Query 009327
Match_columns 537
No_of_seqs 418 out of 2670
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 23:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00705 SppA_67K signal pept 100.0 3.1E-72 6.8E-77 620.5 42.8 395 133-536 36-451 (584)
2 PRK10949 protease 4; Provision 100.0 1.2E-71 2.6E-76 616.1 43.2 392 134-536 51-469 (618)
3 PRK10949 protease 4; Provision 100.0 1.3E-46 2.9E-51 416.7 28.5 246 108-372 306-552 (618)
4 cd07018 S49_SppA_67K_type Sign 100.0 2.8E-45 6E-50 361.5 22.6 212 143-354 2-221 (222)
5 TIGR00705 SppA_67K signal pept 100.0 1.9E-43 4.1E-48 391.4 28.9 250 108-373 286-536 (584)
6 TIGR00706 SppA_dom signal pept 100.0 4.2E-43 9.1E-48 342.5 25.4 206 140-358 1-207 (207)
7 COG0616 SppA Periplasmic serin 100.0 7.6E-43 1.7E-47 360.7 24.1 215 140-359 60-275 (317)
8 cd07022 S49_Sppa_36K_type Sign 100.0 4.9E-42 1.1E-46 336.6 25.3 210 140-353 1-213 (214)
9 PRK11778 putative inner membra 100.0 1.2E-41 2.6E-46 350.0 23.8 209 138-358 89-298 (330)
10 cd07023 S49_Sppa_N_C Signal pe 100.0 3.4E-41 7.4E-46 329.0 23.8 206 140-353 1-207 (208)
11 cd07019 S49_SppA_1 Signal pept 100.0 4.2E-40 9.2E-45 322.2 25.1 208 140-353 1-210 (211)
12 PF01343 Peptidase_S49: Peptid 100.0 1.4E-35 3.1E-40 276.6 14.4 152 207-360 2-154 (154)
13 cd07014 S49_SppA Signal peptid 100.0 2.6E-29 5.6E-34 239.4 20.3 172 143-353 1-176 (177)
14 cd00394 Clp_protease_like Case 100.0 1.6E-27 3.6E-32 223.0 17.9 159 143-343 1-161 (161)
15 COG0616 SppA Periplasmic serin 99.9 6.6E-27 1.4E-31 242.1 14.9 141 389-533 60-200 (317)
16 PRK08184 benzoyl-CoA-dihydrodi 99.9 1.3E-24 2.8E-29 239.0 28.7 332 138-516 22-438 (550)
17 TIGR03222 benzo_boxC benzoyl-C 99.9 2.7E-24 5.8E-29 235.9 27.9 333 138-516 18-434 (546)
18 cd07022 S49_Sppa_36K_type Sign 99.9 4.9E-25 1.1E-29 216.3 17.8 147 389-536 1-147 (214)
19 TIGR00706 SppA_dom signal pept 99.9 3.1E-24 6.8E-29 209.6 16.4 135 389-536 1-135 (207)
20 cd07023 S49_Sppa_N_C Signal pe 99.9 1.3E-23 2.9E-28 205.1 16.3 139 389-536 1-140 (208)
21 PRK11778 putative inner membra 99.9 9.8E-24 2.1E-28 217.5 16.0 137 387-533 89-226 (330)
22 cd07020 Clp_protease_NfeD_1 No 99.9 4.1E-23 9E-28 198.6 18.1 165 141-351 1-171 (187)
23 cd07019 S49_SppA_1 Signal pept 99.9 6.6E-23 1.4E-27 200.9 16.9 135 389-527 1-137 (211)
24 cd07018 S49_SppA_67K_type Sign 99.9 2.3E-23 4.9E-28 205.6 13.4 142 392-534 2-150 (222)
25 cd07015 Clp_protease_NfeD Nodu 99.9 8E-22 1.7E-26 186.8 16.7 164 141-350 1-170 (172)
26 cd07021 Clp_protease_NfeD_like 99.9 1.2E-21 2.5E-26 187.1 17.2 160 141-350 1-176 (178)
27 cd07013 S14_ClpP Caseinolytic 99.9 6.4E-21 1.4E-25 179.5 17.7 157 143-343 2-162 (162)
28 cd07016 S14_ClpP_1 Caseinolyti 99.8 5.3E-20 1.1E-24 172.5 18.3 157 143-343 2-160 (160)
29 cd07014 S49_SppA Signal peptid 99.8 6.8E-18 1.5E-22 160.9 13.3 116 392-507 1-117 (177)
30 cd07017 S14_ClpP_2 Caseinolyti 99.8 1.9E-17 4.1E-22 157.3 15.3 158 142-343 10-171 (171)
31 cd07020 Clp_protease_NfeD_1 No 99.7 8.4E-18 1.8E-22 161.8 12.6 99 390-502 1-102 (187)
32 cd07021 Clp_protease_NfeD_like 99.7 6.4E-17 1.4E-21 154.6 13.9 102 390-505 1-102 (178)
33 PRK12553 ATP-dependent Clp pro 99.7 3.7E-16 7.9E-21 152.8 16.1 162 142-345 36-201 (207)
34 cd00394 Clp_protease_like Case 99.7 1.3E-16 2.8E-21 149.3 11.9 101 392-505 1-101 (161)
35 KOG1680 Enoyl-CoA hydratase [L 99.7 7.1E-17 1.5E-21 160.1 9.0 125 385-517 42-187 (290)
36 COG1030 NfeD Membrane-bound se 99.7 7.1E-16 1.5E-20 162.3 16.8 160 135-344 22-186 (436)
37 PRK14512 ATP-dependent Clp pro 99.7 2.4E-15 5.2E-20 145.9 18.3 165 142-350 24-193 (197)
38 TIGR00493 clpP ATP-dependent C 99.6 7.1E-15 1.5E-19 142.1 16.9 159 142-344 27-189 (191)
39 cd07015 Clp_protease_NfeD Nodu 99.6 1.4E-15 3E-20 144.3 11.7 99 390-502 1-102 (172)
40 PRK00277 clpP ATP-dependent Cl 99.6 8.3E-15 1.8E-19 142.6 17.4 160 142-345 32-195 (200)
41 PRK09674 enoyl-CoA hydratase-i 99.6 2.7E-15 5.9E-20 151.1 12.8 122 387-516 9-151 (255)
42 COG1024 CaiD Enoyl-CoA hydrata 99.6 2E-15 4.3E-20 152.1 11.0 124 388-517 13-158 (257)
43 PRK14514 ATP-dependent Clp pro 99.6 1.7E-14 3.6E-19 141.8 16.6 159 143-345 56-218 (221)
44 CHL00028 clpP ATP-dependent Cl 99.6 2.4E-14 5.2E-19 139.1 17.2 160 143-345 32-195 (200)
45 PRK05862 enoyl-CoA hydratase; 99.6 5.5E-15 1.2E-19 149.0 13.2 124 387-516 11-153 (257)
46 TIGR03210 badI 2-ketocyclohexa 99.6 4.1E-15 8.8E-20 149.9 11.9 123 387-517 9-154 (256)
47 PLN02664 enoyl-CoA hydratase/d 99.6 5.3E-15 1.1E-19 150.6 12.8 125 386-516 14-170 (275)
48 PRK06190 enoyl-CoA hydratase; 99.6 7.2E-15 1.6E-19 148.4 13.6 122 387-516 11-153 (258)
49 PRK09120 p-hydroxycinnamoyl Co 99.6 4.1E-15 8.9E-20 151.5 11.9 125 387-517 15-164 (275)
50 PRK08138 enoyl-CoA hydratase; 99.6 6.4E-15 1.4E-19 148.9 13.2 124 387-516 15-157 (261)
51 PRK06142 enoyl-CoA hydratase; 99.6 4.4E-15 9.6E-20 150.9 12.1 125 386-516 12-168 (272)
52 PRK05869 enoyl-CoA hydratase; 99.6 8.7E-15 1.9E-19 144.6 13.8 131 387-524 15-168 (222)
53 TIGR01929 menB naphthoate synt 99.6 4.1E-15 8.9E-20 150.2 11.7 122 387-516 10-156 (259)
54 PLN02600 enoyl-CoA hydratase 99.6 5.7E-15 1.2E-19 148.5 12.6 124 387-516 2-147 (251)
55 PRK12551 ATP-dependent Clp pro 99.6 2.6E-14 5.6E-19 138.4 16.6 159 143-345 27-189 (196)
56 PRK06072 enoyl-CoA hydratase; 99.6 8.6E-15 1.9E-19 146.9 13.3 123 387-515 7-147 (248)
57 PRK09245 enoyl-CoA hydratase; 99.6 6.1E-15 1.3E-19 149.4 12.1 124 387-516 10-162 (266)
58 PF00574 CLP_protease: Clp pro 99.6 7E-15 1.5E-19 140.7 11.9 159 143-345 18-180 (182)
59 PRK06563 enoyl-CoA hydratase; 99.6 7.4E-15 1.6E-19 147.9 12.6 124 387-516 6-151 (255)
60 COG0740 ClpP Protease subunit 99.6 4.7E-14 1E-18 135.6 17.2 161 144-348 30-194 (200)
61 PRK08260 enoyl-CoA hydratase; 99.6 5.8E-15 1.3E-19 151.9 11.7 124 387-516 11-172 (296)
62 PRK07854 enoyl-CoA hydratase; 99.6 7.9E-15 1.7E-19 146.8 12.4 123 387-516 7-145 (243)
63 PRK07509 enoyl-CoA hydratase; 99.6 7.3E-15 1.6E-19 148.4 12.1 123 387-517 10-162 (262)
64 PRK09076 enoyl-CoA hydratase; 99.6 9.5E-15 2.1E-19 147.4 12.8 123 387-516 10-154 (258)
65 PRK06143 enoyl-CoA hydratase; 99.6 9.7E-15 2.1E-19 147.2 12.8 123 387-516 14-158 (256)
66 PRK05980 enoyl-CoA hydratase; 99.6 7E-15 1.5E-19 148.4 11.8 124 387-516 10-159 (260)
67 TIGR02280 PaaB1 phenylacetate 99.6 1.1E-14 2.4E-19 146.7 13.1 123 387-516 6-152 (256)
68 PRK07511 enoyl-CoA hydratase; 99.6 9.5E-15 2.1E-19 147.5 12.5 125 387-517 10-158 (260)
69 PRK08258 enoyl-CoA hydratase; 99.6 1.2E-14 2.6E-19 148.2 13.3 122 387-516 24-173 (277)
70 PRK07110 polyketide biosynthes 99.6 1.1E-14 2.4E-19 146.2 12.9 122 387-516 12-153 (249)
71 PRK05809 3-hydroxybutyryl-CoA 99.6 8.9E-15 1.9E-19 147.7 12.2 122 387-516 11-156 (260)
72 PRK05995 enoyl-CoA hydratase; 99.6 1.1E-14 2.3E-19 147.3 12.7 123 387-516 11-157 (262)
73 PLN02888 enoyl-CoA hydratase 99.6 1.4E-14 2.9E-19 146.9 13.4 122 387-516 17-158 (265)
74 PRK07657 enoyl-CoA hydratase; 99.6 1E-14 2.2E-19 147.4 12.4 125 387-517 11-157 (260)
75 PRK07658 enoyl-CoA hydratase; 99.6 9.7E-15 2.1E-19 147.1 12.3 123 387-516 9-153 (257)
76 PRK06144 enoyl-CoA hydratase; 99.6 7.7E-15 1.7E-19 148.4 11.6 124 387-516 15-162 (262)
77 PRK03580 carnitinyl-CoA dehydr 99.6 1.2E-14 2.6E-19 146.9 12.6 121 387-516 10-153 (261)
78 PRK05870 enoyl-CoA hydratase; 99.6 8.7E-15 1.9E-19 146.9 11.4 124 387-516 10-154 (249)
79 PRK07468 enoyl-CoA hydratase; 99.6 1E-14 2.2E-19 147.5 11.9 123 388-517 13-159 (262)
80 PRK05864 enoyl-CoA hydratase; 99.6 1.1E-14 2.4E-19 148.3 12.2 124 387-516 17-169 (276)
81 PRK08140 enoyl-CoA hydratase; 99.6 1.4E-14 3.1E-19 146.3 12.9 123 387-516 11-158 (262)
82 PRK06023 enoyl-CoA hydratase; 99.6 1.2E-14 2.7E-19 146.0 12.4 131 388-524 14-166 (251)
83 PRK08252 enoyl-CoA hydratase; 99.6 1.6E-14 3.5E-19 145.4 13.2 125 387-517 10-151 (254)
84 PRK07327 enoyl-CoA hydratase; 99.6 1.1E-14 2.3E-19 147.9 11.9 124 387-516 19-165 (268)
85 PRK11423 methylmalonyl-CoA dec 99.6 1.5E-14 3.2E-19 146.3 12.7 123 387-516 11-155 (261)
86 TIGR03189 dienoyl_CoA_hyt cycl 99.6 1.8E-14 4E-19 144.9 12.9 122 387-516 8-147 (251)
87 PRK08150 enoyl-CoA hydratase; 99.6 2.3E-14 4.9E-19 144.5 13.3 122 387-516 9-151 (255)
88 PRK05981 enoyl-CoA hydratase; 99.6 1.9E-14 4E-19 145.8 12.8 124 387-516 11-162 (266)
89 PRK07799 enoyl-CoA hydratase; 99.6 1.9E-14 4.2E-19 145.5 12.8 125 387-517 12-160 (263)
90 PRK06494 enoyl-CoA hydratase; 99.6 2E-14 4.3E-19 145.1 12.8 124 387-516 11-153 (259)
91 PRK06127 enoyl-CoA hydratase; 99.6 1.8E-14 3.8E-19 146.3 12.5 125 387-517 18-166 (269)
92 PRK08139 enoyl-CoA hydratase; 99.6 1.8E-14 3.8E-19 146.2 12.4 123 387-516 18-162 (266)
93 PRK06688 enoyl-CoA hydratase; 99.6 2.3E-14 4.9E-19 144.5 13.0 124 387-516 12-155 (259)
94 PRK07260 enoyl-CoA hydratase; 99.6 1.6E-14 3.4E-19 145.5 11.8 124 387-516 9-157 (255)
95 PRK07396 dihydroxynaphthoic ac 99.6 2E-14 4.4E-19 146.2 12.5 125 386-516 19-166 (273)
96 PRK05674 gamma-carboxygeranoyl 99.6 1.5E-14 3.3E-19 146.5 11.5 122 388-516 14-159 (265)
97 PRK08259 enoyl-CoA hydratase; 99.6 2.6E-14 5.5E-19 144.0 12.6 124 387-516 10-152 (254)
98 PRK06210 enoyl-CoA hydratase; 99.6 2.7E-14 5.9E-19 145.1 12.9 124 387-516 12-167 (272)
99 PF00378 ECH: Enoyl-CoA hydrat 99.6 2.2E-14 4.7E-19 143.3 11.7 122 387-516 5-149 (245)
100 PLN02921 naphthoate synthase 99.5 3.7E-14 7.9E-19 147.8 12.8 122 387-516 74-220 (327)
101 PLN03214 probable enoyl-CoA hy 99.5 2.6E-14 5.7E-19 145.8 11.4 123 387-516 19-167 (278)
102 PRK07659 enoyl-CoA hydratase; 99.5 4.1E-14 8.9E-19 142.9 12.6 123 387-516 13-157 (260)
103 PRK08321 naphthoate synthase; 99.5 4.5E-14 9.7E-19 145.8 12.9 124 387-516 32-195 (302)
104 PLN02157 3-hydroxyisobutyryl-C 99.5 3.8E-14 8.2E-19 151.0 12.7 120 387-514 44-190 (401)
105 PF01343 Peptidase_S49: Peptid 99.5 6.9E-15 1.5E-19 137.3 6.0 77 459-536 4-80 (154)
106 PRK14513 ATP-dependent Clp pro 99.5 3E-13 6.6E-18 131.3 17.6 159 143-345 29-191 (201)
107 PRK06495 enoyl-CoA hydratase; 99.5 7.2E-14 1.6E-18 140.9 13.3 120 387-516 11-153 (257)
108 TIGR03200 dearomat_oah 6-oxocy 99.5 6.1E-14 1.3E-18 146.1 12.9 123 389-517 37-184 (360)
109 PRK07827 enoyl-CoA hydratase; 99.5 6.3E-14 1.4E-18 141.5 11.9 121 387-514 13-157 (260)
110 PRK07938 enoyl-CoA hydratase; 99.5 8E-14 1.7E-18 140.0 12.5 121 386-516 8-150 (249)
111 KOG1679 Enoyl-CoA hydratase [L 99.5 2.3E-14 5.1E-19 137.0 7.9 132 384-523 35-192 (291)
112 PRK12478 enoyl-CoA hydratase; 99.5 5.7E-14 1.2E-18 144.7 11.3 110 386-501 11-157 (298)
113 PLN02988 3-hydroxyisobutyryl-C 99.5 6.8E-14 1.5E-18 148.4 12.0 121 387-515 16-163 (381)
114 PLN02874 3-hydroxyisobutyryl-C 99.5 6.5E-14 1.4E-18 148.8 11.7 122 387-514 18-162 (379)
115 cd07016 S14_ClpP_1 Caseinolyti 99.5 1.1E-13 2.3E-18 129.8 11.4 92 392-496 2-93 (160)
116 PRK08788 enoyl-CoA hydratase; 99.5 2E-13 4.3E-18 139.9 13.4 124 386-516 23-180 (287)
117 PRK07112 polyketide biosynthes 99.5 1.9E-13 4.1E-18 137.8 11.5 121 387-516 11-154 (255)
118 PRK11730 fadB multifunctional 99.5 2.7E-13 5.8E-18 154.9 13.8 124 387-516 14-161 (715)
119 PRK08290 enoyl-CoA hydratase; 99.5 2.8E-13 6E-18 139.0 12.6 122 387-516 11-175 (288)
120 COG0447 MenB Dihydroxynaphthoi 99.5 4.7E-14 1E-18 135.2 6.4 122 388-517 27-176 (282)
121 PRK05617 3-hydroxyisobutyryl-C 99.5 1.5E-13 3.3E-18 144.1 10.2 122 387-514 10-157 (342)
122 PRK12552 ATP-dependent Clp pro 99.5 1.9E-12 4.1E-17 127.1 17.1 168 143-345 32-213 (222)
123 cd06558 crotonase-like Crotona 99.5 6.1E-13 1.3E-17 127.7 13.4 124 387-516 6-152 (195)
124 PRK08272 enoyl-CoA hydratase; 99.5 3E-13 6.5E-18 139.6 12.1 121 387-516 17-183 (302)
125 PLN02851 3-hydroxyisobutyryl-C 99.5 3.5E-13 7.5E-18 143.8 12.7 122 387-514 49-195 (407)
126 TIGR02437 FadB fatty oxidation 99.4 5.1E-13 1.1E-17 152.4 13.6 130 387-524 14-171 (714)
127 TIGR02440 FadJ fatty oxidation 99.4 8.3E-13 1.8E-17 150.5 12.6 122 387-516 8-157 (699)
128 PLN02267 enoyl-CoA hydratase/i 99.4 2.2E-12 4.7E-17 128.9 13.6 122 387-516 7-154 (239)
129 PRK06213 enoyl-CoA hydratase; 99.4 2.2E-12 4.7E-17 128.0 12.6 121 387-516 10-151 (229)
130 TIGR02441 fa_ox_alpha_mit fatt 99.4 1.1E-12 2.5E-17 149.9 11.3 131 387-524 20-179 (737)
131 PRK11154 fadJ multifunctional 99.4 1.8E-12 4E-17 147.9 12.9 122 387-516 13-162 (708)
132 cd07013 S14_ClpP Caseinolytic 99.4 2.1E-12 4.5E-17 121.7 10.5 92 392-496 2-95 (162)
133 cd06558 crotonase-like Crotona 99.3 2.5E-11 5.3E-16 116.5 15.6 167 138-357 6-192 (195)
134 TIGR03222 benzo_boxC benzoyl-C 99.3 7.3E-12 1.6E-16 138.2 12.6 127 387-515 18-182 (546)
135 PRK08184 benzoyl-CoA-dihydrodi 99.3 6.9E-12 1.5E-16 138.7 12.1 127 387-515 22-186 (550)
136 PRK06144 enoyl-CoA hydratase; 99.3 3.5E-11 7.7E-16 121.8 15.8 168 138-357 15-202 (262)
137 PRK08138 enoyl-CoA hydratase; 99.3 4E-11 8.7E-16 121.3 16.2 167 138-357 15-197 (261)
138 PRK05869 enoyl-CoA hydratase; 99.3 4.4E-11 9.5E-16 118.3 15.9 168 136-357 13-198 (222)
139 PLN02600 enoyl-CoA hydratase 99.3 4.8E-11 1E-15 120.1 16.2 167 138-357 2-187 (251)
140 PRK09674 enoyl-CoA hydratase-i 99.3 4.3E-11 9.4E-16 120.6 15.8 167 138-357 9-191 (255)
141 PRK11423 methylmalonyl-CoA dec 99.3 3.1E-11 6.7E-16 122.2 14.8 167 138-357 11-195 (261)
142 TIGR03210 badI 2-ketocyclohexa 99.3 4.7E-11 1E-15 120.5 15.9 165 138-357 9-193 (256)
143 PRK05862 enoyl-CoA hydratase; 99.3 4.6E-11 9.9E-16 120.5 15.8 167 138-357 11-193 (257)
144 PRK05864 enoyl-CoA hydratase; 99.3 2.6E-11 5.6E-16 123.7 13.7 165 138-357 17-209 (276)
145 PRK05995 enoyl-CoA hydratase; 99.3 5.3E-11 1.1E-15 120.4 15.7 167 137-357 10-197 (262)
146 PRK06143 enoyl-CoA hydratase; 99.3 6.4E-11 1.4E-15 119.5 16.2 167 137-357 13-198 (256)
147 PRK06190 enoyl-CoA hydratase; 99.3 6.3E-11 1.4E-15 119.8 16.0 167 138-357 11-193 (258)
148 PRK07511 enoyl-CoA hydratase; 99.3 5.7E-11 1.2E-15 120.0 15.6 168 137-357 9-197 (260)
149 PRK08139 enoyl-CoA hydratase; 99.3 6.3E-11 1.4E-15 120.2 15.9 166 138-357 18-202 (266)
150 PRK06142 enoyl-CoA hydratase; 99.3 6.5E-11 1.4E-15 120.4 15.9 169 137-357 12-209 (272)
151 PLN02664 enoyl-CoA hydratase/d 99.3 7.3E-11 1.6E-15 120.3 15.7 166 137-355 14-209 (275)
152 PRK05980 enoyl-CoA hydratase; 99.3 6.8E-11 1.5E-15 119.4 15.3 167 138-357 10-199 (260)
153 PRK06127 enoyl-CoA hydratase; 99.3 8.1E-11 1.8E-15 119.6 15.8 167 138-357 18-205 (269)
154 TIGR01929 menB naphthoate synt 99.3 6.9E-11 1.5E-15 119.4 15.1 168 138-357 10-196 (259)
155 PRK08258 enoyl-CoA hydratase; 99.3 9.3E-11 2E-15 119.7 16.0 169 138-357 24-213 (277)
156 PLN02888 enoyl-CoA hydratase 99.3 9.9E-11 2.2E-15 118.8 16.0 167 138-357 17-198 (265)
157 PRK06688 enoyl-CoA hydratase; 99.3 7.6E-11 1.6E-15 118.9 15.0 167 138-357 12-195 (259)
158 PRK08272 enoyl-CoA hydratase; 99.3 7.7E-11 1.7E-15 121.7 15.3 164 138-357 17-223 (302)
159 PRK07657 enoyl-CoA hydratase; 99.3 9.8E-11 2.1E-15 118.3 15.8 167 138-357 11-196 (260)
160 TIGR02280 PaaB1 phenylacetate 99.3 9.4E-11 2E-15 118.2 15.6 166 138-357 6-192 (256)
161 PRK06495 enoyl-CoA hydratase; 99.3 9E-11 2E-15 118.4 15.3 164 137-357 10-193 (257)
162 PRK06563 enoyl-CoA hydratase; 99.3 8.9E-11 1.9E-15 118.3 15.2 167 138-357 6-191 (255)
163 PRK09120 p-hydroxycinnamoyl Co 99.3 9.2E-11 2E-15 119.6 15.4 168 138-358 15-204 (275)
164 PRK05809 3-hydroxybutyryl-CoA 99.3 1E-10 2.3E-15 118.1 15.6 167 138-357 11-196 (260)
165 PRK05674 gamma-carboxygeranoyl 99.3 9.1E-11 2E-15 119.0 15.2 167 138-357 13-199 (265)
166 PRK06210 enoyl-CoA hydratase; 99.3 4.7E-11 1E-15 121.4 12.9 167 138-357 12-207 (272)
167 PRK06023 enoyl-CoA hydratase; 99.3 1.2E-10 2.5E-15 117.3 15.6 165 140-357 15-196 (251)
168 PRK07658 enoyl-CoA hydratase; 99.3 1.1E-10 2.4E-15 117.6 15.4 167 137-357 8-193 (257)
169 KOG1680 Enoyl-CoA hydratase [L 99.3 2.3E-11 4.9E-16 121.2 10.0 168 137-358 43-227 (290)
170 PRK09245 enoyl-CoA hydratase; 99.3 1.5E-10 3.4E-15 117.2 16.3 169 138-357 10-202 (266)
171 PRK09076 enoyl-CoA hydratase; 99.3 1.1E-10 2.4E-15 117.9 15.2 167 137-357 9-194 (258)
172 PRK06494 enoyl-CoA hydratase; 99.3 1.2E-10 2.7E-15 117.6 15.5 167 138-357 11-193 (259)
173 PRK03580 carnitinyl-CoA dehydr 99.2 1.1E-10 2.4E-15 118.1 15.2 166 138-357 10-193 (261)
174 PRK07110 polyketide biosynthes 99.2 1.3E-10 2.9E-15 116.7 15.3 167 138-357 12-193 (249)
175 PRK12478 enoyl-CoA hydratase; 99.2 1E-10 2.2E-15 120.7 14.8 165 137-357 11-208 (298)
176 PRK08260 enoyl-CoA hydratase; 99.2 1.4E-10 2.9E-15 119.6 15.7 167 138-357 11-212 (296)
177 PRK08150 enoyl-CoA hydratase; 99.2 1.6E-10 3.4E-15 116.6 15.8 165 138-357 9-191 (255)
178 PRK07396 dihydroxynaphthoic ac 99.2 1.5E-10 3.3E-15 117.9 15.6 168 138-357 20-206 (273)
179 PRK07468 enoyl-CoA hydratase; 99.2 7.6E-11 1.6E-15 119.3 13.2 165 138-356 12-197 (262)
180 PF00378 ECH: Enoyl-CoA hydrat 99.2 7.9E-11 1.7E-15 117.7 13.2 168 138-357 5-189 (245)
181 cd07017 S14_ClpP_2 Caseinolyti 99.2 4E-11 8.7E-16 113.9 10.5 92 392-496 11-104 (171)
182 PRK07327 enoyl-CoA hydratase; 99.2 1.8E-10 3.9E-15 117.0 15.9 168 138-357 19-205 (268)
183 PF01972 SDH_sah: Serine dehyd 99.2 1.1E-10 2.4E-15 116.7 13.4 171 164-359 77-260 (285)
184 PRK05870 enoyl-CoA hydratase; 99.2 8.9E-11 1.9E-15 118.0 12.8 165 138-357 10-192 (249)
185 PRK07854 enoyl-CoA hydratase; 99.2 2.1E-10 4.6E-15 114.9 15.4 169 138-359 7-187 (243)
186 PRK07938 enoyl-CoA hydratase; 99.2 2.6E-10 5.6E-15 114.7 15.9 165 136-357 7-190 (249)
187 PRK08140 enoyl-CoA hydratase; 99.2 2.4E-10 5.1E-15 115.6 15.6 166 138-357 11-198 (262)
188 PRK05981 enoyl-CoA hydratase; 99.2 2.5E-10 5.5E-15 115.7 15.6 167 138-357 11-202 (266)
189 PRK08252 enoyl-CoA hydratase; 99.2 2.6E-10 5.5E-15 115.0 15.4 167 138-357 10-190 (254)
190 PRK07260 enoyl-CoA hydratase; 99.2 2.8E-10 6.1E-15 114.7 15.7 167 138-357 9-197 (255)
191 PRK08290 enoyl-CoA hydratase; 99.2 1.9E-10 4E-15 118.2 14.4 165 138-357 11-215 (288)
192 PLN02921 naphthoate synthase 99.2 2.9E-10 6.3E-15 118.7 16.1 165 138-357 74-260 (327)
193 PRK07799 enoyl-CoA hydratase; 99.2 2.5E-10 5.4E-15 115.6 15.1 167 138-357 12-199 (263)
194 PLN03214 probable enoyl-CoA hy 99.2 4E-10 8.7E-15 115.2 15.9 166 138-357 19-207 (278)
195 PRK07659 enoyl-CoA hydratase; 99.2 3.5E-10 7.6E-15 114.4 14.5 165 138-357 13-196 (260)
196 COG1024 CaiD Enoyl-CoA hydrata 99.2 1.7E-10 3.6E-15 116.4 11.6 167 139-358 13-199 (257)
197 KOG1681 Enoyl-CoA isomerase [L 99.2 1.9E-11 4.2E-16 118.2 4.4 123 386-514 28-183 (292)
198 PRK08259 enoyl-CoA hydratase; 99.2 4.4E-10 9.5E-15 113.3 14.3 167 138-357 10-192 (254)
199 PRK07509 enoyl-CoA hydratase; 99.2 5.7E-10 1.2E-14 112.8 15.0 106 138-247 10-139 (262)
200 PRK08321 naphthoate synthase; 99.2 6.6E-10 1.4E-14 114.9 15.4 167 138-357 32-235 (302)
201 PRK07827 enoyl-CoA hydratase; 99.1 3.2E-10 7E-15 114.6 12.5 107 138-248 13-139 (260)
202 COG1030 NfeD Membrane-bound se 99.1 1.2E-10 2.5E-15 123.3 9.3 97 386-496 24-123 (436)
203 TIGR03189 dienoyl_CoA_hyt cycl 99.1 1.1E-09 2.4E-14 110.3 15.2 154 138-346 8-176 (251)
204 PRK05617 3-hydroxyisobutyryl-C 99.1 8.4E-10 1.8E-14 116.0 14.9 166 137-355 9-196 (342)
205 PRK08788 enoyl-CoA hydratase; 99.1 1.2E-09 2.7E-14 112.0 15.7 166 138-357 24-220 (287)
206 PRK14512 ATP-dependent Clp pro 99.1 3E-10 6.4E-15 110.4 10.5 92 391-495 24-117 (197)
207 PRK06072 enoyl-CoA hydratase; 99.1 1.6E-09 3.5E-14 108.8 15.8 105 138-246 7-125 (248)
208 PRK12553 ATP-dependent Clp pro 99.1 3.7E-10 8E-15 110.6 10.1 95 391-498 36-132 (207)
209 PRK11730 fadB multifunctional 99.1 1.4E-09 3.1E-14 124.4 16.5 167 138-357 14-201 (715)
210 TIGR03200 dearomat_oah 6-oxocy 99.1 2.8E-09 6E-14 111.5 15.2 139 163-349 56-215 (360)
211 PRK06213 enoyl-CoA hydratase; 99.1 3.3E-09 7.1E-14 105.3 15.0 164 138-357 10-191 (229)
212 TIGR02437 FadB fatty oxidation 99.0 3.4E-09 7.3E-14 121.3 16.4 168 138-357 14-201 (714)
213 PRK07112 polyketide biosynthes 99.0 4.9E-09 1.1E-13 105.8 15.5 155 138-348 11-185 (255)
214 KOG0840 ATP-dependent Clp prot 99.0 3.3E-09 7.2E-14 104.5 13.4 159 143-345 94-256 (275)
215 PRK00277 clpP ATP-dependent Cl 99.0 1.5E-09 3.2E-14 105.9 10.2 93 391-496 32-126 (200)
216 PF00574 CLP_protease: Clp pro 99.0 1.3E-09 2.8E-14 104.3 9.6 91 392-495 18-110 (182)
217 TIGR02440 FadJ fatty oxidation 99.0 5.6E-09 1.2E-13 119.4 16.3 170 137-358 7-198 (699)
218 PLN02267 enoyl-CoA hydratase/i 99.0 9.4E-09 2E-13 102.8 15.7 166 138-357 7-196 (239)
219 PRK14514 ATP-dependent Clp pro 99.0 3.1E-09 6.7E-14 104.8 11.8 91 392-495 56-148 (221)
220 PLN02874 3-hydroxyisobutyryl-C 99.0 2.5E-09 5.4E-14 113.9 11.8 168 138-358 18-204 (379)
221 TIGR00493 clpP ATP-dependent C 99.0 3.9E-09 8.5E-14 102.2 11.7 93 391-496 27-121 (191)
222 PF01972 SDH_sah: Serine dehyd 99.0 4.3E-09 9.3E-14 105.4 11.9 83 415-502 77-163 (285)
223 CHL00028 clpP ATP-dependent Cl 99.0 4.2E-09 9E-14 102.6 11.6 91 392-495 32-124 (200)
224 COG0740 ClpP Protease subunit 98.9 3.7E-09 8.1E-14 102.0 10.2 90 393-495 30-121 (200)
225 PRK11154 fadJ multifunctional 98.9 1.3E-08 2.8E-13 116.5 16.3 168 137-358 12-203 (708)
226 PRK12551 ATP-dependent Clp pro 98.9 6.3E-09 1.4E-13 101.0 11.5 91 392-495 27-119 (196)
227 PLN02157 3-hydroxyisobutyryl-C 98.9 5.5E-09 1.2E-13 111.7 11.3 157 138-349 44-223 (401)
228 PLN02988 3-hydroxyisobutyryl-C 98.9 8.7E-09 1.9E-13 109.7 11.3 167 138-359 16-205 (381)
229 TIGR02441 fa_ox_alpha_mit fatt 98.8 5E-08 1.1E-12 112.1 16.2 158 138-346 20-198 (737)
230 PRK14513 ATP-dependent Clp pro 98.8 2.1E-08 4.6E-13 97.6 11.1 91 392-495 29-121 (201)
231 PLN02851 3-hydroxyisobutyryl-C 98.8 3.1E-08 6.8E-13 106.0 12.0 157 138-349 49-228 (407)
232 COG0447 MenB Dihydroxynaphthoi 98.7 4E-08 8.7E-13 94.9 9.1 163 139-357 27-215 (282)
233 KOG1682 Enoyl-CoA isomerase [L 98.7 2.2E-08 4.8E-13 95.7 6.7 120 385-513 37-180 (287)
234 KOG1684 Enoyl-CoA hydratase [L 98.5 1.4E-07 3.1E-12 97.2 7.1 117 385-507 43-185 (401)
235 PRK12552 ATP-dependent Clp pro 98.5 5.4E-07 1.2E-11 88.9 10.8 101 392-495 32-143 (222)
236 KOG1679 Enoyl-CoA hydratase [L 98.3 6.6E-07 1.4E-11 86.4 5.7 86 163-248 59-162 (291)
237 KOG1681 Enoyl-CoA isomerase [L 98.3 1.8E-06 3.8E-11 84.3 8.4 161 137-355 28-225 (292)
238 KOG0016 Enoyl-CoA hydratase/is 98.3 2.7E-06 5.9E-11 84.6 8.8 126 386-517 13-167 (266)
239 PLN02820 3-methylcrotonyl-CoA 98.3 0.00024 5.3E-09 79.4 24.6 85 162-248 148-244 (569)
240 TIGR01117 mmdA methylmalonyl-C 98.2 0.00055 1.2E-08 75.9 25.6 84 162-248 101-193 (512)
241 PF01039 Carboxyl_trans: Carbo 98.1 0.00037 8.1E-09 77.0 22.8 267 162-498 76-408 (493)
242 KOG0840 ATP-dependent Clp prot 97.9 3.4E-05 7.3E-10 76.6 8.8 91 392-495 94-186 (275)
243 KOG1682 Enoyl-CoA isomerase [L 97.9 0.00012 2.6E-09 70.6 10.7 162 139-357 40-223 (287)
244 PRK07189 malonate decarboxylas 97.7 0.00038 8.3E-09 71.8 12.1 101 389-495 69-181 (301)
245 TIGR03133 malonate_beta malona 97.7 0.00048 1E-08 70.3 12.2 101 389-495 60-172 (274)
246 COG0777 AccD Acetyl-CoA carbox 97.5 0.0014 3E-08 66.0 12.5 198 83-359 64-280 (294)
247 KOG0016 Enoyl-CoA hydratase/is 97.4 0.0017 3.6E-08 65.0 12.1 146 163-357 36-206 (266)
248 CHL00198 accA acetyl-CoA carbo 97.4 0.0034 7.4E-08 65.3 14.2 83 163-247 139-229 (322)
249 TIGR03133 malonate_beta malona 97.3 0.0041 8.9E-08 63.6 13.6 86 162-248 78-176 (274)
250 PRK12319 acetyl-CoA carboxylas 97.3 0.0046 1E-07 62.7 13.9 84 163-248 83-174 (256)
251 TIGR00515 accD acetyl-CoA carb 97.2 0.012 2.7E-07 60.5 15.9 84 163-248 140-232 (285)
252 PLN03229 acetyl-coenzyme A car 97.2 0.0048 1E-07 69.9 13.3 84 163-248 227-318 (762)
253 PLN03230 acetyl-coenzyme A car 97.2 0.0055 1.2E-07 65.5 13.1 84 163-248 206-297 (431)
254 PRK05724 acetyl-CoA carboxylas 97.1 0.0043 9.4E-08 64.6 11.8 84 163-248 136-227 (319)
255 TIGR00513 accA acetyl-CoA carb 97.1 0.0053 1.1E-07 63.9 12.3 84 163-248 136-227 (316)
256 CHL00174 accD acetyl-CoA carbo 97.1 0.0089 1.9E-07 61.6 13.5 131 162-359 152-292 (296)
257 PRK05654 acetyl-CoA carboxylas 96.8 0.023 5E-07 58.7 13.5 85 162-248 140-233 (292)
258 PRK07189 malonate decarboxylas 96.7 0.0082 1.8E-07 62.1 9.8 86 162-248 87-185 (301)
259 TIGR03134 malonate_gamma malon 96.6 0.029 6.4E-07 56.3 12.2 84 164-248 50-146 (238)
260 PRK05654 acetyl-CoA carboxylas 96.5 0.028 6.1E-07 58.1 11.8 86 411-498 138-232 (292)
261 CHL00174 accD acetyl-CoA carbo 96.4 0.024 5.2E-07 58.5 10.6 114 411-526 150-283 (296)
262 PRK12319 acetyl-CoA carboxylas 96.4 0.018 4E-07 58.4 9.7 84 413-498 82-173 (256)
263 PLN03229 acetyl-coenzyme A car 96.2 0.022 4.8E-07 64.7 10.0 83 414-498 227-317 (762)
264 TIGR00515 accD acetyl-CoA carb 96.2 0.05 1.1E-06 56.1 11.8 86 411-498 137-231 (285)
265 CHL00198 accA acetyl-CoA carbo 96.2 0.034 7.4E-07 58.0 10.3 83 413-497 138-228 (322)
266 TIGR00513 accA acetyl-CoA carb 96.1 0.031 6.7E-07 58.2 9.8 85 412-498 134-226 (316)
267 PLN03230 acetyl-coenzyme A car 95.9 0.046 1E-06 58.6 10.1 84 413-498 205-296 (431)
268 PRK05724 acetyl-CoA carboxylas 95.9 0.053 1.1E-06 56.6 10.1 84 413-498 135-226 (319)
269 TIGR01117 mmdA methylmalonyl-C 95.8 0.11 2.4E-06 57.9 13.1 148 163-359 335-494 (512)
270 PF01039 Carboxyl_trans: Carbo 95.8 0.043 9.4E-07 60.8 9.6 83 411-495 74-166 (493)
271 COG0825 AccA Acetyl-CoA carbox 95.8 0.023 5.1E-07 57.9 6.8 81 164-246 136-224 (317)
272 COG4799 Acetyl-CoA carboxylase 95.7 0.52 1.1E-05 52.3 17.4 85 161-248 109-202 (526)
273 TIGR03134 malonate_gamma malon 95.7 0.075 1.6E-06 53.4 10.0 85 413-498 48-145 (238)
274 PLN02820 3-methylcrotonyl-CoA 95.2 0.18 3.8E-06 56.9 11.9 83 411-495 146-240 (569)
275 TIGR02717 AcCoA-syn-alpha acet 94.8 0.84 1.8E-05 50.1 15.8 77 138-219 150-238 (447)
276 KOG1684 Enoyl-CoA hydratase [L 94.4 0.29 6.4E-06 51.5 10.3 100 138-244 45-169 (401)
277 PF06833 MdcE: Malonate decarb 93.2 0.62 1.3E-05 46.6 9.8 81 415-495 48-140 (234)
278 PF06833 MdcE: Malonate decarb 92.9 0.72 1.6E-05 46.1 9.7 121 167-345 51-186 (234)
279 COG0777 AccD Acetyl-CoA carbox 92.1 1 2.2E-05 45.9 9.7 114 411-526 139-271 (294)
280 COG0074 SucD Succinyl-CoA synt 91.3 0.36 7.7E-06 49.4 5.5 80 136-219 143-236 (293)
281 PF00549 Ligase_CoA: CoA-ligas 90.8 0.42 9E-06 44.9 5.2 79 139-219 35-116 (153)
282 PF00549 Ligase_CoA: CoA-ligas 90.6 0.51 1.1E-05 44.3 5.5 60 415-474 58-121 (153)
283 PF13607 Succ_CoA_lig: Succiny 89.9 0.81 1.8E-05 42.2 6.2 52 417-472 41-92 (138)
284 COG3904 Predicted periplasmic 89.5 1.6 3.5E-05 42.8 8.0 99 137-250 72-172 (245)
285 PF01740 STAS: STAS domain; I 89.3 1.9 4E-05 37.6 7.9 72 137-217 6-86 (117)
286 PF13607 Succ_CoA_lig: Succiny 88.3 1.1 2.3E-05 41.3 5.8 50 166-220 41-90 (138)
287 cd07041 STAS_RsbR_RsbS_like Su 86.6 4.1 8.8E-05 35.1 8.2 71 138-217 8-79 (109)
288 cd06844 STAS Sulphate Transpor 86.1 5.6 0.00012 33.8 8.8 72 138-218 6-78 (100)
289 COG4799 Acetyl-CoA carboxylase 85.7 2.1 4.7E-05 47.5 7.2 77 413-492 110-194 (526)
290 TIGR02886 spore_II_AA anti-sig 85.4 4.1 9E-05 34.8 7.6 69 138-215 6-75 (106)
291 PF12683 DUF3798: Protein of u 85.2 3.4 7.3E-05 42.2 7.8 128 163-309 46-198 (275)
292 PF08496 Peptidase_S49_N: Pept 84.6 1.1 2.3E-05 42.2 3.8 50 137-194 96-145 (155)
293 cd07043 STAS_anti-anti-sigma_f 84.4 7.3 0.00016 32.2 8.5 70 138-217 6-76 (99)
294 COG0793 Prc Periplasmic protea 84.0 4.1 8.9E-05 44.2 8.4 85 162-247 216-329 (406)
295 TIGR00377 ant_ant_sig anti-ant 83.8 6.8 0.00015 33.4 8.3 72 137-217 9-81 (108)
296 COG0793 Prc Periplasmic protea 83.1 7 0.00015 42.5 9.7 85 386-483 201-309 (406)
297 COG0074 SucD Succinyl-CoA synt 83.0 2.4 5.3E-05 43.5 5.7 56 415-473 185-240 (293)
298 cd06567 Peptidase_S41 C-termin 82.9 8.6 0.00019 37.6 9.6 81 390-483 61-166 (224)
299 cd07563 Peptidase_S41_IRBP Int 82.6 17 0.00037 36.3 11.8 121 333-484 28-180 (250)
300 PF08496 Peptidase_S49_N: Pept 82.3 1 2.2E-05 42.4 2.6 52 386-447 96-147 (155)
301 PTZ00187 succinyl-CoA syntheta 82.2 3 6.4E-05 43.8 6.2 54 417-473 211-264 (317)
302 COG3904 Predicted periplasmic 79.0 7.8 0.00017 38.2 7.4 93 388-496 74-167 (245)
303 PLN02522 ATP citrate (pro-S)-l 78.8 4.2 9E-05 46.3 6.4 53 418-473 210-262 (608)
304 PLN00049 carboxyl-terminal pro 76.8 18 0.00038 39.0 10.3 84 387-483 193-301 (389)
305 cd07561 Peptidase_S41_CPP_like 75.8 21 0.00047 36.1 10.1 85 386-483 62-182 (256)
306 cd06567 Peptidase_S41 C-termin 75.5 14 0.00031 36.0 8.5 80 141-231 61-165 (224)
307 TIGR00225 prc C-terminal pepti 75.4 19 0.00042 37.7 10.0 84 387-483 150-256 (334)
308 PLN00125 Succinyl-CoA ligase [ 75.0 5.1 0.00011 41.8 5.3 54 417-473 192-245 (300)
309 cd07042 STAS_SulP_like_sulfate 74.9 28 0.0006 29.1 9.2 72 137-217 6-79 (107)
310 PTZ00187 succinyl-CoA syntheta 74.6 6.1 0.00013 41.5 5.8 79 137-219 168-260 (317)
311 cd07560 Peptidase_S41_CPP C-te 73.7 23 0.00049 34.8 9.4 81 390-483 50-153 (211)
312 PF03572 Peptidase_S41: Peptid 72.5 11 0.00023 34.8 6.4 70 413-483 15-112 (169)
313 PLN00125 Succinyl-CoA ligase [ 71.4 7.1 0.00015 40.7 5.4 79 137-219 149-241 (300)
314 COG0825 AccA Acetyl-CoA carbox 71.2 3.4 7.4E-05 42.6 2.9 65 431-495 150-222 (317)
315 TIGR01019 sucCoAalpha succinyl 70.3 7.9 0.00017 40.1 5.5 78 137-219 142-233 (286)
316 PRK11186 carboxy-terminal prot 70.0 26 0.00056 40.6 10.0 84 387-483 352-459 (667)
317 PF02601 Exonuc_VII_L: Exonucl 69.7 13 0.00028 38.6 7.0 74 414-493 56-137 (319)
318 TIGR02717 AcCoA-syn-alpha acet 69.2 10 0.00022 41.6 6.4 54 417-474 190-243 (447)
319 COG0045 SucC Succinyl-CoA synt 67.4 31 0.00067 37.1 9.2 74 409-484 288-364 (387)
320 PLN00124 succinyl-CoA ligase [ 66.1 35 0.00076 37.3 9.6 71 410-482 325-398 (422)
321 PLN00049 carboxyl-terminal pro 66.0 29 0.00063 37.4 9.0 41 163-204 208-249 (389)
322 PRK05678 succinyl-CoA syntheta 65.7 11 0.00023 39.2 5.4 78 137-219 144-235 (291)
323 TIGR00225 prc C-terminal pepti 64.2 39 0.00084 35.5 9.3 82 139-231 151-255 (334)
324 TIGR01019 sucCoAalpha succinyl 64.1 15 0.00032 38.1 6.0 53 417-473 185-237 (286)
325 PRK00286 xseA exodeoxyribonucl 63.2 27 0.00059 38.0 8.3 69 414-492 177-253 (438)
326 PLN02522 ATP citrate (pro-S)-l 63.0 13 0.00029 42.3 5.9 78 137-219 166-258 (608)
327 KOG1255 Succinyl-CoA synthetas 61.6 28 0.00061 35.2 7.1 80 137-219 175-270 (329)
328 COG1570 XseA Exonuclease VII, 61.5 20 0.00044 39.2 6.6 72 414-492 177-254 (440)
329 PRK06091 membrane protein FdrA 59.5 15 0.00031 41.5 5.3 78 137-219 192-287 (555)
330 TIGR00237 xseA exodeoxyribonuc 59.3 19 0.00041 39.4 6.1 69 415-492 172-248 (432)
331 PRK00286 xseA exodeoxyribonucl 59.2 98 0.0021 33.8 11.6 73 163-242 177-254 (438)
332 smart00245 TSPc tail specific 59.0 76 0.0016 30.4 9.7 83 388-483 28-134 (192)
333 cd07560 Peptidase_S41_CPP C-te 58.4 48 0.001 32.5 8.2 80 141-231 50-152 (211)
334 PRK05678 succinyl-CoA syntheta 57.3 22 0.00048 36.9 5.9 53 417-473 187-239 (291)
335 PRK11186 carboxy-terminal prot 57.3 48 0.001 38.4 9.1 67 164-231 368-458 (667)
336 TIGR02814 pfaD_fam PfaD family 57.2 1.3E+02 0.0029 33.2 12.0 115 180-304 183-347 (444)
337 cd07562 Peptidase_S41_TRI Tric 57.0 58 0.0013 32.9 8.9 80 387-483 86-185 (266)
338 KOG1255 Succinyl-CoA synthetas 56.2 25 0.00055 35.5 5.7 55 416-473 217-274 (329)
339 COG1366 SpoIIAA Anti-anti-sigm 55.8 92 0.002 27.2 8.9 71 139-218 12-84 (117)
340 PF01740 STAS: STAS domain; I 55.6 86 0.0019 26.9 8.6 62 387-459 7-77 (117)
341 PRK05395 3-dehydroquinate dehy 55.4 63 0.0014 30.2 7.9 43 417-466 56-98 (146)
342 KOG1683 Hydroxyacyl-CoA dehydr 55.1 10 0.00022 40.4 3.0 148 164-361 84-255 (380)
343 PRK06091 membrane protein FdrA 55.1 22 0.00049 40.0 5.8 55 417-475 239-293 (555)
344 cd07561 Peptidase_S41_CPP_like 53.9 41 0.00089 34.1 7.1 59 137-206 62-121 (256)
345 KOG1447 GTP-specific succinyl- 52.7 48 0.001 34.1 7.1 68 411-480 317-387 (412)
346 TIGR01016 sucCoAbeta succinyl- 52.6 39 0.00086 36.2 7.1 55 161-218 292-349 (386)
347 PF02601 Exonuc_VII_L: Exonucl 52.1 48 0.001 34.4 7.5 74 163-242 56-137 (319)
348 cd07041 STAS_RsbR_RsbS_like Su 51.4 87 0.0019 26.6 7.9 71 388-469 9-82 (109)
349 PRK13015 3-dehydroquinate dehy 51.1 78 0.0017 29.6 7.7 44 416-466 55-98 (146)
350 cd00466 DHQase_II Dehydroquina 51.1 79 0.0017 29.3 7.7 45 415-466 52-96 (140)
351 PRK02929 L-arabinose isomerase 50.4 96 0.0021 34.8 9.8 127 164-302 57-237 (499)
352 PRK14046 malate--CoA ligase su 50.3 40 0.00088 36.4 6.8 55 161-218 292-349 (392)
353 TIGR01088 aroQ 3-dehydroquinat 49.9 87 0.0019 29.1 7.8 45 415-466 52-96 (141)
354 PLN02235 ATP citrate (pro-S)-l 49.8 95 0.0021 34.0 9.4 80 411-492 306-406 (423)
355 cd06844 STAS Sulphate Transpor 49.6 1.2E+02 0.0027 25.4 8.5 67 387-464 6-74 (100)
356 TIGR02886 spore_II_AA anti-sig 48.9 39 0.00084 28.7 5.2 41 387-438 6-46 (106)
357 PF03709 OKR_DC_1_N: Orn/Lys/A 48.6 32 0.0007 30.3 4.8 48 169-219 28-75 (115)
358 CHL00073 chlN photochlorophyll 48.5 53 0.0012 36.3 7.4 110 415-529 82-234 (457)
359 PRK14046 malate--CoA ligase su 47.9 95 0.0021 33.6 9.1 66 413-481 293-362 (392)
360 PRK00696 sucC succinyl-CoA syn 47.3 51 0.0011 35.3 6.9 55 161-218 292-349 (388)
361 TIGR01016 sucCoAbeta succinyl- 45.3 54 0.0012 35.1 6.8 91 385-478 254-359 (386)
362 PF03572 Peptidase_S41: Peptid 45.2 43 0.00094 30.6 5.3 68 164-232 17-112 (169)
363 cd07562 Peptidase_S41_TRI Tric 44.9 1E+02 0.0022 31.1 8.4 81 137-232 85-185 (266)
364 PLN02235 ATP citrate (pro-S)-l 43.8 50 0.0011 36.1 6.2 57 160-219 306-377 (423)
365 COG0528 PyrH Uridylate kinase 43.4 72 0.0016 32.2 6.7 102 178-282 3-114 (238)
366 COG0045 SucC Succinyl-CoA synt 42.8 75 0.0016 34.3 7.1 58 160-219 290-349 (387)
367 cd07563 Peptidase_S41_IRBP Int 42.6 1.1E+02 0.0025 30.3 8.3 66 165-233 83-180 (250)
368 COG0757 AroQ 3-dehydroquinate 42.2 1.7E+02 0.0037 27.2 8.3 24 441-466 74-97 (146)
369 PF01220 DHquinase_II: Dehydro 41.6 41 0.00089 31.2 4.4 45 416-467 54-98 (140)
370 PLN00124 succinyl-CoA ligase [ 41.3 73 0.0016 34.9 7.0 57 160-219 326-385 (422)
371 PF13466 STAS_2: STAS domain 41.2 1.5E+02 0.0033 23.5 7.4 62 144-216 1-63 (80)
372 TIGR00815 sulP high affinity s 41.1 1.1E+02 0.0025 34.5 8.8 69 139-216 454-531 (563)
373 PF03709 OKR_DC_1_N: Orn/Lys/A 40.2 41 0.00088 29.7 4.1 52 418-471 26-77 (115)
374 cd03557 L-arabinose_isomerase 40.2 1.9E+02 0.0042 32.3 10.2 109 164-300 51-160 (484)
375 TIGR00377 ant_ant_sig anti-ant 40.0 1.7E+02 0.0037 24.5 7.9 41 387-438 10-50 (108)
376 PF03060 NMO: Nitronate monoox 39.8 42 0.00092 35.2 4.8 161 179-355 156-329 (330)
377 COG3033 TnaA Tryptophanase [Am 39.7 99 0.0021 33.3 7.3 71 157-228 164-236 (471)
378 cd01972 Nitrogenase_VnfE_like 38.7 1.9E+02 0.0041 31.4 9.8 104 415-523 74-201 (426)
379 COG0311 PDX2 Predicted glutami 38.2 69 0.0015 31.2 5.5 59 140-216 2-77 (194)
380 COG0426 FpaA Uncharacterized f 37.6 3.3E+02 0.0071 29.6 11.0 132 137-300 245-385 (388)
381 PF13090 PP_kinase_C: Polyphos 37.4 78 0.0017 33.7 6.2 76 163-242 19-103 (352)
382 KOG0540 3-Methylcrotonyl-CoA c 36.7 1.5E+02 0.0032 32.8 8.1 70 178-248 383-463 (536)
383 TIGR03705 poly_P_kin polyphosp 36.1 76 0.0016 36.9 6.4 75 162-240 339-422 (672)
384 PF02684 LpxB: Lipid-A-disacch 35.9 1.6E+02 0.0034 31.8 8.4 80 169-269 72-158 (373)
385 PF01220 DHquinase_II: Dehydro 35.7 54 0.0012 30.4 4.2 64 165-236 54-123 (140)
386 PRK05395 3-dehydroquinate dehy 35.6 54 0.0012 30.6 4.1 64 165-236 55-124 (146)
387 TIGR01088 aroQ 3-dehydroquinat 35.1 55 0.0012 30.4 4.1 65 165-237 53-123 (141)
388 PLN02409 serine--glyoxylate am 34.6 5.9E+02 0.013 27.1 14.3 78 162-243 121-203 (401)
389 TIGR02826 RNR_activ_nrdG3 anae 34.0 2.2E+02 0.0049 26.3 8.1 72 161-239 45-117 (147)
390 cd04742 NPD_FabD 2-Nitropropan 33.9 4.3E+02 0.0092 29.0 11.4 79 180-265 178-273 (418)
391 PRK05443 polyphosphate kinase; 33.1 87 0.0019 36.5 6.3 75 162-240 348-431 (691)
392 PRK13015 3-dehydroquinate dehy 32.9 67 0.0014 30.0 4.3 64 165-236 55-124 (146)
393 PRK00696 sucC succinyl-CoA syn 32.7 1.4E+02 0.0029 32.1 7.4 81 387-470 256-351 (388)
394 PRK11660 putative transporter; 32.5 1.7E+02 0.0037 33.1 8.5 65 138-214 460-525 (568)
395 cd00466 DHQase_II Dehydroquina 31.7 71 0.0015 29.7 4.2 47 165-219 53-100 (140)
396 cd00578 L-fuc_L-ara-isomerases 31.6 3E+02 0.0065 30.1 10.0 105 163-275 48-200 (452)
397 TIGR01284 alt_nitrog_alph nitr 31.6 1.4E+02 0.0031 32.8 7.5 107 164-272 109-234 (457)
398 smart00245 TSPc tail specific 31.2 1.9E+02 0.0041 27.6 7.5 56 139-205 28-84 (192)
399 PF02610 Arabinose_Isome: L-ar 30.6 74 0.0016 34.0 4.8 124 163-292 56-227 (359)
400 KOG0456 Aspartate kinase [Amin 30.0 48 0.001 35.8 3.2 59 240-304 401-459 (559)
401 KOG0540 3-Methylcrotonyl-CoA c 29.3 61 0.0013 35.6 3.9 85 161-247 130-226 (536)
402 COG2240 PdxK Pyridoxal/pyridox 28.0 1.2E+02 0.0026 31.4 5.6 65 165-232 59-125 (281)
403 PRK01021 lpxB lipid-A-disaccha 28.0 2.4E+02 0.0052 32.4 8.5 82 167-269 298-386 (608)
404 TIGR00237 xseA exodeoxyribonuc 27.9 1.4E+02 0.0031 32.6 6.7 75 162-242 170-249 (432)
405 cd07043 STAS_anti-anti-sigma_f 27.5 3.3E+02 0.0071 22.0 8.6 61 387-459 6-67 (99)
406 PRK05632 phosphate acetyltrans 26.8 1.6E+02 0.0034 34.3 7.1 172 167-369 259-433 (684)
407 PF03537 Glyco_hydro_114: Glyc 26.7 1E+02 0.0022 25.1 4.0 35 177-220 24-58 (74)
408 COG0167 PyrD Dihydroorotate de 26.1 5.1E+02 0.011 27.3 10.0 77 416-495 112-199 (310)
409 COG3693 XynA Beta-1,4-xylanase 26.1 3.8E+02 0.0083 28.5 8.9 56 160-218 166-224 (345)
410 PRK14042 pyruvate carboxylase 26.1 8.4E+02 0.018 28.1 12.4 173 161-359 150-333 (596)
411 PF04019 DUF359: Protein of un 25.5 4.8E+02 0.01 23.5 8.4 58 182-241 34-96 (121)
412 COG0079 HisC Histidinol-phosph 24.9 3.8E+02 0.0083 28.5 9.1 69 179-250 145-221 (356)
413 COG1570 XseA Exonuclease VII, 24.3 2E+02 0.0043 31.8 6.7 75 160-241 174-254 (440)
414 PRK14476 nitrogenase molybdenu 24.1 2.7E+02 0.0059 30.7 8.0 104 164-269 77-201 (455)
415 cd01886 EF-G Elongation factor 24.1 7.7E+02 0.017 25.0 13.3 49 166-219 76-124 (270)
416 COG1707 ACT domain-containing 24.1 2.5E+02 0.0055 27.0 6.5 68 162-240 124-192 (218)
417 smart00250 PLEC Plectin repeat 23.6 55 0.0012 23.0 1.6 19 325-343 18-36 (38)
418 TIGR01108 oadA oxaloacetate de 23.3 5.1E+02 0.011 29.7 10.1 172 162-359 146-328 (582)
419 COG1618 Predicted nucleotide k 23.1 2.1E+02 0.0046 27.6 5.8 50 166-219 89-138 (179)
420 cd01971 Nitrogenase_VnfN_like 23.1 2.3E+02 0.0049 30.9 7.1 105 164-270 71-193 (427)
421 COG1090 Predicted nucleoside-d 22.9 79 0.0017 32.8 3.2 72 394-473 181-252 (297)
422 PRK14556 pyrH uridylate kinase 22.8 2.1E+02 0.0045 29.2 6.2 100 180-282 15-125 (249)
423 TIGR01284 alt_nitrog_alph nitr 22.8 2.7E+02 0.0058 30.7 7.6 105 415-523 109-234 (457)
424 COG0047 PurL Phosphoribosylfor 22.7 2.8E+02 0.006 27.9 6.9 71 387-471 2-91 (231)
425 COG0659 SUL1 Sulfate permease 22.6 3.6E+02 0.0077 30.7 8.7 67 139-215 443-510 (554)
426 COG0763 LpxB Lipid A disacchar 22.6 3.2E+02 0.0069 29.6 7.8 65 183-267 88-159 (381)
427 cd07062 Peptidase_S66_mccF_lik 22.2 1.2E+02 0.0026 31.5 4.6 52 164-220 51-104 (308)
428 PLN02832 glutamine amidotransf 21.8 2.9E+02 0.0063 28.1 7.0 61 140-218 3-79 (248)
429 PF01990 ATP-synt_F: ATP synth 21.7 2.1E+02 0.0044 24.2 5.2 50 163-219 26-76 (95)
430 PRK13695 putative NTPase; Prov 21.6 4.1E+02 0.0088 24.6 7.7 64 171-243 90-153 (174)
431 TIGR03800 PLP_synth_Pdx2 pyrid 21.2 3.2E+02 0.007 26.1 7.0 37 178-218 35-77 (184)
432 PRK11267 biopolymer transport 20.6 6.4E+02 0.014 22.9 11.2 106 105-219 13-134 (141)
433 PRK00766 hypothetical protein; 20.5 2.6E+02 0.0057 27.3 6.2 57 163-225 55-113 (194)
434 COG1537 PelA Predicted RNA-bin 20.5 1.1E+03 0.023 25.4 11.8 38 301-350 258-299 (352)
435 PF00763 THF_DHG_CYH: Tetrahyd 20.4 1.4E+02 0.003 26.5 4.0 33 160-192 68-100 (117)
436 PF01990 ATP-synt_F: ATP synth 20.4 2.5E+02 0.0054 23.7 5.4 52 414-472 26-79 (95)
437 PLN02727 NAD kinase 20.2 2.6E+02 0.0056 33.8 7.0 62 168-231 299-362 (986)
438 COG0520 csdA Selenocysteine ly 20.2 2.3E+02 0.005 30.8 6.3 138 347-505 94-240 (405)
No 1
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=100.00 E-value=3.1e-72 Score=620.54 Aligned_cols=395 Identities=28% Similarity=0.403 Sum_probs=360.7
Q ss_pred cccccCCeEEEEEEee-eeccCcccc-c-----C----CCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHH
Q 009327 133 WERVRKGSVLTMKLRG-QIADQLKSR-F-----S----SGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEI 200 (537)
Q Consensus 133 ~~~~~~~~VavI~l~G-~I~~~~~~~-~-----~----~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI 200 (537)
.+..++++|++|+++| .|++..... + . ..+++++++++|++|++|++||||||++|+ |||+++++++|
T Consensus 36 ~~~~~~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei 115 (584)
T TIGR00705 36 SQKLVSSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEI 115 (584)
T ss_pred CcCCCCCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHH
Confidence 3456789999999995 999876531 1 1 247899999999999999999999999997 57789999999
Q ss_pred HHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 201 RRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+++|++||+++||||||++.++|+||||||+||+|||+|.+.+|++|+....+||+++|+|+||+++++++|+||++++|
T Consensus 116 ~~ai~~fk~sgKpVvA~~~~~~s~~YylAs~AD~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~ep 195 (584)
T TIGR00705 116 GSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEP 195 (584)
T ss_pred HHHHHHHHhcCCeEEEEEccccchhhhhhhhCCEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcc--------cHHHHHHcCCceeecCchHHHHH
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVY--------KVERLKEEGFITNVLYDDEVISM 352 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~--------ta~eAle~GLVD~i~~~dd~i~~ 352 (537)
|+|++||+++|+++|.+++++|++|++.|+++|+++.+++++++++++| ++++|+++||||++++.+|+.+.
T Consensus 196 f~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de~~~~ 275 (584)
T TIGR00705 196 FSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAGKA 275 (584)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 89999999999999999999999
Q ss_pred HHHHhCCCCCCCCCeeecccccccccccccccCCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCC
Q 009327 353 LKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYK 432 (537)
Q Consensus 353 l~~~~g~~~~~~~~~v~y~~y~~~~~~~~~~~~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vr 432 (537)
+++.+|.+++++++.+++.+|....++. ...++.|++|+++|+|..+.+.. .....+.+.+.|+++.+|++||
T Consensus 276 l~~~~g~~~~~~~~~v~~~~y~~~~~~~---~~~~~~vavI~~~G~I~~~~~~~----~~~~~~~~~~~l~~a~~D~~Vk 348 (584)
T TIGR00705 276 LKFLFEDDYDKAKNFISLDDYNRDRPQR---HDVQDKIGIVHLEGPIADGRDTE----GNTGGDTVAALLRVARSDPDIK 348 (584)
T ss_pred HHHHhCCCccCCcceeeHHHhhhhcccc---cCCCCeEEEEEEEEEEcCCCCcc----cccCHHHHHHHHHHHhhCCCce
Confidence 9999998655678999999997654431 23578999999999998654322 2345678999999999999999
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHH
Q 009327 433 AAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYE 511 (537)
Q Consensus 433 aVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~ 511 (537)
+|||++|||||++.+++.|+++|+.+++ +|||||+|+|+|+|||||||++||.|+|+|+|.||||||+...+++.++++
T Consensus 349 aIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~ 428 (584)
T TIGR00705 349 AVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLD 428 (584)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHH
Confidence 9999999999999999999999998865 699999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEeecccCCcccCCccCCCC
Q 009327 512 KIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 512 k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
|+|++.+.+++|+|+++ +| .||+
T Consensus 429 klGi~~~~~~t~~~~~~-s~-~~~~ 451 (584)
T TIGR00705 429 RIGVHVDGVSTHELANV-SL-LRPL 451 (584)
T ss_pred hcCCceEEEeccCcCCC-CC-CCCC
Confidence 99999999999999997 66 5665
No 2
>PRK10949 protease 4; Provisional
Probab=100.00 E-value=1.2e-71 Score=616.05 Aligned_cols=392 Identities=26% Similarity=0.399 Sum_probs=353.5
Q ss_pred ccccCCeEEEEEEeeeeccCcccc--c----------C----CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-HHH
Q 009327 134 ERVRKGSVLTMKLRGQIADQLKSR--F----------S----SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGK 196 (537)
Q Consensus 134 ~~~~~~~VavI~l~G~I~~~~~~~--~----------~----~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~-~~~ 196 (537)
...+++.|++|+++|.|+++.... + . ..+++.+++++|++|++||+|+||||++|+|||. ++.
T Consensus 51 ~~~~~~~vL~ldl~G~lve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~ 130 (618)
T PRK10949 51 PETASRGALLLDISGVIVDKPSSSNKLSQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPS 130 (618)
T ss_pred ccCCCCeEEEEECCCcccCCCCCCCcHHHHhhhhcccCCCccccccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHH
Confidence 346789999999999999875521 1 0 1377889999999999999999999999999765 567
Q ss_pred HHHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 197 VEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 197 seeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
.++|+++|++||++|||||||.+.+++++||||++||+||++|.+.+|++|+....+||+++|+|+||+++++++|+||+
T Consensus 131 ~~eI~~ai~~fk~sGKpVvA~~~~~~s~~YyLASaAD~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKs 210 (618)
T PRK10949 131 MQYIGKALREFRDSGKPVYAVGDSYSQGQYYLASFANKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKS 210 (618)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCccchhhhhhhhCCEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHcc--------CcccHHHHHHcCCceeecCchH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND--------GVYKVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g--------~v~ta~eAle~GLVD~i~~~dd 348 (537)
+++||+|++||+++||+++.+++.+|++|++.|+++|+++.+++...+++ ..+++++|+++||||++++.+|
T Consensus 211 A~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de 290 (618)
T PRK10949 211 AVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAE 290 (618)
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHH
Confidence 99999999999999999999999999999999999999999999655443 3479999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCCCeeecccccccccccccccCCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHh
Q 009327 349 VISMLKERLGVQKD-KNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE 427 (537)
Q Consensus 349 ~i~~l~~~~g~~~~-~~~~~v~y~~y~~~~~~~~~~~~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 427 (537)
+.+.+++.+|.+++ ++++.+++.+|....+ ...++.||||+++|+|.++.+.. +....+.+.+.|+++.+
T Consensus 291 ~~~~l~~~~g~~~~~~~~~~v~~~~y~~~~~-----~~~~~~Iavi~~~G~I~~g~~~~----g~~~~~~~~~~l~~a~~ 361 (618)
T PRK10949 291 IEKALTKAFGWSKTDKNYRAISIYDYALKTP-----ADTGGSIAVIFANGAIMDGEETP----GNVGGDTTAAQIRDARL 361 (618)
T ss_pred HHHHHHHHhCCCccCCccceeeHHHhhcccc-----CCCCCeEEEEEEEEEEcCCCCcC----CCcCHHHHHHHHHHHHh
Confidence 99999999997543 4688899999865321 23568999999999998754321 23456889999999999
Q ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccH
Q 009327 428 SKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNL 506 (537)
Q Consensus 428 d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~ 506 (537)
|++||+|||++|||||++.+++.|+++|+.+++ +|||||+|++.|+|||||||++||.|+|+|+|.+|||||++..+++
T Consensus 362 D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~ 441 (618)
T PRK10949 362 DPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTV 441 (618)
T ss_pred CCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCH
Confidence 999999999999999999999999999998864 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 507 GKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 507 ~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
+++++|+|++.+.+++|+|+++ ++ .||+
T Consensus 442 ~~ll~klGV~~~~~~~~~~~~~-~~-~~~~ 469 (618)
T PRK10949 442 ENSLDSIGVHTDGVSTSPLADV-SI-TKAL 469 (618)
T ss_pred HHHHHhcCCceeEEeccccCCc-cc-cCCC
Confidence 9999999999999999999986 66 5665
No 3
>PRK10949 protease 4; Provisional
Probab=100.00 E-value=1.3e-46 Score=416.66 Aligned_cols=246 Identities=15% Similarity=0.231 Sum_probs=225.5
Q ss_pred CCccccChhhHHHHHHHHHHHhcCCcccccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe
Q 009327 108 GEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI 187 (537)
Q Consensus 108 ~~~~~v~~~~y~~~~~~~~~~~~~~~~~~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I 187 (537)
.++++|++.+|... . +...++.||||+++|+|+++... .+.++.+.+.+.|++|++|++||||||||
T Consensus 306 ~~~~~v~~~~y~~~---------~--~~~~~~~Iavi~~~G~I~~g~~~--~g~~~~~~~~~~l~~a~~D~~vkaVvLrI 372 (618)
T PRK10949 306 KNYRAISIYDYALK---------T--PADTGGSIAVIFANGAIMDGEET--PGNVGGDTTAAQIRDARLDPKVKAIVLRV 372 (618)
T ss_pred CccceeeHHHhhcc---------c--cCCCCCeEEEEEEEEEEcCCCCc--CCCcCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 35789999999541 1 13346899999999999987542 35688999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcce
Q 009327 188 EPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 188 nSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
|||||++.++++|+++|+++|+++||||+++ ++|+||||||||+||+|||+|+|++|||||++..++++++++|+||+.
T Consensus 373 nSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~ 452 (618)
T PRK10949 373 NSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHT 452 (618)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCce
Confidence 9999999999999999999999999999988 489999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
+.+++++|++. +++ +++|+++++.+|.+++++|++|++.|+++|+++.++++++++|++|+|++|+++||||+++++
T Consensus 453 ~~~~~~~~~~~-~~~--~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~ 529 (618)
T PRK10949 453 DGVSTSPLADV-SIT--KALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDF 529 (618)
T ss_pred eEEeccccCCc-ccc--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCH
Confidence 99999999975 443 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCCCeeeccc
Q 009327 347 DEVISMLKERLGVQKDKNLPMVDYRK 372 (537)
Q Consensus 347 dd~i~~l~~~~g~~~~~~~~~v~y~~ 372 (537)
+|+++.+++++|++ ++.++.|++
T Consensus 530 ~~ai~~a~~~a~~~---~~~v~~~~~ 552 (618)
T PRK10949 530 DDAVAKAAELAKLK---QWHLNWYVD 552 (618)
T ss_pred HHHHHHHHHHcCCC---CceEEEecC
Confidence 99999999999995 577777764
No 4
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=100.00 E-value=2.8e-45 Score=361.50 Aligned_cols=212 Identities=38% Similarity=0.601 Sum_probs=201.9
Q ss_pred EEEEeeeeccCcccc--------cCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeE
Q 009327 143 TMKLRGQIADQLKSR--------FSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFI 214 (537)
Q Consensus 143 vI~l~G~I~~~~~~~--------~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpV 214 (537)
+|+++|.|.+..... ..+..+++++++.|++|++||+|++|||++|||||++.++++|+++|+++|+++|||
T Consensus 2 ~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpV 81 (222)
T cd07018 2 VLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPV 81 (222)
T ss_pred EEcCCCcccccCCCCChhhhccCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeE
Confidence 688899998775431 124688999999999999999999999999999999999999999999999899999
Q ss_pred EEEecCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHH
Q 009327 215 IGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEML 294 (537)
Q Consensus 215 va~v~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~l 294 (537)
|||++.|+|||||||++||+|||+|++.+|++||.+..+|++++|+|+||+++++++|+||++++||++++||+++++++
T Consensus 82 ia~~~~~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~ 161 (222)
T cd07018 82 IAYADGYSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQT 161 (222)
T ss_pred EEEeCCCCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 295 TALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 295 q~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
+++++++|++|++.|+++|+++.+.+++++++++|++++|+++||||++++.+|+++.++
T Consensus 162 ~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l~ 221 (222)
T cd07018 162 QALLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLK 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998875
No 5
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=100.00 E-value=1.9e-43 Score=391.38 Aligned_cols=250 Identities=16% Similarity=0.222 Sum_probs=226.8
Q ss_pred CCccccChhhHHHHHHHHHHHhcCCcccccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe
Q 009327 108 GEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI 187 (537)
Q Consensus 108 ~~~~~v~~~~y~~~~~~~~~~~~~~~~~~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I 187 (537)
+++++|++.+|.... ++....+++|++|+++|+|.++... .+.++.+.+.+.|++|++|++||+|||+|
T Consensus 286 ~~~~~v~~~~y~~~~---------~~~~~~~~~vavI~~~G~I~~~~~~--~~~~~~~~~~~~l~~a~~D~~VkaIVLri 354 (584)
T TIGR00705 286 KAKNFISLDDYNRDR---------PQRHDVQDKIGIVHLEGPIADGRDT--EGNTGGDTVAALLRVARSDPDIKAVVLRI 354 (584)
T ss_pred CCcceeeHHHhhhhc---------ccccCCCCeEEEEEEEEEEcCCCCc--ccccCHHHHHHHHHHHhhCCCceEEEEEe
Confidence 478999999997632 2222357899999999999986432 24567899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcce
Q 009327 188 EPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 188 nSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
|||||++.++++|+++|.++|+++||||++++ .|+||||||||+||+|||+|++.+|||||++..++++++++|+||++
T Consensus 355 nSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~ 434 (584)
T TIGR00705 355 NSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHV 434 (584)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCce
Confidence 99999999999999999999999999999985 79999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
+.+++|+||++ +++ +++|+++++.+|..++++|++|++.|+++|+++.++++.+++|++|+|+||+++||||+++++
T Consensus 435 ~~~~t~~~~~~-s~~--~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~ 511 (584)
T TIGR00705 435 DGVSTHELANV-SLL--RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL 511 (584)
T ss_pred EEEeccCcCCC-CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH
Confidence 99999999987 665 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCCCeeecccc
Q 009327 347 DEVISMLKERLGVQKDKNLPMVDYRKY 373 (537)
Q Consensus 347 dd~i~~l~~~~g~~~~~~~~~v~y~~y 373 (537)
+|+++.+++++++++ ++.+..|++.
