Query 009328
Match_columns 537
No_of_seqs 282 out of 712
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 00:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.7 5.1E-18 1.7E-22 153.1 8.0 72 4-75 48-121 (130)
2 4i1k_A B3 domain-containing tr 98.9 2.3E-09 7.9E-14 98.6 6.2 63 7-72 79-143 (146)
3 1yel_A AT1G16640; CESG, protei 98.6 7E-08 2.4E-12 83.1 6.3 59 8-68 40-98 (104)
4 1wmh_B Partitioning defective- 95.8 0.041 1.4E-06 46.6 8.6 72 426-504 7-84 (86)
5 1vd2_A Protein kinase C, IOTA 95.3 0.043 1.5E-06 46.7 7.3 59 425-489 6-64 (89)
6 2kkc_A Sequestosome-1; P62, PB 92.1 0.24 8.3E-06 43.0 6.0 64 425-494 5-83 (102)
7 1q1o_A Cell division control p 91.7 0.5 1.7E-05 40.9 7.5 74 425-498 5-85 (98)
8 2ktr_A Sequestosome-1; autopha 89.5 0.7 2.4E-05 41.2 6.5 63 424-494 19-98 (117)
9 1oey_A P67-PHOX, neutrophil cy 87.4 2.3 7.8E-05 35.7 8.0 70 427-504 7-79 (83)
10 2bkf_A Zinc-finger protein NBR 81.4 3.9 0.00013 34.7 6.8 66 427-499 8-74 (87)
11 1wj6_A KIAA0049 protein, RSGI 80.6 3.9 0.00013 35.5 6.7 60 427-495 16-75 (101)
12 1pqs_A Cell division control p 78.3 2.8 9.7E-05 34.5 4.9 59 440-498 5-64 (77)
13 1oey_J P40-PHOX, neutrophil cy 74.8 3.1 0.00011 36.4 4.4 51 442-501 28-78 (107)
14 3cgm_A SLYD, peptidyl-prolyl C 62.2 19 0.00065 32.9 7.2 98 48-161 3-110 (158)
15 2kr7_A FKBP-type peptidyl-prol 50.0 63 0.0022 29.0 8.5 103 45-161 4-119 (151)
16 2kfw_A FKBP-type peptidyl-prol 49.8 19 0.00065 34.2 5.1 100 48-161 3-114 (196)
17 2k8i_A SLYD, peptidyl-prolyl C 46.3 64 0.0022 29.7 8.1 100 48-161 3-114 (171)
18 1mhn_A SurviVal motor neuron p 41.6 27 0.00094 26.5 4.0 29 130-161 2-30 (59)
19 3p8d_A Medulloblastoma antigen 40.8 42 0.0014 27.0 5.0 55 128-199 3-57 (67)
20 3s6w_A Tudor domain-containing 39.9 26 0.0009 26.0 3.6 28 131-161 1-28 (54)
21 1e8p_A Endoglucanase, dockerin 39.2 8.2 0.00028 29.1 0.6 15 472-486 19-33 (46)
22 4a4f_A SurviVal of motor neuro 38.9 32 0.0011 26.7 4.0 43 129-182 6-48 (64)
23 2e63_A KIAA1787 protein; struc 34.5 26 0.00089 32.6 3.4 25 45-69 115-139 (170)
24 2jng_A Cullin-7, CUL-7; P53 bi 33.1 26 0.00088 30.6 2.8 70 120-201 10-79 (105)
25 4dt4_A FKBP-type 16 kDa peptid 31.9 1.1E+02 0.0036 28.3 7.1 103 47-161 24-138 (169)
26 2equ_A PHD finger protein 20-l 31.1 44 0.0015 27.1 3.8 40 129-181 7-46 (74)
27 1g5v_A SurviVal motor neuron p 30.5 49 0.0017 27.7 4.1 43 129-182 8-50 (88)
28 3qii_A PHD finger protein 20; 30.1 68 0.0023 27.0 4.8 55 129-200 19-73 (85)
29 3h8z_A FragIle X mental retard 24.9 1.5E+02 0.0051 26.5 6.4 83 105-201 29-120 (128)
30 3pnw_C Tudor domain-containing 24.0 73 0.0025 25.7 3.9 42 130-182 16-57 (77)
31 2cbp_A Cucumber basic protein; 23.7 39 0.0013 28.3 2.3 19 42-60 18-36 (96)
32 3pr9_A FKBP-type peptidyl-prol 23.5 4E+02 0.014 24.0 9.3 102 48-161 2-123 (157)
33 2yue_A Protein neuralized; str 23.0 68 0.0023 29.7 4.0 31 39-69 97-127 (168)
34 2vb2_X Copper protein, cation 22.8 48 0.0017 27.5 2.7 21 45-65 59-80 (88)
35 2qcp_X Cation efflux system pr 22.4 50 0.0017 26.9 2.7 21 45-65 51-72 (80)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.72 E-value=5.1e-18 Score=153.06 Aligned_cols=72 Identities=32% Similarity=0.548 Sum_probs=66.2
Q ss_pred CCCcceEEEeecCCCceEeeEEEcCCCcceeccccccccccccccCCCCEEEEEecCC--CcEEEEEeeccccC
Q 009328 4 STPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGEN--GELHVGVRCLARQQ 75 (537)
Q Consensus 4 ~~P~Q~l~~~D~~G~~W~Fr~~yrg~prrh~LT~GWs~FV~~K~L~aGD~VvF~r~~~--g~l~vgiRR~~~~~ 75 (537)
.++.|+|.++|.+|++|+|||+||+++++|+||+||+.||++|+|++||.|+|+|.++ +.|+|+|||+....
T Consensus 48 ~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 48 SVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp SSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred CCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 4567899999999999999999999999999999999999999999999999999764 57999999988654
