Query 009328
Match_columns 537
No_of_seqs 282 out of 712
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 23:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 6.5E-38 1.4E-42 305.5 0.3 94 423-516 107-215 (215)
2 PF06507 Auxin_resp: Auxin res 100.0 3.5E-35 7.6E-40 248.9 8.8 80 96-175 1-83 (83)
3 KOG0644 Uncharacterized conser 99.7 3.1E-17 6.8E-22 181.9 5.4 151 41-201 871-1045(1113)
4 PF02362 B3: B3 DNA binding do 99.0 3.3E-10 7.2E-15 96.5 6.3 65 7-71 33-99 (100)
5 PF00564 PB1: PB1 domain; Int 97.0 0.002 4.4E-08 53.4 6.9 67 427-499 3-70 (84)
6 smart00666 PB1 PB1 domain. Pho 96.6 0.009 2E-07 49.4 7.4 65 428-499 4-69 (81)
7 cd06407 PB1_NLP A PB1 domain i 96.5 0.0086 1.9E-07 51.3 7.1 57 427-489 2-58 (82)
8 cd06398 PB1_Joka2 The PB1 doma 96.5 0.0076 1.6E-07 52.6 6.6 65 428-500 3-72 (91)
9 cd05992 PB1 The PB1 domain is 96.5 0.015 3.1E-07 47.9 7.9 65 428-499 3-69 (81)
10 cd06403 PB1_Par6 The PB1 domai 96.2 0.026 5.7E-07 48.3 7.8 72 428-504 3-78 (80)
11 cd06396 PB1_NBR1 The PB1 domai 96.1 0.022 4.9E-07 48.9 7.0 65 428-499 3-68 (81)
12 cd06401 PB1_TFG The PB1 domain 95.2 0.12 2.7E-06 44.5 8.2 71 428-504 3-79 (81)
13 cd06409 PB1_MUG70 The MUG70 pr 94.8 0.046 9.9E-07 47.5 4.7 53 435-489 7-61 (86)
14 cd06404 PB1_aPKC PB1 domain is 94.1 0.17 3.6E-06 43.9 6.4 57 427-489 2-58 (83)
15 cd06408 PB1_NoxR The PB1 domai 93.2 0.25 5.4E-06 43.0 6.0 55 426-489 3-57 (86)
16 cd06402 PB1_p62 The PB1 domain 93.1 0.36 7.9E-06 42.1 7.0 61 427-494 2-68 (87)
17 cd06397 PB1_UP1 Uncharacterize 91.5 0.56 1.2E-05 40.5 6.1 66 428-500 3-69 (82)
18 PRK10737 FKBP-type peptidyl-pr 74.8 11 0.00024 37.5 7.3 102 47-161 2-114 (196)
19 cd06406 PB1_P67 A PB1 domain i 63.7 33 0.00071 29.8 6.9 69 427-503 4-75 (80)
20 PF03754 DUF313: Domain of unk 61.4 8.4 0.00018 35.2 3.2 37 9-45 75-114 (114)
21 smart00743 Agenet Tudor-like d 59.8 14 0.00031 29.0 3.9 38 131-180 2-39 (61)
22 cd06399 PB1_P40 The PB1 domain 56.8 20 0.00043 31.7 4.5 40 442-488 23-62 (92)
23 KOG3207 Beta-tubulin folding c 42.4 21 0.00045 39.9 3.0 42 132-186 3-44 (505)
24 smart00333 TUDOR Tudor domain. 42.2 44 0.00095 25.5 4.0 51 131-197 2-52 (57)
25 PF00788 RA: Ras association ( 41.7 64 0.0014 26.6 5.3 70 425-497 2-77 (93)
26 KOG3938 RGS-GAIP interacting p 41.6 35 0.00077 35.9 4.3 75 432-514 61-143 (334)
27 PF05641 Agenet: Agenet domain 41.3 61 0.0013 26.4 4.9 42 132-182 1-42 (68)
28 PF02513 Spin-Ssty: Spin/Ssty 40.6 42 0.00091 26.7 3.6 32 134-165 1-32 (50)
29 COG1047 SlpA FKBP-type peptidy 32.3 2.2E+02 0.0047 28.1 7.9 103 47-161 2-115 (174)
30 KOG3606 Cell polarity protein 31.5 48 0.001 35.1 3.4 66 440-510 33-102 (358)
31 PF10844 DUF2577: Protein of u 29.5 77 0.0017 28.0 4.0 28 42-69 71-98 (100)
32 PRK14129 heat shock protein Hs 29.2 72 0.0016 29.1 3.7 51 129-196 3-54 (105)
33 PF01878 EVE: EVE domain; Int 27.2 62 0.0013 29.6 3.1 40 33-72 19-65 (143)
34 PF04014 Antitoxin-MazE: Antid 26.9 56 0.0012 24.7 2.3 27 41-67 14-40 (47)
35 cd06410 PB1_UP2 Uncharacterize 26.7 75 0.0016 28.2 3.4 61 431-498 19-79 (97)
36 TIGR01439 lp_hng_hel_AbrB loop 23.9 72 0.0016 22.9 2.4 26 41-66 14-39 (43)
37 PF10411 DsbC_N: Disulfide bon 21.9 64 0.0014 25.6 1.9 17 473-489 34-50 (57)
38 PF06003 SMN: Survival motor n 21.8 98 0.0021 32.0 3.7 56 129-198 66-121 (264)
39 cd06395 PB1_Map2k5 PB1 domain 20.3 1.5E+02 0.0033 26.1 3.9 51 433-489 9-59 (91)
40 PRK15095 FKBP-type peptidyl-pr 20.3 4.9E+02 0.011 24.7 7.8 104 46-161 3-118 (156)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=6.5e-38 Score=305.54 Aligned_cols=94 Identities=46% Similarity=0.802 Sum_probs=0.0
Q ss_pred CCcceeEEEeccceeeeeecCCCCCChHHHHHHHHHHh---hhc----------cc--cCCCCceEEEEecCCCCeEEcc
Q 009328 423 SNRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMF---DIK----------GQ--LHTRTKWEIVYTDDEGDMMLVG 487 (537)
Q Consensus 423 ~~~~~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF---~~~----------g~--l~~~~~~~v~Y~D~eGD~mlvG 487 (537)