T Consensus 512 ~~Ai~~a~~la~~~~--~~~v~~~~~~ 536 (584)
T TIGR00705 512 DEAVAKAAKLAHCRE--QWSVEVYKDS 536 (584)
T ss_pred HHHHHHHHHHcCCCC--CceEEEeCCC
Confidence 999999999999842 4666666543
No 6
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=100.00 E-value=4.2e-43 Score=342.48 Aligned_cols=206 Identities=22% Similarity=0.375 Sum_probs=197.5
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
.|+||+++|+|. .+.+++.+.|+++++|++|++|||++|||||++.++++|+++|++++ ++||||++++
T Consensus 1 ~v~vi~i~g~i~----------~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~-~~kpvia~v~ 69 (207)
T TIGR00706 1 TIAILPVSGAIA----------VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLK-AKKPVVASMG 69 (207)
T ss_pred CEEEEEEEEEEe----------cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 489999999998 14689999999999999999999999999999999999999999997 6899999997
Q ss_pred -CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 220 -~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
.|+|+|||||++||+|||+|++.+|++|+.+..++++++|+|+||+++++++|+||++++|| +++|+++++.+++++
T Consensus 70 g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~--~~~s~~~~e~~~~~l 147 (207)
T TIGR00706 70 GVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT--RELTPEERDILQNLV 147 (207)
T ss_pred CccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC--CCCCHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
+++|++|++.|+++||++.+++++++++++|++++|+++||||++++++++++.++++.|
T Consensus 148 ~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~~~~ 207 (207)
T TIGR00706 148 NESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAELSG 207 (207)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999988654
No 7
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=7.6e-43 Score=360.70 Aligned_cols=215 Identities=23% Similarity=0.327 Sum_probs=204.8
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
.|++|+++|.|....... ..++.+++.+.|+++..||++|+|+|+||||||++.++++|+++|+++++.+ ||+++++
T Consensus 60 ~Iavi~~~G~I~~~~~~~--~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~-PV~v~v~ 136 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPL--RFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKK-PVVVSVG 136 (317)
T ss_pred EEEEEEeeeeeecCCCcc--ccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcC-CEEEEEC
Confidence 799999999999875432 2678899999999999999999999999999999999999999999998876 9999996
Q ss_pred -CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 220 -~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
+||||||||||+||+|||+|+|++|||||++..+++.++++|+||+.+.+++|+||+.++++ +++++++++.+|..+
T Consensus 137 ~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~--~~~t~e~~~~~q~~~ 214 (317)
T COG0616 137 GYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPF--RPLTEEEREILQKEI 214 (317)
T ss_pred CeecchhhhhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcc--cCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
++.|+.|++.|+++|++..+++..+++|++|+|++|+++||||++++.++++..+++..+.
T Consensus 215 ~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~~ 275 (317)
T COG0616 215 DETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGV 275 (317)
T ss_pred HHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999988763
No 8
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=100.00 E-value=4.9e-42 Score=336.59 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=197.8
Q ss_pred eEEEEEEeeeeccCccc--ccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEE
Q 009327 140 SVLTMKLRGQIADQLKS--RFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY 217 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~--~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~ 217 (537)
+|++|+++|+|.+.... .+.+..++.++.++|+++++|++|++|||++|+|||++..+++|+++|+++++ +|||||+
T Consensus 1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~-~KpViA~ 79 (214)
T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARA-GKPIVAF 79 (214)
T ss_pred CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhc-CCCEEEE
Confidence 48999999999987442 12245679999999999999999999999999999999999999999999987 9999999
Q ss_pred ec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHH
Q 009327 218 VP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (537)
Q Consensus 218 v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~ 296 (537)
++ .|+|+||+||++||+|||+|++.+|++|+.+..++++++++|+||+++++++|+||++++|| ++||+++|+++++
T Consensus 80 v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~--~~~s~~~re~~~~ 157 (214)
T cd07022 80 VNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPD--EPLSDEARARLQA 157 (214)
T ss_pred ECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCC--CCCCHHHHHHHHH
Confidence 97 69999999999999999999999999999999999999999999999999999999999999 5899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 297 ~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
+++.+|++|++.|+++|+++.+++++++ |++|++++|+++||||++++++|+++.+
T Consensus 158 ~l~~~~~~f~~~V~~~R~~~~~~~~~~~-~~~~~~~~Al~~gLvD~i~~~~~~~~~~ 213 (214)
T cd07022 158 EVDALYAMFVAAVARNRGLSAAAVRATE-GGVFRGQEAVAAGLADAVGTLDDALAAL 213 (214)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHhh-cCeeeHHHHHHcCCCcccCCHHHHHHHh
Confidence 9999999999999999999999999988 9999999999999999999999998765
No 9
>PRK11778 putative inner membrane peptidase; Provisional
Probab=100.00 E-value=1.2e-41 Score=349.97 Aligned_cols=209 Identities=18% Similarity=0.224 Sum_probs=186.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY 217 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~ 217 (537)
++.|+||+++|.|..+.. .++.+-+..+.+++.++ ++|||+||||||++.+++.+...|.++|+++|||+++
T Consensus 89 ~~~v~VI~~~G~I~~~~~------~~l~e~i~a~l~~A~~~--~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~ 160 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEV------ESLREEITAILAVAKPG--DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVA 160 (330)
T ss_pred CCeEEEEEEEEEECCCcc------hhhHHHHHHHHHhccCC--CeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEE
Confidence 578999999999987643 23444444444444444 6999999999999999999999999999999999998
Q ss_pred ec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHH
Q 009327 218 VP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (537)
Q Consensus 218 v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~ 296 (537)
++ +|+||||||||+||+|||+|++.+|||||+++.+|++++++|+||+++++++|+||++++|| .++|+++|+.+|+
T Consensus 161 v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf--~~~see~Re~~q~ 238 (330)
T PRK11778 161 VDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLF--GENTEEGREKFRE 238 (330)
T ss_pred ECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCC--CCCCHHHHHHHHH
Confidence 86 89999999999999999999999999999999999999999999999999999999999999 5789999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 297 ~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
+++++|+.|++.|+++|+. .+++.+++|++|+|++|+++||||+|++.||++..+.+..+
T Consensus 239 ~Ld~~y~~F~~~Va~~R~~--l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~~~~ 298 (330)
T PRK11778 239 ELEETHQLFKDFVQRYRPQ--LDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMKEHE 298 (330)
T ss_pred HHHHHHHHHHHHHHhcCCc--CCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHhcCC
Confidence 9999999999999999962 35778899999999999999999999999999988776543
No 10
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=100.00 E-value=3.4e-41 Score=329.00 Aligned_cols=206 Identities=25% Similarity=0.407 Sum_probs=196.3
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
.|++|+++|+|.+. +..++.++.++|+.+++|++|++|+|++|||||++...++|+++|+.+++++|||||+++
T Consensus 1 ~v~vi~i~g~i~~~------~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~ 74 (208)
T cd07023 1 KIAVIDIEGTISDG------GGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMG 74 (208)
T ss_pred CEEEEEEEEEEcCC------CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 38999999999965 124788999999999999999999999999999999999999999999989999999997
Q ss_pred -CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 220 -~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
.|+|+||+||++||+|||+|++.+|++|+.+..+|++++|+|+||+++++++|+||++++|+ ++||+++++.+++++
T Consensus 75 g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~--~~~s~~~~e~~~~~l 152 (208)
T cd07023 75 DVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPD--RPLTEEERAILQALV 152 (208)
T ss_pred CcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCC--CCCCHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999996 799999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
+.+|++|++.|+++||++.+++++++++.+|++++|+++||||++++.+++++.+
T Consensus 153 ~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~~~ 207 (208)
T cd07023 153 DDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKA 207 (208)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999988764
No 11
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=100.00 E-value=4.2e-40 Score=322.23 Aligned_cols=208 Identities=15% Similarity=0.229 Sum_probs=196.2
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
.|+||+++|+|++.... .+.++++++.+.|+++.+||+|++|||+++||||++..+++++++|+.+++++|||||+++
T Consensus 1 ~i~v~~~~g~i~~~~~~--~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~ 78 (211)
T cd07019 1 SIGVVFANGAIVDGEET--QGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAG 78 (211)
T ss_pred CEEEEEEEEEEeCCCCC--CCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 48999999999998752 3568899999999999999999999999999999999999999999999999999999997
Q ss_pred -CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEe-ccccccCCcccCCCCCHHHHHHHHHH
Q 009327 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRI-GKYKSAGDQLTRKTMSEENCEMLTAL 297 (537)
Q Consensus 220 -~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~-G~yKsa~~~~t~~~~s~e~~e~lq~~ 297 (537)
.|+|+|||||++||+|||+|++.+|++|+.+..++++++++|+||+++.+++ |.||.. .+++||+|+++.++.+
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~----~~~~~s~e~r~~~~~~ 154 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVS----ITRALPPEAQLGLQLS 154 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCC----CCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998 888842 3689999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 298 LDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 298 l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
++.+|++|++.|+++|+++++++++++++.+|++++|++.||||++++++++++.+
T Consensus 155 ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~~~ 210 (211)
T cd07019 155 IENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA 210 (211)
T ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988765
No 12
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=100.00 E-value=1.4e-35 Score=276.55 Aligned_cols=152 Identities=38% Similarity=0.651 Sum_probs=134.2
Q ss_pred hhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCC
Q 009327 207 FKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285 (537)
Q Consensus 207 lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~ 285 (537)
+++++||||||++ .++|++|||||+||+|||+|++.+|+||+.+..++++++++|+||+++.+++|+||+++ +++++
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~--~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAG--FPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC--CTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCcccccc--CcCCC
Confidence 5678999999996 78899999999999999999999999999999999999999999999999999999998 45699
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCCC
Q 009327 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ 360 (537)
Q Consensus 286 ~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~~ 360 (537)
||+++++.++++++.+|+.|++.|+++|+++.++++++++|++|++++|+++||||++++.+|+++.+++.++++
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v~ 154 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGVK 154 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764
No 13
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.97 E-value=2.6e-29 Score=239.44 Aligned_cols=172 Identities=18% Similarity=0.229 Sum_probs=156.2
Q ss_pred EEEEeeeeccCccc--ccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-
Q 009327 143 TMKLRGQIADQLKS--RFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (537)
Q Consensus 143 vI~l~G~I~~~~~~--~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~- 219 (537)
+|+++|+|++.... .+.+.++++++.+.|+++.+|++|++|||++++|||++...++++++++++++++|||||+++
T Consensus 1 ~i~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G 80 (177)
T cd07014 1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred CEEEEEEEeCCCCcCcCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 48899999987532 223568899999999999999999999999999999999999999999999999999999998
Q ss_pred CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 220 ~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
.|+++||+||++||+|||+|++.+|++|+... ++..+.+++
T Consensus 81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~---------------------------------------~~~~~~~l~ 121 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGV---------------------------------------QLADQLSIE 121 (177)
T ss_pred chhHHHHHHHHhCCEEEECCCCeEEEechHhh---------------------------------------HHHHHHHHH
Confidence 89999999999999999999999999998552 567789999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHH-ccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFI-NDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~-~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
++|++|++.|++.||++.+.+++++ +|.+|++++|++.||||++++.+|+.+.+
T Consensus 122 ~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~l 176 (177)
T cd07014 122 NGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAKL 176 (177)
T ss_pred HHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHHh
Confidence 9999999999999999999998866 68899999999999999999999988765
No 14
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.95 E-value=1.6e-27 Score=222.98 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=144.6
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
||+++|+|++. +.+++++.|+++.+|+++++|+|++|||||++.+.++|+++|+.+ +|||+++++ .|
T Consensus 1 vi~i~g~I~~~---------~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~---~kpvva~~~g~~ 68 (161)
T cd00394 1 VIFINGVIEDV---------SADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS---RKPVIAYVGGQA 68 (161)
T ss_pred CEEEEeEEccc---------hHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHh---CCCEEEEECChh
Confidence 58999999985 468999999999999999999999999999999999999999987 499999997 89
Q ss_pred chhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (537)
Q Consensus 222 aSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~ 301 (537)
+|+||+|+++||+|||.|++.+|++|+....++++ .+++++.++++++.+
T Consensus 69 ~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~------------------------------~~~~~~~~~~~l~~~ 118 (161)
T cd00394 69 ASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNG------------------------------NPTAQEADQRIILYF 118 (161)
T ss_pred HHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCC------------------------------ChHHHHHHHHHHHHH
Confidence 99999999999999999999999999987544332 167899999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceee
Q 009327 302 YGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNV 343 (537)
Q Consensus 302 y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i 343 (537)
|++|++.|+++||++.+++++.+. +..|+++||+++||||+|
T Consensus 119 ~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 119 IARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 999999999999999998887764 788999999999999986
No 15
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.94 E-value=6.6e-27 Score=242.10 Aligned_cols=141 Identities=43% Similarity=0.703 Sum_probs=131.3
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM 468 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v 468 (537)
.||+|+++|+|..+.... ..+..+.+.+.|+++..|+++++|||++|||||++.+++.|+++|++++..|||+++|
T Consensus 60 ~Iavi~~~G~I~~~~~~~----~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v 135 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPL----RFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSV 135 (317)
T ss_pred EEEEEEeeeeeecCCCcc----ccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEE
Confidence 899999999998644322 1456788999999999999999999999999999999999999999997767999999
Q ss_pred CchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccC
Q 009327 469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQ 533 (537)
Q Consensus 469 ~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~ 533 (537)
+++||||||||||+||.|||+|+|.+|||||+...+++.++++|+|++.+.+++|+||+.++|++
T Consensus 136 ~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~ 200 (317)
T COG0616 136 GGYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFR 200 (317)
T ss_pred CCeecchhhhhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999954
No 16
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.94 E-value=1.3e-24 Score=239.01 Aligned_cols=332 Identities=15% Similarity=0.152 Sum_probs=214.9
Q ss_pred CCeEEEEEEeee----eccCcccccC--CCCCHHHHHHHHHHHh-cCCCceEEEEEeCC-----CCCCHHHHH-------
Q 009327 138 KGSVLTMKLRGQ----IADQLKSRFS--SGLSLPQICENFVKAA-YDPRIVGIYLHIEP-----LSCGWGKVE------- 198 (537)
Q Consensus 138 ~~~VavI~l~G~----I~~~~~~~~~--~~~s~~~l~~~L~~A~-~D~~IkaIVL~InS-----pGG~~~~se------- 198 (537)
.+.|++|.++-+ +.+...+..+ +.-.+.++.+.++++. +|+.|++|||+.+. .|+++....
T Consensus 22 ~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~ 101 (550)
T PRK08184 22 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWK 101 (550)
T ss_pred eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchh
Confidence 478999999721 1111000111 1224678899999998 78999999998864 244432210
Q ss_pred --------HHHH-HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeeEEecccccccchhhHhhhcCcce
Q 009327 199 --------EIRR-HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 199 --------eI~~-~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~--s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
+... ....++..+|||||.++ .|.+||+.||++||.+++.+. +.+|...+. .+|+.+
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~-----------~~Gl~P 170 (550)
T PRK08184 102 VNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVP-----------LLGVLP 170 (550)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchh-----------ccccCC
Confidence 1111 12234457899999997 688999999999999999886 677764331 012211
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHccCcccHHHHHHcCCceeecC
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~-~~~g~v~ta~eAle~GLVD~i~~ 345 (537)
... . ...+...|.+......+ ++.|+.++++||++.||||++..
T Consensus 171 ~~g---------g--------------------------~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~ 215 (550)
T PRK08184 171 GTG---------G--------------------------LTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVK 215 (550)
T ss_pred Ccc---------h--------------------------HHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeC
Confidence 100 0 00011123333333333 46799999999999999999998
Q ss_pred chHHHHHHHHH----hCCCCC-CCCCeeeccccc--------ccccccccccCCCCcEEEEEEecccccCC-------CC
Q 009327 346 DDEVISMLKER----LGVQKD-KNLPMVDYRKYS--------GVRRWTLGLTGGGDQIAVIRASGSISRVR-------SP 405 (537)
Q Consensus 346 ~dd~i~~l~~~----~g~~~~-~~~~~v~y~~y~--------~~~~~~~~~~~~~~~VavI~i~G~I~~~~-------~~ 405 (537)
.+++.+.+.+. +..... -+.+-+.+...+ +.+.+.+.. ...++|++|++|+|-.... ..
T Consensus 216 ~d~l~~~a~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~Na~~~~~~~~~ 294 (550)
T PRK08184 216 PSKFDAKVAERAAELAAASDRPADAKGVALTPLERTIDADGLRYRHVDVEI-DRAARTATITVKAPTAAQPADIAGIVAA 294 (550)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCccccccccccccCCceeeEEEEEEE-EccCCEEEEEEeCccccccccccccccc
Confidence 77766655443 333221 111111111111 111222222 2357899999999976510 01
Q ss_pred CCCCCccchHHHHHHHHHHHHh-cCCCCeEEEEe-----CCCCCchHHH--------HH----HHHHHHHhcC-CCCEEE
Q 009327 406 LSLSSSGIIGEQLIEKIRKVRE-SKRYKAAIIRI-----DSPGGDALAS--------DL----MWREIRLLSE-SKPVIA 466 (537)
Q Consensus 406 ~~~~~~~~~~~~l~~~l~~~~~-d~~vraVVL~i-----~SpGG~~~~s--------~~----i~~~i~~~~~-~kPVIA 466 (537)
.-|+.+..+.++|.++|.++.. |++||+|||+. +|.|+++... .. +.+.++.+.. +|||||
T Consensus 295 ~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 374 (550)
T PRK08184 295 GAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFA 374 (550)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 1267788899999999999986 79999999964 3667773110 11 1122333322 899999
Q ss_pred EEC-chhhHHH-HHHHHhcCeEEEc-------CCceee----eeecccCcccHHHHHHH-hCCc
Q 009327 467 SMS-DVAASGG-YYMAMAAGTILAE-------NLTLTG----SIGVVTGKFNLGKLYEK-IGFN 516 (537)
Q Consensus 467 ~v~-G~AasgG-~~lA~a~D~i~A~-------p~a~~G----sIGV~~~~~~~~~L~~k-~G~~ 516 (537)
+|| |+|+||| +.||++||++||+ +++.|| .+|++|..++...|.+. +|..
T Consensus 375 aV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~ 438 (550)
T PRK08184 375 LIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEP 438 (550)
T ss_pred EECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChH
Confidence 997 9999999 9999999999999 999999 79999999999999988 6987
No 17
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.93 E-value=2.7e-24 Score=235.91 Aligned_cols=333 Identities=15% Similarity=0.144 Sum_probs=212.8
Q ss_pred CCeEEEEEEeee----eccCcccccC--CCCCHHHHHHHHHHHh-cCCCceEEEEEeCC-----CCCCHHHHH-------
Q 009327 138 KGSVLTMKLRGQ----IADQLKSRFS--SGLSLPQICENFVKAA-YDPRIVGIYLHIEP-----LSCGWGKVE------- 198 (537)
Q Consensus 138 ~~~VavI~l~G~----I~~~~~~~~~--~~~s~~~l~~~L~~A~-~D~~IkaIVL~InS-----pGG~~~~se------- 198 (537)
++.|++|+++-+ .-+...+..+ +.-.+.+|.+.|+++. .|+.|++|||+..+ .|+++....
T Consensus 18 ~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~ 97 (546)
T TIGR03222 18 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWK 97 (546)
T ss_pred eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchh
Confidence 467999998631 1110000111 1123568899999998 79999999999753 355543210
Q ss_pred -HH-------HHHH-HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeeEEecccccccchhhHhhhcCcce
Q 009327 199 -EI-------RRHV-VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 199 -eI-------~~~I-~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~--s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
.+ .+.+ ..++..+|||||.++ .|.+||+-|+++||.++|.++ +.++...+. ++|+.+
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~-----------~lGl~P 166 (546)
T TIGR03222 98 VNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVP-----------LLGVLP 166 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchh-----------ccCcCC
Confidence 01 0111 233457999999998 688999999999999999986 577764331 022221
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHccCcccHHHHHHcCCceeecC
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v-~~~~~g~v~ta~eAle~GLVD~i~~ 345 (537)
..-. . ......|.+..... +-++.|+.++++||+++||||++..
T Consensus 167 ~~gg---------~--------------------------~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~ 211 (546)
T TIGR03222 167 GTGG---------L--------------------------TRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVK 211 (546)
T ss_pred ccch---------h--------------------------hhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeC
Confidence 1000 0 00000112222223 3356799999999999999999988
Q ss_pred chHHHHHHHH----HhCCCC-CCCCCeeeccccccccc---c---cccc-cCCCCcEEEEEEecccccCC-------CCC
Q 009327 346 DDEVISMLKE----RLGVQK-DKNLPMVDYRKYSGVRR---W---TLGL-TGGGDQIAVIRASGSISRVR-------SPL 406 (537)
Q Consensus 346 ~dd~i~~l~~----~~g~~~-~~~~~~v~y~~y~~~~~---~---~~~~-~~~~~~VavI~i~G~I~~~~-------~~~ 406 (537)
.+++.+.+.+ .+.... .-+.+-|.+....+... . .+.+ ....++|++|++|+|-.... ...
T Consensus 212 ~~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~ 291 (546)
T TIGR03222 212 PSQFDAAIAERAAELAAQSDRPADAKGVQLTPLERTIDEDGVRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQG 291 (546)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhhhcccCCcceeeEEEEEeccCCEEEEEecChhhcCccccccccccc
Confidence 7766555433 333221 11222233221111100 0 0011 13467899999999975411 112
Q ss_pred CCCCccchHHHHHHHHHHHH-hcCCCCeEEEEe-----CCCCCchHH---------HHHH---HHHHHHhcC-CCCEEEE
Q 009327 407 SLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRI-----DSPGGDALA---------SDLM---WREIRLLSE-SKPVIAS 467 (537)
Q Consensus 407 ~~~~~~~~~~~l~~~l~~~~-~d~~vraVVL~i-----~SpGG~~~~---------s~~i---~~~i~~~~~-~kPVIA~ 467 (537)
-|+.+..+.++|.+++.++. +|++||+|||+. +|.|+++.. ...+ .+.+..+.. +|||||+
T Consensus 292 ~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAa 371 (546)
T TIGR03222 292 ANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFAL 371 (546)
T ss_pred cCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 26778889999999999998 459999999974 567777621 1111 112233322 9999999
Q ss_pred E-CchhhHHH-HHHHHhcCeEEE-------cCCceee----eeecccCcccHHHHHHHh-CCc
Q 009327 468 M-SDVAASGG-YYMAMAAGTILA-------ENLTLTG----SIGVVTGKFNLGKLYEKI-GFN 516 (537)
Q Consensus 468 v-~G~AasgG-~~lA~a~D~i~A-------~p~a~~G----sIGV~~~~~~~~~L~~k~-G~~ 516 (537)
| +|+|+||| +.||++||++|| ++++.|| .+|++|..++...|.+.+ |..
T Consensus 372 v~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~ 434 (546)
T TIGR03222 372 IEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEP 434 (546)
T ss_pred ECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCch
Confidence 9 89999999 999999999999 9999999 699999999999999998 853
No 18
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.93 E-value=4.9e-25 Score=216.32 Aligned_cols=147 Identities=30% Similarity=0.372 Sum_probs=133.0
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM 468 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v 468 (537)
.|++|+++|+|.....+.+-..+..+..++.++|+++.+|++|++|||+++|+||++...+.+.++++.++++|||||++
T Consensus 1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v 80 (214)
T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFV 80 (214)
T ss_pred CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999875444322234467899999999999999999999999999999988899999999884479999999
Q ss_pred CchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 469 ~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
+|+|+||||+||++||+|+|+|++.||+||++...+++++|++|+|++.+.+++|+||++.+|+. |+
T Consensus 81 ~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~-~~ 147 (214)
T cd07022 81 NGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDE-PL 147 (214)
T ss_pred CCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999974 54
No 19
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.92 E-value=3.1e-24 Score=209.59 Aligned_cols=135 Identities=44% Similarity=0.731 Sum_probs=126.7
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM 468 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v 468 (537)
.|++|+++|+|.. ..+++.++|+++.+|+++++|||+++||||++..++.++++|+.++++|||||++
T Consensus 1 ~v~vi~i~g~i~~------------s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v 68 (207)
T TIGR00706 1 TIAILPVSGAIAV------------SPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASM 68 (207)
T ss_pred CEEEEEEEEEEec------------CHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4899999999961 3578999999999999999999999999999999999999999885569999999
Q ss_pred CchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 469 ~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
+|.|+||||+||++||.|+|+|++.+|++||+....+++++++|+|++.+.+++|+||++.+|+ +|+
T Consensus 69 ~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~-~~~ 135 (207)
T TIGR00706 69 GGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT-REL 135 (207)
T ss_pred CCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 454
No 20
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.91 E-value=1.3e-23 Score=205.14 Aligned_cols=139 Identities=48% Similarity=0.753 Sum_probs=128.2
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIAS 467 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVIA~ 467 (537)
.|++|+++|+|.+. +..+..++.++|+++.+|+++++|||.++||||++...+.+.+.++.++. +|||||+
T Consensus 1 ~v~vi~i~g~i~~~--------~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~ 72 (208)
T cd07023 1 KIAVIDIEGTISDG--------GGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVAS 72 (208)
T ss_pred CEEEEEEEEEEcCC--------CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 48999999999852 23567899999999999999999999999999999888888888887755 8999999
Q ss_pred ECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 468 v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
++|.|+|+||+||++||.|+|+|++.+|++|+....++++++++|+|++.+.+++|+||++.+|+ +++
T Consensus 73 v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~-~~~ 140 (208)
T cd07023 73 MGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPD-RPL 140 (208)
T ss_pred ECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCC-CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999994 444
No 21
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.91 E-value=9.8e-24 Score=217.54 Aligned_cols=137 Identities=27% Similarity=0.444 Sum_probs=119.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEE
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVI 465 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVI 465 (537)
+++|+||+++|+|..+.. ....+.+...++.+. ++ ++|||++|||||.+.++..++..+.+++. +|||+
T Consensus 89 ~~~v~VI~~~G~I~~~~~-------~~l~e~i~a~l~~A~-~~--~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVv 158 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEV-------ESLREEITAILAVAK-PG--DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLT 158 (330)
T ss_pred CCeEEEEEEEEEECCCcc-------hhhHHHHHHHHHhcc-CC--CeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEE
Confidence 578999999999976321 123355555555544 32 69999999999999998888888877754 79999
Q ss_pred EEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccC
Q 009327 466 ASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQ 533 (537)
Q Consensus 466 A~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~ 533 (537)
+++++.|+||||||||+||.|||.|.+.+|||||+...+++.+|++|+|++.+.+++|+||+.++|+.
T Consensus 159 a~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 159 VAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred EEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 22
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.90 E-value=4.1e-23 Score=198.65 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=132.2
Q ss_pred EEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-
Q 009327 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (537)
Q Consensus 141 VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~- 219 (537)
|++|+++|.|.+.. ...+.+.|+.+.+|+ +++|+|+||||||.+.++++|.+.|.. .+||||++++
T Consensus 1 ~~vv~i~g~I~~~~---------~~~l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~---~~kPvia~v~~ 67 (187)
T cd07020 1 VYVLEINGAITPAT---------ADYLERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILA---SPVPVVVYVYP 67 (187)
T ss_pred CEEEEEeeEEChHH---------HHHHHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHh---CCCCEEEEEec
Confidence 58999999998763 468899999998665 999999999999999999999988874 5899999995
Q ss_pred ---CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHH
Q 009327 220 ---VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (537)
Q Consensus 220 ---~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~ 296 (537)
.|+||||+|+++||+|+|.|++.+|++++....+. ...+....+.
T Consensus 68 ~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~--------------------------------~~~~~~~~~~ 115 (187)
T cd07020 68 SGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGG--------------------------------GGSDPVMEKK 115 (187)
T ss_pred CCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCC--------------------------------CcchHHHHHH
Confidence 79999999999999999999999999987532110 0011222233
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHH-HHccCcccHHHHHHcCCceeecCch-HHHH
Q 009327 297 LLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDD-EVIS 351 (537)
Q Consensus 297 ~l~~~y~~F~~~Va~~Rg~~~~~v~~-~~~g~v~ta~eAle~GLVD~i~~~d-d~i~ 351 (537)
.+..+ ..|...+++.||.+.+.+++ +.+|+.|+++||+++||||++...+ ++++
T Consensus 116 ~~~~~-~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 116 ILNDA-VAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHH-HHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 33333 45788999999999877766 5679999999999999999998665 4543
No 23
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.90 E-value=6.6e-23 Score=200.86 Aligned_cols=135 Identities=31% Similarity=0.473 Sum_probs=122.8
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIAS 467 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVIA~ 467 (537)
+||||+++|+|.+..+. ..+.+.+++.++|+++.+|++|++|||+++|+||++...+.+.+.++.++. +|||||+
T Consensus 1 ~i~v~~~~g~i~~~~~~----~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~ 76 (211)
T cd07019 1 SIGVVFANGAIVDGEET----QGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVS 76 (211)
T ss_pred CEEEEEEEEEEeCCCCC----CCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 48999999999976542 224567899999999999999999999999999999988888888877654 9999999
Q ss_pred ECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecc-cCCcc
Q 009327 468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISR-GKYAE 527 (537)
Q Consensus 468 v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~-g~~~~ 527 (537)
++|+|+|+||+||++||+|||+|++.+|+||++...+.+++|++|+|++.+.++. |.+|.
T Consensus 77 v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~ 137 (211)
T cd07019 77 AGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV 137 (211)
T ss_pred ECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccC
Confidence 9999999999999999999999999999999999999999999999999999998 77773
No 24
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.90 E-value=2.3e-23 Score=205.65 Aligned_cols=142 Identities=24% Similarity=0.363 Sum_probs=126.3
Q ss_pred EEEEecccccCCCCCC------CCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhc-CCCCE
Q 009327 392 VIRASGSISRVRSPLS------LSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPV 464 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~------~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~-~~kPV 464 (537)
+|.++|.+.......+ ...+..+.+++.++|+++.+|++|++|||+++||||.+..++.+++.|+.++ .+|||
T Consensus 2 ~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpV 81 (222)
T cd07018 2 VLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPV 81 (222)
T ss_pred EEcCCCcccccCCCCChhhhccCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeE
Confidence 4677777765433211 2234567899999999999999999999999999999999999999998886 48999
Q ss_pred EEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCC
Q 009327 465 IASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQR 534 (537)
Q Consensus 465 IA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~ 534 (537)
||++++ |+||||+||++||.|+|.|++.+|+|||+...++++++++|+|++.+.+++|+||++.+|+.|
T Consensus 82 ia~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~ 150 (222)
T cd07018 82 IAYADG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTR 150 (222)
T ss_pred EEEeCC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhc
Confidence 999997 889999999999999999999999999999999999999999999999999999999999875
No 25
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.88 E-value=8e-22 Score=186.80 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=129.6
Q ss_pred EEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe--
Q 009327 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-- 218 (537)
Q Consensus 141 VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-- 218 (537)
|.+|+++|+|.+.. .+.+.+.|++|.+| ++++|+|+||||||.+..+.+|.+.|+. .++||++|+
T Consensus 1 v~vi~i~G~I~~~~---------~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~~~I~~~i~~---~~~pvv~~v~p 67 (172)
T cd07015 1 VYVAQIKGQITSYT---------YDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQQ---SKIPVIIYVYP 67 (172)
T ss_pred CEEEEEeeEECHhH---------HHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHHHHHHHHHHh---cCcCEEEEEec
Confidence 57899999999763 35778888888765 6899999999999999999999999975 579999999
Q ss_pred --cCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHH
Q 009327 219 --PVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (537)
Q Consensus 219 --~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~ 296 (537)
+.|+|+||||+++||+|+|.|++.+|++|+.... | +. .. . +.+..
T Consensus 68 ~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~----------g---------~~----~~------~----~~~~~ 114 (172)
T cd07015 68 PGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY----------S---------QN----GS------I----IEAPP 114 (172)
T ss_pred CCCeehhHHHHHHHhcCceEECCCCEEEEccccccC----------C---------CC----Cc------c----ccchH
Confidence 4699999999999999999999999999985421 0 00 00 0 01122
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceeecC-chHHH
Q 009327 297 LLDNIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNVLY-DDEVI 350 (537)
Q Consensus 297 ~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i~~-~dd~i 350 (537)
.+.+-+..++..+++.||++.+.++.+.+ ...++++||+++|+||.+.. .+|++
T Consensus 115 ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 115 KITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence 33444555666699999999999998877 45679999999999999964 45543
No 26
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.88 E-value=1.2e-21 Score=187.13 Aligned_cols=160 Identities=15% Similarity=0.202 Sum_probs=134.8
Q ss_pred EEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-
Q 009327 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (537)
Q Consensus 141 VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~- 219 (537)
|.+|+++|+|.+.. .+.+.+.|++|.+++ +++|+|+||||||.+..++.|.+.|+.+ ++||+++++
T Consensus 1 v~vi~i~g~I~~~~---------~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~---~~pvva~V~g 67 (178)
T cd07021 1 VYVIPIEGEIDPGL---------AAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNS---PIPTIAYVND 67 (178)
T ss_pred CEEEEEeeEECHHH---------HHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhC---CCCEEEEECC
Confidence 57999999999763 357888899999887 9999999999999999999999999864 799999996
Q ss_pred CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 220 ~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
.|+|+|++|+++||+|+|.|++.+|++|+..... . + .+.+.+.
T Consensus 68 ~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~------------------------------~---~----~~~~K~~ 110 (178)
T cd07021 68 RAASAGALIALAADEIYMAPGATIGAAEPIPGDG------------------------------N---G----AADEKVQ 110 (178)
T ss_pred chHHHHHHHHHhCCeEEECCCCeEecCeeEcCCC------------------------------c---c----chhHHHH
Confidence 7999999999999999999999999998865221 0 0 1123455
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccC--------------cccHHHHHHcCCceeec-CchHHH
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDG--------------VYKVERLKEEGFITNVL-YDDEVI 350 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~--------------v~ta~eAle~GLVD~i~-~~dd~i 350 (537)
+.+..++..+++.||++.+.++.+++.. .++++||++.|++|.+. +.+|++
T Consensus 111 ~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 111 SYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 6677788889999999999999999865 57999999999999995 355554
No 27
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.86 E-value=6.4e-21 Score=179.47 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=134.5
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~A 221 (537)
+|.+.|+|.+. +.+++++.|..+..+++++.|+|+||||||++..+..|++.|+.+ ++||++++ +.|
T Consensus 2 ~i~i~g~I~~~---------~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~---~~~v~~~~~g~a 69 (162)
T cd07013 2 EIMLTGEVEDI---------SANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFI---KADVVTIIDGLA 69 (162)
T ss_pred EEEEccEECcH---------HHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhc---CCCceEEEEeeh
Confidence 58899999865 457999999999999999999999999999999999999999976 56788877 489
Q ss_pred chhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|+||||+++|| +.++.|++.++.+.... ..+ . +..+.+..++.++
T Consensus 70 aS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~----------------------------~~~--g--~~~d~~~~~~~l~ 117 (162)
T cd07013 70 ASMGSVIAMAGAKGKRFILPNAMMMIHQPWG----------------------------GTL--G--DATDMRIYADLLL 117 (162)
T ss_pred hhHHHHHHHcCCCCcEEEecCEEEEEccCcc----------------------------ccc--C--CHHHHHHHHHHHH
Confidence 999999999999 58888898887653211 001 1 3556778889999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceee
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNV 343 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i 343 (537)
.+++.|.+.+++.||++.++++++++...| +++||+++||||+|
T Consensus 118 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 118 KVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 999999999999999999999998887776 99999999999985
No 28
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.85 E-value=5.3e-20 Score=172.46 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=134.7
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
.|.+.|+|..+. +.+.+++.+.|+.+.++ +.|+|.||||||++.++..|.+.|+.+ +|||++++. .|
T Consensus 2 ~i~~~g~I~~~~------~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~---~~pvi~~v~g~a 69 (160)
T cd07016 2 EIYIYGDIGSDW------GVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRH---KGKVTVKIDGLA 69 (160)
T ss_pred EEEEEeEeCCCc------ccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEcchH
Confidence 588999998852 13568999999999877 789999999999999999999998865 799999996 79
Q ss_pred chhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (537)
Q Consensus 222 aSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~ 301 (537)
+|+|++|+++||+++|.|++.++.+.+... .....++.+..++.++++
T Consensus 70 ~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~--------------------------------~~g~~~~~~~~~~~l~~~ 117 (160)
T cd07016 70 ASAASVIAMAGDEVEMPPNAMLMIHNPSTG--------------------------------AAGNADDLRKAADLLDKI 117 (160)
T ss_pred HhHHHHHHhcCCeEEECCCcEEEEECCccc--------------------------------cCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999987754221 011245677788999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHccC-cccHHHHHHcCCceee
Q 009327 302 YGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNV 343 (537)
Q Consensus 302 y~~F~~~Va~~Rg~~~~~v~~~~~g~-v~ta~eAle~GLVD~i 343 (537)
++.|.+.+++.+|++.+++++++.+. .++++||++.||||++
T Consensus 118 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 118 DESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 99999999999999999999999876 5699999999999985
No 29
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.76 E-value=6.8e-18 Score=160.89 Aligned_cols=116 Identities=34% Similarity=0.495 Sum_probs=99.2
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhc-CCCCEEEEECc
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVIASMSD 470 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~-~~kPVIA~v~G 470 (537)
+|.++|+|++...+.....+....++|.++|+++.+|++||+|||+++|+||++.....+.+.++.++ .+|||||+|+|
T Consensus 1 ~i~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G 80 (177)
T cd07014 1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred CEEEEEEEeCCCCcCcCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 47889999876554433344567899999999999999999999999999999888788888887775 39999999999
Q ss_pred hhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHH
Q 009327 471 VAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507 (537)
Q Consensus 471 ~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~ 507 (537)
.|+||||+||++||+|+|+|++.||.+|+........
T Consensus 81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~ 117 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQ 117 (177)
T ss_pred chhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHH
Confidence 9999999999999999999999999999987654443
No 30
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.75 E-value=1.9e-17 Score=157.26 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=132.2
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cC
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PV 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~ 220 (537)
-+|.+.|+|.+.. ..+++..|..+..++..+.|+|.||||||++.++..|.+.|+.+ ++||++++ +.
T Consensus 10 r~i~i~g~I~~~~---------~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~---~~~v~t~~~g~ 77 (171)
T cd07017 10 RIIFLGGPIDDEV---------ANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI---KPPVSTICLGL 77 (171)
T ss_pred cEEEEcCEEcHHH---------HHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEEeE
Confidence 3789999998753 46899999999999889999999999999999999999999865 68898888 48
Q ss_pred cchhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|++|+++|| +++|.|++.++.+...... .-+.++.....+.+
T Consensus 78 aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~--------------------------------~g~~~~~~~~~~~l 125 (171)
T cd07017 78 AASMGALLLAAGTKGKRYALPNSRIMIHQPLGGA--------------------------------GGQASDIEIQAKEI 125 (171)
T ss_pred ehhHHHHHHHcCCCCCEEEccchHHHHcCCCccC--------------------------------CCCHHHHHHHHHHH
Confidence 9999999999999 8999999998877542200 01133445555667
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceee
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNV 343 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i 343 (537)
+.+.+.+.+.+++.+|++.++++++++ +..++++||+++||||+|
T Consensus 126 ~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 126 LRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 888899999999999999999999885 555699999999999985
No 31
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.75 E-value=8.4e-18 Score=161.82 Aligned_cols=99 Identities=26% Similarity=0.295 Sum_probs=89.3
Q ss_pred EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEEC
Q 009327 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (537)
Q Consensus 390 VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~ 469 (537)
|++|+++|.|.. .....+.++|+++.+| ++++|+|++|||||++.++..+++.|..+ +|||||+|+
T Consensus 1 ~~vv~i~g~I~~-----------~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~--~kPvia~v~ 66 (187)
T cd07020 1 VYVLEINGAITP-----------ATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILAS--PVPVVVYVY 66 (187)
T ss_pred CEEEEEeeEECh-----------HHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEe
Confidence 589999999975 2457799999999865 48999999999999999999999999876 999999998
Q ss_pred ---chhhHHHHHHHHhcCeEEEcCCceeeeeecccC
Q 009327 470 ---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502 (537)
Q Consensus 470 ---G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~ 502 (537)
|.|+|||++|+++||+|+|+|+|+||++++...
T Consensus 67 ~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~ 102 (187)
T cd07020 67 PSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAI 102 (187)
T ss_pred cCCCCchhHHHHHHHhCCceeECCCCcEEecccccc
Confidence 999999999999999999999999999887643
No 32
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.72 E-value=6.4e-17 Score=154.55 Aligned_cols=102 Identities=26% Similarity=0.318 Sum_probs=93.7
Q ss_pred EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEEC
Q 009327 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (537)
Q Consensus 390 VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~ 469 (537)
|.+|+++|+|.+ ...+.+.+.|+++.+++ +++|+|++|||||.+.++..|++.|+.+ ++|||++|+
T Consensus 1 v~vi~i~g~I~~-----------~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~--~~pvva~V~ 66 (178)
T cd07021 1 VYVIPIEGEIDP-----------GLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNS--PIPTIAYVN 66 (178)
T ss_pred CEEEEEeeEECH-----------HHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 578999999976 34567899999999886 8999999999999999999999999977 899999999
Q ss_pred chhhHHHHHHHHhcCeEEEcCCceeeeeecccCccc
Q 009327 470 DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFN 505 (537)
Q Consensus 470 G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~ 505 (537)
|.|+|||++|+++||+|+|+|+|.+|++|+++..++
T Consensus 67 g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~ 102 (178)
T cd07021 67 DRAASAGALIALAADEIYMAPGATIGAAEPIPGDGN 102 (178)
T ss_pred CchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCc
Confidence 999999999999999999999999999999987654
No 33
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.70 E-value=3.7e-16 Score=152.83 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=132.3
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-C
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~ 220 (537)
.+|.+.|+|.+.. ..++++.|..+..++..+.|+|.||||||++.....|++.|+.+ +.||++++. .
T Consensus 36 r~I~l~g~I~~~~---------~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~---~~~v~t~~~G~ 103 (207)
T PRK12553 36 RIIFLGGQVDDAS---------ANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFI---RPDVQTVCTGQ 103 (207)
T ss_pred eEEEEcceECHHH---------HHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhc---CCCcEEEEEee
Confidence 3588999998763 47899999999887778999999999999999999999999976 458888885 7
Q ss_pred cchhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|.+|+++|| +++|.|++.++.+....... . .-+..+.+.....+
T Consensus 104 aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~---------------------------~---~G~a~d~~~~~~~l 153 (207)
T PRK12553 104 AASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG---------------------------I---RGQASDLEIQAREI 153 (207)
T ss_pred hhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC---------------------------C---ccCHHHHHHHHHHH
Confidence 9999999999999 58999999999886532000 0 00223333444567
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceeecC
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i~~ 345 (537)
+.+.+.|.+.+++.+|++.+.+++..+ +..|+++||+++||||++..
T Consensus 154 ~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~ 201 (207)
T PRK12553 154 LRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIIT 201 (207)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcC
Confidence 788888999999999999999998875 56679999999999999973
No 34
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.69 E-value=1.3e-16 Score=149.28 Aligned_cols=101 Identities=34% Similarity=0.447 Sum_probs=94.1
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
||+++|+|.+ .+.+++.+.|+++.+|+++++|+|++|||||++..+..++++++.+ +|||||+++|.
T Consensus 1 vi~i~g~I~~-----------~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~--~kpvva~~~g~ 67 (161)
T cd00394 1 VIFINGVIED-----------VSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS--RKPVIAYVGGQ 67 (161)
T ss_pred CEEEEeEEcc-----------chHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHh--CCCEEEEECCh
Confidence 5899999986 5678999999999999999999999999999999999999999988 79999999999
Q ss_pred hhHHHHHHHHhcCeEEEcCCceeeeeecccCccc
Q 009327 472 AASGGYYMAMAAGTILAENLTLTGSIGVVTGKFN 505 (537)
Q Consensus 472 AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~ 505 (537)
|+|+||+|+++||.|++.|++.||.+|+.....+
T Consensus 68 ~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~ 101 (161)
T cd00394 68 AASAGYYIATAANKIVMAPGTRVGSHGPIGGYGG 101 (161)
T ss_pred hHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCC
Confidence 9999999999999999999999999999876654
No 35
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.68 E-value=7.1e-17 Score=160.07 Aligned_cols=125 Identities=19% Similarity=0.256 Sum_probs=109.4
Q ss_pred CCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-----------
Q 009327 385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD----------- 449 (537)
Q Consensus 385 ~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~----------- 449 (537)
+.++.|++|+||+|-.+ |+.+..+..+|.+++..+.+|+.+.++||+. +|.|.|.....
T Consensus 42 ~~d~~I~lItlNRP~~~------Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~ 115 (290)
T KOG1680|consen 42 GEDNGIALITLNRPKAL------NALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGI 115 (290)
T ss_pred ecCCCeEEEEeCChHHh------ccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccccc
Confidence 45689999999999987 8999999999999999999999999999974 46777765432
Q ss_pred --HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 450 --LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 450 --~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
..|+.+..+ +|||||+++|+|.|||+.|+++||++||+++|+|| .+|++|.+++.++|.+.+|.++
T Consensus 116 ~~~~~~~~~~~--~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~ 187 (290)
T KOG1680|consen 116 FLRVWDLVSRL--KKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSR 187 (290)
T ss_pred ccchhhhhhhc--ccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHH
Confidence 334455544 89999999999999999999999999999999999 7999999999999999998653
No 36
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.1e-16 Score=162.28 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=132.6
Q ss_pred cccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeE
Q 009327 135 RVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFI 214 (537)
Q Consensus 135 ~~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpV 214 (537)
...++.|.+++++|+|.+.. .+.+.+.|+.|+++ +-.+|||.+|+|||-+..+.+|.++|. +++.||
T Consensus 22 ~~~~~~v~vi~i~g~I~~~s---------~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~---~s~vPV 88 (436)
T COG1030 22 ATAEKKVYVIEIDGAIDPAS---------ADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAIL---NSPVPV 88 (436)
T ss_pred cccCCeEEEEEecCccCHHH---------HHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHH---cCCCCE
Confidence 34678999999999999874 57889999998865 678999999999999999888888887 679999
Q ss_pred EEEec----CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHH
Q 009327 215 IGYVP----VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEEN 290 (537)
Q Consensus 215 va~v~----~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~ 290 (537)
+.|+. +|+|+|.||+++||.++|.|.|.+|+.-..... ++ +.++
T Consensus 89 ~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~-------------------------g~-------~~~~ 136 (436)
T COG1030 89 IGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGG-------------------------GT-------SAKE 136 (436)
T ss_pred EEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCC-------------------------CC-------Cccc
Confidence 99882 599999999999999999999999987543311 01 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceeec
Q 009327 291 CEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNVL 344 (537)
Q Consensus 291 ~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i~ 344 (537)
.. ..+.+..++...|+.||++.+..+++++ ...++++||++.|+||-+.
T Consensus 137 ~~-----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA 186 (436)
T COG1030 137 AN-----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIA 186 (436)
T ss_pred hh-----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCcccccc
Confidence 11 4556678889999999999999999987 5569999999999999997
No 37
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.67 E-value=2.4e-15 Score=145.89 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=128.4
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-C
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~ 220 (537)
.+|.+.|+|.+.. ...+++.|..+...+..+.|.|.||||||++.+...|++.|+.+ +.||++++. .
T Consensus 24 r~I~i~g~I~~~~---------~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~---~~~V~t~v~G~ 91 (197)
T PRK14512 24 RSIVIAGEINKDL---------SELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFV---KPKVFTIGVGL 91 (197)
T ss_pred cEEEECCEEcHHH---------HHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhC---CCCEEEEEEee
Confidence 4678899998763 46889999888774567899999999999999999999999965 568999985 7
Q ss_pred cchhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|.+|+++||+ .++.|++.+..+...... .. +..+.+.-.+.+
T Consensus 92 AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~-------------------------------~G-~a~di~~~a~~l 139 (197)
T PRK14512 92 VASAAALIFLAAKKESRFSLPNARYLLHQPLSGF-------------------------------KG-VATDIEIYANEL 139 (197)
T ss_pred eHhHHHHHHhcCCcCceeECCCCcEEEEcCcccc-------------------------------cc-CHHHHHHHHHHH
Confidence 99999999999996 789999999887543210 00 112222222345
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC-chHHH
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY-DDEVI 350 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~-~dd~i 350 (537)
+.+.+.+.+.+++.+|++.+.+++..+...| +++||+++||||++.. .+++.
T Consensus 140 ~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 140 NKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 6666777777888999999999998886664 9999999999999974 34443
No 38
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=99.64 E-value=7.1e-15 Score=142.07 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=124.8
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cC
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PV 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~ 220 (537)
.+|.+.|+|.+.. ..+++.+|..+..++..+.|+|.||||||.+.....|++.|+.. +.||.+++ +.
T Consensus 27 riI~l~g~I~~~~---------~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~---~~~v~t~~~G~ 94 (191)
T TIGR00493 27 RIIFLSGEVNDSV---------ANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFI---KPDVSTICIGQ 94 (191)
T ss_pred eEEEEccEEChHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEEEe
Confidence 5788999998763 36888999888887777889999999999999999999999876 35676666 58
Q ss_pred cchhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|.+|+++++ +++|.|++.++.+...... .| +..+.+.-.+.+
T Consensus 95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~------------------~G--------------~a~d~~~~a~~l 142 (191)
T TIGR00493 95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA------------------QG--------------QASDIEIQANEI 142 (191)
T ss_pred eccHHHHHHhcCCCCcEEecCCceEEEecCcccc------------------cC--------------CcchhHHHHHHH
Confidence 9999999999877 5899999999998653210 00 111122223456
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeec
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVL 344 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~ 344 (537)
+.+.+.+.+.+++..|++.+.+++..+... ++++||+++||||++.
T Consensus 143 ~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii 189 (191)
T TIGR00493 143 LRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVL 189 (191)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEe
Confidence 666677777788899999999999887655 5999999999999986
No 39
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.64 E-value=1.4e-15 Score=144.27 Aligned_cols=99 Identities=28% Similarity=0.348 Sum_probs=89.5
Q ss_pred EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEEC
Q 009327 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (537)
Q Consensus 390 VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~ 469 (537)
|.+|+++|+|.+ .+.+.+.+.|+++.+| ++++|+|++|||||.+.++..|++.|+.. ++||+++|.
T Consensus 1 v~vi~i~G~I~~-----------~~~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~~~I~~~i~~~--~~pvv~~v~ 66 (172)
T cd07015 1 VYVAQIKGQITS-----------YTYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQQS--KIPVIIYVY 66 (172)
T ss_pred CEEEEEeeEECH-----------hHHHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHHHHHHHHHHhc--CcCEEEEEe
Confidence 578999999976 3456788899988765 68999999999999999999999999876 899999999
Q ss_pred ---chhhHHHHHHHHhcCeEEEcCCceeeeeecccC
Q 009327 470 ---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502 (537)
Q Consensus 470 ---G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~ 502 (537)
|.|+|+|++|+++||.|+|.|+|.+|++|++.+
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~ 102 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILG 102 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEcccccc
Confidence 999999999999999999999999999998754
No 40
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.63 E-value=8.3e-15 Score=142.58 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=129.5
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-C
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~ 220 (537)
.+|.+.|+|.+.. .+.++..|..+..++..+.|.|.||||||.+.....|++.|+.+ +.||++++. .
T Consensus 32 rii~i~g~I~~~~---------~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~---~~~v~t~~~G~ 99 (200)
T PRK00277 32 RIIFLGGEVEDHM---------ANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI---KPDVSTICIGQ 99 (200)
T ss_pred cEEEECCEECHHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhc---CCCEEEEEEeE
Confidence 4678899997653 46889999988887777889999999999999999999999865 467888875 7
Q ss_pred cchhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|.+|+++++ +++|.|++.++.+...... .. +..+.+..-+.+
T Consensus 100 aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~-------------------------------~G-~a~di~~~a~~l 147 (200)
T PRK00277 100 AASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF-------------------------------QG-QATDIEIHAREI 147 (200)
T ss_pred eccHHHHHHhcCCCCCEEEcCCceEEeccCcccc-------------------------------cC-ChhHHHHHHHHH
Confidence 9999999999876 6999999999988543200 00 233444455677
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecC
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLY 345 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~ 345 (537)
+.+.+.+.+.+++.+|++.+.+++..+... ++++||+++||||+|..
T Consensus 148 ~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~ 195 (200)
T PRK00277 148 LKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLT 195 (200)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEee
Confidence 788888889999999999999999877544 69999999999999963
No 41
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.62 E-value=2.7e-15 Score=151.09 Aligned_cols=122 Identities=16% Similarity=0.321 Sum_probs=103.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------~ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+. +|.|+++... .
T Consensus 9 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK09674 9 QQRVLLLTLNRPEAR------NALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRP 82 (255)
T ss_pred ECCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHH
Confidence 578999999999865 7888999999999999999999999999964 4778876431 1
Q ss_pred HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+++.+..+ +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 83 ~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~ 151 (255)
T PRK09674 83 QLWQRLQAF--NKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKS 151 (255)
T ss_pred HHHHHHHhC--CCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHH
Confidence 122333333 99999999999999999999999999999999999 699999988888899999864
No 42
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.61 E-value=2e-15 Score=152.12 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=103.8
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHHH---------HHH--
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALASD---------LMW-- 452 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s~---------~i~-- 452 (537)
+.|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+ .+|.|+++.... ...
T Consensus 13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 86 (257)
T COG1024 13 DGIAVITLNRPEKL------NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQP 86 (257)
T ss_pred CCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhH
Confidence 44999999999876 888999999999999999999999999996 457888865411 111
Q ss_pred --HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 453 --REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 453 --~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
..+..+.. +|||||+|+|+|+|||+.|+++||++||+++++|| .+|++|+.+....|.+.+|...
T Consensus 87 ~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~ 158 (257)
T COG1024 87 GQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGR 158 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHH
Confidence 12233322 99999999999999999999999999999999999 6999997788888888888764
No 43
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.61 E-value=1.7e-14 Score=141.79 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=125.6
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|++.. .++++.+|.-+...+.-+-|.|.||||||++.+...|++.++.. +.||++++. .|
T Consensus 56 iifl~~~Idd~~---------a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~---~~~V~tv~~G~A 123 (221)
T PRK14514 56 IIFLGTQIDDYT---------ANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFI---SSDVATICTGMA 123 (221)
T ss_pred EEEECCEEcHHH---------HHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhc---CCCEEEEEEEEe
Confidence 578899998863 46888888776654444889999999999999999999999976 567888874 89
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|.+|+++||+ .+|.|++.+..+....... . +..+.+...+.++
T Consensus 124 AS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~------------------------------G--~a~di~i~a~el~ 171 (221)
T PRK14514 124 ASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ------------------------------G--QASDIEITAREIQ 171 (221)
T ss_pred hhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC------------------------------C--CcchHHHHHHHHH
Confidence 9999999999996 8899999999986532100 0 1122233344566
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
.+.+...+.+++..|.+.+++++..+...| +++||+++||||+|..
T Consensus 172 ~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 172 KLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEee
Confidence 677777788899999999999998886665 9999999999999963
No 44
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=99.61 E-value=2.4e-14 Score=139.12 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=129.7
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.|.|+|++.. .++++.+|.....++..+-|.|.||||||++.+.-.|++.|+.. +.||++++. .|
T Consensus 32 iifl~~~i~~~~---------a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~---~~~V~Tv~~G~A 99 (200)
T CHL00028 32 LLFLGQEVDDEI---------ANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFV---KPDVHTICLGLA 99 (200)
T ss_pred EEEECCeecHHH---------HHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc---CCCEEEEEEEeh
Confidence 578899998874 46899999888765566999999999999999999999999966 568888874 89
Q ss_pred chhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|.+|++++| +++|.|++.+..+...... . . -+..+.+...+.++
T Consensus 100 aS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~-----------------------------~-~-G~a~di~~~a~~l~ 148 (200)
T CHL00028 100 ASMASFILAGGEITKRLAFPHARVMIHQPASSF-----------------------------Y-E-GQASEFVLEAEELL 148 (200)
T ss_pred HHHHHHHHhCCCCCCEEecCCCeEEEecCccCc-----------------------------C-C-CCHHHHHHHHHHHH
Confidence 999999999999 6899999999998643210 0 0 12333444456677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~ 345 (537)
.+-+.+.+.+++..|.+.+++++..+... ++++||+++||||+|..
T Consensus 149 ~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~ 195 (200)
T CHL00028 149 KLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAV 195 (200)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEee
Confidence 77788888899999999999999888665 59999999999999974
No 45
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.60 E-value=5.5e-15 Score=148.96 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=102.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH----------HHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS----------DLMW 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s----------~~i~ 452 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... ..+.
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (257)
T PRK05862 11 RGRVGLITLNRPKAL------NALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYI 84 (257)
T ss_pred eCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHH
Confidence 468999999999755 7888899999999999999999999999974 4677775431 1112
Q ss_pred HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 153 (257)
T PRK05862 85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKA 153 (257)
T ss_pred HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHH
Confidence 22222322 99999999999999999999999999999999999 699999988888899999964
No 46
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.60 E-value=4.1e-15 Score=149.93 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=101.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+. +|.|+++...
T Consensus 9 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (256)
T TIGR03210 9 RNGIAWIMINRPAKM------NAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLP 82 (256)
T ss_pred eCCEEEEEEcCCccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHH
Confidence 478999999999765 8888899999999999999999999999964 4678876431
Q ss_pred -HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 449 -DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 449 -~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
..+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+++..+....|.+.+|..+
T Consensus 83 ~~~~~~~l~~~--~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~ 154 (256)
T TIGR03210 83 MEELHSAIRDV--PKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKK 154 (256)
T ss_pred HHHHHHHHHhC--CCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHH
Confidence 0122233333 99999999999999999999999999999999999 6998866666777888888653
No 47
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.60 E-value=5.3e-15 Score=150.61 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=103.0
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------ 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------ 449 (537)
.+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++....
T Consensus 14 ~~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 87 (275)
T PLN02664 14 PNSSVFHLNLNRPSQR------NALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRG 87 (275)
T ss_pred CCCCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccch
Confidence 3588999999999865 8888899999999999999999999999974 47788764311
Q ss_pred ----HH-------HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHh
Q 009327 450 ----LM-------WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKI 513 (537)
Q Consensus 450 ----~i-------~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~ 513 (537)
.+ .+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+.+..+....|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v 167 (275)
T PLN02664 88 RSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIV 167 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHh
Confidence 00 111222222 99999999999999999999999999999999999 699999888888888888
Q ss_pred CCc
Q 009327 514 GFN 516 (537)
Q Consensus 514 G~~ 516 (537)
|..
T Consensus 168 G~~ 170 (275)
T PLN02664 168 GYG 170 (275)
T ss_pred CHH
Confidence 865
No 48
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.60 E-value=7.2e-15 Score=148.40 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=103.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------~ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++..|+++|+|||+. +|.|+++... .
T Consensus 11 ~~~va~Itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06190 11 HDRVRTLTLNRPEAR------NALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALP 84 (258)
T ss_pred eCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHH
Confidence 578999999998755 7888899999999999999999999999964 4778876431 1
Q ss_pred HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~i~~~--~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 153 (258)
T PRK06190 85 NPSPAWPAM--RKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIG 153 (258)
T ss_pred HHHHHHHhC--CCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 122333333 99999999999999999999999999999999998 699999988888888888864
No 49
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.60 E-value=4.1e-15 Score=151.49 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+. +|.|+++... ..
T Consensus 15 ~~~va~itlnrp~~~------Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (275)
T PRK09120 15 EDGIAWVTLNRPEKR------NAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQER 88 (275)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHH
Confidence 478999999999866 7888899999999999999999999999974 4677775421 00
Q ss_pred H----HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 451 M----WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 451 i----~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
+ .+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..+
T Consensus 89 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 89 IRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 1 111222222 99999999999999999999999999999999999 6999999888888888888663
No 50
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.60 E-value=6.4e-15 Score=148.90 Aligned_cols=124 Identities=24% Similarity=0.330 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------HH----HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------DL----MW 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------~~----i~ 452 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++... +. +.
T Consensus 15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (261)
T PRK08138 15 ADGVALLRLNRPEAR------NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTE 88 (261)
T ss_pred cCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHH
Confidence 578999999999865 7888899999999999999999999999964 4778876431 11 11
Q ss_pred HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 157 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKF 157 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHH
Confidence 22222222 99999999999999999999999999999999999 699999998888899999876
No 51
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.60 E-value=4.4e-15 Score=150.87 Aligned_cols=125 Identities=21% Similarity=0.148 Sum_probs=103.0
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------ 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------ 449 (537)
.+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++....
T Consensus 12 ~~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 85 (272)
T PRK06142 12 LADHVAQVTLNRPGKG------NAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLA 85 (272)
T ss_pred ecCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccc
Confidence 3578999999999765 7888899999999999999999999999974 46788764310
Q ss_pred -----------HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHh
Q 009327 450 -----------LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKI 513 (537)
Q Consensus 450 -----------~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~ 513 (537)
.+.+.+..+. .+|||||+|+|.|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 165 (272)
T PRK06142 86 RPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRII 165 (272)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHh
Confidence 0111122222 299999999999999999999999999999999999 699999988888888888
Q ss_pred CCc
Q 009327 514 GFN 516 (537)
Q Consensus 514 G~~ 516 (537)
|..
T Consensus 166 G~~ 168 (272)
T PRK06142 166 GDG 168 (272)
T ss_pred CHH
Confidence 865
No 52
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.60 E-value=8.7e-15 Score=144.62 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=104.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------~ 450 (537)
+++|++|++|+|- . |+.+..+..+|.++++++.+|+++|+|||+. .|.|+++.... .
T Consensus 15 ~~~i~~itlnrp~-~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (222)
T PRK05869 15 DAGLATLLLSRPP-T------NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARV 87 (222)
T ss_pred cCCEEEEEECCCC-C------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHH
Confidence 5799999999984 2 7888899999999999999999999999974 46787754310 1
Q ss_pred HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce--Eeeccc
Q 009327 451 MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK--EIISRG 523 (537)
Q Consensus 451 i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~--~~i~~g 523 (537)
+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+++|... +.+-+|
T Consensus 88 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg 167 (222)
T PRK05869 88 RQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSG 167 (222)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 1122222322 99999999999999999999999999999999999 6999998888888999999753 334444
Q ss_pred C
Q 009327 524 K 524 (537)
Q Consensus 524 ~ 524 (537)
+
T Consensus 168 ~ 168 (222)
T PRK05869 168 R 168 (222)
T ss_pred C
Confidence 3
No 53
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.60 E-value=4.1e-15 Score=150.16 Aligned_cols=122 Identities=24% Similarity=0.295 Sum_probs=101.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++...
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (259)
T TIGR01929 10 TDGIAKITINRPQVR------NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHR 83 (259)
T ss_pred CCCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHH
Confidence 478999999999765 7888899999999999999999999999964 4667775321
Q ss_pred ---HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ---DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ---~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+++.+..+ +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~ 156 (259)
T TIGR01929 84 LNVLDVQRQIRTC--PKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQK 156 (259)
T ss_pred HHHHHHHHHHHhC--CCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHH
Confidence 0112223333 99999999999999999999999999999999999 699999888888888888864
No 54
>PLN02600 enoyl-CoA hydratase
Probab=99.60 E-value=5.7e-15 Score=148.48 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=102.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH--------HHHH-
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS--------DLMW- 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s--------~~i~- 452 (537)
.++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... ..+.
T Consensus 2 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 75 (251)
T PLN02600 2 DSGIVELRLDRPEAK------NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVN 75 (251)
T ss_pred CCcEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHH
Confidence 368999999999865 7888999999999999999999999999963 4677776431 1111
Q ss_pred ---HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 ---REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ---~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+++|..
T Consensus 76 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~ 147 (251)
T PLN02600 76 SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRS 147 (251)
T ss_pred HHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHH
Confidence 12222222 99999999999999999999999999999999999 699999888888888888865
No 55
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.60 E-value=2.6e-14 Score=138.43 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=127.4
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~A 221 (537)
+|.+.|+|++.. ..+++.+|.-+..+...+-|.|.||||||++.+...|++.|+.+ +.||++++ +.|
T Consensus 27 iifl~~~i~~~~---------a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~---~~~V~t~~~G~A 94 (196)
T PRK12551 27 IIFLGEPVTSDS---------ANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHV---KPDVHTVCVGLA 94 (196)
T ss_pred EEEECCeecHHH---------HHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc---CCCEEEEEEEEe
Confidence 577888888763 46899999888766656899999999999999999999999976 45788777 489
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|.+|++++|+ .+|.|++.+..+...... .. +..+.+...+.++
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~------------------------------~G--~a~di~~~a~~l~ 142 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA------------------------------RG--QASDIRIQADEIL 142 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEecCCccc------------------------------CC--CcchHHHHHHHHH
Confidence 9999999999996 789999999998653210 01 1122233345677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
.+.+.+.+..++..|++.+++++..+...| +++||+++||||+|..
T Consensus 143 ~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~ 189 (196)
T PRK12551 143 FLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVID 189 (196)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEec
Confidence 777778888888999999999999887665 9999999999999974
No 56
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=8.6e-15 Score=146.90 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=100.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----H----HHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----D----LMWR 453 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----~----~i~~ 453 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... . .+.+
T Consensus 7 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06072 7 REGYAIVTMSRPDKL------NALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYP 80 (248)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHH
Confidence 478999999999765 7888899999999999999999999999964 4778886431 1 1122
Q ss_pred HHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 454 EIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 454 ~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|.
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~ 147 (248)
T PRK06072 81 IIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ 147 (248)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH
Confidence 2222322 89999999999999999999999999999999998 69999887776667777773
No 57
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=6.1e-15 Score=149.35 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=101.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCcc-chHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSG-IIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~-~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+. .+.++|.++++++..|+++|+|||+. +|.|+++...
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (266)
T PRK09245 10 DGHIVTLTMNRPETR------NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPAD 83 (266)
T ss_pred ECCEEEEEECCcccc------cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchh
Confidence 478999999999865 77774 78899999999999999999999964 4778775321
Q ss_pred --HH----HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --DL----MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --~~----i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.. +.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 162 (266)
T PRK09245 84 IRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMA 162 (266)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHH
Confidence 00 1112222322 99999999999999999999999999999999999 699999988888888888875
No 58
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=99.59 E-value=7e-15 Score=140.66 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=126.6
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|.+.. ...+++.|..+..++..+-|.|.||||||++...-.|.+.|+.. +.||++++. .|
T Consensus 18 ~i~l~g~I~~~~---------~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~---~~~v~t~~~G~a 85 (182)
T PF00574_consen 18 IIFLNGPIDEES---------ANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSS---KAPVTTVVLGLA 85 (182)
T ss_dssp EEEEESSBSHHH---------HHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHS---SSEEEEEEEEEE
T ss_pred EEEECCccCHHH---------HHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhc---CCCeEEEEeCcc
Confidence 578889997763 46788888777555566889999999999999999999999965 789988885 79
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|+|.+|+++|++ .+|.|++.++.+.+..... -+..+.+...+.++
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~--------------------------------g~~~~l~~~~~~l~ 133 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSG--------------------------------GNASELREQAKELE 133 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEE--------------------------------EEHHHHHHHHHHHH
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecc--------------------------------cccchhHHHHHHHH
Confidence 9999999999999 5999999999986643211 03344445556677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
...+.+.+.+++..|++.+.+++..+...| +++||+++||||+|..
T Consensus 134 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 134 KLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 777888889999999999999998887765 9999999999999974
No 59
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=7.4e-15 Score=147.88 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=101.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH--------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD--------L---- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~--------~---- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++.... .
T Consensus 6 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06563 6 RGHVLLIGLDRPAKR------NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEG 79 (255)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhh
Confidence 478999999999865 7888899999999999999999999999974 46787764210 0
Q ss_pred HHHHHH-HhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIR-LLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~-~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+. .+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 80 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 151 (255)
T PRK06563 80 GIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWG 151 (255)
T ss_pred hhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHH
Confidence 111111 1222 99999999999999999999999999999999999 699999888888888888863
No 60
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.59 E-value=4.7e-14 Score=135.59 Aligned_cols=161 Identities=18% Similarity=0.138 Sum_probs=133.7
Q ss_pred EEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCcc
Q 009327 144 MKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVCG 222 (537)
Q Consensus 144 I~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~Aa 222 (537)
|.+.|+|.+.. ...++.+|..++.++..|-|.|.||||||++.+.-.|++.++.. ++||.+++ +.|+
T Consensus 30 I~l~g~I~~~~---------a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i---k~~V~ti~~G~Aa 97 (200)
T COG0740 30 IFLGGEIEDHM---------ANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI---KPPVSTICMGQAA 97 (200)
T ss_pred EEEeeeechHH---------HHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhc---CCCeEEEEecHHH
Confidence 99999998873 35788888888877778999999999999999999999999976 67888877 5899
Q ss_pred hhhhHHhhccCee--EecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHH
Q 009327 223 EKEYYLACACEEL--YAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN 300 (537)
Q Consensus 223 SgGY~IAsaaD~I--~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~ 300 (537)
|.|-.|++++++- |+.|++.+..+...+... . ...+.+...+.++.
T Consensus 98 Smgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~-------------------------------G-~a~Di~i~A~ei~~ 145 (200)
T COG0740 98 SMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQ-------------------------------G-QASDIEIHAREILK 145 (200)
T ss_pred hHHHHHHhcCCCCCceeCCCceEEEecCCccCc-------------------------------c-CHHHHHHHHHHHHH
Confidence 9999999999987 999999999986643111 0 22355566667778
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecCchH
Q 009327 301 IYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 301 ~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~~dd 348 (537)
+.....+.+++..|.+.+++++..+-..| +++||++.||||++....+
T Consensus 146 ~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 146 IKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 88888888999999999999988876655 9999999999999986543
No 61
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=5.8e-15 Score=151.89 Aligned_cols=124 Identities=23% Similarity=0.204 Sum_probs=101.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
++.|++|++|+|-.. |+.+..+..+|.++|+++..|+++|+|||+. +|.|+++....
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (296)
T PRK08260 11 ADGIATITLNRPDKL------NAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVE 84 (296)
T ss_pred eCCEEEEEeCCCccc------CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccc
Confidence 478999999998765 7888899999999999999999999999974 46777754310
Q ss_pred ------------HHH----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHH
Q 009327 450 ------------LMW----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGK 508 (537)
Q Consensus 450 ------------~i~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~ 508 (537)
.+. +.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~ 164 (296)
T PRK08260 85 ADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWF 164 (296)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhh
Confidence 111 11222222 99999999999999999999999999999999999 6999998888888
Q ss_pred HHHHhCCc
Q 009327 509 LYEKIGFN 516 (537)
Q Consensus 509 L~~k~G~~ 516 (537)
|.+.+|..
T Consensus 165 l~r~vG~~ 172 (296)
T PRK08260 165 LPRLVGLQ 172 (296)
T ss_pred HHHhhCHH
Confidence 88888864
No 62
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=7.9e-15 Score=146.78 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=101.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHH---H----HHHHHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALA---S----DLMWREI 455 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~---s----~~i~~~i 455 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++.+| ++|+|||+ .+|.|+++.. . ..+.+.+
T Consensus 7 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (243)
T PRK07854 7 DGQVLTIELQRPERR------NALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEML 79 (243)
T ss_pred eCCEEEEEeCCCccc------cCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchhHHHHHHHHHHHH
Confidence 478999999999876 888889999999999999865 89999997 4577887642 1 1122222
Q ss_pred HHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 456 RLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 456 ~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 80 ~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~ 145 (243)
T PRK07854 80 HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGG 145 (243)
T ss_pred HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHH
Confidence 22322 99999999999999999999999999999999999 699999988888899999865
No 63
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=7.3e-15 Score=148.36 Aligned_cols=123 Identities=24% Similarity=0.219 Sum_probs=102.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH--------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD--------L---- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~--------~---- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++.... .
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (262)
T PRK07509 10 EDGIADVRLNRPDKM------NALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKR 83 (262)
T ss_pred eCCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhh
Confidence 578999999999865 7888999999999999999999999999974 57787754210 0
Q ss_pred ----------HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 ----------MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 ----------i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~--~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 161 (262)
T PRK07509 84 LPGNANLAQRVSLGWRRL--PVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKD 161 (262)
T ss_pred hHHHHHHHHHHHHHHHhC--CCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHH
Confidence 11112223 99999999999999999999999999999999999 699999988888888888876
Q ss_pred e
Q 009327 517 K 517 (537)
Q Consensus 517 ~ 517 (537)
.