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=98.86 E-value=2.3e-09 Score=98.57 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=55.2
Q ss_pred cceEEEeecCCCceEeeEEEcCCCcceeccccccccccccccCCCCEEEEEecCCC--cEEEEEeecc
Q 009328 7 TQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENG--ELHVGVRCLA 72 (537)
Q Consensus 7 ~Q~l~~~D~~G~~W~Fr~~yrg~prrh~LT~GWs~FV~~K~L~aGD~VvF~r~~~g--~l~vgiRR~~ 72 (537)
.+++.+.|. |+.|.|+|+|++. ++.|++||..||++++|++||.++|..-++. .+.|-|-|+.
T Consensus 79 ~~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 79 SGFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp CSEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CeEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 478899997 6999999999984 7999999999999999999999999987765 4778887654
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=98.57 E-value=7e-08 Score=83.15 Aligned_cols=59 Identities=25% Similarity=0.490 Sum_probs=53.0
Q ss_pred ceEEEeecCCCceEeeEEEcCCCcceeccccccccccccccCCCCEEEEEecCCCcEEEEE
Q 009328 8 QELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGV 68 (537)
Q Consensus 8 Q~l~~~D~~G~~W~Fr~~yrg~prrh~LT~GWs~FV~~K~L~aGD~VvF~r~~~g~l~vgi 68 (537)
..+.++|..|+.|++++.++. .+..|+.||.+||++++|..||.++|-..++..+.|-|
T Consensus 40 ~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~L~~GD~lvF~~~~~~~f~V~I 98 (104)
T 1yel_A 40 ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNNLEDGKYLQFIYDRDRTFYVII 98 (104)
T ss_dssp SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHTCCTTCEEEEEECSSSEEEEEE
T ss_pred CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcCCCCCCEEEEEEcCCCeEEEEE
Confidence 678999999999999999875 57899999999999999999999999988887777766
No 4
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.78 E-value=0.041 Score=46.65 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=53.6
Q ss_pred ceeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCCChHHHH---hcce---
Q 009328 426 SRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFC---NMVK--- 499 (537)
Q Consensus 426 ~~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~---~~vk--- 499 (537)
--||.+-+++--==.+|-+...+|++|+..|+++|.+. .-.+.+.|+|.+||++-+-++ ++|. .++|
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----~~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~a~plL 79 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----GLDVLLGYTDAHGDLLPLTND--DSLHRALASGPPPL 79 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----TCCCEEEEECTTSCEEECCSH--HHHHHHTTSSSSCE
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----CCCEEEEEECCCCCEeeecCH--HHHHHHHHhCCCcE
Confidence 45777777753222566667889999999999999853 335899999999999998877 6664 4555
Q ss_pred eEEEe
Q 009328 500 RIFIC 504 (537)
Q Consensus 500 ri~I~ 504 (537)
||+|-
T Consensus 80 Rl~Iq 84 (86)
T 1wmh_B 80 RLLVQ 84 (86)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55553
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.34 E-value=0.043 Score=46.72 Aligned_cols=59 Identities=19% Similarity=0.373 Sum_probs=45.9
Q ss_pred cceeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC
Q 009328 425 RSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 489 (537)
Q Consensus 425 ~~~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 489 (537)
.--||++.+|.-+-=.|+. --+|++|+++|.++|.+.. ...+++.|.|.|||+.-+-.+
T Consensus 6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~----~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN----EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS----SCCEEEEECCSSSCCEECCSH
T ss_pred eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC----CCeEEEEEECCCCCcccccCH
Confidence 4578999999744334444 5699999999999999753 455799999999998776554