..++||||+|||++|||||||++|+||++|+.+|++|| +|. +. |...++|+|||+|+||||||||
T Consensus 107 ~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvG 186 (215)
T PF02309_consen 107 SSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVG 186 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEec
Confidence 46899999999999999999999999999999999999 676 22 3456799999999999999999
Q ss_pred CCChHHHHhcceeEEEeecccccCCCCCC
Q 009328 488 DDPWHEFCNMVKRIFICSSQDVKKMSPGS 516 (537)
Q Consensus 488 D~PW~~F~~~vkri~I~~~~e~~~~~~~~ 516 (537)
||||++||++||||+||+.+|+++|+|++
T Consensus 187 D~PW~~F~~~vkRl~I~~~~e~~~~~~r~ 215 (215)
T PF02309_consen 187 DVPWEEFVKSVKRLRIMKSSEAKGLAPRA 215 (215)
T ss_dssp -----------------------------
T ss_pred CCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence 99999999999999999999999999974
No 2
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors. The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
Probab=100.00 E-value=3.5e-35 Score=248.92 Aligned_cols=80 Identities=55% Similarity=1.010 Sum_probs=78.2
Q ss_pred HHHHHHcCCeeEEEEecCCC--ceeEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeecCCC-CCCCCCcc
Q 009328 96 ASHAVATQTMFVVYYKPRTS--QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSP-HWKDSKWR 172 (537)
Q Consensus 96 A~~a~~t~~~F~V~Y~Pr~s--eFiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp-~wp~S~WR 172 (537)
|+|||+++++|+|+||||++ ||||++++|++||+++|++||||||+||+||+++++|+|||+||++.|| +||+|+||
T Consensus 1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~WR 80 (83)
T PF06507_consen 1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKWR 80 (83)
T ss_pred ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCcc
Confidence 68999999999999999995 9999999999999999999999999999999999999999999999999 99999999
Q ss_pred eee
Q 009328 173 SLK 175 (537)
Q Consensus 173 ~L~ 175 (537)
|||
T Consensus 81 ~Lq 83 (83)
T PF06507_consen 81 MLQ 83 (83)
T ss_pred cCc
Confidence 997
No 3
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=3.1e-17 Score=181.89 Aligned_cols=151 Identities=22% Similarity=0.430 Sum_probs=124.4
Q ss_pred ccccccccCCCCEEEEEecCCCcEEEEEeeccccCC---------------------CCCCcccccCccchhHHHHHHHH
Q 009328 41 TFVTSKRLVAGDTFVFLRGENGELHVGVRCLARQQS---------------------SMPSSVISSQSMHLGVLATASHA 99 (537)
Q Consensus 41 ~FV~~K~L~aGD~VvF~r~~~g~l~vgiRR~~~~~~---------------------~~p~sv~~~~~~~~~vla~A~~a 99 (537)
+|+.+ .||.|+|||+++.++.-.+|+..+..+ ..|.+..+.|+|.|.||+.|.++
T Consensus 871 ryipQ----mgDEViyfrQghqeyl~~~~~n~~~~~~~~p~~~~~v~~~kv~kl~~~~y~~~~~s~c~m~l~~idp~s~~ 946 (1113)
T KOG0644|consen 871 RYIPQ----MGDEVIYFRQGHQEYLEAVRLNNIELNNKEPWNKMAVEICKVEKLVYITYPGSGDSCCKMKLAVIDPASKL 946 (1113)
T ss_pred ccccc----ccceeehhhhhhHHHHhhhhhccccccccCcccccchhhheeeeeeeeeccCCCcchheeeeeeecchhhh
Confidence 45655 899999999988777666665443211 12445667899999999989855
Q ss_pred HHcCCeeEEEEecCCC--ceeEehHHHHHHHcCCCccccEEEEEeecCCC-CCceeeeEEEeeecCCCCCCCCCcceeee
Q 009328 100 VATQTMFVVYYKPRTS--QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDS-PERRFSGTVVGVEDFSPHWKDSKWRSLKV 176 (537)
Q Consensus 100 ~~t~~~F~V~Y~Pr~s--eFiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~-~~~~~~GtI~~v~~~dp~wp~S~WR~L~V 176 (537)
-...|.+.|..... ||+|.++.|++|++++|+.+++||.-+..+-- --+||.|+|.++++.+|.+|+|+|+|+.|
T Consensus 947 --~~k~F~ltlpdlv~fpDFlV~rsrYd~AiQrnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v 1024 (1113)
T KOG0644|consen 947 --MDKSFKLTLPDLVTFPDFLVERSRYDAAIQRNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIV 1024 (1113)
T ss_pred --hhccceeecccccCcchhhhhhhhHHHHHhhccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEE
Confidence 45669999999987 99999999999999999999999998852211 12899999999999999999999999999
Q ss_pred eccCCCCCCCCCCcccCcceecCCC
Q 009328 177 QWDEPASITRPDRVSPWEIEPFVAS 201 (537)
Q Consensus 177 ~WDe~~~~~~~~RVSPWeIEp~~~~ 201 (537)
+||..+ .+.-||||.|++...