T Consensus 162 ~ 162 (262)
T PRK07509 162 V 162 (262)
T ss_pred H
Confidence 3
No 64
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=9.5e-15 Score=147.37 Aligned_cols=123 Identities=19% Similarity=0.135 Sum_probs=101.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------~ 449 (537)
+++|++|++|+|- . |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++... .
T Consensus 10 ~~~v~~itlnrp~-~------Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (258)
T PRK09076 10 DGHVAILTLNNPP-A------NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMAR 82 (258)
T ss_pred ECCEEEEEECCCC-c------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHH
Confidence 4789999999993 2 7788899999999999999999999999975 3667776421 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 83 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~ 154 (258)
T PRK09076 83 RFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEG 154 (258)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHH
Confidence 11122333322 99999999999999999999999999999999999 699999988888888999875
No 65
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=9.7e-15 Score=147.22 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=99.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH--------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS--------D---- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s--------~---- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... .
T Consensus 14 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 87 (256)
T PRK06143 14 DRGVATLTIRNAGSL------NILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFIS 87 (256)
T ss_pred CCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHH
Confidence 578999999999765 7888899999999999999999999999964 4678776431 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+ +..+....|.+.+|..
T Consensus 88 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~ 158 (256)
T PRK06143 88 RLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWA 158 (256)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHH
Confidence 11122222222 99999999999999999999999999999999999 6997 6666667788888865
No 66
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=7e-15 Score=148.41 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=102.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------~ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... .
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK05980 10 RDGIALLTLNRPEKL------NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALR 83 (260)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHH
Confidence 578999999999765 7888899999999999999999999999974 4667775421 0
Q ss_pred HHH----HHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMW----REIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~----~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+. +.+..+. -+|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 159 (260)
T PRK05980 84 DFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRK 159 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHH
Confidence 111 1122222 299999999999999999999999999999999999 699999988888888888864
No 67
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.59 E-value=1.1e-14 Score=146.71 Aligned_cols=123 Identities=20% Similarity=0.184 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----------DLM 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----------~~i 451 (537)
+++|++|++|+|-.. |+.+..+..+|.++|+++.+|+ +|+|||+. +|.|+++... ..+
T Consensus 6 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 6 EAGVARLTLNRPDKL------NSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 478999999998755 7888899999999999999998 99999964 4677775421 011
Q ss_pred ----HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 ----WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ----~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.++.+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~ 152 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRA 152 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHH
Confidence 111222322 99999999999999999999999999999999999 699999888888888888875
No 68
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=9.5e-15 Score=147.46 Aligned_cols=125 Identities=19% Similarity=0.163 Sum_probs=102.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++...
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (260)
T PRK07511 10 EGSTLVLTLSNPGAR------NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAAS 83 (260)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHH
Confidence 578999999999765 7888899999999999999999999999974 4678775421
Q ss_pred -HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 449 -DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 449 -~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
..+.+.+..+.. +|||||+|+|.|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..+
T Consensus 84 ~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (260)
T PRK07511 84 IDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQL 158 (260)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHH
Confidence 011122222222 99999999999999999999999999999999999 6999998888888888888643
No 69
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=1.2e-14 Score=148.18 Aligned_cols=122 Identities=21% Similarity=0.213 Sum_probs=100.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++...
T Consensus 24 ~~~v~~itlnrp~~~------Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 97 (277)
T PRK08258 24 DDGVATITLNRPERK------NPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA 97 (277)
T ss_pred ECCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence 578999999998754 7888889999999999999999999999974 4778776431
Q ss_pred -----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeeccc-CcccHHHHHHHhCCc
Q 009327 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVT-GKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~-~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+ +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++| ..+....|.+.+|..
T Consensus 98 ~~~~~~~~~~~l~~~--~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~ 173 (277)
T PRK08258 98 FTRMTGDLVKAMRAC--PQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQG 173 (277)
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHH
Confidence 0122223333 99999999999999999999999999999999999 699985 566677888888864
No 70
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.58 E-value=1.1e-14 Score=146.15 Aligned_cols=122 Identities=22% Similarity=0.288 Sum_probs=102.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
.++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++... ..
T Consensus 12 ~~~v~~i~ln~p~~~------Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (249)
T PRK07110 12 EEGIAQVTMQDRVNK------NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEAN 85 (249)
T ss_pred eCCEEEEEecCCCcc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHH
Confidence 478999999998765 7888899999999999999999999999974 4678875431 12
Q ss_pred HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
++..+..+ +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 86 ~~~~l~~~--~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 153 (249)
T PRK07110 86 LYSLALNC--PIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLA 153 (249)
T ss_pred HHHHHHcC--CCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHH
Confidence 23333333 99999999999999999999999999999999998 799999888888888888855
No 71
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.58 E-value=8.9e-15 Score=147.66 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=101.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
++.|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++...
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (260)
T PRK05809 11 EGHIAVVTINRPKAL------NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGL 84 (260)
T ss_pred eCCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHH
Confidence 478999999999765 7888899999999999999999999999964 3667775321
Q ss_pred --HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+++.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~~~~l~~~--~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 156 (260)
T PRK05809 85 LGNKVFRKLENL--DKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPG 156 (260)
T ss_pred HHHHHHHHHHcC--CCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 1122223333 99999999999999999999999999999999999 699999888888888888864
No 72
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=1.1e-14 Score=147.27 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=99.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS---------D---- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s---------~---- 449 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... +
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (262)
T PRK05995 11 RGQVATVTLNRPDVR------NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRAD 84 (262)
T ss_pred eCCEEEEEEcCcccc------cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhH
Confidence 578999999999765 7888899999999999999999999999974 4778776421 0
Q ss_pred --HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+. ..|.+++|..
T Consensus 85 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~-~~l~~~vg~~ 157 (262)
T PRK05995 85 ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATIS-PYVIRAMGER 157 (262)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchH-HHHHHHhCHH
Confidence 11222333322 99999999999999999999999999999999999 6999987654 4577888854
No 73
>PLN02888 enoyl-CoA hydratase
Probab=99.58 E-value=1.4e-14 Score=146.93 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=102.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------~ 450 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++.... .
T Consensus 17 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T PLN02888 17 RNGIATITINRPKAL------NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETD 90 (265)
T ss_pred cCCEEEEEEcCCCcc------cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHH
Confidence 578999999998755 7888899999999999999999999999973 47788864321 1
Q ss_pred HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+...+..+ +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|+++..+....|.+.+|..
T Consensus 91 ~~~~i~~~--~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 158 (265)
T PLN02888 91 PVAQMERC--RKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGAN 158 (265)
T ss_pred HHHHHHhC--CCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHH
Confidence 12223333 99999999999999999999999999999999998 699999888888888888875
No 74
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=1e-14 Score=147.35 Aligned_cols=125 Identities=19% Similarity=0.299 Sum_probs=102.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH--------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS--------D---- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s--------~---- 449 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++... .
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (260)
T PRK07657 11 TPHVVKITLNRPRAA------NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVS 84 (260)
T ss_pred cCCEEEEEEeCCccc------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHH
Confidence 478999999999765 7888899999999999999999999999964 4667775321 0
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|...
T Consensus 85 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 85 LIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 11222222222 99999999999999999999999999999999999 6999999888888988888653
No 75
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=9.7e-15 Score=147.09 Aligned_cols=123 Identities=24% Similarity=0.293 Sum_probs=101.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------~ 449 (537)
++.|++|++|+|- . |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... .
T Consensus 9 ~~~v~~itl~rp~-~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (257)
T PRK07658 9 EDHVAVITLNHPP-A------NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ 81 (257)
T ss_pred eCCEEEEEECCCC-C------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence 5789999999983 2 7788899999999999999999999999974 4778875421 0
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
...+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..++...|.+.+|..
T Consensus 82 ~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 153 (257)
T PRK07658 82 LGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKA 153 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHH
Confidence 11112222322 99999999999999999999999999999999998 699999988888899999875
No 76
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=7.7e-15 Score=148.41 Aligned_cols=124 Identities=22% Similarity=0.216 Sum_probs=102.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH------H---H--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------D---L-- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------~---~-- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... + .
T Consensus 15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (262)
T PRK06144 15 RGGIARITFNRPAAR------NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYE 88 (262)
T ss_pred eCCEEEEEecCCccc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHH
Confidence 478999999999865 7888899999999999999999999999974 3667775321 0 1
Q ss_pred --HHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----e-eecccCcccHHHHHHHhCCc
Q 009327 451 --MWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----S-IGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 --i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----s-IGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+. -+|||||+|+|+|.|||+.|+++||++||++++.|| . +|+++..+....|.+++|..
T Consensus 89 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~ 162 (262)
T PRK06144 89 RRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA 162 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence 112222222 299999999999999999999999999999999999 3 99999988888899999865
No 77
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.58 E-value=1.2e-14 Score=146.91 Aligned_cols=121 Identities=24% Similarity=0.225 Sum_probs=100.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------H-----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS-------D----- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s-------~----- 449 (537)
+++|++|++|+| .. |+.+..+.++|.++++++..|++||+|||+. +|.|+++... .
T Consensus 10 ~~~v~~itlnrp-~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (261)
T PRK03580 10 NGSILEITLDRP-KA------NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPG 82 (261)
T ss_pred ECCEEEEEECCc-cc------cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhh
Confidence 478999999999 33 7788889999999999999999999999963 4778876431 0
Q ss_pred --HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...+..+ +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 83 ~~~~~~~l~~~--~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~ 153 (261)
T PRK03580 83 GFAGLTEIFDL--DKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPA 153 (261)
T ss_pred hhHHHHHHHhC--CCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHH
Confidence 112223333 99999999999999999999999999999999999 699999888888888888864
No 78
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=8.7e-15 Score=146.93 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=101.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... ..
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK05870 10 DDGVALITVNDPDRR------NAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRR 83 (249)
T ss_pred cCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHH
Confidence 478999999998765 7888899999999999999999999999974 4678775431 11
Q ss_pred HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~ 154 (249)
T PRK05870 84 IYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQ 154 (249)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHH
Confidence 1222222322 99999999999999999999999999999999998 699999887777788888864
No 79
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=1e-14 Score=147.53 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=99.2
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH--------------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-------------- 449 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-------------- 449 (537)
++|++|++|+|-.. |+.+..+.++|.++++++.+|+++++|||+. +|.|+++....
T Consensus 13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (262)
T PRK07468 13 RGVATLTLNRPEKH------NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEA 86 (262)
T ss_pred CcEEEEEEcCcccc------cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHH
Confidence 58999999999765 7888899999999999999999999999974 47788764210
Q ss_pred -HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 450 -LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 450 -~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+... +++++|..+
T Consensus 87 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~~~~vG~~~ 159 (262)
T PRK07468 87 RRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY-VVARMGEAN 159 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhh-HHhhccHHH
Confidence 01112222322 99999999999999999999999999999999999 699998876655 667777653
No 80
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=1.1e-14 Score=148.33 Aligned_cols=124 Identities=23% Similarity=0.180 Sum_probs=99.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++...
T Consensus 17 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 90 (276)
T PRK05864 17 RPEIALITLNRPERM------NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTY 90 (276)
T ss_pred cCCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhH
Confidence 478999999999755 7888889999999999999999999999974 4778876421
Q ss_pred -----HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeeccc-CcccHHHHHHHhCCc
Q 009327 449 -----DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVT-GKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -----~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~-~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+++ ..+....|.+.+|..
T Consensus 91 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~ 169 (276)
T PRK05864 91 ALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSS 169 (276)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHH
Confidence 001122222222 99999999999999999999999999999999998 699986 555556677788864
No 81
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=1.4e-14 Score=146.32 Aligned_cols=123 Identities=22% Similarity=0.202 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++. |+++|+|||+. +|.|+++... ..
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (262)
T PRK08140 11 EAGVATLTLNRPDKL------NSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGES 83 (262)
T ss_pred ECCEEEEEecCCccc------CCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHH
Confidence 478999999998765 7888899999999999999 99999999964 4777775421 01
Q ss_pred HH----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MW----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+. +.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 158 (262)
T PRK08140 84 IETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMA 158 (262)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence 11 11222322 99999999999999999999999999999999998 699999888888888888864
No 82
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.58 E-value=1.2e-14 Score=145.98 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=104.7
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----------HHHH
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----------DLMW 452 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----------~~i~ 452 (537)
++|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++... ..+.
T Consensus 14 ~~v~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 87 (251)
T PRK06023 14 PGVQVIRFNRPEKK------NAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEIL 87 (251)
T ss_pred CcEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHH
Confidence 46999999999765 7888999999999999999999999999964 4778776421 1122
Q ss_pred HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce--EeecccC
Q 009327 453 REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK--EIISRGK 524 (537)
Q Consensus 453 ~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~--~~i~~g~ 524 (537)
+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..+ +.+-+|+
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~ 166 (251)
T PRK06023 88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGE 166 (251)
T ss_pred HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCC
Confidence 22333322 99999999999999999999999999999999999 6999998887777878788653 3344453
No 83
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.57 E-value=1.6e-14 Score=145.37 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=103.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-----HH-HHHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-----LM-WREIR 456 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-----~i-~~~i~ 456 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+. +|.|+++.... .. .+.+.
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (254)
T PRK08252 10 RGRVLIITINRPEAR------NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFG 83 (254)
T ss_pred ECCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHH
Confidence 478999999999865 7888899999999999999999999999963 47788764311 01 11111
Q ss_pred H---hcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 457 L---LSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 457 ~---~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
. ..-+|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..+
T Consensus 84 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 151 (254)
T PRK08252 84 GLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHI 151 (254)
T ss_pred HHHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHH
Confidence 1 12389999999999999999999999999999999999 6999999988888989998753
No 84
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.57 E-value=1.1e-14 Score=147.90 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=101.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH----------HHH-
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS----------DLM- 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s----------~~i- 451 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++... ...
T Consensus 19 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 92 (268)
T PRK07327 19 PPGVLEIVLNGPGAL------NAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVW 92 (268)
T ss_pred CCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHH
Confidence 468999999999755 7888899999999999999999999999964 4777776421 011
Q ss_pred ---HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 ---WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ---~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 93 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 165 (268)
T PRK07327 93 REARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMA 165 (268)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHH
Confidence 122222222 99999999999999999999999999999999998 699999888888888888864
No 85
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.57 E-value=1.5e-14 Score=146.29 Aligned_cols=123 Identities=21% Similarity=0.336 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe------CCCCCchHHH-----------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI------DSPGGDALAS-----------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i------~SpGG~~~~s-----------~ 449 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++.+|+ +|+|||+. +|.|+++... .
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (261)
T PRK11423 11 INKIATITFNNPAKR------NALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDD 83 (261)
T ss_pred ECCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHH
Confidence 578999999999765 7888899999999999999887 99999974 3677776431 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|+++..++...+.+++|..
T Consensus 84 ~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 84 PLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred HHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 11222222322 99999999999999999999999999999999998 699998888888888888853
No 86
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.57 E-value=1.8e-14 Score=144.86 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=97.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----HH----HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----DL----MWR 453 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----~~----i~~ 453 (537)
++.|++|++|+|- . |+.+..+.++|.+.+.++.+|+++|+|||+. +|.|+++... .. +.+
T Consensus 8 ~~~v~~itlnrp~-~------Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 80 (251)
T TIGR03189 8 DGKLLRLRLARPK-A------NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHK 80 (251)
T ss_pred eCCEEEEEeCCCC-c------CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHH
Confidence 4689999999993 3 7888899999999999999999999999974 3678876431 11 112
Q ss_pred HHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 454 EIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 454 ~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+++.. ....|.+++|..
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~ 147 (251)
T TIGR03189 81 LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRV 147 (251)
T ss_pred HHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHH
Confidence 2222322 99999999999999999999999999999999999 69998764 456677888864
No 87
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.57 E-value=2.3e-14 Score=144.50 Aligned_cols=122 Identities=19% Similarity=0.171 Sum_probs=100.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++. +++|+|||+. +|.|+++... ..
T Consensus 9 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 80 (255)
T PRK08150 9 DGGVATIGLNRPAKR------NALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRR 80 (255)
T ss_pred eCCEEEEEEcCCccc------cCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHH
Confidence 467999999999755 7888899999999999986 7899999974 4678876431 11
Q ss_pred HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|||+|.|||+.|+++||++||++++.|| .+|+++..+....|.+.+|..
T Consensus 81 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~ 151 (255)
T PRK08150 81 WHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVA 151 (255)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence 1222333322 99999999999999999999999999999999999 699999998888899999864
No 88
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.57 E-value=1.9e-14 Score=145.79 Aligned_cols=124 Identities=16% Similarity=0.137 Sum_probs=100.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCC-CCeEEEEe----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR-YKAAIIRI----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~-vraVVL~i----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++ +|+|||+. +|.|+++...
T Consensus 11 ~~~i~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (266)
T PRK05981 11 DGGVAILTLDHPEVM------NAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDA 84 (266)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchh
Confidence 478999999998765 78888999999999999998764 99999974 4677775431
Q ss_pred -HH----HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 -DL----MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -~~----i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.. +.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~ 162 (266)
T PRK05981 85 GAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKA 162 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHH
Confidence 11 1122222322 99999999999999999999999999999999998 699999988888888888864
No 89
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.57 E-value=1.9e-14 Score=145.48 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=102.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------H------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------L------ 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------~------ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++.... .
T Consensus 12 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07799 12 RGHTLIVTMNRPEAR------NALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSY 85 (263)
T ss_pred ECCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhh
Confidence 478999999999765 7888999999999999999999999999974 47788764310 0
Q ss_pred -H--HHHHHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 451 -M--WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 451 -i--~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
. ...+..+ .-+|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..+
T Consensus 86 ~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 86 DPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 0 0111112 2299999999999999999999999999999999999 6999998888888888888643
No 90
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.56 E-value=2e-14 Score=145.14 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=102.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH---------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD---------LMW 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~---------~i~ 452 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. .|.|+++.... ..+
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (259)
T PRK06494 11 KGHVTIVTLNRPEVM------NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGF 84 (259)
T ss_pred ECCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHH
Confidence 478999999999865 7888889999999999999999999999964 36677764311 011
Q ss_pred HHHHH-hcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REIRL-LSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i~~-~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.. +.-+|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 153 (259)
T PRK06494 85 GGLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLK 153 (259)
T ss_pred HHHHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHH
Confidence 11211 12399999999999999999999999999999999999 699999988888888988864
No 91
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.56 E-value=1.8e-14 Score=146.32 Aligned_cols=125 Identities=17% Similarity=0.174 Sum_probs=102.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH----------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS----------DLM 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s----------~~i 451 (537)
+++|++|++|+|-.+ |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... ..+
T Consensus 18 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 91 (269)
T PRK06127 18 TGGLGRITFNNPARH------NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAY 91 (269)
T ss_pred ECCEEEEEecCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHH
Confidence 478999999999765 8889999999999999999999999999975 3567775421 011
Q ss_pred H----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 452 W----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 452 ~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
. +.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..+
T Consensus 92 ~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (269)
T PRK06127 92 EQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSA 166 (269)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHH
Confidence 1 11222222 99999999999999999999999999999999999 6999998888888888888653
No 92
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.56 E-value=1.8e-14 Score=146.16 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=99.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------HHH--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS---------DLM-- 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s---------~~i-- 451 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+. +|.|+++... ..+
T Consensus 18 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 91 (266)
T PRK08139 18 RDGVATLTLNRPQAF------NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFA 91 (266)
T ss_pred eCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHH
Confidence 578999999999765 7888889999999999999999999999974 4677776421 111
Q ss_pred --HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 --WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 --~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|+++..+ ...|.+.+|..
T Consensus 92 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~ 162 (266)
T PRK08139 92 RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRK 162 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHH
Confidence 112222222 99999999999999999999999999999999999 699988654 45688888864
No 93
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.56 E-value=2.3e-14 Score=144.48 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=102.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----------DLM 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----------~~i 451 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. .|.|+++... ..+
T Consensus 12 ~~~v~~i~lnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (259)
T PRK06688 12 EDGVLTITINRPDKK------NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPV 85 (259)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHH
Confidence 468999999998654 7888889999999999999999999999974 5777775321 111
Q ss_pred HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 86 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~ 155 (259)
T PRK06688 86 NRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRA 155 (259)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHH
Confidence 222223322 99999999999999999999999999999999999 699999888888888888864
No 94
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.56 E-value=1.6e-14 Score=145.49 Aligned_cols=124 Identities=23% Similarity=0.228 Sum_probs=101.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. .|.|+++....
T Consensus 9 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK07260 9 EDDLATLTLNRPEVS------NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVK 82 (255)
T ss_pred ECCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHH
Confidence 468999999999765 7888899999999999999999999999964 46777764210
Q ss_pred ---HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 ---LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ---~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 83 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (255)
T PRK07260 83 IAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN 157 (255)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH
Confidence 11112222222 99999999999999999999999999999999999 699999888888888888854
No 95
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.56 E-value=2e-14 Score=146.24 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=101.6
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-----------H
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS-----------D 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s-----------~ 449 (537)
.++.|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++... .
T Consensus 19 ~~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 92 (273)
T PRK07396 19 SADGIAKITINRPEVR------NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVP 92 (273)
T ss_pred ecCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhh
Confidence 3578999999999765 7888899999999999999999999999964 4667775421 0
Q ss_pred --HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
...+....+. -+|||||+|+|.|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 93 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~ 166 (273)
T PRK07396 93 RLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQK 166 (273)
T ss_pred hhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHH
Confidence 0111122222 299999999999999999999999999999999999 699998888788888888865
No 96
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.56 E-value=1.5e-14 Score=146.53 Aligned_cols=122 Identities=15% Similarity=0.111 Sum_probs=98.9
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS--------------- 448 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s--------------- 448 (537)
++|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. .|.|+++...
T Consensus 14 ~~v~~itlnrp~~~------Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK05674 14 RGFATLWLSRADKN------NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDA 87 (265)
T ss_pred CCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHH
Confidence 57999999999865 8888899999999999999999999999974 4678775421
Q ss_pred HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+. ..|.+++|..
T Consensus 88 ~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~-~~l~~~vG~~ 159 (265)
T PRK05674 88 RELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVIS-PFVVKAIGER 159 (265)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhH-HHHHHHhCHH
Confidence 011222333323 99999999999999999999999999999999999 6999987654 3477888865
No 97
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.56 E-value=2.6e-14 Score=144.02 Aligned_cols=124 Identities=22% Similarity=0.194 Sum_probs=102.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-----HHH-----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-----LMW----- 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-----~i~----- 452 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++.... ...
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (254)
T PRK08259 10 NGPVTTVILNRPEVR------NAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDG 83 (254)
T ss_pred ECCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcc
Confidence 478999999999765 8888999999999999999999999999974 47788764311 111
Q ss_pred HHH-HHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REI-RLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i-~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
... ..+.-+|||||+|+|+|.|||+.|+++||++||++++.|| .+|+.+..+....|.+++|..
T Consensus 84 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~ 152 (254)
T PRK08259 84 PMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHS 152 (254)
T ss_pred hhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHH
Confidence 001 1122389999999999999999999999999999999998 689998888888888888875
No 98
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.56 E-value=2.7e-14 Score=145.05 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=101.4
Q ss_pred CC-cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------
Q 009327 387 GD-QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------ 449 (537)
Q Consensus 387 ~~-~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------ 449 (537)
++ +|++|++|+|-.. |+.+..+.++|.++|+++..|+++|+|||+. +|.|+++....
T Consensus 12 ~~~~v~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 85 (272)
T PRK06210 12 ADSGVAVITLNRPDRL------NAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTD 85 (272)
T ss_pred CCCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccccccc
Confidence 35 8999999999765 7888899999999999999999999999974 46777764310
Q ss_pred --HH--------HHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 450 --LM--------WREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 450 --~i--------~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
.+ .+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig 165 (272)
T PRK06210 86 VRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVG 165 (272)
T ss_pred chhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhC
Confidence 00 11122222 299999999999999999999999999999999999 7999998887777888888
Q ss_pred Cc
Q 009327 515 FN 516 (537)
Q Consensus 515 ~~ 516 (537)
..
T Consensus 166 ~~ 167 (272)
T PRK06210 166 HA 167 (272)
T ss_pred HH
Confidence 65
No 99
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.55 E-value=2.2e-14 Score=143.33 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=102.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s-------------- 448 (537)
+++|++|++++|-.. |+.+..+.++|.++|+++.+|+++|+||+. ..|.|+++...
T Consensus 5 ~~~v~~i~ln~p~~~------N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~ 78 (245)
T PF00378_consen 5 EDGVATITLNRPEKR------NALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRR 78 (245)
T ss_dssp ETTEEEEEEECGGGT------TEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchh
Confidence 479999999999765 788889999999999999999999988886 45778776332
Q ss_pred -HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 -DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..++..+..+ +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+++|.+
T Consensus 79 ~~~l~~~l~~~--~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~ 149 (245)
T PF00378_consen 79 FQELLSRLANF--PKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPS 149 (245)
T ss_dssp HHHHHHHHHHS--SSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHH
T ss_pred hccccccchhh--hhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecc
Confidence 1233333333 99999999999999999999999999999999999 699999999899999988874
No 100
>PLN02921 naphthoate synthase
Probab=99.54 E-value=3.7e-14 Score=147.80 Aligned_cols=122 Identities=22% Similarity=0.294 Sum_probs=101.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH-----------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD-----------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~-----------~ 450 (537)
+++|++|++|+|-.. |+++..+..+|.++++++..|+++++|||+. +|.|+++.... .
T Consensus 74 ~~~Va~ItLnrP~~~------Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (327)
T PLN02921 74 GEGIAKITINRPERR------NAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGR 147 (327)
T ss_pred CCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHH
Confidence 478999999999865 8889999999999999999999999999974 36788764210 0
Q ss_pred -----HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 -----MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 -----i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|+++..++...|.+.+|..
T Consensus 148 ~~~~~l~~~l~~~--~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~ 220 (327)
T PLN02921 148 LNVLDLQIQIRRL--PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQK 220 (327)
T ss_pred HHHHHHHHHHHhC--CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 11223333 99999999999999999999999999999999998 699998887777888888854
No 101
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.54 E-value=2.6e-14 Score=145.83 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=99.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe------CCCCCchHHH----------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI------DSPGGDALAS----------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i------~SpGG~~~~s----------~~ 450 (537)
.+.|++|++|++ .. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++... ..
T Consensus 19 ~~~Va~itlnr~-~~------Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~ 91 (278)
T PLN03214 19 PGGIAVVWLAKE-PV------NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAE 91 (278)
T ss_pred CCCEEEEEECCC-CC------CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHH
Confidence 478999999997 23 7888899999999999999999999999954 4777775421 11
Q ss_pred HH----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeec-ccCcccHHHHHHHhCCc
Q 009327 451 MW----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGV-VTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV-~~~~~~~~~L~~k~G~~ 516 (537)
++ +.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|+ ++..+....|.+.+|..
T Consensus 92 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~ 167 (278)
T PLN03214 92 FWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRK 167 (278)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHH
Confidence 11 12223323 99999999999999999999999999999999999 6999 58777777888888864
No 102
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.54 E-value=4.1e-14 Score=142.93 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=100.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------HH---
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS---------DL--- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s---------~~--- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++ +|+++|+|||+. .|.|+++... ..
T Consensus 13 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (260)
T PRK07659 13 EGRVATIMLNRPEAL------NALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMN 85 (260)
T ss_pred eCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHH
Confidence 578999999999765 788889999999999999 688999999964 4678776431 11
Q ss_pred -HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 -MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 -i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|+|.|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 86 ~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~ 157 (260)
T PRK07659 86 TISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGEN 157 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHH
Confidence 1122222222 99999999999999999999999999999999999 699999888888888889876
No 103
>PRK08321 naphthoate synthase; Validated
Probab=99.54 E-value=4.5e-14 Score=145.78 Aligned_cols=124 Identities=20% Similarity=0.197 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----------CCCCCchHHH-------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----------DSPGGDALAS------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----------~SpGG~~~~s------- 448 (537)
++.|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++...
T Consensus 32 ~~~va~itlnrP~~~------Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~ 105 (302)
T PRK08321 32 DQGTVRIAFDRPEVR------NAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQY 105 (302)
T ss_pred CCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccc
Confidence 478999999999765 7888899999999999999999999999974 4778875420
Q ss_pred ---------H--HH-----HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEc-CCceee----eeecccCcccH
Q 009327 449 ---------D--LM-----WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAE-NLTLTG----SIGVVTGKFNL 506 (537)
Q Consensus 449 ---------~--~i-----~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~-p~a~~G----sIGV~~~~~~~ 506 (537)
. .. .+..+.+.. +|||||+|+|.|.|||+.|+++||++||+ +++.|+ .+|+++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~ 185 (302)
T PRK08321 106 AEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGS 185 (302)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHH
Confidence 0 00 111122222 99999999999999999999999999999 689998 68999888777
Q ss_pred HHHHHHhCCc
Q 009327 507 GKLYEKIGFN 516 (537)
Q Consensus 507 ~~L~~k~G~~ 516 (537)
..|.+.+|..
T Consensus 186 ~~L~r~vG~~ 195 (302)
T PRK08321 186 AYLARQVGQK 195 (302)
T ss_pred HHHHHHhCHH
Confidence 7888888864
No 104
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.54 E-value=3.8e-14 Score=151.04 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=101.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------~ 450 (537)
++.|++|++|+|-.. |+.+..+..+|.++|+++..|++||+|||+. +|.||++.... .
T Consensus 44 ~g~v~~ItLNRP~~l------NALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 117 (401)
T PLN02157 44 SGCSRTAILNRPPAL------NALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIRE 117 (401)
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 478999999999876 8899999999999999999999999999974 57899875310 1
Q ss_pred H----HH---HHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 451 M----WR---EIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 451 i----~~---~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
. ++ .|..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .||++|..+....|.+.+|
T Consensus 118 ~~~~~~~l~~~i~~~--pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G 190 (401)
T PLN02157 118 FFSSLYSFIYLLGTY--LKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG 190 (401)
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh
Confidence 1 11 13333 99999999999999999999999999999999999 6999999888888877776
No 105
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.54 E-value=6.9e-15 Score=137.35 Aligned_cols=77 Identities=36% Similarity=0.569 Sum_probs=63.0
Q ss_pred cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 459 SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 459 ~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
+++|||||+++++|+|||||||++||.|+|+|.+.+|+|||....+++.++++|+|++.+.+++|+||+++++ .+|+
T Consensus 4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~-~~~~ 80 (154)
T PF01343_consen 4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFP-RDPM 80 (154)
T ss_dssp HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCT-TSS-
T ss_pred ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCc-CCCC
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999955 4444
No 106
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.53 E-value=3e-13 Score=131.29 Aligned_cols=159 Identities=12% Similarity=0.027 Sum_probs=125.6
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~A 221 (537)
+|.+.|+|.+.. .++++.+|..+..++.-+-|.|.||||||++...-.|++.|+.. +.||.+++ +.|
T Consensus 29 iifl~~~i~~~~---------a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~---~~~V~Ti~~G~A 96 (201)
T PRK14513 29 IIFVGTPIESQM---------ANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYI---KAPVSTICVGIA 96 (201)
T ss_pred EEEECCEEcHHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhc---CCCEEEEEEeee
Confidence 467788888763 46888888777766556889999999999999999999999976 45788777 489
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|.+|+++||+ ++|.|++.+..+...... .. +..+.+...+.++
T Consensus 97 aS~As~il~aG~kgkR~~~pna~iMIHqp~~~~-------------------------------~G-~a~di~~~a~el~ 144 (201)
T PRK14513 97 MSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF-------------------------------RG-NTPDLEVQAKEVL 144 (201)
T ss_pred hhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC-------------------------------CC-CHHHHHHHHHHHH
Confidence 9999999999996 899999999988653210 00 1223333334455
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
.+-+.+.+..++..|++.+++++..+...| +++||+++||||+|..
T Consensus 145 ~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~ 191 (201)
T PRK14513 145 FLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIE 191 (201)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEec
Confidence 666777777888889999999999887665 9999999999999974
No 107
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.53 E-value=7.2e-14 Score=140.92 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=94.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH----------H--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD----------L-- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~----------~-- 450 (537)
+++|++|++|+|- . |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++.... .
T Consensus 11 ~~~v~~itlnrp~-~------Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (257)
T PRK06495 11 SDHVAVVTLDNPP-V------NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHN 83 (257)
T ss_pred eCCEEEEEECCCc-c------ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHH
Confidence 4789999999984 3 7788899999999999999999999999974 46787764311 0
Q ss_pred --HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 --MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 --i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|+. +....|.+.+|..
T Consensus 84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~ 153 (257)
T PRK06495 84 RRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHS 153 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHH
Confidence 1112222322 99999999999999999999999999999999999 68886 3344566777754
No 108
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.53 E-value=6.1e-14 Score=146.14 Aligned_cols=123 Identities=20% Similarity=0.176 Sum_probs=100.5
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH--------------
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD-------------- 449 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~-------------- 449 (537)
.+++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++....
T Consensus 37 ~~A~ItLNRP~k~------NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~ 110 (360)
T TIGR03200 37 YNAWIILDNPKQY------NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYM 110 (360)
T ss_pred EEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHH
Confidence 5667999999765 7888899999999999999999999999964 46677654210
Q ss_pred -HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 450 -LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 450 -~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
...+.+..+. .+|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|...
T Consensus 111 ~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~r 184 (360)
T TIGR03200 111 RLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQ 184 (360)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHH
Confidence 1112222232 299999999999999999999999999999999999 6999999998888999988653
No 109
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.52 E-value=6.3e-14 Score=141.51 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=97.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++...
T Consensus 13 ~~~v~~i~lnrp~~~------Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07827 13 DGGVATLTLDSPHNR------NALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVAR 86 (260)
T ss_pred eCCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHH
Confidence 478999999999755 7888899999999999999999999999974 4677775321
Q ss_pred -HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 449 -DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 449 -~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
..+.+.+..+.. +|||||+|+|.|+|||+.|+++||++||++++.|| .+|++|+.+....+. ++|
T Consensus 87 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~-~l~ 157 (260)
T PRK07827 87 AREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLP-RLS 157 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHH-hhh
Confidence 111222233322 99999999999999999999999999999999999 699999887766554 344
No 110
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.52 E-value=8e-14 Score=140.03 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=95.6
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH------HH-----
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS------DL----- 450 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s------~~----- 450 (537)
.+++|++|++|+|- . |+.+..+.++|.++++++..|++||+|||+ .+|.|+++... ..
T Consensus 8 ~~~~v~~itlnrp~-~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~ 80 (249)
T PRK07938 8 PEPGIAEVTVDYPP-V------NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDAN 80 (249)
T ss_pred cCCCEEEEEECCCC-c------ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHH
Confidence 46899999999983 3 788889999999999999999999999997 44778886431 11
Q ss_pred --HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 --MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 --i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|||+|.|||+.|+++||++||++++.|+ .+|+++ ....|.+.+|..
T Consensus 81 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g---~~~~l~~~vg~~ 150 (249)
T PRK07938 81 RGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALG---AATHLQRLVPQH 150 (249)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCch---hHHHHHHhcCHH
Confidence 1112222222 99999999999999999999999999999999999 688763 344566777754
No 111
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.52 E-value=2.3e-14 Score=137.01 Aligned_cols=132 Identities=23% Similarity=0.369 Sum_probs=109.2
Q ss_pred cCCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH----------
Q 009327 384 TGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS---------- 448 (537)
Q Consensus 384 ~~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s---------- 448 (537)
.+.+..|.++.+|+|-.+ |..+..+...|.++++++..|+.+|+|+|+- +|.|.++..-
T Consensus 35 ~g~~~GItvl~mNRpa~k------Nsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~ 108 (291)
T KOG1679|consen 35 TGKDEGITILNMNRPAKK------NSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTR 108 (291)
T ss_pred cCCCCCeEEEecCChhhh------ccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHH
Confidence 456778999999999876 6777788999999999999999999999984 4555554321
Q ss_pred -----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc--e
Q 009327 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN--K 517 (537)
Q Consensus 449 -----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~--~ 517 (537)
..+...|.++ +.||||+++|.|.|||+.+|++||+++|+.++.+| .++++|+.++.++|.+.+|+. +
T Consensus 109 fV~~lR~~~~dIe~L--p~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaK 186 (291)
T KOG1679|consen 109 FVNGLRGLFNDIERL--PQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAK 186 (291)
T ss_pred HHHHHHHHHHHHHhC--CccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHH
Confidence 2233344444 99999999999999999999999999999999999 699999999999999999975 3
Q ss_pred Eeeccc
Q 009327 518 EIISRG 523 (537)
Q Consensus 518 ~~i~~g 523 (537)
|.|.++
T Consensus 187 ELIfta 192 (291)
T KOG1679|consen 187 ELIFTA 192 (291)
T ss_pred hHhhhh
Confidence 455444
No 112
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.51 E-value=5.7e-14 Score=144.70 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=88.8
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH-H------------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA-S------------ 448 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~-s------------ 448 (537)
.+++|++|++|+|-.. |+.+..+.++|.++|+++..|++||+|||+. +|.|+++.. .
T Consensus 11 ~~~~Va~ItLnrP~~~------NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~ 84 (298)
T PRK12478 11 TAGPVATITLNRPEQL------NTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGR 84 (298)
T ss_pred ccCCEEEEEecCCccc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccc
Confidence 3578999999999876 8899999999999999999999999999964 477887632 0
Q ss_pred ----HHH----------HHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----ee-eccc
Q 009327 449 ----DLM----------WREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SI-GVVT 501 (537)
Q Consensus 449 ----~~i----------~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sI-GV~~ 501 (537)
..+ ...+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+ |+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~ 157 (298)
T PRK12478 85 WDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL 157 (298)
T ss_pred cCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc
Confidence 010 01122222 299999999999999999999999999999999999 45 7664
No 113
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.51 E-value=6.8e-14 Score=148.45 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=101.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------~ 450 (537)
+++|++|++|+|-.. |+.+..+..+|.++|+++..|++|++|||+. +|.||++.... .
T Consensus 16 ~~~i~~ItLnRP~~l------NALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~ 89 (381)
T PLN02988 16 KSSVRILTLNRPKQL------NALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN 89 (381)
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence 478999999999866 8889999999999999999999999999974 57888875411 0
Q ss_pred -H------HHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 451 -M------WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 451 -i------~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
. ...|..+ +|||||+|+|+|+|||+.|+++||++||+++|.|+ .||++|..++...|.+..|.
T Consensus 90 ~f~~~~~l~~~i~~~--pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~ 163 (381)
T PLN02988 90 FFSDEYMLNYVMATY--SKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF 163 (381)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH
Confidence 1 1122333 99999999999999999999999999999999999 69999998888877776664
No 114
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.51 E-value=6.5e-14 Score=148.77 Aligned_cols=122 Identities=18% Similarity=0.075 Sum_probs=99.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------H----H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-------L----M 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-------~----i 451 (537)
.++|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++.... . +
T Consensus 18 ~~~v~~ItLnrP~~~------Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 91 (379)
T PLN02874 18 KGRVRVITLNRPRQL------NVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVV 91 (379)
T ss_pred ECCEEEEEECCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHH
Confidence 478999999999865 8888999999999999999999999999964 57788764310 0 1
Q ss_pred HH---HHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 452 WR---EIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 452 ~~---~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
.. .+..+. -+|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+..|
T Consensus 92 ~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g 162 (379)
T PLN02874 92 YRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG 162 (379)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH
Confidence 11 111222 299999999999999999999999999999999999 6999998887776666555
No 115
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.51 E-value=1.1e-13 Score=129.81 Aligned_cols=92 Identities=21% Similarity=0.323 Sum_probs=82.8
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
.|.++|+|.... +.+.+.+.+.|+.+.++ +.|+|.+|||||++.++..|++.|+.+ +|||++.++|.
T Consensus 2 ~i~~~g~I~~~~--------~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~--~~pvi~~v~g~ 68 (160)
T cd07016 2 EIYIYGDIGSDW--------GVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRH--KGKVTVKIDGL 68 (160)
T ss_pred EEEEEeEeCCCc--------ccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEcch
Confidence 588999997521 24678899999988765 889999999999999999999999988 99999999999
Q ss_pred hhHHHHHHHHhcCeEEEcCCceeee
Q 009327 472 AASGGYYMAMAAGTILAENLTLTGS 496 (537)
Q Consensus 472 AasgG~~lA~a~D~i~A~p~a~~Gs 496 (537)
|+|+|++|+++||.++|+|++.|+-
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~ 93 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMI 93 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEE
Confidence 9999999999999999999999984
No 116
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.49 E-value=2e-13 Score=139.88 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=99.8
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHh-----cCCCCeEEEEeC-----CCCCchHHHH------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE-----SKRYKAAIIRID-----SPGGDALASD------ 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----d~~vraVVL~i~-----SpGG~~~~s~------ 449 (537)
.++.|++|+++ |-.. |+.+..+.++|.++++++.+ |++||+|||+.. |.|+++....
T Consensus 23 ~~~~ia~itl~-p~~~------Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~ 95 (287)
T PRK08788 23 EERNVMWMYMR-AQPR------PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAG 95 (287)
T ss_pred ccCCEEEEEEC-CCCC------CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcccc
Confidence 45789999996 6543 78888999999999999998 899999999753 6677754310
Q ss_pred ----------HHHHHHHHh----cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHH
Q 009327 450 ----------LMWREIRLL----SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYE 511 (537)
Q Consensus 450 ----------~i~~~i~~~----~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~ 511 (537)
.+.+.+..+ ..+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~ 175 (287)
T PRK08788 96 DRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLAR 175 (287)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHH
Confidence 111122211 2399999999999999999999999999999999999 6999998888888888
Q ss_pred HhCCc
Q 009327 512 KIGFN 516 (537)
Q Consensus 512 k~G~~ 516 (537)
++|..
T Consensus 176 ~vG~~ 180 (287)
T PRK08788 176 RVGPK 180 (287)
T ss_pred HhhHH
Confidence 88864
No 117
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.48 E-value=1.9e-13 Score=137.79 Aligned_cols=121 Identities=12% Similarity=0.159 Sum_probs=96.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++. +++|+|||+. +|.|+++...
T Consensus 11 ~~~i~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK07112 11 QGDVCFLQLHRPEAQ------NTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDA 82 (255)
T ss_pred eCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhH
Confidence 478999999998765 7888889999999999987 3699999964 4778876431
Q ss_pred HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.++.+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|.. ....|.+++|..
T Consensus 83 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~ 154 (255)
T PRK07112 83 EPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPAC-VLPFLIRRIGTQ 154 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcch-hhHHHHHHhCHH
Confidence 011222333322 99999999999999999999999999999999999 69998865 345677888865
No 118
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.47 E-value=2.7e-13 Score=154.85 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-----------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-----------LM 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-----------~i 451 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++.... .+
T Consensus 14 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (715)
T PRK11730 14 EDGIAELVFDAPGSV------NKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQW 87 (715)
T ss_pred CCCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHH
Confidence 578999999998755 8888899999999999999999999999974 57788764311 11
Q ss_pred ----HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 ----WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ----~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|+|||+.||++||++||+++++|| .+|++|..+....|.+.+|..
T Consensus 88 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~ 161 (715)
T PRK11730 88 LHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGAD 161 (715)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHH
Confidence 122222222 99999999999999999999999999999999999 699999999899999998865
No 119
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.47 E-value=2.8e-13 Score=138.99 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=94.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++...
T Consensus 11 ~~~Va~ItlnrP~~~------Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 84 (288)
T PRK08290 11 AGRIARITLNRPEAR------NAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHP 84 (288)
T ss_pred eCCEEEEEecCcccc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccccc
Confidence 578999999999765 7888899999999999999999999999974 4677775321
Q ss_pred --------------------HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCc
Q 009327 449 --------------------DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGK 503 (537)
Q Consensus 449 --------------------~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~ 503 (537)
..+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|+. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~-~- 162 (288)
T PRK08290 85 TLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIP-G- 162 (288)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcC-c-
Confidence 011111122222 99999999999999999999999999999999998 68974 3
Q ss_pred ccHHHHHHHhCCc
Q 009327 504 FNLGKLYEKIGFN 516 (537)
Q Consensus 504 ~~~~~L~~k~G~~ 516 (537)
.....+.+.+|..
T Consensus 163 ~~~~~l~~~iG~~ 175 (288)
T PRK08290 163 VEYFAHPWELGPR 175 (288)
T ss_pred chHHHHHHHhhHH
Confidence 2334455667744
No 120
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.47 E-value=4.7e-14 Score=135.17 Aligned_cols=122 Identities=23% Similarity=0.318 Sum_probs=106.2
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------------------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS------------------- 448 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s------------------- 448 (537)
+.||.|+||+|.++ |++.+.+..++.+++..++.|++|-+|||..++-|+..+++
T Consensus 27 ~giakItinRPevr------NAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~ 100 (282)
T COG0447 27 DGIAKITINRPEVR------NAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGI 100 (282)
T ss_pred CceEEEEecChhhh------ccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccC
Confidence 68999999999998 89999999999999999999999999999865333222211
Q ss_pred -----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 449 -----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
-.+.+.|+.+ ||||||.|+|+|+|||-.|-+.||+-+|+.+++|| .+|.+.+.++...|.+.+|.++
T Consensus 101 ~rLnvLdlQrlIR~~--PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKk 176 (282)
T COG0447 101 PRLNVLDLQRLIRTM--PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKK 176 (282)
T ss_pred cccchhhHHHHHHhC--CcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhh
Confidence 2455667766 99999999999999999999999999999999999 6999999999999999999864
No 121
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.47 E-value=1.5e-13 Score=144.13 Aligned_cols=122 Identities=19% Similarity=0.146 Sum_probs=97.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD------------ 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~------------ 449 (537)
.++|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++....
T Consensus 10 ~~~v~~itLnrP~~~------Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (342)
T PRK05617 10 EGGVGVITLNRPKAL------NALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAAD 83 (342)
T ss_pred ECCEEEEEECCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHH
Confidence 578999999999765 8888999999999999999999999999975 35677754310
Q ss_pred HHH----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 450 LMW----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 450 ~i~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
... +....+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+..|
T Consensus 84 ~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g 157 (342)
T PRK05617 84 RFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG 157 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc
Confidence 111 11122222 99999999999999999999999999999999999 6999998877666655443
No 122
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=99.46 E-value=1.9e-12 Score=127.12 Aligned_cols=168 Identities=14% Similarity=0.057 Sum_probs=128.2
Q ss_pred EEEEeeeeccCcccccCC-CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCC---------HHHHHHHHHHHHHhhhcCC
Q 009327 143 TMKLRGQIADQLKSRFSS-GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG---------WGKVEEIRRHVVDFKKSGK 212 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~-~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~---------~~~seeI~~~I~~lr~s~K 212 (537)
+|.|.|+|.+.....+.. .-..+.++.+|.-...+..-+-|.|.||||||+ +...-.|++.++.+ +.
T Consensus 32 ii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~i---k~ 108 (222)
T PRK12552 32 IVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYI---KP 108 (222)
T ss_pred EEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhc---CC
Confidence 578899998873322221 123567888888877766678999999999987 56778899999977 34
Q ss_pred eEEEEe-cCcchhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHH
Q 009327 213 FIIGYV-PVCGEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEE 289 (537)
Q Consensus 213 pVva~v-~~AaSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e 289 (537)
+|.+++ +.|+|.|.+|++++|+ .+|.|++.+..+...... .. +..
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~-------------------------------~G-~A~ 156 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA-------------------------------RG-QAT 156 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc-------------------------------cc-CHH
Confidence 677766 5899999999999997 789999999988543210 01 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 290 NCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 290 ~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
+.+...+.++.+.+.+.+.+++..|.+.+++++..+...| +++||+++||||+|..
T Consensus 157 di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~ 213 (222)
T PRK12552 157 DIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEec
Confidence 4444445677777888888888899999999999887665 9999999999999974
No 123
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.46 E-value=6.1e-13 Score=127.66 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC----CCCCchHH--------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA--------------S 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~----SpGG~~~~--------------s 448 (537)
+++|++|+++++-.. |+.+..+.++|.++++++..|+++++|||+.+ |.|+++.. .
T Consensus 6 ~~~i~~i~l~~~~~~------N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~ 79 (195)
T cd06558 6 DGGVATITLNRPEKR------NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI 79 (195)
T ss_pred ECCEEEEEECCcccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence 368999999999744 67788899999999999999999999999864 66766532 1
Q ss_pred HHHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+. .+||||++|+|.|.|+|+.++++||+++|++++.|+ .+|.+|..+....|.+++|.+
T Consensus 80 ~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~ 152 (195)
T cd06558 80 RELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPA 152 (195)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHH
Confidence 12222222222 299999999999999999999999999999999999 699998888888888887643
No 124
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.46 E-value=3e-13 Score=139.57 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=92.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++....
T Consensus 17 ~~~V~~Itlnrp~~~------Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 90 (302)
T PRK08272 17 TGRIARITLNRPEKG------NAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYP 90 (302)
T ss_pred ECCEEEEEecCcccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccc
Confidence 478999999999865 8888899999999999999999999999974 47777764311
Q ss_pred ------------------------HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecc
Q 009327 450 ------------------------LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVV 500 (537)
Q Consensus 450 ------------------------~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~ 500 (537)
...+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~ 170 (302)
T PRK08272 91 GKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGV 170 (302)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccC
Confidence 0111122222 299999999999999999999999999999999999 34434
Q ss_pred cCcccHHHHHHHhCCc
Q 009327 501 TGKFNLGKLYEKIGFN 516 (537)
Q Consensus 501 ~~~~~~~~L~~k~G~~ 516 (537)
+. ...+...+|..
T Consensus 171 ~~---~~~~~~~vG~~ 183 (302)
T PRK08272 171 PA---TGMWAYRLGPQ 183 (302)
T ss_pred Ch---HHHHHHHhhHH
Confidence 32 23455566654
No 125
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.46 E-value=3.5e-13 Score=143.77 Aligned_cols=122 Identities=12% Similarity=0.035 Sum_probs=98.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
.+++++|++|+|-.. |+.+..+..+|.++|+++.+|+++++|||+. +|.||++....
T Consensus 49 ~~~~~~ItLNRP~~l------NALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 122 (407)
T PLN02851 49 RAKSRAAILNRPSSL------NALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKL 122 (407)
T ss_pred ECCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 578999999999876 8899999999999999999999999999975 47888864321
Q ss_pred ---HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 450 ---LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 450 ---~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
.+++....+. -+|||||+|+|+|+|||+.|+++||++||+++|.|+ .||++|..+....|.+..|
T Consensus 123 ~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g 195 (407)
T PLN02851 123 FFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPG 195 (407)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcC
Confidence 0111122221 289999999999999999999999999999999999 7999998877665555444
No 126
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.45 E-value=5.1e-13 Score=152.38 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=106.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
.+.|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++...
T Consensus 14 ~~gva~Itlnrp~~~------Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (714)
T TIGR02437 14 EDGIAELKFDAPGSV------NKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQW 87 (714)
T ss_pred cCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHH
Confidence 578999999998644 7888899999999999999999999999964 4778776421
Q ss_pred ----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce--E
Q 009327 449 ----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK--E 518 (537)
Q Consensus 449 ----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~--~ 518 (537)
..++..|..+ +|||||+|+|.|+|||+.||++||++||++++.|| .+|++|+.++...|.+.+|... +
T Consensus 88 ~~~~~~~~~~i~~~--pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 88 LLFANSIFNKLEDL--PVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 1122223333 99999999999999999999999999999999999 6999999999999999988754 3
Q ss_pred eecccC
Q 009327 519 IISRGK 524 (537)
Q Consensus 519 ~i~~g~ 524 (537)
.+-+|+
T Consensus 166 llltG~ 171 (714)
T TIGR02437 166 WIASGK 171 (714)
T ss_pred HHHcCC
Confidence 444443
No 127
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.42 E-value=8.3e-13 Score=150.50 Aligned_cols=122 Identities=20% Similarity=0.322 Sum_probs=100.9
Q ss_pred CCcEEEEEEecc-cccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE-----eCCCCCchHHH------------
Q 009327 387 GDQIAVIRASGS-ISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR-----IDSPGGDALAS------------ 448 (537)
Q Consensus 387 ~~~VavI~i~G~-I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~-----i~SpGG~~~~s------------ 448 (537)
.++|++|++|+| -.. |+.+..+.++|.++|+++.+|+++|+|||. .+|.|+++...
T Consensus 8 ~~~Va~itlnrp~~~~------Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (699)
T TIGR02440 8 EDGIAILTIDVPGEKM------NTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL 81 (699)
T ss_pred CCCEEEEEECCCCCCC------CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence 578999999999 344 788889999999999999999999999973 45778876431
Q ss_pred ----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC--ceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~--a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..++..+..+ +|||||+|||+|+|||+.||++||++||+++ +.|| .+|++|..+....|.+.+|..
T Consensus 82 ~~~~~~~~~~l~~~--~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~ 157 (699)
T TIGR02440 82 AQQGQVLFAELEAL--PIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS 157 (699)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHH
Confidence 1122223333 9999999999999999999999999999986 7898 799999999888898888864
No 128
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.41 E-value=2.2e-12 Score=128.95 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=92.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCC-eEEEE----eCCCCCchHHH----------H--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYK-AAIIR----IDSPGGDALAS----------D-- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vr-aVVL~----i~SpGG~~~~s----------~-- 449 (537)
++.|++|++|+|-. |+.+..+.++|.++++++.+|++++ +||+. .+|.|+++... .
T Consensus 7 ~~~v~~i~Lnrp~~-------Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 79 (239)
T PLN02267 7 RGNLFILTLTGDGE-------HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLM 79 (239)
T ss_pred cCCEEEEEeCCCCc-------CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHH
Confidence 57899999999842 5677888999999999999999987 55554 34778875321 0
Q ss_pred --HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEc-CCceee----eeecc-cCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAE-NLTLTG----SIGVV-TGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~-p~a~~G----sIGV~-~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.||++||++||+ +.+.|+ .+|+. |.. ....|.+++|..
T Consensus 80 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~ 154 (239)
T PLN02267 80 VAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSP 154 (239)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChH
Confidence 11122222323 99999999999999999999999999998 467888 69996 544 466778888866
No 129
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.40 E-value=2.2e-12 Score=128.01 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=93.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------HHH----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------DLM---- 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------~~i---- 451 (537)
+++|++|++|++ .. |+.+..+.++|.++++++. +++|+|||+. +|.|+++... ..+
T Consensus 10 ~~~v~~itln~~-~~------Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 80 (229)
T PRK06213 10 EDGVATITLDDG-KV------NALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAG 80 (229)
T ss_pred cCCEEEEEeCCC-CC------CCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHH
Confidence 478999999986 22 7888889999999999987 4679999964 4677765421 111
Q ss_pred HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCC-ceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENL-TLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~-a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|.|||+.|+++||++||+++ +.|+ .+|+.+..+....+.+++|..
T Consensus 81 ~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~ 151 (229)
T PRK06213 81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPS 151 (229)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHH
Confidence 222233322 9999999999999999999999999999999 9998 699876666666666777754
No 130
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.39 E-value=1.1e-12 Score=149.91 Aligned_cols=131 Identities=22% Similarity=0.315 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEE-E----eCCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAII-R----IDSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL-~----i~SpGG~~~~s------------- 448 (537)
++.|++|++|+|-.. .|+.+..+.++|.++++++..|++||+||| . .+|.|+++...
T Consensus 20 ~~gVa~itlnrP~~~-----~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 94 (737)
T TIGR02441 20 KGDVAVVKIDSPNSK-----VNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLS 94 (737)
T ss_pred ECCEEEEEEcCCCCC-----CCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHH
Confidence 578999999998621 177888999999999999999999998755 4 45777775421
Q ss_pred ---HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC--ceee----eeecccCcccHHHHHHHhCCce--
Q 009327 449 ---DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----SIGVVTGKFNLGKLYEKIGFNK-- 517 (537)
Q Consensus 449 ---~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~--a~~G----sIGV~~~~~~~~~L~~k~G~~~-- 517 (537)
..+...+..+ +|||||+|||+|+|||+.||++||+++|+++ +.|| .+|++|+.++...|.+.+|...
T Consensus 95 ~~~~~l~~~i~~~--~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~ 172 (737)
T TIGR02441 95 QEGQEMFERIEKS--QKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAAL 172 (737)
T ss_pred HHHHHHHHHHHhC--CCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHH
Confidence 1122333333 9999999999999999999999999999998 5788 6999999999999999988653
Q ss_pred EeecccC
Q 009327 518 EIISRGK 524 (537)
Q Consensus 518 ~~i~~g~ 524 (537)
+.+-+|+
T Consensus 173 ~l~ltG~ 179 (737)
T TIGR02441 173 DMMLTGK 179 (737)
T ss_pred HHHHcCC
Confidence 3444443
No 131
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.39 E-value=1.8e-12 Score=147.91 Aligned_cols=122 Identities=24% Similarity=0.328 Sum_probs=100.7
Q ss_pred CCcEEEEEEecc-cccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH---------H--
Q 009327 387 GDQIAVIRASGS-ISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS---------D-- 449 (537)
Q Consensus 387 ~~~VavI~i~G~-I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s---------~-- 449 (537)
+++|++|++|+| -.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... .
T Consensus 13 ~~~va~itlnrp~~~~------Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (708)
T PRK11154 13 EDNIAVITIDVPGEKM------NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEAL 86 (708)
T ss_pred CCCEEEEEECCCCCCC------cCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHH
Confidence 578999999998 333 7888899999999999999999999999963 4778876421 1
Q ss_pred -----HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCc--eee----eeecccCcccHHHHHHHhCCc
Q 009327 450 -----LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLT--LTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 -----~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a--~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.|..+ +|||||+|+|+|.|||+.||++||++||++++ .|| .+|++|+.++...|.+.+|..
T Consensus 87 ~~~~~~~~~~i~~~--~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~ 162 (708)
T PRK11154 87 ARQGQQLFAEIEAL--PIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS 162 (708)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHH
Confidence 122233333 99999999999999999999999999999974 898 699999999889899988864
No 132
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.38 E-value=2.1e-12 Score=121.74 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=85.1
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.|+|+|.. .+.+.+.+.|..+..++.++.|+|++|||||++.++..|++.|+.+ ++||++++.|.
T Consensus 2 ~i~i~g~I~~-----------~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~--~~~v~~~~~g~ 68 (162)
T cd07013 2 EIMLTGEVED-----------ISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFI--KADVVTIIDGL 68 (162)
T ss_pred EEEEccEECc-----------HHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhc--CCCceEEEEee
Confidence 5788999964 5678899999999999999999999999999999999999999988 88999999999
Q ss_pred hhHHHHHHHHhcC--eEEEcCCceeee
Q 009327 472 AASGGYYMAMAAG--TILAENLTLTGS 496 (537)
Q Consensus 472 AasgG~~lA~a~D--~i~A~p~a~~Gs 496 (537)
|+|+|++|+++|| .+++.|++.++-
T Consensus 69 aaS~~~~i~~a~~~g~r~~~p~a~~~i 95 (162)
T cd07013 69 AASMGSVIAMAGAKGKRFILPNAMMMI 95 (162)
T ss_pred hhhHHHHHHHcCCCCcEEEecCEEEEE
Confidence 9999999999999 699999999883
No 133
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.34 E-value=2.5e-11 Score=116.51 Aligned_cols=167 Identities=21% Similarity=0.215 Sum_probs=114.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeC----CCCCCHH--------------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE----PLSCGWG--------------KVEE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~In----SpGG~~~--------------~see 199 (537)
++.|++|.++.+-..+.- +....+++.+.++.+..|+.+++|||+.+ |.|+++. ....
T Consensus 6 ~~~i~~i~l~~~~~~N~~----~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~ 81 (195)
T cd06558 6 DGGVATITLNRPEKRNAL----SLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRE 81 (195)
T ss_pred ECCEEEEEECCccccCCC----CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHH
Confidence 457999999765321111 12356799999999999999999999987 2344432 2234
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+||||+.++ .|.++|+.++++||.++|.+++.++...+.. |+.+.
T Consensus 82 ~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~------------G~~p~----------- 138 (195)
T cd06558 82 LQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKL------------GLVPG----------- 138 (195)
T ss_pred HHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhc------------CCCCC-----------
Confidence 45555556667999999997 6889999999999999999998888765422 21110
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. .....+.+.+ | ... .+-+..|+.|++++|++.||||++...+++.+.+.+.+
T Consensus 139 --~-------g~~~~l~~~~---------------g--~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a 192 (195)
T cd06558 139 --G-------GGTQRLPRLV---------------G--PARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELA 192 (195)
T ss_pred --C-------cHHHHHHHHh---------------C--HHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHH
Confidence 0 0000011111 1 222 23355699999999999999999998888888777665
No 134
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.33 E-value=7.3e-12 Score=138.19 Aligned_cols=127 Identities=16% Similarity=0.214 Sum_probs=96.4
Q ss_pred CCcEEEEEEecccccCCCC----CCCCCccchHHHHHHHHHHHH-hcCCCCeEEEEe-----CCCCCchHHHH-------
Q 009327 387 GDQIAVIRASGSISRVRSP----LSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRI-----DSPGGDALASD------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~----~~~~~~~~~~~~l~~~l~~~~-~d~~vraVVL~i-----~SpGG~~~~s~------- 449 (537)
++.|++|++|+|-..+..+ -.|+.+..+..+|.++|+++. +|+++|+|||+. +|.|+++....
T Consensus 18 ~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~ 97 (546)
T TIGR03222 18 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWK 97 (546)
T ss_pred eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchh
Confidence 4789999999875111111 237888889999999999998 789999999973 47788764310
Q ss_pred ------------HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC--ceee----e-eecccCcccHHHHH
Q 009327 450 ------------LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----S-IGVVTGKFNLGKLY 510 (537)
Q Consensus 450 ------------~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~--a~~G----s-IGV~~~~~~~~~L~ 510 (537)
.+.+.++.+ +|||||+|+|+|+|||+.|+++||++||+++ +.|+ . +|++|..+....|.
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~--pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~ 175 (546)
T TIGR03222 98 VNFCKFTNETRNGIEDSSRHS--GLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVT 175 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHhC--CCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhcc
Confidence 011222333 9999999999999999999999999999986 6887 4 89999888777665
Q ss_pred --HHhCC
Q 009327 511 --EKIGF 515 (537)
Q Consensus 511 --~k~G~ 515 (537)
+.+|.
T Consensus 176 ~~~~vg~ 182 (546)
T TIGR03222 176 DKRRVRR 182 (546)
T ss_pred ccchhCH
Confidence 35554
No 135
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.32 E-value=6.9e-12 Score=138.72 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=97.2
Q ss_pred CCcEEEEEEeccc----ccCCCCCCCCCccchHHHHHHHHHHHH-hcCCCCeEEEEe-----CCCCCchHHHH-------
Q 009327 387 GDQIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRI-----DSPGGDALASD------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I----~~~~~~~~~~~~~~~~~~l~~~l~~~~-~d~~vraVVL~i-----~SpGG~~~~s~------- 449 (537)
.+.|++|++|+|- .+......|+.+..+..+|.++++++. +|++||+|||+. +|.|+++....
T Consensus 22 ~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~ 101 (550)
T PRK08184 22 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWK 101 (550)
T ss_pred eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchh
Confidence 4789999999764 221111237888899999999999998 789999999964 47787754310
Q ss_pred --------H----HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC--ceee----e-eecccCcccHHHHH
Q 009327 450 --------L----MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----S-IGVVTGKFNLGKLY 510 (537)
Q Consensus 450 --------~----i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~--a~~G----s-IGV~~~~~~~~~L~ 510 (537)
. +.+.+..+ +|||||+|+|+|+|||+.|+++||++|++++ +.|| . +|++|..+....|.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~--pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~ 179 (550)
T PRK08184 102 VNFCKFTNETRNGIEDSSRHS--GLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVT 179 (550)
T ss_pred hhHHHHHHHHHHHHHHHHHhC--CCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhh
Confidence 0 11222233 9999999999999999999999999999987 8888 3 89999888887776
Q ss_pred --HHhCC
Q 009327 511 --EKIGF 515 (537)
Q Consensus 511 --~k~G~ 515 (537)
+++|.
T Consensus 180 ~~~~vg~ 186 (550)
T PRK08184 180 DKRKVRR 186 (550)
T ss_pred hhhhcCH
Confidence 45664
No 136
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.32 E-value=3.5e-11 Score=121.76 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=109.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-------------ee 199 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++.+|++|++|||+-.++ |+++... ..
T Consensus 15 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (262)
T PRK06144 15 RGGIARITFNRPAARNA---M-TWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERR 90 (262)
T ss_pred eCCEEEEEecCCcccCC---C-CHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 56799998853211010 0 1123678999999999999999999998652 4443211 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+. .+|+.+.. +
T Consensus 91 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~-----------~~G~~p~~---------g 150 (262)
T PRK06144 91 IDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIAR-----------TLGNCLSM---------S 150 (262)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHH-----------hccCCCCc---------c
Confidence 33344556667999999997 688999999999999999999988764320 12222110 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. -..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 151 ~-----------~~~l~~~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 202 (262)
T PRK06144 151 N-----------LARLVAL-----------------LGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALA 202 (262)
T ss_pred H-----------HHHHHHH-----------------hCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHH
Confidence 0 0001111 1111 223467899999999999999999998777766554443
No 137
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.32 E-value=4e-11 Score=121.28 Aligned_cols=167 Identities=19% Similarity=0.176 Sum_probs=110.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------EEIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------eeI~~~ 203 (537)
++.|++|.++-+=..+. + +.-...++.+.++++.+|++|++|||+-.+. |+++... ..+.+.
T Consensus 15 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 90 (261)
T PRK08138 15 ADGVALLRLNRPEARNA---L-NMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERY 90 (261)
T ss_pred cCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHH
Confidence 56789998853211110 0 1123678999999999999999999987643 4444321 112334
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+-+. .+..+
T Consensus 91 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g~~~- 148 (261)
T PRK08138 91 WEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIK------------VGLMPG---------AGGTQ- 148 (261)
T ss_pred HHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccc------------cccCCC---------CcHHH-
Confidence 5556667999999997 688999999999999999999998875432 232210 00000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ . |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 149 ----------~l-----------~------~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 197 (261)
T PRK08138 149 ----------RL-----------V------RAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELA 197 (261)
T ss_pred ----------HH-----------H------HHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHH
Confidence 00 0 111112 234456799999999999999999998887766655443
No 138
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.31 E-value=4.4e-11 Score=118.29 Aligned_cols=168 Identities=12% Similarity=0.077 Sum_probs=113.9
Q ss_pred ccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HH
Q 009327 136 VRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EE 199 (537)
Q Consensus 136 ~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------ee 199 (537)
..++.|++|+++.+=. +. + +.-...+|.+.++++..|++|++|||+-... |+++... +.
T Consensus 13 ~~~~~i~~itlnrp~~-Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (222)
T PRK05869 13 SQDAGLATLLLSRPPT-NA---L-TRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARV 87 (222)
T ss_pred cccCCEEEEEECCCCC-CC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHH
Confidence 3468899999976521 11 1 1224678999999999999999999987642 4443321 12
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+.++...+|||||.++ .|..||.-|+++||.++|.+.+.++...+. +|+-+...
T Consensus 88 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~~g--------- 146 (222)
T PRK05869 88 RQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEIL------------AGLAPSGD--------- 146 (222)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhc------------cCCCCCcc---------
Confidence 23445566677999999997 688999999999999999999988875432 22211000
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+ .|.+.... .+-+++|+.++++||+++||||++...+++.+.+.+.+
T Consensus 147 ~~-----------~~l-----------------~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (222)
T PRK05869 147 GM-----------ARL-----------------TRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA 198 (222)
T ss_pred HH-----------HHH-----------------HHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHH
Confidence 00 000 01112222 34467899999999999999999998888777666554
No 139
>PLN02600 enoyl-CoA hydratase
Probab=99.31 E-value=4.8e-11 Score=120.09 Aligned_cols=167 Identities=15% Similarity=0.121 Sum_probs=110.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------eeI 200 (537)
.+.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-..+ |+++... ..+
T Consensus 2 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNA---I-GKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHH
Confidence 56799999954211110 0 1224578999999999999999999987532 4544321 112
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+-+. .+.
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~ 136 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETG------------LAIIPG---------AGG 136 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccc------------cCcCCC---------chH
Confidence 3334556667999999997 688999999999999999999988875332 222110 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+. |.+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 137 ~-----------~~l~-----------------~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a 187 (251)
T PLN02600 137 T-----------QRLP-----------------RLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELA 187 (251)
T ss_pred H-----------HHHH-----------------HHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHH
Confidence 0 0011 111111 234467899999999999999999998888776655543
No 140
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.31 E-value=4.3e-11 Score=120.60 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=110.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------H----HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------E----EIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------e----eI~~~ 203 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++.+|++|++|||+-... |+++... + ...+.
T Consensus 9 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK09674 9 QQRVLLLTLNRPEARNA---L-NNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQL 84 (255)
T ss_pred ECCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHH
Confidence 56799999954321110 0 1224678999999999999999999987653 4554321 1 11233
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+.+..- ..
T Consensus 85 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~~g---------~~-- 141 (255)
T PRK09674 85 WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEI------------TLGIMPGAG---------GT-- 141 (255)
T ss_pred HHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchh------------hcCCCCCcc---------HH--
Confidence 4455567999999997 68899999999999999999999887543 233322100 00
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. .+. |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 142 ---------~-----------~l~------~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a 191 (255)
T PRK09674 142 ---------Q-----------RLI------RSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLA 191 (255)
T ss_pred ---------H-----------HHH------HHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHH
Confidence 0 000 111222 234466799999999999999999998777665554443
No 141
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.31 E-value=3.1e-11 Score=122.18 Aligned_cols=167 Identities=13% Similarity=0.166 Sum_probs=110.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC------CCCCHHHH-----------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP------LSCGWGKV-----------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS------pGG~~~~s-----------eeI 200 (537)
.+.|++|+++-+=..+. + +.-.+++|.+.++++.+|+ |++|||+-++ .|+++... +.+
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 85 (261)
T PRK11423 11 INKIATITFNNPAKRNA---L-SKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPL 85 (261)
T ss_pred ECCEEEEEEcCccccCC---C-CHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHH
Confidence 57899999954311110 0 1124678999999999888 9999999752 24554321 223
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..++..+|||||.++ .|.+||+.|+++||.++|.+.+.++...+. +|+.+.. | -
T Consensus 86 ~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~~~~---g------~ 144 (261)
T PRK11423 86 RQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPAN------------LGVPYNL---S------G 144 (261)
T ss_pred HHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhh------------cCCCCCc---c------H
Confidence 4455666678999999997 688999999999999999999988875432 2322110 0 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
- ..|...|-.. ...+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 145 -----------~-----------~~l~~~vg~~-----~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 195 (261)
T PRK11423 145 -----------I-----------LNFTNDAGFH-----IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMA 195 (261)
T ss_pred -----------H-----------HHHHHHhHHH-----HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHH
Confidence 0 0111111111 1234467899999999999999999998777766655443
No 142
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.30 E-value=4.7e-11 Score=120.48 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=111.0
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-----------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-----------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-----------ee 199 (537)
++.|++|+++-+ +..+ +.-..++|.+.++++..|++|++|||+-+++ |+++... ..
T Consensus 9 ~~~v~~itlnrp------~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (256)
T TIGR03210 9 RNGIAWIMINRP------AKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLP 82 (256)
T ss_pred eCCEEEEEEcCC------ccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHH
Confidence 567999999532 1111 1224678999999999999999999998763 4554321 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||.-|+++||.++|.+++.++...+. +|+-+
T Consensus 83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~------------~G~~~------------ 138 (256)
T TIGR03210 83 MEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPK------------VGSVD------------ 138 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEeccccc------------ccccC------------
Confidence 23345556677999999997 688999999999999999999998875432 12110
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+. .. -..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 139 -~~----~~---~~~l~~~-----------------vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (256)
T TIGR03210 139 -PG----YG---TALLARV-----------------VGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWC 193 (256)
T ss_pred -Cc----cH---HHHHHHH-----------------hCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHH
Confidence 00 00 0001111 1111 234456799999999999999999998887766665544
No 143
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.30 E-value=4.6e-11 Score=120.53 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=111.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------EEIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------eeI~~~ 203 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+-... |+++... ..+.+.
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK05862 11 RGRVGLITLNRPKALNA---L-NDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITN 86 (257)
T ss_pred eCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHH
Confidence 46799999964311110 0 1224678999999999999999999997653 4443221 123333
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.++...+. +|+.+. .+..
T Consensus 87 ~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~~-- 143 (257)
T PRK05862 87 WEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIK------------LGVLPG---------MGGS-- 143 (257)
T ss_pred HHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhc------------cCcCCC---------ccHH--
Confidence 4556667999999997 688999999999999999999998875432 232210 0000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 144 ---------~~l~~~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK05862 144 ---------QRLTRA-----------------VGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAA 193 (257)
T ss_pred ---------HHHHHH-----------------hCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHH
Confidence 001111 1111 234467799999999999999999998887776665554
No 144
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.30 E-value=2.6e-11 Score=123.67 Aligned_cols=165 Identities=15% Similarity=0.208 Sum_probs=109.9
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------- 197 (537)
.+.|++|+++-+ +..+ +.-..++|.+.++++.+|++|++|||+-+.+ |+++...
T Consensus 17 ~~~v~~itlnrp------~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 90 (276)
T PRK05864 17 RPEIALITLNRP------ERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTY 90 (276)
T ss_pred cCCEEEEEecCC------ccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhH
Confidence 567999999532 1111 1123568999999999999999999988653 4443211
Q ss_pred -----HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcce-EEEE
Q 009327 198 -----EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEP-QVQR 270 (537)
Q Consensus 198 -----eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~-~~v~ 270 (537)
..+.+.+..++..+|||||.++ .|.+||+-|+++||.++|.+.+.++...+.. |+.+ ..
T Consensus 91 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~------------Gl~p~~~-- 156 (276)
T PRK05864 91 ALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINN------------GLTASEL-- 156 (276)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCccccc------------CCCCCCc--
Confidence 1123344556667999999997 6889999999999999999999888654322 2211 00
Q ss_pred eccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHH
Q 009327 271 IGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 271 ~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
+..+ .+. |-+... ..+-++.|+.++++||++.||||++...+++
T Consensus 157 -------g~~~-----------~l~-----------------~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 201 (276)
T PRK05864 157 -------GLSY-----------LLP-----------------RAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQL 201 (276)
T ss_pred -------chhe-----------ehH-----------------hhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHH
Confidence 0000 000 111112 2344678999999999999999999988877
Q ss_pred HHHHHHHh
Q 009327 350 ISMLKERL 357 (537)
Q Consensus 350 i~~l~~~~ 357 (537)
.+.+.+.+
T Consensus 202 ~~~a~~~a 209 (276)
T PRK05864 202 LDTCYAIA 209 (276)
T ss_pred HHHHHHHH
Confidence 66655544
No 145
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=5.3e-11 Score=120.35 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=112.5
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------- 197 (537)
.++.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-.+. |+++...