No 6
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=92.14 E-value=0.24 Score=43.04 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=46.2
Q ss_pred cceeEEEeccc----eeeeeecCCC-----------CCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCC
Q 009328 425 RSRTKVQMQGV----AVGRALDLTT-----------LVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 489 (537)
Q Consensus 425 ~~~vKV~meG~----~vGR~vDLs~-----------~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 489 (537)
..-||++..|. .-=|++-|.. ..+|++|...+.++|.--. ...+.|.|.|.|||+.-+.++
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~----~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR----PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----SSCEEEEEECTTCCEEEECSH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC----CCcEEEEEECCCCCEEEecCH
Confidence 35689998752 2335555532 2489999999999996211 335899999999999988877
Q ss_pred ChHHH
Q 009328 490 PWHEF 494 (537)
Q Consensus 490 PW~~F 494 (537)
+++
T Consensus 81 --eEL 83 (102)
T 2kkc_A 81 --EEL 83 (102)
T ss_dssp --HHH
T ss_pred --HHH
Confidence 655
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=91.73 E-value=0.5 Score=40.91 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=52.8
Q ss_pred cceeEEEeccce----ee--eeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccC-CChHHHHhc
Q 009328 425 RSRTKVQMQGVA----VG--RALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD-DPWHEFCNM 497 (537)
Q Consensus 425 ~~~vKV~meG~~----vG--R~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~ 497 (537)
.--|||+-++.. ++ |.|=...--+|++|+.++.+-|.+...-.-....++-|+|.|||+..+++ +=|++-+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 356888877421 23 67777788899999999999999861111124468999999999877665 557766666
Q ss_pred c
Q 009328 498 V 498 (537)
Q Consensus 498 v 498 (537)
+
T Consensus 85 ~ 85 (98)
T 1q1o_A 85 L 85 (98)
T ss_dssp H
T ss_pred H
Confidence 5
No 8
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=89.48 E-value=0.7 Score=41.15 Aligned_cols=63 Identities=16% Similarity=0.356 Sum_probs=46.3
Q ss_pred CcceeEEEecc-----ceeeeeecCC-----------CCCChHHHHHHHHHHhh-hccccCCCCceEEEEecCCCCeEEc
Q 009328 424 NRSRTKVQMQG-----VAVGRALDLT-----------TLVGYDHLIDELEEMFD-IKGQLHTRTKWEIVYTDDEGDMMLV 486 (537)
Q Consensus 424 ~~~~vKV~meG-----~~vGR~vDLs-----------~~~sY~eL~~~L~~MF~-~~g~l~~~~~~~v~Y~D~eGD~mlv 486 (537)
...-||++..| ..| |++-|. ...+|++|...+.++|. +.+ ..|.|.|.|.|||+.-+
T Consensus 19 ~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~-----~~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRP-----GGFQAHYRAERGDLVAF 92 (117)
T ss_dssp -CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS-----SCEEEEEECTTCCEEEE
T ss_pred ccEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccccCC-----CcEEEEEECCCCCEEEe
Confidence 45778999974 223 555543 24599999999999994 432 35899999999999888
Q ss_pred cCCChHHH
Q 009328 487 GDDPWHEF 494 (537)
Q Consensus 487 GD~PW~~F 494 (537)
-.+ +++
T Consensus 93 SsD--eEL 98 (117)
T 2ktr_A 93 SSD--EEL 98 (117)
T ss_dssp CSH--HHH
T ss_pred cCH--HHH
Confidence 776 554
No 9
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.44 E-value=2.3 Score=35.67 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=56.0
Q ss_pred eeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEec-CCCCeEEccCCChHHHHhcce--eEEE
Q 009328 427 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTD-DEGDMMLVGDDPWHEFCNMVK--RIFI 503 (537)
Q Consensus 427 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--ri~I 503 (537)