T Consensus 1025 ~~~~~e----~~~~spwe~~~i~de 1045 (1113)
T KOG0644|consen 1025 RYDNTE----TELHSPWEMEPIPDE 1045 (1113)
T ss_pred EecCCc----ccccCccccCCCccc
Confidence 999998 478899999998765
No 4
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=99.04 E-value=3.3e-10 Score=96.46 Aligned_cols=65 Identities=34% Similarity=0.476 Sum_probs=52.9
Q ss_pred cceEEEeecCCCceEeeEEEcCCCcceeccccccccccccccCCCCEEEEEecC--CCcEEEEEeec
Q 009328 7 TQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGE--NGELHVGVRCL 71 (537)
Q Consensus 7 ~Q~l~~~D~~G~~W~Fr~~yrg~prrh~LT~GWs~FV~~K~L~aGD~VvF~r~~--~g~l~vgiRR~ 71 (537)
.+++.++|..|+.|.+++.|++.+.+++|+.||..||++++|..||.++|.... ..++.|.|.|+
T Consensus 33 ~~~v~l~~~~g~~W~v~~~~~~~~~~~~l~~GW~~Fv~~n~L~~GD~~~F~~~~~~~~~~~v~i~~~ 99 (100)
T PF02362_consen 33 SREVTLKDPDGRSWPVKLKYRKNSGRYYLTGGWKKFVRDNGLKEGDVCVFELIGNSNFTLKVHIFRK 99 (100)
T ss_dssp -CEEEEEETTTEEEEEEEEEECCTTEEEEETTHHHHHHHCT--TT-EEEEEE-SSSCE-EEEEEE--
T ss_pred CeEEEEEeCCCCEEEEEEEEEccCCeEEECCCHHHHHHHcCCCCCCEEEEEEecCCCceEEEEEEEC
Confidence 568999999999999999999988889999999999999999999999999754 45569999875
No 5
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.05 E-value=0.002 Score=53.38 Aligned_cols=67 Identities=27% Similarity=0.536 Sum_probs=54.3
Q ss_pred eeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC-ChHHHHhcce
Q 009328 427 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD-PWHEFCNMVK 499 (537)
Q Consensus 427 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~-PW~~F~~~vk 499 (537)
-+|++..|. +=|.+.+..--+|++|..++++.|++. ...+.+.|.|.|||+..+.++ =|.+.+..++
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~-----~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~ 70 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL-----DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK 70 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS-----TSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC-----CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence 478999984 444688888889999999999999987 445799999999999888754 4666676664
No 6
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=96.61 E-value=0.009 Score=49.44 Aligned_cols=65 Identities=17% Similarity=0.411 Sum_probs=50.7
Q ss_pred eEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccC-CChHHHHhcce
Q 009328 428 TKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD-DPWHEFCNMVK 499 (537)
Q Consensus 428 vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~vk 499 (537)
+||.-.| -=|.+-+..--+|++|+.++.+.|++.. ..+.|.|+|.|||+..+.+ +=|.+.+.+++
T Consensus 4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~~~-----~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGLDN-----QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCCCC-----CCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence 6787755 3678888889999999999999999753 4579999999999886654 45555555554
No 7
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.55 E-value=0.0086 Score=51.27 Aligned_cols=57 Identities=21% Similarity=0.393 Sum_probs=46.1
Q ss_pred eeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC
Q 009328 427 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 489 (537)
Q Consensus 427 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 489 (537)
-|||...|. -+.+-|..--+|++|.+++.++|++.. ...+.|-|.|.||||..+--+
T Consensus 2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~~----~~~f~LkY~Ddegd~v~ltsd 58 (82)
T cd06407 2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLDD----MSAFDLKYLDDDEEWVLLTCD 58 (82)
T ss_pred EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCCC----CCeeEEEEECCCCCeEEeecH
Confidence 379999886 455666666699999999999999853 357899999999999887544
No 8
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=96.50 E-value=0.0076 Score=52.61 Aligned_cols=65 Identities=25% Similarity=0.502 Sum_probs=52.2
Q ss_pred eEEEeccceeeeeecCC-----CCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCCChHHHHhccee
Q 009328 428 TKVQMQGVAVGRALDLT-----TLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKR 500 (537)
Q Consensus 428 vKV~meG~~vGR~vDLs-----~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~vkr 500 (537)
+||.-+|+ -|++-+. .--+|++|..++++.|.+.. ..++.+.|.|.||||..+-++ .++...+.+
T Consensus 3 vKv~y~~~--~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~----~~~~~l~Y~Dedgd~V~l~~D--~DL~~a~~~ 72 (91)
T cd06398 3 VKVKYGGT--LRRFTFPVAENQLDLNMDGLREKVEELFSLSP----DADLSLTYTDEDGDVVTLVDD--NDLTDAIQY 72 (91)
T ss_pred EEEEeCCE--EEEEEeccccccCCCCHHHHHHHHHHHhCCCC----CCcEEEEEECCCCCEEEEccH--HHHHHHHHH
Confidence 79999986 4555544 35799999999999998754 467899999999999999777 777666554
No 9
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.48 E-value=0.015 Score=47.91 Aligned_cols=65 Identities=20% Similarity=0.475 Sum_probs=49.3
Q ss_pred eEEEeccceeeeeecCC-CCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC-ChHHHHhcce
Q 009328 428 TKVQMQGVAVGRALDLT-TLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD-PWHEFCNMVK 499 (537)
Q Consensus 428 vKV~meG~~vGR~vDLs-~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~-PW~~F~~~vk 499 (537)
+||+-.|.. |.+=+. .--+|++|.+.|.+.|++.. ..+.+.|.|.|||+..+.++ =|++.++.++
T Consensus 3 vK~~~~~~~--~~~~~~~~~~s~~~L~~~i~~~~~~~~-----~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 3 VKVKYGGEI--RRFVVVSRSISFEDLRSKIAEKFGLDA-----VSFKLKYPDEDGDLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEEEecCCC--EEEEEecCCCCHHHHHHHHHHHhCCCC-----CcEEEEeeCCCCCEEEeCCHHHHHHHHHHHh
Confidence 688888742 344444 88899999999999999864 45799999999999988874 4455555544
No 10
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=96.18 E-value=0.026 Score=48.34 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=52.2
Q ss_pred eEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC-ChHHHHhcce---eEEE
Q 009328 428 TKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD-PWHEFCNMVK---RIFI 503 (537)
Q Consensus 428 vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~-PW~~F~~~vk---ri~I 503 (537)
||.+-+++=-==.+|.....+|++++..|++|+.|.+ -.+.|-|+|.+||.+-+-.+ -+..=+.+++ ||.|
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~-----~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~plLRl~i 77 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPN-----VDFLIGYTDPHGDLLPINNDDNFLKALSSANPLLRIFI 77 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCC-----CcEEEEEeCCCCCEecccCcHHHHHHHHcCCCceEEEE
Confidence 5666666432235677778999999999999999976 34799999999999987654 4444455666 4554
Q ss_pred e
Q 009328 504 C 504 (537)
Q Consensus 504 ~ 504 (537)
-
T Consensus 78 q 78 (80)
T cd06403 78 Q 78 (80)
T ss_pred E
Confidence 3
No 11
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.07 E-value=0.022 Score=48.94 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=50.7
Q ss_pred eEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEcc-CCChHHHHhcce
Q 009328 428 TKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVG-DDPWHEFCNMVK 499 (537)
Q Consensus 428 vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvG-D~PW~~F~~~vk 499 (537)
+||.-.|.-+==+++-+..-+|++|..+++++|++. .+.|.|-|.||||.++- |.=.+|.++.+.