T Consensus 10 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK05995 10 QRGQVATVTLNRPDVRNA---F-NETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADA 85 (262)
T ss_pred eeCCEEEEEEcCcccccC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHH
Confidence 356899999964311110 0 1224678999999999999999999988763 4444221
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+.+.. |
T Consensus 86 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~~---g---- 146 (262)
T PRK05995 86 RRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVR------------LGLIPAT---I---- 146 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccc------------cccCccc---h----
Confidence 1223445556667999999998 688999999999999999999999876542 2332210 0
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.. .+... +.... .+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 147 --~~-----------------------~l~~~------vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (262)
T PRK05995 147 --SP-----------------------YVIRA------MGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDE 195 (262)
T ss_pred --HH-----------------------HHHHH------hCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHH
Confidence 00 01111 11222 234578999999999999999999987777666655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 196 ~a 197 (262)
T PRK05995 196 LL 197 (262)
T ss_pred HH
Confidence 44
No 146
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=6.4e-11 Score=119.53 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=111.5
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EE 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------ee 199 (537)
.++.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-.++ |+++... ..
T Consensus 13 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06143 13 DDRGVATLTIRNAGSLNI---L-GTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISR 88 (256)
T ss_pred cCCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHH
Confidence 467899999964311110 0 1224678999999999999999999998652 3443221 12
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+ +.. |
T Consensus 89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~G~-p~~---~------ 146 (256)
T PRK06143 89 LRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVR------------VGI-PSV---I------ 146 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccc------------cCC-CCc---c------
Confidence 23344556567999999997 688999999999999999999998875442 232 100 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 147 ~~-----------~~l~~~-----------------iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (256)
T PRK06143 147 HA-----------ALLPRL-----------------IGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLA 198 (256)
T ss_pred HH-----------HHHHHh-----------------cCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHH
Confidence 00 001111 1112 233456799999999999999999998777766655443
No 147
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=6.3e-11 Score=119.79 Aligned_cols=167 Identities=18% Similarity=0.162 Sum_probs=111.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------EEIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------eeI~~~ 203 (537)
++.|++|+++.+=..+. + +.-.++++.+.|+++..|++|++|||+.... |+++... ..+.+.
T Consensus 11 ~~~va~Itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06190 11 HDRVRTLTLNRPEARNA---L-SAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNP 86 (258)
T ss_pred eCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHH
Confidence 57899999964211110 0 1224678999999999999999999998653 4444321 123344
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+-+.. +..
T Consensus 87 ~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~~-- 143 (258)
T PRK06190 87 SPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHA------------RVGILPGW---------GLS-- 143 (258)
T ss_pred HHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECccc------------ccCcCCCc---------cHH--
Confidence 5556677999999997 68899999999999999999999886533 22322210 000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+. |.+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 144 ---------~~l~-----------------r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 193 (258)
T PRK06190 144 ---------VRLP-----------------QKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLA 193 (258)
T ss_pred ---------HHHH-----------------HHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHH
Confidence 0011 111122 234457899999999999999999998777766665544
No 148
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=5.7e-11 Score=120.01 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=111.9
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------- 197 (537)
.++.|++|+++.+=..+. + +...++++.+.|+++.+|++|++|||+-+.. |+++...
T Consensus 9 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07511 9 REGSTLVLTLSNPGARNA---L-HPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASI 84 (260)
T ss_pred eECCEEEEEECCcccccC---C-CHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHH
Confidence 367899999965321110 0 1224678999999999999999999987653 4443221
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+.+..+...+|||||.++ .|.+||..|+++||.++|.+.+.++...+. +|+.+.
T Consensus 85 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~------------~Gl~p~--------- 143 (260)
T PRK07511 85 DGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVK------------VGLTPD--------- 143 (260)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccc------------cCcCCC---------
Confidence 1223344455567999999997 688999999999999999999988875332 232211
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+..+ .+. |.+.... .+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 144 ~g~~~-----------~l~-----------------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~ 195 (260)
T PRK07511 144 GGGSW-----------FLA-----------------RALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALA 195 (260)
T ss_pred chHHH-----------HHH-----------------HHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHH
Confidence 00000 000 1112222 334668999999999999999999987777666555
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 196 ~a 197 (260)
T PRK07511 196 LA 197 (260)
T ss_pred HH
Confidence 44
No 149
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.29 E-value=6.3e-11 Score=120.24 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=110.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------HH----H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------EE----I 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------ee----I 200 (537)
++.|++|+++.+=..+. + +.-..+++.+.++++..|++|++|||+-++. |+++... .. +
T Consensus 18 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 93 (266)
T PRK08139 18 RDGVATLTLNRPQAFNA---L-SEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARC 93 (266)
T ss_pred eCCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHH
Confidence 56789998864311110 0 1224678999999999999999999988764 4444221 11 2
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||.-|+++||.++|.+++.++...+. +|+-+.. | .
T Consensus 94 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~~---~------~ 152 (266)
T PRK08139 94 SRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVN------------IGLFCST---P------M 152 (266)
T ss_pred HHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccC------------cCCCCCc---c------H
Confidence 2334556667999999997 688999999999999999999998875432 2322100 0 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+ .+. ..| ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 153 -~-----------~l~-----------r~v------G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 202 (266)
T PRK08139 153 -V-----------ALS-----------RNV------PRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLA 202 (266)
T ss_pred -H-----------HHH-----------HHh------CHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHH
Confidence 0 011 111 111 234467899999999999999999998777766655443
No 150
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=6.5e-11 Score=120.41 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=110.5
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------- 197 (537)
.++.|++|+++-+=..+. + +.-...+|.+.++++..|++|++|||+-+++ |+++...
T Consensus 12 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 87 (272)
T PRK06142 12 LADHVAQVTLNRPGKGNA---M-NPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARP 87 (272)
T ss_pred ecCCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccc
Confidence 357799999964211010 0 1224678999999999999999999998764 4444321
Q ss_pred --------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEE
Q 009327 198 --------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQV 268 (537)
Q Consensus 198 --------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~ 268 (537)
..+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~- 154 (272)
T PRK06142 88 RTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREV------------DLGMVAD- 154 (272)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhh------------hhCCCCC-
Confidence 0122334445667999999997 68899999999999999999999887543 2333221
Q ss_pred EEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc-h
Q 009327 269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD-D 347 (537)
Q Consensus 269 v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~-d 347 (537)
.+..+ .+. ..| |.. ...+-++.|+.++++||++.||||++... +
T Consensus 155 --------~g~~~-----------~l~-----------~~~----G~~-~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~ 199 (272)
T PRK06142 155 --------VGSLQ-----------RLP-----------RII----GDG-HLRELALTGRDIDAAEAEKIGLVNRVYDDAD 199 (272)
T ss_pred --------chHHH-----------HHH-----------HHh----CHH-HHHHHHHhCCCcCHHHHHHcCCccEecCCHH
Confidence 00000 000 111 110 12344678999999999999999999874 6
Q ss_pred HHHHHHHHHh
Q 009327 348 EVISMLKERL 357 (537)
Q Consensus 348 d~i~~l~~~~ 357 (537)
++.+.+.+.+
T Consensus 200 ~l~~~a~~~a 209 (272)
T PRK06142 200 ALLAAAHATA 209 (272)
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 151
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.28 E-value=7.3e-11 Score=120.30 Aligned_cols=166 Identities=15% Similarity=0.216 Sum_probs=109.1
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------- 197 (537)
..+.|++|.++-+=..+. + +.-..+++.+.++++..|++|++|||+-.++ |+++...
T Consensus 14 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 14 PNSSVFHLNLNRPSQRNA---L-SLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred CCCCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 467899999954311110 0 1224678999999999999999999988664 4444321
Q ss_pred -HHH-------HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEE
Q 009327 198 -EEI-------RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQV 268 (537)
Q Consensus 198 -eeI-------~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~ 268 (537)
+.+ .+.+..++..+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~ 157 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEV------------DLAITADL 157 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHH------------hhCCCCCc
Confidence 111 2234456667999999997 68899999999999999999999887543 23332210
Q ss_pred EEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCc-
Q 009327 269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYD- 346 (537)
Q Consensus 269 v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~- 346 (537)
+.. ..+. .. +... ..+-+++|+.|+++||++.||||++...
T Consensus 158 ---------g~~-----------~~l~-----------~~------vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 200 (275)
T PLN02664 158 ---------GTL-----------QRLP-----------SI------VGYGNAMELALTGRRFSGSEAKELGLVSRVFGSK 200 (275)
T ss_pred ---------cHH-----------HHHH-----------HH------hCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCCh
Confidence 000 0000 00 1111 2344678999999999999999999874
Q ss_pred hHHHHHHHH
Q 009327 347 DEVISMLKE 355 (537)
Q Consensus 347 dd~i~~l~~ 355 (537)
+++.+.+.+
T Consensus 201 ~~l~~~~~~ 209 (275)
T PLN02664 201 EDLDEGVRL 209 (275)
T ss_pred hHHHHHHHH
Confidence 666554443
No 152
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=6.8e-11 Score=119.42 Aligned_cols=167 Identities=13% Similarity=0.154 Sum_probs=110.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------eeI 200 (537)
.+.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+-+.+ |+++... ..+
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK05980 10 RDGIALLTLNRPEKLNA---L-NYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDF 85 (260)
T ss_pred ECCEEEEEECCcccccC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHH
Confidence 57799999853211110 0 1124578999999999999999999998763 4444211 111
Q ss_pred ----HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 201 ----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 201 ----~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+.. |+-+.
T Consensus 86 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~------------Gl~p~-------- 145 (260)
T PRK05980 86 VRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRL------------GMPPT-------- 145 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCccccc------------CCCCC--------
Confidence 1233445567999999997 6889999999999999999999988754422 22110
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+..+ .+ .|.+... ..+-++.|+.++++||++.||||++...+++.+.+.
T Consensus 146 -~g~~~-----------~l-----------------~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 196 (260)
T PRK05980 146 -FGGTQ-----------RL-----------------PRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAAR 196 (260)
T ss_pred -chHhh-----------HH-----------------HhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHH
Confidence 00000 00 0111122 234456899999999999999999998888777765
Q ss_pred HHh
Q 009327 355 ERL 357 (537)
Q Consensus 355 ~~~ 357 (537)
+.+
T Consensus 197 ~~a 199 (260)
T PRK05980 197 ALA 199 (260)
T ss_pred HHH
Confidence 554
No 153
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=8.1e-11 Score=119.59 Aligned_cols=167 Identities=13% Similarity=0.127 Sum_probs=111.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH----------HH---
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV----------EE--- 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s----------ee--- 199 (537)
.+.|++|+++-+=..+. + +.-..++|.+.++++.+|++|++|||+-+.+ |+++... ..
T Consensus 18 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 93 (269)
T PRK06127 18 TGGLGRITFNNPARHNA---M-SLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQ 93 (269)
T ss_pred ECCEEEEEecCCCccCC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHH
Confidence 46789998853211110 0 2234678999999999999999999998752 4554321 11
Q ss_pred -HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 200 -IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 200 -I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
+.+.+..++..+||||+.++ .|.+||+-|+++||.++|.+.+.++...+. +|+.+..
T Consensus 94 ~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~------------~Gl~p~~--------- 152 (269)
T PRK06127 94 AVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAAR------------LGLGYGY--------- 152 (269)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhh------------hCCCCCc---------
Confidence 22234556678999999997 688999999999999999999998875432 2222100
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+.. ..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 153 g~~-----------~~l~~~-----------------vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 204 (269)
T PRK06127 153 DGV-----------KNLVDL-----------------VGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADY 204 (269)
T ss_pred cHH-----------HHHHHH-----------------hCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHH
Confidence 000 001111 1111 23446789999999999999999999888877766555
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 205 a 205 (269)
T PRK06127 205 A 205 (269)
T ss_pred H
Confidence 4
No 154
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.27 E-value=6.9e-11 Score=119.45 Aligned_cols=168 Identities=15% Similarity=0.111 Sum_probs=110.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-------------ee 199 (537)
++.|++|+++.+=..+. + +.-..+++.+.++++..|++|++|||+-.++ |+++... ..
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (259)
T TIGR01929 10 TDGIAKITINRPQVRNA---F-RPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLN 85 (259)
T ss_pred CCCEEEEEecCCccccC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHH
Confidence 57899999964311110 0 1123578999999999999999999998763 4444211 01
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+.+...
T Consensus 86 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~G~~p~~~--------- 144 (259)
T TIGR01929 86 VLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPK------------VGSFDGGY--------- 144 (259)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccc------------cccCCCcc---------
Confidence 22334455567999999997 688999999999999999999988875332 22211000
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.-..+...+. .. ...+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 145 -----------~~~~l~~~vG-----------~~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (259)
T TIGR01929 145 -----------GSSYLARIVG-----------QK-----KAREIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWC 196 (259)
T ss_pred -----------HHHHHHHHhH-----------HH-----HHHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHH
Confidence 0001111111 11 1234466799999999999999999998877766655544
No 155
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=9.3e-11 Score=119.65 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=110.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
++.|++|.++.+=..+. + +.-...+|.+.++++..|+.|++|||+-+.. |+++...
T Consensus 24 ~~~v~~itlnrp~~~Na---l-~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 99 (277)
T PRK08258 24 DDGVATITLNRPERKNP---L-TFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFT 99 (277)
T ss_pred ECCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHH
Confidence 57899999964211010 0 1123678999999999999999999988653 4444321
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+ ++|+.+- .
T Consensus 100 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~Gl~p~--------~ 159 (277)
T PRK08258 100 RMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFT------------RVGLAGA--------D 159 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEecccc------------ccCcCCC--------C
Confidence 0112344556667999999997 68899999999999999999999886432 1222100 0
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
.+ ....+...+ |.. ...+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 160 ~g-----------~~~~l~~~v---------------G~~-~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 212 (277)
T PRK08258 160 MG-----------ACALLPRII---------------GQG-RASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQAL 212 (277)
T ss_pred ch-----------HHHHHHHHh---------------CHH-HHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHH
Confidence 00 000011111 111 123346789999999999999999999877777666655
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 213 a 213 (277)
T PRK08258 213 A 213 (277)
T ss_pred H
Confidence 4
No 156
>PLN02888 enoyl-CoA hydratase
Probab=99.27 E-value=9.9e-11 Score=118.75 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=110.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHH---------HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEE---------IRRHV 204 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~see---------I~~~I 204 (537)
.+.|++|+++.+=..+. + +.-...+|.+.++++..|++|++|||+-... |+++....+ ..+.+
T Consensus 17 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 92 (265)
T PLN02888 17 RNGIATITINRPKALNA---L-TRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPV 92 (265)
T ss_pred cCCEEEEEEcCCCcccC---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHH
Confidence 46788888853211010 0 1123578999999999999999999997653 455432211 12334
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccC
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~ 283 (537)
..+...+|||||.++ .|.+||..||++||.++|.+++.++...+ ++|+.+. .+..
T Consensus 93 ~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~~--- 148 (265)
T PLN02888 93 AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHA------------KFGIFPS---------WGLS--- 148 (265)
T ss_pred HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccc------------cccCCCC---------ccHh---
Confidence 455567999999997 68899999999999999999998876533 2333211 0000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 284 ~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 149 --------~~l~~~-----------------vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (265)
T PLN02888 149 --------QKLSRI-----------------IGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVA 198 (265)
T ss_pred --------hHHHHH-----------------hCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHH
Confidence 001111 1111 234467899999999999999999998777766665544
No 157
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=7.6e-11 Score=118.91 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=111.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH-----------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK-----------VEEIRR 202 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~-----------seeI~~ 202 (537)
++.|++|.++-+=..+ .+ +.-..+++.+.++++.+|+++++|||+-+.+ |+++.. ...+.+
T Consensus 12 ~~~v~~i~lnrp~~~N---al-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (259)
T PRK06688 12 EDGVLTITINRPDKKN---AL-TAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNR 87 (259)
T ss_pred ECCEEEEEecCccccc---CC-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHH
Confidence 5679999986321001 00 1124678999999999999999999987653 343321 122344
Q ss_pred HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcc
Q 009327 203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQL 281 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~ 281 (537)
.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+.. +..+
T Consensus 88 ~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------~G~~p~~---------g~~~ 146 (259)
T PRK06688 88 FLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAK------------LGLCPDA---------GGSA 146 (259)
T ss_pred HHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhh------------cCCCCCc---------chhh
Confidence 45556567999999997 688999999999999999999998876442 2332110 0000
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 282 TRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 282 t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+...+ ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 147 -----------~l~~~~-----------------G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 195 (259)
T PRK06688 147 -----------LLPRLI-----------------GRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQA 195 (259)
T ss_pred -----------HHHHHh-----------------hHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence 011111 111 223456799999999999999999998777776665554
No 158
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=7.7e-11 Score=121.74 Aligned_cols=164 Identities=12% Similarity=0.116 Sum_probs=110.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
.+.|++|+++.+=..+. + +.-.+.+|.+.++++..|++|++|||+-.+. |+++...
T Consensus 17 ~~~V~~Itlnrp~~~Na---l-~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 92 (302)
T PRK08272 17 TGRIARITLNRPEKGNA---I-TADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGK 92 (302)
T ss_pred ECCEEEEEecCccccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccc
Confidence 46799999964311110 0 1224678999999999999999999988764 3443221
Q ss_pred ---------------------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccch
Q 009327 198 ---------------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFL 255 (537)
Q Consensus 198 ---------------------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~ 255 (537)
..+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.+|...+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~----- 167 (302)
T PRK08272 93 RQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV----- 167 (302)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc-----
Confidence 1122334455667999999997 6889999999999999999999887654321
Q ss_pred hhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHH
Q 009327 256 GGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERL 334 (537)
Q Consensus 256 ~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eA 334 (537)
.|+ + +.. .+ ... +... ..+-++.|+.++++||
T Consensus 168 ------gg~---------------~-------~~~--~~-----------~~~------vG~~~A~~llltG~~i~a~eA 200 (302)
T PRK08272 168 ------WGV---------------P-------ATG--MW-----------AYR------LGPQRAKRLLFTGDCITGAQA 200 (302)
T ss_pred ------ccC---------------C-------hHH--HH-----------HHH------hhHHHHHHHHHcCCccCHHHH
Confidence 010 0 000 00 001 1112 2344678999999999
Q ss_pred HHcCCceeecCchHHHHHHHHHh
Q 009327 335 KEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 335 le~GLVD~i~~~dd~i~~l~~~~ 357 (537)
++.||||++...+++.+.+.+.+
T Consensus 201 ~~~GLv~~vv~~~~l~~~a~~la 223 (302)
T PRK08272 201 AEWGLAVEAVPPEELDERTERLV 223 (302)
T ss_pred HHcCCCceecCHHHHHHHHHHHH
Confidence 99999999998888776655544
No 159
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=9.8e-11 Score=118.32 Aligned_cols=167 Identities=18% Similarity=0.123 Sum_probs=111.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------eeI 200 (537)
++.|++|.++-+=..+. + +.-.+.++.+.++++..|++|++|||+-..+ |+++... ..+
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07657 11 TPHVVKITLNRPRAANA---L-SLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLI 86 (260)
T ss_pred cCCEEEEEEeCCcccCC---C-CHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHH
Confidence 57899999964311110 0 1224578999999999999999999998663 3443221 122
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.++...+. +|+-+. .+.
T Consensus 87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~------------~G~~p~---------~g~ 145 (260)
T PRK07657 87 RTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETT------------LAIIPG---------AGG 145 (260)
T ss_pred HHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhc------------cCcCCC---------ccH
Confidence 3345556667999999997 688999999999999999999988875432 232211 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+... | ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 146 ~-----------~~l~~~-----------v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (260)
T PRK07657 146 T-----------QRLPRL-----------I------GVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIA 196 (260)
T ss_pred H-----------HHHHHH-----------h------CHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHH
Confidence 0 001111 1 111 234467899999999999999999998888776665554
No 160
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.27 E-value=9.4e-11 Score=118.19 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=109.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-----------HHH--
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-----------EEI-- 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-----------eeI-- 200 (537)
++.|++|+++-+=..+. + +.-...++.+.++++..|+ +++|||+-++. |+++... ..+
T Consensus 6 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T TIGR02280 6 EAGVARLTLNRPDKLNS---F-TAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIET 80 (256)
T ss_pred ECCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHH
Confidence 57899999964211010 0 1234678999999999999 99999997763 3433211 111
Q ss_pred --HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 201 --RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 201 --~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+.+..
T Consensus 81 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~lG~~p~~--------- 139 (256)
T TIGR02280 81 FYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFA------------KIGLIPDS--------- 139 (256)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhh------------hcCCCCCc---------
Confidence 2234456677999999997 68899999999999999999998876432 23432210
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+..+ .+... +... ..+-++.|+.++++||+++||||++...+++.+.+.+.
T Consensus 140 g~~~-----------~l~~~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 191 (256)
T TIGR02280 140 GGTW-----------SLPRL-----------------VGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQAL 191 (256)
T ss_pred cHHH-----------HHHHH-----------------hCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHH
Confidence 0000 01011 1111 23345789999999999999999999888777666554
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 192 a 192 (256)
T TIGR02280 192 A 192 (256)
T ss_pred H
Confidence 4
No 161
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=9e-11 Score=118.44 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=112.0
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------E 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------e 198 (537)
.++.|++|+++.+=. +. + +.-.+.+|.+.++++.+|++|++|||+-++. |+++... +
T Consensus 10 ~~~~v~~itlnrp~~-Na---l-~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK06495 10 VSDHVAVVTLDNPPV-NA---L-SRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNR 84 (257)
T ss_pred eeCCEEEEEECCCcc-cc---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHH
Confidence 356799999977521 11 0 1224678999999999999999999998653 4444321 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+. |.
T Consensus 85 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~------~~---- 142 (257)
T PRK06495 85 RTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEI------------DVGLA------GG---- 142 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhh------------ccCcc------cc----
Confidence 122334556677999999997 68899999999999999999999887644 22331 00
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
.+ .+.. -+... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 143 --~~-----------~l~~-----------------~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~ 192 (257)
T PRK06495 143 --GK-----------HAMR-----------------LFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEI 192 (257)
T ss_pred --HH-----------HHHH-----------------HhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence 00 0000 01112 23345679999999999999999999877776665554
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 193 a 193 (257)
T PRK06495 193 A 193 (257)
T ss_pred H
Confidence 3
No 162
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=8.9e-11 Score=118.31 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=109.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH--------H----HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------E----IR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se--------e----I~ 201 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++.+|++|++|||+-.+. |+++.... + ..
T Consensus 6 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 81 (255)
T PRK06563 6 RGHVLLIGLDRPAKRNA---F-DSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGI 81 (255)
T ss_pred ECCEEEEEECCcccccC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhh
Confidence 57899999964311110 0 1224678999999999999999999988653 44442210 0 11
Q ss_pred HHHH-HhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 202 RHVV-DFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 202 ~~I~-~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
+.+. .++..+|||||.++ .|.+||..|+++||.++|.+.+.+|...+ ++|+-+.. +.
T Consensus 82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p~~---------g~ 140 (255)
T PRK06563 82 DPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEV------------QRGILPFG---------GA 140 (255)
T ss_pred HHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhh------------hcCCCCCc---------cH
Confidence 2222 35567999999997 68899999999999999999998887543 22322100 00
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+. ..| ... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 141 ~-----------~~l~-----------~~v------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 191 (255)
T PRK06563 141 T-----------LRFP-----------QAA------GWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELA 191 (255)
T ss_pred H-----------HHHH-----------HHh------hHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHH
Confidence 0 0011 111 111 234467899999999999999999998887766655543
No 163
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.26 E-value=9.2e-11 Score=119.62 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=111.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------H---
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------E--- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------e--- 198 (537)
.+.|++|+++-+=..+. + +.-...++.+.++++..|++|++|||+-++. |+++... +
T Consensus 15 ~~~va~itlnrp~~~Na---l-~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 90 (275)
T PRK09120 15 EDGIAWVTLNRPEKRNA---M-SPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIR 90 (275)
T ss_pred ECCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHH
Confidence 56799999953211010 0 1124678999999999999999999998764 3443211 1
Q ss_pred -HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 199 -eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
.+.+.+..+...+|||||.++ .|.+||..|+++||.++|.+.+.++...+. +|+-+.
T Consensus 91 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~------------~Gl~p~--------- 149 (275)
T PRK09120 91 REAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEIN------------WGIPPG--------- 149 (275)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccc------------cCCCCC---------
Confidence 112234556667999999997 688999999999999999999998875432 233211
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+.. ..+. |.+.... .+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 150 ~g~~-----------~~l~-----------------~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~ 201 (275)
T PRK09120 150 GGVS-----------KAMA-----------------DTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRE 201 (275)
T ss_pred cchH-----------HHHH-----------------HHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHH
Confidence 0000 0000 1111222 234578999999999999999999988887766655
Q ss_pred HhC
Q 009327 356 RLG 358 (537)
Q Consensus 356 ~~g 358 (537)
.+.
T Consensus 202 ~a~ 204 (275)
T PRK09120 202 LAA 204 (275)
T ss_pred HHH
Confidence 543
No 164
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.26 E-value=1e-10 Score=118.07 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=110.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------eeI 200 (537)
++.|++|+++.+=..+. + +.-...++.+.++++..|++|++|||+-..+ |+++... ...
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (260)
T PRK05809 11 EGHIAVVTINRPKALNA---L-NSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLG 86 (260)
T ss_pred eCCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHH
Confidence 56799999964321111 0 1224678899999999999999999988652 4443211 112
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+. +|+.+. .+.
T Consensus 87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~------------~Gl~p~---------~g~ 145 (260)
T PRK05809 87 NKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVG------------LGITPG---------FGG 145 (260)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccc------------cCCCCC---------ccH
Confidence 2334456667999999997 688999999999999999999988874331 222110 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ .+. |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 146 ~~-----------~l~-----------------~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (260)
T PRK05809 146 TQ-----------RLA-----------------RIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALA 196 (260)
T ss_pred HH-----------HHH-----------------HHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHH
Confidence 00 000 111111 234466799999999999999999998777766665544
No 165
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.26 E-value=9.1e-11 Score=119.01 Aligned_cols=167 Identities=12% Similarity=0.153 Sum_probs=111.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------e 198 (537)
.+.|++|+++-+=..+. + +.-...++.+.++.+..|+.|++|||+-.+. |+++... .
T Consensus 13 ~~~v~~itlnrp~~~Na---l-~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 88 (265)
T PRK05674 13 PRGFATLWLSRADKNNA---F-NAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDAR 88 (265)
T ss_pred CCCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHH
Confidence 35799999953211110 0 1224678999999999999999999988753 4443311 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..++..+|||||.++ .|.+||..|+++||.++|.+++.++...+ ++|+.+.. |
T Consensus 89 ~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gi~p~~---~----- 148 (265)
T PRK05674 89 ELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEV------------RIGLAPAV---I----- 148 (265)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCccc------------ccCCCcch---h-----
Confidence 233445566678999999997 68899999999999999999998887543 22332210 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. .+...| |. ....+-++.|+.++++||+++||||++...+++.+.+.+.+
T Consensus 149 -~~-----------------------~l~~~v----G~-~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 199 (265)
T PRK05674 149 -SP-----------------------FVVKAI----GE-RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWI 199 (265)
T ss_pred -HH-----------------------HHHHHh----CH-HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHH
Confidence 00 011111 11 01234456899999999999999999998887776665554
No 166
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=4.7e-11 Score=121.39 Aligned_cols=167 Identities=15% Similarity=0.188 Sum_probs=109.9
Q ss_pred CC-eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH--------------
Q 009327 138 KG-SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-------------- 198 (537)
Q Consensus 138 ~~-~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se-------------- 198 (537)
++ .|++|+++.+=..+. + +.-.+++|.+.|+++..|+.|++|||+-+.. |+++....
T Consensus 12 ~~~~v~~itlnrp~~~Na---l-~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 87 (272)
T PRK06210 12 ADSGVAVITLNRPDRLNA---W-TPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVR 87 (272)
T ss_pred CCCCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccch
Confidence 45 799999964311110 0 1224678999999999999999999997653 34433210
Q ss_pred --------HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEE
Q 009327 199 --------EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQ 269 (537)
Q Consensus 199 --------eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v 269 (537)
.+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+ ++|+-+..
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p~~- 154 (272)
T PRK06210 88 PFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFA------------RRGLIAEH- 154 (272)
T ss_pred hhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHH------------hcCCCCCC-
Confidence 011223456567999999997 68899999999999999999999885422 22322110
Q ss_pred EeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchH
Q 009327 270 RIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 270 ~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd 348 (537)
+..+ .+... +... ..+-++.|+.|++++|++.||||++...++
T Consensus 155 --------g~~~-----------~l~~~-----------------ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 198 (272)
T PRK06210 155 --------GISW-----------ILPRL-----------------VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE 198 (272)
T ss_pred --------chhh-----------hhHhh-----------------hCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence 0000 00000 1112 234457899999999999999999998888
Q ss_pred HHHHHHHHh
Q 009327 349 VISMLKERL 357 (537)
Q Consensus 349 ~i~~l~~~~ 357 (537)
+.+.+.+.+
T Consensus 199 l~~~a~~~a 207 (272)
T PRK06210 199 LMERTLAYA 207 (272)
T ss_pred HHHHHHHHH
Confidence 777665554
No 167
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.2e-10 Score=117.26 Aligned_cols=165 Identities=13% Similarity=0.163 Sum_probs=109.3
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHH-----------HHHHHHHH
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGK-----------VEEIRRHV 204 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~-----------seeI~~~I 204 (537)
.|++|+++-+=..+. + +.-..+++.+.++++.+|++|++|||+-+. .|+++.. ...+.+.+
T Consensus 15 ~v~~itlnrp~~~Na---l-~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (251)
T PRK06023 15 GVQVIRFNRPEKKNA---I-TRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFL 90 (251)
T ss_pred cEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHH
Confidence 599999953211010 0 122467899999999999999999998764 2444421 11233445
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccC
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~ 283 (537)
..++..+|||||.++ .|..||..|+++||.++|.+.+.++...+. +|+-+.. +..+
T Consensus 91 ~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~------------~Gl~p~~---------g~~~-- 147 (251)
T PRK06023 91 IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVD------------LALVPEA---------GSSL-- 147 (251)
T ss_pred HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccc------------cCCCCCc---------hHHH--
Confidence 566678999999997 688999999999999999999998865432 2321100 0000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 284 ~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+... +... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 148 ---------~l~~~-----------------~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (251)
T PRK06023 148 ---------LAPRL-----------------MGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAA 196 (251)
T ss_pred ---------HHHHH-----------------HhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHH
Confidence 00000 1111 233456899999999999999999998777766655544
No 168
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.1e-10 Score=117.61 Aligned_cols=167 Identities=18% Similarity=0.188 Sum_probs=111.9
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-------------HH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------EE 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------ee 199 (537)
.++.|++|+++.+=. +. + +.-..+++.+.++++..|++|++|||+.... |+++... ..
T Consensus 8 ~~~~v~~itl~rp~~-Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (257)
T PRK07658 8 VEDHVAVITLNHPPA-NA---L-SSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQL 82 (257)
T ss_pred eeCCEEEEEECCCCC-CC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHH
Confidence 357899999975511 10 0 1224678889999999999999999988653 4444211 12
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
..+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.++...+. +|+-+. .+
T Consensus 83 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g 141 (257)
T PRK07658 83 GQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELN------------LGLIPG---------FA 141 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccc------------cCCCCC---------Cc
Confidence 23345556678999999997 688999999999999999999988875432 222110 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+... | | .. ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 142 ~~-----------~~l~~~-----------v----G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK07658 142 GT-----------QRLPRY-----------V----G--KAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLA 193 (257)
T ss_pred HH-----------HHHHHH-----------h----C--HHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHH
Confidence 00 001111 1 1 11 234456899999999999999999998777766665544
No 169
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.25 E-value=2.3e-11 Score=121.22 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=113.8
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHH----------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEE----------I 200 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~see----------I 200 (537)
.++.|++|.|+ ++...+ ......+|++++.+..+|+.+++|||....- |.++..... .
T Consensus 43 ~d~~I~lItlN------RP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~ 116 (290)
T KOG1680|consen 43 EDNGIALITLN------RPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIF 116 (290)
T ss_pred cCCCeEEEEeC------ChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccc
Confidence 56789999994 443322 3345779999999999999999999987552 333333322 1
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
-+....+..-+||||+.++ .|-.||.-||++||.+||.|++.+|.....+ |+-+
T Consensus 117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~------------Gi~p------------- 171 (290)
T KOG1680|consen 117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRM------------GIIP------------- 171 (290)
T ss_pred cchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeeccccccc------------CCcc-------------
Confidence 1111222234799999997 6889999999999999999999999865432 2111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
+.-.-+.|.. .|-.+ .+++-++.|+.++++||++.|||++|...++++..+.+.+.
T Consensus 172 -------~~GGT~rl~r-----------~vG~s-----~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~ 227 (290)
T KOG1680|consen 172 -------SWGGTQRLPR-----------IVGKS-----RALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAE 227 (290)
T ss_pred -------CCCchhhHHH-----------HhChH-----HHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHH
Confidence 0000111111 11111 15667788999999999999999999988887766655543
No 170
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.5e-10 Score=117.22 Aligned_cols=169 Identities=15% Similarity=0.198 Sum_probs=109.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------e 198 (537)
++.|++|+++-+=..+. ++..-..++|.+.++++..|++|++|||+-.+. |+++... .
T Consensus 10 ~~~v~~itlnrp~~~Na---l~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (266)
T PRK09245 10 DGHIVTLTMNRPETRNA---LSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQ 86 (266)
T ss_pred ECCEEEEEECCcccccC---CChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHH
Confidence 57899999954221110 000013568999999999999999999987653 4443221 1
Q ss_pred H----HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 199 E----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 199 e----I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
. +.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+-+.
T Consensus 87 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~p~------ 148 (266)
T PRK09245 87 GYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVK------------LGLIPG------ 148 (266)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccc------------cCcCCC------
Confidence 1 22334456567999999997 688999999999999999999988875332 232211
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
.+..+ .+... |-.. ...+-++.|+.++++||++.||||++...+++.+.+
T Consensus 149 ---~g~~~-----------~l~~~-----------vG~~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 198 (266)
T PRK09245 149 ---DGGAW-----------LLPRI-----------IGMA-----RAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAA 198 (266)
T ss_pred ---cchhh-----------hHHHH-----------hhHH-----HHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHH
Confidence 00000 00001 1000 123446679999999999999999999877776665
Q ss_pred HHHh
Q 009327 354 KERL 357 (537)
Q Consensus 354 ~~~~ 357 (537)
.+.+
T Consensus 199 ~~~a 202 (266)
T PRK09245 199 RALA 202 (266)
T ss_pred HHHH
Confidence 5543
No 171
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.1e-10 Score=117.86 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=111.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EE 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------ee 199 (537)
.++.|++|+++-+=. +. + +.-...++.+.++++.+|++|++|||+-.++ |+++... ..
T Consensus 9 ~~~~v~~itlnrp~~-Na---l-~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09076 9 IDGHVAILTLNNPPA-NT---W-TADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARR 83 (258)
T ss_pred EECCEEEEEECCCCc-CC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHH
Confidence 357899999975411 10 0 1224668889999999999999999998652 4444321 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+-+.. +
T Consensus 84 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~~---------g 142 (258)
T PRK09076 84 FGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEAS------------VGLLPCA---------G 142 (258)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccc------------cCCCCCc---------c
Confidence 23345566678999999998 688999999999999999999998875432 2322110 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+...+ ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 143 ~~-----------~~l~~~i-----------------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 194 (258)
T PRK09076 143 GT-----------QNLPWLV-----------------GEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALALA 194 (258)
T ss_pred HH-----------HHHHHHh-----------------CHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHH
Confidence 00 0011111 111 223456799999999999999999998777666655443
No 172
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.2e-10 Score=117.58 Aligned_cols=167 Identities=19% Similarity=0.108 Sum_probs=109.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHH---------HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE---------EIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~se---------eI~~~ 203 (537)
++.|++|+++.+=..+.- +.-..+++.+.++++..|++|++|||+-+++ |+++.... .....
T Consensus 11 ~~~v~~itlnrp~~~Nal----~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (259)
T PRK06494 11 KGHVTIVTLNRPEVMNAL----HLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGG 86 (259)
T ss_pred ECCEEEEEEcCccccCCC----CHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHH
Confidence 567999999543211100 1123578999999999999999999998763 55543211 11111
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+.+.. +..+
T Consensus 87 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~~---------g~~~- 144 (259)
T PRK06494 87 LTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEP------------RVGLAALA---------GGLH- 144 (259)
T ss_pred HHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCccc------------ccCCCCCc---------hHHH-
Confidence 2223356899999997 68899999999999999999999887543 22322210 0000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+. |-+... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 145 ----------~l~-----------------~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 193 (259)
T PRK06494 145 ----------RLP-----------------RQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWA 193 (259)
T ss_pred ----------HHH-----------------HHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence 000 111222 223467899999999999999999998777766655444
No 173
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.25 E-value=1.1e-10 Score=118.05 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=111.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-------HH----HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-------EE----IR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-------ee----I~ 201 (537)
++.|++|+++.+ ..+. + +.-..+++.+.++++..|++|++|||+-..+ |+++... .. ..
T Consensus 10 ~~~v~~itlnrp-~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 84 (261)
T PRK03580 10 NGSILEITLDRP-KANA---I-DAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGF 84 (261)
T ss_pred ECCEEEEEECCc-cccC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhh
Confidence 568999999765 2111 0 1224678999999999999999999987652 4444321 01 12
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
..+..+...+|||||.++ .|.+||.-|+++||.++|.+++.++...+. +|+.+.. +..
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~G~~p~~---------g~~ 143 (261)
T PRK03580 85 AGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAK------------LGIVPDS---------GGV 143 (261)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccc------------cCcCCCc---------cHH
Confidence 234556677999999997 688999999999999999999998875432 2222110 000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+.. . +... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 144 -----------~~l~~-----------~------vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (261)
T PRK03580 144 -----------LRLPK-----------R------LPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELA 193 (261)
T ss_pred -----------HHHHH-----------H------hCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence 00111 1 1111 234456799999999999999999998887776665544
No 174
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.24 E-value=1.3e-10 Score=116.74 Aligned_cols=167 Identities=17% Similarity=0.137 Sum_probs=110.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH-------HH--HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-------EI--RRHV 204 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se-------eI--~~~I 204 (537)
.+.|++|.++.+=..+. + +.-..+++.+.++++..|++|++|||+-+.. |+++.... .+ .+.+
T Consensus 12 ~~~v~~i~ln~p~~~Na---l-~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK07110 12 EEGIAQVTMQDRVNKNA---F-SDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLY 87 (249)
T ss_pred eCCEEEEEecCCCccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHH
Confidence 56799999964311110 0 1223578999999999999999999997653 45443211 11 1344
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccC
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~ 283 (537)
..+...+|||||.++ .|.+||+.|+++||.++|.+.+.++...+ ++|+.+.. +.
T Consensus 88 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~---- 142 (249)
T PRK07110 88 SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFM------------KYGFTPGM---------GA---- 142 (249)
T ss_pred HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchh------------ccCCCCCc---------hH----
Confidence 455567999999997 68899999999999999999988776433 22322110 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 284 ~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
...+.+ .+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 143 -------~~~l~~-----------------~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (249)
T PRK07110 143 -------TAILPE-----------------KLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELA 193 (249)
T ss_pred -------HHHHHH-----------------HhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHH
Confidence 000111 11122 234467899999999999999999998777776665554
No 175
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=1e-10 Score=120.69 Aligned_cols=165 Identities=14% Similarity=0.048 Sum_probs=110.9
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH----------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK---------------- 196 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~---------------- 196 (537)
.++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+-++. |+++..
T Consensus 11 ~~~~Va~ItLnrP~~~NA---l-~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 86 (298)
T PRK12478 11 TAGPVATITLNRPEQLNT---I-VPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWD 86 (298)
T ss_pred ccCCEEEEEecCCcccCC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccC
Confidence 357899999953211110 0 2234679999999999999999999988763 343321
Q ss_pred -HHHH----------HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCc
Q 009327 197 -VEEI----------RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGI 264 (537)
Q Consensus 197 -seeI----------~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI 264 (537)
...+ .+.+..+...+|||||.++ .|.+||.-|+++||.++|.+++.+|...+.. +|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l-----------~G~ 155 (298)
T PRK12478 87 PGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRM-----------WGA 155 (298)
T ss_pred chhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEecccccc-----------ccC
Confidence 0111 1134455667999999997 6889999999999999999999988754321 011
Q ss_pred ceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceee
Q 009327 265 EPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNV 343 (537)
Q Consensus 265 ~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i 343 (537)
.. + . .+ ...| ... ..+-++.|+.++++||+++||||++
T Consensus 156 ~~-----~------~---------------------~~---~~~v------G~~~A~~llltg~~i~A~eA~~~GLV~~v 194 (298)
T PRK12478 156 YL-----T------G---------------------MW---LYRL------SLAKVKWHSLTGRPLTGVQAAEAELINEA 194 (298)
T ss_pred Cc-----h------h---------------------HH---HHHh------hHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence 10 0 0 00 0011 122 2344678999999999999999999
Q ss_pred cCchHHHHHHHHHh
Q 009327 344 LYDDEVISMLKERL 357 (537)
Q Consensus 344 ~~~dd~i~~l~~~~ 357 (537)
...+++.+.+.+.+
T Consensus 195 v~~~~l~~~a~~~a 208 (298)
T PRK12478 195 VPFERLEARVAEVA 208 (298)
T ss_pred cCHHHHHHHHHHHH
Confidence 98887777666554
No 176
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=1.4e-10 Score=119.56 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=110.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
.+.|++|+++.+=..+. + +.-.+.+|.+.|+.+..|++|++|||+-+.. |+++...
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (296)
T PRK08260 11 ADGIATITLNRPDKLNA---F-TVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEAD 86 (296)
T ss_pred eCCEEEEEeCCCcccCC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccc
Confidence 57899999964211110 0 1123568999999999999999999988653 4443211
Q ss_pred ---------HHH----HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcC
Q 009327 198 ---------EEI----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVG 263 (537)
Q Consensus 198 ---------eeI----~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~G 263 (537)
..+ .+.+..++..+|||||.++ .|.+||+.|+++||.++|.+.+.++...+ ++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~G 154 (296)
T PRK08260 87 EEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFG------------RRG 154 (296)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchh------------hcC
Confidence 111 1234456667999999997 68899999999999999999999887533 233
Q ss_pred cceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCcee
Q 009327 264 IEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITN 342 (537)
Q Consensus 264 I~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~ 342 (537)
+-+.. +..+ .+... +... ..+-++.|+.++++||++.||||+
T Consensus 155 l~p~~---------g~~~-----------~l~r~-----------------vG~~~A~~llltg~~~~a~eA~~~GLv~~ 197 (296)
T PRK08260 155 IVPEA---------ASSW-----------FLPRL-----------------VGLQTALEWVYSGRVFDAQEALDGGLVRS 197 (296)
T ss_pred cCCCc---------chhh-----------hHHHh-----------------hCHHHHHHHHHcCCccCHHHHHHCCCcee
Confidence 32210 0000 00000 1111 234567899999999999999999
Q ss_pred ecCchHHHHHHHHHh
Q 009327 343 VLYDDEVISMLKERL 357 (537)
Q Consensus 343 i~~~dd~i~~l~~~~ 357 (537)
+...+++.+.+.+.+
T Consensus 198 vv~~~~l~~~a~~~a 212 (296)
T PRK08260 198 VHPPDELLPAARALA 212 (296)
T ss_pred ecCHHHHHHHHHHHH
Confidence 998887766665543
No 177
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=1.6e-10 Score=116.64 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=109.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------eeI~ 201 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++. ++|++|||+.++. |+++... +.+.
T Consensus 9 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 82 (255)
T PRK08150 9 DGGVATIGLNRPAKRNA---L-NDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWH 82 (255)
T ss_pred eCCEEEEEEcCCccccC---C-CHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHH
Confidence 46799999964311110 0 1123568888888876 7899999998764 4444321 2233
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.+|...+. +|+.+.. +..
T Consensus 83 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~~---------g~~ 141 (255)
T PRK08150 83 RVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQ------------RGIFVGG---------GGS 141 (255)
T ss_pred HHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccc------------cCCCCCc---------cHH
Confidence 445566677999999998 688999999999999999999999875442 2322210 000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+ .+... +... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 142 ~-----------~l~~~-----------------iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 191 (255)
T PRK08150 142 V-----------RVPRL-----------------IGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELA 191 (255)
T ss_pred H-----------HHHHH-----------------hCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHH
Confidence 0 01111 1111 234467899999999999999999998887777665554
No 178
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.24 E-value=1.5e-10 Score=117.91 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=109.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-----------HH--
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-----------EE-- 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-----------ee-- 199 (537)
++.|++|+++-+=..+. + +.-...++.+.++.+..|++|++|||+-+++ |+++... ..
T Consensus 20 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 95 (273)
T PRK07396 20 ADGIAKITINRPEVRNA---F-RPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLN 95 (273)
T ss_pred cCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhH
Confidence 56899999963211110 0 1224678999999999999999999998652 4443211 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
..+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+.. |+-+...
T Consensus 96 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~------------Gl~p~~~--------- 154 (273)
T PRK07396 96 VLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKV------------GSFDGGY--------- 154 (273)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccc------------cccCCch---------
Confidence 11233445567999999997 6889999999999999999999988754321 2111000
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.-..+... | |.. ...+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 155 -----------~~~~l~~~-----------v----G~~-~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a 206 (273)
T PRK07396 155 -----------GASYLARI-----------V----GQK-KAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWC 206 (273)
T ss_pred -----------HHHHHHHH-----------h----hHH-HHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHH
Confidence 00001111 1 110 1234456799999999999999999998887776665544
No 179
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=7.6e-11 Score=119.33 Aligned_cols=165 Identities=14% Similarity=0.173 Sum_probs=110.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------e 198 (537)
.+.|++|+++.+=..+. + +.-..+++.+.++++..|+.|++|||+-++. |+++... .
T Consensus 12 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK07468 12 ARGVATLTLNRPEKHNA---L-SARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEAR 87 (262)
T ss_pred CCcEEEEEEcCcccccC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHH
Confidence 35799999964321110 0 1234678899999999999999999998753 4544321 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..++..+|||||.++ .|.+||+.|+++||.++|.+.+.++...+ ++|+.+..
T Consensus 88 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~~Gl~p~~--------- 146 (262)
T PRK07468 88 RLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTET------------RLGLIPAT--------- 146 (262)
T ss_pred HHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchh------------ccCCCccc---------
Confidence 122334556678999999997 68899999999999999999998887543 23332211
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+.++ ++.. +.... .+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 147 g~~~-----------------------~~~~------vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~ 197 (262)
T PRK07468 147 ISPY-----------------------VVAR------MGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAE 197 (262)
T ss_pred chhh-----------------------HHhh------ccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence 0000 0101 22222 2346789999999999999999999877766554433
No 180
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.24 E-value=7.9e-11 Score=117.67 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=112.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------eeI~ 201 (537)
++.|++|+++.+=..+.- +.-.+++|.+.|+.+..|++|++||+.-... |+++... +.+.
T Consensus 5 ~~~v~~i~ln~p~~~N~l----~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 80 (245)
T PF00378_consen 5 EDGVATITLNRPEKRNAL----NPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQ 80 (245)
T ss_dssp ETTEEEEEEECGGGTTEB----SHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCCCCCC----CHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhc
Confidence 578999999755211110 1234679999999999999999888875442 4444222 3344
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.++|+.++++||.++|.+.+.++...+.. |+.+.
T Consensus 81 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~------------G~~p~------------- 135 (245)
T PF00378_consen 81 ELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRL------------GIFPG------------- 135 (245)
T ss_dssp HHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGG------------TSSST-------------
T ss_pred cccccchhhhhheeecccccccccccccccccceEEeecccceeeeeccc------------Ccccc-------------
Confidence 556666678999999997 6889999999999999999999988765432 22210
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. .....+...+.. . ...+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 136 ~-------g~~~~l~r~~g~-----------~-----~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 189 (245)
T PF00378_consen 136 A-------GGTFRLPRLIGP-----------S-----RARELLLTGEPISAEEALELGLVDEVVPDEELDEEALELA 189 (245)
T ss_dssp S-------THHHHHHHHHHH-----------H-----HHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHH
T ss_pred c-------ccccccceeeec-----------c-----cccccccccccchhHHHHhhcceeEEcCchhhhHHHHHHH
Confidence 0 000111111110 0 1224457899999999999999999998888666655544
No 181
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.24 E-value=4e-11 Score=113.93 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=85.4
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.++|+|.. .....+...|..+..++..+.|+|.+|||||++.++..|++.++.+ +.||++.+.|.
T Consensus 11 ~i~i~g~I~~-----------~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~--~~~v~t~~~g~ 77 (171)
T cd07017 11 IIFLGGPIDD-----------EVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI--KPPVSTICLGL 77 (171)
T ss_pred EEEEcCEEcH-----------HHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEEeE
Confidence 6999999975 4567899999999998888999999999999999999999999987 89999999999
Q ss_pred hhHHHHHHHHhcC--eEEEcCCceeee
Q 009327 472 AASGGYYMAMAAG--TILAENLTLTGS 496 (537)
Q Consensus 472 AasgG~~lA~a~D--~i~A~p~a~~Gs 496 (537)
|+|+|++|+++|| .+++.|+|.++.
T Consensus 78 aaS~~~~i~~~g~~~~r~~~~~a~~~~ 104 (171)
T cd07017 78 AASMGALLLAAGTKGKRYALPNSRIMI 104 (171)
T ss_pred ehhHHHHHHHcCCCCCEEEccchHHHH
Confidence 9999999999999 799999999983
No 182
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=1.8e-10 Score=116.98 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=109.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------H----H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------E----E 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------e----e 199 (537)
.+.|++|+++.+=..+. + +.-...++.+.++++..|++|++|||+-.+. |+++... . .
T Consensus 19 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 94 (268)
T PRK07327 19 PPGVLEIVLNGPGALNA---A-DARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWRE 94 (268)
T ss_pred CCCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHH
Confidence 46799999964321110 0 1224668999999999999999999987652 3443211 1 1
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+ ++|+.+.. +
T Consensus 95 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~~---------g 153 (268)
T PRK07327 95 ARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHT------------RLGVAAGD---------H 153 (268)
T ss_pred HHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCccc------------ccCCCCCc---------c
Confidence 22334455567999999997 68899999999999999999998886433 22332210 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+ .+... | |. ....+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 154 ~~~-----------~l~~~-----------v----G~-~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 205 (268)
T PRK07327 154 AAI-----------VWPLL-----------C----GM-AKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVA 205 (268)
T ss_pred hhh-----------HHHHH-----------h----CH-HHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence 000 00000 1 00 01223456899999999999999999998787776665544
No 183
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.23 E-value=1.1e-10 Score=116.71 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCe
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAY 242 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~ 242 (537)
.+.+.++++.+.+| ++|.|.++||||.+.++++|.+.|+++ ..+|.+|++ .|.|||.+||++||+|+|.|.+.
T Consensus 77 se~v~raI~~~~~~---~~IdLii~TpGG~v~AA~~I~~~l~~~---~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~ 150 (285)
T PF01972_consen 77 SEFVLRAIREAPKD---KPIDLIIHTPGGLVDAAEQIARALREH---PAKVTVIVPHYAMSAGTLIALAADEIVMGPGAV 150 (285)
T ss_pred HHHHHHHHHhcCCC---CceEEEEECCCCcHHHHHHHHHHHHhC---CCCEEEEECcccccHHHHHHHhCCeEEECCCCc
Confidence 34666777766555 468888999999999999999999965 678999996 78999999999999999999999
Q ss_pred eEEecccccccchhhHhhhc---CcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 009327 243 FSLYGLTVQASFLGGVLEKV---GIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED 319 (537)
Q Consensus 243 iGsiGv~~~~~~~~~ll~k~---GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~ 319 (537)
+|.+-...........++.+ ++.- + .+ +.+. +.+..++.++ ++. +|+...-+ .+++.++
T Consensus 151 LGpiDPqi~~~pA~sil~~~~~K~~~~--i-----~D--~tlI---ladia~KAi~----q~~-~~v~~lL~-~~~~~ek 212 (285)
T PF01972_consen 151 LGPIDPQIGQYPAASILKAVEQKPPDE--I-----DD--QTLI---LADIAEKAIR----QVR-EFVKELLK-DKMDEEK 212 (285)
T ss_pred cCCCCccccCCChHHHHHHHHhccccc--c-----CH--HHHH---HHHHHHHHHH----HHH-HHHHHHHH-cCCCHHH
Confidence 99875544332222222211 1000 0 00 0000 1122222222 221 22322222 2466666
Q ss_pred HHHHHc----c-----CcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 320 IERFIN----D-----GVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 320 v~~~~~----g-----~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
.+++++ | .+++.+||+++||==...-.+|+.+.+ +++-.
T Consensus 213 a~~ia~~L~~g~~tHdypi~~eea~~lGL~V~t~~p~ei~~lm-~lypq 260 (285)
T PF01972_consen 213 AEEIAEKLSSGKWTHDYPITVEEAKELGLPVSTDMPEEIYELM-DLYPQ 260 (285)
T ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHcCCCcCCCCcHHHHHHH-HhCcc
Confidence 666543 2 356789999999865554455555443 55543
No 184
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=8.9e-11 Score=117.96 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=108.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------eeI~ 201 (537)
.+.|++|+++.+=..+ .+ +.-..+++.+.++++.+|++|++|||+-.+. |+++... ..+.
T Consensus 10 ~~~v~~itlnrp~~~N---al-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (249)
T PRK05870 10 DDGVALITVNDPDRRN---AV-TAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIY 85 (249)
T ss_pred cCCEEEEEEcCCCccC---CC-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHH
Confidence 5679999996321101 00 1224678999999999999999999987653 4443221 1233
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+ ++|+.+.. +..
T Consensus 86 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p~~---------g~~ 144 (249)
T PRK05870 86 DGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQ------------KLGLHPGG---------GAT 144 (249)
T ss_pred HHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCccc------------ccCcCCCC---------cce
Confidence 344556667999999997 68899999999999999999998876433 23333210 000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+. + .|-+.... .+-++.|+.++++||++.||||++. +++.+.+.+.+
T Consensus 145 ~~-----------l-----------------~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a 192 (249)
T PRK05870 145 WM-----------L-----------------QRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELA 192 (249)
T ss_pred ee-----------H-----------------HhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHH
Confidence 00 0 01111222 3345689999999999999999998 56555554443
No 185
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=2.1e-10 Score=114.88 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=109.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH-------HHHHHHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK-------VEEIRRHVVD 206 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~-------seeI~~~I~~ 206 (537)
++.|++|+++-+=..+. + +.-.+.++.+.++++.+| ++++|||+-++. |+++.. .+.+.+.+..
T Consensus 7 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 81 (243)
T PRK07854 7 DGQVLTIELQRPERRNA---L-NAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHA 81 (243)
T ss_pred eCCEEEEEeCCCccccC---C-CHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHH
Confidence 56799999954321110 0 112356888899888855 899999987653 444321 1223344555
Q ss_pred hhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCC
Q 009327 207 FKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285 (537)
Q Consensus 207 lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~ 285 (537)
+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+. +|+.+.. +
T Consensus 82 l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~------------~G~~p~~---------g------- 133 (243)
T PRK07854 82 IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAK------------YGIALDN---------W------- 133 (243)
T ss_pred HHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccc------------cccCCCc---------c-------
Confidence 6667999999997 688999999999999999999998875442 2322110 0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 286 ~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
.-..+...+ |. ....+-++.|+.++++||++.||||++...+++.+.+.+....
T Consensus 134 ----~~~~l~~~~---------------G~-~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~a~~~a~~l~~~ 187 (243)
T PRK07854 134 ----TIRRLSSLV---------------GG-GRARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIAGL 187 (243)
T ss_pred ----HHHHHHHHh---------------CH-HHHHHHHHcCCCcCHHHHHHCCCcccccCHHHHHHHHHHHHhC
Confidence 000111111 11 0123446789999999999999999998766666666655543
No 186
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=2.6e-10 Score=114.66 Aligned_cols=165 Identities=14% Similarity=0.094 Sum_probs=113.1
Q ss_pred ccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------HH------
Q 009327 136 VRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------EE------ 199 (537)
Q Consensus 136 ~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------ee------ 199 (537)
...+.|++|+++-+= .+. + +.-..+++.+.++++..|+.|++|||+-.+. |+++... +.
T Consensus 7 ~~~~~v~~itlnrp~-~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (249)
T PRK07938 7 TPEPGIAEVTVDYPP-VNA---L-PSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANR 81 (249)
T ss_pred ccCCCEEEEEECCCC-ccc---C-CHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHH
Confidence 346889999997541 110 0 1224678999999999999999999998654 4554321 11
Q ss_pred -HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 200 -IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 200 -I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
..+.+..+...+|||||.++ .|.+||.-|+++||.+++.+++.++...+. +|+. |
T Consensus 82 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~------------~G~~------g----- 138 (249)
T PRK07938 82 GCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVD------------RGAL------G----- 138 (249)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccce------------ecCc------h-----
Confidence 12334456677999999997 688999999999999999999988875432 2220 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
... .+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 139 -~~~-----------~l~~~-----------------vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 189 (249)
T PRK07938 139 -AAT-----------HLQRL-----------------VPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEV 189 (249)
T ss_pred -hHH-----------HHHHh-----------------cCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHH
Confidence 000 01111 1111 23445789999999999999999999888777666655
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 190 a 190 (249)
T PRK07938 190 A 190 (249)
T ss_pred H
Confidence 4
No 187
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=2.4e-10 Score=115.63 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=108.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HHH-
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEI- 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------eeI- 200 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++. |+.+++|||+-.+. |+++... ..+
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK08140 11 EAGVATLTLNRPDKLNS---F-TREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIE 85 (262)
T ss_pred ECCEEEEEecCCcccCC---C-CHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHH
Confidence 56899999953211010 0 1224678999999999 99999999987653 3443211 111
Q ss_pred ---HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 201 ---RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 201 ---~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+ ++|+-+.
T Consensus 86 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~G~~p~--------- 144 (262)
T PRK08140 86 TFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFV------------KIGLVPD--------- 144 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEecccc------------ccCCCCC---------
Confidence 1234456567999999997 68899999999999999999998875432 2333211
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+..+ .+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 145 ~g~~~-----------~l~~~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 196 (262)
T PRK08140 145 SGGTW-----------FLPRL-----------------VGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQ 196 (262)
T ss_pred ccHHH-----------HHHHH-----------------hCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHH
Confidence 00000 01111 1111 2234678999999999999999999988777666655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 197 ~a 198 (262)
T PRK08140 197 LA 198 (262)
T ss_pred HH
Confidence 54
No 188
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=2.5e-10 Score=115.67 Aligned_cols=167 Identities=16% Similarity=0.109 Sum_probs=109.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCC-ceEEEEEeCCC----CCCHHHH--------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR-IVGIYLHIEPL----SCGWGKV--------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~-IkaIVL~InSp----GG~~~~s--------------e 198 (537)
++.|++|+++.+=..+. + +.-..++|.+.++.+..|++ |++|||+...+ |+++... .
T Consensus 11 ~~~i~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (266)
T PRK05981 11 DGGVAILTLDHPEVMNA---V-SIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGA 86 (266)
T ss_pred ECCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHH
Confidence 56899999964211110 0 11235789999999988764 99999998653 4443221 1
Q ss_pred ----HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 199 ----EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 199 ----eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
.+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+-+..
T Consensus 87 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~------------~lG~~p~~----- 149 (266)
T PRK05981 87 ALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFR------------RIGLVPDG----- 149 (266)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHh------------hcCCCCCc-----
Confidence 123344556677999999997 68899999999999999999988875422 23432210
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISM 352 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~ 352 (537)
+..+ .+...+ ... ..+-++.|+.|+++||++.||||++...+++.+.
T Consensus 150 ----g~~~-----------~l~~~v-----------------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~ 197 (266)
T PRK05981 150 ----GSTW-----------LLPRLV-----------------GKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAE 197 (266)
T ss_pred ----cHHH-----------HHHHHh-----------------HHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHH
Confidence 0000 011111 111 2334678999999999999999999988777766
Q ss_pred HHHHh
Q 009327 353 LKERL 357 (537)
Q Consensus 353 l~~~~ 357 (537)
+.+.+
T Consensus 198 a~~~a 202 (266)
T PRK05981 198 AMKLA 202 (266)
T ss_pred HHHHH
Confidence 65554
No 189
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=2.6e-10 Score=114.96 Aligned_cols=167 Identities=18% Similarity=0.159 Sum_probs=108.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH------HHHHHHHHh
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------EIRRHVVDF 207 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se------eI~~~I~~l 207 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-.+. |+++.... ...+.+..+
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08252 10 RGRVLIITINRPEARNA---V-NAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGL 85 (254)
T ss_pred ECCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHH
Confidence 56899999953211110 0 1224678999999999999999999987653 45443211 111112111
Q ss_pred --hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCC
Q 009327 208 --KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRK 284 (537)
Q Consensus 208 --r~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~ 284 (537)
+..+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+.+.. +..+
T Consensus 86 ~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~~~--- 141 (254)
T PRK08252 86 TERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEV------------KRGLVAAG---------GGLL--- 141 (254)
T ss_pred HHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchh------------hcCCCCCc---------hHHH---
Confidence 246899999997 68899999999999999999999887543 22332210 0000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 285 TMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 285 ~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ . |.+.... .+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 142 --------~l-----------~------~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 190 (254)
T PRK08252 142 --------RL-----------P------RRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELA 190 (254)
T ss_pred --------HH-----------H------HHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHH
Confidence 00 0 1112222 34456899999999999999999998777766655543
No 190
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=2.8e-10 Score=114.69 Aligned_cols=167 Identities=16% Similarity=0.145 Sum_probs=110.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
.+.|++|+++.+=..+. + +.-...+|.+.++++..|+.+++|||+-... |+++...
T Consensus 9 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07260 9 EDDLATLTLNRPEVSNG---F-NIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIA 84 (255)
T ss_pred ECCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHH
Confidence 46799999964321110 0 1123568999999999999999999987653 4444321
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
+.+.+.+..++..+|||||.++ .|.+||.-|+++||.++|.+.+.++...+ ++|+.+...
T Consensus 85 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~~Gl~p~~g------- 145 (255)
T PRK07260 85 ELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV------------GVGLAPDAG------- 145 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHh------------hcCCCCCCc-------
Confidence 1123334456667999999997 68899999999999999999999886433 234332100
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
..+ .+ . |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 146 --~~~-----------~l-----------~------~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~ 195 (255)
T PRK07260 146 --GLF-----------LL-----------T------RAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQ 195 (255)
T ss_pred --hhh-----------hh-----------H------HhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHH
Confidence 000 00 0 111111 2344567999999999999999999987777666555
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 196 ~a 197 (255)
T PRK07260 196 LL 197 (255)
T ss_pred HH
Confidence 44
No 191
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=1.9e-10 Score=118.18 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=109.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
++.|++|+++.+=..+. + +.-..++|.+.++++.+|++|++|||+-... |+++...
T Consensus 11 ~~~Va~ItlnrP~~~Na---l-~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 86 (288)
T PRK08290 11 AGRIARITLNRPEARNA---Q-NRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTL 86 (288)
T ss_pred eCCEEEEEecCccccCC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccccccc
Confidence 56799999964321110 0 1124678999999999999999999988764 3433210
Q ss_pred ------------------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhH
Q 009327 198 ------------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGV 258 (537)
Q Consensus 198 ------------------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~l 258 (537)
..+.+.+..++..+|||||.++ .|.+||+-|+++||.++|.+++.++...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~---------- 156 (288)
T PRK08290 87 WWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVV---------- 156 (288)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccc----------
Confidence 1122233455667999999997 68899999999999999999998876533
Q ss_pred hhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHc
Q 009327 259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEE 337 (537)
Q Consensus 259 l~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~ 337 (537)
++|+. . .+ .+ .+... +... ..+-++.|+.|+++||++.
T Consensus 157 --~lGl~-~---~~-------~~-----------~l~~~-----------------iG~~~A~~llltG~~i~A~eA~~~ 195 (288)
T PRK08290 157 --RMGIP-G---VE-------YF-----------AHPWE-----------------LGPRKAKELLFTGDRLTADEAHRL 195 (288)
T ss_pred --ccCcC-c---ch-------HH-----------HHHHH-----------------hhHHHHHHHHHcCCCCCHHHHHHC
Confidence 23321 0 00 00 00000 1111 2344678999999999999
Q ss_pred CCceeecCchHHHHHHHHHh
Q 009327 338 GFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 338 GLVD~i~~~dd~i~~l~~~~ 357 (537)
||||++...+++.+.+.+.+
T Consensus 196 GLV~~vv~~~~l~~~a~~~a 215 (288)
T PRK08290 196 GMVNRVVPRDELEAETLELA 215 (288)
T ss_pred CCccEeeCHHHHHHHHHHHH
Confidence 99999998777776665554
No 192
>PLN02921 naphthoate synthase
Probab=99.21 E-value=2.9e-10 Score=118.67 Aligned_cols=165 Identities=14% Similarity=0.121 Sum_probs=110.4
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH--------HH---
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV--------EE--- 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s--------ee--- 199 (537)
.+.|++|.++-+ +..+ +.-.+.+|.+.++.+..|+.|++|||+-..+ |+++... +.
T Consensus 74 ~~~Va~ItLnrP------~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (327)
T PLN02921 74 GEGIAKITINRP------ERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGR 147 (327)
T ss_pred CCCEEEEEECCC------CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHH
Confidence 578999999532 1111 2234678999999999999999999998652 4554321 01
Q ss_pred --HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 200 --IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 200 --I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+..++..+|||||.++ .|.+||.-|+++||.++|.+.+.+|...+.. |+-...
T Consensus 148 ~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~------------Gl~p~~-------- 207 (327)
T PLN02921 148 LNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKV------------GSFDAG-------- 207 (327)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCccccc------------CCCCCc--------
Confidence 11223455567999999997 5889999999999999999999998764422 211100
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
+-. ..+. |-+... ..+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 208 -gg~-----------~~L~-----------------rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~ 258 (327)
T PLN02921 208 -YGS-----------SIMA-----------------RLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVK 258 (327)
T ss_pred -cHH-----------HHHH-----------------HHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHH
Confidence 000 0011 111122 2334678999999999999999999988877766655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 259 ~a 260 (327)
T PLN02921 259 WC 260 (327)
T ss_pred HH
Confidence 44
No 193
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=2.5e-10 Score=115.59 Aligned_cols=167 Identities=16% Similarity=0.099 Sum_probs=109.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH------H-------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------E-------I 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se------e-------I 200 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+-.+. |+++.... . .
T Consensus 12 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07799 12 RGHTLIVTMNRPEARNA---L-STEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDP 87 (263)
T ss_pred ECCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhh
Confidence 56899999964311110 0 1224679999999999999999999988652 45443210 0 0
Q ss_pred --HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 201 --RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 201 --~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
...+..++..+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+-+..
T Consensus 88 ~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~~--------- 146 (263)
T PRK07799 88 SRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAK------------WSLFPMG--------- 146 (263)
T ss_pred hHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccc------------cCcCCCc---------
Confidence 0113334567999999997 688999999999999999999998875432 2222100
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+.. ..+. |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 147 g~~-----------~~l~-----------------r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 198 (263)
T PRK07799 147 GSA-----------VRLV-----------------RQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALEL 198 (263)
T ss_pred cHH-----------HHHH-----------------HHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHH
Confidence 000 0000 111112 23446789999999999999999999877766655544
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 199 a 199 (263)
T PRK07799 199 A 199 (263)
T ss_pred H
Confidence 3
No 194
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.19 E-value=4e-10 Score=115.15 Aligned_cols=166 Identities=11% Similarity=0.170 Sum_probs=110.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC------CCCCHHHH----------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP------LSCGWGKV----------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS------pGG~~~~s----------eeI~ 201 (537)
.+.|++|+++.+ ..+. + +.-.++++.+.++++.+|++|++|||+-+. .|+++... .++.
T Consensus 19 ~~~Va~itlnr~-~~Na---l-~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 93 (278)
T PLN03214 19 PGGIAVVWLAKE-PVNS---M-TLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFW 93 (278)
T ss_pred CCCEEEEEECCC-CCCC---C-CHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHH
Confidence 467999999753 1110 0 122467899999999999999999998864 23443211 1222
Q ss_pred ----HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcc-eEEEEecccc
Q 009327 202 ----RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIE-PQVQRIGKYK 275 (537)
Q Consensus 202 ----~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~-~~~v~~G~yK 275 (537)
+.+..++..+|||||.++ .|.+||+-|+++||.+++.+.+.++...+. +|+. +..
T Consensus 94 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------lGl~~p~~------- 154 (278)
T PLN03214 94 LTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVA------------LGIPVPKF------- 154 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHH------------hCCCCCCh-------
Confidence 234556677999999997 688999999999999999999988875332 2321 100
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
+. -..+ .|-+.... .+-++.|+.|+++||++.||||++...+++.+.+.
T Consensus 155 --~~-----------~~~l-----------------~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 204 (278)
T PLN03214 155 --WA-----------RLFM-----------------GRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA 204 (278)
T ss_pred --hH-----------HHHH-----------------HHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH
Confidence 00 0001 11122223 33467799999999999999999998787776655
Q ss_pred HHh
Q 009327 355 ERL 357 (537)
Q Consensus 355 ~~~ 357 (537)
+.+
T Consensus 205 ~~a 207 (278)
T PLN03214 205 SAM 207 (278)
T ss_pred HHH
Confidence 543
No 195
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=3.5e-10 Score=114.36 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=107.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------H----HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------E----EI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------e----eI 200 (537)
++.|++|+++-+=..+. + +.-...++.+.++++ +|+++++|||+-+++ |+++... . .+
T Consensus 13 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (260)
T PRK07659 13 EGRVATIMLNRPEALNA---L-DEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTI 87 (260)
T ss_pred eCCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHH
Confidence 57799999853211110 0 122467899999998 689999999988764 4444321 1 12
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+-+. .+.
T Consensus 88 ~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~ 146 (260)
T PRK07659 88 SEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFI------------GIGLIPD---------GGG 146 (260)
T ss_pred HHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchh------------hcCCCCC---------Cch
Confidence 2334445567999999997 68899999999999999999998886533 2333221 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ .+ .|.+.... .+-++.|+.++++||++.||||++. .+++.+.+.+.+
T Consensus 147 ~~-----------~L-----------------~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a 196 (260)
T PRK07659 147 HF-----------FL-----------------QKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKI 196 (260)
T ss_pred hh-----------hH-----------------HHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHH
Confidence 00 00 01122222 2345679999999999999999998 666655554443
No 196
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.17 E-value=1.7e-10 Score=116.41 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=112.5
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-------------HHHH
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------EEIR 201 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------eeI~ 201 (537)
+.|++|+++-+-..+. -+.-..+++.++++++..|+.|++|||+-+.. |+++... ....
T Consensus 13 ~~v~~itlnrp~~~Na----l~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 88 (257)
T COG1024 13 DGIAVITLNRPEKLNA----LNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQ 88 (257)
T ss_pred CCEEEEEecCcccccC----CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHH
Confidence 3499999953322110 01234678999999999999999999998874 4444331 1122
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..++..+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+.. |+-+.. +.
T Consensus 89 ~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~i------------Gl~Pg~---------g~- 146 (257)
T COG1024 89 DLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNL------------GLLPGD---------GG- 146 (257)
T ss_pred HHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCccccc------------ccCCCC---------cH-
Confidence 246667778999999997 6889999999999999999999999875532 222210 00
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHccCcccHHHHHHcCCceeecCc-hHHHHHHHHHhC
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIE-RFINDGVYKVERLKEEGFITNVLYD-DEVISMLKERLG 358 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~-~~~~g~v~ta~eAle~GLVD~i~~~-dd~i~~l~~~~g 358 (537)
-..+ .|-....... -++.|+.++++||++.||||++... +++.+.+.+.+.
T Consensus 147 ----------~~~l-----------------~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~ 199 (257)
T COG1024 147 ----------TQRL-----------------PRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELAR 199 (257)
T ss_pred ----------HHHH-----------------HHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHH
Confidence 0000 1111122222 3678999999999999999998874 566666655543
No 197
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.16 E-value=1.9e-11 Score=118.24 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=100.4
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCc---------------hH
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGD---------------AL 446 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~---------------~~ 446 (537)
.++.|..|.+|+|-.. |+.+-.+..++.+.+..+.+||+.|+|||.. +|.|=+ -.
T Consensus 28 ~~~~V~hv~lnRPsk~------Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~ 101 (292)
T KOG1681|consen 28 AQPFVYHVQLNRPSKL------NALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDV 101 (292)
T ss_pred CCCeEEEEEecCcchh------hhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchH
Confidence 4678999999999765 7888888999999999999999999999942 233322 11
Q ss_pred --HHHHHHHHHHHhc-------C-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHH
Q 009327 447 --ASDLMWREIRLLS-------E-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEK 512 (537)
Q Consensus 447 --~s~~i~~~i~~~~-------~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k 512 (537)
.+..+.+.|+.++ + +||||++|+|+|.|||..|..+||++||++.|.|- .||+....+.+.+|.+.
T Consensus 102 aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~Rlpkv 181 (292)
T KOG1681|consen 102 ARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKV 181 (292)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHH
Confidence 1234444444331 2 89999999999999999999999999999999998 69999999999998888
Q ss_pred hC
Q 009327 513 IG 514 (537)
Q Consensus 513 ~G 514 (537)
+|
T Consensus 182 VG 183 (292)
T KOG1681|consen 182 VG 183 (292)
T ss_pred hc
Confidence 88
No 198
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=4.4e-10 Score=113.34 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=108.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH-----HHH-----HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-----EIR-----RH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se-----eI~-----~~ 203 (537)
++.|++|+++.+=..+. + +.-..+++.+.++.+..|++|++|||+-.+. |+++.... +.. ..