-|||+-+ .--.|....=-+|.+|.+.|.+=+.+.++- -+|-|.| .+|.+++.+|.-+++-..-|+ ||++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~-----~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH-----TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG-----CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce-----eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence 4677776 567788888889999999999999885432 2788999 688888999999998887755 6776
Q ss_pred e
Q 009328 504 C 504 (537)
Q Consensus 504 ~ 504 (537)
+
T Consensus 79 ~ 79 (83)
T 1oey_A 79 W 79 (83)
T ss_dssp E
T ss_pred E
Confidence 5
No 10
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=81.38 E-value=3.9 Score=34.69 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=46.3
Q ss_pred eeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEcc-CCChHHHHhcce
Q 009328 427 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVG-DDPWHEFCNMVK 499 (537)
Q Consensus 427 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvG-D~PW~~F~~~vk 499 (537)
-.||.-.|...-=-|.-..--++++|...+..+|++.. ++|.|.|.|||-.-|- +.=+++=++++.
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~-------~~ikY~DEenD~v~i~Sq~E~eEAlkva~ 74 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------IQIKYLDEENEEVSINSQGEYEEALKMAV 74 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS-------EEEEEECTTSCEEEECSHHHHHHHHHHHH
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc-------eEEEEEcCCCCEEEEecHHHHHHHHHHhc
Confidence 46888888643323533346789999999999999963 6999999999987664 333444444443
No 11
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=80.61 E-value=3.9 Score=35.53 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=45.8
Q ss_pred eeEEEeccceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCCChHHHH
Q 009328 427 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFC 495 (537)
Q Consensus 427 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~ 495 (537)
-.||.-.|+..==-|.-..--++++|...|..+|++.. ++|.|.|.|||-.-| .-..+|-
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~-------~~IkY~DEenD~V~i--~Sq~E~e 75 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------IQIKYLDEENEEVSI--NSQGEYE 75 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS-------BCCEEECTTSCEECC--CSHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc-------eEEEEecCCCCEEEE--ecHHHHH
Confidence 47899999754334644446789999999999999963 589999999999877 3455553
No 12
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=78.31 E-value=2.8 Score=34.54 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=41.5
Q ss_pred eecCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEcc-CCChHHHHhcc
Q 009328 440 ALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVG-DDPWHEFCNMV 498 (537)
Q Consensus 440 ~vDLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvG-D~PW~~F~~~v 498 (537)
.|=...--+|++|+.++.+-|.+.-........++-|+|.|||+...+ |+=|++-+.++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 334445568999999999999975111113456899999999987665 55677777765
No 13
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=74.77 E-value=3.1 Score=36.36 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=39.4
Q ss_pred cCCCCCChHHHHHHHHHHhhhccccCCCCceEEEEecCCCCeEEccCCChHHHHhcceeE
Q 009328 442 DLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRI 501 (537)
Q Consensus 442 DLs~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~vkri 501 (537)
||+.--.|++|+....+-|.-+ +-.+-|+|.|||+.-+=|+ ++--=|+++-
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~-------DIaLNYrD~eGDLIrildd--eDv~lmi~~s 78 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE-------DIALNYRDAEGDLVRLLSD--EDVALMVRQA 78 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS-------SEEEEEECTTSCEEECCSH--HHHHHHHHHC
T ss_pred ccccCCCHHHHHHHHHHHhccc-------ceeeeeecCCCCEEEEcch--HHHHHHHHHh
Confidence 7888889999999999999843 3478899999999777666 5544445443
No 14