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-------~f~lKYlDde~e~v~lssd~eLeE~~rl~~ 68 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-------DIQIKYVDEENEEVSVNSQGEYEEALKSAV 68 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-------cceeEEEcCCCCEEEEEchhhHHHHHHHHH
Confidence 788888876665666666889999999999999998 47899999999998764 333455554443
No 12
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=95.18 E-value=0.12 Score=44.45 Aligned_cols=71 Identities=23% Similarity=0.483 Sum_probs=50.2
Q ss_pred eEEEeccceeeeeecCCCC-CChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCCChHHH-----HhcceeE
Q 009328 428 TKVQMQGVAVGRALDLTTL-VGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEF-----CNMVKRI 501 (537)
Q Consensus 428 vKV~meG~~vGR~vDLs~~-~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F-----~~~vkri 501 (537)
+|+..+| +| |.+=+..- -+|.+|...+.+.|... +...+.+.|.|.|.|||+.-+.+. +++ +...++|
T Consensus 3 iK~~~g~-Di-R~~~~~~~~~t~~~L~~~v~~~F~~~--~~~~~~flIKYkD~dGDlVTIts~--~dL~~A~~~~~~~~l 76 (81)
T cd06401 3 LKAQLGD-DI-RRIPIHNEDITYDELLLMMQRVFRGK--LGSSDDVLIKYKDEDGDLITIFDS--SDLSFAIQCSRILKL 76 (81)
T ss_pred EEEEeCC-eE-EEEeccCccccHHHHHHHHHHHhccc--cCCcccEEEEEECCCCCEEEeccH--HHHHHHHhcCcceEE
Confidence 5666655 45 44544442 39999999999999843 334567899999999999999886 544 4445566
Q ss_pred EEe
Q 009328 502 FIC 504 (537)
Q Consensus 502 ~I~ 504 (537)
+|.
T Consensus 77 ~~~ 79 (81)
T cd06401 77 TLF 79 (81)
T ss_pred EEe
Confidence 553
No 13
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.83 E-value=0.046 Score=47.53 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=41.7
Q ss_pred ceeeeeecCC--CCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC
Q 009328 435 VAVGRALDLT--TLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 489 (537)
Q Consensus 435 ~~vGR~vDLs--~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 489 (537)
.+-||.+=++ ...|+.+|..+..+=|+++... ...+.|.|.|+||||.++--+
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~--~~~~~L~YlDDEgD~VllT~D 61 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDFE--THLYALSYVDDEGDIVLITSD 61 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcccc--CCcccEEEEcCCCCEEEEecc
Confidence 3466665544 4689999999999999988743 456899999999999887544
No 14
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=94.08 E-value=0.17 Score=43.87 Aligned_cols=57 Identities=19% Similarity=0.396 Sum_probs=46.2
Q ss_pred eeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC
Q 009328 427 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 489 (537)
Q Consensus 427 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 489 (537)
-+|++-.|.-+-=.+|. .-+|++|.+++.+||.... ...+++.|.|.|||.--+..+
T Consensus 2 ~~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~~----~q~ft~kw~DEEGDp~tiSS~ 58 (83)
T cd06404 2 RVKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFHN----DQPFTLKWIDEEGDPCTISSQ 58 (83)
T ss_pred eEEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCCC----CCcEEEEEECCCCCceeecCH
Confidence 37899999655555666 6679999999999998744 556899999999999877665
No 15
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=93.16 E-value=0.25 Score=43.05 Aligned_cols=55 Identities=31% Similarity=0.523 Sum_probs=46.3
Q ss_pred ceeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC
Q 009328 426 SRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 489 (537)
Q Consensus 426 ~~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 489 (537)
--|||+-+|. -|.|-+..--+|++|.+++.++|++.. .+.|-|.|. ||+.-++|.
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~~------~~~iKykDE-GD~iti~sq 57 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFKR------RLKIKMKDD-GDMITMGDQ 57 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCCC------ceEEEEEcC-CCCccccCH
Confidence 4689999887 566666677779999999999999953 469999999 999998886
No 16
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=93.14 E-value=0.36 Score=42.10 Aligned_cols=61 Identities=21% Similarity=0.505 Sum_probs=46.0
Q ss_pred eeEEEecc----ceeeeee--cCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCCChHHH
Q 009328 427 RTKVQMQG----VAVGRAL--DLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEF 494 (537)
Q Consensus 427 ~vKV~meG----~~vGR~v--DLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F 494 (537)
.||.+..| ..| |++ |=....+|++|...+.++|..-. ...+.|.|.|.|||..-+..+ +++
T Consensus 2 ~vkayl~~~~~~~EI-RRf~l~~~~~~s~~~L~~~V~~~f~~l~----~~~ftlky~DeeGDlvtIssd--eEL 68 (87)
T cd06402 2 TVKAYLLGKDANAEI-RRFAIDEDVSTSYEYLVEKVAAVFPSLR----GKNFQLFWKDEEGDLVAFSSD--EEL 68 (87)
T ss_pred eEEEeecCCCCccce-EEEEecCCCCcCHHHHHHHHHHHccccC----CCcEEEEEECCCCCEEeecCH--HHH
Confidence 47888877 333 444 44666799999999999995432 356899999999999888776 555
No 17
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=91.51 E-value=0.56 Score=40.53 Aligned_cols=66 Identities=17% Similarity=0.406 Sum_probs=50.4
Q ss_pred eEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEc-cCCChHHHHhccee
Q 009328 428 TKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLV-GDDPWHEFCNMVKR 500 (537)
Q Consensus 428 vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlv-GD~PW~~F~~~vkr 500 (537)
-||.-+| --|++.-..-=+|.+|.++|+.+|.+... + ..|+|.|.+||..-+ -|+=.++|.+-..+
T Consensus 3 fKv~~~g--~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~----~-~~vtYiDeD~D~ITlssd~eL~d~~~~~~~ 69 (82)
T cd06397 3 FKSSFLG--DTRRIVFPDIPTWEALASKLENLYNLPEI----K-VGVTYIDNDNDEITLSSNKELQDFYRLSHR 69 (82)
T ss_pred EEEEeCC--ceEEEecCCCccHHHHHHHHHHHhCCChh----H-eEEEEEcCCCCEEEecchHHHHHHHHhccc
Confidence 3777777 46888888889999999999999998642 2 689999999997654 44555566654444
No 18
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=74.77 E-value=11 Score=37.49 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=66.8
Q ss_pred ccCCCCEEEE---EecCCCcEEEEEeeccccCCCCCCcccccCccchhHHHHHHHHHHcCCeeEEEEecCC------C--
Q 009328 47 RLVAGDTFVF---LRGENGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRT------S-- 115 (537)
Q Consensus 47 ~L~aGD~VvF---~r~~~g~l~vgiRR~~~~~~~~p~sv~~~~~~~~~vla~A~~a~~t~~~F~V~Y~Pr~------s-- 115 (537)
++..|+.|.+ +|.++|+++---+ ...|...+-+...-+--|.+|......|..|+|..-|-. .