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08259 10 NGPVTTVILNRPEVRNA---V-DGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPM 85 (254)
T ss_pred ECCEEEEEecCCccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchh
Confidence 56899999964321110 0 1224678999999999999999999987653 45543211 111 00
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
...+...+||||+.++ .|.+||+-|+++||.++|.+++.+|...+ ++|+.+.. +..
T Consensus 86 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~~-- 142 (254)
T PRK08259 86 GPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCR------------RWGVPLID---------GGT-- 142 (254)
T ss_pred hhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCccc------------ccCCCCCc---------cHH--
Confidence 1111146899999997 68899999999999999999998876433 22322110 000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+.. .+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 143 ---------~~l~~-----------------~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 192 (254)
T PRK08259 143 ---------VRLPR-----------------LIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELA 192 (254)
T ss_pred ---------HHHHH-----------------HhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHH
Confidence 00111 11112 234467799999999999999999998888777766554
No 199
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=5.7e-10 Score=112.78 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=75.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH--------H------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------E------ 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se--------e------ 199 (537)
++.|++|+++.+=..+. + +....++|.+.++++.+|++|++|||+-.+. |+++.... .
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK07509 10 EDGIADVRLNRPDKMNA---L-DFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLP 85 (262)
T ss_pred eCCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhH
Confidence 57899999964321110 0 1234678999999999999999999987653 44432210 1
Q ss_pred -----HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEec
Q 009327 200 -----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYG 247 (537)
Q Consensus 200 -----I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiG 247 (537)
+.+.+..++..+|||||.++ .|.+||+-|+++||.++|.+.+.++...
T Consensus 86 ~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe 139 (262)
T PRK07509 86 GNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIME 139 (262)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecch
Confidence 11223334567999999997 6889999999999999999999888753
No 200
>PRK08321 naphthoate synthase; Validated
Probab=99.15 E-value=6.6e-10 Score=114.87 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=107.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-----------CCCCHHHH---------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----------LSCGWGKV--------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-----------pGG~~~~s--------- 197 (537)
.+.|++|+++-+=..+. + +.-.+.+|.+.++.+..|++|++|||+-+. .|+++...
T Consensus 32 ~~~va~itlnrP~~~Na---l-~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~ 107 (302)
T PRK08321 32 DQGTVRIAFDRPEVRNA---F-RPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAE 107 (302)
T ss_pred CCCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccc
Confidence 56799999954311010 0 122356899999999999999999999864 24443210
Q ss_pred -------H--HH-----HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEec-CCCeeEEecccccccchhhHhhh
Q 009327 198 -------E--EI-----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAP-PSAYFSLYGLTVQASFLGGVLEK 261 (537)
Q Consensus 198 -------e--eI-----~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~-p~s~iGsiGv~~~~~~~~~ll~k 261 (537)
. .. .+....+...+|||||.++ .|.+||.-|+++||.++|. +.+.++...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~------------ 175 (302)
T PRK08321 108 GDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDAD------------ 175 (302)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccc------------
Confidence 0 01 1222345567999999997 6889999999999999998 67888764321
Q ss_pred cCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCc
Q 009327 262 VGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFI 340 (537)
Q Consensus 262 ~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLV 340 (537)
+|+.+. .. .-..+... +... ..+-++.|+.++++||++.|||
T Consensus 176 ~Gl~p~-------------~~-------~~~~L~r~-----------------vG~~~A~~l~ltG~~~~A~eA~~~GLv 218 (302)
T PRK08321 176 VGSFDG-------------GY-------GSAYLARQ-----------------VGQKFAREIFFLGRTYSAEEAHDMGAV 218 (302)
T ss_pred cccCCC-------------ch-------HHHHHHHH-----------------hCHHHHHHHHHcCCccCHHHHHHCCCc
Confidence 121110 00 00001111 1111 2345678999999999999999
Q ss_pred eeecCchHHHHHHHHHh
Q 009327 341 TNVLYDDEVISMLKERL 357 (537)
Q Consensus 341 D~i~~~dd~i~~l~~~~ 357 (537)
|++...+++.+.+.+.+
T Consensus 219 ~~vv~~~~l~~~a~~~a 235 (302)
T PRK08321 219 NAVVPHAELETEALEWA 235 (302)
T ss_pred eEeeCHHHHHHHHHHHH
Confidence 99998777766655544
No 201
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=3.2e-10 Score=114.57 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=77.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH---------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK---------------VE 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~---------------se 198 (537)
.+.|++|.++.+=..+. + +.-...++.+.++.+..|++|++|||.-.+. |+++.. ..
T Consensus 13 ~~~v~~i~lnrp~~~Na---l-~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 88 (260)
T PRK07827 13 DGGVATLTLDSPHNRNA---L-SARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAR 88 (260)
T ss_pred eCCEEEEEEcCccccCC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHH
Confidence 56899999964311110 0 1224678999999999999999999987652 344321 11
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv 248 (537)
.+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+
T Consensus 89 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~ 139 (260)
T PRK07827 89 EMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEA 139 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCccc
Confidence 233345556677999999997 68899999999999999999998887544
No 202
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.2e-10 Score=123.26 Aligned_cols=97 Identities=26% Similarity=0.321 Sum_probs=86.9
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEE
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVI 465 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVI 465 (537)
.++.|.++.++|.|.+ .+.+.+.+.|+.+.++ +..+|||.+|+|||.+.++.+|.++|.+. +.||+
T Consensus 24 ~~~~v~vi~i~g~I~~-----------~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~s--~vPV~ 89 (436)
T COG1030 24 AEKKVYVIEIDGAIDP-----------ASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILNS--PVPVI 89 (436)
T ss_pred cCCeEEEEEecCccCH-----------HHHHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHHcC--CCCEE
Confidence 4578999999999986 4677899999988864 67899999999999999999999999865 99999
Q ss_pred EEEC---chhhHHHHHHHHhcCeEEEcCCceeee
Q 009327 466 ASMS---DVAASGGYYMAMAAGTILAENLTLTGS 496 (537)
Q Consensus 466 A~v~---G~AasgG~~lA~a~D~i~A~p~a~~Gs 496 (537)
.+|. +.|+|+|.||+++||+++|+|.|.+|+
T Consensus 90 ~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGa 123 (436)
T COG1030 90 GYVVPDGARAASAGTYILMATHIAAMAPGTNIGA 123 (436)
T ss_pred EEEcCCCcchhchhhHHHHhcChhhhCCCCcccc
Confidence 9994 469999999999999999999999996
No 203
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.12 E-value=1.1e-09 Score=110.31 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=104.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH---------HHHHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK---------VEEIRRHV 204 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~---------seeI~~~I 204 (537)
++.|++|+++.+ +. . .+ +.-.++++.+.++++.+|+++++|||+-+.. |+++.. ...+.+.+
T Consensus 8 ~~~v~~itlnrp--~~-N-al-~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 82 (251)
T TIGR03189 8 DGKLLRLRLARP--KA-N-IV-DAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLV 82 (251)
T ss_pred eCCEEEEEeCCC--Cc-C-CC-CHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHH
Confidence 467999999766 11 1 01 2234678999999999999999999988653 454432 11123344
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccC
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~ 283 (537)
..++..+|||||.++ .|.+||.-|+++||.++|.+.+.++...+ ++|+.+.. + .
T Consensus 83 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~---~------~---- 137 (251)
T TIGR03189 83 IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEI------------VLGVFAPA---A------S---- 137 (251)
T ss_pred HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchh------------hcCCCCCc---h------H----
Confidence 556677999999997 68899999999999999999999887533 22321100 0 0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 284 ~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
..+. |.+... ..+-++.|+.++++||++.||||++...
T Consensus 138 --------~~l~-----------------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 138 --------CLLP-----------------ERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred --------HHHH-----------------HHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence 0011 111122 2334567999999999999999999753
No 204
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.12 E-value=8.4e-10 Score=116.01 Aligned_cols=166 Identities=10% Similarity=-0.004 Sum_probs=110.3
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHH------------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE------------E 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~se------------e 199 (537)
..+.|++|+++-+=..+. + +.....++.+.++.+..|+.|++|||+-..+ |+++.... .
T Consensus 9 ~~~~v~~itLnrP~~~Na---l-~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (342)
T PRK05617 9 VEGGVGVITLNRPKALNA---L-SLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADR 84 (342)
T ss_pred EECCEEEEEECCCccccC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHH
Confidence 357799999963211010 0 1234678999999999999999999998763 45543210 1
Q ss_pred ----HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 200 ----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 200 ----I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
+.+.+..+...+|||||.++ .|.+||.-|+++||.++|.+.+.+|...+.. ++..-.|......+.
T Consensus 85 ~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~l------Gl~P~~g~~~~L~r~--- 155 (342)
T PRK05617 85 FFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGI------GFFPDVGGTYFLSRA--- 155 (342)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCcccc------CcCCCccceeEehhc---
Confidence 11233445567999999997 6889999999999999999999998765422 111111111111110
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
+- ....+-++.|+.|+++||++.||||++...+++.....
T Consensus 156 ---------------------------------------~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~ 195 (342)
T PRK05617 156 ---------------------------------------PG-ALGTYLALTGARISAADALYAGLADHFVPSADLPALLD 195 (342)
T ss_pred ---------------------------------------cc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHH
Confidence 00 11344567899999999999999999998887766544
Q ss_pred H
Q 009327 355 E 355 (537)
Q Consensus 355 ~ 355 (537)
+
T Consensus 196 ~ 196 (342)
T PRK05617 196 A 196 (342)
T ss_pred H
Confidence 3
No 205
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.12 E-value=1.2e-09 Score=112.05 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=105.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhc-----CCCceEEEEEeCC-----CCCCHHHH---------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAY-----DPRIVGIYLHIEP-----LSCGWGKV---------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~-----D~~IkaIVL~InS-----pGG~~~~s---------e 198 (537)
++.|++|.++ + +... .+ +.-.++++.+.++++.. |+.|++|||+-+. .|+++... +
T Consensus 24 ~~~ia~itl~-p--~~~N-al-~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~ 98 (287)
T PRK08788 24 ERNVMWMYMR-A--QPRP-CF-NLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRD 98 (287)
T ss_pred cCCEEEEEEC-C--CCCC-CC-CHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchH
Confidence 5678888884 1 1110 01 11236788899999887 8999999999872 24544321 1
Q ss_pred H-------HHHHHHHhh---hcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceE
Q 009327 199 E-------IRRHVVDFK---KSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ 267 (537)
Q Consensus 199 e-------I~~~I~~lr---~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~ 267 (537)
. +.+.+.++. ..+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+ ++|+.+.
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev------------~lGl~p~ 166 (287)
T PRK08788 99 ALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEI------------LFNLFPG 166 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchh------------hhCcCCC
Confidence 1 111122222 46899999997 67899999999999999999998887543 2232110
Q ss_pred EEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 268 ~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
. + .-..+. ..| ... ..+-++.|+.++++||++.||||++...
T Consensus 167 ~---------g-----------~~~~l~-----------~~v------G~~~A~ellltG~~l~A~eA~~~GLV~~vv~~ 209 (287)
T PRK08788 167 M---------G-----------AYSFLA-----------RRV------GPKLAEELILSGKLYTAEELHDMGLVDVLVED 209 (287)
T ss_pred c---------h-----------HHHHHH-----------HHh------hHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 0 0 000011 111 111 2344678999999999999999999987
Q ss_pred hHHHHHHHHHh
Q 009327 347 DEVISMLKERL 357 (537)
Q Consensus 347 dd~i~~l~~~~ 357 (537)
+++.+.+.+.+
T Consensus 210 ~el~~~a~~~a 220 (287)
T PRK08788 210 GQGEAAVRTFI 220 (287)
T ss_pred hHHHHHHHHHH
Confidence 77766655544
No 206
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.12 E-value=3e-10 Score=110.43 Aligned_cols=92 Identities=24% Similarity=0.218 Sum_probs=82.7
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.|.|+|.+ .+...+.+.|..+...+..+.|.|.+|||||++.++..|++.|+.+ +.||++.+.|
T Consensus 24 r~I~i~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~--~~~V~t~v~G 90 (197)
T PRK14512 24 RSIVIAGEINK-----------DLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFV--KPKVFTIGVG 90 (197)
T ss_pred cEEEECCEEcH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence 45888999976 4567889999888875667999999999999999999999999987 8899999999
Q ss_pred hhhHHHHHHHHhcCe--EEEcCCceee
Q 009327 471 VAASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 471 ~AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
.|+|+|..|+++||. +++.|+|.+.
T Consensus 91 ~AaSaaslIl~ag~~~~R~~~p~s~im 117 (197)
T PRK14512 91 LVASAAALIFLAAKKESRFSLPNARYL 117 (197)
T ss_pred eeHhHHHHHHhcCCcCceeECCCCcEE
Confidence 999999999999986 8999999997
No 207
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=1.6e-09 Score=108.83 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=76.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------HHHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------EEIRRHV 204 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------eeI~~~I 204 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-... |+++... +.+.+.+
T Consensus 7 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK06072 7 REGYAIVTMSRPDKLNA---L-NLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPII 82 (248)
T ss_pred ECCEEEEEECCcccccC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHH
Confidence 57899999964321110 0 1224578999999999999999999987653 4554321 1123344
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEe
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLY 246 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsi 246 (537)
..++..+|||||.++ .|.+||+.++++||.++|.+++.++..
T Consensus 83 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~ 125 (248)
T PRK06072 83 REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTA 125 (248)
T ss_pred HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecc
Confidence 556667999999997 688999999999999999999988753
No 208
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.10 E-value=3.7e-10 Score=110.65 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=85.6
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.++|+|.. .+...+.+.|..+...+..+.|.|.+|||||++.++..|++.|+.+ +.||++.+.|
T Consensus 36 r~I~l~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~--~~~v~t~~~G 102 (207)
T PRK12553 36 RIIFLGGQVDD-----------ASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFI--RPDVQTVCTG 102 (207)
T ss_pred eEEEEcceECH-----------HHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhc--CCCcEEEEEe
Confidence 44899999975 5678899999999877768999999999999999999999999988 7899999999
Q ss_pred hhhHHHHHHHHhcC--eEEEcCCceeeeee
Q 009327 471 VAASGGYYMAMAAG--TILAENLTLTGSIG 498 (537)
Q Consensus 471 ~AasgG~~lA~a~D--~i~A~p~a~~GsIG 498 (537)
.|+|+|..|+++|| .++|.|+|.++...
T Consensus 103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~ 132 (207)
T PRK12553 103 QAASAGAVLLAAGTPGKRFALPNARILIHQ 132 (207)
T ss_pred ehhhHHHHHHHcCCcCcEEECCCchhhhcC
Confidence 99999999999999 59999999998443
No 209
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.10 E-value=1.4e-09 Score=124.44 Aligned_cols=167 Identities=11% Similarity=0.074 Sum_probs=111.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-----------H----
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-----------E---- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-----------e---- 198 (537)
.+.|++|+++-+=.-+. + +.-..++|.+.++++..|+.|++|||+-+.. |+++... .
T Consensus 14 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 89 (715)
T PRK11730 14 EDGIAELVFDAPGSVNK---L-DRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLH 89 (715)
T ss_pred CCCEEEEEEcCCCCCCC---C-CHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHH
Confidence 57899999953211000 0 1224578999999999999999999998763 4444221 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|.+||+-||++||.++|.+.+.+|...+. +|+-+..
T Consensus 90 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~------------lGl~p~~--------- 148 (715)
T PRK11730 90 FANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETK------------LGIMPGF--------- 148 (715)
T ss_pred HHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhh------------cCCCCCc---------
Confidence 122334455567999999998 688999999999999999999999885442 2332110
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+..+ .+. |-+... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 149 g~~~-----------~L~-----------------rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~ 200 (715)
T PRK11730 149 GGTV-----------RLP-----------------RLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALAL 200 (715)
T ss_pred hHHH-----------HHH-----------------HhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHH
Confidence 0000 000 111111 23456789999999999999999999877776665554
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 201 a 201 (715)
T PRK11730 201 L 201 (715)
T ss_pred H
Confidence 4
No 210
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.06 E-value=2.8e-09 Score=111.55 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH---------------HHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV---------------EEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s---------------eeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
.+.+|.+.++++..|++|++|||+-..+ |+++... +.+.+.+..+...+|||||.++ .|
T Consensus 56 ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~A 135 (360)
T TIGR03200 56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMR 135 (360)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 4678999999999999999999998763 3433211 1122344556667999999997 68
Q ss_pred chhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (537)
Q Consensus 222 aSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~ 301 (537)
.+||.-|+++||.++|.+.+.+|...+.. |+.+.. +. ...+...+.
T Consensus 136 iGGGleLALaCDlrIAse~A~Fg~PE~rl------------Gl~P~~---------Gg-----------t~rLprlvG-- 181 (360)
T TIGR03200 136 IGGGQEIGMAADFTIAQDLANFGQAGPKH------------GSAPIG---------GA-----------TDFLPLMIG-- 181 (360)
T ss_pred eeHHHHHHHhCCEEEEcCCCEEeCchhcc------------CCCCCc---------cH-----------HHHHHHhhC--
Confidence 89999999999999999999998754422 222110 00 001111111
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHH
Q 009327 302 YGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 302 y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
.. ...+-++.|+.|++++|++.||||++...+++
T Consensus 182 ---------~~-----rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 182 ---------CE-----QAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred ---------HH-----HHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 01 12344567999999999999999999865544
No 211
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=3.3e-09 Score=105.30 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=105.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH-------H----HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK-------V----EEIRR 202 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~-------s----eeI~~ 202 (537)
++.|++|+++.+ ..+ .+ +.-.++++.+.++++. +++++|||+-+.. |+++.. . ..+.+
T Consensus 10 ~~~v~~itln~~-~~N---al-~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 82 (229)
T PRK06213 10 EDGVATITLDDG-KVN---AL-SPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGST 82 (229)
T ss_pred cCCEEEEEeCCC-CCC---CC-CHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHH
Confidence 568999999753 111 01 1224678888888877 4578999987653 343321 1 11233
Q ss_pred HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC-CeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~-s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
.+.++...+|||||.++ .|.+||+.|+++||.++|.+. +.++...+. +|+.+.
T Consensus 83 l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~------------~Gl~~~------------- 137 (229)
T PRK06213 83 LARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVA------------IGMTMP------------- 137 (229)
T ss_pred HHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhh------------hCCcCC-------------
Confidence 44555567999999997 688999999999999999998 888765432 232110
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v-~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. .....+... +..... +-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 138 ~-------~~~~~l~~~-----------------~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 191 (229)
T PRK06213 138 H-------AAIELARDR-----------------LTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAA 191 (229)
T ss_pred h-------HHHHHHHHH-----------------cCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHH
Confidence 0 000001111 111122 2356899999999999999999998888776665554
No 212
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.04 E-value=3.4e-09 Score=121.29 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=112.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------e 198 (537)
.+.|++|+++-+=.-+. + +.....+|.+.++++..|+.|++|||+-+.+ |+++... +
T Consensus 14 ~~gva~Itlnrp~~~Na---l-~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 89 (714)
T TIGR02437 14 EDGIAELKFDAPGSVNK---F-DRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLL 89 (714)
T ss_pred cCCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHH
Confidence 57899999963210000 0 1234578999999999999999999998754 3443211 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|.+||+-||++||.++|.+.+.+|...+. +|+-+. .
T Consensus 90 ~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~------------lGl~Pg---------~ 148 (714)
T TIGR02437 90 FANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETK------------LGIMPG---------F 148 (714)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhh------------cCCCCC---------c
Confidence 123344556678999999997 688999999999999999999999886442 232210 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+.. ..+...+ |.. ...+-++.|+.+++++|++.||||++...+++.+.+.+.+
T Consensus 149 Ggt-----------~rL~rli---------------G~~-~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a 201 (714)
T TIGR02437 149 GGT-----------VRLPRVI---------------GAD-NALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLL 201 (714)
T ss_pred cHH-----------HHHHHHh---------------CHH-HHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHH
Confidence 000 0000111 111 1245567899999999999999999988777777666555
No 213
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.04 E-value=4.9e-09 Score=105.80 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=99.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------ee 199 (537)
++.|++|.++.+=..+. + +.-.++++.+.++++. ++|++|||..+.. |+++... +.
T Consensus 11 ~~~i~~itlnrp~~~Na---l-~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07112 11 QGDVCFLQLHRPEAQNT---I-NDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEP 84 (255)
T ss_pred eCCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHH
Confidence 56899999964311110 0 1123567888888877 3599999987552 4444321 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.++...+ ++|+-+.. +
T Consensus 85 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p~~---------~ 143 (255)
T PRK07112 85 LYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSEL------------LFGLIPAC---------V 143 (255)
T ss_pred HHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchh------------hhccCcch---------h
Confidence 23345556667999999997 68899999999999999999998887533 22321100 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchH
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd 348 (537)
.+ . +.. .+... ..+-++.|+.++++||++.||||++...++
T Consensus 144 ~~------------~-----------l~~------~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 144 LP------------F-----------LIR------RIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred hH------------H-----------HHH------HhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence 00 0 011 11112 223466799999999999999999986544
No 214
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.3e-09 Score=104.48 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=114.0
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~A 221 (537)
+|.+-++|++.. .+.++.+|.-+..++.-|-|.|-||||||++.+.-.|++.++..| .||-.+. +.|
T Consensus 94 Ii~lg~~Idd~v---------a~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik---~~V~Tic~G~A 161 (275)
T KOG0840|consen 94 IVFLGQPIDDDV---------ANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIK---PDVSTICVGLA 161 (275)
T ss_pred eeeeCCcCcHHH---------HHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhC---CCceeeehhhH
Confidence 578888888764 357777777766666668999999999999999999999999873 4555444 455
Q ss_pred ch-hhhHHhhccC-eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GE-KEYYLACACE-ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aS-gGY~IAsaaD-~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+| |+++||+.+- +.|+-|++.+..+...+.. .. ...+...-.+.+.
T Consensus 162 as~aalLLaaG~KG~R~alPnsriMIhQP~gga----------------------~G----------qa~Di~i~akE~~ 209 (275)
T KOG0840|consen 162 ASMAALLLAAGAKGKRYALPNSRIMIHQPSGGA----------------------GG----------QATDIVIQAKELM 209 (275)
T ss_pred HhHHHHHHhcCCCcceeecCCceeEEeccCCCc----------------------Cc----------cchHHHHHHHHHH
Confidence 55 5556555554 7999999999988654411 00 0111112223344
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHcc-CcccHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g-~v~ta~eAle~GLVD~i~~ 345 (537)
...+...+..++..|.+.+++++-.+- +.++++||+|.||||++..
T Consensus 210 ~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 210 RIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 555566666788999999999887774 5569999999999999973
No 215
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.01 E-value=1.5e-09 Score=105.87 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=83.3
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.+.|+|.. .+...+...|..+..++..+.|.|.+|||||++.++..|++.|+.+ +.||++.+.|
T Consensus 32 rii~i~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~--~~~v~t~~~G 98 (200)
T PRK00277 32 RIIFLGGEVED-----------HMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPDVSTICIG 98 (200)
T ss_pred cEEEECCEECH-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhc--CCCEEEEEEe
Confidence 35889999975 4678899999988887778899999999999999999999999977 7899999999
Q ss_pred hhhHHHHHHHHhcC--eEEEcCCceeee
Q 009327 471 VAASGGYYMAMAAG--TILAENLTLTGS 496 (537)
Q Consensus 471 ~AasgG~~lA~a~D--~i~A~p~a~~Gs 496 (537)
.|+|+|..|+++|+ .+++.|+|.++-
T Consensus 99 ~aaS~a~~I~~ag~~~~r~~~p~s~imi 126 (200)
T PRK00277 99 QAASMGAFLLAAGAKGKRFALPNSRIMI 126 (200)
T ss_pred EeccHHHHHHhcCCCCCEEEcCCceEEe
Confidence 99999999999875 699999999983
No 216
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=99.01 E-value=1.3e-09 Score=104.29 Aligned_cols=91 Identities=25% Similarity=0.298 Sum_probs=81.2
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.. .+...+.+.|..+...+..+.|.|.+|||||++.++..|++.|+.+ +.||++.+.|.
T Consensus 18 ~i~l~g~I~~-----------~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~--~~~v~t~~~G~ 84 (182)
T PF00574_consen 18 IIFLNGPIDE-----------ESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSS--KAPVTTVVLGL 84 (182)
T ss_dssp EEEEESSBSH-----------HHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHS--SSEEEEEEEEE
T ss_pred EEEECCccCH-----------HHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhc--CCCeEEEEeCc
Confidence 4889999975 5678888888888666677899999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
|+|+|..|+++|+. ++|.|+|.|+
T Consensus 85 aaSaa~~i~~ag~~~~R~~~~~s~~m 110 (182)
T PF00574_consen 85 AASAATLIFLAGDKGKRYASPNSRFM 110 (182)
T ss_dssp EETHHHHHHHTSSTTTEEE-TT-EEE
T ss_pred cccceehhhhcCCcCceeeeecCEEE
Confidence 99999999999999 7999999998
No 217
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.00 E-value=5.6e-09 Score=119.37 Aligned_cols=170 Identities=12% Similarity=0.181 Sum_probs=111.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe-CC----CCCCHHHH-------------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EP----LSCGWGKV-------------E 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I-nS----pGG~~~~s-------------e 198 (537)
..+.|++|+++-+-. ... .+ +.-..+++.+.|+++..|++|++|||.- .. -|+++... .
T Consensus 7 ~~~~Va~itlnrp~~-~~N-al-~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (699)
T TIGR02440 7 REDGIAILTIDVPGE-KMN-TL-KAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQ 83 (699)
T ss_pred cCCCEEEEEECCCCC-CCC-CC-CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHH
Confidence 457899999964310 000 00 1224578999999999999999999743 32 24443321 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~--s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
...+.+..+...+|||||.++ .|.+||+-||++||.++|.++ +.+|...+. +|+-+..
T Consensus 84 ~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~------------lGl~p~~------- 144 (699)
T TIGR02440 84 QGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQ------------LGLLPGS------- 144 (699)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhc------------ccCCCCc-------
Confidence 223344556678999999998 688999999999999999876 678875442 2332110
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
+.. ..+. |-+... ..+-++.|+.++++||+++||||++...+++.+.+.
T Consensus 145 --g~~-----------~~L~-----------------r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~ 194 (699)
T TIGR02440 145 --GGT-----------QRLP-----------------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAV 194 (699)
T ss_pred --cHH-----------HHHH-----------------HhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHH
Confidence 000 0000 111111 234467899999999999999999998888888877
Q ss_pred HHhC
Q 009327 355 ERLG 358 (537)
Q Consensus 355 ~~~g 358 (537)
+.+.
T Consensus 195 ~~A~ 198 (699)
T TIGR02440 195 EMAL 198 (699)
T ss_pred HHHH
Confidence 7664
No 218
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.00 E-value=9.4e-09 Score=102.84 Aligned_cols=166 Identities=11% Similarity=0.085 Sum_probs=104.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCce-EEEEEeCC----CCCCHHHH----------H----
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIV-GIYLHIEP----LSCGWGKV----------E---- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~Ik-aIVL~InS----pGG~~~~s----------e---- 198 (537)
.+.|++|.++.+=. +. + +.-.+++|.+.++++.+|++++ +||+.-++ .|+++... .
T Consensus 7 ~~~v~~i~Lnrp~~-Na---l-~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 81 (239)
T PLN02267 7 RGNLFILTLTGDGE-HR---L-NPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVA 81 (239)
T ss_pred cCCEEEEEeCCCCc-Cc---C-CHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHH
Confidence 57899999976411 10 1 1223578999999999999976 55555543 24443211 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecC-CCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPP-SAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p-~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
.+.+.+..+...+|||||.++ .|.+||.-||++||.++|.+ .+.++...+. +|+.+
T Consensus 82 ~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~------------~Gl~~---------- 139 (239)
T PLN02267 82 KLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVD------------IGLPL---------- 139 (239)
T ss_pred HHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccc------------cCCCC----------
Confidence 122234456567999999997 68899999999999999974 5677754321 22210
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHccCcccHHHHHHcCCceeecC-chHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI--ERFINDGVYKVERLKEEGFITNVLY-DDEVISML 353 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v--~~~~~g~v~ta~eAle~GLVD~i~~-~dd~i~~l 353 (537)
|. -....+ . |.+..... +-++.|+.|+++||++.||||++.. .+++.+.+
T Consensus 140 ---p~-------~~~~~l---------------~--~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a 192 (239)
T PLN02267 140 ---PD-------YFMALL---------------R--AKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAA 192 (239)
T ss_pred ---Ch-------HHHHHH---------------H--HHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHH
Confidence 00 000000 0 11111222 3466899999999999999999986 45676666
Q ss_pred HHHh
Q 009327 354 KERL 357 (537)
Q Consensus 354 ~~~~ 357 (537)
.+.+
T Consensus 193 ~~~A 196 (239)
T PLN02267 193 VRLG 196 (239)
T ss_pred HHHH
Confidence 5554
No 219
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.99 E-value=3.1e-09 Score=104.76 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=82.0
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.. .+...+..+|..+...+.-+.|.|.||||||++.++..|+++++.+ +-||.+.+.|.
T Consensus 56 iifl~~~Idd-----------~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~--~~~V~tv~~G~ 122 (221)
T PRK14514 56 IIFLGTQIDD-----------YTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFI--SSDVATICTGM 122 (221)
T ss_pred EEEECCEEcH-----------HHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhc--CCCEEEEEEEE
Confidence 4888999976 5678888888878765556899999999999999999999999988 78999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
|||+|..|+++||. ++|.|+|.+.
T Consensus 123 AAS~AslIl~aG~~gkR~~~pna~iM 148 (221)
T PRK14514 123 AASMASVLLVAGTKGKRSALPHSRVM 148 (221)
T ss_pred ehhHHHHHHhcCCCCceeeCCCCEEE
Confidence 99999999999996 8999999998
No 220
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.99 E-value=2.5e-09 Score=113.87 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=107.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-------HH----HH-
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------EE----IR- 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------ee----I~- 201 (537)
.+.|++|+++-+=.-+. + +.-...+|.+.++.+..|+.|++|||+-.+. |+++... +. +.
T Consensus 18 ~~~v~~ItLnrP~~~Na---l-~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 93 (379)
T PLN02874 18 KGRVRVITLNRPRQLNV---I-SLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYR 93 (379)
T ss_pred ECCEEEEEECCCccccC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHH
Confidence 46788888853211110 0 1224578999999999999999999998653 4544321 01 11
Q ss_pred --HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 202 --RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 202 --~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
..+..+...+|||||.++ .|.+||.-|+++||.++|.+++.++...+. +|+-++ .+
T Consensus 94 ~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~------------iGl~p~---------~g 152 (379)
T PLN02874 94 MYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEAS------------VGFHTD---------CG 152 (379)
T ss_pred HHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccc------------cCcCCC---------hh
Confidence 113345567999999997 688999999999999999999998875332 222211 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
..+ ++..+ -| ....+-++.|+.+++++|++.||||++...+++.+...+...
T Consensus 153 ~~~-----------------------~L~rl---~g--~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~ 204 (379)
T PLN02874 153 FSY-----------------------ILSRL---PG--HLGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLN 204 (379)
T ss_pred HHH-----------------------HHHhh---hH--HHHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHh
Confidence 000 00000 01 012244678999999999999999999988777664334333
No 221
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.98 E-value=3.9e-09 Score=102.18 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=82.4
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.+.|+|.. .....+...|..+..++..+.|.|.+|||||++.++..|++.++.+ +.||.+.+.|
T Consensus 27 riI~l~g~I~~-----------~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~--~~~v~t~~~G 93 (191)
T TIGR00493 27 RIIFLSGEVND-----------SVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFI--KPDVSTICIG 93 (191)
T ss_pred eEEEEccEECh-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEEE
Confidence 45899999975 4567888888888887778899999999999999999999999987 6788888999
Q ss_pred hhhHHHHHHHHhcC--eEEEcCCceeee
Q 009327 471 VAASGGYYMAMAAG--TILAENLTLTGS 496 (537)
Q Consensus 471 ~AasgG~~lA~a~D--~i~A~p~a~~Gs 496 (537)
.|+|+|..|++++| .++|.|+|.++.
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imi 121 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMI 121 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEE
Confidence 99999999999887 499999999984
No 222
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.97 E-value=4.3e-09 Score=105.40 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCcee
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLT 494 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~ 494 (537)
.+.+.++|+... .-+++.|-++||||.+.++..|.+.+++. +.||+++|+++|.|||.+||++||.|+|.|++.+
T Consensus 77 se~v~raI~~~~---~~~~IdLii~TpGG~v~AA~~I~~~l~~~--~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~L 151 (285)
T PF01972_consen 77 SEFVLRAIREAP---KDKPIDLIIHTPGGLVDAAEQIARALREH--PAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVL 151 (285)
T ss_pred HHHHHHHHHhcC---CCCceEEEEECCCCcHHHHHHHHHHHHhC--CCCEEEEECcccccHHHHHHHhCCeEEECCCCcc
Confidence 455666666554 44678888999999999999999999987 8999999999999999999999999999999999
Q ss_pred ee----eecccC
Q 009327 495 GS----IGVVTG 502 (537)
Q Consensus 495 Gs----IGV~~~ 502 (537)
|. +|-.+.
T Consensus 152 GpiDPqi~~~pA 163 (285)
T PF01972_consen 152 GPIDPQIGQYPA 163 (285)
T ss_pred CCCCccccCCCh
Confidence 94 554443
No 223
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.97 E-value=4.2e-09 Score=102.59 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=83.5
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.. ..+..++.+|..+..++..+.|.|.+|||||++.++..|++.++.+ +.||.+.+.|.
T Consensus 32 iifl~~~i~~-----------~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~--~~~V~Tv~~G~ 98 (200)
T CHL00028 32 LLFLGQEVDD-----------EIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFV--KPDVHTICLGL 98 (200)
T ss_pred EEEECCeecH-----------HHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc--CCCEEEEEEEe
Confidence 4889999986 5678899999998876667999999999999999999999999988 88999999999
Q ss_pred hhHHHHHHHHhcC--eEEEcCCceee
Q 009327 472 AASGGYYMAMAAG--TILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D--~i~A~p~a~~G 495 (537)
|+|+|..|+++|| .++|.|+|++.
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~im 124 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVM 124 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEE
Confidence 9999999999999 69999999998
No 224
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.95 E-value=3.7e-09 Score=101.96 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=82.2
Q ss_pred EEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchh
Q 009327 393 IRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVA 472 (537)
Q Consensus 393 I~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~A 472 (537)
|.+.|+|.. .++..++.+|..+...+..+-|.|.+|||||++.+...||+.++.. +.||.+.+-|.|
T Consensus 30 I~l~g~I~~-----------~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i--k~~V~ti~~G~A 96 (200)
T COG0740 30 IFLGGEIED-----------HMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPPVSTICMGQA 96 (200)
T ss_pred EEEeeeech-----------HHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhc--CCCeEEEEecHH
Confidence 999999975 3566788888888888888999999999999999999999999988 999999999999
Q ss_pred hHHHHHHHHhcCeE--EEcCCceee
Q 009327 473 ASGGYYMAMAAGTI--LAENLTLTG 495 (537)
Q Consensus 473 asgG~~lA~a~D~i--~A~p~a~~G 495 (537)
||+|..|+++++.- ++.|+|++=
T Consensus 97 aSmgs~l~~aG~~g~r~~lPnsrim 121 (200)
T COG0740 97 ASMGSVLLMAGDKGKRFALPNARIM 121 (200)
T ss_pred HhHHHHHHhcCCCCCceeCCCceEE
Confidence 99999999999986 999999985
No 225
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.94 E-value=1.3e-08 Score=116.55 Aligned_cols=168 Identities=11% Similarity=0.153 Sum_probs=112.1
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCC-----CCCCHHHH---------H--
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV---------E-- 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-----pGG~~~~s---------e-- 198 (537)
..+.|++|+++-+= +..+ +.-..+++.+.++++..|++|++|||.-.. -|+++... .
T Consensus 12 ~~~~va~itlnrp~-----~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (708)
T PRK11154 12 REDNIAVITIDVPG-----EKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEAL 86 (708)
T ss_pred cCCCEEEEEECCCC-----CCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHH
Confidence 35789999996430 0111 122467899999999999999999998643 24443211 1
Q ss_pred --HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCC--eeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 199 --EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSA--YFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 199 --eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s--~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
...+.+..+...+|||||.++ .|.+||+-||++||.++|.+++ .+|...+. +|+.+..
T Consensus 87 ~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~------------lGl~p~~----- 149 (708)
T PRK11154 87 ARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQ------------LGLLPGS----- 149 (708)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCcccc------------CCCCCCc-----
Confidence 122344556668999999997 6889999999999999999864 78875442 2332210
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISM 352 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~ 352 (537)
+.. ..+. |-+... ..+-+++|+.++++||+++||||++...+++.+.
T Consensus 150 ----gg~-----------~~L~-----------------r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 197 (708)
T PRK11154 150 ----GGT-----------QRLP-----------------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEV 197 (708)
T ss_pred ----cHH-----------hHHH-----------------hhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHH
Confidence 000 0000 111111 2345678999999999999999999988888777
Q ss_pred HHHHhC
Q 009327 353 LKERLG 358 (537)
Q Consensus 353 l~~~~g 358 (537)
+.+.+.
T Consensus 198 a~~~A~ 203 (708)
T PRK11154 198 AVELAK 203 (708)
T ss_pred HHHHHH
Confidence 776664
No 226
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.94 E-value=6.3e-09 Score=101.01 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=82.4
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|++.. .....++..|..+..++..+.|.|.+|||||++.++..|+++++.+ +.||++.+.|.
T Consensus 27 iifl~~~i~~-----------~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~--~~~V~t~~~G~ 93 (196)
T PRK12551 27 IIFLGEPVTS-----------DSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHV--KPDVHTVCVGL 93 (196)
T ss_pred EEEECCeecH-----------HHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc--CCCEEEEEEEE
Confidence 3888888876 5678899999988876667999999999999999999999999988 78999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
|+|+|..|+++||. ++|.|+|++.
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iM 119 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIM 119 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEE
Confidence 99999999999986 8899999998
No 227
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.92 E-value=5.5e-09 Score=111.72 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=103.5
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------------E 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se------------e 199 (537)
.+.|++|+++ .+...+ +.-...+|.++|+.+..|+.|++|||+..+. ||++.... .
T Consensus 44 ~g~v~~ItLN------RP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 117 (401)
T PLN02157 44 SGCSRTAILN------RPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIRE 117 (401)
T ss_pred ECCEEEEEEC------CCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 4567888873 322211 1123567888999999999999999998763 56553211 1
Q ss_pred H----HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 200 I----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 200 I----~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
. ++.+..+...+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+-++
T Consensus 118 ~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~------------iGl~Pd------- 178 (401)
T PLN02157 118 FFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETI------------IGFHPD------- 178 (401)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhh------------cCCCCC-------
Confidence 1 1123345567999999997 688999999999999999999999875332 222211
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
.+..+ |+..+- | ....+-+++|+.++++||++.||||++...+++
T Consensus 179 --~G~s~-----------------------~L~rl~---G--~~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l 223 (401)
T PLN02157 179 --AGASF-----------------------NLSHLP---G--RLGEYLGLTGLKLSGAEMLACGLATHYIRSEEI 223 (401)
T ss_pred --ccHHH-----------------------HHHHhh---h--HHHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence 00000 111110 1 112344578999999999999999999877665
No 228
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.89 E-value=8.7e-09 Score=109.67 Aligned_cols=167 Identities=11% Similarity=0.084 Sum_probs=109.5
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------------E 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se------------e 199 (537)
.+.|++|+++-+ ...+ +.-.+.+|.++|+++..|++|++|||+-.+. ||++.... .
T Consensus 16 ~~~i~~ItLnRP------~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~ 89 (381)
T PLN02988 16 KSSVRILTLNRP------KQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN 89 (381)
T ss_pred ECCEEEEEECCC------CccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence 567888888532 2111 1123578999999999999999999998763 55553211 1
Q ss_pred -HH---HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 200 -IR---RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 200 -I~---~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
.+ .....+...+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+-++
T Consensus 90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~------------iGl~Pd------- 150 (381)
T PLN02988 90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETA------------LGLFPD------- 150 (381)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhh------------cCcCCC-------
Confidence 11 112234457999999997 688999999999999999999998874331 122111
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+..+ |+..+--.+ ...-.++|+.+++++|++.||||++...+++.+.+.
T Consensus 151 --~G~s~-----------------------~L~rl~G~~-----~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~ 200 (381)
T PLN02988 151 --VGASY-----------------------FLSRLPGFF-----GEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEA 200 (381)
T ss_pred --ccHHH-----------------------HHHHHHHHH-----HHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHH
Confidence 00111 111110000 123456899999999999999999998777776665
Q ss_pred HHhCC
Q 009327 355 ERLGV 359 (537)
Q Consensus 355 ~~~g~ 359 (537)
+.+.+
T Consensus 201 ~la~~ 205 (381)
T PLN02988 201 DLCRI 205 (381)
T ss_pred HHHHh
Confidence 55543
No 229
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.84 E-value=5e-08 Score=112.14 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=100.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEE-EeCCC----CCCHHHH-------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYL-HIEPL----SCGWGKV-------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL-~InSp----GG~~~~s-------------ee 199 (537)
++.|++|+++.+=... . .+ +....++|.+.++++..|+.|++||| .-... |+++... ..
T Consensus 20 ~~gVa~itlnrP~~~~-N-al-~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 96 (737)
T TIGR02441 20 KGDVAVVKIDSPNSKV-N-TL-SKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQE 96 (737)
T ss_pred ECCEEEEEEcCCCCCC-C-CC-CHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHH
Confidence 5789999996431000 0 00 12245789999999999999998754 54431 3443211 12
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~--s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+..+...+|||||.++ .|.+||+-||++||.++|.++ +.+|...+. +|+-+.
T Consensus 97 ~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~------------lGl~Pg--------- 155 (737)
T TIGR02441 97 GQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVM------------LGLLPG--------- 155 (737)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhh------------hCCCCC---------
Confidence 23344556567999999997 688999999999999999987 478875442 222210
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
.+-.+ .+.. .-|.. ...+-+++|+.+++++|++.||||++...
T Consensus 156 ~Ggt~-----------rLpr---------------liG~~-~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 156 AGGTQ-----------RLPK---------------LTGVP-AALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred ccHhh-----------hHHH---------------hhCHH-HHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 00000 0000 01111 13445678999999999999999999865
No 230
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.84 E-value=2.1e-08 Score=97.59 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=81.9
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.++|.+ ..+..++..|..+..++.-+.|.|.||||||++.++-.|++.++.+ +-||.+.+.|.
T Consensus 29 iifl~~~i~~-----------~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~--~~~V~Ti~~G~ 95 (201)
T PRK14513 29 IIFVGTPIES-----------QMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYI--KAPVSTICVGI 95 (201)
T ss_pred EEEECCEEcH-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhc--CCCEEEEEEee
Confidence 3778888876 5678888888888876667899999999999999999999999988 78999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
|+|+|..|+++||. ++|.|+|++-
T Consensus 96 AaS~As~il~aG~kgkR~~~pna~iM 121 (201)
T PRK14513 96 AMSMGSVLLMAGDKGKRMALPNSRIM 121 (201)
T ss_pred ehhhHHHHHhcCCCCcEEecCCeEEE
Confidence 99999999999997 8999999996
No 231
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.80 E-value=3.1e-08 Score=106.05 Aligned_cols=157 Identities=11% Similarity=0.045 Sum_probs=101.9
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------HH---
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------EE--- 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------ee--- 199 (537)
.+.+++|+++- +...+ +.-...+|.+.|+.+..|++|++|||+.++. ||++... +.
T Consensus 49 ~~~~~~ItLNR------P~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 122 (407)
T PLN02851 49 RAKSRAAILNR------PSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKL 122 (407)
T ss_pred ECCEEEEEECC------CCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 35677777743 22111 1224678999999999999999999998752 5554322 11
Q ss_pred ----HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 200 ----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 200 ----I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
+++....+...+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+.++
T Consensus 123 ~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~------------iGl~Pd------- 183 (407)
T PLN02851 123 FFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQ------------MGFHPD------- 183 (407)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhc------------cCCCCC-------
Confidence 12223334456899999997 688999999999999999999998875332 222211
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
.+..+ |+..+- |. ....-.++|..+++++|++.||+|.+...+++
T Consensus 184 --vG~s~-----------------------~L~rl~---g~--~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 184 --AGASY-----------------------YLSRLP---GY--LGEYLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred --ccHHH-----------------------HHHHhc---CH--HHHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 00000 111110 10 12234568999999999999999999876655
No 232
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.73 E-value=4e-08 Score=94.85 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=111.8
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-----------------H-------
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-----------------W------- 194 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~-----------------~------- 194 (537)
+.|+.|.++-+=+.+.- ...+..++.+++..|+.|++|-.|+|..++-|+- .
T Consensus 27 ~giakItinRPevrNAf----rP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r 102 (282)
T COG0447 27 DGIAKITINRPEVRNAF----RPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR 102 (282)
T ss_pred CceEEEEecChhhhccC----CCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc
Confidence 57888888544333211 2357889999999999999999999997743211 1
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 195 GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 195 ~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
...-++.+.|+. .+|||||+++ .|.+||-.+-..||.-+|+.++.+|-.|.-..+++-
T Consensus 103 LnvLdlQrlIR~---~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~------------------ 161 (282)
T COG0447 103 LNVLDLQRLIRT---MPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDG------------------ 161 (282)
T ss_pred cchhhHHHHHHh---CCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccC------------------
Confidence 122455565654 5999999997 688999999999999999999999988765433320
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHccCcccHHHHHHcCCceeecCchHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISM 352 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~-~~~g~v~ta~eAle~GLVD~i~~~dd~i~~ 352 (537)
..+..+ |-.+ | |. ...++ ++-++.|+++||++.|||+.+...+++.++
T Consensus 162 --G~Gs~y----------------lar~-------V----Gq--KkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e 210 (282)
T COG0447 162 --GYGSSY----------------LARI-------V----GQ--KKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKE 210 (282)
T ss_pred --cccHHH----------------HHHH-------h----hh--hhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHH
Confidence 001111 1111 1 11 12333 456999999999999999999998876655
Q ss_pred HHHHh
Q 009327 353 LKERL 357 (537)
Q Consensus 353 l~~~~ 357 (537)
..+.+
T Consensus 211 ~v~W~ 215 (282)
T COG0447 211 TVQWA 215 (282)
T ss_pred HHHHH
Confidence 44443
No 233
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.72 E-value=2.2e-08 Score=95.70 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=93.1
Q ss_pred CCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCC-----------CchHH--
Q 009327 385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPG-----------GDALA-- 447 (537)
Q Consensus 385 ~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpG-----------G~~~~-- 447 (537)
.+.+.|--|+++.|-.. |..+-.|..+|.+.|..-.++.++|+|||.. .|.| -+..+
T Consensus 37 ~~~~gvR~i~l~npKk~------NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haev 110 (287)
T KOG1682|consen 37 KEHNGVREITLNNPKKL------NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEV 110 (287)
T ss_pred ccccceeeeeecCcccc------chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHH
Confidence 34578888999998765 6677788899999998888888999999963 3433 22222
Q ss_pred ---HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHh
Q 009327 448 ---SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKI 513 (537)
Q Consensus 448 ---s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~ 513 (537)
...+..-|+++ +.|||+-|||+|+.+|+.|..+||+++|+.++.|- .+|++...+++. |.+.+
T Consensus 111 Fqtc~dvmn~Irn~--pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRav 180 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNL--PVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAV 180 (287)
T ss_pred HHHHHHHHHHHhcC--CCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-Hhhhc
Confidence 12334445555 99999999999999999999999999999999996 699999888776 44433
No 234
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.53 E-value=1.4e-07 Score=97.16 Aligned_cols=117 Identities=19% Similarity=0.136 Sum_probs=95.0
Q ss_pred CCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH----------
Q 009327 385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD---------- 449 (537)
Q Consensus 385 ~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~---------- 449 (537)
.+++...+|++|+|-.- ||.+-.|...+.-.|.+.+.++.+++|||.. .|.|||+....
T Consensus 43 e~~~~~r~itLNRPKaL------NAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 43 EGKGCARVITLNRPKAL------NALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred ecCCceeEEEecCchhh------ccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 35678999999999875 8888889999999999999999999999964 47899865421
Q ss_pred ------HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHH
Q 009327 450 ------LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLG 507 (537)
Q Consensus 450 ------~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~ 507 (537)
..|..+..+.. .||.||.|+|.-+|||..|++.+-++||++.|.|. .||.+|..+...
T Consensus 117 ~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy 185 (401)
T KOG1684|consen 117 VKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASY 185 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCcccee
Confidence 11222222222 79999999999999999999999999999999998 599999776544
No 235
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=98.53 E-value=5.4e-07 Score=88.86 Aligned_cols=101 Identities=11% Similarity=0.022 Sum_probs=81.9
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCc---------hHHHHHHHHHHHHhcCCC
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD---------ALASDLMWREIRLLSESK 462 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~---------~~~s~~i~~~i~~~~~~k 462 (537)
+|.+.++|.+.+.. +...+-..++.++.+|-.+..++..+-|-|.||||||+ +.++..|+++++.+ +-
T Consensus 32 ii~l~~~i~~~~~~-~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~i--k~ 108 (222)
T PRK12552 32 IVYLGLPLFSDDDA-KRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYI--KP 108 (222)
T ss_pred EEEECCeecccccc-ccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhc--CC
Confidence 48899999763111 11122235778888888888777779999999999987 56678999999988 77
Q ss_pred CEEEEECchhhHHHHHHHHhcCe--EEEcCCceee
Q 009327 463 PVIASMSDVAASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 463 PVIA~v~G~AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
||.+.+.|.|+|+|..|+++||+ ++|.|+|++-
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iM 143 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIV 143 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEE
Confidence 89999999999999999999997 8999999986
No 236
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.33 E-value=6.6e-07 Score=86.42 Aligned_cols=86 Identities=21% Similarity=0.194 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCC--CC---H--------H----HHHHHHHHHHHhhhcCCeEEEEecC-cchh
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLS--CG---W--------G----KVEEIRRHVVDFKKSGKFIIGYVPV-CGEK 224 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpG--G~---~--------~----~seeI~~~I~~lr~s~KpVva~v~~-AaSg 224 (537)
..+++.+.+++.++|++++.|+||--.|| |. + . -...|+..+......+.||||.++. |-+|
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 46788999999999999999999999997 21 1 0 1134555555555668999999985 6699
Q ss_pred hhHHhhccCeeEecCCCeeEEecc
Q 009327 225 EYYLACACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 225 GY~IAsaaD~I~a~p~s~iGsiGv 248 (537)
|.-+|.+||..++..++.+|++..
T Consensus 139 GLElALACDiRva~s~akmGLvET 162 (291)
T KOG1679|consen 139 GLELALACDIRVAASSAKMGLVET 162 (291)
T ss_pred chhhhhhccceehhhhcccccccc
Confidence 999999999999999999988743
No 237
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.33 E-value=1.8e-06 Score=84.27 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=104.9
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCC-------------------CCCC-H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEP-------------------LSCG-W 194 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-------------------pGG~-~ 194 (537)
.++.|..+.++ .+..++ +..-..++.+.+.....||++++|||...+ +.|. +
T Consensus 28 ~~~~V~hv~ln------RPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~ 101 (292)
T KOG1681|consen 28 AQPFVYHVQLN------RPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDV 101 (292)
T ss_pred CCCeEEEEEec------CcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchH
Confidence 45677777773 333222 112245899999999999999999995443 2111 1
Q ss_pred -HHHHHHHHHHHHhh-------hcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEe----cccccccchhhHhhh
Q 009327 195 -GKVEEIRRHVVDFK-------KSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLY----GLTVQASFLGGVLEK 261 (537)
Q Consensus 195 -~~seeI~~~I~~lr-------~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsi----Gv~~~~~~~~~ll~k 261 (537)
-..+.+++.|+.++ ..+||||+.++ .|.+||.=|.++||..|++..+.+..- |+.+....+
T Consensus 102 aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL------ 175 (292)
T KOG1681|consen 102 ARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTL------ 175 (292)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhH------
Confidence 22355666666554 46999999997 688999999999999999999987653 332211111
Q ss_pred cCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHccCcccHHHHHHcCCc
Q 009327 262 VGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFI 340 (537)
Q Consensus 262 ~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~-~~~g~v~ta~eAle~GLV 340 (537)
+.++..+.+ ...+++ -++++-|++.||++.|||
T Consensus 176 ------------------------------~RlpkvVGn----------------~s~~~elafTar~f~a~EAl~~GLv 209 (292)
T KOG1681|consen 176 ------------------------------NRLPKVVGN----------------QSLARELAFTARKFSADEALDSGLV 209 (292)
T ss_pred ------------------------------hhhhHHhcc----------------hHHHHHHHhhhhhcchhhhhhcCcc
Confidence 122222221 012222 356889999999999999
Q ss_pred eeec-CchHHHHHHHH
Q 009327 341 TNVL-YDDEVISMLKE 355 (537)
Q Consensus 341 D~i~-~~dd~i~~l~~ 355 (537)
-++- +.+++++.+..
T Consensus 210 Srvf~dk~~ll~~~l~ 225 (292)
T KOG1681|consen 210 SRVFPDKEELLNGALP 225 (292)
T ss_pred hhhcCCHHHHHhhhHH
Confidence 9994 45666665433
No 238
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=98.28 E-value=2.7e-06 Score=84.56 Aligned_cols=126 Identities=11% Similarity=0.036 Sum_probs=95.6
Q ss_pred CCCcEEEEEEe-cccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH------------H
Q 009327 386 GGDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA------------S 448 (537)
Q Consensus 386 ~~~~VavI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~------------s 448 (537)
+++++..|.++ +|-.. |+....+..++.++|.++.+|+++..+++.. .|.|.+... +
T Consensus 13 ~~~g~~~I~~~~~Pkk~------Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~ 86 (266)
T KOG0016|consen 13 RENGPFFIALNIRPKKK------NALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEES 86 (266)
T ss_pred ecCCcEEEEecCCCccc------ccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccc
Confidence 56788888888 77654 7788889999999999999999887777743 244444322 1
Q ss_pred HHHHHH-------HHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWRE-------IRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~-------i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
...... +..+ .-+||+||.|||.|.|-|..|.--||.+||++.+.|- .+|..|......-+..++|..
T Consensus 87 ~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~ 166 (266)
T KOG0016|consen 87 DKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSA 166 (266)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchh
Confidence 222111 2222 2299999999999999999999999999999998886 699999888877787888765
Q ss_pred e
Q 009327 517 K 517 (537)
Q Consensus 517 ~ 517 (537)
.
T Consensus 167 ~ 167 (266)
T KOG0016|consen 167 S 167 (266)
T ss_pred h
Confidence 3
No 239
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=98.26 E-value=0.00024 Score=79.36 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH----------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhh
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG----------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLAC 230 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~----------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAs 230 (537)
.+.+.+.+.++.|.+.. + =||.-+||+|+... +.-.|...+.+++..+.|.|+++ +.|++||.|+.+
T Consensus 148 ~~~~Ki~r~~elA~~~~-l-PlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a 225 (569)
T PLN02820 148 ITVKKHLRAQEIAAQCR-L-PCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPA 225 (569)
T ss_pred HHHHHHHHHHHHHHHcC-C-CEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHH
Confidence 35677888888887654 3 36777899886542 12234455555655678999987 468888888889
Q ss_pred ccCeeEec-CCCeeEEecc
Q 009327 231 ACEELYAP-PSAYFSLYGL 248 (537)
Q Consensus 231 aaD~I~a~-p~s~iGsiGv 248 (537)
.||.++|. +++.++..|.
T Consensus 226 ~~D~vim~~~~a~i~~aGP 244 (569)
T PLN02820 226 MADESVIVKGNGTIFLAGP 244 (569)
T ss_pred hCCceEEecCCcEEEecCH
Confidence 99987765 5677887765
No 240
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=98.20 E-value=0.00055 Score=75.92 Aligned_cols=84 Identities=10% Similarity=-0.037 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD 233 (537)
...+.+++.++.|.++. + -+|.-++|.|+... +...+......+ ....|+|+.+ +.|..|+.|..+.||
T Consensus 101 ~~~~K~~r~~e~A~~~~-l-PlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~-s~~iP~Isvv~G~~~GG~a~~~al~D 177 (512)
T TIGR01117 101 MHAAKIVKIMDLAMKMG-A-PVVGLNDSGGARIQEAVDALKGYGDIFYRNTIA-SGVVPQISAIMGPCAGGAVYSPALTD 177 (512)
T ss_pred HHHHHHHHHHHHHHHcC-C-CEEEEecCCCCCccccchhhhhHHHHHHHHHHH-cCCCcEEEEEecCCCcHHHHHHHhcC
Confidence 45778888888888764 3 47777888886531 112233222222 2457999887 567777777777999
Q ss_pred eeEecCCC-eeEEecc
Q 009327 234 ELYAPPSA-YFSLYGL 248 (537)
Q Consensus 234 ~I~a~p~s-~iGsiGv 248 (537)
.++|.+.+ .++..|.
T Consensus 178 ~vim~~~~a~i~~aGP 193 (512)
T TIGR01117 178 FIYMVDNTSQMFITGP 193 (512)
T ss_pred ceEEeccceEEEecCh
Confidence 99999964 5777664
No 241
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=98.14 E-value=0.00037 Score=77.00 Aligned_cols=267 Identities=16% Similarity=0.158 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCC--C-------HHHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSC--G-------WGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA 231 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG--~-------~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsa 231 (537)
...+.+...++.|.++ ++- +|.-++|.|+ . +.+.-.+...+.+++. +.|+|+++. .|..+|-|++..
T Consensus 76 ~~~~Ki~ra~~~A~~~-~~P-~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~ 152 (493)
T PF01039_consen 76 VHGEKIARAIELALEN-GLP-LVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSG-GIPQISVVTGPCTGGGAYLAAL 152 (493)
T ss_dssp HHHHHHHHHHHHHHHH-TEE-EEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHT-TS-EEEEEESEEEGGGGHHHHH
T ss_pred ccceeeehHHHHHHHc-CCC-cEEeccccccccccchhhhhhhhhHHHHHHHHHHhc-CCCeEEEEccccccchhhcccc
Confidence 4466788888888876 344 4455788887 2 1334466777777766 999999884 677777888889
Q ss_pred cCeeEecCC-CeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009327 232 CEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVS 310 (537)
Q Consensus 232 aD~I~a~p~-s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va 310 (537)
||.++|.+. +.++..|... ++. ..++ ..+.+
T Consensus 153 ~d~~i~~~~~a~i~l~GP~v--------v~~--------------~~Ge-----~~~~~--------------------- 184 (493)
T PF01039_consen 153 SDFVIMVKGTARIFLAGPRV--------VES--------------ATGE-----EVDSE--------------------- 184 (493)
T ss_dssp SSEEEEETTTCEEESSTHHH--------HHH--------------HHSS-----CTSHH---------------------
T ss_pred cCccccCccceEEEeccccc--------ccc--------------ccCc-----cccch---------------------
Confidence 999999887 8887776532 110 0001 11111
Q ss_pred HhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc-hHHHHHHHHHhCCCC---CC---CCCeee------c----ccc
Q 009327 311 STKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD-DEVISMLKERLGVQK---DK---NLPMVD------Y----RKY 373 (537)
Q Consensus 311 ~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~-dd~i~~l~~~~g~~~---~~---~~~~v~------y----~~y 373 (537)
++ . |. -..+.+.|.+|.+... +++++.+++.+..=+ .. ..+... + ...
T Consensus 185 --------~l---g-G~---~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~~~l~~~ 249 (493)
T PF01039_consen 185 --------EL---G-GA---DVHAAKSGVVDYVVDDEEDALAQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRDEELDSI 249 (493)
T ss_dssp --------HH---H-BH---HHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSCGGGHGC
T ss_pred --------hh---h-hh---hhhcccCCCceEEEechHHHHHHHHHhhcccccccccccCCCcccccCCCcccccccccc
Confidence 10 0 10 0125688999999854 466777777754311 11 111111 1 011
Q ss_pred ccc-ccccc------------------cc-cCCCCcEEEEEEecccc----cCCCCCCCCCccchHHHHHHHHHHHHhcC
Q 009327 374 SGV-RRWTL------------------GL-TGGGDQIAVIRASGSIS----RVRSPLSLSSSGIIGEQLIEKIRKVRESK 429 (537)
Q Consensus 374 ~~~-~~~~~------------------~~-~~~~~~VavI~i~G~I~----~~~~~~~~~~~~~~~~~l~~~l~~~~~d~ 429 (537)
.+. .+.++ +- .+..=-++.-+|+|.-+ ...............+...+.++.+.. -
T Consensus 250 ~P~~~~~~yD~r~ii~~i~D~~~f~E~~~~~g~~~vtg~arl~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~ 328 (493)
T PF01039_consen 250 IPDDRRRPYDMRDIIARIVDDGSFFELKPGYGKNIVTGFARLGGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-F 328 (493)
T ss_dssp S-SSTTS---HHHHHHHHSGGGBEEEESTTSSTTEEEEEEEETTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-T
T ss_pred cccccCCCCCcceeeEecccCCCceeccccccCCeEEeeeeeCCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-h
Confidence 111 00000 00 01111234444444322 100000001223345666777776665 3
Q ss_pred CCCeEEEEeCCCCCc----------hHHHHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhc----CeEEEcCCceee
Q 009327 430 RYKAAIIRIDSPGGD----------ALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAA----GTILAENLTLTG 495 (537)
Q Consensus 430 ~vraVVL~i~SpGG~----------~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~----D~i~A~p~a~~G 495 (537)
++ .||.-+|+||=. +.....+..++..+ ..|+|..|-|-+.|||++..+++ |+++|-|++.+|
T Consensus 329 ~i-Plv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~--~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~ 405 (493)
T PF01039_consen 329 NI-PLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEA--TVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG 405 (493)
T ss_dssp T---EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH---S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE
T ss_pred CC-ceEEEeecccccccchhhhcchHHHHHHHHHHHHcC--CCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee
Confidence 55 555556877632 22223344444444 89999999999999988777766 899999999987
Q ss_pred eee
Q 009327 496 SIG 498 (537)
Q Consensus 496 sIG 498 (537)
.++
T Consensus 406 vm~ 408 (493)
T PF01039_consen 406 VMG 408 (493)
T ss_dssp SS-
T ss_pred ecC
Confidence 654
No 242
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.4e-05 Score=76.60 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=80.5
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.++|++ ...+.++.+|--+..++.-|-|.|.+|||||++.++-.||+.++-+ +-||-..+-|.
T Consensus 94 Ii~lg~~Idd-----------~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~i--k~~V~Tic~G~ 160 (275)
T KOG0840|consen 94 IVFLGQPIDD-----------DVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI--KPDVSTICVGL 160 (275)
T ss_pred eeeeCCcCcH-----------HHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhh--CCCceeeehhh
Confidence 4888999976 5677888888888888888999999999999999999999999988 67888888899
Q ss_pred hhHHHHHHHHhc--CeEEEcCCceee
Q 009327 472 AASGGYYMAMAA--GTILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~--D~i~A~p~a~~G 495 (537)
|+|.|..|.+++ -.++|-|++++-
T Consensus 161 Aas~aalLLaaG~KG~R~alPnsriM 186 (275)
T KOG0840|consen 161 AASMAALLLAAGAKGKRYALPNSRIM 186 (275)
T ss_pred HHhHHHHHHhcCCCcceeecCCceeE
Confidence 999999998888 569999999985
No 243
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.86 E-value=0.00012 Score=70.57 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=108.9
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHH---HHHHHHHHHhcCCCceEEEEEeCCCC--------------CCHHHH---H
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLP---QICENFVKAAYDPRIVGIYLHIEPLS--------------CGWGKV---E 198 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~---~l~~~L~~A~~D~~IkaIVL~InSpG--------------G~~~~s---e 198 (537)
+.|-.|.++-+=. -+.+++. .+.+.|.+-+++.+++.|||.-+++- |+-.++ +
T Consensus 40 ~gvR~i~l~npKk-------~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFq 112 (287)
T KOG1682|consen 40 NGVREITLNNPKK-------LNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQ 112 (287)
T ss_pred cceeeeeecCccc-------cchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHH
Confidence 5566666632211 1334544 45556666666678999999887762 222222 2
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
...+.+..+|..+.||++.++ .|+.+|+.+-..||.+++..++.+...|... |+ |=+
T Consensus 113 tc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~v------------Gl---------FCS- 170 (287)
T KOG1682|consen 113 TCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGV------------GL---------FCS- 170 (287)
T ss_pred HHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCce------------ee---------Eec-
Confidence 344556666677999999997 6889999999999999999998887765532 11 000
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
.| .||-.|-++.. ..+.+++|.+.++++|+-.|||.++...+|+..++.+.
T Consensus 171 -TP---------------------------GvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i 222 (287)
T KOG1682|consen 171 -TP---------------------------GVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEI 222 (287)
T ss_pred -Cc---------------------------chhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHH
Confidence 11 15555655544 34566889999999999999999999888876665544
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
.
T Consensus 223 ~ 223 (287)
T KOG1682|consen 223 T 223 (287)
T ss_pred H
Confidence 3
No 244
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.69 E-value=0.00038 Score=71.81 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=71.1
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcC---CCCeEEEEeCCCCCchHHH-------HHHHHHHHHh
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESK---RYKAAIIRIDSPGGDALAS-------DLMWREIRLL 458 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~---~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~ 458 (537)
.|+++-.++....+ ..+......+..+++.+.++. ....+|+-++|+|+....+ ..+...+..+
T Consensus 69 ~v~v~a~D~tf~GG------S~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~l 142 (301)
T PRK07189 69 PVVVAAQEGRFMGG------SVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDL 142 (301)
T ss_pred EEEEEEECCCccCc------CcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHH
Confidence 45555555554321 223456778888888887654 1246777788988875432 2344455555
Q ss_pred cCCCCEEEEECch--hhHHHHHHHHhcCeEEEcCCceee
Q 009327 459 SESKPVIASMSDV--AASGGYYMAMAAGTILAENLTLTG 495 (537)
Q Consensus 459 ~~~kPVIA~v~G~--AasgG~~lA~a~D~i~A~p~a~~G 495 (537)
+...|+|+.+.|. |+||+.+++.+||+++|++.+.+|
T Consensus 143 s~~VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~ig 181 (301)
T PRK07189 143 RAAVPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLG 181 (301)
T ss_pred hCCCCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEe
Confidence 4469999999999 999999999999999999997776
No 245
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.66 E-value=0.00048 Score=70.30 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=71.2
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCC--C-CeEEEEeCCCCCchHHH-------HHHHHHHHHh
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR--Y-KAAIIRIDSPGGDALAS-------DLMWREIRLL 458 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~--v-raVVL~i~SpGG~~~~s-------~~i~~~i~~~ 458 (537)
.|+++-.++....+ ..+....+.+.++++.+.+|.. . -.+|+-++|+|+....+ ..++..+..+
T Consensus 60 ~v~v~a~D~t~~GG------S~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~l 133 (274)
T TIGR03133 60 PVVVAAQEGRFQGG------SVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDA 133 (274)
T ss_pred EEEEEEECCCccCc------CCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHH
Confidence 55666666555431 2233556888898888876322 1 26777889988876442 2344444445
Q ss_pred cCCCCEEEEECch--hhHHHHHHHHhcCeEEEcCCceee
Q 009327 459 SESKPVIASMSDV--AASGGYYMAMAAGTILAENLTLTG 495 (537)
Q Consensus 459 ~~~kPVIA~v~G~--AasgG~~lA~a~D~i~A~p~a~~G 495 (537)
+...|+|+.+.|. |+||+.++++.||+++|++.+.++
T Consensus 134 s~~vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~ 172 (274)
T TIGR03133 134 RAAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLG 172 (274)
T ss_pred hCCCCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEe
Confidence 4459999999999 899999999999999999997776
No 246
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.49 E-value=0.0014 Score=66.00 Aligned_cols=198 Identities=14% Similarity=0.122 Sum_probs=122.0
Q ss_pred chhhhhhcccccccCCccCCCCCCCCCccccChhhHHHHHHHHHHHhcCCcccccCCeEEEEEEeeeeccCcc------c
Q 009327 83 PQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLK------S 156 (537)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~y~~~~~~~~~~~~~~~~~~~~~~VavI~l~G~I~~~~~------~ 156 (537)
-.+..+.+.+|+|..-.+.+. .-++|..-..|...+... .....-.=+||.-.|.|....- .
T Consensus 64 Ri~~llD~gsf~el~~~l~~~----dPL~F~d~k~Y~~rL~~a--------~~~tg~~davvtg~g~i~G~pvv~av~df 131 (294)
T COG0777 64 RLEALLDEGSFEELDSPLEPK----DPLKFPDSKKYKDRLEAA--------RKKTGLDDAVVTGEGTINGLPVVLAVMDF 131 (294)
T ss_pred HHHHhhCCCcceecccCCCcC----CcccCCcchhhHHHHHHH--------HhhcCCCcceEEEeeEECCeEEEEEEEec
Confidence 334444555666654433332 234666644555433211 1111223366677777765421 1
Q ss_pred ccC----CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCC-------CHHHHHHHHHHHHHhhhcCCeEEEEecCcchhh
Q 009327 157 RFS----SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSC-------GWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKE 225 (537)
Q Consensus 157 ~~~----~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG-------~~~~seeI~~~I~~lr~s~KpVva~v~~AaSgG 225 (537)
.|- +.+..+.|++++++|.++. .-.|++ --|.|- ++.+.-.+..+|.++++++.|+|++...-..||
T Consensus 132 ~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f-~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGG 209 (294)
T COG0777 132 AFMGGSMGSVVGEKITRAIERAIEDK-LPLVLF-SASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGG 209 (294)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhC-CCEEEE-ecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccc
Confidence 221 2345779999999999875 444444 333331 345667788899999999999999995433444
Q ss_pred hH--HhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHH
Q 009327 226 YY--LACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYG 303 (537)
Q Consensus 226 Y~--IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~ 303 (537)
.- .|+.+|.|+|.|.+.||..|....-..+ +.++
T Consensus 210 VsASfA~lGDi~iAEP~AlIGFAGpRVIEQTi---------------------------re~L----------------- 245 (294)
T COG0777 210 VSASFAMLGDIIIAEPGALIGFAGPRVIEQTI---------------------------REKL----------------- 245 (294)
T ss_pred hhHhHHhccCeeecCcccccccCcchhhhhhh---------------------------cccC-----------------
Confidence 33 3677999999999999999864411100 0100
Q ss_pred HHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 304 NWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 304 ~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
=...-++|..++.|+||.|....|+...+...+.+
T Consensus 246 ---------------------PegfQ~aEfLlehG~iD~iv~R~elr~tla~ll~~ 280 (294)
T COG0777 246 ---------------------PEGFQTAEFLLEHGMIDMIVHRDELRTTLASLLAK 280 (294)
T ss_pred ---------------------CcchhhHHHHHHcCCceeeecHHHHHHHHHHHHHH
Confidence 01223678889999999999999998888888765
No 247
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=97.43 E-value=0.0017 Score=65.05 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCC----C-----------CCHH-HHHHH-------HHHHHHhhhcCCeEEEEec
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPL----S-----------CGWG-KVEEI-------RRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSp----G-----------G~~~-~seeI-------~~~I~~lr~s~KpVva~v~ 219 (537)
.+.++.++|+.|.+|+++.-+++.-++- | ++.. .+.+. ...+..|-..+||+||.++
T Consensus 36 ~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vN 115 (266)
T KOG0016|consen 36 DYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVN 115 (266)
T ss_pred HHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3568999999999999997777765542 2 2111 11222 2244455567999999997
Q ss_pred C-cchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 220 V-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 220 ~-AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
. |.+-|..|-..||.+||+..+.+-- -+.++|.-+++..+=.+ |.
T Consensus 116 GPAIGlgasil~lcD~V~A~Dka~F~T------------Pfa~lGq~PEG~Ss~t~-----p~----------------- 161 (266)
T KOG0016|consen 116 GPAIGLGASILPLCDYVWASDKAWFQT------------PFAKLGQSPEGCSSVTL-----PK----------------- 161 (266)
T ss_pred CCccchhhHHhhhhheEEeccceEEec------------cchhcCCCCCcceeeee-----hH-----------------
Confidence 4 6677888888899999997765422 23467777665442111 00
Q ss_pred HHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 299 DNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+..+ .-+-++-|+.++++||.+.|||+++-...++.+.+.+++
T Consensus 162 ---------------imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~i 206 (266)
T KOG0016|consen 162 ---------------IMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKI 206 (266)
T ss_pred ---------------hhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHH
Confidence 01111 234456799999999999999999987766665555444
No 248
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.38 E-value=0.0034 Score=65.32 Aligned_cols=83 Identities=12% Similarity=-0.015 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.+.. +- ||--+|+||.... .++.|.+.+..+.....|+|+.+ .-++|||.|..+.||.
T Consensus 139 g~rKa~Rlm~lA~~f~-lP-IItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~ 216 (322)
T CHL00198 139 GYRKALRLMKHANKFG-LP-ILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDS 216 (322)
T ss_pred HHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCe
Confidence 4556666666666543 33 5666899996532 34456666665556688999977 5678888887778999
Q ss_pred eEecCCCeeEEec
Q 009327 235 LYAPPSAYFSLYG 247 (537)
Q Consensus 235 I~a~p~s~iGsiG 247 (537)
++|-+++.++.++
T Consensus 217 V~m~e~a~~sVis 229 (322)
T CHL00198 217 IMMLEYAVYTVAT 229 (322)
T ss_pred EEEeCCeEEEecC
Confidence 9999998777664
No 249
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.31 E-value=0.0041 Score=63.55 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHhcCCCc---eEEEEEeCCCCCCHHH-------HHHHHHHHHHhhhcCCeEEEEe-cC--cchhhhHH
Q 009327 162 LSLPQICENFVKAAYDPRI---VGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYV-PV--CGEKEYYL 228 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~I---kaIVL~InSpGG~~~~-------seeI~~~I~~lr~s~KpVva~v-~~--AaSgGY~I 228 (537)
...+.+...++.|.+|..- --+|+-++|.|+.... .-++...+.+++.. .|+|+.+ +. |.+|+.|+
T Consensus 78 ~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~ 156 (274)
T TIGR03133 78 VHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAA-VPVIGVIGGRVGCFGGMGIA 156 (274)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHH
Confidence 4567899999999873331 2588889999875432 33566677777665 8999887 44 77888899
Q ss_pred hhccCeeEecCCCeeEEecc
Q 009327 229 ACACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 229 AsaaD~I~a~p~s~iGsiGv 248 (537)
++.||.++|.|.+.++..|.