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=62.20 E-value=19 Score=32.88 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=63.8
Q ss_pred cCCCCEEEEE-ec-CCCcEEEEEeeccccCCCCCCcccccCccchhHHHHHHHHHHcCCeeEEEEecCC------C--ce
Q 009328 48 LVAGDTFVFL-RG-ENGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRT------S--QF 117 (537)
Q Consensus 48 L~aGD~VvF~-r~-~~g~l~vgiRR~~~~~~~~p~sv~~~~~~~~~vla~A~~a~~t~~~F~V~Y~Pr~------s--eF 117 (537)
...||.|..- ++ .+|+.+-.-+ .... ++...+..| +.+|......|..++|.--|-. . -+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f~-------~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSYL-------HGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEEE-------TTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEEE-------ECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5678888663 22 6787766544 1111 111222223 4667777788998888876642 1 78
Q ss_pred eEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 118 IISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 118 iV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
.|+++.+... ..|.+||+|.+. +++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 8999988532 589999999855 4442 567899999976
No 15
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=49.99 E-value=63 Score=28.95 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=66.6
Q ss_pred ccccCCCCEEEEE-ec--C-CCcEEEEEeeccccCCCCCCccc-ccCccchhHHHHHHHHHHcCCeeEEEEecCC-----
Q 009328 45 SKRLVAGDTFVFL-RG--E-NGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT----- 114 (537)
Q Consensus 45 ~K~L~aGD~VvF~-r~--~-~g~l~vgiRR~~~~~~~~p~sv~-~~~~~~~~vla~A~~a~~t~~~F~V~Y~Pr~----- 114 (537)
.+....||.|.+. .+ . +|+.+-.-+- ..|.... +...+..| +.+|......|..++|.--|-.
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 4567789998774 32 4 7887665531 1232222 22223333 4667777788988888875532
Q ss_pred -C--ceeEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 115 -S--QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 115 -s--eFiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
. -+.|+++.+ . ...+.+||+|.+. +++. ..+.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--GIELEKGMSVFGQ--TEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--TSCCCTTCEEEEE--ETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 2 688999988 1 3589999999854 4443 467899999975
No 16
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=49.80 E-value=19 Score=34.19 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=63.3
Q ss_pred cCCCCEEEEE-e--cCCCcEEEEEeeccccCCCCCCccc-ccCccchhHHHHHHHHHHcCCeeEEEEecCC------C--
Q 009328 48 LVAGDTFVFL-R--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT------S-- 115 (537)
Q Consensus 48 L~aGD~VvF~-r--~~~g~l~vgiRR~~~~~~~~p~sv~-~~~~~~~~vla~A~~a~~t~~~F~V~Y~Pr~------s-- 115 (537)
...||.|.+- + ..+|+++-.-+. ..|...+ ....+..| +.+|......|..++|..-|-. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 5688988763 3 357877665431 1233322 22223333 4667777788888988876643 1
Q ss_pred ceeEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 116 QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 116 eFiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
-+.|+++.+.. ...+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 68888888742 247999999974 45542 57888988864
No 17
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=46.33 E-value=64 Score=29.75 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=63.7
Q ss_pred cCCCCEEEEE-e--cCCCcEEEEEeeccccCCCCCCcc-cccCccchhHHHHHHHHHHcCCeeEEEEecCCC--------
Q 009328 48 LVAGDTFVFL-R--GENGELHVGVRCLARQQSSMPSSV-ISSQSMHLGVLATASHAVATQTMFVVYYKPRTS-------- 115 (537)
Q Consensus 48 L~aGD~VvF~-r--~~~g~l~vgiRR~~~~~~~~p~sv-~~~~~~~~~vla~A~~a~~t~~~F~V~Y~Pr~s-------- 115 (537)
...||.|.+- . ..+|+.+-.-+-. .|... ++...+..| +.+|......|..++|..-|-..