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~------~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~l 75 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESP------VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecC------CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHH
Confidence 4556777766 3557788654332 124555444444444456778888999999999976643 2
Q ss_pred ceeEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 116 QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 116 eFiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
-..||++.+... ....+||||.+. +++. .+.++|+.|.+
T Consensus 76 V~~vpr~~F~~~--~~l~~G~~~~~~--~~~G---~~~~~V~ev~~ 114 (196)
T PRK10737 76 VQRVPKDVFMGV--DELQVGMRFLAE--TDQG---PVPVEITAVED 114 (196)
T ss_pred EEEecHHHCCCc--cCCCCCCEEEEe--CCCC---cEEEEEEEEcC
Confidence 567888877432 236899998864 4553 36889999965
No 19
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=63.68 E-value=33 Score=29.78 Aligned_cols=69 Identities=14% Similarity=0.356 Sum_probs=51.6
Q ss_pred eeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCC-CCeEEccCCChHHHHhcce--eEEE
Q 009328 427 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDE-GDMMLVGDDPWHEFCNMVK--RIFI 503 (537)
Q Consensus 427 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~e-GD~mlvGD~PW~~F~~~vk--ri~I 503 (537)
-||||-++ -| .|-...=-+|.+|++.|.+=+.+-++- -+|-|.|.+ |+...++|.=++.-.+.|+ +|+.
T Consensus 4 vvKV~f~~-tI--aIrvp~~~~y~~L~~ki~~kLkl~~e~-----i~LsYkde~s~~~v~l~d~dle~aws~~~~~~lTL 75 (80)
T cd06406 4 VVKVHFKY-TV--AIQVARGLSYATLLQKISSKLELPAEH-----ITLSYKSEASGEDVILSDTNMEDVWSQAKDGCLTL 75 (80)
T ss_pred EEEEEEEE-EE--EEEcCCCCCHHHHHHHHHHHhCCCchh-----cEEEeccCCCCCccCcChHHHHHHHHhhcCCeEEE
Confidence 37999998 34 455556668999999999999885421 378899865 4555559999999888888 6654
No 20
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function.
Probab=61.44 E-value=8.4 Score=35.23 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=30.3
Q ss_pred eEEEeecCCCceEeeEEEcCC---Ccceeccccccccccc
Q 009328 9 ELVAKDLHGYEWRFKHIFRGQ---PRRHLLTTGWSTFVTS 45 (537)
Q Consensus 9 ~l~~~D~~G~~W~Fr~~yrg~---prrh~LT~GWs~FV~~ 45 (537)
++.+.|..+..|.-+.-.|.- .-.|+|++||..+|+.
T Consensus 75 ~V~lvdp~~~~~~m~lkkW~mg~~~~~YvL~~gWn~VV~~ 114 (114)
T PF03754_consen 75 EVILVDPSLRKWTMRLKKWNMGNGTSNYVLNSGWNKVVED 114 (114)
T ss_pred eEEEECCcCcEEEEEEEEecccCCceEEEEEcChHhhccC
Confidence 457889999999988888854 4579999999999863
No 21
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=59.84 E-value=14 Score=28.97 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=29.6
Q ss_pred CCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccC
Q 009328 131 KFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDE 180 (537)
Q Consensus 131 ~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe 180 (537)
.|.+|+++-..++.++ .||.|+|+.+.. -..+.|.-+.
T Consensus 2 ~~~~G~~Ve~~~~~~~---~W~~a~V~~~~~---------~~~~~V~~~~ 39 (61)
T smart00743 2 DFKKGDRVEVFSKEED---SWWEAVVTKVLG---------DGKYLVRYLT 39 (61)
T ss_pred CcCCCCEEEEEECCCC---EEEEEEEEEECC---------CCEEEEEECC
Confidence 5889999999997554 899999999964 2236677665
No 22
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=56.80 E-value=20 Score=31.74 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=32.4
Q ss_pred cCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccC
Q 009328 442 DLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD 488 (537)
Q Consensus 442 DLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD 488 (537)
||+..-.|.+|.....+-|..+. -.+-|+|.|||..-+=|
T Consensus 23 ~l~~~P~~kdLl~lmr~~f~~~d-------IaLNYrD~EGDLIRlld 62 (92)
T cd06399 23 DLSSTPLLKDLLELTRREFQRED-------IALNYRDAEGDLIRLLS 62 (92)
T ss_pred ccccCccHHHHHHHHHHHhchhh-------eeeeeecCCCCEEEEcc
Confidence 78899999999999999998664 36779999999854433
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=42.38 E-value=21 Score=39.93 Aligned_cols=42 Identities=33% Similarity=0.631 Sum_probs=29.6
Q ss_pred CccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCCCCCC
Q 009328 132 FAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITR 186 (537)
Q Consensus 132 w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~ 186 (537)
..+|+|+|..+|- ...+|.|+|.|. ++ +| |.|.||++.-.-+
T Consensus 3 ~~IG~RvkI~~~~---~Tvr~iG~V~g~-------~~-~w--~GvEWDd~~RGKH 44 (505)
T KOG3207|consen 3 MEIGTRVKIGGEI---ATVRYIGEVEGN-------NS-KW--YGVEWDDPVRGKH 44 (505)
T ss_pred eeccceEEEcCEE---EEEEEEEEEcCC-------CC-cc--eeeEecCCCcccc
Confidence 4689999988752 226677777654 33 44 7899999987544
No 24
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=42.16 E-value=44 Score=25.48 Aligned_cols=51 Identities=18% Similarity=0.436 Sum_probs=37.0
Q ss_pred CCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCCCCCCCCCcccCccee
Q 009328 131 KFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEP 197 (537)
Q Consensus 131 ~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp 197 (537)
.|.+|..+..++ .+. .||.|+|+++.. + ..+.|.-++-.. .+-|...+|-+
T Consensus 2 ~~~~G~~~~a~~-~d~---~wyra~I~~~~~------~---~~~~V~f~D~G~---~~~v~~~~l~~ 52 (57)
T smart00333 2 TFKVGDKVAARW-EDG---EWYRARIIKVDG------E---QLYEVFFIDYGN---EEVVPPSDLRP 52 (57)
T ss_pred CCCCCCEEEEEe-CCC---CEEEEEEEEECC------C---CEEEEEEECCCc---cEEEeHHHeec
Confidence 688999999999 544 899999999963 2 567788877543 34555555554
No 25
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=41.66 E-value=64 Score=26.58 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=50.4
Q ss_pred cceeEEEecccee---eeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEE--EecCCCCeEEcc-CCChHHHHhc
Q 009328 425 RSRTKVQMQGVAV---GRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIV--YTDDEGDMMLVG-DDPWHEFCNM 497 (537)
Q Consensus 425 ~~~vKV~meG~~v---GR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~--Y~D~eGD~mlvG-D~PW~~F~~~ 497 (537)
..++||+++...- -++|-++....-.+++..+.+-|++.+ ...+|.|. -........|-. +.|+..+...