T Consensus 157 a~l~D~vim~~~a~i~~aGP 176 (274)
T TIGR03133 157 AGLCSYLIMTEEGRLGLSGP 176 (274)
T ss_pred HhcCCEEEEeCCcEEeccCH
Confidence 99999999999988888765
No 250
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.31 E-value=0.0046 Score=62.66 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.+. ++- ||--+||||.... ..+.+.+.+..+...+.|+|+.+ .-|.|||+|..+.||.
T Consensus 83 g~rKa~R~~~lA~~~-~lP-vV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~ 160 (256)
T PRK12319 83 GYRKALRLMKQAEKF-GRP-VVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQ 160 (256)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCE
Confidence 456666666667654 333 5566899996542 23445666666555679999987 5788999999999999
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.++.
T Consensus 161 v~m~~~a~~~v~~p 174 (256)
T PRK12319 161 VWMLENTMYAVLSP 174 (256)
T ss_pred EEEecCceEEEcCH
Confidence 99999998877754
No 251
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.20 E-value=0.012 Score=60.46 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-Ccc-hhhhHHhhccC
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCG-EKEYYLACACE 233 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~Aa-SgGY~IAsaaD 233 (537)
..+.+.+.++.|.+. ++- ||.-++|+|... .+.-.+..++.++++.+.|.|+++- -+. .+.|..++.+|
T Consensus 140 ~geKi~r~~e~A~~~-~lP-lV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D 217 (285)
T TIGR00515 140 VGEKFVRAIEKALED-NCP-LIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLGD 217 (285)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCC
Confidence 466778777777654 454 455589988532 2223344567777777899998884 444 44566678999
Q ss_pred eeEecCCCeeEEecc
Q 009327 234 ELYAPPSAYFSLYGL 248 (537)
Q Consensus 234 ~I~a~p~s~iGsiGv 248 (537)
.|+|.|++.+|..|.
T Consensus 218 ~iia~p~A~ig~aGp 232 (285)
T TIGR00515 218 LNIAEPKALIGFAGP 232 (285)
T ss_pred EEEEECCeEEEcCCH
Confidence 999999998888765
No 252
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.16 E-value=0.0048 Score=69.86 Aligned_cols=84 Identities=14% Similarity=0.030 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|... ++- ||--+|+||... +.++.|++.+..+.....|+|+.+ .-|+|||.|..+.||.
T Consensus 227 GyRKAlRlmkLAekf-gLP-IVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~ 304 (762)
T PLN03229 227 GYRKALRMMYYADHH-GFP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANK 304 (762)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCE
Confidence 355666666666554 333 566699999664 244556666776655679999987 5788888888888999
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.+|.
T Consensus 305 VlMle~A~~sVisP 318 (762)
T PLN03229 305 LLMLENAVFYVASP 318 (762)
T ss_pred EEEecCCeEEecCH
Confidence 99999998777754
No 253
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.16 E-value=0.0055 Score=65.53 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.... +- ||--+|+||... ..++.|.+.+..+-..+.|+|+.+ .-++|||-+..+.||+
T Consensus 206 GyRKAlR~mklAekf~-lP-IVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~ 283 (431)
T PLN03230 206 GYRKALRFMRHAEKFG-FP-ILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNR 283 (431)
T ss_pred HHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCE
Confidence 4555666666665543 32 566689999653 234456677776666789999977 5566666555567899
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.++.
T Consensus 284 VlMle~A~ysVisP 297 (431)
T PLN03230 284 MLMMENAVYYVASP 297 (431)
T ss_pred EEEecCCEEEecCH
Confidence 99999998777654
No 254
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.13 E-value=0.0043 Score=64.57 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.+. ++- ||--+|+||.... .++.+.+.+..+.....|+|+.+ .-+.|||.|..+.||.
T Consensus 136 g~rKa~R~m~lA~~f-~lP-IVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~ 213 (319)
T PRK05724 136 GYRKALRLMKMAEKF-GLP-IITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDR 213 (319)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCe
Confidence 455555555666544 343 5666899996533 33456666776666789999987 5678888887778999
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.++.
T Consensus 214 v~m~~~A~~svisP 227 (319)
T PRK05724 214 VLMLEYSTYSVISP 227 (319)
T ss_pred eeeecCceEeecCH
Confidence 99999998887754
No 255
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.12 E-value=0.0053 Score=63.87 Aligned_cols=84 Identities=14% Similarity=0.083 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.+. ++- ||--+|+||.... .++.|.+.+..+.....|+|+.+ .-|+|||.|..+.||.
T Consensus 136 g~rKa~R~m~lA~~f-~iP-vVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~ 213 (316)
T TIGR00513 136 GYRKALRLMKMAERF-KMP-IITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDK 213 (316)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCE
Confidence 455666666666554 333 5666899997632 23456666665655689999977 5677888887778999
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.++.
T Consensus 214 v~m~~~a~~sVisP 227 (316)
T TIGR00513 214 VNMLEYSTYSVISP 227 (316)
T ss_pred EEEecCceEEecCH
Confidence 99999998887754
No 256
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.09 E-value=0.0089 Score=61.60 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhh-hcCCeEEEEe-c-CcchhhhHHhhc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFK-KSGKFIIGYV-P-VCGEKEYYLACA 231 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr-~s~KpVva~v-~-~AaSgGY~IAsa 231 (537)
...+.+.++++.|.+.. +- +|+-.+|.|+.. .+.-.+..++..++ +.+.|+|+.+ + .++.+.|..|+.
T Consensus 152 v~geKi~ra~e~A~~~r-lP-lV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l 229 (296)
T CHL00174 152 VVGEKITRLIEYATNES-LP-LIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFGML 229 (296)
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHc
Confidence 45678888888887753 43 666678876432 22233444455544 4678999988 4 345556666888
Q ss_pred cCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009327 232 CEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSS 311 (537)
Q Consensus 232 aD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~ 311 (537)
||.|+|.|.+.+|..|...... .+..
T Consensus 230 ~Diiiae~~A~IgfAGPrVIe~---------------------------t~ge--------------------------- 255 (296)
T CHL00174 230 GDIIIAEPNAYIAFAGKRVIEQ---------------------------TLNK--------------------------- 255 (296)
T ss_pred ccEEEEeCCeEEEeeCHHHHHH---------------------------hcCC---------------------------
Confidence 9999999999999887633110 0000
Q ss_pred hcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 312 TKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 312 ~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
.+ -...-+++-.++.|+||.+....++.+.+.+.+.+
T Consensus 256 --~l---------pe~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 256 --TV---------PEGSQAAEYLFDKGLFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred --cC---------CcccccHHHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence 00 01123677788999999999999998888887754
No 257
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.78 E-value=0.023 Score=58.74 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-Ccc-hhhhHHhhcc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCG-EKEYYLACAC 232 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~Aa-SgGY~IAsaa 232 (537)
...+.+.+.++.|.+. ++- ||.-.+|+|... .+.-.+..++.++++.+.|.|+++- -+. .+.|..++.+
T Consensus 140 ~~~eKi~r~~e~A~~~-~lP-lV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~ 217 (292)
T PRK05654 140 VVGEKIVRAVERAIEE-KCP-LVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG 217 (292)
T ss_pred HHHHHHHHHHHHHHHc-CCC-EEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC
Confidence 3466788777777765 454 444568888532 1222344567777777899998884 444 4455568889
Q ss_pred CeeEecCCCeeEEecc
Q 009327 233 EELYAPPSAYFSLYGL 248 (537)
Q Consensus 233 D~I~a~p~s~iGsiGv 248 (537)
|.++|.|++.+|..|.
T Consensus 218 D~iia~p~A~ig~aGp 233 (292)
T PRK05654 218 DIIIAEPKALIGFAGP 233 (292)
T ss_pred CEEEEecCcEEEecCH
Confidence 9999999998888875
No 258
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.74 E-value=0.0082 Score=62.11 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHhcCC---CceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEec-C--cchhhhHH
Q 009327 162 LSLPQICENFVKAAYDP---RIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-V--CGEKEYYL 228 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~---~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v~-~--AaSgGY~I 228 (537)
.....+...++.|.++. ...-+|+-++|.|+... +.-++...+.+++.. .|+|+.+. . |.+|+-|+
T Consensus 87 ~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~ 165 (301)
T PRK07189 87 VHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIA 165 (301)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHH
Confidence 45678888888888764 12367888999886542 334666677777665 99999884 3 78888888
Q ss_pred hhccCeeEecCCCeeEEecc
Q 009327 229 ACACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 229 AsaaD~I~a~p~s~iGsiGv 248 (537)
++.||.|+|.+.+.+|..|.
T Consensus 166 a~l~D~iIm~~~a~iglaGP 185 (301)
T PRK07189 166 AALCSYLIVSEEGRLGLSGP 185 (301)
T ss_pred HhcCCEEEEECCcEEeccCH
Confidence 99999999999988888775
No 259
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.56 E-value=0.029 Score=56.30 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHh-cCCCceEEEEEeCCCCCCHHH-------HHHHH---HHHHHhhhcCCeEEEEe-cCcchhhhHHhh-
Q 009327 164 LPQICENFVKAA-YDPRIVGIYLHIEPLSCGWGK-------VEEIR---RHVVDFKKSGKFIIGYV-PVCGEKEYYLAC- 230 (537)
Q Consensus 164 ~~~l~~~L~~A~-~D~~IkaIVL~InSpGG~~~~-------seeI~---~~I~~lr~s~KpVva~v-~~AaSgGY~IAs- 230 (537)
.....+.+..+. ++.++ -||.-+|+||-.... .+.+. +.+..++..+.|+|+.+ ..+.||||+.-+
T Consensus 50 ~~k~A~~v~~~~d~~f~~-PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~ 128 (238)
T TIGR03134 50 ALALAQAVLDVIEADDKR-PIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGL 128 (238)
T ss_pred HHHHHHHHHHHHHhcCCC-CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHcc
Confidence 345666666653 34554 477779999955422 23334 44555555679999988 467777766554
Q ss_pred ccCeeEecCCCeeEEecc
Q 009327 231 ACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 231 aaD~I~a~p~s~iGsiGv 248 (537)
.+|.+||-|++.++.++.
T Consensus 129 ~ad~v~Alp~A~i~vm~~ 146 (238)
T TIGR03134 129 QADRIIALPGAMVHVMDL 146 (238)
T ss_pred CcCeEEEcCCcEEEecCH
Confidence 599999999998887754
No 260
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.49 E-value=0.028 Score=58.10 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=60.8
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHhc-CCCCEEEEECchhhHHHHHH-HH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLS-ESKPVIASMSDVAASGGYYM-AM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~l-A~ 481 (537)
+....+.+.+.++.+.+. ++- +|.-.+|+|...... ..+..++..+. ...|.|+.+.|.|+||+.+. ++
T Consensus 138 g~~~~eKi~r~~e~A~~~-~lP-lV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~ 215 (292)
T PRK05654 138 GSVVGEKIVRAVERAIEE-KCP-LVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAM 215 (292)
T ss_pred cHHHHHHHHHHHHHHHHc-CCC-EEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHH
Confidence 345678888888888765 454 555568888654331 12233444453 37999999999999997665 67
Q ss_pred hcCeEEEcCCceeeeee
Q 009327 482 AAGTILAENLTLTGSIG 498 (537)
Q Consensus 482 a~D~i~A~p~a~~GsIG 498 (537)
.||+++|.|++.+|..|
T Consensus 216 ~~D~iia~p~A~ig~aG 232 (292)
T PRK05654 216 LGDIIIAEPKALIGFAG 232 (292)
T ss_pred cCCEEEEecCcEEEecC
Confidence 79999999999887555
No 261
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.40 E-value=0.024 Score=58.46 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=72.5
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHh--cCCCCEEEEECchhhHHHHHH-H
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLL--SESKPVIASMSDVAASGGYYM-A 480 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~--~~~kPVIA~v~G~AasgG~~l-A 480 (537)
+....+.+.++++.+.+. .+ .+|+-.+|.|+..... ..+..++..+ ....|.|+.+.|.|+||+.+. |
T Consensus 150 G~v~geKi~ra~e~A~~~-rl-PlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a 227 (296)
T CHL00174 150 GSVVGEKITRLIEYATNE-SL-PLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFG 227 (296)
T ss_pred CHHHHHHHHHHHHHHHHc-CC-CEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHH
Confidence 345678899988888764 33 5666677877654321 1222223332 237999999999999998887 6
Q ss_pred HhcCeEEEcCCceeee---------ee-cccCcccHHHHHHHhCCceEeecccCCc
Q 009327 481 MAAGTILAENLTLTGS---------IG-VVTGKFNLGKLYEKIGFNKEIISRGKYA 526 (537)
Q Consensus 481 ~a~D~i~A~p~a~~Gs---------IG-V~~~~~~~~~L~~k~G~~~~~i~~g~~~ 526 (537)
+.||+++|.|++.+|- +| -+|..+...+.+-.-|+=--++.+.+.|
T Consensus 228 ~l~Diiiae~~A~IgfAGPrVIe~t~ge~lpe~fq~ae~l~~~G~vD~iV~r~~lr 283 (296)
T CHL00174 228 MLGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQAAEYLFDKGLFDLIVPRNLLK 283 (296)
T ss_pred HcccEEEEeCCeEEEeeCHHHHHHhcCCcCCcccccHHHHHhCcCceEEEcHHHHH
Confidence 6699999999998884 33 2333333344444466655555544443
No 262
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=96.40 E-value=0.018 Score=58.35 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+...+.++.+.+. + ..||--+||||...-. +..+.+.+..+.. ..|+|+.|-|.|.|||++....||
T Consensus 82 ~g~rKa~R~~~lA~~~-~-lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D 159 (256)
T PRK12319 82 EGYRKALRLMKQAEKF-G-RPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVAD 159 (256)
T ss_pred HHHHHHHHHHHHHHHc-C-CCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCC
Confidence 4556666767666543 3 4566668999976421 2345555555434 799999999999999999999999
Q ss_pred eEEEcCCceeeeee
Q 009327 485 TILAENLTLTGSIG 498 (537)
Q Consensus 485 ~i~A~p~a~~GsIG 498 (537)
+++|.|++.++.++
T Consensus 160 ~v~m~~~a~~~v~~ 173 (256)
T PRK12319 160 QVWMLENTMYAVLS 173 (256)
T ss_pred EEEEecCceEEEcC
Confidence 99999999887443
No 263
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.24 E-value=0.022 Score=64.68 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchH-------HHHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCe
Q 009327 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-------ASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGT 485 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~-------~s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~ 485 (537)
.++...+.++.|.+- -..||--+||||.... .+..+.+.+..+.. ..|+|+.|-|-|.|||.+....||+
T Consensus 227 GyRKAlRlmkLAekf--gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~ 304 (762)
T PLN03229 227 GYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANK 304 (762)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCE
Confidence 355566666655543 2566777899997642 13445555655533 7999999999999999999999999
Q ss_pred EEEcCCceeeeee
Q 009327 486 ILAENLTLTGSIG 498 (537)
Q Consensus 486 i~A~p~a~~GsIG 498 (537)
++|.+++.++-+|
T Consensus 305 VlMle~A~~sVis 317 (762)
T PLN03229 305 LLMLENAVFYVAS 317 (762)
T ss_pred EEEecCCeEEecC
Confidence 9999998876443
No 264
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.22 E-value=0.05 Score=56.07 Aligned_cols=86 Identities=26% Similarity=0.323 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHhcC-CCCEEEEECchhhHHHHH-HHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLSE-SKPVIASMSDVAASGGYY-MAM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~-lA~ 481 (537)
+....+.+.++++.+.+. ++ .+|+-.+|+|...... ..+..++..+.. ..|.|+.+.|.|+||+.+ .++
T Consensus 137 g~~~geKi~r~~e~A~~~-~l-PlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~ 214 (285)
T TIGR00515 137 GSVVGEKFVRAIEKALED-NC-PLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAM 214 (285)
T ss_pred cHHHHHHHHHHHHHHHHc-CC-CEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHh
Confidence 345678888888887754 44 4555578888654332 122334444443 799999999999999766 457
Q ss_pred hcCeEEEcCCceeeeee
Q 009327 482 AAGTILAENLTLTGSIG 498 (537)
Q Consensus 482 a~D~i~A~p~a~~GsIG 498 (537)
.+|+++|.|++.+|..|
T Consensus 215 ~~D~iia~p~A~ig~aG 231 (285)
T TIGR00515 215 LGDLNIAEPKALIGFAG 231 (285)
T ss_pred CCCEEEEECCeEEEcCC
Confidence 99999999998887544
No 265
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=96.16 E-value=0.034 Score=57.99 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+...+.++.+.+- + ..||--+||||...-. +..+.+.+..+. ...|+|+.|-|.|.|||.+....||
T Consensus 138 ~g~rKa~Rlm~lA~~f-~-lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD 215 (322)
T CHL00198 138 GGYRKALRLMKHANKF-G-LPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGD 215 (322)
T ss_pred HHHHHHHHHHHHHHHc-C-CCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCC
Confidence 3456666666666543 2 5666678999976321 234445554333 3899999999999999988888899
Q ss_pred eEEEcCCceeeee
Q 009327 485 TILAENLTLTGSI 497 (537)
Q Consensus 485 ~i~A~p~a~~GsI 497 (537)
+++|.+++.+.-+
T Consensus 216 ~V~m~e~a~~sVi 228 (322)
T CHL00198 216 SIMMLEYAVYTVA 228 (322)
T ss_pred eEEEeCCeEEEec
Confidence 9999999888643
No 266
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.13 E-value=0.031 Score=58.25 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhc
Q 009327 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 412 ~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
....+...+.++.+.+- + ..||--+||||...-. +..+.+.+..+.. ..|+|+.|-|.|.|||.+....|
T Consensus 134 p~g~rKa~R~m~lA~~f-~-iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a 211 (316)
T TIGR00513 134 PEGYRKALRLMKMAERF-K-MPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG 211 (316)
T ss_pred HHHHHHHHHHHHHHHHc-C-CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC
Confidence 34456666666666543 2 5667778999976321 2344555554433 89999999999999999877789
Q ss_pred CeEEEcCCceeeeee
Q 009327 484 GTILAENLTLTGSIG 498 (537)
Q Consensus 484 D~i~A~p~a~~GsIG 498 (537)
|+++|.|++.++.++
T Consensus 212 D~v~m~~~a~~sVis 226 (316)
T TIGR00513 212 DKVNMLEYSTYSVIS 226 (316)
T ss_pred CEEEEecCceEEecC
Confidence 999999999887443
No 267
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=95.92 E-value=0.046 Score=58.64 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+...+.++.|.+. -.-||--+||||...-. +..|.+.+..+.. ..|+|+.|-|-|.|||.+...+||
T Consensus 205 eGyRKAlR~mklAekf--~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD 282 (431)
T PLN03230 205 NGYRKALRFMRHAEKF--GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGN 282 (431)
T ss_pred HHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCC
Confidence 4456666666666543 25666678999875311 2345565655533 799999999999888888777899
Q ss_pred eEEEcCCceeeeee
Q 009327 485 TILAENLTLTGSIG 498 (537)
Q Consensus 485 ~i~A~p~a~~GsIG 498 (537)
+++|.+++.++-+|
T Consensus 283 ~VlMle~A~ysVis 296 (431)
T PLN03230 283 RMLMMENAVYYVAS 296 (431)
T ss_pred EEEEecCCEEEecC
Confidence 99999998876443
No 268
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=95.85 E-value=0.053 Score=56.61 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+...+.++.+.+- + ..||--+||||...-. +..+.+.+..+.. ..|+|+.|-|-|.|||.+....||
T Consensus 135 eg~rKa~R~m~lA~~f-~-lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD 212 (319)
T PRK05724 135 EGYRKALRLMKMAEKF-G-LPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGD 212 (319)
T ss_pred HHHHHHHHHHHHHHHc-C-CCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccC
Confidence 4455666666665543 3 4566678999975321 2345555555433 899999999999999998888899
Q ss_pred eEEEcCCceeeeee
Q 009327 485 TILAENLTLTGSIG 498 (537)
Q Consensus 485 ~i~A~p~a~~GsIG 498 (537)
+++|.|++.++.++
T Consensus 213 ~v~m~~~A~~svis 226 (319)
T PRK05724 213 RVLMLEYSTYSVIS 226 (319)
T ss_pred eeeeecCceEeecC
Confidence 99999999886443
No 269
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.83 E-value=0.11 Score=57.91 Aligned_cols=148 Identities=11% Similarity=0.150 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHH-------HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhc---
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA--- 231 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~-------seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsa--- 231 (537)
+.+.+.+.++.|.+. ++- ||.-+|+||-.... ...+.+.+..+.+...|.|+++- .+++|||+..+.
T Consensus 335 ~~~K~~r~i~~a~~~-~lP-lV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~ 412 (512)
T TIGR01117 335 SSDKIARFIRFCDAF-NIP-IVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHL 412 (512)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccC
Confidence 455666667766543 443 56668999954322 23444455555667899999885 566777666553
Q ss_pred -cCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009327 232 -CEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVS 310 (537)
Q Consensus 232 -aD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va 310 (537)
+|.+||-|++.++..|.-...- .+ |+.-.. ....++ +...+.+...+
T Consensus 413 ~~d~~~a~p~a~~~v~~pe~a~~----i~--------------~~~~l~----~~~~~~--~~~~~~~~~~~-------- 460 (512)
T TIGR01117 413 GADQVYAWPTAEIAVMGPAGAAN----II--------------FRKDIK----EAKDPA--ATRKQKIAEYR-------- 460 (512)
T ss_pred CCCEEEEcCCCeEeecCHHHHHH----HH--------------hhhhcc----cccCHH--HHHHHHHHHHH--------
Confidence 9999999999999887633110 00 010000 000011 11111111111
Q ss_pred HhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 311 STKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 311 ~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
....++..+.+.|+||+|..+.|..+.+.+.+.+
T Consensus 461 ---------------~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~ 494 (512)
T TIGR01117 461 ---------------EEFANPYKAAARGYVDDVIEPKQTRPKIVNALAM 494 (512)
T ss_pred ---------------HhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHH
Confidence 1234667889999999999999988888777654
No 270
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.76 E-value=0.043 Score=60.81 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=61.4
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCC--chHH-------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGG--DALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG--~~~~-------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~ 481 (537)
+....+.+.++++.+.+. .+ .+|.-.+|.|+ .... +..+...+..+....|+|+++.|.|+|||.|++.
T Consensus 74 g~~~~~Ki~ra~~~A~~~-~~-P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~~~ 151 (493)
T PF01039_consen 74 GEVHGEKIARAIELALEN-GL-PLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYLAA 151 (493)
T ss_dssp SHHHHHHHHHHHHHHHHH-TE-EEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHHHH
T ss_pred CcccceeeehHHHHHHHc-CC-CcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhccc
Confidence 345678888888888876 33 34455678887 3322 2345555555555999999999999999999999
Q ss_pred hcCeEEEcCC-ceee
Q 009327 482 AAGTILAENL-TLTG 495 (537)
Q Consensus 482 a~D~i~A~p~-a~~G 495 (537)
.||++++.+. +.++
T Consensus 152 ~~d~~i~~~~~a~i~ 166 (493)
T PF01039_consen 152 LSDFVIMVKGTARIF 166 (493)
T ss_dssp HSSEEEEETTTCEEE
T ss_pred ccCccccCccceEEE
Confidence 9999999998 7765
No 271
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.75 E-value=0.023 Score=57.85 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCC-------HHHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCee
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCG-------WGKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEEL 235 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~-------~~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~I 235 (537)
++.-++.++.|.+=. .=||.-||+||-. -++++.|.+-+.++-..+.|||+.+ .-..|||-+--..||++
T Consensus 136 yRKAlRlm~~AekF~--lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V 213 (317)
T COG0825 136 YRKALRLMKLAEKFG--LPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRV 213 (317)
T ss_pred HHHHHHHHHHHHHhC--CCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHH
Confidence 443333444444322 2377789999843 3577889999998877899999977 66778887777789999
Q ss_pred EecCCCeeEEe
Q 009327 236 YAPPSAYFSLY 246 (537)
Q Consensus 236 ~a~p~s~iGsi 246 (537)
+|-.++....|
T Consensus 214 ~mle~s~ySVi 224 (317)
T COG0825 214 LMLENSTYSVI 224 (317)
T ss_pred HHHHhceeeec
Confidence 99888765544
No 272
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.70 E-value=0.52 Score=52.30 Aligned_cols=85 Identities=12% Similarity=-0.030 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhcc
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACAC 232 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaa 232 (537)
....+.+++..+.|.++.- - +|.-.||.|+.. ...-+|...-.++.. -+|.|+.+ ..|+.||.|+-..|
T Consensus 109 ~~~~~Ki~r~~~~A~~~g~-P-~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg-~IPqIsvv~G~c~gGgaY~pal~ 185 (526)
T COG4799 109 EMTAKKILRAQELAIENGL-P-VIGLNDSGGARIQEGVPSLAGYGRIFYRNARASG-VIPQISVVMGPCAGGGAYSPALT 185 (526)
T ss_pred ccccchHHHHHHHHHHcCC-C-EEEEEcccccccccCccccccchHHHHHHHHhcc-CCCEEEEEEecCccccccccccc
Confidence 3456788888888887643 2 333356655332 111233332223322 37999877 57888888888899
Q ss_pred CeeEecCC-CeeEEecc
Q 009327 233 EELYAPPS-AYFSLYGL 248 (537)
Q Consensus 233 D~I~a~p~-s~iGsiGv 248 (537)
|.++|-.. +.+...|.
T Consensus 186 D~~imv~~~~~mfltGP 202 (526)
T COG4799 186 DFVIMVRDQSYMFLTGP 202 (526)
T ss_pred ceEEEEcCCccEEeeCH
Confidence 99999887 55555553
No 273
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.65 E-value=0.075 Score=53.41 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHHh-cCCCCeEEEEeCCCCCchHH-------HHHHH---HHHHHhc-CCCCEEEEECchhhHHHHHHH
Q 009327 413 IIGEQLIEKIRKVRE-SKRYKAAIIRIDSPGGDALA-------SDLMW---REIRLLS-ESKPVIASMSDVAASGGYYMA 480 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~-d~~vraVVL~i~SpGG~~~~-------s~~i~---~~i~~~~-~~kPVIA~v~G~AasgG~~lA 480 (537)
.......+.++.+.+ +.+ ..||.-+|+||-..-. ...+. ..+..+. .+.|+|+.|-|-+.||||...
T Consensus 48 ~~~~k~A~~v~~~~d~~f~-~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lam 126 (238)
T TIGR03134 48 DEALALAQAVLDVIEADDK-RPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAH 126 (238)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHH
Confidence 345667777777543 344 6778889999854311 12223 3333332 269999999999999887765
Q ss_pred H-hcCeEEEcCCceeeeee
Q 009327 481 M-AAGTILAENLTLTGSIG 498 (537)
Q Consensus 481 ~-a~D~i~A~p~a~~GsIG 498 (537)
. .+|.++|-|++.++.++
T Consensus 127 g~~ad~v~Alp~A~i~vm~ 145 (238)
T TIGR03134 127 GLQADRIIALPGAMVHVMD 145 (238)
T ss_pred ccCcCeEEEcCCcEEEecC
Confidence 4 48999999999987433
No 274
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.18 E-value=0.18 Score=56.85 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH----------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA----------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYM 479 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~----------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~l 479 (537)
+....+.+.+.++.+.+. . -.+|.-++|+|+.... ...+...+..+.. ..|.|+.+-|.|+|||.|+
T Consensus 146 g~~~~~Ki~r~~elA~~~-~-lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~ 223 (569)
T PLN02820 146 YPITVKKHLRAQEIAAQC-R-LPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYV 223 (569)
T ss_pred CHHHHHHHHHHHHHHHHc-C-CCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHH
Confidence 345667888888877654 3 3566667888866511 1233444444433 6999999999999999999
Q ss_pred HHhcCeEEEcC-Cceee
Q 009327 480 AMAAGTILAEN-LTLTG 495 (537)
Q Consensus 480 A~a~D~i~A~p-~a~~G 495 (537)
...||.+++.+ ++.++
T Consensus 224 ~a~~D~vim~~~~a~i~ 240 (569)
T PLN02820 224 PAMADESVIVKGNGTIF 240 (569)
T ss_pred HHhCCceEEecCCcEEE
Confidence 99999988875 56554
No 275
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.81 E-value=0.84 Score=50.07 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=50.4
Q ss_pred CCeEEEEEEeeeeccCc----cc---ccCC----CCCHH-HHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHH
Q 009327 138 KGSVLTMKLRGQIADQL----KS---RFSS----GLSLP-QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVV 205 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~----~~---~~~~----~~s~~-~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~ 205 (537)
.+.|++|-=+|.+.... .. .|+. +...+ ++.+.|+-..+||+.++|+|-+++.+- ...+.++.+
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~----~~~f~~aa~ 225 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKD----GRKFLKTAR 225 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecCCCC----HHHHHHHHH
Confidence 56799999888654321 11 1110 11111 566778888899999999999998642 244555666
Q ss_pred HhhhcCCeEEEEec
Q 009327 206 DFKKSGKFIIGYVP 219 (537)
Q Consensus 206 ~lr~s~KpVva~v~ 219 (537)
+... +||||++-.
T Consensus 226 ~a~~-~KPVv~~k~ 238 (447)
T TIGR02717 226 EISK-KKPIVVLKS 238 (447)
T ss_pred HHcC-CCCEEEEec
Confidence 6543 899999874
No 276
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=94.42 E-value=0.29 Score=51.46 Aligned_cols=100 Identities=14% Similarity=0.017 Sum_probs=63.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCC---HHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHHHHH--------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLS---LPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVEEIR-------- 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s---~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~seeI~-------- 201 (537)
++...+|.++ ++... +.++ ...+...|.+-+.++.++.|||.-+++ ||++.+..++.
T Consensus 45 ~~~~r~itLN------RPKaL-NAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~ 117 (401)
T KOG1684|consen 45 KGCARVITLN------RPKAL-NALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEV 117 (401)
T ss_pred CCceeEEEec------Cchhh-ccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHH
Confidence 4566777773 32211 2222 346778888999999999999999864 77765432221
Q ss_pred --------HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeE
Q 009327 202 --------RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFS 244 (537)
Q Consensus 202 --------~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iG 244 (537)
..+..+-.-.||+||.++ .-.+||.-|+.+.-..+|...|.+.
T Consensus 118 ~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~A 169 (401)
T KOG1684|consen 118 KKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFA 169 (401)
T ss_pred HHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceec
Confidence 112222123799999998 4567888888876665555555443
No 277
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=93.22 E-value=0.62 Score=46.57 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCch---HHH-------HHHHHHHHHhc-CCCCEEEEECchhhHHHHHH-HHh
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDA---LAS-------DLMWREIRLLS-ESKPVIASMSDVAASGGYYM-AMA 482 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~---~~s-------~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~l-A~a 482 (537)
.-.+.+.+.+.-++..-|.||+-+|+||-.. ... ....+.+...+ ++-|||+.+-|.|+||||.- .+.
T Consensus 48 a~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~Glq 127 (234)
T PF06833_consen 48 AWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQ 127 (234)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHH
Confidence 3455555555556667799999999997322 111 11222222222 38999999999999999875 789
Q ss_pred cCeEEEcCCceee
Q 009327 483 AGTILAENLTLTG 495 (537)
Q Consensus 483 ~D~i~A~p~a~~G 495 (537)
+|.+||-|.+.+-
T Consensus 128 A~rl~AL~ga~i~ 140 (234)
T PF06833_consen 128 ANRLIALPGAMIH 140 (234)
T ss_pred hcchhcCCCCeee
Confidence 9999999977664
No 278
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=92.87 E-value=0.72 Score=46.11 Aligned_cols=121 Identities=14% Similarity=0.198 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCCCHHHH----------HHHHHHHHHhhhcCCeEEEEe-cCcchhhhHH-hhccCe
Q 009327 167 ICENFVKAAYDPRIVGIYLHIEPLSCGWGKV----------EEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYL-ACACEE 234 (537)
Q Consensus 167 l~~~L~~A~~D~~IkaIVL~InSpGG~~~~s----------eeI~~~I~~lr~s~KpVva~v-~~AaSgGY~I-AsaaD~ 234 (537)
+.+.+.+.-++..=+.||+-+|+||=....- --+.+.+...|.+|-|||+.+ +.|.|||+.- +..||+
T Consensus 51 lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r 130 (234)
T PF06833_consen 51 LAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR 130 (234)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc
Confidence 4444444444444578999999997332222 234555677778899999988 5799998865 377999
Q ss_pred eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009327 235 LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKG 314 (537)
Q Consensus 235 I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg 314 (537)
|||-|.+.+-..+ +..+|+=.+
T Consensus 131 l~AL~ga~i~vM~----------------------------------------------------------~~s~ARVTk 152 (234)
T PF06833_consen 131 LIALPGAMIHVMG----------------------------------------------------------KPSAARVTK 152 (234)
T ss_pred hhcCCCCeeecCC----------------------------------------------------------hHHhHHHhh
Confidence 9998854432221 122444456
Q ss_pred CCHHHHHHHHcc-Cc--ccHHHHHHcCCceeecC
Q 009327 315 KRKEDIERFIND-GV--YKVERLKEEGFITNVLY 345 (537)
Q Consensus 315 ~~~~~v~~~~~g-~v--~ta~eAle~GLVD~i~~ 345 (537)
++.|+++++... .+ +..+--.++|+++++-.
T Consensus 153 ~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 153 RPVEELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred cCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 778888888764 33 35577788999998865
No 279
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=92.14 E-value=1 Score=45.93 Aligned_cols=114 Identities=22% Similarity=0.323 Sum_probs=74.2
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHH-HHHHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGG-YYMAM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG-~~lA~ 481 (537)
+....+.+.++++++.++ +...|++. .|.|..... +..+-.++..++. ..|.|+++.+.-.||= ...|+
T Consensus 139 GsVvGeki~ra~E~A~e~-k~P~v~f~-aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~ 216 (294)
T COG0777 139 GSVVGEKITRAIERAIED-KLPLVLFS-ASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAM 216 (294)
T ss_pred hHHHHHHHHHHHHHHHHh-CCCEEEEe-cCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHh
Confidence 345678999999999876 45555554 344433332 2334455655544 8999999988776543 35688
Q ss_pred hcCeEEEcCCceeeeee----------cccCcccHHHHHHHhCCceEeecccCCc
Q 009327 482 AAGTILAENLTLTGSIG----------VVTGKFNLGKLYEKIGFNKEIISRGKYA 526 (537)
Q Consensus 482 a~D~i~A~p~a~~GsIG----------V~~~~~~~~~L~~k~G~~~~~i~~g~~~ 526 (537)
.+|+++|.|.|.+|-.| -.|..+-..+.+-+.|.---++.+.+.+
T Consensus 217 lGDi~iAEP~AlIGFAGpRVIEQTire~LPegfQ~aEfLlehG~iD~iv~R~elr 271 (294)
T COG0777 217 LGDIIIAEPGALIGFAGPRVIEQTIREKLPEGFQTAEFLLEHGMIDMIVHRDELR 271 (294)
T ss_pred ccCeeecCcccccccCcchhhhhhhcccCCcchhhHHHHHHcCCceeeecHHHHH
Confidence 89999999999999544 2344455556666666665555554433
No 280
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=91.29 E-value=0.36 Score=49.41 Aligned_cols=80 Identities=13% Similarity=0.180 Sum_probs=54.5
Q ss_pred ccCCeEEEEEEeeeeccCcccc-----cC---------CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHH
Q 009327 136 VRKGSVLTMKLRGQIADQLKSR-----FS---------SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIR 201 (537)
Q Consensus 136 ~~~~~VavI~l~G~I~~~~~~~-----~~---------~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~ 201 (537)
...++|.+|-=+|+++...... ++ ..+..-.+++.|+...+||+.++||+- .-.||.. =++-+
T Consensus 143 ~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmi-GEiGG~a--Ee~AA 219 (293)
T COG0074 143 YKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMI-GEIGGPA--EEEAA 219 (293)
T ss_pred ccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEE-ecCCCcH--HHHHH
Confidence 3468899999888887542210 11 224445788999999999999999995 4455553 23345
Q ss_pred HHHHHhhhcCCeEEEEec
Q 009327 202 RHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~ 219 (537)
+.|++ +..+||||+|+.
T Consensus 220 ~~i~~-~~~~KPVVa~ia 236 (293)
T COG0074 220 EYIKA-NATRKPVVAYIA 236 (293)
T ss_pred HHHHH-hccCCCEEEEEe
Confidence 56665 445699999995
No 281
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=90.83 E-value=0.42 Score=44.89 Aligned_cols=79 Identities=18% Similarity=0.083 Sum_probs=52.7
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-CCCHHHHHHHHHHHHHhh--hcCCeEE
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFK--KSGKFII 215 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-GG~~~~seeI~~~I~~lr--~s~KpVv 215 (537)
+.--.|.+-|...... +..+.+....+.+.|+...+||++++|++.+--. |..-.-+.++.++++..+ ...||||
T Consensus 35 ~~~~~lDlGgd~~t~G--rphPmid~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvV 112 (153)
T PF00549_consen 35 GPANFLDLGGDAFTQG--RPHPMIDPSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVV 112 (153)
T ss_dssp TEEEEEECTSSSSHTT--S--TTT-SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEE
T ss_pred CceeEEEeCCCccccc--CcCCCcCHHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEE
Confidence 3444566655443211 1134555678999999999999999999998876 434455677777777664 2468999
Q ss_pred EEec
Q 009327 216 GYVP 219 (537)
Q Consensus 216 a~v~ 219 (537)
+++-
T Consensus 113 a~v~ 116 (153)
T PF00549_consen 113 ARVC 116 (153)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9884
No 282
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=90.64 E-value=0.51 Score=44.33 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCC-CCchHHHHHHHHHHHHhc---CCCCEEEEECchhhH
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSP-GGDALASDLMWREIRLLS---ESKPVIASMSDVAAS 474 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~Sp-GG~~~~s~~i~~~i~~~~---~~kPVIA~v~G~Aas 474 (537)
.....++|+...+||++++|++.+.-. |.....+..+.++++... ..+||||+|.|..+=
T Consensus 58 ~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 58 PSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 356889999999999999999987644 333445667777777664 479999999998765
No 283
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=89.93 E-value=0.81 Score=42.16 Aligned_cols=52 Identities=13% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchh
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVA 472 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~A 472 (537)
.+.+.|+.+.+||+.++|++.+.+-+ + .+.+.+..++....||||+...|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~-d---~~~f~~~~~~a~~~KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG-D---GRRFLEAARRAARRKPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC-C---HHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 47777888889999999999998533 2 3667777877755699999998874
No 284
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=89.53 E-value=1.6 Score=42.83 Aligned_cols=99 Identities=9% Similarity=0.004 Sum_probs=66.2
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEE-EEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGI-YLHIEPLSCGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaI-VL~InSpGG~~~~seeI~~~I~~lr~s~KpVv 215 (537)
..+....+.+++++-+... .. +|....+.+..-.. .+.+|||||++..+-++.+.|++. +.=+.
T Consensus 72 ~dgr~l~VvVse~~a~~da---------~s---al~~lir~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~---gfdt~ 136 (245)
T COG3904 72 LDGRQLPVVVSEPGANVDA---------AS---ALGRLIRKAGLYIATGVTLNSPGGSVAKACSMGKLIRED---GFDTA 136 (245)
T ss_pred ccCceeeEEEcCCCCCccH---------HH---HHHHHHhccCceeEEEEEecCCCCcHHHHHhhhhhhhhc---ccCcc
Confidence 3567788888777766532 22 22222233333333 377899999999999999888853 44333
Q ss_pred -EEecCcchhhhHHhhccCeeEecCCCeeEEecccc
Q 009327 216 -GYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTV 250 (537)
Q Consensus 216 -a~v~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~ 250 (537)
.-..+|+|+--++-++.-+.++.+.+.+|.+-++.
T Consensus 137 v~s~A~CasaCpl~fagGvrRvve~~ayiGVHq~~~ 172 (245)
T COG3904 137 VDSGAMCASACPLMFAGGVRRVVEDFAYIGVHQITT 172 (245)
T ss_pred ccchhhhhccchhhhhcceeeeecccceeeeeeccc
Confidence 33347888877777777888999999888886543
No 285
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=89.34 E-value=1.9 Score=37.61 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=57.1
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCC--------ceEEEEEeCCC-CCCHHHHHHHHHHHHHh
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR--------IVGIYLHIEPL-SCGWGKVEEIRRHVVDF 207 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~--------IkaIVL~InSp-GG~~~~seeI~~~I~~l 207 (537)
..+.+.+++++|++.... .+.+.+.+.+...... ++.|||++..- .-+..+.+.|.+..+.+
T Consensus 6 ~~~~v~ii~~~g~l~f~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~ 76 (117)
T PF01740_consen 6 THDGVLIIRLDGPLFFAN---------AEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKEL 76 (117)
T ss_dssp EETTEEEEEEESEESHHH---------HHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHH
T ss_pred EECCEEEEEEeeEEEHHH---------HHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence 356789999999998764 4688899988887665 89999999884 45677788888888888
Q ss_pred hhcCCeEEEE
Q 009327 208 KKSGKFIIGY 217 (537)
Q Consensus 208 r~s~KpVva~ 217 (537)
++.+..++-.
T Consensus 77 ~~~g~~~~l~ 86 (117)
T PF01740_consen 77 RRRGVQLVLV 86 (117)
T ss_dssp HHTTCEEEEE
T ss_pred HHCCCEEEEE
Confidence 8777766543
No 286
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=88.32 E-value=1.1 Score=41.35 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecC
Q 009327 166 QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPV 220 (537)
Q Consensus 166 ~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~ 220 (537)
++.+.|+-..+||++++|+|-+++.+- .+++.+.+++.+.. ||||++-..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~-KPVv~lk~G 90 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARR-KPVVVLKAG 90 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCC-S-EEEEE--
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcC-CCEEEEeCC
Confidence 456667777889999999999998663 46777788877655 999999853
No 287
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=86.62 E-value=4.1 Score=35.07 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=51.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHHHhhhcCCeEEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKSGKFIIG 216 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~~lr~s~KpVva 216 (537)
.+.+.+++++|++.... .+++.+.+.++......+.|||++.. +--+......|.+.++.+++.|+.++-
T Consensus 8 ~~~~~v~~l~G~L~~~~---------a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l 78 (109)
T cd07041 8 WDGVLVLPLIGDLDDER---------AEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTIL 78 (109)
T ss_pred eCCEEEEeeeeeECHHH---------HHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEE
Confidence 34589999999998764 35677766554443467899999965 445667778888888888777766544
Q ss_pred E
Q 009327 217 Y 217 (537)
Q Consensus 217 ~ 217 (537)
.
T Consensus 79 ~ 79 (109)
T cd07041 79 T 79 (109)
T ss_pred E
Confidence 3
No 288
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=86.14 E-value=5.6 Score=33.79 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=52.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCCeEEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIG 216 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~KpVva 216 (537)
.+.+.+++++|++.-.. .+.+.+.+..+..++..+.|||++..-. -+......|....+++++.++.++-
T Consensus 6 ~~~v~ii~~~G~l~f~~---------~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l 76 (100)
T cd06844 6 VDDYWVVRLEGELDHHS---------VEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVL 76 (100)
T ss_pred ECCEEEEEEEEEecHhh---------HHHHHHHHHHHHHhCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEE
Confidence 45699999999998763 4577777766555567889999987633 4566677788888888777777654
Q ss_pred Ee
Q 009327 217 YV 218 (537)
Q Consensus 217 ~v 218 (537)
+.
T Consensus 77 ~~ 78 (100)
T cd06844 77 TG 78 (100)
T ss_pred EC
Confidence 43
No 289
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=85.66 E-value=2.1 Score=47.55 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH--------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA--------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~--------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+.+.++.+.+.+. ..- +|.-.+|.|+.... ++..++..+ +...+|.|+.|-|.|++||.|+...||
T Consensus 110 ~~~~Ki~r~~~~A~~~-g~P-~i~l~dsgGari~~~v~~l~g~g~iF~~~a~-~Sg~IPqIsvv~G~c~gGgaY~pal~D 186 (526)
T COG4799 110 MTAKKILRAQELAIEN-GLP-VIGLNDSGGARIQEGVPSLAGYGRIFYRNAR-ASGVIPQISVVMGPCAGGGAYSPALTD 186 (526)
T ss_pred cccchHHHHHHHHHHc-CCC-EEEEEcccccccccCccccccchHHHHHHHH-hccCCCEEEEEEecCcccccccccccc
Confidence 3456677777777654 223 33334566654321 222233333 323599999999999999999999999
Q ss_pred eEEEcCCc
Q 009327 485 TILAENLT 492 (537)
Q Consensus 485 ~i~A~p~a 492 (537)
++||.+++
T Consensus 187 ~~imv~~~ 194 (526)
T COG4799 187 FVIMVRDQ 194 (526)
T ss_pred eEEEEcCC
Confidence 99999883
No 290
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=85.43 E-value=4.1 Score=34.82 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=49.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-CCCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-GG~~~~seeI~~~I~~lr~s~KpVv 215 (537)
.+.+.+++++|++.-.. .+.+.+.+.++-..+..+.|+|++..- .-+......+...++++++.++.++
T Consensus 6 ~~~~~vi~l~G~L~f~~---------~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~ 75 (106)
T TIGR02886 6 KGDVLIVRLSGELDHHT---------AERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVI 75 (106)
T ss_pred ECCEEEEEEecccchhh---------HHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEE
Confidence 46799999999997763 467788887765445678999988764 3455556666667777777676554
No 291
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=85.22 E-value=3.4 Score=42.20 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecC---
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPP--- 239 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p--- 239 (537)
..+..+.++...+.||.+|+||+.-.-|| +..++++.|+..+=++.+......--..|+..+|..+-..
T Consensus 46 e~EttIskI~~lAdDp~mKaIVv~q~vpG--------t~~af~kIkekRpDIl~ia~~~~EDp~~i~~~aDi~~~~D~~~ 117 (275)
T PF12683_consen 46 EQETTISKIVSLADDPDMKAIVVSQAVPG--------TAEAFRKIKEKRPDILLIAGEPHEDPEVISSAADIVVNPDEIS 117 (275)
T ss_dssp CHHHHHHHHHGGGG-TTEEEEEEE-SS-----------HHHHHHHHHH-TTSEEEESS--S-HHHHHHHSSEEEE--HHH
T ss_pred hHHHHHHHHHHhccCCCccEEEEeCCCcc--------hHHHHHHHHhcCCCeEEEcCCCcCCHHHHhhccCeEeccchhh
Confidence 36789999999999999999999888787 2234444544444444444333333334444444333211
Q ss_pred ----------------CCeeEE-----e-cccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHH
Q 009327 240 ----------------SAYFSL-----Y-GLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 297 (537)
Q Consensus 240 ----------------~s~iGs-----i-Gv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~ 297 (537)
.--+.+ . .+....-.+++.++++|+++..+.+. +|.|+....-.|+.
T Consensus 118 ~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taP-----------DP~sd~gv~gaqqf 186 (275)
T PF12683_consen 118 RGYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAP-----------DPTSDVGVAGAQQF 186 (275)
T ss_dssp HHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE--------------SSTCHHHHHHHH
T ss_pred ccHHHHHHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCC-----------CCCCCCCcHHHHHH
Confidence 100100 0 01111222567788899999877653 56677777777777
Q ss_pred HHHHHHHHHHHH
Q 009327 298 LDNIYGNWLDKV 309 (537)
Q Consensus 298 l~~~y~~F~~~V 309 (537)
+.+--..|++..
T Consensus 187 IlE~vp~~i~kY 198 (275)
T PF12683_consen 187 ILEDVPKWIKKY 198 (275)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666555554444
No 292
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=84.61 E-value=1.1 Score=42.24 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=35.6
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW 194 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~ 194 (537)
.++++.|++.+|.|....-. ++++-+.++-..+. |. .-||||++||||.+
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~------~LReeisail~~a~-~~-DeV~~rLES~GG~V 145 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVE------SLREEISAILSVAT-PE-DEVLVRLESPGGMV 145 (155)
T ss_pred CCCeEEEEecCCCccHHHHH------HHHHHHHHHHHhCC-CC-CeEEEEEecCCcee
Confidence 46899999999999876432 45554455554443 23 57899999999865
No 293
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=84.36 E-value=7.3 Score=32.20 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCCeEEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIG 216 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~KpVva 216 (537)
.+.+.++.+.|.+.-.. .+.+.+.+.++.+++ ++.|+|++..-. -+..+...|.+.++.+++.++.+..
T Consensus 6 ~~~~~ii~l~G~l~~~~---------~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i 75 (99)
T cd07043 6 RGGVLVVRLSGELDAAT---------APELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVL 75 (99)
T ss_pred ECCEEEEEEeceecccc---------hHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEE
Confidence 45789999999987653 457777777776554 789999987743 4566778888888888777776543
Q ss_pred E
Q 009327 217 Y 217 (537)
Q Consensus 217 ~ 217 (537)
.
T Consensus 76 ~ 76 (99)
T cd07043 76 V 76 (99)
T ss_pred E
Confidence 3
No 294
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=83.97 E-value=4.1 Score=44.23 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEe-CCCCCCHHHHHHHHHHHHH-----------------hhhc-----CCeEEEEe
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHVVD-----------------FKKS-----GKFIIGYV 218 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~I-nSpGG~~~~seeI~~~I~~-----------------lr~s-----~KpVva~v 218 (537)
.+.+++..++++++++. ++++||++ +.|||.+.++..+...+.. +... ++|+|+.+
T Consensus 216 ~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~PlvvLv 294 (406)
T COG0793 216 GTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVVLV 294 (406)
T ss_pred chHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEEEE
Confidence 35677889998998876 99999999 4589999999888877551 1111 48999999
Q ss_pred c-CcchhhhHHhhccC-----eeEecCCCeeEEec
Q 009327 219 P-VCGEKEYYLACACE-----ELYAPPSAYFSLYG 247 (537)
Q Consensus 219 ~-~AaSgGY~IAsaaD-----~I~a~p~s~iGsiG 247 (537)
+ ..||++=.+|.+-. .|+-..+.-.|+++
T Consensus 295 n~~SASAsEI~agalqd~~ra~lVG~~TfGkg~vQ 329 (406)
T COG0793 295 NEGSASASEIFAGALQDYGRATLVGETTFGKGTVQ 329 (406)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEecccccceEEE
Confidence 7 68888777765533 35554444455554
No 295
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=83.79 E-value=6.8 Score=33.35 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=50.3
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~KpVv 215 (537)
..+.+.+|++.|.+.-.. ...+.+.+.++..++..+.|++++..-. -+......|.+.++.+++.++.++
T Consensus 9 ~~~~~~vi~~~G~l~~~~---------~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~ 79 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAHT---------APLLREKVTPAAERTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLV 79 (108)
T ss_pred EECCEEEEEEeccccccc---------HHHHHHHHHHHHHhcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEE
Confidence 456799999999987653 4677788877776667889999877643 233445666666777766676654
Q ss_pred EE
Q 009327 216 GY 217 (537)
Q Consensus 216 a~ 217 (537)
-+
T Consensus 80 l~ 81 (108)
T TIGR00377 80 LV 81 (108)
T ss_pred EE
Confidence 43
No 296
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=83.08 E-value=7 Score=42.47 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-CCCCchHHHHHHHHHHHH---h---
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL---L--- 458 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-SpGG~~~~s~~i~~~i~~---~--- 458 (537)
+++.|+.|+|..-- ....+++..+++++.++. ++++||.+- -|||.+.++..+...... .
T Consensus 201 ~~~~IGyI~I~~F~------------~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~ 267 (406)
T COG0793 201 GKGRIGYIRIPSFG------------EGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVST 267 (406)
T ss_pred CCceEEEEEecccc------------cchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEE
Confidence 34568888875433 234577999999999875 999999753 478888877666655441 0
Q ss_pred ------------c-----CCCCEEEEECchhhHHHHHHHHhc
Q 009327 459 ------------S-----ESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 459 ------------~-----~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
. .++|+++.||+..||++=.+|-+-
T Consensus 268 ~~r~g~~~~~~~~~~~~~~~~PlvvLvn~~SASAsEI~agal 309 (406)
T COG0793 268 RGRNGKVNVYFSASGEALYDGPLVVLVNEGSASASEIFAGAL 309 (406)
T ss_pred ecCCCceeeccccccccCCCCCEEEEECCCCccHHHHHHHHH
Confidence 0 148999999999999998887765
No 297
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=82.95 E-value=2.4 Score=43.48 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
.-.++++|..+.+||+.++||+-.. .||.... ...+.|++....||||+++-|..+
T Consensus 185 Gt~fid~L~~fe~Dp~T~~ivmiGE-iGG~aEe--~AA~~i~~~~~~KPVVa~iaG~ta 240 (293)
T COG0074 185 GTSFIDALEMFEADPETEAIVMIGE-IGGPAEE--EAAEYIKANATRKPVVAYIAGRTA 240 (293)
T ss_pred CccHHHHHHHHhcCccccEEEEEec-CCCcHHH--HHHHHHHHhccCCCEEEEEeccCC
Confidence 3458999999999999999999654 4665432 223444442225999999999987
No 298
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=82.86 E-value=8.6 Score=37.55 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=57.7
Q ss_pred EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-CCCCCchHHHHHHHHHHHH-----------
Q 009327 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-DSPGGDALASDLMWREIRL----------- 457 (537)
Q Consensus 390 VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~SpGG~~~~s~~i~~~i~~----------- 457 (537)
|+.|.|+.-.. ....+.+.+.+..+.+ +++++||.+ +.+||....+..+...+..
T Consensus 61 igYi~i~~f~~-----------~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~ 127 (224)
T cd06567 61 IGYIRIPSFSA-----------ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRR 127 (224)
T ss_pred eEEEEECccCC-----------cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecC
Confidence 77777775431 1345677788877765 799999965 3478887766666555532
Q ss_pred ------h-------cCCCCEEEEECchhhHHHHHHHHhc
Q 009327 458 ------L-------SESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 458 ------~-------~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
. ...+||++.+++.++|++=.++.+-
T Consensus 128 ~~~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~~l 166 (224)
T cd06567 128 GGNETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGAL 166 (224)
T ss_pred CCceeEEecCCCCcccCCCEEEEECCCCccHHHHHHHHH
Confidence 0 0158999999999999999888775
No 299
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=82.58 E-value=17 Score=36.29 Aligned_cols=121 Identities=19% Similarity=0.135 Sum_probs=70.2
Q ss_pred HHHHcCCceeecCchHHHHHHHHHhCCCCCCCCCeeecccccccccccccccCCCCcEEEEEEecccccCCCCCCCCCcc
Q 009327 333 RLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSG 412 (537)
Q Consensus 333 eAle~GLVD~i~~~dd~i~~l~~~~g~~~~~~~~~v~y~~y~~~~~~~~~~~~~~~~VavI~i~G~I~~~~~~~~~~~~~ 412 (537)
+.++.+.-+...+.+++.+.+.+.+..-.+....+.. |+.|+|+.-.... ..
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~l~~~l~~l~D~H~~~~~--------------------IgYl~i~~f~~~~--------~~ 79 (250)
T cd07563 28 ARLRAQVYLDITSPEELAAVLTADLQELGDGHLNVSY--------------------IGYLRIDSFGGFE--------IA 79 (250)
T ss_pred HHHhccccccCCCHHHHHHHHHHhhhccCCCcEEEEE--------------------eEEEEEcccCChh--------hh
Confidence 3344444435556677777776655432222222211 6667766543210 01
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeC-CCCCchHHHHHHHHHHHH-------------------------------hcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL-------------------------------LSE 460 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~-SpGG~~~~s~~i~~~i~~-------------------------------~~~ 460 (537)
...+.+.+++..+.+. +++||.+- .+||....+..+...+.. ..-
T Consensus 80 ~~~~~~~~~~~~l~~~---~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (250)
T cd07563 80 AAEALLDEALDKLADT---DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGY 156 (250)
T ss_pred hhHHHHHHHHHHhcCC---CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccC
Confidence 2234566667666532 89999652 367777655555444420 001
Q ss_pred CCCEEEEECchhhHHHHHHHHhcC
Q 009327 461 SKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 461 ~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
.+||++.+++.++|+|-.++.++.
T Consensus 157 ~~pv~vL~~~~T~SaaE~~a~~lk 180 (250)
T cd07563 157 TKPVYVLTSPVTFSAAEEFAYALK 180 (250)
T ss_pred CCCEEEEeCCCcCcHHHHHHHHHH
Confidence 479999999999999999998873
No 300
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=82.27 E-value=1 Score=42.38 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=36.5
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA 447 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~ 447 (537)
.++++.|+.++|.|.-+.. ....+++...|.-+..+ .-||||+.||||.+.+
T Consensus 96 ~~~r~~VldF~Gdi~A~~v-------~~LReeisail~~a~~~---DeV~~rLES~GG~Vh~ 147 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEV-------ESLREEISAILSVATPE---DEVLVRLESPGGMVHG 147 (155)
T ss_pred CCCeEEEEecCCCccHHHH-------HHHHHHHHHHHHhCCCC---CeEEEEEecCCceeec
Confidence 4689999999999974211 12345666666555433 5789999999997754
No 301
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=82.23 E-value=3 Score=43.80 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
++.+.|+.+.+||+.++|+|.+...|-....+....+. ....||||+++-|..+
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~---~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN---NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh---hcCCCcEEEEEecCCC
Confidence 47888899999999999999987543332233232222 2238999999999876
No 302
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=79.04 E-value=7.8 Score=38.19 Aligned_cols=93 Identities=20% Similarity=0.157 Sum_probs=61.0
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEE-EEeCCCCCchHHHHHHHHHHHHhcCCCCEEE
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAI-IRIDSPGGDALASDLMWREIRLLSESKPVIA 466 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVV-L~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA 466 (537)
++.--|.+++++.+.+ ..-.|.+.++. +..-... +.+|||||.+..+-.+.+.|++. ..-+..
T Consensus 74 gr~l~VvVse~~a~~d----------a~sal~~lir~----~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~--gfdt~v 137 (245)
T COG3904 74 GRQLPVVVSEPGANVD----------AASALGRLIRK----AGLYIATGVTLNSPGGSVAKACSMGKLIRED--GFDTAV 137 (245)
T ss_pred CceeeEEEcCCCCCcc----------HHHHHHHHHhc----cCceeEEEEEecCCCCcHHHHHhhhhhhhhc--ccCccc
Confidence 4555567777776521 12234444443 3333333 56899999998888888888865 555555
Q ss_pred EECchhhHHHHHHHHhcCeEEEcCCceeee
Q 009327 467 SMSDVAASGGYYMAMAAGTILAENLTLTGS 496 (537)
Q Consensus 467 ~v~G~AasgG~~lA~a~D~i~A~p~a~~Gs 496 (537)
.=.-.|+|+--++-+++=.+++.+.+.+|-
T Consensus 138 ~s~A~CasaCpl~fagGvrRvve~~ayiGV 167 (245)
T COG3904 138 DSGAMCASACPLMFAGGVRRVVEDFAYIGV 167 (245)
T ss_pred cchhhhhccchhhhhcceeeeecccceeee
Confidence 555677777777777777789888777763
No 303
>PLN02522 ATP citrate (pro-S)-lyase
Probab=78.75 E-value=4.2 Score=46.34 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 418 LIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 418 l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
+.+.|+.+.+||+.++|+|.+.- ||. ..+.+.+.+++....||||+++-|.++
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEi-Gg~--~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGEL-GGR--DEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEec-Cch--hHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 78888899999999999998762 332 224555666665458999999999887
No 304
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=76.82 E-value=18 Score=39.04 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=59.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-CCCCCchHHHHHHHHHHHH--------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-DSPGGDALASDLMWREIRL-------- 457 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~SpGG~~~~s~~i~~~i~~-------- 457 (537)
.++|+.|+|+.=- ....+++.++++++.+ .+++++||.+ +.+||.+..+..+...+..
T Consensus 193 ~~~IgYi~i~~F~------------~~~~~~~~~~l~~l~~-~~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~ 259 (389)
T PLN00049 193 SPKIGYIKLTTFN------------QNASSAVKEAIETLRA-NGVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIA 259 (389)
T ss_pred CCCEEEEEecccc------------chhHHHHHHHHHHHHH-CCCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEe
Confidence 4589999984432 1245678888988875 4689999964 3468887766555554411
Q ss_pred ----------------hcCCCCEEEEECchhhHHHHHHHHhc
Q 009327 458 ----------------LSESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 458 ----------------~~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
..-.+|+++.+|+..||++=.+|.+=
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~al 301 (389)
T PLN00049 260 DSRGVRDIYDADGSSAIATSEPLAVLVNKGTASASEILAGAL 301 (389)
T ss_pred cCCCceeEEecCCCccccCCCCEEEEECCCCccHHHHHHHHH
Confidence 00147999999999999998887765
No 305
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=75.80 E-value=21 Score=36.14 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=61.4
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-CCCCCchHHHHHHHHHHHH-------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-DSPGGDALASDLMWREIRL------- 457 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~SpGG~~~~s~~i~~~i~~------- 457 (537)
..++|+.|.++.=.. ...+++.++++++.+ .+++++||.+ +.+||.+..+..+...+..
T Consensus 62 ~~~~IGYi~i~~F~~------------~~~~~l~~a~~~l~~-~~~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~ 128 (256)
T cd07561 62 GGKKVGYLVYNSFTS------------GYDDELNQAFAEFKA-QGVTELVLDLRYNGGGLVSSANLLASLLAPAVALGQV 128 (256)
T ss_pred CCCcEEEEEECcccc------------chHHHHHHHHHHHHH-cCCCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCe
Confidence 567899999885332 245789999999885 4799999965 3478887776665555432
Q ss_pred -----hc---------------------C--CCCEEEEECchhhHHHHHHHHhc
Q 009327 458 -----LS---------------------E--SKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 458 -----~~---------------------~--~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
.+ . .+||++.+++..||++=.++.+-
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~VL~~~~TASAaE~~a~~L 182 (256)
T cd07561 129 FATLEYNDKRSANNEDLLFSSKTLAGGNSLNLSKVYVLTSGSTASASELVINSL 182 (256)
T ss_pred EEEEEecCCccCCCceeecccccccccCcCCcccEEEEECCCcccHHHHHHHHh
Confidence 00 0 25999999999999998887664
No 306
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=75.53 E-value=14 Score=36.04 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=52.1
Q ss_pred EEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe-CCCCCCHHHHHHHHHHHHH-------------
Q 009327 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHVVD------------- 206 (537)
Q Consensus 141 VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I-nSpGG~~~~seeI~~~I~~------------- 206 (537)
|++|.+..-.. ....+.+.+.+.+..+ +++++||++ +.+||....+..|...+..
T Consensus 61 igYi~i~~f~~---------~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~ 129 (224)
T cd06567 61 IGYIRIPSFSA---------ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGG 129 (224)
T ss_pred eEEEEECccCC---------cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 77787754321 1124566666666665 799999999 4578888788777777653
Q ss_pred ----h------hhcCCeEEEEec-CcchhhhHHhhc
Q 009327 207 ----F------KKSGKFIIGYVP-VCGEKEYYLACA 231 (537)
Q Consensus 207 ----l------r~s~KpVva~v~-~AaSgGY~IAsa 231 (537)
. ....+||++.++ ..+|++=.+|.+
T Consensus 130 ~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~~ 165 (224)
T cd06567 130 NETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGA 165 (224)
T ss_pred ceeEEecCCCCcccCCCEEEEECCCCccHHHHHHHH
Confidence 0 012579999997 566665555544
No 307
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=75.39 E-value=19 Score=37.69 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=60.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-CCCCCchHHHHHHHHHHHH--------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-DSPGGDALASDLMWREIRL-------- 457 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~SpGG~~~~s~~i~~~i~~-------- 457 (537)
.+.|+.|.+..--. ...+++.+++.++.+ .+++++||.+ +.+||.+..+..+...+-.
T Consensus 150 ~~~igYi~i~~f~~------------~~~~~~~~~l~~l~~-~~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~ 216 (334)
T TIGR00225 150 GKSVGYIRISSFSE------------HTTEDVKKALDKLEK-KNAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTK 216 (334)
T ss_pred CcEEEEEEEEeccc------------chHHHHHHHHHHHHh-ccCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 45788898877432 235678888888764 5789999965 3478887766555554311
Q ss_pred --------h------cCCCCEEEEECchhhHHHHHHHHhc
Q 009327 458 --------L------SESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 458 --------~------~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
+ .-.+||++.+++..+|++=.+|.+.
T Consensus 217 ~~~g~~~~~~~~~~~~~~~pv~vLvn~~TaSaaE~~a~~l 256 (334)
T TIGR00225 217 DRNGSKRHYKANGRQPYNLPLVVLVNRGSASASEIFAGAL 256 (334)
T ss_pred cCCCcceEEecCCCccCCCCEEEEECCCCCcHHHHHHHHH
Confidence 0 0157999999999999999998887
No 308
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=74.97 E-value=5.1 Score=41.76 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
++.+.|+.+.+||+.++|+|.+.+.|-.......+.++ .+..||||+..-|...
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~a---a~~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKE---SGTEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHH---hcCCCCEEEEEecCCC
Confidence 37788888899999999999998644444344444433 3348999999988875
No 309
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=74.93 E-value=28 Score=29.09 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=52.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCC-CceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCCeE
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDP-RIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFI 214 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~-~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~KpV 214 (537)
..+.+.++.+.|.+.-.. .+.+.+.+.++.... ..+.|||++..-. -+...+..|.+..+.+++.++.+
T Consensus 6 ~~~~~~v~~l~G~l~~~~---------~~~l~~~~~~~~~~~~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~ 76 (107)
T cd07042 6 EPPGVLIYRIDGPLFFGN---------AEYFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVEL 76 (107)
T ss_pred cCCCEEEEEecCceEeeh---------HHHHHHHHHHHhccCCCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEE
Confidence 466799999999987653 457777777776543 2578889887743 45667788888888888888776
Q ss_pred EEE
Q 009327 215 IGY 217 (537)
Q Consensus 215 va~ 217 (537)
+-.
T Consensus 77 ~l~ 79 (107)
T cd07042 77 YLA 79 (107)
T ss_pred EEe
Confidence 654
No 310
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=74.58 E-value=6.1 Score=41.48 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=50.0
Q ss_pred cCCeEEEEEEeeeeccCcc----c-cc--------CCC-CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQLK----S-RF--------SSG-LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~----~-~~--------~~~-~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~ 202 (537)
..+.|++|-=+|.+..... . .+ ++. +.--++.+.|+...+||+.++|+|-++..|-.-.... +
T Consensus 168 ~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa---~ 244 (317)
T PTZ00187 168 KKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAA---E 244 (317)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHH---H
Confidence 4678999999997654311 0 01 111 1122567788888889999999999998764322222 2
Q ss_pred HHHHhhhcCCeEEEEec
Q 009327 203 HVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~ 219 (537)
.|+.. ..+||||+|..
T Consensus 245 fi~~~-~~~KPVVa~~a 260 (317)
T PTZ00187 245 WIKNN-PIKKPVVSFIA 260 (317)
T ss_pred HHHhh-cCCCcEEEEEe
Confidence 33322 34799999985
No 311
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=73.70 E-value=23 Score=34.83 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=56.2
Q ss_pred EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-CCCCchHHHHHHHHHHHHh----------
Q 009327 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRLL---------- 458 (537)
Q Consensus 390 VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-SpGG~~~~s~~i~~~i~~~---------- 458 (537)
|+.|.+..-.. ...+++.++++++.+. +++++||.+- .+||....+..+...+-.-
T Consensus 50 igYi~i~sf~~------------~~~~~~~~~l~~~~~~-~~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~ 116 (211)
T cd07560 50 IGYIRITSFSE------------NTAEELKKALKELKKQ-GMKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRN 116 (211)
T ss_pred eEEEEEcccCc------------hhHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecC
Confidence 78888775321 2356788888887754 5899999652 4678876655544433210
Q ss_pred ------------cCCCCEEEEECchhhHHHHHHHHhc
Q 009327 459 ------------SESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 459 ------------~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
...+||++.+++..+|+|=.+|.+-
T Consensus 117 g~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~l 153 (211)
T cd07560 117 GKREAYASDDGGLYDGPLVVLVNGGSASASEIVAGAL 153 (211)
T ss_pred CceEEEecCCCccCCCCEEEEeCCCcccHHHHHHHHH
Confidence 0158999999999999998888765
No 312
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=72.55 E-value=11 Score=34.76 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeC-CCCCchHHHHHHHHHHHHh---------------------------cCCCCE
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRLL---------------------------SESKPV 464 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~-SpGG~~~~s~~i~~~i~~~---------------------------~~~kPV 464 (537)
...+.+.+.++++.+ .+++++||.+- .+||+...+..+...+..- .-.+||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 345778888888875 67899999763 4688877666555444210 025799
Q ss_pred EEEECchhhHHHHHHHHhc
Q 009327 465 IASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 465 IA~v~G~AasgG~~lA~a~ 483 (537)
++.+++.|+|+|-.++.+.
T Consensus 94 ~vL~~~~t~Saae~fa~~l 112 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASAL 112 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHH
Confidence 9999999999999998876
No 313
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=71.36 E-value=7.1 Score=40.67 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=51.7
Q ss_pred cCCeEEEEEEeeeeccCcc----c---ccC------CC-CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQLK----S---RFS------SG-LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~----~---~~~------~~-~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~ 202 (537)
..+.|++|--+|.+....- . .|+ +. +.--++.+.|+-..+||+.++|+|-+++.|-......++.+
T Consensus 149 ~~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~ 228 (300)
T PLN00125 149 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIK 228 (300)
T ss_pred CCCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHH
Confidence 4678999999997653211 0 011 11 02225778888889999999999999986655444444433
Q ss_pred HHHHhhhcCCeEEEEec
Q 009327 203 HVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~ 219 (537)
+ .+ .+||||++-.
T Consensus 229 a---a~-~~KPVV~lk~ 241 (300)
T PLN00125 229 E---SG-TEKPVVAFIA 241 (300)
T ss_pred H---hc-CCCCEEEEEe
Confidence 3 32 3899999874
No 314
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=71.20 E-value=3.4 Score=42.56 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCeEEEEeCCCCCchH-------HHHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee
Q 009327 431 YKAAIIRIDSPGGDAL-------ASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG 495 (537)
Q Consensus 431 vraVVL~i~SpGG~~~-------~s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G 495 (537)
-..||.-||+||...- .++.|.+-+.++.. +.|||+.|=|-.-|||..-..-||.++|-+++..-
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~yS 222 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYS 222 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceee
Confidence 3667888999986421 25778888877755 99999999999999999888889999999998774
No 315
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=70.29 E-value=7.9 Score=40.06 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=47.9
Q ss_pred cCCeEEEEEEeeeeccCc----cc---ccC----CCCCH---HHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQL----KS---RFS----SGLSL---PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~----~~---~~~----~~~s~---~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~ 202 (537)
..+.|++|--+|.+.... .. .|+ -+... -++.+.|+...+||+.++|+|-+++.+-... +.++
T Consensus 142 ~~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~---~~~~ 218 (286)
T TIGR01019 142 KPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEE---EAAD 218 (286)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHH---HHHH
Confidence 367899999988654321 11 111 01111 2567777888889999999999997643322 2222
Q ss_pred HHHHhhhcCCeEEEEec
Q 009327 203 HVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~ 219 (537)
.+.. ..+||||++-.
T Consensus 219 ~~~~--~~~KPVV~lk~ 233 (286)
T TIGR01019 219 FIKQ--NMSKPVVGFIA 233 (286)
T ss_pred HHHh--cCCCCEEEEEe
Confidence 2322 15899999864
No 316
>PRK11186 carboxy-terminal protease; Provisional
Probab=69.98 E-value=26 Score=40.57 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=58.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-CCCCCchHHHHHHHHHHHHh-------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-DSPGGDALASDLMWREIRLL------- 458 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~SpGG~~~~s~~i~~~i~~~------- 458 (537)
.++|++|.|.. +.....+++.++|.++.+ .+++++||.+ +-+||.+..+..+...+-.-
T Consensus 352 ~~kIGYI~I~s------------F~~~~~~d~~~~l~~l~~-~~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~ 418 (667)
T PRK11186 352 GEKVGVLDIPG------------FYVGLTDDVKKQLQKLEK-QNVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVR 418 (667)
T ss_pred CCcEEEEEecc------------cccchHHHHHHHHHHHHH-CCCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEe
Confidence 35677777742 112246788888988875 5799999965 34788887766555543110
Q ss_pred ----------------cCCCCEEEEECchhhHHHHHHHHhc
Q 009327 459 ----------------SESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 459 ----------------~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
.-..|+++-||+..||++=.+|.+-
T Consensus 419 ~~~g~~~~~~~~~~~~~~~gPlvVLVN~~SASASEIfA~al 459 (667)
T PRK11186 419 DNNGRVRVDSDTDGVVYYKGPLVVLVDRYSASASEIFAAAM 459 (667)
T ss_pred cCCCceeccccCCcccccCCCEEEEeCCCCccHHHHHHHHH
Confidence 0046999999999999998888776
No 317
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=69.69 E-value=13 Score=38.65 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHhcC---CCCeEEEEeCCCCCchH-----HHHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCe
Q 009327 414 IGEQLIEKIRKVRESK---RYKAAIIRIDSPGGDAL-----ASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGT 485 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~---~vraVVL~i~SpGG~~~-----~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~ 485 (537)
...++.++|+.+.+.. .+.+|||-- +||+.. -.+.+.++|..+ +.|||+.|+.--= =...=+.||.
T Consensus 56 A~~~I~~al~~~~~~~~~~~~Dviii~R--GGGs~eDL~~FN~e~varai~~~--~~PvisaIGHe~D--~ti~D~vAd~ 129 (319)
T PF02601_consen 56 AAASIVSALRKANEMGQADDFDVIIIIR--GGGSIEDLWAFNDEEVARAIAAS--PIPVISAIGHETD--FTIADFVADL 129 (319)
T ss_pred hHHHHHHHHHHHHhccccccccEEEEec--CCCChHHhcccChHHHHHHHHhC--CCCEEEecCCCCC--chHHHHHHHh
Confidence 3578999999998765 678888743 367532 357788888877 9999999963210 0234678899
Q ss_pred EEEcCCce
Q 009327 486 ILAENLTL 493 (537)
Q Consensus 486 i~A~p~a~ 493 (537)
+.++|++-
T Consensus 130 ra~TPtaa 137 (319)
T PF02601_consen 130 RAPTPTAA 137 (319)
T ss_pred hCCCHHHH
Confidence 99999864
No 318
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=69.19 E-value=10 Score=41.62 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhhH
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAAS 474 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aas 474 (537)
++.+.|+.+.+|++.++|+|.+.+-+ ....+.++.++....||||+...|....
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~~~----~~~~f~~aa~~a~~~KPVv~~k~Grs~~ 243 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEGIK----DGRKFLKTAREISKKKPIVVLKSGTSEA 243 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecCCC----CHHHHHHHHHHHcCCCCEEEEecCCChh
Confidence 46788888999999999999987432 2345666666665589999999877543
No 319
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=67.43 E-value=31 Score=37.09 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=58.5
Q ss_pred CCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH---HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcC
Q 009327 409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA---SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 409 ~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~---s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
-+++.+.+.+.++++-...|+++|+|.+.+. ||-..+ ++.|..+++++...+|+|+=..|.-+--|--|.--+.
T Consensus 288 vGGgA~~e~v~~a~~~il~d~~vk~IfVNIf--GGI~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN~e~Gk~iL~esg 364 (387)
T COG0045 288 VGGGATAERVKEAFKLILSDPNVKAIFVNIF--GGITRCDEVAEGIIAALKEVGVNVPLVVRLEGTNVEEGKRILAESG 364 (387)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEEEEc--cCcCccHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHcC
Confidence 3466788899999999999999999999886 664433 4566677776655799999999998888877766555
No 320
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=66.11 E-value=35 Score=37.33 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=54.2
Q ss_pred CccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH---HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHh
Q 009327 410 SSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA---SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMA 482 (537)
Q Consensus 410 ~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~---s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a 482 (537)
+++...+.+.++++-+..|++||+|++.+. ||-..+ ++.|.++++++.-++|||+-..|...=-|.-+.-.
T Consensus 325 GG~a~~~~v~~a~~ii~~d~~vk~iliNIf--GGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~ 398 (422)
T PLN00124 325 GGNASEQQVVEAFKILTSDDKVKAILVNIF--GGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKE 398 (422)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCcEEEEEec--CCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHh
Confidence 345778999999999999999999999886 776554 34444555544447999999999888777777644
No 321
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=66.03 E-value=29 Score=37.36 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEe-CCCCCCHHHHHHHHHHH
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHV 204 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~I-nSpGG~~~~seeI~~~I 204 (537)
+.+++.+.|+++... +++++||++ +.|||.+..+..|...+
T Consensus 208 ~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f 249 (389)
T PLN00049 208 ASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLW 249 (389)
T ss_pred hHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 456788888888653 689999999 45788888777777766
No 322
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=65.70 E-value=11 Score=39.15 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=46.9
Q ss_pred cCCeEEEEEEeeeeccCc----cc---ccC----CCCCH---HHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQL----KS---RFS----SGLSL---PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~----~~---~~~----~~~s~---~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~ 202 (537)
..+.|++|--+|.+.... .. .|+ -+... -++.+.|+-..+||+.++|+|-+++.+-... +.++
T Consensus 144 ~~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~---~a~~ 220 (291)
T PRK05678 144 KKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEE---EAAE 220 (291)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHH---HHHH
Confidence 367899999998654321 10 111 01111 1466777788889999999999996542211 2222
Q ss_pred HHHHhhhcCCeEEEEec
Q 009327 203 HVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~ 219 (537)
.+... .+||||++-.
T Consensus 221 ~~~~~--~~KPVV~lk~ 235 (291)
T PRK05678 221 YIKAN--VTKPVVGYIA 235 (291)
T ss_pred HHHHc--CCCCEEEEEe
Confidence 22221 3899999864
No 323
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=64.24 E-value=39 Score=35.46 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=53.0
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe-CCCCCCHHHHHHHHHHHHHh----------
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHVVDF---------- 207 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I-nSpGG~~~~seeI~~~I~~l---------- 207 (537)
++|++|.+..-- . -..+++.++++++.. .+++++||++ +.+||....+..|...+..-
T Consensus 151 ~~igYi~i~~f~-~---------~~~~~~~~~l~~l~~-~~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~ 219 (334)
T TIGR00225 151 KSVGYIRISSFS-E---------HTTEDVKKALDKLEK-KNAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRN 219 (334)
T ss_pred cEEEEEEEEecc-c---------chHHHHHHHHHHHHh-ccCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 467777775421 1 135678888877654 4789999999 44788888887777765310
Q ss_pred ------h-----hcCCeEEEEec-CcchhhhHHhhc
Q 009327 208 ------K-----KSGKFIIGYVP-VCGEKEYYLACA 231 (537)
Q Consensus 208 ------r-----~s~KpVva~v~-~AaSgGY~IAsa 231 (537)
. .-.+||+..++ ..+|++=.+|.+
T Consensus 220 g~~~~~~~~~~~~~~~pv~vLvn~~TaSaaE~~a~~ 255 (334)
T TIGR00225 220 GSKRHYKANGRQPYNLPLVVLVNRGSASASEIFAGA 255 (334)
T ss_pred CcceEEecCCCccCCCCEEEEECCCCCcHHHHHHHH
Confidence 0 02468888886 556665555544
No 324
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=64.12 E-value=15 Score=38.09 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
++.+.|+.+.+||+.++|+|.+.+. |.... ...+.+.. ...||||+...|...
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~~-~~~~~--~~~~~~~~-~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEIG-GSAEE--EAADFIKQ-NMSKPVVGFIAGATA 237 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC-CchHH--HHHHHHHh-cCCCCEEEEEecCCC
Confidence 5778888899999999999999853 33221 22222222 148999999988864
No 325
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=63.25 E-value=27 Score=38.04 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-----HHHHHHHHHHhcCCCCEEEEECc---hhhHHHHHHHHhcCe
Q 009327 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-----SDLMWREIRLLSESKPVIASMSD---VAASGGYYMAMAAGT 485 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-----s~~i~~~i~~~~~~kPVIA~v~G---~AasgG~~lA~a~D~ 485 (537)
...+++++|+.+.... ..+|||-- +||+... -+.+.++|.++ +.|||+.|+. .. ..=+.||.
T Consensus 177 A~~~i~~al~~~~~~~-~Dviii~R--GGGS~eDL~~Fn~e~v~~ai~~~--~~Pvis~IGHE~D~t-----l~D~vAd~ 246 (438)
T PRK00286 177 AAASIVAAIERANARG-EDVLIVAR--GGGSLEDLWAFNDEAVARAIAAS--RIPVISAVGHETDFT-----IADFVADL 246 (438)
T ss_pred HHHHHHHHHHHhcCCC-CCEEEEec--CCCCHHHhhccCcHHHHHHHHcC--CCCEEEeccCCCCcc-----HHHHhhhc
Confidence 4578999999987643 67777743 3676432 46778888776 9999999953 33 34678999
Q ss_pred EEEcCCc
Q 009327 486 ILAENLT 492 (537)
Q Consensus 486 i~A~p~a 492 (537)
+.++|++
T Consensus 247 ra~TPta 253 (438)
T PRK00286 247 RAPTPTA 253 (438)
T ss_pred cCCChHH
Confidence 9999995
No 326
>PLN02522 ATP citrate (pro-S)-lyase
Probab=62.96 E-value=13 Score=42.33 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=50.8
Q ss_pred cCCeEEEEEEeeeeccCcc----c---cc------CCCC-CHHHHHHHHHHHhcCCCceEEEEEeC-CCCCCHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQLK----S---RF------SSGL-SLPQICENFVKAAYDPRIVGIYLHIE-PLSCGWGKVEEIR 201 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~----~---~~------~~~~-s~~~l~~~L~~A~~D~~IkaIVL~In-SpGG~~~~seeI~ 201 (537)
..++|++|-=+|.+..... . .+ ++.. ..-++.+.|+...+||+.++|+|-+. +.. .-+++.
T Consensus 166 ~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~----~e~~f~ 241 (608)
T PLN02522 166 RPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGR----DEYSLV 241 (608)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCch----hHHHHH
Confidence 3577999988887663211 0 01 0111 01246788888999999999999888 432 235566
Q ss_pred HHHHHhhhcCCeEEEEec
Q 009327 202 RHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~ 219 (537)
+++++.+ .+||||+|..
T Consensus 242 ea~~~a~-~~KPVVa~ka 258 (608)
T PLN02522 242 EALKQGK-VSKPVVAWVS 258 (608)
T ss_pred HHHHHhc-CCCCEEEEec
Confidence 6677654 5899999984
No 327
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=61.58 E-value=28 Score=35.16 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=53.2
Q ss_pred cCCeEEEEEEeeeeccCcc----c-ccC---------CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQLK----S-RFS---------SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~----~-~~~---------~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~ 202 (537)
..+.|.++.=+|+++...- . .++ +.....+++++|+.-.+||..++|+|-.+ -||+. -|+-.+
T Consensus 175 k~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGE-IGG~A--Ee~AA~ 251 (329)
T KOG1255|consen 175 KRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGE-IGGSA--EEEAAE 251 (329)
T ss_pred cCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEec-cCChh--hHHHHH
Confidence 4678999999999875321 0 010 12233479999999999999999999654 34443 234455
Q ss_pred HHHHhh--hcCCeEEEEec
Q 009327 203 HVVDFK--KSGKFIIGYVP 219 (537)
Q Consensus 203 ~I~~lr--~s~KpVva~v~ 219 (537)
.|++.. ...||||+|+.
T Consensus 252 flk~~nSg~~~kPVvsFIA 270 (329)
T KOG1255|consen 252 FLKEYNSGSTAKPVVSFIA 270 (329)
T ss_pred HHHHhccCCCCCceeEEee
Confidence 555532 24689999985
No 328
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=61.49 E-value=20 Score=39.18 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-----HHHHHHHHHHhcCCCCEEEEECchhhHHHH-HHHHhcCeEE
Q 009327 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-----SDLMWREIRLLSESKPVIASMSDVAASGGY-YMAMAAGTIL 487 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-----s~~i~~~i~~~~~~kPVIA~v~G~AasgG~-~lA~a~D~i~ 487 (537)
...++.++|+.+.+..++.++|+-- +||++.. -+.+.++|.+. .+|||.+|+.=- =+ ..=..||++-
T Consensus 177 A~~eIv~aI~~an~~~~~DvlIVaR--GGGSiEDLW~FNdE~vaRAi~~s--~iPvISAVGHEt---D~tL~DfVAD~RA 249 (440)
T COG1570 177 AAEEIVEAIERANQRGDVDVLIVAR--GGGSIEDLWAFNDEIVARAIAAS--RIPVISAVGHET---DFTLADFVADLRA 249 (440)
T ss_pred cHHHHHHHHHHhhccCCCCEEEEec--CcchHHHHhccChHHHHHHHHhC--CCCeEeecccCC---CccHHHhhhhccC
Confidence 3578999999999999899988843 4777543 25667777755 999999996311 11 2346789999
Q ss_pred EcCCc
Q 009327 488 AENLT 492 (537)
Q Consensus 488 A~p~a 492 (537)
++|++
T Consensus 250 pTPTa 254 (440)
T COG1570 250 PTPTA 254 (440)
T ss_pred CCchH
Confidence 99984
No 329
>PRK06091 membrane protein FdrA; Validated
Probab=59.51 E-value=15 Score=41.48 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=50.0
Q ss_pred cCCeEEEEEEeeeeccCcc-------cccCC--CCCHH---------HHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQLK-------SRFSS--GLSLP---------QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVE 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~-------~~~~~--~~s~~---------~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~se 198 (537)
+.+.|++|--+|.+..... -.|+. +++-+ ++.+.|+...+||+.+.|+|-+.-|+-++. +
T Consensus 192 ~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~--~ 269 (555)
T PRK06091 192 PEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVR--L 269 (555)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHH--H
Confidence 4778999999997543211 01110 11111 477888889999999999999987763333 2
Q ss_pred HHHHHHHHhhhcCCeEEEEec
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~ 219 (537)
++ +..+++.+||||++-.
T Consensus 270 ~f---l~aar~~~KPVVvlk~ 287 (555)
T PRK06091 270 KI---INAMKATGKPVVALFL 287 (555)
T ss_pred HH---HHHHhhCCCCEEEEEe
Confidence 33 3334456999999864
No 330
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=59.29 E-value=19 Score=39.44 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCchH-----HHHHHHHHHHHhcCCCCEEEEECc---hhhHHHHHHHHhcCeE
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-----ASDLMWREIRLLSESKPVIASMSD---VAASGGYYMAMAAGTI 486 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~-----~s~~i~~~i~~~~~~kPVIA~v~G---~AasgG~~lA~a~D~i 486 (537)
..++.++|+.+...+++.+|||-- +||+.. -.+.+.++|..+ +.|||..|+. .. ..=+.||.+
T Consensus 172 ~~~i~~al~~~~~~~~~dviii~R--GGGs~eDL~~Fn~e~~~rai~~~--~~Pvis~iGHe~D~t-----i~D~vAd~r 242 (432)
T TIGR00237 172 VQSIVESIELANTKNECDVLIVGR--GGGSLEDLWSFNDEKVARAIFLS--KIPIISAVGHETDFT-----ISDFVADLR 242 (432)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEec--CCCCHHHhhhcCcHHHHHHHHcC--CCCEEEecCcCCCcc-----HHHHhhhcc
Confidence 578999999998766688888743 367643 246778888766 9999999953 33 345788999
Q ss_pred EEcCCc
Q 009327 487 LAENLT 492 (537)
Q Consensus 487 ~A~p~a 492 (537)
.++|++
T Consensus 243 a~TPta 248 (432)
T TIGR00237 243 APTPSA 248 (432)
T ss_pred CCCcHH
Confidence 999985
No 331
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=59.20 E-value=98 Score=33.75 Aligned_cols=73 Identities=12% Similarity=0.014 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHH-----HHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV-----EEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYA 237 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~s-----eeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a 237 (537)
...+|+++|+.+.... +..||| +- .||+.... +++.++|.. ++.|||+-++.-.- =...=..||....
T Consensus 177 A~~~i~~al~~~~~~~-~Dviii-~R-GGGS~eDL~~Fn~e~v~~ai~~---~~~Pvis~IGHE~D-~tl~D~vAd~ra~ 249 (438)
T PRK00286 177 AAASIVAAIERANARG-EDVLIV-AR-GGGSLEDLWAFNDEAVARAIAA---SRIPVISAVGHETD-FTIADFVADLRAP 249 (438)
T ss_pred HHHHHHHHHHHhcCCC-CCEEEE-ec-CCCCHHHhhccCcHHHHHHHHc---CCCCEEEeccCCCC-ccHHHHhhhccCC
Confidence 4679999999987633 444444 33 35565444 678888884 58999987753211 0133367999999
Q ss_pred cCCCe
Q 009327 238 PPSAY 242 (537)
Q Consensus 238 ~p~s~ 242 (537)
.|++.
T Consensus 250 TPtaa 254 (438)
T PRK00286 250 TPTAA 254 (438)
T ss_pred ChHHH
Confidence 99864
No 332
>smart00245 TSPc tail specific protease. tail specific protease
Probab=59.02 E-value=76 Score=30.41 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=57.7
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-CCCCchHHHHHHHHHHHH--h------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL--L------ 458 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-SpGG~~~~s~~i~~~i~~--~------ 458 (537)
+.|+.|.+..-- . ...+.+.++++++.+ .+++++||.+- .+||....+..+...+.. .
T Consensus 28 ~~igYi~i~~f~-~-----------~~~~~~~~~~~~l~~-~~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~ 94 (192)
T smart00245 28 GNIGYIRIPEFS-E-----------HTSNLVEKAWKKLEK-TNVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIY 94 (192)
T ss_pred CcEEEEEEeEEC-h-----------hhHHHHHHHHHHHHh-CCCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 567878775421 1 245678888888875 47999999753 367877666555444311 0
Q ss_pred c---------------CCCCEEEEECchhhHHHHHHHHhc
Q 009327 459 S---------------ESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 459 ~---------------~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
+ -.+||++.+++..+|++=.+|.+-
T Consensus 95 ~~~~~~~~~~~~~~~~~~~pv~vL~~~~TaSaaE~~a~~l 134 (192)
T smart00245 95 RRTGELETYPANLGRKYSKPLVVLVNEGTASASEIFAGAL 134 (192)
T ss_pred cCCCceEEEecCCCcccCCCEEEEECCCCeeHHHHHHHHH
Confidence 0 038999999999999999988876
No 333
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=58.37 E-value=48 Score=32.52 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=51.5
Q ss_pred EEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHHHh------h-----
Q 009327 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDF------K----- 208 (537)
Q Consensus 141 VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~~l------r----- 208 (537)
|++|.+..- .. -..+++.+.++++.+. +++++||++-. +||....+..|...+..- +
T Consensus 50 igYi~i~sf-~~---------~~~~~~~~~l~~~~~~-~~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~ 118 (211)
T cd07560 50 IGYIRITSF-SE---------NTAEELKKALKELKKQ-GMKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGK 118 (211)
T ss_pred eEEEEEccc-Cc---------hhHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCc
Confidence 888888542 11 1346788888877654 49999999944 677877777666654420 0
Q ss_pred ----------hcCCeEEEEec-CcchhhhHHhhc
Q 009327 209 ----------KSGKFIIGYVP-VCGEKEYYLACA 231 (537)
Q Consensus 209 ----------~s~KpVva~v~-~AaSgGY~IAsa 231 (537)
...+||++.++ ..+|++=.+|.+
T Consensus 119 ~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~ 152 (211)
T cd07560 119 REAYASDDGGLYDGPLVVLVNGGSASASEIVAGA 152 (211)
T ss_pred eEEEecCCCccCCCCEEEEeCCCcccHHHHHHHH
Confidence 12578888886 456665444443
No 334
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=57.35 E-value=22 Score=36.91 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
++.+.|+.+.+||+.++|+|.+.+- ++... ...+.+.. +..||||+.-.|...
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE~~-~~~~~--~a~~~~~~-~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGEIG-GSAEE--EAAEYIKA-NVTKPVVGYIAGVTA 239 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC-CcHHH--HHHHHHHH-cCCCCEEEEEecCCC
Confidence 4778888889999999999999842 22211 11122221 138999999988865
No 335
>PRK11186 carboxy-terminal protease; Provisional
Probab=57.28 E-value=48 Score=38.43 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEe-CCCCCCHHHHHHHHHHHHHh----------------h------hcCCeEEEEec-
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHVVDF----------------K------KSGKFIIGYVP- 219 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~I-nSpGG~~~~seeI~~~I~~l----------------r------~s~KpVva~v~- 219 (537)
.+++.+.|.++.+ .+++++||++ +.|||.+..+..|...+..- . .-..|+++.++
T Consensus 368 ~~d~~~~l~~l~~-~~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVLVN~ 446 (667)
T PRK11186 368 TDDVKKQLQKLEK-QNVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLVDR 446 (667)
T ss_pred HHHHHHHHHHHHH-CCCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEEeCC
Confidence 5688888888765 5799999999 45788888887777764210 0 01459999997
Q ss_pred CcchhhhHHhhc
Q 009327 220 VCGEKEYYLACA 231 (537)
Q Consensus 220 ~AaSgGY~IAsa 231 (537)
..||++=.+|.+
T Consensus 447 ~SASASEIfA~a 458 (667)
T PRK11186 447 YSASASEIFAAA 458 (667)
T ss_pred CCccHHHHHHHH
Confidence 567776565554
No 336
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=57.20 E-value=1.3e+02 Score=33.17 Aligned_cols=115 Identities=10% Similarity=0.107 Sum_probs=64.0
Q ss_pred ceEEEEEeCCCC--CCHHHHHHHHHHHHHhhh---------cCCeEEEEecCc--chhhhHHhhccCeeEecCCCeeEEe
Q 009327 180 IVGIYLHIEPLS--CGWGKVEEIRRHVVDFKK---------SGKFIIGYVPVC--GEKEYYLACACEELYAPPSAYFSLY 246 (537)
Q Consensus 180 IkaIVL~InSpG--G~~~~seeI~~~I~~lr~---------s~KpVva~v~~A--aSgGY~IAsaaD~I~a~p~s~iGsi 246 (537)
...|+...++.| |..... .+...|.+++. .++||++-+..+ .+....+++.||-|.+ |++
T Consensus 183 aD~Ivve~EAGGHtg~~~~~-~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~------GT~ 255 (444)
T TIGR02814 183 ADDICVEADSGGHTDNRPLV-VLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVT------GSV 255 (444)
T ss_pred CcEEEEeccCCCCCCCCcHH-HHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEe------ccH
Confidence 467888877765 322222 33333332221 156899998743 4556778889998886 333
Q ss_pred ccc----ccccchhhHhhh----------------cCcceEEEEecc------------ccccCCcccCCCCCHHHHHHH
Q 009327 247 GLT----VQASFLGGVLEK----------------VGIEPQVQRIGK------------YKSAGDQLTRKTMSEENCEML 294 (537)
Q Consensus 247 Gv~----~~~~~~~~ll~k----------------~GI~~~~v~~G~------------yKsa~~~~t~~~~s~e~~e~l 294 (537)
-+. .....+|++|-+ +|+++++.+.|. |+...+ .+.+.+.+|+++
T Consensus 256 flat~Esgas~~~K~~L~~a~~~DT~~ap~~dmfe~G~~~qvlkrg~~f~~ra~kl~~ly~~~~s---~~~i~~~~~~~~ 332 (444)
T TIGR02814 256 NQCTVEAGTSDNVKKLLAKADVQDTAYAPAGDMFELGVKLQVLKRGTLFPARANKLYELYRRYDS---LEALPAATRAQL 332 (444)
T ss_pred HHhCccccCCHHHHHHHHhCCCcCeEEecCccccccCceeeeeccccCcHHHHHHHHHHHHhCCC---hhhCCHHHHHHH
Confidence 221 223345555432 488888888775 222211 245667766666
Q ss_pred HH-----HHHHHHHH
Q 009327 295 TA-----LLDNIYGN 304 (537)
Q Consensus 295 q~-----~l~~~y~~ 304 (537)
++ .++++|++
T Consensus 333 e~~~f~~~~~~vw~~ 347 (444)
T TIGR02814 333 EKKYFKRSLDDVWEE 347 (444)
T ss_pred HHHHhcCCHHHHHHH
Confidence 53 34555555
No 337
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=57.00 E-value=58 Score=32.91 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=51.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-CCCCchHHHHHHHHHHHHh-------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRLL------- 458 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-SpGG~~~~s~~i~~~i~~~------- 458 (537)
.++|+.|+|..-- ...+.+.++++....+++++||.+- -+||.+ +..+...+...
T Consensus 86 ~~~igYi~i~~~~---------------~~~~~~~~~~~~~~~~~~glIiDlR~N~GG~~--~~~l~~~~~~~~~~~~~~ 148 (266)
T cd07562 86 DGRIGYVHIPDMG---------------DDGFAEFLRDLLAEVDKDGLIIDVRFNGGGNV--ADLLLDFLSRRRYGYDIP 148 (266)
T ss_pred CCcEEEEEeCCCC---------------hHHHHHHHHHHHhcCCCceEEEEecCCCCCcH--HHHHHHHhCCCceEEEcc
Confidence 4789999987641 1224444555554444899999653 356662 23333332110
Q ss_pred c------------CCCCEEEEECchhhHHHHHHHHhc
Q 009327 459 S------------ESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 459 ~------------~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
+ -.+||++.+++.++|+|-.++.++
T Consensus 149 r~~~~~~~~p~~~~~~pv~vL~~~~t~SaaE~~a~~l 185 (266)
T cd07562 149 RGGGKPVTYPSGRWRGPVVVLVNEGSASDAEIFAYGF 185 (266)
T ss_pred CCCCCCCCCcccccCCCEEEEECCCCCchHHHHHHHH
Confidence 0 158999999999999999999887
No 338
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=56.17 E-value=25 Score=35.50 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhc---CCCCEEEEECchhh
Q 009327 416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS---ESKPVIASMSDVAA 473 (537)
Q Consensus 416 ~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~---~~kPVIA~v~G~Aa 473 (537)
-++++.|+-+.+|+..++|||-.. -||... +...+-+++.. ..|||+.++-|..|
T Consensus 217 T~FID~L~vFl~D~~t~GIiliGE-IGG~AE--e~AA~flk~~nSg~~~kPVvsFIAG~tA 274 (329)
T KOG1255|consen 217 TNFIDCLEVFLEDPETEGIILIGE-IGGSAE--EEAAEFLKEYNSGSTAKPVVSFIAGVTA 274 (329)
T ss_pred ccHHHHHHHHhcCcccceEEEEec-cCChhh--HHHHHHHHHhccCCCCCceeEEeecccC
Confidence 358999999999999999999654 356543 23344555543 27999999988764
No 339
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=55.77 E-value=92 Score=27.19 Aligned_cols=71 Identities=10% Similarity=0.209 Sum_probs=48.6
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCC-eEEE
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGK-FIIG 216 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~K-pVva 216 (537)
+.+.++++.|.|+.... ..+.+.+.+.....+.+.|||++..-- =+-.....|...++.+|..|. ++++
T Consensus 12 ~~~~vl~l~G~lD~~~a---------~~~~e~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~ 82 (117)
T COG1366 12 DGILVLPLIGELDAARA---------PALKETLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLV 82 (117)
T ss_pred ceEEEEEeeEEEchHHH---------HHHHHHHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEE
Confidence 34489999999988743 577888876666666777999887643 234446667777788877654 3433
Q ss_pred Ee
Q 009327 217 YV 218 (537)
Q Consensus 217 ~v 218 (537)
-+
T Consensus 83 ~i 84 (117)
T COG1366 83 GI 84 (117)
T ss_pred eC
Confidence 33
No 340
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=55.57 E-value=86 Score=26.94 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCC--------CCeEEEEeCCC-CCchHHHHHHHHHHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR--------YKAAIIRIDSP-GGDALASDLMWREIRL 457 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~--------vraVVL~i~Sp-GG~~~~s~~i~~~i~~ 457 (537)
.+.+.+++++|++.. ...+.+.+.+.++..... .+.|||.+..- .=+..+...+.+..+.
T Consensus 7 ~~~v~ii~~~g~l~f-----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~ 75 (117)
T PF01740_consen 7 HDGVLIIRLDGPLFF-----------ANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKE 75 (117)
T ss_dssp ETTEEEEEEESEESH-----------HHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHH
T ss_pred ECCEEEEEEeeEEEH-----------HHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 478999999999975 457889999988887665 79999976421 1233444555555555
Q ss_pred hc
Q 009327 458 LS 459 (537)
Q Consensus 458 ~~ 459 (537)
++
T Consensus 76 ~~ 77 (117)
T PF01740_consen 76 LR 77 (117)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 341
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=55.38 E-value=63 Score=30.18 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEE
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIA 466 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA 466 (537)
+|++.|.++.+ ++.+|||. ||+...-|-.+.++++.+ ++|+|=
T Consensus 56 elId~I~~a~~--~~dgiiIN---pga~THtSiAl~DAl~~~--~~P~VE 98 (146)
T PRK05395 56 ELIDRIHEARD--GADGIIIN---PGAYTHTSVALRDALAAV--SIPVIE 98 (146)
T ss_pred HHHHHHHhccc--CCcEEEEC---chHHHHHHHHHHHHHHcC--CCCEEE
Confidence 45555555532 34555542 677777788888888877 788763
No 342
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=55.15 E-value=10 Score=40.38 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCC-------------CCC----HHHHHHHHHHHHHhhhcCCeEEEEecCcch-hh
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPL-------------SCG----WGKVEEIRRHVVDFKKSGKFIIGYVPVCGE-KE 225 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSp-------------GG~----~~~seeI~~~I~~lr~s~KpVva~v~~AaS-gG 225 (537)
..++...|++...+..|.|..+.-..+ .|. .+.--++.+.|.....++.|+.+.++.+.. |+
T Consensus 84 k~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk 163 (380)
T KOG1683|consen 84 KHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGK 163 (380)
T ss_pred HHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCC
Confidence 347888888888888888877633222 121 122223333444444577777777775443 44
Q ss_pred --hHHhhccCeeEec--CCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 009327 226 --YYLACACEELYAP--PSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (537)
Q Consensus 226 --Y~IAsaaD~I~a~--p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~ 301 (537)
..++-+|+..++- |.-.+|++ .++..+|+.+ + .+|.+
T Consensus 164 ~~vvVg~c~gf~v~r~l~~y~~~~~----------~~l~e~g~~p--------------~---------------~iD~~ 204 (380)
T KOG1683|consen 164 LPVVVGNCCGFRVNRLLPPYTIGLN----------ELLLEIGADP--------------W---------------LIDSL 204 (380)
T ss_pred ccEEeccCCceEEEecccHHHHHHH----------HHHHHcCCCH--------------H---------------HHHHH
Confidence 8888889888764 32222222 2222222221 1 22222
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecC--chHHHHHHHHHhCCCC
Q 009327 302 YGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLY--DDEVISMLKERLGVQK 361 (537)
Q Consensus 302 y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~--~dd~i~~l~~~~g~~~ 361 (537)
-..| |... .-..+.++.-|+..+|++.||+|+++. .+++.+. .++|++.
T Consensus 205 ~t~f--------Gf~~-g~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~--~~~g~kT 255 (380)
T KOG1683|consen 205 ITKF--------GFRV-GERALADGVGFDVAEALAVGLGDEIGPRIEEELLEK--GRAGIKT 255 (380)
T ss_pred HHhc--------Cccc-cHHHHhhccCccHHHHHhhccchhccchhHHHHHHH--Hhhhhhc
Confidence 2222 2221 112356788899999999999999998 4444433 3456543
No 343
>PRK06091 membrane protein FdrA; Validated
Probab=55.12 E-value=22 Score=40.03 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhhHH
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASG 475 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aasg 475 (537)
.+.+.|+.+.+||+.++|++.+.-|+-.+. +.+.++.+++ .||||+..-|.-.-|
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~kppaE~v~--~~fl~aar~~--~KPVVvlk~Grs~~g 293 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSKPPAEAVR--LKIINAMKAT--GKPVVALFLGYTPAV 293 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecCchHHH--HHHHHHHhhC--CCCEEEEEecCCchh
Confidence 477888999999999999999865543333 3555666555 899999988765433
No 344
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=53.92 E-value=41 Score=34.09 Aligned_cols=59 Identities=5% Similarity=-0.058 Sum_probs=43.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe-CCCCCCHHHHHHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHVVD 206 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I-nSpGG~~~~seeI~~~I~~ 206 (537)
..++|+.|.++.-... ..+++.++++++++. +++++||++ +.+||.+..+..|...+..
T Consensus 62 ~~~~IGYi~i~~F~~~----------~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~ 121 (256)
T cd07561 62 GGKKVGYLVYNSFTSG----------YDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAP 121 (256)
T ss_pred CCCcEEEEEECccccc----------hHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcC
Confidence 4568999998532111 346788888888753 799999999 4588888888888888773
No 345
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=52.71 E-value=48 Score=34.09 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=51.3
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH---HHHHHHHHHhcCCCCEEEEECchhhHHHHHHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS---DLMWREIRLLSESKPVIASMSDVAASGGYYMA 480 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s---~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA 480 (537)
++...+.+.++++-+-.||.|++|++.+. ||-+.++ ..|..+.+.+.-..|.++-.+|.-.-.+-.|.
T Consensus 317 GgV~EdqV~~Af~ilTaDPkVk~iLvNiF--GGIVNCAtIANGiv~A~~kl~LnVPlVVRLEGTNV~~A~~Il 387 (412)
T KOG1447|consen 317 GGVKEDQVYQAFKILTADPKVKAILVNIF--GGIVNCATIANGIVKACRKLELNVPLVVRLEGTNVQEAQKIL 387 (412)
T ss_pred CcccHHHHHHHhhhhccCCceeEEEEehh--cceehhHhHhhHHHHHHHhhcCCCcEEEEEcCCCHHHHHHHH
Confidence 45566788899999999999999999886 7887764 34555555554589999999987766555443
No 346
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=52.64 E-value=39 Score=36.15 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHh-hhcC--CeEEEEe
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDF-KKSG--KFIIGYV 218 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~l-r~s~--KpVva~v 218 (537)
..+.+.+.+.|+...+||++++|++ +.+||.. ..+.+.+.|.++ ++.+ |||++..
T Consensus 292 ~a~~~~~~~al~~l~~dp~vd~ilv--~i~gg~~-~~~~va~~i~~a~~~~~~~kPvvv~~ 349 (386)
T TIGR01016 292 GASAERVREALKLVLSDKSVKVVFI--NIFGGIT-RCDLVAKGLVEALKEVGVNVPVVVRL 349 (386)
T ss_pred CCCHHHHHHHHHHHHcCCCCCEEEE--ECCCCCC-CHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 3567889999999999999999996 4444432 224455555543 3344 8986655
No 347
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=52.15 E-value=48 Score=34.43 Aligned_cols=74 Identities=16% Similarity=0.044 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHhcCC---CceEEEEEeCCCCCCHH-----HHHHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDP---RIVGIYLHIEPLSCGWG-----KVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~---~IkaIVL~InSpGG~~~-----~seeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~ 234 (537)
...+|+++|+++...+ .+.+||| +- .||+.. --+++.++|.. ++.|||+-++.-.-- ...=..||.
T Consensus 56 A~~~I~~al~~~~~~~~~~~~Dviii-~R-GGGs~eDL~~FN~e~varai~~---~~~PvisaIGHe~D~-ti~D~vAd~ 129 (319)
T PF02601_consen 56 AAASIVSALRKANEMGQADDFDVIII-IR-GGGSIEDLWAFNDEEVARAIAA---SPIPVISAIGHETDF-TIADFVADL 129 (319)
T ss_pred hHHHHHHHHHHHHhccccccccEEEE-ec-CCCChHHhcccChHHHHHHHHh---CCCCEEEecCCCCCc-hHHHHHHHh
Confidence 4679999999998765 5666665 33 345543 45788888884 589999887532111 233477899
Q ss_pred eEecCCCe
Q 009327 235 LYAPPSAY 242 (537)
Q Consensus 235 I~a~p~s~ 242 (537)
....|++.
T Consensus 130 ra~TPtaa 137 (319)
T PF02601_consen 130 RAPTPTAA 137 (319)
T ss_pred hCCCHHHH
Confidence 99999875
No 348
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=51.43 E-value=87 Score=26.62 Aligned_cols=71 Identities=21% Similarity=0.336 Sum_probs=40.4
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCC-CCCchHHHHHHHHHHHHhcC--CCCE
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-PGGDALASDLMWREIRLLSE--SKPV 464 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~S-pGG~~~~s~~i~~~i~~~~~--~kPV 464 (537)
+.+.+++++|++.. ...+.+.+.+.........+.|||.... +--+..+...+....+.++. .+.+
T Consensus 9 ~~~~v~~l~G~L~~-----------~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~ 77 (109)
T cd07041 9 DGVLVLPLIGDLDD-----------ERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTI 77 (109)
T ss_pred CCEEEEeeeeeECH-----------HHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEE
Confidence 56899999999864 3456677766444433467899997531 11122333445555555432 3444
Q ss_pred EEEEC
Q 009327 465 IASMS 469 (537)
Q Consensus 465 IA~v~ 469 (537)
++-++
T Consensus 78 l~g~~ 82 (109)
T cd07041 78 LTGIR 82 (109)
T ss_pred EEeCC
Confidence 44444
No 349
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=51.11 E-value=78 Score=29.59 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEE
Q 009327 416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIA 466 (537)
Q Consensus 416 ~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA 466 (537)
-+|++.|.++.+ ++.+|||. ||+....|-.+.++++.+ ++|+|=
T Consensus 55 GelId~i~~a~~--~~dgiIIN---pga~THtSiAl~DAl~~~--~~P~VE 98 (146)
T PRK13015 55 GELIDWIHEARG--DVAGIVIN---PGAYTHTSVAIRDALAAL--ELPVIE 98 (146)
T ss_pred HHHHHHHHHhhh--cCCEEEEc---chHHhhhHHHHHHHHHcC--CCCEEE
Confidence 356666666632 34565552 677777788888888877 777763
No 350
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=51.07 E-value=79 Score=29.35 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEE
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIA 466 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA 466 (537)
--+|++.|.++.+ ++.+|||. ||+...-|-.+.++++.+ .+|+|=
T Consensus 52 Egelid~I~~a~~--~~dgiIIN---pga~THtSvAi~DAl~~~--~~P~VE 96 (140)
T cd00466 52 EGELIDWIHEARD--GADGIIIN---PGAYTHTSIALRDALAAV--SIPVIE 96 (140)
T ss_pred HHHHHHHHHHhhc--cCcEEEEc---chHHHHHHHHHHHHHHcC--CCCEEE
Confidence 3467777777643 35666663 777777888899999877 778763
No 351
>PRK02929 L-arabinose isomerase; Provisional
Probab=50.45 E-value=96 Score=34.75 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec---Cc--c------------h---
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP---VC--G------------E--- 223 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~---~A--a------------S--- 223 (537)
.+++.+.++++.+|+++.+|++.+-+++.+-... +.++ ..+|||+-+.- .. . |
T Consensus 57 ~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~i----~~~~---~l~~PvL~~~~Q~~~e~p~~~id~d~m~lnqs~~G 129 (499)
T PRK02929 57 PDEITAVCREANYDDNCAGVITWMHTFSPAKMWI----RGLS---ALQKPLLHLHTQFNAEIPWDTIDMDFMNLNQSAHG 129 (499)
T ss_pred HHHHHHHHHHccccCCCcEEEEccCCCchHHHHH----HHHH---HcCCCEEEEecCCCccCCCCCCCcchhhhhhcccC
Confidence 4678888888888999999999999887442221 2233 34677765542 11 0 0
Q ss_pred ---hhhHHhh---ccCeeEec-----------------------CCCeeEEecccccccchh--h---HhhhcCcceEEE
Q 009327 224 ---KEYYLAC---ACEELYAP-----------------------PSAYFSLYGLTVQASFLG--G---VLEKVGIEPQVQ 269 (537)
Q Consensus 224 ---gGY~IAs---aaD~I~a~-----------------------p~s~iGsiGv~~~~~~~~--~---ll~k~GI~~~~v 269 (537)
.|+.+.= .-..|+.. .+..+|.+|-.+....+. + +-.++|++++.+
T Consensus 130 ~~e~~~il~R~gi~~~~v~G~~~d~~v~~~i~~w~raa~v~~~lr~~rig~~G~~m~~v~vtEgd~~~~~~~fG~~V~~~ 209 (499)
T PRK02929 130 DREFGFIGARLRKQRKVVVGHWQDPEVQERIGAWMRVAAAWQESRHLKVARFGDNMRNVAVTEGDKVEAQIKFGWSVNTW 209 (499)
T ss_pred hHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEECCchhhcccCcchHHHHHHHhCcEEEEe
Confidence 0111110 01233333 356788887655433332 3 348899999999
Q ss_pred EeccccccCCcccCCCCCHHHHHHHHHHHHHHH
Q 009327 270 RIGKYKSAGDQLTRKTMSEENCEMLTALLDNIY 302 (537)
Q Consensus 270 ~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y 302 (537)
-.++.....+ .+++++.+...+.+.+.|
T Consensus 210 ~~~el~~~~~-----~v~d~ev~~~~~e~~~~~ 237 (499)
T PRK02929 210 GVGDLVEVVN-----AVSDGDVDALVDEYESLY 237 (499)
T ss_pred cHHHHHHHHH-----hCCHHHHHHHHHHHHhhc
Confidence 9888765443 346664444444444444
No 352
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=50.32 E-value=40 Score=36.40 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhh-h--cCCeEEEEe
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFK-K--SGKFIIGYV 218 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr-~--s~KpVva~v 218 (537)
..+.+.+.+.|+...+||+|++|++.+- ||- ...+++.+.|.+.. + .+|||++..
T Consensus 292 ~a~~e~~~~aL~~ll~Dp~VdaVlv~i~--ggi-~~~~~vA~~Ii~a~~~~~~~kPvvv~l 349 (392)
T PRK14046 292 GASPERVAKAFRLVLSDRNVKAILVNIF--AGI-NRCDWVAEGVVQAAREVGIDVPLVVRL 349 (392)
T ss_pred CCCHHHHHHHHHHHHcCCCCCEEEEEcC--CCC-CCHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 4567889999999999999999997444 432 22255555555432 2 578986654
No 353
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=49.93 E-value=87 Score=29.11 Aligned_cols=45 Identities=31% Similarity=0.477 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEE
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIA 466 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA 466 (537)
--+|++.|.++.+ ++.+|||. ||+...-|-.+.+++... .+|+|=
T Consensus 52 EGelId~i~~a~~--~~dgiIIN---pga~THtSiAl~DAl~~~--~~P~vE 96 (141)
T TIGR01088 52 EGQLIDKIHEAEG--QYDGIIIN---PGALTHTSVALRDALAAV--SLPVVE 96 (141)
T ss_pred HHHHHHHHHhccc--cCCEEEEc---ChHHhhhHHHHHHHHHcC--CCCEEE
Confidence 3467777776643 35666663 788877888899999877 778763
No 354
>PLN02235 ATP citrate (pro-S)-lyase
Probab=49.81 E-value=95 Score=34.01 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=58.9
Q ss_pred ccchHHHHHHHHHHHH----hcCCCCeEEEEeCCCCCchHH---H---HHHHHHHHHhc-----CCCCEEEEECchhhHH
Q 009327 411 SGIIGEQLIEKIRKVR----ESKRYKAAIIRIDSPGGDALA---S---DLMWREIRLLS-----ESKPVIASMSDVAASG 475 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~----~d~~vraVVL~i~SpGG~~~~---s---~~i~~~i~~~~-----~~kPVIA~v~G~Aasg 475 (537)
++...+.+.++++-+. .|+++++++|.|. ||-..+ + +.|.++++++. .++|||+-..|.-.=-
T Consensus 306 G~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIf--GGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~ee 383 (423)
T PLN02235 306 GAPNEEEVLQYARVVIDCATANPDGRKRALLIG--GGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQK 383 (423)
T ss_pred CCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEe--cccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHH
Confidence 4567888889888886 7999999999885 665432 3 56777777763 2689999999998888
Q ss_pred HHHHHH----hc--CeEEEcCCc
Q 009327 476 GYYMAM----AA--GTILAENLT 492 (537)
Q Consensus 476 G~~lA~----a~--D~i~A~p~a 492 (537)
|.-+.- -+ ++.+..|.+
T Consensus 384 G~~il~e~~~~~gl~i~~~~~~~ 406 (423)
T PLN02235 384 GLAKMRALGEEIGVPIEVYGPEA 406 (423)
T ss_pred HHHHHHHhHHhcCCcEEEeCCCC
Confidence 886654 33 356666544
No 355
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=49.59 E-value=1.2e+02 Score=25.38 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=39.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCC-CchHHHHHHHHHHHHhcC-CCCE
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPG-GDALASDLMWREIRLLSE-SKPV 464 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpG-G~~~~s~~i~~~i~~~~~-~kPV 464 (537)
.+.+.+++++|++.. ...+.+.+.+.++...+..+.|||....-. =+..+...+....+.+++ ++.+
T Consensus 6 ~~~v~ii~~~G~l~f-----------~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l 74 (100)
T cd06844 6 VDDYWVVRLEGELDH-----------HSVEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQF 74 (100)
T ss_pred ECCEEEEEEEEEecH-----------hhHHHHHHHHHHHHHhCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEE
Confidence 356999999999865 345667777765555566889999753111 122233444444554432 4444
No 356
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=48.88 E-value=39 Score=28.70 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=30.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI 438 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i 438 (537)
.+.+.++++.|++.. ...+.+.+.+.++-..++.+.+||..
T Consensus 6 ~~~~~vi~l~G~L~f-----------~~~~~~~~~l~~~~~~~~~~~vilDl 46 (106)
T TIGR02886 6 KGDVLIVRLSGELDH-----------HTAERVRRKIDDAIERRPIKHLILNL 46 (106)
T ss_pred ECCEEEEEEecccch-----------hhHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 367999999999964 34567777777765445678999964
No 357
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=48.59 E-value=32 Score=30.31 Aligned_cols=48 Identities=6% Similarity=0.027 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 169 ENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 169 ~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
+.+.-+.++++|.||||..+ ++......++-+.|+.. ..+.||..+++
T Consensus 28 d~~~~i~~~~~i~avvi~~d--~~~~~~~~~ll~~i~~~-~~~iPVFl~~~ 75 (115)
T PF03709_consen 28 DALAIIESFTDIAAVVISWD--GEEEDEAQELLDKIRER-NFGIPVFLLAE 75 (115)
T ss_dssp HHHHHHHCTTTEEEEEEECH--HHHHHHHHHHHHHHHHH-STT-EEEEEES
T ss_pred HHHHHHHhCCCeeEEEEEcc--cccchhHHHHHHHHHHh-CCCCCEEEEec
Confidence 55666778999999999999 43444455566666654 45789999997
No 358
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=48.47 E-value=53 Score=36.31 Aligned_cols=110 Identities=10% Similarity=0.108 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCC----CchHHHHHHHHHHH-HhcCCCCEEEEE-CchhhH----HHHHHHHhcC
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPG----GDALASDLMWREIR-LLSESKPVIASM-SDVAAS----GGYYMAMAAG 484 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpG----G~~~~s~~i~~~i~-~~~~~kPVIA~v-~G~Aas----gG~~lA~a~D 484 (537)
..+|.+.+.++.++-+.++|++...|+- -|+ +.+...+. ++ ++|||.+- +|+..+ -|+.|+.-++
T Consensus 82 ~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDl---e~va~~~~~~~--gipVV~v~~~Gf~~~~tqg~d~~Laa~~~ 156 (457)
T CHL00073 82 YEELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDL---EGMAPKLEAEI--GIPIVVARANGLDYAFTQGEDTVLAAMAH 156 (457)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCH---HHHHHHHHHhh--CCCEEEEeCCCccCcCCcchhHHHHHhHH
Confidence 4678899999999888999999877763 334 23333333 33 89998876 466633 5555555544
Q ss_pred e----EEEcCC-----------------------ceeee---eeccc--CcccHHHHHHHhCCceE-eecccCCcccC
Q 009327 485 T----ILAENL-----------------------TLTGS---IGVVT--GKFNLGKLYEKIGFNKE-IISRGKYAEVL 529 (537)
Q Consensus 485 ~----i~A~p~-----------------------a~~Gs---IGV~~--~~~~~~~L~~k~G~~~~-~i~~g~~~~~~ 529 (537)
. .+-+.. ....+ +|-++ ....+..+++++|+++. .+..+.|.++-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp~~~~~eL~ 234 (457)
T CHL00073 157 RCPEQEVSTSESKETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLPSTVASQLTLELKRQGIKVSGWLPSQRYTDLP 234 (457)
T ss_pred hhhhhhcCccccccccccccccccccccccccccCCCCcEEEEEecCcccHHHHHHHHHHcCCeEeEEeCCCCHHHHH
Confidence 1 111111 11223 34333 12556788999999995 34444555543
No 359
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=47.95 E-value=95 Score=33.58 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHh----cCCCCEEEEECchhhHHHHHHHH
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLL----SESKPVIASMSDVAASGGYYMAM 481 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~----~~~kPVIA~v~G~AasgG~~lA~ 481 (537)
...+.+.++++.+.+|+++++|++-+. ||.... +.+.+.|.+. ..+|||++.+.|...-.+.-+.-
T Consensus 293 a~~e~~~~aL~~ll~Dp~VdaVlv~i~--ggi~~~-~~vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~~~~iL~ 362 (392)
T PRK14046 293 ASPERVAKAFRLVLSDRNVKAILVNIF--AGINRC-DWVAEGVVQAAREVGIDVPLVVRLAGTNVEEGRKILA 362 (392)
T ss_pred CCHHHHHHHHHHHHcCCCCCEEEEEcC--CCCCCH-HHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHH
Confidence 567889999999999999999997543 554333 3344444332 13799988887755555555433
No 360
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=47.30 E-value=51 Score=35.35 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhh---cCCeEEEEe
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKK---SGKFIIGYV 218 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~---s~KpVva~v 218 (537)
....+.+.+.|+...+||++++|++.+- |+ ....+.+.+.|.++.+ .+||+++..
T Consensus 292 ~~~~e~~~~aL~~l~~d~~vd~vlv~~~--~~-~~~~~~va~~i~~~~~~~~~~kPvv~~~ 349 (388)
T PRK00696 292 GATAERVAEAFKIILSDPNVKAILVNIF--GG-ITRCDVIAEGIIAAVKEVGVTVPLVVRL 349 (388)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEEeC--CC-CCCHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 3567788999999999999999997544 32 2223556566555433 578986654
No 361
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=45.32 E-value=54 Score=35.10 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCCcEEEEEEecccccC--------CCCCCCCC---ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHH
Q 009327 385 GGGDQIAVIRASGSISRV--------RSPLSLSS---SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWR 453 (537)
Q Consensus 385 ~~~~~VavI~i~G~I~~~--------~~~~~~~~---~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~ 453 (537)
.-++.|++|.-.+-...- .....|.. .....+.+.++++.+.+|+++++|++.+ +||.... +.+.+
T Consensus 254 ~l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a~~~~~~~al~~l~~dp~vd~ilv~i--~gg~~~~-~~va~ 330 (386)
T TIGR01016 254 ALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGASAERVREALKLVLSDKSVKVVFINI--FGGITRC-DLVAK 330 (386)
T ss_pred ccCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCCCHHHHHHHHHHHHcCCCCCEEEEEC--CCCCCCH-HHHHH
Confidence 345788888755444211 01111222 2355688999999999999999999744 3554433 33444
Q ss_pred HH----HHhcCCCCEEEEECchhhHHHHH
Q 009327 454 EI----RLLSESKPVIASMSDVAASGGYY 478 (537)
Q Consensus 454 ~i----~~~~~~kPVIA~v~G~AasgG~~ 478 (537)
.| ++...+|||++...|...-.+.-
T Consensus 331 ~i~~a~~~~~~~kPvvv~~~g~~~~~~~~ 359 (386)
T TIGR01016 331 GLVEALKEVGVNVPVVVRLEGTNVEEGKK 359 (386)
T ss_pred HHHHHHHhcCCCCcEEEEeCCccHHHHHH
Confidence 44 33311389988887744433433
No 362
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=45.20 E-value=43 Score=30.59 Aligned_cols=68 Identities=9% Similarity=-0.074 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHHHhh--------------------------hcCCeEEE
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFK--------------------------KSGKFIIG 216 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~~lr--------------------------~s~KpVva 216 (537)
.+.+.+.++++.+ .+++++||++-. +||+...+..+...+..-. .-.+||+.
T Consensus 17 ~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 95 (169)
T PF03572_consen 17 DEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPVYV 95 (169)
T ss_dssp HHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEEEE
T ss_pred HHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCEEE
Confidence 3566666666665 678999999955 7888887777766654210 13568998
Q ss_pred Eec-CcchhhhHHhhcc
Q 009327 217 YVP-VCGEKEYYLACAC 232 (537)
Q Consensus 217 ~v~-~AaSgGY~IAsaa 232 (537)
.++ .++|++=+++.+.
T Consensus 96 L~~~~t~Saae~fa~~l 112 (169)
T PF03572_consen 96 LTDENTASAAEIFASAL 112 (169)
T ss_dssp EE-TTBBTHHHHHHHHH
T ss_pred EeCCCCCChhHHHHHHH
Confidence 887 6788776666553
No 363
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=44.90 E-value=1e+02 Score=31.12 Aligned_cols=81 Identities=6% Similarity=-0.031 Sum_probs=46.6
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHHHh-------h
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDF-------K 208 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~~l-------r 208 (537)
..++|+.|.+..- +...+.+.++++....+++++||++-. +||.+ +..|...+... |
T Consensus 85 ~~~~igYi~i~~~-------------~~~~~~~~~~~~~~~~~~~glIiDlR~N~GG~~--~~~l~~~~~~~~~~~~~~r 149 (266)
T cd07562 85 SDGRIGYVHIPDM-------------GDDGFAEFLRDLLAEVDKDGLIIDVRFNGGGNV--ADLLLDFLSRRRYGYDIPR 149 (266)
T ss_pred cCCcEEEEEeCCC-------------ChHHHHHHHHHHHhcCCCceEEEEecCCCCCcH--HHHHHHHhCCCceEEEccC
Confidence 3588999999543 112333444444433338999999955 56663 33444333210 0
Q ss_pred h-----------cCCeEEEEec-CcchhhhHHhhcc
Q 009327 209 K-----------SGKFIIGYVP-VCGEKEYYLACAC 232 (537)
Q Consensus 209 ~-----------s~KpVva~v~-~AaSgGY~IAsaa 232 (537)
. -.+||+..++ .++|++=.++.+.
T Consensus 150 ~~~~~~~~p~~~~~~pv~vL~~~~t~SaaE~~a~~l 185 (266)
T cd07562 150 GGGKPVTYPSGRWRGPVVVLVNEGSASDAEIFAYGF 185 (266)
T ss_pred CCCCCCCCcccccCCCEEEEECCCCCchHHHHHHHH
Confidence 0 1478988887 5777776666553
No 364
>PLN02235 ATP citrate (pro-S)-lyase
Probab=43.75 E-value=50 Score=36.11 Aligned_cols=57 Identities=12% Similarity=-0.008 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHh----cCCCceEEEEEeCCCCCCHHHH-------HHHHHHHHHhh----hcCCeEEEEec
Q 009327 160 SGLSLPQICENFVKAA----YDPRIVGIYLHIEPLSCGWGKV-------EEIRRHVVDFK----KSGKFIIGYVP 219 (537)
Q Consensus 160 ~~~s~~~l~~~L~~A~----~D~~IkaIVL~InSpGG~~~~s-------eeI~~~I~~lr----~s~KpVva~v~ 219 (537)
++.+.+++.++++-.. .||++|+|++.|= |+.... +-|.++++++. ..++|||+-..
T Consensus 306 G~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIf---GGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~ 377 (423)
T PLN02235 306 GAPNEEEVLQYARVVIDCATANPDGRKRALLIG---GGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRG 377 (423)
T ss_pred CCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEe---cccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECC
Confidence 5688999999998887 7999999999983 333322 45666666653 14678887664
No 365
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=43.42 E-value=72 Score=32.17 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=68.6
Q ss_pred CCceEEEEEeCCC--------CCCHHHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhh-ccCeeEecCCCeeEEec
Q 009327 178 PRIVGIYLHIEPL--------SCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLAC-ACEELYAPPSAYFSLYG 247 (537)
Q Consensus 178 ~~IkaIVL~InSp--------GG~~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAs-aaD~I~a~p~s~iGsiG 247 (537)
+.-+-|||.+.+- |-+....+.+.+.|+++.+.+..|-..+. .-.--||..+. ..|+..++- +|...
T Consensus 3 ~~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~---mGmla 79 (238)
T COG0528 3 PKYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADY---MGMLA 79 (238)
T ss_pred cceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhH---HHHHH
Confidence 3456788887652 23677888999999999888887755553 22222333322 456665543 44445
Q ss_pred ccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 248 LTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 248 v~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
..+....+...|+++||...+...-.+....+|++
T Consensus 80 TvmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~ 114 (238)
T COG0528 80 TVMNALALQDALERLGVDTRVQSAIAMPQVAEPYS 114 (238)
T ss_pred HHHHHHHHHHHHHhcCCcceecccccCccccCccC
Confidence 55666668999999999999998888876667764
No 366
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=42.79 E-value=75 Score=34.27 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC--CCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 160 SGLSLPQICENFVKAAYDPRIVGIYLHIEPL--SCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 160 ~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp--GG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
++.+.+.+.++++-...||++|+|.+.|=+. -|+. .++-|.++++++. .++|+|+-..
T Consensus 290 GgA~~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~-vA~GIi~Al~e~~-~~vPlVVRL~ 349 (387)
T COG0045 290 GGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDE-VAEGIIAALKEVG-VNVPLVVRLE 349 (387)
T ss_pred CCCCHHHHHHHHHHHhcCCCccEEEEEEccCcCccHH-HHHHHHHHHHhcC-CCCCEEEEcC
Confidence 6788999999999999999999999887432 1222 3444555555542 4688887664
No 367
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=42.59 E-value=1.1e+02 Score=30.34 Aligned_cols=66 Identities=14% Similarity=-0.059 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeC-CCCCCHHHHHHHHHHHHH--h----------------------------hhcCCe
Q 009327 165 PQICENFVKAAYDPRIVGIYLHIE-PLSCGWGKVEEIRRHVVD--F----------------------------KKSGKF 213 (537)
Q Consensus 165 ~~l~~~L~~A~~D~~IkaIVL~In-SpGG~~~~seeI~~~I~~--l----------------------------r~s~Kp 213 (537)
+.+-+.+++.++. +++||++- .+||....+..|...+.. - ....+|
T Consensus 83 ~~~~~~~~~l~~~---~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 159 (250)
T cd07563 83 ALLDEALDKLADT---DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKP 159 (250)
T ss_pred HHHHHHHHHhcCC---CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCC
Confidence 4455555555533 89999994 477888777777776641 0 012468
Q ss_pred EEEEec-CcchhhhHHhhccC
Q 009327 214 IIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 214 Vva~v~-~AaSgGY~IAsaaD 233 (537)
|+..++ ..+|++=.++....
T Consensus 160 v~vL~~~~T~SaaE~~a~~lk 180 (250)
T cd07563 160 VYVLTSPVTFSAAEEFAYALK 180 (250)
T ss_pred EEEEeCCCcCcHHHHHHHHHH
Confidence 888886 56777666666543
No 368
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=42.18 E-value=1.7e+02 Score=27.20 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=17.8
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCEEE
Q 009327 441 PGGDALASDLMWREIRLLSESKPVIA 466 (537)
Q Consensus 441 pGG~~~~s~~i~~~i~~~~~~kPVIA 466 (537)
||+.-.-|-.+.++++.. ..|||=
T Consensus 74 pga~THTSvAlrDAi~av--~iP~vE 97 (146)
T COG0757 74 PGAYTHTSVALRDAIAAV--SIPVVE 97 (146)
T ss_pred CccchhhHHHHHHHHHhc--CCCEEE
Confidence 666666677888888877 677763
No 369
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=41.64 E-value=41 Score=31.19 Aligned_cols=45 Identities=27% Similarity=0.435 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEE
Q 009327 416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIAS 467 (537)
Q Consensus 416 ~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~ 467 (537)
.+|++.|.++.++ +.++||. ||+.-..+-.+.++++.+ .+|+|=.
T Consensus 54 Gelid~I~~a~~~--~dgiIIN---pga~thtS~Ai~DAl~~~--~~P~vEV 98 (140)
T PF01220_consen 54 GELIDWIHEARDD--VDGIIIN---PGAYTHTSIAIRDALKAI--SIPVVEV 98 (140)
T ss_dssp HHHHHHHHHHTCT--TSEEEEE----GGGGHT-HHHHHHHHCC--TS-EEEE
T ss_pred HHHHHHHHHHHhh--CCEEEEc---cchhccccHHHHHHHHcC--CCCEEEE
Confidence 4688888888744 7888885 788888889999999987 8887743
No 370
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=41.35 E-value=73 Score=34.88 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHH-hhh--cCCeEEEEec
Q 009327 160 SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVD-FKK--SGKFIIGYVP 219 (537)
Q Consensus 160 ~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~-lr~--s~KpVva~v~ 219 (537)
++.+.+++.++++-...||+||+|++.|= |+...++.+.+.|-+ +++ .++|+|+-..
T Consensus 326 G~a~~~~v~~a~~ii~~d~~vk~iliNIf---GGI~~cd~iA~gii~a~~~~~~~~pivvRl~ 385 (422)
T PLN00124 326 GNASEQQVVEAFKILTSDDKVKAILVNIF---GGIMKCDVIASGIVNAAKQVGLKVPLVVRLE 385 (422)
T ss_pred CCCCHHHHHHHHHHHhcCCCCcEEEEEec---CCccchHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 56788999999999999999999999875 344444555555443 222 4678877654
No 371
>PF13466 STAS_2: STAS domain
Probab=41.16 E-value=1.5e+02 Score=23.54 Aligned_cols=62 Identities=8% Similarity=0.129 Sum_probs=42.8
Q ss_pred EEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCCeEEE
Q 009327 144 MKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIG 216 (537)
Q Consensus 144 I~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~KpVva 216 (537)
|.+.|+++-. +..++.+.+.++..++ +-|+|++..-. -+.+...-|....+..++.++++..
T Consensus 1 l~l~G~l~~~---------~~~~l~~~l~~~~~~~--~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l 63 (80)
T PF13466_consen 1 LRLSGELDIA---------TAPELRQALQALLASG--RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRL 63 (80)
T ss_pred CEEEEEEeHH---------HHHHHHHHHHHHHcCC--CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3567777655 3457888888877554 77888887754 4566677777777777777776544
No 372
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=41.09 E-value=1.1e+02 Score=34.49 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=48.8
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhc--------CCCceEEEEEeCC-CCCCHHHHHHHHHHHHHhhh
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAY--------DPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKK 209 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~--------D~~IkaIVL~InS-pGG~~~~seeI~~~I~~lr~ 209 (537)
+.+.+++++|++.-.+ .+.+.+.+++..+ ++.++.|||++.. +.-+..+.+.+.+..+++++
T Consensus 454 ~~i~I~r~~g~L~F~n---------a~~~~~~l~~~~~~~~~~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~ 524 (563)
T TIGR00815 454 PGILVYRVDGPLYFAN---------AEDLKDRLLKRIEDETRRELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKA 524 (563)
T ss_pred CCEEEEEcCCceEeCc---------HHHHHHHHHHHHhhhccccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4588888888887653 3566666655433 2357999999976 45577788888888888887
Q ss_pred cCCeEEE
Q 009327 210 SGKFIIG 216 (537)
Q Consensus 210 s~KpVva 216 (537)
.++.++-
T Consensus 525 ~g~~l~l 531 (563)
T TIGR00815 525 RGIQLLL 531 (563)
T ss_pred cCCEEEE
Confidence 7765543
No 373
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=40.21 E-value=41 Score=29.67 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 418 LIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 418 l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
.-+++.-+..++++-||||..+ ++.......+.+.++......||...++-.
T Consensus 26 ~dd~~~~i~~~~~i~avvi~~d--~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 26 TDDALAIIESFTDIAAVVISWD--GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHCTTTEEEEEEECH--HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred hHHHHHHHHhCCCeeEEEEEcc--cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 4455666778899999999987 444455667788888776799999998843
No 374
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=40.16 E-value=1.9e+02 Score=32.26 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecCCC-e
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSA-Y 242 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~s-~ 242 (537)
.+.+.+.++++..|+++.+|++.+-+++.+-..+ +.++ ..+|||+-+.-.. .+..- |-++.. .
T Consensus 51 ~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~i----~~~~---~l~~PvL~~~~q~-~~~l~--------~~sidmd~ 114 (484)
T cd03557 51 PDEILAVCREANADDNCAGVITWMHTFSPAKMWI----AGLT---ALQKPLLHLHTQF-NREIP--------WDTIDMDF 114 (484)
T ss_pred HHHHHHHHHHccccCCccEEEEccCCCchHHHHH----HHHH---HcCCCEEEEccCC-CccCC--------CCCccchH
Confidence 4678888888888899999999999988543222 2233 4589999887432 11100 000000 0
Q ss_pred eEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHH
Q 009327 243 FSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN 300 (537)
Q Consensus 243 iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~ 300 (537)
.+...-....+.+...+.++||.+..+. |... +++..+.+.+++..
T Consensus 115 m~l~qaahG~~e~~~il~R~gi~~~~v~-G~~~-----------d~~~~~~i~~w~ra 160 (484)
T cd03557 115 MNLNQSAHGDREFGFIGSRMRIPRKVVV-GHWQ-----------DPEVHEKIGDWMRA 160 (484)
T ss_pred HhhhhhcCCcHHHHHHHHHcCCCeeEEE-EeCC-----------CHHHHHHHHHHHHH
Confidence 0100000122345678899999987776 5432 55666666666654
No 375
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=40.05 E-value=1.7e+02 Score=24.50 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI 438 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i 438 (537)
.+.+.++++.|.+.. .....+.+.+.++..++..+.|++..
T Consensus 10 ~~~~~vi~~~G~l~~-----------~~~~~~~~~l~~~~~~~~~~~vvidl 50 (108)
T TIGR00377 10 QEGVVIVRLSGELDA-----------HTAPLLREKVTPAAERTGPRPIVLDL 50 (108)
T ss_pred ECCEEEEEEeccccc-----------ccHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 467999999999864 23466777777776556788899953
No 376
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=39.80 E-value=42 Score=35.21 Aligned_cols=161 Identities=11% Similarity=0.017 Sum_probs=67.9
Q ss_pred CceEEEEEeCCCCCCHH----HHHHHHHHHHHhhhcCCeEEEEecCc--chhhhHHhhccCeeEecCCCeeEEecccccc
Q 009327 179 RIVGIYLHIEPLSCGWG----KVEEIRRHVVDFKKSGKFIIGYVPVC--GEKEYYLACACEELYAPPSAYFSLYGLTVQA 252 (537)
Q Consensus 179 ~IkaIVL~InSpGG~~~----~seeI~~~I~~lr~s~KpVva~v~~A--aSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~ 252 (537)
.+.+||+..---||-.. ....+...+.+. ..+||++.+..+ .+-..++++.||=++|- |.+-..-=....
T Consensus 156 G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~--~~iPViaAGGI~dg~~iaaal~lGA~gV~~G--TrFl~t~Es~~~ 231 (330)
T PF03060_consen 156 GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA--VDIPVIAAGGIADGRGIAAALALGADGVQMG--TRFLATEESGAS 231 (330)
T ss_dssp T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH---SS-EEEESS--SHHHHHHHHHCT-SEEEES--HHHHTSTTS-S-
T ss_pred CCCEEEEeccccCCCCCccccceeeHHHHHhhh--cCCcEEEecCcCCHHHHHHHHHcCCCEeecC--CeEEecccccCh
Confidence 57899998654454333 344555555543 469999998754 34577888999988762 211111011224
Q ss_pred cchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHH-HHH----HHHHHHHHHH--HHHHHHhcCCCHHHHHHHHc
Q 009327 253 SFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCE-MLT----ALLDNIYGNW--LDKVSSTKGKRKEDIERFIN 325 (537)
Q Consensus 253 ~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e-~lq----~~l~~~y~~F--~~~Va~~Rg~~~~~v~~~~~ 325 (537)
..+|+.+-+.+- .+++.+..+....-...++++.++-.+ ... ......+..| .+...+. .+.-.
T Consensus 232 ~~~K~~l~~a~~-~dtv~t~~~~G~~~R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~ 302 (330)
T PF03060_consen 232 DAYKQALVDATE-EDTVLTRSFSGRPARVLRNPFTEEWEERSPAPLPYPEQHYLTKDFCLRKAAKEG--------GDVER 302 (330)
T ss_dssp HHHHHHHHHGGT-T-EEEESTTTTS-EEEE-SHHHHHHHHHHHHHCCCHHHHHHHTHHHHHHHHCCH--------T-TTT
T ss_pred HHHHHHHHhCCC-CCEEEEeecccchhhhhCcHHHHHHHhcccccccchhHHHHhhhhHHHHHHHhc--------CCccc
Confidence 557777666543 345555444422222222222222111 000 0001111111 1111111 11223
Q ss_pred cCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 326 DGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 326 g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
+-.|.|+ -.|+|+++.+-.|+++.+.+
T Consensus 303 ~~~~aGq---~~g~i~~i~~a~eiv~~L~~ 329 (330)
T PF03060_consen 303 GLLWAGQ---GVGLIKEIRPAAEIVEELVE 329 (330)
T ss_dssp S--B--G---GGGGG-S-B-HHHHHHHHHH
T ss_pred eeEecCh---hhhhhcCCCcHHHHHHHHHh
Confidence 4456665 35899999999999888765
No 377
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=39.68 E-value=99 Score=33.31 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=51.3
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCceEEEEEe--CCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcchhhhHH
Q 009327 157 RFSSGLSLPQICENFVKAAYDPRIVGIYLHI--EPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYL 228 (537)
Q Consensus 157 ~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I--nSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~AaSgGY~I 228 (537)
.|.+.+.++.+.+.|++...| +|--|++.| ||-||.......++..-.-.++-+.||+-=...++..+|+|
T Consensus 164 pFKGd~D~~kLe~lidevG~~-nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFI 236 (471)
T COG3033 164 PFKGNFDLEKLERLIDEVGAD-NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFI 236 (471)
T ss_pred CCCCccCHHHHHHHHHHhCcc-cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhh
Confidence 455788899998888888765 577777765 88899888888877665555566888854333567777765
No 378
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=38.73 E-value=1.9e+02 Score=31.42 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCC----CCchHHHHHHHHHHH-HhcCCCCEEEEE-Cchh---hHHHHHHHHhc--
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSP----GGDALASDLMWREIR-LLSESKPVIASM-SDVA---ASGGYYMAMAA-- 483 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~Sp----GG~~~~s~~i~~~i~-~~~~~kPVIA~v-~G~A---asgG~~lA~a~-- 483 (537)
.+.|.++|+++.+.-+-++|+|.-.|. |-|+. .+.+.++ +. ++|||..= +|+. ..-|+..++.+
T Consensus 74 ~~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~---~v~~~~~~~~--~~pvi~v~t~gf~g~~~~~G~~~a~~al~ 148 (426)
T cd01972 74 EKKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVE---SVVEELEDEI--GIPVVALHCEGFKGKHWRSGFDAAFHGIL 148 (426)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHH---HHHHHHHHhh--CCCEEEEeCCccCCccHhHHHHHHHHHHH
Confidence 367889999888755567777765443 33332 2333332 22 78888744 3443 34677776644
Q ss_pred CeEEEc--CCceeeeeecccCc-----------ccHHHHHHHhCCceEeeccc
Q 009327 484 GTILAE--NLTLTGSIGVVTGK-----------FNLGKLYEKIGFNKEIISRG 523 (537)
Q Consensus 484 D~i~A~--p~a~~GsIGV~~~~-----------~~~~~L~~k~G~~~~~i~~g 523 (537)
+...-. +...-++|-+++.. ..+.+|++++|+++..+..|
T Consensus 149 ~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~ 201 (426)
T cd01972 149 RHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAG 201 (426)
T ss_pred HHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCC
Confidence 322221 12222344443333 33788999999999888776
No 379
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=38.19 E-value=69 Score=31.17 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=39.8
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHH-----------hcCCCceEEEEEeCCCCCCHHHHHH------HHH
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKA-----------AYDPRIVGIYLHIEPLSCGWGKVEE------IRR 202 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A-----------~~D~~IkaIVL~InSpGG~~~~see------I~~ 202 (537)
+|.|+-++|...+. ++.++++ .+=+.+.|+|| |||..+.... +.+
T Consensus 2 ~IGVLalQG~v~EH--------------~~~l~~~~~~e~~~Vk~~~dL~~~d~LIi----PGGESTTi~rL~~~~gl~e 63 (194)
T COG0311 2 KIGVLALQGAVEEH--------------LEALEKAGGAEVVEVKRPEDLEGVDGLII----PGGESTTIGRLLKRYGLLE 63 (194)
T ss_pred eEEEEEecccHHHH--------------HHHHHhhcCCceEEEcCHHHhccCcEEEe----cCccHHHHHHHHHHcCcHH
Confidence 47888888877654 2333333 23346778888 9998776643 556
Q ss_pred HHHHhhhcCCeEEE
Q 009327 203 HVVDFKKSGKFIIG 216 (537)
Q Consensus 203 ~I~~lr~s~KpVva 216 (537)
.|+++.+.++||..
T Consensus 64 ~l~~~~~~G~Pv~G 77 (194)
T COG0311 64 PLREFIADGLPVFG 77 (194)
T ss_pred HHHHHHHcCCceEE
Confidence 67777778999964
No 380
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=37.63 E-value=3.3e+02 Score=29.62 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=79.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEE
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIG 216 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva 216 (537)
+.++|++++.+ .. -+.+.+.++|-+--....|+..+.++++- ..++|.+.|.+.+ -.|+.
T Consensus 245 ~~~~V~l~Y~s------my------g~T~~ma~aiaegl~~~gv~v~~~~~~~~-----~~~eI~~~i~~a~---~~vvG 304 (388)
T COG0426 245 PKGKVDLIYDS------MY------GNTEKMAQAIAEGLMKEGVDVEVINLEDA-----DPSEIVEEILDAK---GLVVG 304 (388)
T ss_pred CcceEEEEEec------cc------CCHHHHHHHHHHHhhhcCCceEEEEcccC-----CHHHHHHHHhhcc---eEEEe
Confidence 34478888762 11 12456777776666667788888888764 5677888887542 23333
Q ss_pred Eec--------CcchhhhHHhhccCeeEecCCCeeEEecccccccc-hhhHhhhcCcceEEEEeccccccCCcccCCCCC
Q 009327 217 YVP--------VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASF-LGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMS 287 (537)
Q Consensus 217 ~v~--------~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~-~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s 287 (537)
.=. ...--+|.++.....=. .+.+||.|=.+.... +++.|+.+|.++..... +. +-.++
T Consensus 305 sPT~~~~~~p~i~~~l~~v~~~~~~~k~---~~vfgS~GW~g~av~~i~~~l~~~g~~~~~~~i-~v--------k~~P~ 372 (388)
T COG0426 305 SPTINGGAHPPIQTALGYVLALAPKNKL---AGVFGSYGWSGEAVDLIEEKLKDLGFEFGFDGI-EV--------KFRPT 372 (388)
T ss_pred cCcccCCCCchHHHHHHHHHhccCcCce---EEEEeccCCCCcchHHHHHHHHhcCcEEeccce-EE--------EecCC
Confidence 221 11223566666555433 467888888777666 68889999987654321 11 12357
Q ss_pred HHHHHHHHHHHHH
Q 009327 288 EENCEMLTALLDN 300 (537)
Q Consensus 288 ~e~~e~lq~~l~~ 300 (537)
+++.+...+...+
T Consensus 373 ~~~l~~c~e~g~~ 385 (388)
T COG0426 373 EEDLKKCEEAGRD 385 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766665543
No 381
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=37.43 E-value=78 Score=33.74 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcc---h------hhhHHhhccC
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCG---E------KEYYLACACE 233 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~Aa---S------gGY~IAsaaD 233 (537)
+.+.+++-|++|+.||+|.+|=+.+==-+.. ..|.++|.+..++||-|.++++.=| . +--+=-+.|.