T Consensus 2 ~~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~---~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~ 77 (93)
T PF00788_consen 2 SGVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAE---DPSDYCLVEVEESGGEERPLDDDECPLQIQLQW 77 (93)
T ss_dssp EEEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSS---SGGGEEEEEEECTTTEEEEETTTSBHHHHHHTT
T ss_pred CeEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCC---CCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhC
Confidence 3689999988653 689999999999999999999999932 24568884 444555555543 4466555443
No 26
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.61 E-value=35 Score=35.90 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=56.2
Q ss_pred eccceeeeeecCCCCCChHHHHHHHHHHhhhcccc---CCCCceEEEEecCCCCeEEccCCChHHHH-----hcceeEEE
Q 009328 432 MQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQL---HTRTKWEIVYTDDEGDMMLVGDDPWHEFC-----NMVKRIFI 503 (537)
Q Consensus 432 meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l---~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~-----~~vkri~I 503 (537)
-+|.|+|| +..|++-+|||+.+++-|+|...- ..-+.+.| |=+-||-|-.-+++|+ .-.|.+.|
T Consensus 61 AHGSptg~---Ie~fsnv~ELY~kIAe~F~Is~~dIlfcTlNshKv-----DM~~llgGqigleDfiFAHvkGq~kEv~v 132 (334)
T KOG3938|consen 61 AHGSPTGR---IEGFSNVRELYQKIAEAFDISPDDILFCTLNSHKV-----DMKRLLGGQIGLEDFIFAHVKGQAKEVEV 132 (334)
T ss_pred ccCCccce---ecccccHHHHHHHHHHHhcCCccceEEEecCCCcc-----cHHHHhcCccChhhhhhhhhcCcceeEEE
Confidence 36888888 467899999999999999997531 12122222 3345899999999996 55778999
Q ss_pred eecccccCCCC
Q 009328 504 CSSQDVKKMSP 514 (537)
Q Consensus 504 ~~~~e~~~~~~ 514 (537)
++.+++-+++.
T Consensus 133 ~KsedalGlTI 143 (334)
T KOG3938|consen 133 VKSEDALGLTI 143 (334)
T ss_pred EecccccceEE
Confidence 99999987764
No 27
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=41.33 E-value=61 Score=26.41 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=27.2
Q ss_pred CccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCC
Q 009328 132 FAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 182 (537)
Q Consensus 132 w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 182 (537)
|.+|+++-..-+.+...-.||.|||+..... + .+.|+.++-.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~------~---~~~V~Y~~~~ 42 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGD------D---KYLVEYDDLP 42 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT----------EEEEEETT-S
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCC------c---EEEEEECCcc
Confidence 5689999988765554449999999999752 2 7889986554
No 28
>PF02513 Spin-Ssty: Spin/Ssty Family; InterPro: IPR003671 Spindlin (Spin) and Ssty were first identified for their involvement in gametogenesis. Spindlin was identified as a maternal transcript present in the unfertilised egg and early embryo, and was subsequently shown to interact with the spindle apparatus during oogenesis, and may therefore be important for mitosis []. In addition, spindlin appears to be a target for cell cycle-dependent phosphorylation, and as such may play a role in cell cycle regulation during the transition from gamete to embryo []. Ssty is a multi-copy, Y-linked spermatogenesis-specific transcript that appears to be required for normal spermatogenesis []. Ssty may play an analogous role to spindlin in sperm cells, namely during the transition from sperm cells to early embryo, and in mitosis.; GO: 0007276 gamete generation; PDB: 2NS2_A.
Probab=40.56 E-value=42 Score=26.74 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=24.9
Q ss_pred cccEEEEEeecCCCCCceeeeEEEeeecCCCC
Q 009328 134 VGMRYKMRFEGEDSPERRFSGTVVGVEDFSPH 165 (537)
Q Consensus 134 ~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~ 165 (537)
+|-|+.-.||.++.+...+.|+|...-++.|.
T Consensus 1 vGk~Veh~~~~g~g~~s~w~G~Vl~Qvp~~ps 32 (50)
T PF02513_consen 1 VGKRVEHTWEDGDGPKSKWKGMVLHQVPAKPS 32 (50)
T ss_dssp TT-EEEEEECTSTS-EEEEEEEEEEE-TTSTT
T ss_pred CCceEEEEEccCCCcccEEEEEEEEEeecCCc
Confidence 58889999999888888899999999877764
No 29
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.28 E-value=2.2e+02 Score=28.13 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=66.4
Q ss_pred ccCCCCEEEEE---ecCCCcEEEEEeeccccCCCCCCcccccCccchhHHHHHHHHHHcCCeeEEEEecCCC------c-
Q 009328 47 RLVAGDTFVFL---RGENGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRTS------Q- 116 (537)
Q Consensus 47 ~L~aGD~VvF~---r~~~g~l~vgiRR~~~~~~~~p~sv~~~~~~~~~vla~A~~a~~t~~~F~V~Y~Pr~s------e- 116 (537)
++..||.|..- |-++|+++=--.- ...|..++-++..-+.-|.+|......|.-|+|.--|-.. +
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e-----~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~l 76 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDE-----NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDL 76 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccc-----cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHH
Confidence 55677877763 4466765432221 1235444444544445578899999999999999888542 2
Q ss_pred -eeEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 117 -FIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 117 -FiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
=.|+++++...= ...+||+|. ++++| .-.-|+|+.|..
T Consensus 77 vq~vp~~~F~~~~--~~~vGm~~~--~~~~~---~~~~~~V~~V~~ 115 (174)
T COG1047 77 VQRVPRDEFQGVG--ELEVGMEVE--AEGGD---GEIPGVVTEVSG 115 (174)
T ss_pred eEEecHHHhCcCC--CCCCCcEEE--EcCCC---ceeeEEEEEEcC
Confidence 246666665432 789999987 44554 456899999864
No 30
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=31.45 E-value=48 Score=35.08 Aligned_cols=66 Identities=20% Similarity=0.401 Sum_probs=49.5
Q ss_pred eecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEcc-CCChHHHHhcce---eEEEeeccccc
Q 009328 440 ALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVG-DDPWHEFCNMVK---RIFICSSQDVK 510 (537)
Q Consensus 440 ~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvG-D~PW~~F~~~vk---ri~I~~~~e~~ 510 (537)
.++-..-.+|++.+.-|+.+-.|.+ -++.|-|.|.-||.+-+- |+-+..-+++++ ||.|-+++|+.
T Consensus 33 sl~r~~~~~f~~F~~Lv~~~H~i~n-----vdvllgY~d~hgDLLPinNDDn~~ka~~sa~PlLR~~iQkr~ea~ 102 (358)
T KOG3606|consen 33 SLPRHSASSFDEFYSLVEHLHHIPN-----VDVLLGYADTHGDLLPINNDDNLHKALSSARPLLRLLIQKREEAD 102 (358)
T ss_pred cccccCcccHHHHHHHHHHHhcCCC-----ceEEEEEecCCCceecccCchhHHHHhhccCchhhhhhhhhhhhh
Confidence 3445556799999999998887765 346889999999999775 444444455555 88999998875
No 31
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=29.47 E-value=77 Score=27.96 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=23.3
Q ss_pred cccccccCCCCEEEEEecCCCcEEEEEe
Q 009328 42 FVTSKRLVAGDTFVFLRGENGELHVGVR 69 (537)
Q Consensus 42 FV~~K~L~aGD~VvF~r~~~g~l~vgiR 69 (537)
|.-...|++||.|+-+|..+|+.|+=+-
T Consensus 71 i~~~~~Lk~GD~V~ll~~~~gQ~yiVlD 98 (100)
T PF10844_consen 71 ITFTDGLKVGDKVLLLRVQGGQKYIVLD 98 (100)
T ss_pred EEEecCCcCCCEEEEEEecCCCEEEEEE
Confidence 6667789999999999998888776543
No 32
>PRK14129 heat shock protein HspQ; Provisional
Probab=29.20 E-value=72 Score=29.09 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=35.7
Q ss_pred cCCCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCC-CCcceeeeeccCCCCCCCCCCcccCcce
Q 009328 129 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKD-SKWRSLKVQWDEPASITRPDRVSPWEIE 196 (537)
Q Consensus 129 ~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~-S~WR~L~V~WDe~~~~~~~~RVSPWeIE 196 (537)
..+|.+|..+|-+. -.|.|.|+.| ||.+.+ .+| |++-.. .++.|=.||==-
T Consensus 3 ~akF~IGQ~VrHrl-------~~yrGVV~DV---DP~fs~~e~w------~~~ia~-~~p~kdqPwYHv 54 (105)
T PRK14129 3 ASKFGIGQQVRHSL-------LGYLGVVVDI---DPEYSLEEPS------PDELAV-NDELRAAPWYHV 54 (105)
T ss_pred cccccCCcEEEEee-------cCCCeEEEee---CCCcCCCchh------HHhhcc-CCCccCCCceEE
Confidence 56889999999876 4599999987 555543 244 566554 377788888533
No 33
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=27.17 E-value=62 Score=29.63 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=24.5
Q ss_pred eecccccccccc------ccccCCCCEEEEEecC-CCcEEEEEeecc
Q 009328 33 HLLTTGWSTFVT------SKRLVAGDTFVFLRGE-NGELHVGVRCLA 72 (537)
Q Consensus 33 h~LT~GWs~FV~------~K~L~aGD~VvF~r~~-~g~l~vgiRR~~ 72 (537)
|.-+.-|..|.+ -|+++.||.|+|++.. .+.-++|+=+..
T Consensus 19 ~~~~~~~~gv~~~~~~~~l~~mk~GD~vifY~s~~~~~~ivai~~V~ 65 (143)
T PF01878_consen 19 HWGVTVWDGVRNYQARKNLKRMKPGDKVIFYHSGCKERGIVAIGEVV 65 (143)
T ss_dssp HHSEEECHTEEEHHHHHHHHC--TT-EEEEEETSSSS-EEEEEEEEE
T ss_pred ccceEEEcCEeehhhhhhhhcCCCCCEEEEEEcCCCCCEEEEEEEEe
Confidence 334455665555 2589999999999987 567788885443
No 34
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=26.93 E-value=56 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=21.1
Q ss_pred ccccccccCCCCEEEEEecCCCcEEEE
Q 009328 41 TFVTSKRLVAGDTFVFLRGENGELHVG 67 (537)
Q Consensus 41 ~FV~~K~L~aGD~VvF~r~~~g~l~vg 67 (537)
.|...-+|.+||.|.+.-.++|++.+-
T Consensus 14 ~~~~~l~l~~Gd~v~i~~~~~g~i~i~ 40 (47)
T PF04014_consen 14 EIREKLGLKPGDEVEIEVEGDGKIVIR 40 (47)
T ss_dssp HHHHHTTSSTTTEEEEEEETTSEEEEE
T ss_pred HHHHHcCCCCCCEEEEEEeCCCEEEEE
Confidence 345566899999999999988876553
No 35
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=26.68 E-value=75 Score=28.21 Aligned_cols=61 Identities=20% Similarity=0.405 Sum_probs=37.2
Q ss_pred EeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCCChHHHHhcc
Q 009328 431 QMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMV 498 (537)
Q Consensus 431 ~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~v 498 (537)
++.|+ -|-|.+..--+|.||..+|.++|++.... .=+|++-.+|.+ ...-|-++ ++..+|+
T Consensus 19 Y~GG~--tr~i~V~r~~s~~el~~kl~~~~~~~~~~--~lky~Lp~edld-~Lisv~~D--eDl~~M~ 79 (97)
T cd06410 19 YVGGE--TRIVSVDRSISFKELVSKLSELFGAGVVV--TLKYQLPDEDLD-ALISVSND--EDLKNMM 79 (97)
T ss_pred EcCCc--eEEEEEcCCCCHHHHHHHHHHHhCCCCce--EEEEEcCCCCcc-eeEEecCc--HHHHHHH
Confidence 44553 45566666679999999999999987531 113444444443 25555555 4555544
No 36
>TIGR01439 lp_hng_hel_AbrB looped-hinge helix DNA binding domain, AbrB family. This DNA-binding domain family includes AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. This model excludes members of family TIGR02609.