T Consensus 19 sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~----S~iv~aLi~AA~nGK~Vtv~vELkARFDEe~Ni~Wa~~Le~aGv~ 94 (352)
T PF13090_consen 19 SFDPVVDFLREAAEDPDVLAIKITLYRVASN----SPIVNALIEAAENGKQVTVLVELKARFDEENNIHWAKRLEEAGVH 94 (352)
T ss_dssp -TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-----HHHHHHHHHHHTT-EEEEEESTTSSSTTCCCCCCCHHHHHCT-E
T ss_pred ccHHHHHHHHHHhcCCCccEEEEEEEecCCC----CHHHHHHHHHHHcCCEEEEEEEEeccccHHHHhHHHhhHHhcCeE
Confidence 4567899999999999999988876433322 2344555555567999999996211 1 2233345577
Q ss_pred eeEecCCCe
Q 009327 234 ELYAPPSAY 242 (537)
Q Consensus 234 ~I~a~p~s~ 242 (537)
.||--|+=.
T Consensus 95 ViyG~~glK 103 (352)
T PF13090_consen 95 VIYGVPGLK 103 (352)
T ss_dssp EEE--TT-E
T ss_pred EEcCCCChh
Confidence 777666543
No 382
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=36.74 E-value=1.5e+02 Score=32.81 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=41.3
Q ss_pred CCceEEEEEeCCCCCCHHH---HHHHHH----HHHHhhhcCCeEEEEecC-cchhhhHH---hhccCeeEecCCCeeEEe
Q 009327 178 PRIVGIYLHIEPLSCGWGK---VEEIRR----HVVDFKKSGKFIIGYVPV-CGEKEYYL---ACACEELYAPPSAYFSLY 246 (537)
Q Consensus 178 ~~IkaIVL~InSpGG~~~~---seeI~~----~I~~lr~s~KpVva~v~~-AaSgGY~I---AsaaD~I~a~p~s~iGsi 246 (537)
-+|- +++-.|.+|-.+.. +..|.+ .+..+..++.|-|..+.. +.+|.|-+ +...|.+||-|++.++..
T Consensus 383 ~~IP-Li~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~Iavm 461 (536)
T KOG0540|consen 383 RNIP-LIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVM 461 (536)
T ss_pred cCCc-EEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeec
Confidence 3454 55567887733322 222322 233343467788887753 33455542 345799999999999887
Q ss_pred cc
Q 009327 247 GL 248 (537)
Q Consensus 247 Gv 248 (537)
|-
T Consensus 462 G~ 463 (536)
T KOG0540|consen 462 GG 463 (536)
T ss_pred cc
Confidence 63
No 383
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=36.06 E-value=76 Score=36.88 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecC-cc----hhhhHHh----hcc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPV-CG----EKEYYLA----CAC 232 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~-Aa----SgGY~IA----saa 232 (537)
-|.+.+++.|++|+.||+|.+|-+.+==.+.+ ..|.++|.+..+.||-|.++++. |. ..-.|.- +.|
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~----s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~ 414 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKD----SPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGV 414 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEecCC----cHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCC
Confidence 46788999999999999988877654222212 45666777776789999999982 21 2223333 677
Q ss_pred CeeEecCC
Q 009327 233 EELYAPPS 240 (537)
Q Consensus 233 D~I~a~p~ 240 (537)
+.||--|.
T Consensus 415 ~viyg~~~ 422 (672)
T TIGR03705 415 HVVYGVVG 422 (672)
T ss_pred EEEEcCCC
Confidence 88884444
No 384
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=35.92 E-value=1.6e+02 Score=31.77 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCe--EEEEec---Ccc--hhhhHHhhccCeeEecCCC
Q 009327 169 ENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKF--IIGYVP---VCG--EKEYYLACACEELYAPPSA 241 (537)
Q Consensus 169 ~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~Kp--Vva~v~---~Aa--SgGY~IAsaaD~I~a~p~s 241 (537)
+.+.+.....+.++| +-||+||-.+--+. .+|+.+.+ ||=|+. -|+ +-..-|+-.+|++++
T Consensus 72 ~~~~~~~~~~~pd~v-IlID~pgFNlrlak-------~lk~~~~~~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~---- 139 (373)
T PF02684_consen 72 RKLVERIKEEKPDVV-ILIDYPGFNLRLAK-------KLKKRGIPIKVIYYISPQVWAWRPGRAKKIKKYVDHLLV---- 139 (373)
T ss_pred HHHHHHHHHcCCCEE-EEeCCCCccHHHHH-------HHHHhCCCceEEEEECCceeeeCccHHHHHHHHHhheeE----
Confidence 333333234455554 55999998774333 33344554 888885 254 346888999999876
Q ss_pred eeEEecccccccchhhHhhhcCcceEEE
Q 009327 242 YFSLYGLTVQASFLGGVLEKVGIEPQVQ 269 (537)
Q Consensus 242 ~iGsiGv~~~~~~~~~ll~k~GI~~~~v 269 (537)
..||=.+++++.|++...+
T Consensus 140 ---------ifPFE~~~y~~~g~~~~~V 158 (373)
T PF02684_consen 140 ---------IFPFEPEFYKKHGVPVTYV 158 (373)
T ss_pred ---------CCcccHHHHhccCCCeEEE
Confidence 3456678899999776544
No 385
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=35.66 E-value=54 Score=30.40 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEE-Eec-Ccch----hhhHHhhccCeeE
Q 009327 165 PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIG-YVP-VCGE----KEYYLACACEELY 236 (537)
Q Consensus 165 ~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva-~v~-~AaS----gGY~IAsaaD~I~ 236 (537)
.++++.|.++.++ +.+|||. ||+.--.+-.|+++|+.+ ++|+|= .+. ..+- ---+++-.|.-++
T Consensus 54 Gelid~I~~a~~~--~dgiIIN---pga~thtS~Ai~DAl~~~---~~P~vEVHiSNi~~RE~fR~~S~~s~~~~g~I 123 (140)
T PF01220_consen 54 GELIDWIHEARDD--VDGIIIN---PGAYTHTSIAIRDALKAI---SIPVVEVHISNIHAREEFRHHSVISPVAVGVI 123 (140)
T ss_dssp HHHHHHHHHHTCT--TSEEEEE----GGGGHT-HHHHHHHHCC---TS-EEEEESS-GGGS-GGGG--SSGGGSSEEE
T ss_pred HHHHHHHHHHHhh--CCEEEEc---cchhccccHHHHHHHHcC---CCCEEEEEcCCcccccccccccccccccEEEE
Confidence 4899999999866 8899996 887777788999999865 788874 444 3322 2345555555444
No 386
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=35.56 E-value=54 Score=30.65 Aligned_cols=64 Identities=9% Similarity=0.088 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEE-EEec-Ccchh----hhHHhhccCeeE
Q 009327 165 PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFII-GYVP-VCGEK----EYYLACACEELY 236 (537)
Q Consensus 165 ~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVv-a~v~-~AaSg----GY~IAsaaD~I~ 236 (537)
-++++.|.++.+ ++.+|||. ||+.--.+-.|+++|+.+ ++|+| +.++ ..+-- --|++-.|.-++
T Consensus 55 GelId~I~~a~~--~~dgiiIN---pga~THtSiAl~DAl~~~---~~P~VEVHiSNi~aRE~fR~~S~is~~a~G~I 124 (146)
T PRK05395 55 GELIDRIHEARD--GADGIIIN---PGAYTHTSVALRDALAAV---SIPVIEVHLSNIHAREEFRHHSYISDVAVGVI 124 (146)
T ss_pred HHHHHHHHhccc--CCcEEEEC---chHHHHHHHHHHHHHHcC---CCCEEEEecCCccccccccccccccccceEEE
Confidence 489999999864 57898885 887777888999999865 78887 4443 33322 234555555444
No 387
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=35.14 E-value=55 Score=30.36 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEE-Eec-Ccchh----hhHHhhccCeeEe
Q 009327 165 PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIG-YVP-VCGEK----EYYLACACEELYA 237 (537)
Q Consensus 165 ~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva-~v~-~AaSg----GY~IAsaaD~I~a 237 (537)
.++++.|.+|.++ +.+||+. ||+.--.+-.|+++|..+ ++|+|= .++ ..+-- --|++-.|.-+++
T Consensus 53 GelId~i~~a~~~--~dgiIIN---pga~THtSiAl~DAl~~~---~~P~vEVHiSNi~aRE~fR~~S~is~~~~G~I~ 123 (141)
T TIGR01088 53 GQLIDKIHEAEGQ--YDGIIIN---PGALTHTSVALRDALAAV---SLPVVEVHLSNVHAREEFRHHSYTAPVAGGVIV 123 (141)
T ss_pred HHHHHHHHhcccc--CCEEEEc---ChHHhhhHHHHHHHHHcC---CCCEEEEEcCCccccccccccccccccceEEEe
Confidence 4899999998643 7888885 887777888999999855 788874 444 33322 2456666655443
No 388
>PLN02409 serine--glyoxylate aminotransaminase
Probab=34.64 E-value=5.9e+02 Score=27.11 Aligned_cols=78 Identities=6% Similarity=0.041 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEe-CCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcchh-hhHHh---hccCeeE
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEK-EYYLA---CACEELY 236 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~I-nSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~AaSg-GY~IA---saaD~I~ 236 (537)
...+++.+.++.- ..+++++|++.- ++|.|.....++|.+.++ .++.+.++ ++|.+.+. ..-+. ..||.++
T Consensus 121 ~~~~~l~~~l~~~-~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~--vvD~v~s~g~~~id~~~~~~D~~~ 196 (401)
T PLN02409 121 ADLDILKSKLRQD-TNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALL--LVDGVSSIGALDFRMDEWGVDVAL 196 (401)
T ss_pred CCHHHHHHHHhhC-cCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEE--EEEcccccCCccccccccCccEEE
Confidence 3455555555421 004788888754 558888888899988866 55555444 45643333 33222 3577666
Q ss_pred ecCCCee
Q 009327 237 APPSAYF 243 (537)
Q Consensus 237 a~p~s~i 243 (537)
.+..=.+
T Consensus 197 ~s~~K~l 203 (401)
T PLN02409 197 TGSQKAL 203 (401)
T ss_pred EcCcccc
Confidence 6554334
No 389
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=33.97 E-value=2.2e+02 Score=26.29 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcc-hhhhHHhhccCeeEecC
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCG-EKEYYLACACEELYAPP 239 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~Aa-SgGY~IAsaaD~I~a~p 239 (537)
.++.+++.+.|++.. +.+.+|++. ||. ...+.+.+.++.+|+.+.++..+.+... ..---++...|.+.+.|
T Consensus 45 ~lt~eel~~~I~~~~--~~~~gVt~S----GGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~l~~g~ 117 (147)
T TIGR02826 45 KLTPEYLTKTLDKYR--SLISCVLFL----GGE-WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDYLKTGR 117 (147)
T ss_pred CCCHHHHHHHHHHhC--CCCCEEEEe----chh-cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCEEEECh
Confidence 478889999988876 347788884 677 6778899999999888888755543211 11012344466666655
No 390
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.93 E-value=4.3e+02 Score=29.03 Aligned_cols=79 Identities=6% Similarity=0.019 Sum_probs=45.9
Q ss_pred ceEEEEEeCCCC--CCHHHHHHHHHHHHHhhh---------cCCeEEEEecCc--chhhhHHhhccCeeEecCCCeeEEe
Q 009327 180 IVGIYLHIEPLS--CGWGKVEEIRRHVVDFKK---------SGKFIIGYVPVC--GEKEYYLACACEELYAPPSAYFSLY 246 (537)
Q Consensus 180 IkaIVL~InSpG--G~~~~seeI~~~I~~lr~---------s~KpVva~v~~A--aSgGY~IAsaaD~I~a~p~s~iGsi 246 (537)
..+|+...++.| |... .-.+...|.+++. .++||++-+..+ .+....+++.||-|.+ |++
T Consensus 178 aD~Ivvq~EAGGH~g~~~-~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~------GT~ 250 (418)
T cd04742 178 ADDITVEADSGGHTDNRP-LSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVT------GSI 250 (418)
T ss_pred CCEEEEcccCCCCCCCcc-HHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEee------ccH
Confidence 468888877755 2221 2233333433332 158999998754 4556778889998876 343
Q ss_pred ccc----ccccchhhHhhhcCcc
Q 009327 247 GLT----VQASFLGGVLEKVGIE 265 (537)
Q Consensus 247 Gv~----~~~~~~~~ll~k~GI~ 265 (537)
-+. .....+|++|-+.+..
T Consensus 251 flat~Ea~~s~~~K~~L~~a~~~ 273 (418)
T cd04742 251 NQCTVEAGTSDAVKDLLQKAGVQ 273 (418)
T ss_pred HHhCccccCCHHHHHHHHhCCCC
Confidence 222 2345577777555443
No 391
>PRK05443 polyphosphate kinase; Provisional
Probab=33.15 E-value=87 Score=36.52 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcc-----hh----hhHHhhcc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCG-----EK----EYYLACAC 232 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~Aa-----Sg----GY~IAsaa 232 (537)
-|.+.+++.|++|+.||+|.+|-+.+==.+.+ ..|.++|.+..+.||-|.++++.-+ .. .-+....|
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~----s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv 423 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTSKD----SPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGV 423 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEecCC----HHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCC
Confidence 46788999999999999988887755322322 5566777777678999999997322 11 23334667
Q ss_pred CeeEecCC
Q 009327 233 EELYAPPS 240 (537)
Q Consensus 233 D~I~a~p~ 240 (537)
..||--|.
T Consensus 424 ~V~y~~~~ 431 (691)
T PRK05443 424 HVVYGVVG 431 (691)
T ss_pred EEEEccCC
Confidence 77775554
No 392
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=32.87 E-value=67 Score=30.03 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEE-EEec-Ccchh----hhHHhhccCeeE
Q 009327 165 PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFII-GYVP-VCGEK----EYYLACACEELY 236 (537)
Q Consensus 165 ~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVv-a~v~-~AaSg----GY~IAsaaD~I~ 236 (537)
-++++.|.++.+ ++.+|||. ||+.-..+-.|+++|+.+ ++|+| +.+. ..+-- --+++-.|.-++
T Consensus 55 GelId~i~~a~~--~~dgiIIN---pga~THtSiAl~DAl~~~---~~P~VEVHiSNi~aRE~fR~~S~is~~~~G~I 124 (146)
T PRK13015 55 GELIDWIHEARG--DVAGIVIN---PGAYTHTSVAIRDALAAL---ELPVIEVHISNVHAREAFRHHSYVSAIADGVI 124 (146)
T ss_pred HHHHHHHHHhhh--cCCEEEEc---chHHhhhHHHHHHHHHcC---CCCEEEEEcCCccccccccccccccCceeEEE
Confidence 489999999853 36888875 887777888999999865 78887 4444 32221 235555555444
No 393
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=32.65 E-value=1.4e+02 Score=32.08 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=48.5
Q ss_pred CCcEEEEEEecccccC--------CCCCCCCC---ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHH
Q 009327 387 GDQIAVIRASGSISRV--------RSPLSLSS---SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREI 455 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~--------~~~~~~~~---~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i 455 (537)
+++|++|+-.|-...- .....|.. .....+.+.++|+.+.+|+++++|++-+. |+.... +.+.+.+
T Consensus 256 ~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~~~e~~~~aL~~l~~d~~vd~vlv~~~--~~~~~~-~~va~~i 332 (388)
T PRK00696 256 DGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGATAERVAEAFKIILSDPNVKAILVNIF--GGITRC-DVIAEGI 332 (388)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCCCHHHHHHHHHHHhcCCCCCEEEEEeC--CCCCCH-HHHHHHH
Confidence 4788888765544210 01112222 22456788999999999999999997543 443222 3344444
Q ss_pred HHh--c--CCCCEEEEECc
Q 009327 456 RLL--S--ESKPVIASMSD 470 (537)
Q Consensus 456 ~~~--~--~~kPVIA~v~G 470 (537)
.+. + .+|||++.+.|
T Consensus 333 ~~~~~~~~~~kPvv~~~~g 351 (388)
T PRK00696 333 IAAVKEVGVTVPLVVRLEG 351 (388)
T ss_pred HHHHHhcCCCCcEEEEeCC
Confidence 332 1 37999888776
No 394
>PRK11660 putative transporter; Provisional
Probab=32.48 E-value=1.7e+02 Score=33.10 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=49.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHHHhhhcCCeE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKSGKFI 214 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~~lr~s~KpV 214 (537)
.+.+.+++++|.+.-.. .+.+.+.+++.. ++.+.|||+... ..-+....+.+.+..+++++ +..+
T Consensus 460 ~~~i~iv~~~g~L~F~n---------~~~l~~~l~~~~--~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l 525 (568)
T PRK11660 460 PDDVLVLRINGPLFFAA---------AERLFTELESRT--EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCEL 525 (568)
T ss_pred CCcEEEEEeCCeeeeee---------HHHHHHHHHhhC--CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEE
Confidence 46799999999987663 467777777654 457889999875 45678888889999998887 6654
No 395
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=31.72 E-value=71 Score=29.66 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEE-EEec
Q 009327 165 PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFII-GYVP 219 (537)
Q Consensus 165 ~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVv-a~v~ 219 (537)
.++++.|.+|.+ ++.+|||. ||+.--.+-.|+++|+.+ ++|+| +.++
T Consensus 53 gelid~I~~a~~--~~dgiIIN---pga~THtSvAi~DAl~~~---~~P~VEVHiS 100 (140)
T cd00466 53 GELIDWIHEARD--GADGIIIN---PGAYTHTSIALRDALAAV---SIPVIEVHIS 100 (140)
T ss_pred HHHHHHHHHhhc--cCcEEEEc---chHHHHHHHHHHHHHHcC---CCCEEEEecC
Confidence 489999999864 47899885 887777888999999865 68887 4444
No 396
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=31.59 E-value=3e+02 Score=30.08 Aligned_cols=105 Identities=9% Similarity=-0.015 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCc-----------ch------hh
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVC-----------GE------KE 225 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~A-----------aS------gG 225 (537)
+.+++.+..+++.++ ++.+|++.+-+.|-+-. +...++ ..++||+-+...- .| .+
T Consensus 48 ~~~~~~~~~~~~~~~-~~d~ii~~~~tf~~~~~----~~~~~~---~~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~ 119 (452)
T cd00578 48 TPDEARKAAEEFNEA-NCDGLIVWMHTFGPAKM----WIAGLS---ELRKPVLLLATQFNREIPDFMNLNQSACGLREFG 119 (452)
T ss_pred CHHHHHHHHHHHhhc-CCcEEEEcccccccHHH----HHHHHH---hcCCCEEEEeCCCCCCCCchhhhhcchhhhHHHH
Confidence 346777888888776 79999998887774422 222233 3478887776311 11 22
Q ss_pred hHHhhc---cCeeEec-----------------------CCCeeEEecccccccc-----hhhHhhhcCcceEEEEeccc
Q 009327 226 YYLACA---CEELYAP-----------------------PSAYFSLYGLTVQASF-----LGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 226 Y~IAsa---aD~I~a~-----------------------p~s~iGsiGv~~~~~~-----~~~ll~k~GI~~~~v~~G~y 274 (537)
+.+.-. ...|+-. .+..+|.+|-.+..+. -..+..++|++++.+-..+.
T Consensus 120 ~~l~r~gi~~~~v~g~~~d~~~~~~i~~~~raa~~~~~lr~~rig~iG~~~~~~~~~~~d~~~~~~~fG~~v~~i~~~el 199 (452)
T cd00578 120 NILARLGIPFKVVYGHWKDEDVLRKIESWARAAAAVATLRGLRVGRFGDRMRGMAVTEGDKVLAQIKFGVSVEYLEVGEL 199 (452)
T ss_pred HHHHHcCCceeEEECCCCCHHHHHHHHHHHHHHHHHHHhhcCceEEECCCcCCcEEecCCHHHHHHhhCeEEEEEcHHHH
Confidence 222211 2222222 3567888875544332 23577899999988877664
Q ss_pred c
Q 009327 275 K 275 (537)
Q Consensus 275 K 275 (537)
-
T Consensus 200 ~ 200 (452)
T cd00578 200 V 200 (452)
T ss_pred H
Confidence 3
No 397
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=31.57 E-value=1.4e+02 Score=32.82 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCC-CceEEEEEeCCCCCCHHHHHHHHHHHHHhhh-cC-CeEEEEe-cC----cchhhhHHhhcc--C
Q 009327 164 LPQICENFVKAAYDP-RIVGIYLHIEPLSCGWGKVEEIRRHVVDFKK-SG-KFIIGYV-PV----CGEKEYYLACAC--E 233 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~-~IkaIVL~InSpGG~~~~seeI~~~I~~lr~-s~-KpVva~v-~~----AaSgGY~IAsaa--D 233 (537)
-+.|.++|+++.+.- +.++|.+--..+-+-. .+.|...++++++ .+ +|||.+- +. ..+.||.+|..+ +
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~~lI--GDDi~~v~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~~~a~~al~~ 186 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTTALI--GDDIDAIAREVMEEIPDVDVFAINAPGFAGPSQSKGHHVANITWIN 186 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChHHhh--ccCHHHHHHHHHHhcCCCeEEEeeCCCcCCcccchHHHHHHHHHHH
Confidence 357777787776543 6777777544443222 3344444555543 33 7888754 21 235688776542 3
Q ss_pred eeE--ecC----CCeeEEecccccccc---hhhHhhhcCcceEEEEec
Q 009327 234 ELY--APP----SAYFSLYGLTVQASF---LGGVLEKVGIEPQVQRIG 272 (537)
Q Consensus 234 ~I~--a~p----~s~iGsiGv~~~~~~---~~~ll~k~GI~~~~v~~G 272 (537)
.++ +.| ...+..+|-+....+ ++.+|+++|+++...-.|
T Consensus 187 ~l~~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g 234 (457)
T TIGR01284 187 DKVGTAEPEITTEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTG 234 (457)
T ss_pred HHhCccCcccCCCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECC
Confidence 333 122 234666664433333 678999999999754443
No 398
>smart00245 TSPc tail specific protease. tail specific protease
Probab=31.24 E-value=1.9e+02 Score=27.65 Aligned_cols=56 Identities=7% Similarity=0.163 Sum_probs=39.2
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHH
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVV 205 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~ 205 (537)
+.|+.|.+.. .... ..+++.+.++++++ .+++++||++-. +||....+..+...+.
T Consensus 28 ~~igYi~i~~-f~~~---------~~~~~~~~~~~l~~-~~~~~lIiDLR~N~GG~~~~~~~~~~~f~ 84 (192)
T smart00245 28 GNIGYIRIPE-FSEH---------TSNLVEKAWKKLEK-TNVEGLILDLRNNPGGLLSAAIDVSSLFL 84 (192)
T ss_pred CcEEEEEEeE-EChh---------hHHHHHHHHHHHHh-CCCcEEEEEecCCCCCCHHHHHHHHHHhc
Confidence 5788888843 2111 34567777777774 479999999965 7888888777777664
No 399
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=30.55 E-value=74 Score=34.01 Aligned_cols=124 Identities=14% Similarity=0.097 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCC----------------------------------------CHHHHHHHHH
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSC----------------------------------------GWGKVEEIRR 202 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG----------------------------------------~~~~seeI~~ 202 (537)
+.+++.+.+++|..|+++.+|++.+-+..- +.-...|+..
T Consensus 56 t~~~i~~~~~~an~~~~c~gvi~wMhTfSpakmwI~gl~~l~kPllhl~tQ~~~~ip~~~iDmd~MnlNqsAHgdrEfg~ 135 (359)
T PF02610_consen 56 TPEEITRVCKEANADEDCDGVITWMHTFSPAKMWIPGLQRLQKPLLHLHTQPNRAIPWDTIDMDFMNLNQSAHGDREFGF 135 (359)
T ss_dssp SHHHHHHHHHHHHH-TTEEEEEEEESS---THHHHHHHHH--S-EEEEE--SSSS--TTT--HHHHHSS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCCccEEeehhhhhccHHHHHHHHHHhCCCeEEeecccccCCCcccCCHHHHHHhhcccccHHHHH
Confidence 357888899999999999999999988521 1122345666
Q ss_pred HHHHhhhcCCeEEEEec---CcchhhhHHhhccCeeEecCCCeeEEec-----ccccccchhhHhhhcCcceEEEEeccc
Q 009327 203 HVVDFKKSGKFIIGYVP---VCGEKEYYLACACEELYAPPSAYFSLYG-----LTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~---~AaSgGY~IAsaaD~I~a~p~s~iGsiG-----v~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
...+++..-|.|+.+-. ....-+-|+-+++ -........+|-+| |.....+.-.+--++|.+++.+.+|+.
T Consensus 136 i~~R~gi~~kvV~G~w~D~~v~~~I~~W~rAA~-~~~~~r~~kv~rfGdnmr~vavt~gDkv~a~~~fG~~V~~~~v~dL 214 (359)
T PF02610_consen 136 IFSRMGIPRKVVVGHWQDEEVWAEIGDWMRAAA-AWAELRHLKVGRFGDNMRGVAVTEGDKVEAQIQFGWHVNYYEVGDL 214 (359)
T ss_dssp HHHHTT--EEEEES-TT-HHHHHHHHHHHHHHH-HHHHHTT-EEEEES---TT-STT---HHHHHHHH--EEEEE-HHHH
T ss_pred HHHHhCCCcCeEeeeCCCHHHHHHHHHHHHHHH-HHHHhcCCeEEEECCCcccceeecCcHHHHHHhcCeEEEeecHHHH
Confidence 66665433333333432 2234455554432 22234566777776 333344455666789999999999987
Q ss_pred cccCCcccCCCCCHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCE 292 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e 292 (537)
....+. .|+++.+
T Consensus 215 ~~~~~~-----Vtd~ei~ 227 (359)
T PF02610_consen 215 VAYVDA-----VTDEEID 227 (359)
T ss_dssp HHHHHT-----S-HHHHH
T ss_pred HHHHHh-----CCHHHHH
Confidence 765543 3555543
No 400
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=30.00 E-value=48 Score=35.80 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=43.1
Q ss_pred CCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHH
Q 009327 240 SAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGN 304 (537)
Q Consensus 240 ~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~ 304 (537)
+-.+|.+|+.+..+ ..++|+|+.+|++.+.+-.- .++.++.+...||.+|..+++..++
T Consensus 401 tr~l~q~GFLAkvF---ti~ek~~isVDvvaTSEV~i---SltL~~~~~~sreliq~~l~~a~ee 459 (559)
T KOG0456|consen 401 TRMLGQHGFLAKVF---TIFEKLGISVDVVATSEVSI---SLTLDPSKLDSRELIQGELDQAVEE 459 (559)
T ss_pred cchhhhhhHHHHHH---HHHHHhCcEEEEEEeeeEEE---EEecChhhhhhHHHHHhhHHHHHHH
Confidence 34567777766555 56899999999999887542 2344666778899999888876544
No 401
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=29.31 E-value=61 Score=35.61 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-HHHHHHHHH------HHH--H-hhhcCCeEEEEe-cCcchhhhHHh
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVEEIRR------HVV--D-FKKSGKFIIGYV-PVCGEKEYYLA 229 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~-~~~seeI~~------~I~--~-lr~s~KpVva~v-~~AaSgGY~IA 229 (537)
.+.....+++.+.|.+|. .-.|.| .||.|-. ..+++-+.+ ... . +...+.|=++++ +.|+.||-|.-
T Consensus 130 ~i~~kk~lr~~e~a~~~~-~p~iyL-~DSgga~l~~~~es~~d~~~~~~If~n~n~mss~~ipqis~Img~Ct~gg~y~p 207 (536)
T KOG0540|consen 130 PITVKKHLRAQEIADNNR-LPCIYL-VDSGGARLPRQAESFADSYHFGRIFYNQNVMSSGNIPQISVIMGSCTAGGAYVP 207 (536)
T ss_pred hhhHHHHhhHHHHHhhcC-CCceeE-ecCccccCcchhhhcCChhhhheeeeecceeccCCCCceeEEEecccCCceecc
Confidence 355667777777777653 334444 4665542 223332222 111 1 123578888877 58999999999
Q ss_pred hccCeeEecCCCe-eEEec
Q 009327 230 CACEELYAPPSAY-FSLYG 247 (537)
Q Consensus 230 saaD~I~a~p~s~-iGsiG 247 (537)
+.+|+++|...+. +=+.|
T Consensus 208 Am~d~~~~vk~~s~lfl~g 226 (536)
T KOG0540|consen 208 AMADETIMVKDTSTLFLAG 226 (536)
T ss_pred cccceeEEecCcceEEecC
Confidence 9999999977653 33344
No 402
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=28.03 E-value=1.2e+02 Score=31.42 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec--CcchhhhHHhhcc
Q 009327 165 PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP--VCGEKEYYLACAC 232 (537)
Q Consensus 165 ~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~--~AaSgGY~IAsaa 232 (537)
.++++.+.++.....++||+ .+.=|+..+.+.|.+.++++|+..+-+.-.++ ++..||.|++-..
T Consensus 59 ~~~l~~l~~~~~~~~~davl---tGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~ 125 (281)
T COG2240 59 ADLLNGLEAIDKLGECDAVL---TGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEV 125 (281)
T ss_pred HHHHHHHHhcccccccCEEE---EccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccch
Confidence 34555555544455666663 45568999999999999999886555544444 5666777766543
No 403
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=27.96 E-value=2.4e+02 Score=32.44 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcC--CeEEEEec-C--cc--hhhhHHhhccCeeEecC
Q 009327 167 ICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSG--KFIIGYVP-V--CG--EKEYYLACACEELYAPP 239 (537)
Q Consensus 167 l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~--KpVva~v~-~--Aa--SgGY~IAsaaD~I~a~p 239 (537)
+.+.+.+...+.+..++|+ ||.||-.+--+ +.+|+.| +||+=|+. . |. .--.-|.-.+|++.+
T Consensus 298 ~~~~l~~~i~~~kPD~vIl-ID~PgFNlrLA-------K~lkk~Gi~ipviyYVsPqVWAWR~~Rikki~k~vD~ll~-- 367 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVIC-IDFPDFHFLLI-------KKLRKRGYKGKIVHYVCPSIWAWRPKRKTILEKYLDLLLL-- 367 (608)
T ss_pred HHHHHHHHHHhcCCCEEEE-eCCCCCCHHHH-------HHHHhcCCCCCEEEEECccceeeCcchHHHHHHHhhhhee--
Confidence 3344444444555666666 99999877422 3344556 49999995 2 54 346788899999886
Q ss_pred CCeeEEecccccccchhhHhhhcCcceEEE
Q 009327 240 SAYFSLYGLTVQASFLGGVLEKVGIEPQVQ 269 (537)
Q Consensus 240 ~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v 269 (537)
..||=++++++.|++...+
T Consensus 368 -----------IfPFE~~~y~~~gv~v~yV 386 (608)
T PRK01021 368 -----------ILPFEQNLFKDSPLRTVYL 386 (608)
T ss_pred -----------cCccCHHHHHhcCCCeEEE
Confidence 3455567888889887655
No 404
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.89 E-value=1.4e+02 Score=32.62 Aligned_cols=75 Identities=16% Similarity=-0.012 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHH-----HHHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeE
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-----VEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELY 236 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~-----seeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~ 236 (537)
-...+|+++|+.+...+.+..||| +- .||+... -+.+.++|. +++.|||+-++.-.-- ...=..||...
T Consensus 170 ~a~~~i~~al~~~~~~~~~dviii-~R-GGGs~eDL~~Fn~e~~~rai~---~~~~Pvis~iGHe~D~-ti~D~vAd~ra 243 (432)
T TIGR00237 170 GAVQSIVESIELANTKNECDVLIV-GR-GGGSLEDLWSFNDEKVARAIF---LSKIPIISAVGHETDF-TISDFVADLRA 243 (432)
T ss_pred cHHHHHHHHHHHhhcCCCCCEEEE-ec-CCCCHHHhhhcCcHHHHHHHH---cCCCCEEEecCcCCCc-cHHHHhhhccC
Confidence 346799999999887666665555 22 4556544 367888887 5689999877521100 12235689999
Q ss_pred ecCCCe
Q 009327 237 APPSAY 242 (537)
Q Consensus 237 a~p~s~ 242 (537)
..|++.
T Consensus 244 ~TPtaa 249 (432)
T TIGR00237 244 PTPSAA 249 (432)
T ss_pred CCcHHH
Confidence 999864
No 405
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=27.55 E-value=3.3e+02 Score=21.97 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=37.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCC-CCchHHHHHHHHHHHHhc
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSP-GGDALASDLMWREIRLLS 459 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~Sp-GG~~~~s~~i~~~i~~~~ 459 (537)
.+.+.++.+.|++.. ...+.+.+.+.++.+++ .+.|+|....- .-+..+...+....+.++
T Consensus 6 ~~~~~ii~l~G~l~~-----------~~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~ 67 (99)
T cd07043 6 RGGVLVVRLSGELDA-----------ATAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRAR 67 (99)
T ss_pred ECCEEEEEEeceecc-----------cchHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHH
Confidence 357899999999864 22456777777666543 78899875421 112333455666666653
No 406
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=26.85 E-value=1.6e+02 Score=34.31 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeeE-E
Q 009327 167 ICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFS-L 245 (537)
Q Consensus 167 l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~s~iG-s 245 (537)
+..++......|++.+|||.. +..-.+++.+.+..+++.+.||+..-.......-.|...--+|-....-.+- .
T Consensus 259 ~l~al~~~~~~~~~a~lIlTg-----g~~~~~~v~~l~~~a~~~~ipVl~t~~dT~~ta~~i~~~~~~i~~~d~~ki~~~ 333 (684)
T PRK05632 259 ILAALLAAMNGPPIAGLLLTG-----GYEPDPRIAKLCEGAFETGLPVLSVDTNTYQTALRLQSFNGEVPVDDHERIETV 333 (684)
T ss_pred HHHHHHhcccCCCceEEEEcC-----CCCCCHHHHHHHhhcccCCCCEEEecCCHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 344444433348899999963 2222444665666655678999876543334444555544555443332332 3
Q ss_pred ecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHc
Q 009327 246 YGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIN 325 (537)
Q Consensus 246 iGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~ 325 (537)
.+++..+.++..++++++... .+ . ..+||.. .+ .++++.+.+.++ .. .+-+--+
T Consensus 334 ~~~~~~~vD~~~l~~~l~~~~--~~----~--------~~~~p~~------~~----~~l~~~a~~~~~-~i-~~~e~~d 387 (684)
T PRK05632 334 LELVASHVDTDELLERLTATS--ER----S--------RRLSPPA------FR----YQLTERARAAKK-RI-VLPEGDE 387 (684)
T ss_pred HHHHHHhCCHHHHHHHhccCC--CC----C--------CCcCHHH------HH----HHHHHHHhcCCC-EE-EEeCCCC
Confidence 567777888888888776421 00 0 2244441 11 122222322221 10 0000012
Q ss_pred cCccc-HHHHHHcCCceee-cCchHHHHHHHHHhCCCCCCCCCeee
Q 009327 326 DGVYK-VERLKEEGFITNV-LYDDEVISMLKERLGVQKDKNLPMVD 369 (537)
Q Consensus 326 g~v~t-a~eAle~GLVD~i-~~~dd~i~~l~~~~g~~~~~~~~~v~ 369 (537)
.++.. +.++++.|+++=+ .+..+.++...+..|++....+++++
T Consensus 388 ~~~l~Aa~~~~~~g~~~~iLvG~~~~I~~~~~~~~~~l~~~~~Ii~ 433 (684)
T PRK05632 388 PRTLKAAAICLERGIADCVLLGNPEEIRRVAAAQGVDLPAGIEIID 433 (684)
T ss_pred HHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHcCCCccCCcEEEC
Confidence 23443 4679999999955 46666677666777764212455554
No 407
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=26.70 E-value=1e+02 Score=25.08 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=21.6
Q ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecC
Q 009327 177 DPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPV 220 (537)
Q Consensus 177 D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~ 220 (537)
++++..++++... .. ...|..|++.|+.||||++.
T Consensus 24 ~~~~~v~~iD~~~-----~~----~~~I~~L~~~G~~vicY~s~ 58 (74)
T PF03537_consen 24 DPDVDVVVIDLFD-----FS----KEEIARLKAQGKKVICYFSI 58 (74)
T ss_dssp TSS-SEEEE-SBS-----------HHHHHHHHHTT-EEEEEEES
T ss_pred CCCCCEEEECCcc-----CC----HHHHHHHHHCCCEEEEEEeC
Confidence 3677778887654 22 33466677889999999973
No 408
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=26.14 E-value=5.1e+02 Score=27.25 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCC---CCchHH--HHHHHHHHHHhc--CCCCEEEEEC----chhhHHHHHHHHhcC
Q 009327 416 EQLIEKIRKVRESKRYKAAIIRIDSP---GGDALA--SDLMWREIRLLS--ESKPVIASMS----DVAASGGYYMAMAAG 484 (537)
Q Consensus 416 ~~l~~~l~~~~~d~~vraVVL~i~Sp---GG~~~~--s~~i~~~i~~~~--~~kPVIA~v~----G~AasgG~~lA~a~D 484 (537)
.+....++++. ++.++.|.+.|| ||.... .+.+.+.++.++ ..+||++-+. +.+.-+.......+|
T Consensus 112 ~d~~~~~~~~~---~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 112 ADYARLLEEAG---DADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHHHHHhcC---CCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCc
Confidence 34444444443 378999988775 554333 223333333332 2799999885 466667777788889
Q ss_pred eEEEcCCceee
Q 009327 485 TILAENLTLTG 495 (537)
Q Consensus 485 ~i~A~p~a~~G 495 (537)
-+++..++.-+
T Consensus 189 gl~~~NT~~~~ 199 (310)
T COG0167 189 GLIAINTTKSG 199 (310)
T ss_pred EEEEEeecccc
Confidence 99999887644
No 409
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=26.10 E-value=3.8e+02 Score=28.45 Aligned_cols=56 Identities=21% Similarity=0.105 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHhc-CCCceEEEEEeCCC--CCCHHHHHHHHHHHHHhhhcCCeEEEEe
Q 009327 160 SGLSLPQICENFVKAAY-DPRIVGIYLHIEPL--SCGWGKVEEIRRHVVDFKKSGKFIIGYV 218 (537)
Q Consensus 160 ~~~s~~~l~~~L~~A~~-D~~IkaIVL~InSp--GG~~~~seeI~~~I~~lr~s~KpVva~v 218 (537)
++.+.+-|..+++-|++ ||+.|- -+|.. .+.-.+..-+.++|+.|++.|.||=+.+
T Consensus 166 ~~~gpd~I~~aF~~AreadP~AkL---~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG 224 (345)
T COG3693 166 GGTGPDYIKLAFHIAREADPDAKL---VINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIG 224 (345)
T ss_pred cCCccHHHHHHHHHHHhhCCCceE---EeecccccCChHHHHHHHHHHHHHHHCCCCcccee
Confidence 36677788888888776 666543 34554 5788899999999999999999985554
No 410
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=26.08 E-value=8.4e+02 Score=28.10 Aligned_cols=173 Identities=12% Similarity=0.015 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCCeEEEEec---CcchhhhHHh--hccCe
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIGYVP---VCGEKEYYLA--CACEE 234 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~KpVva~v~---~AaSgGY~IA--saaD~ 234 (537)
..+.+.+++..+++.+ -.+..|.| -|+-| .....+.++.++|++. .+.|+-...+ ..+-+.|+-| +.||.
T Consensus 150 ~~t~e~~~~~ak~l~~-~Gad~I~I-kDtaG~l~P~~v~~lv~alk~~--~~ipi~~H~Hnt~Gla~an~laAieaGad~ 225 (596)
T PRK14042 150 VHTLDNFLELGKKLAE-MGCDSIAI-KDMAGLLTPTVTVELYAGLKQA--TGLPVHLHSHSTSGLASICHYEAVLAGCNH 225 (596)
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEe-CCcccCCCHHHHHHHHHHHHhh--cCCEEEEEeCCCCCcHHHHHHHHHHhCCCE
Confidence 3567777777777664 34554444 36655 3456666666666642 3678876664 2344555544 45676
Q ss_pred eEecCCCeeEEecccccccchhhH---hhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009327 235 LYAPPSAYFSLYGLTVQASFLGGV---LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSS 311 (537)
Q Consensus 235 I~a~p~s~iGsiGv~~~~~~~~~l---l~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~ 311 (537)
|=.+ ++.+|=....+..+.+ |+..|++ ..+.-+....+.+++..+...+......
T Consensus 226 iD~a----i~glGg~tGn~~tE~lv~~L~~~g~~------------------tgidl~~l~~~~~~~~~vr~~y~~~~~~ 283 (596)
T PRK14042 226 IDTA----ISSFSGGASHPPTEALVAALTDTPYD------------------TELDLNILLEIDDYFKAVRKKYSQFESE 283 (596)
T ss_pred EEec----cccccCCCCcHhHHHHHHHHHhcCCC------------------CCCCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 6433 3333333334444443 3333322 1234444455555555554444333344
Q ss_pred hcCCCHHHHHHHHccCcccH--HHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 312 TKGKRKEDIERFINDGVYKV--ERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 312 ~Rg~~~~~v~~~~~g~v~ta--~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
-++.+.+-...-+=|+.+|- +|+.++|+-|.+--.-+.+..+.+.+|-
T Consensus 284 ~~~~~~~v~~hq~PGG~~snl~~Ql~~~g~~d~~~ev~~e~~~v~~~lG~ 333 (596)
T PRK14042 284 AQNIDPRVQLYQVPGGMISNLYNQLKEQNALDKMDAVHKEIPRVRKDLGY 333 (596)
T ss_pred cccCCcceeecCCCcchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCC
Confidence 45555544444444666654 7999999999975333444556666763
No 411
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=25.51 E-value=4.8e+02 Score=23.55 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=36.3
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec----CcchhhhHHhhc-cCeeEecCCC
Q 009327 182 GIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP----VCGEKEYYLACA-CEELYAPPSA 241 (537)
Q Consensus 182 aIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~----~AaSgGY~IAsa-aD~I~a~p~s 241 (537)
.-++++..|-|.. +++++++|++.-.+++|+..+++ .++=-....|-. +=.+|-+|+.
T Consensus 34 ~~~i~v~NPpG~I--t~el~~ai~~a~~~~~~~~I~V~GEEDL~~lPail~aP~gs~V~YGQP~e 96 (121)
T PF04019_consen 34 YRVIEVKNPPGTI--TEELIEAIKKALESGKPVVIFVDGEEDLAVLPAILYAPEGSVVLYGQPGE 96 (121)
T ss_pred ceEEEEECCCCcc--cHHHHHHHHHHHhCCCCEEEEEeChHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 4578888887776 56666676665456888888884 344333333322 2266777774
No 412
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=24.85 E-value=3.8e+02 Score=28.48 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=44.1
Q ss_pred CceEEEEE-eCCCCCCHHHHHHHHHHHHHhhhcCCeEE---EEecCcchhhhHHhh--ccC-eeEecCCCe-eEEecccc
Q 009327 179 RIVGIYLH-IEPLSCGWGKVEEIRRHVVDFKKSGKFII---GYVPVCGEKEYYLAC--ACE-ELYAPPSAY-FSLYGLTV 250 (537)
Q Consensus 179 ~IkaIVL~-InSpGG~~~~seeI~~~I~~lr~s~KpVv---a~v~~AaSgGY~IAs--aaD-~I~a~p~s~-iGsiGv~~ 250 (537)
+.+.|+|- =|.|-|.+...++|.+.+..+.+ +..|| ||++.+. ...+.. ..+ .|++--.|. +|+.|+..
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~--~~~~~l~~~~~nlivlRTfSKa~gLAGlRl 221 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIEFSP--ESSLELLKYPPNLIVLRTFSKAFGLAGLRV 221 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCC--chhhhhccCCCCEEEEEecHHhhhcchhce
Confidence 45666665 68899999999999999998755 44444 5676444 222222 344 677765554 66655443
No 413
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=24.32 E-value=2e+02 Score=31.76 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHH-----HHHHHHHHHhhhcCCeEEEEecCcchhhhHHh-hccC
Q 009327 160 SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV-----EEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLA-CACE 233 (537)
Q Consensus 160 ~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~s-----eeI~~~I~~lr~s~KpVva~v~~AaSgGY~IA-saaD 233 (537)
|.-...+|+++|+.+.+.+.+..|++ -=.||++... |.+.++|. ++.+|||+-++.-. -|-|+ -.||
T Consensus 174 G~~A~~eIv~aI~~an~~~~~DvlIV--aRGGGSiEDLW~FNdE~vaRAi~---~s~iPvISAVGHEt--D~tL~DfVAD 246 (440)
T COG1570 174 GEGAAEEIVEAIERANQRGDVDVLIV--ARGGGSIEDLWAFNDEIVARAIA---ASRIPVISAVGHET--DFTLADFVAD 246 (440)
T ss_pred CCCcHHHHHHHHHHhhccCCCCEEEE--ecCcchHHHHhccChHHHHHHHH---hCCCCeEeecccCC--CccHHHhhhh
Confidence 34567899999999999888876654 3356777665 45666666 57899998885321 12232 5688
Q ss_pred eeEecCCC
Q 009327 234 ELYAPPSA 241 (537)
Q Consensus 234 ~I~a~p~s 241 (537)
.....|++
T Consensus 247 ~RApTPTa 254 (440)
T COG1570 247 LRAPTPTA 254 (440)
T ss_pred ccCCCchH
Confidence 88888875
No 414
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=24.11 E-value=2.7e+02 Score=30.67 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhc-----CCeEEEEec-C---cchhhhHHhhcc--
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKS-----GKFIIGYVP-V---CGEKEYYLACAC-- 232 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s-----~KpVva~v~-~---AaSgGY~IAsaa-- 232 (537)
.+.|.++|+++.+.-+.++|++- .|. -.-.-.+.|...++++++. ++||+.+-. . ....||..|..+
T Consensus 77 ~~~L~~aI~~~~~~~~P~~I~V~-ttC-~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a~~al~ 154 (455)
T PRK14476 77 DENVEEAILNICKKAKPKIIGLC-TTG-LTETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAAVEAIV 154 (455)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEe-Ccc-hHhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 36788888888653334555554 322 1112223344444444332 688887653 2 235687777432
Q ss_pred CeeEec------CCCeeEEeccc----ccccchhhHhhhcCcceEEE
Q 009327 233 EELYAP------PSAYFSLYGLT----VQASFLGGVLEKVGIEPQVQ 269 (537)
Q Consensus 233 D~I~a~------p~s~iGsiGv~----~~~~~~~~ll~k~GI~~~~v 269 (537)
+.++-. ..-.+..+|-. .....++.+|+.+|+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~l 201 (455)
T PRK14476 155 EALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPIIL 201 (455)
T ss_pred HHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEEe
Confidence 333321 12346666421 22334788999999998543
No 415
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=24.07 E-value=7.7e+02 Score=25.01 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 166 QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 166 ~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
++......+... +.++++-+|.-.|--.+.+.+++.++ +.++|++.+++
T Consensus 76 df~~~~~~~l~~--aD~ailVVDa~~g~~~~t~~~~~~~~---~~~~p~ivviN 124 (270)
T cd01886 76 DFTIEVERSLRV--LDGAVAVFDAVAGVEPQTETVWRQAD---RYNVPRIAFVN 124 (270)
T ss_pred HHHHHHHHHHHH--cCEEEEEEECCCCCCHHHHHHHHHHH---HcCCCEEEEEE
Confidence 343344444433 34777778876665555666665554 55899998886
No 416
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=24.06 E-value=2.5e+02 Score=26.95 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhh-cCCeEEEEecCcchhhhHHhhccCeeEecCC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKK-SGKFIIGYVPVCGEKEYYLACACEELYAPPS 240 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~-s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~ 240 (537)
.+-+++.++.+..+.=|++..+||-..-.||. |-++++.+|+ .+.||++.- ++.| +--.||.++.+|-
T Consensus 124 VGEE~laEAVkAV~rLpRv~iLVLAGslMGGk------IteaVk~lr~~hgI~VISL~-M~GS----VpdVADlVvtDPv 192 (218)
T COG1707 124 VGEEELAEAVKAVARLPRVGILVLAGSLMGGK------ITEAVKELREEHGIPVISLN-MFGS----VPDVADLVVTDPV 192 (218)
T ss_pred cChHHHHHHHHHHhccccceeEEEecccccch------HHHHHHHHHHhcCCeEEEec-cCCC----CcchhheeecCch
Confidence 45578999999999999999999976666764 4456677766 489998742 3222 1223566666653
No 417
>smart00250 PLEC Plectin repeat.
Probab=23.56 E-value=55 Score=23.00 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=16.2
Q ss_pred ccCcccHHHHHHcCCceee
Q 009327 325 NDGVYKVERLKEEGFITNV 343 (537)
Q Consensus 325 ~g~v~ta~eAle~GLVD~i 343 (537)
.+..++-.||++.||||.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4677899999999999974
No 418
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=23.30 E-value=5.1e+02 Score=29.65 Aligned_cols=172 Identities=13% Similarity=0.026 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCC-CHHHHHHHHHHHHHhhhcCCeEEEEec---CcchhhhHHhh--ccCee
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSC-GWGKVEEIRRHVVDFKKSGKFIIGYVP---VCGEKEYYLAC--ACEEL 235 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG-~~~~seeI~~~I~~lr~s~KpVva~v~---~AaSgGY~IAs--aaD~I 235 (537)
.+.+.+++.++++.+ -.+..|.| -|+-|. ....+.++.++|++. .+.|+-...+ ..+-+.++-|. .||.|
T Consensus 146 ~~~~~~~~~~~~~~~-~Gad~I~i-~Dt~G~~~P~~v~~lv~~lk~~--~~~pi~~H~Hnt~Gla~An~laAveaGa~~v 221 (582)
T TIGR01108 146 HTLETYLDLAEELLE-MGVDSICI-KDMAGILTPKAAYELVSALKKR--FGLPVHLHSHATTGMAEMALLKAIEAGADGI 221 (582)
T ss_pred CCHHHHHHHHHHHHH-cCCCEEEE-CCCCCCcCHHHHHHHHHHHHHh--CCCceEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 356777777776654 34544443 366663 455555555555532 3577766664 34556666553 45555
Q ss_pred EecCCCeeEEecccccccchhhH---hhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009327 236 YAPPSAYFSLYGLTVQASFLGGV---LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST 312 (537)
Q Consensus 236 ~a~p~s~iGsiGv~~~~~~~~~l---l~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~ 312 (537)
=. .++.+|=....+..+.+ |++.|++. .+..+....+.+++.++...|...-.+.
T Consensus 222 d~----ai~GlG~~tGn~~le~vv~~L~~~g~~t------------------gid~~~L~~l~~~~~~v~~~Y~~~~~~~ 279 (582)
T TIGR01108 222 DT----AISSMSGGTSHPPTETMVAALRGTGYDT------------------GLDIELLLEIAAYFREVRKKYSQFEGQL 279 (582)
T ss_pred Ee----ccccccccccChhHHHHHHHHHhcCCCc------------------ccCHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 33 23333334444445554 33333221 2333444444444444433322212223
Q ss_pred cCCCHHHHHHHHccCccc--HHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 313 KGKRKEDIERFINDGVYK--VERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 313 Rg~~~~~v~~~~~g~v~t--a~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
++.+..-+..-+-|+.++ -.|+.++|+-|.+...-+.+..+.+.+|-
T Consensus 280 ~~~~~~v~~~e~pGG~~snl~~ql~~~g~~~~~~~vl~e~~~v~~~lG~ 328 (582)
T TIGR01108 280 KGPDSRILVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGY 328 (582)
T ss_pred cCCCccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 333332222223356554 37899999998875444455566666763
No 419
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=23.14 E-value=2.1e+02 Score=27.55 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 166 QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 166 ~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
-.+.+|++|.++.+ |+-||--|-.-..+..+++++.+.-+++||++|.++
T Consensus 89 i~~~al~rA~~~aD----vIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlH 138 (179)
T COG1618 89 IAIPALRRALEEAD----VIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLH 138 (179)
T ss_pred HhHHHHHHHhhcCC----EEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEe
Confidence 45678888877633 555788787778889999999988789999999886
No 420
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.06 E-value=2.3e+02 Score=30.86 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cC---cchhhhHHhhcc--CeeEe
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PV---CGEKEYYLACAC--EELYA 237 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~---AaSgGY~IAsaa--D~I~a 237 (537)
.+.|.++|+++.+.-+.+.|++ +.|.- .-.-.+.|...++++++.++||+.+- +. ....||..+..+ +...-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V-~ttC~-~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~ 148 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVV-LTGCI-AEIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNNYAGHEIVLKAIIDQYVG 148 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEE-EcCCc-HHHhhcCHHHHHHHhhhcCCCEEEEECCCcCcccccHHHHHHHHHHHHhcc
Confidence 4678888888766434555655 44432 11112334444444545578888764 22 223577655321 11111
Q ss_pred ----cCCCeeEEecccc--------cccchhhHhhhcCcceEEEE
Q 009327 238 ----PPSAYFSLYGLTV--------QASFLGGVLEKVGIEPQVQR 270 (537)
Q Consensus 238 ----~p~s~iGsiGv~~--------~~~~~~~ll~k~GI~~~~v~ 270 (537)
.+.-.+..+|... ....++.+|+++|+++..+-
T Consensus 149 ~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~ 193 (427)
T cd01971 149 QSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILF 193 (427)
T ss_pred CCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEE
Confidence 1223466777532 12337899999999998764
No 421
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=22.90 E-value=79 Score=32.78 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=44.1
Q ss_pred EEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 394 RASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 394 ~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
.+-|++-.+.+| ++++..+++.++|.-+.+++++++.+= .-+| .......+.+++.+.. .+|...-+...+.
T Consensus 181 glGG~~GsGrQ~----~SWIhieD~v~~I~fll~~~~lsGp~N-~taP--~PV~~~~F~~al~r~l-~RP~~~~vP~~~~ 252 (297)
T COG1090 181 GLGGKLGSGRQW----FSWIHIEDLVNAILFLLENEQLSGPFN-LTAP--NPVRNKEFAHALGRAL-HRPAILPVPSFAL 252 (297)
T ss_pred ccCCccCCCCce----eeeeeHHHHHHHHHHHHhCcCCCCccc-ccCC--CcCcHHHHHHHHHHHh-CCCccccCcHHHH
Confidence 345666555544 568889999999999999999887652 2222 1122234444443221 5677777766543
No 422
>PRK14556 pyrH uridylate kinase; Provisional
Probab=22.76 E-value=2.1e+02 Score=29.16 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=61.6
Q ss_pred ceEEEEEeCCC--------CCCHHHHHHHHHHHHHhhhcCCeEEEEec--CcchhhhHH-hhccCeeEecCCCeeEEecc
Q 009327 180 IVGIYLHIEPL--------SCGWGKVEEIRRHVVDFKKSGKFIIGYVP--VCGEKEYYL-ACACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 180 IkaIVL~InSp--------GG~~~~seeI~~~I~~lr~s~KpVva~v~--~AaSgGY~I-AsaaD~I~a~p~s~iGsiGv 248 (537)
-|-|+|++.+- |-+......+.+.|+.+.+.+..|..++. .-+-|...= ....|+..++. +|..+.
T Consensus 15 ~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~---~GmlaT 91 (249)
T PRK14556 15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADS---MGMIAT 91 (249)
T ss_pred hCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhH---HHHHHH
Confidence 46689988651 23456688999999999887776655553 222221111 11244544432 333333
Q ss_pred cccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 249 TVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 249 ~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
.+....+...|++.|+...+...=+.....+|++
T Consensus 92 ~iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~ 125 (249)
T PRK14556 92 MINALALRDMLISEGVDAEVFSAKGVDGLLKVAS 125 (249)
T ss_pred HHHHHHHHHHHHHcCCCeEEeeccccCcCCCCCC
Confidence 4445557899999999999888666666666663
No 423
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=22.75 E-value=2.7e+02 Score=30.73 Aligned_cols=105 Identities=18% Similarity=0.093 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcC-CCCeEEEEeCCC----CCchHHHHHHHHHHHHhcCC-CCEEEEE----CchhhHHHHHHHHhc-
Q 009327 415 GEQLIEKIRKVRESK-RYKAAIIRIDSP----GGDALASDLMWREIRLLSES-KPVIASM----SDVAASGGYYMAMAA- 483 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~-~vraVVL~i~Sp----GG~~~~s~~i~~~i~~~~~~-kPVIA~v----~G~AasgG~~lA~a~- 483 (537)
.+.|.++|+++.+.- +.++|.+-..|+ |-|+. .+.+.++.- .+ +|||..- .|...+.|+.+|.-+
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi~---~v~~e~~~~-~~~~pvv~v~t~gf~g~s~~~G~~~a~~al 184 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTTALIGDDID---AIAREVMEE-IPDVDVFAINAPGFAGPSQSKGHHVANITW 184 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChHHhhccCHH---HHHHHHHHh-cCCCeEEEeeCCCcCCcccchHHHHHHHHH
Confidence 456888888887644 567777765443 33332 233333221 14 8888762 333446788776543
Q ss_pred -CeEE--EcCCc-eeeeeecc---cCcc---cHHHHHHHhCCceEeeccc
Q 009327 484 -GTIL--AENLT-LTGSIGVV---TGKF---NLGKLYEKIGFNKEIISRG 523 (537)
Q Consensus 484 -D~i~--A~p~a-~~GsIGV~---~~~~---~~~~L~~k~G~~~~~i~~g 523 (537)
+..+ +.+.. .-++|-++ .... .+.+|++.+|+++.....|
T Consensus 185 ~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g 234 (457)
T TIGR01284 185 INDKVGTAEPEITTEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTG 234 (457)
T ss_pred HHHHhCccCcccCCCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECC
Confidence 2222 11211 11233333 2223 3668899999999755554
No 424
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=22.73 E-value=2.8e+02 Score=27.93 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=42.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHh------------cCCCCeEEEE-eCCCCCc-----hHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE------------SKRYKAAIIR-IDSPGGD-----ALAS 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~------------d~~vraVVL~-i~SpGG~-----~~~s 448 (537)
+.+||||.+-|+-.. .+...+++.+.. +.+..+||+- ..|.|.. ..+.
T Consensus 2 ~~kvaVi~fpGtN~d--------------~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~ 67 (231)
T COG0047 2 RPKVAVLRFPGTNCD--------------YDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAI 67 (231)
T ss_pred CceEEEEEcCCcCch--------------HHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhh
Confidence 357899998887543 344455553221 1145666663 2344322 2334
Q ss_pred HHHHHHHHHhc-CCCCEEEEECch
Q 009327 449 DLMWREIRLLS-ESKPVIASMSDV 471 (537)
Q Consensus 449 ~~i~~~i~~~~-~~kPVIA~v~G~ 471 (537)
..+.++++++. .++||+-.+||.
T Consensus 68 ~~v~~~v~~~a~~g~~vLGICNGf 91 (231)
T COG0047 68 APVMDEVREFAEKGKPVLGICNGF 91 (231)
T ss_pred HHHHHHHHHHHHCCCeEEEEcchh
Confidence 56777777764 499999999954
No 425
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=22.62 E-value=3.6e+02 Score=30.68 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=50.6
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~~lr~s~KpVv 215 (537)
+++.+.+++|++.-.. .+++.+.+.+..++ +.+.++|+..+ +.=+..+.+.+-+.++++++.++.+.
T Consensus 443 ~~~~v~ri~gplfF~~---------~~~~~~~i~~~~~~-~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~ 510 (554)
T COG0659 443 PGVLVYRLSGPLFFGN---------ADRLERALLGLIEE-RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLL 510 (554)
T ss_pred CCeEEEEecCceEEee---------HHHHHHHHHHHHhc-cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEE
Confidence 4689999999987663 46778878777766 67888888766 44567778888888888877777553
No 426
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=22.61 E-value=3.2e+02 Score=29.62 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=46.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhhhcC--CeEEEEec---Ccch--hhhHHhhccCeeEecCCCeeEEecccccccch
Q 009327 183 IYLHIEPLSCGWGKVEEIRRHVVDFKKSG--KFIIGYVP---VCGE--KEYYLACACEELYAPPSAYFSLYGLTVQASFL 255 (537)
Q Consensus 183 IVL~InSpGG~~~~seeI~~~I~~lr~s~--KpVva~v~---~AaS--gGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~ 255 (537)
+++-||+|+-...-.. .+|+.+ +|+|=|+. -|+. -.--|+.+||.+.+ ..||=
T Consensus 88 ~~i~IDsPdFnl~vak-------~lrk~~p~i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLa-------------ilPFE 147 (381)
T COG0763 88 VLILIDSPDFNLRVAK-------KLRKAGPKIKIIHYVSPSVWAWRPKRAVKIAKYVDHLLA-------------ILPFE 147 (381)
T ss_pred EEEEeCCCCCchHHHH-------HHHHhCCCCCeEEEECcceeeechhhHHHHHHHhhHeee-------------ecCCC
Confidence 5777999998875443 444555 89999984 3653 35788999999886 24555
Q ss_pred hhHhhhcCcceE
Q 009327 256 GGVLEKVGIEPQ 267 (537)
Q Consensus 256 ~~ll~k~GI~~~ 267 (537)
.++++|.|+...
T Consensus 148 ~~~y~k~g~~~~ 159 (381)
T COG0763 148 PAFYDKFGLPCT 159 (381)
T ss_pred HHHHHhcCCCeE
Confidence 677888888733
No 427
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=22.20 E-value=1.2e+02 Score=31.47 Aligned_cols=52 Identities=29% Similarity=0.319 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHH--HHhhhcCCeEEEEecC
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHV--VDFKKSGKFIIGYVPV 220 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I--~~lr~s~KpVva~v~~ 220 (537)
-++=.+.|.+|-.||+|+||+--.- +..+.+ |-..| ..+++.+|+++.|-+.
T Consensus 51 ~~~Ra~dL~~a~~Dp~i~aI~~~rG----G~g~~r-lL~~lD~~~i~~~PK~fiGySDi 104 (308)
T cd07062 51 PEERAEELMAAFADPSIKAIIPTIG----GDDSNE-LLPYLDYELIKKNPKIFIGYSDI 104 (308)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCc----ccCHhh-hhhhcCHHHHhhCCCEEEeccHH
Confidence 3455678889999999999876432 222222 22222 3455778999999884
No 428
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=21.78 E-value=2.9e+02 Score=28.07 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=36.6
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHh----------cCCCceEEEEEeCCCCCCHHHHHH------HHHH
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAA----------YDPRIVGIYLHIEPLSCGWGKVEE------IRRH 203 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~----------~D~~IkaIVL~InSpGG~~~~see------I~~~ 203 (537)
+|.|+.++|.+.+. +++|+++. +=+++.+||| |||....... +.+.
T Consensus 3 ~igVLa~qG~~~e~--------------~~aL~~lG~ev~~v~~~~~L~~~DgLIL----PGGfs~~~~~L~~~~gl~~~ 64 (248)
T PLN02832 3 AIGVLALQGSFNEH--------------IAALRRLGVEAVEVRKPEQLEGVSGLII----PGGESTTMAKLAERHNLFPA 64 (248)
T ss_pred EEEEEeCCCchHHH--------------HHHHHHCCCcEEEeCCHHHhccCCEEEe----CCCHHHHHHHHHhhcchHHH
Confidence 58888888876543 34444331 1134667777 7765444433 4556
Q ss_pred HHHhhhcCCeEEEEe
Q 009327 204 VVDFKKSGKFIIGYV 218 (537)
Q Consensus 204 I~~lr~s~KpVva~v 218 (537)
|+++-+.++||.+..
T Consensus 65 I~~~v~~g~PvLGiC 79 (248)
T PLN02832 65 LREFVKSGKPVWGTC 79 (248)
T ss_pred HHHHHHcCCCEEEEC
Confidence 666655789997754
No 429
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=21.75 E-value=2.1e+02 Score=24.19 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhh-hcCCeEEEEec
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFK-KSGKFIIGYVP 219 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr-~s~KpVva~v~ 219 (537)
+.+++.+.+++..+++++.-|++ .-..++.+.+.+.+++ ++..|+|..+.
T Consensus 26 ~~ee~~~~l~~l~~~~~~gIIii-------~e~~~~~~~~~l~~~~~~~~~P~iv~IP 76 (95)
T PF01990_consen 26 DPEEAEEALKELLKDEDVGIIII-------TEDLAEKIRDELDEYREESSLPLIVEIP 76 (95)
T ss_dssp SHHHHHHHHHHHHHHTTEEEEEE-------EHHHHTTHHHHHHHHHHTSSSSEEEEES
T ss_pred CHHHHHHHHHHHhcCCCccEEEe-------eHHHHHHHHHHHHHHHhccCCceEEEcC
Confidence 35789999999999999877776 3445667888888874 45789999885
No 430
>PRK13695 putative NTPase; Provisional
Probab=21.56 E-value=4.1e+02 Score=24.58 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=39.4
Q ss_pred HHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCee
Q 009327 171 FVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYF 243 (537)
Q Consensus 171 L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~s~i 243 (537)
+..+..++++ |-+|-+|..-.......+.|..+-+.++|++..++.. .++..+|+|...|.+.+
T Consensus 90 ~~~~l~~~~~----lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~-----~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 90 LERALEEADV----IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR-----SVHPFVQEIKSRPGGRV 153 (174)
T ss_pred HHhccCCCCE----EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch-----hhHHHHHHHhccCCcEE
Confidence 3344445554 4466665433444556677776656789999888753 33445788887777543
No 431
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=21.20 E-value=3.2e+02 Score=26.08 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=23.6
Q ss_pred CCceEEEEEeCCCCCCHHHHH------HHHHHHHHhhhcCCeEEEEe
Q 009327 178 PRIVGIYLHIEPLSCGWGKVE------EIRRHVVDFKKSGKFIIGYV 218 (537)
Q Consensus 178 ~~IkaIVL~InSpGG~~~~se------eI~~~I~~lr~s~KpVva~v 218 (537)
++..+|+| |||...... .+.+.|+++-+.++|+++..
T Consensus 35 ~~~d~lii----pGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC 77 (184)
T TIGR03800 35 DEIDGLII----PGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTC 77 (184)
T ss_pred ccCCEEEE----CCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEEC
Confidence 35677777 666543322 24456777767899998765
No 432
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=20.59 E-value=6.4e+02 Score=22.86 Aligned_cols=106 Identities=11% Similarity=0.111 Sum_probs=58.0
Q ss_pred CCCCCccccChhhHHHHHHHHHHHhc----------CCcccc----cCCeEEEEE--EeeeeccCcccccCCCCCHHHHH
Q 009327 105 YPSGEFEYEKFSAWKIFTVKLRMLVA----------FPWERV----RKGSVLTMK--LRGQIADQLKSRFSSGLSLPQIC 168 (537)
Q Consensus 105 ~~~~~~~~v~~~~y~~~~~~~~~~~~----------~~~~~~----~~~~VavI~--l~G~I~~~~~~~~~~~~s~~~l~ 168 (537)
.+..+++.+|+-|-...+...+++.. +|.... ......+|. -+|.+.=+ +..++.+++.
T Consensus 13 ~~~~~initPlIDVvf~LLiFFmvts~~~~~~i~v~LP~a~~~~~~~~~~~~~i~I~~~g~i~~~-----~~~v~~~~L~ 87 (141)
T PRK11267 13 GEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIG-----NDPVTDETMI 87 (141)
T ss_pred CCcCcccCCCHHHHHHHHHHHHHhhhhccccCeeecCCCCCCCCCCCCCCCEEEEEeCCCCEEEC-----CccccHHHHH
Confidence 33467899999888665543333211 122111 111223333 33444321 1346778888
Q ss_pred HHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 169 ENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 169 ~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
+.|+++.....-..|+|+.|. -...+.+.+.+..++++|..=|+++.
T Consensus 88 ~~L~~~~~~~~~~~V~I~aD~----~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 88 TALDALTEGKKDTTIFFRADK----TVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred HHHHHHHhcCCCceEEEEcCC----CCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 888887653333457787764 22345566667777777876666654
No 433
>PRK00766 hypothetical protein; Provisional
Probab=20.48 E-value=2.6e+02 Score=27.33 Aligned_cols=57 Identities=16% Similarity=0.033 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCC-CHHHHHHHHHHHHHhhhcCCeEEEEec-Ccchhh
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSC-GWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKE 225 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG-~~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgG 225 (537)
..+.+++.+.....-++++.|.|..-++|| .+...+.|++.. +.||++++. .-.+.+
T Consensus 55 aT~~i~~mv~~~~~r~~i~~V~L~Git~agFNvvD~~~l~~~t------g~PVI~V~r~~p~~~~ 113 (194)
T PRK00766 55 ATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNVVDIEELYRET------GLPVIVVMRKKPDFEA 113 (194)
T ss_pred HHHHHHHHHHhcccccceEEEEECCEeeeeeEEecHHHHHHHH------CCCEEEEEecCCCHHH
Confidence 345566665554544789999999999886 466677666443 799999985 334444
No 434
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=20.45 E-value=1.1e+03 Score=25.37 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHccCcccH----HHHHHcCCceeecCchHHH
Q 009327 301 IYGNWLDKVSSTKGKRKEDIERFINDGVYKV----ERLKEEGFITNVLYDDEVI 350 (537)
Q Consensus 301 ~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta----~eAle~GLVD~i~~~dd~i 350 (537)
..+.|+..+|+.+++ +|-| +.|+++|=|+.+.=.|+++
T Consensus 258 ~~e~fl~~iak~~~~------------v~YG~~eV~~A~e~GAve~LLv~De~l 299 (352)
T COG1537 258 LVEEFLERLAKDDDK------------VAYGLEEVEKAAEYGAVETLLVTDELL 299 (352)
T ss_pred HHHHHHHHHhcCCCc------------eeEcHHHHHHHHhcCcceeEEeehhhh
Confidence 456777777776533 3333 5689999888886555443
No 435
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=20.41 E-value=1.4e+02 Score=26.47 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCC
Q 009327 160 SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSC 192 (537)
Q Consensus 160 ~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG 192 (537)
...+.+++.+.++++.+|++|.||++..--|.+
T Consensus 68 ~~~~~~el~~~i~~lN~D~~V~GIlvq~PLP~~ 100 (117)
T PF00763_consen 68 EDISEEELLELIEKLNEDPSVHGILVQLPLPKH 100 (117)
T ss_dssp TTSSHHHHHHHHHHHHH-TT-SEEEEESSSSTT
T ss_pred CCcCHHHHHHHHHHHhCCCCCCEEEEcCCCCCC
Confidence 456788999999999999999999999877764
No 436
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=20.40 E-value=2.5e+02 Score=23.68 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHh--cCCCCEEEEECchh
Q 009327 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLL--SESKPVIASMSDVA 472 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~--~~~kPVIA~v~G~A 472 (537)
..+++.++++++.+++++..|++.-+ .++.+.+.+.++ ....|+|..+.+.-
T Consensus 26 ~~ee~~~~l~~l~~~~~~gIIii~e~-------~~~~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 26 DPEEAEEALKELLKDEDVGIIIITED-------LAEKIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp SHHHHHHHHHHHHHHTTEEEEEEEHH-------HHTTHHHHHHHHHHTSSSSEEEEESTTC
T ss_pred CHHHHHHHHHHHhcCCCccEEEeeHH-------HHHHHHHHHHHHHhccCCceEEEcCCCC
Confidence 45789999999998999887777532 234455555555 34899999997654
No 437
>PLN02727 NAD kinase
Probab=20.22 E-value=2.6e+02 Score=33.84 Aligned_cols=62 Identities=16% Similarity=-0.011 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCceEEEEEeCCCCC-CHHHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhc
Q 009327 168 CENFVKAAYDPRIVGIYLHIEPLSC-GWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA 231 (537)
Q Consensus 168 ~~~L~~A~~D~~IkaIVL~InSpGG-~~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsa 231 (537)
...+++|++.-.++-|-+-+.+++. ...+.+++++.+.+ ..++||.++.. .+..+|.++||.
T Consensus 299 ~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~--slpkPVLvHCKSGarRAGamvA~y 362 (986)
T PLN02727 299 QAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSD--SSKKPIYLHSKEGVWRTSAMVSRW 362 (986)
T ss_pred hHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHh--hcCCCEEEECCCCCchHHHHHHHH
Confidence 4456666666788888888866543 56777777777733 35899999996 455777777764
No 438
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=20.15 E-value=2.3e+02 Score=30.76 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhC--CCCCCCCCeeecccccccccccccccCCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHH
Q 009327 347 DEVISMLKERLG--VQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRK 424 (537)
Q Consensus 347 dd~i~~l~~~~g--~~~~~~~~~v~y~~y~~~~~~~~~~~~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~ 424 (537)
.++++.+..-++ +++..+.-+-++.-.+...+|..-.....-.|-++.++ +-.. ...+.+..
T Consensus 94 T~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~-~~g~-----------~~~~~~~~---- 157 (405)
T COG0520 94 TEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD-DDGL-----------LDLDALEK---- 157 (405)
T ss_pred hHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC-CCCC-----------cCHHHHHH----
Confidence 466777766665 33322222333333445556653211112246666654 1110 11233333
Q ss_pred HHhcCCCCeEEEEeCC-CCCchHHHHHHHHHHHHhcCCCCEEEEECchhhHHHHHH---HHhcCeEEEcCCc-eee--ee
Q 009327 425 VRESKRYKAAIIRIDS-PGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYM---AMAAGTILAENLT-LTG--SI 497 (537)
Q Consensus 425 ~~~d~~vraVVL~i~S-pGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~l---A~a~D~i~A~p~a-~~G--sI 497 (537)
.-+++.|.|.+..-| .-|.+..-..|.+..++. + +++.|++.-+-+-.-+ .+.||+.+.+.+= ..| -+
T Consensus 158 -~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~--g--a~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~Gi 232 (405)
T COG0520 158 -LITPKTKLVALSHVSNVTGTVNPVKEIAELAHEH--G--ALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGI 232 (405)
T ss_pred -hcCCCceEEEEECccccccccchHHHHHHHHHHc--C--CEEEEECccccCccCCCchhcCCCEEEEcccccccCCCce
Confidence 236778999997443 346777777888877765 4 5666787665555555 6789999999887 666 59
Q ss_pred ecccCccc
Q 009327 498 GVVTGKFN 505 (537)
Q Consensus 498 GV~~~~~~ 505 (537)
||.+....
T Consensus 233 GvLy~r~~ 240 (405)
T COG0520 233 GVLYVRKE 240 (405)
T ss_pred EEEEEchH
Confidence 99888763
Done!