Probab=23.90 E-value=72 Score=22.93 Aligned_cols=26 Identities=27% Similarity=0.412 Sum_probs=21.1
Q ss_pred ccccccccCCCCEEEEEecCCCcEEE
Q 009328 41 TFVTSKRLVAGDTFVFLRGENGELHV 66 (537)
Q Consensus 41 ~FV~~K~L~aGD~VvF~r~~~g~l~v 66 (537)
.|.++-++..||.|.+....+|.|.+
T Consensus 14 ~~r~~l~~~~gd~~~i~~~~~~~l~l 39 (43)
T TIGR01439 14 EIREKLGLKEGDRLEVIRVEDGEIIL 39 (43)
T ss_pred HHHHHcCcCCCCEEEEEEeCCCEEEE
Confidence 56778889999999999877776654
No 37
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=21.90 E-value=64 Score=25.61 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=14.7
Q ss_pred EEEEecCCCCeEEccCC
Q 009328 473 EIVYTDDEGDMMLVGDD 489 (537)
Q Consensus 473 ~v~Y~D~eGD~mlvGD~ 489 (537)
.++|.|.+|+.+++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 68999999999999974
No 38
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=21.83 E-value=98 Score=32.03 Aligned_cols=56 Identities=14% Similarity=0.304 Sum_probs=32.8
Q ss_pred cCCCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCCCCCCCCCcccCcceec
Q 009328 129 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPF 198 (537)
Q Consensus 129 ~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~ 198 (537)
...|.+|++....+..|. .+|.+||.+|...+ ....|+-++=. |.+.|+-=+|.+.
T Consensus 66 ~~~WkvGd~C~A~~s~Dg---~~Y~A~I~~i~~~~--------~~~~V~f~gYg---n~e~v~l~dL~~~ 121 (264)
T PF06003_consen 66 NKKWKVGDKCMAVYSEDG---QYYPATIESIDEED--------GTCVVVFTGYG---NEEEVNLSDLKPS 121 (264)
T ss_dssp TT---TT-EEEEE-TTTS---SEEEEEEEEEETTT--------TEEEEEETTTT---EEEEEEGGGEEET
T ss_pred ccCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEcccC---CeEeeehhhhccc
Confidence 569999999999986554 79999999997422 13337776643 2344444444443
No 39
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=20.33 E-value=1.5e+02 Score=26.07 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=36.3
Q ss_pred ccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC
Q 009328 433 QGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 489 (537)
Q Consensus 433 eG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 489 (537)
+|.++--+||....=++.+++..+.+..-- ..--..-|+|.+||..-|--+
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~------aT~tAFeYEDE~gDRITVRSD 59 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPE------ATTTAFEYEDEDGDRITVRSD 59 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhccc------ccccceeeccccCCeeEecch
Confidence 466788888888888899998887765432 122256799999997666433
No 40
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=20.28 E-value=4.9e+02 Score=24.72 Aligned_cols=104 Identities=12% Similarity=0.212 Sum_probs=64.8
Q ss_pred cccCCCCEEEEE---ecCCCcEEEEEeeccccCCCCCCcc-cccCccchhHHHHHHHHHHcCCeeEEEEecCC------C
Q 009328 46 KRLVAGDTFVFL---RGENGELHVGVRCLARQQSSMPSSV-ISSQSMHLGVLATASHAVATQTMFVVYYKPRT------S 115 (537)
Q Consensus 46 K~L~aGD~VvF~---r~~~g~l~vgiRR~~~~~~~~p~sv-~~~~~~~~~vla~A~~a~~t~~~F~V~Y~Pr~------s 115 (537)
.+...||.|.+. +..+|+++-.-+. .+.|... ++...+..| +.+|......|..++|.--|-. .
T Consensus 3 m~i~~~~~V~v~Y~~~~~dG~v~dst~~-----~~~P~~f~~G~g~vi~g-le~aL~gm~~Ge~~~v~ipp~~ayG~~d~ 76 (156)
T PRK15095 3 ESVQSNSAVLVHFTLKLDDGSTAESTRN-----NGKPALFRLGDGSLSEG-LEQQLLGLKVGDKKTFSLEPEAAFGVPSP 76 (156)
T ss_pred cccCCCCEEEEEEEEEeCCCCEEEECCC-----CCCCEEEEeCCCCccHH-HHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 356788988873 4578887655431 1234332 222223333 4567778888999998865532 2
Q ss_pred --ceeEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 116 --QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 116 --eFiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
-+.|+++.+.+. ....+|+.+.+ ++++- ..+.++|+.|.+
T Consensus 77 ~~v~~vp~~~f~~~--~~~~~G~~~~~--~~~~G--~~~~~~V~~i~~ 118 (156)
T PRK15095 77 DLIQYFSRRDFMDA--GEPEIGAIMLF--TAMDG--SEMPGVIREING 118 (156)
T ss_pred HHEEEecHHHCCcc--cCCCCCCEEEE--ECCCC--CEEEEEEEEEcC
Confidence 567788877543 35789998654 44432 568999999875
Done!