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 5678888763 3 3578876654311 23222 122223233 46677777889888888766431
Q ss_pred ceeEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 116 QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 116 eFiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
-+.|+++.+.. ...+.+||+|.+. +++. . ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~~--~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLAE--TDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEEE--ETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEEE--CCCC--c-EEEEEEEEcC
Confidence 57889998853 3579999999854 4543 3 6899999965
No 18
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=41.65 E-value=27 Score=26.51 Aligned_cols=29 Identities=10% Similarity=0.303 Sum_probs=24.3
Q ss_pred CCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 130 NKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 130 ~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
..|.+|+.+-.+|..|. .||.++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 47999999999995444 899999999964
No 19
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=40.77 E-value=42 Score=26.98 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=39.8
Q ss_pred HcCCCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCCCCCCCCCcccCcceecC
Q 009328 128 VNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFV 199 (537)
Q Consensus 128 ~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 199 (537)
|-..|.+|+++--++ +|- ++|-++|.+|... ..+.|..++.. .+.|..=+|-|+.
T Consensus 3 ~~~~~~vGd~vmArW-~D~---~yYpA~I~si~~~---------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDC---RFYPAKVTAVNKD---------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-TTS---CEEEEEEEEECTT---------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-CCC---CEeeEEEEEECCC---------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 456899999999999 443 8999999999752 46899999832 4556555555543
No 20
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=39.87 E-value=26 Score=26.04 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=22.6
Q ss_pred CCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 131 KFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 131 ~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
.|.+|+..--.|..|. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4999999999995444 899999999963
No 21
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=39.18 E-value=8.2 Score=29.10 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.2
Q ss_pred eEEEEecCCCCeEEc
Q 009328 472 WEIVYTDDEGDMMLV 486 (537)
Q Consensus 472 ~~v~Y~D~eGD~mlv 486 (537)
-.|+|+|.+|+|=.-
T Consensus 19 c~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 19 TKVEYTDASGQWGVQ 33 (46)
T ss_dssp SCEEEEETTEEEEEE
T ss_pred ceEEEEcCCCccccC
Confidence 369999999999653
No 22
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=38.94 E-value=32 Score=26.69 Aligned_cols=43 Identities=5% Similarity=0.224 Sum_probs=32.1
Q ss_pred cCCCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCC
Q 009328 129 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 182 (537)
Q Consensus 129 ~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 182 (537)
...|.+|+.+.-+|..|. .||.++|.+|...+ ....|...+-.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~--------~~~~V~fvdYG 48 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN--------GTAAITFAGYG 48 (64)
T ss_dssp SSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT--------TEEEEEETTTT
T ss_pred CCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEEecC
Confidence 468999999999995444 89999999997421 24667776643
No 23
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.54 E-value=26 Score=32.57 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.9
Q ss_pred ccccCCCCEEEEEecCCCcEEEEEe
Q 009328 45 SKRLVAGDTFVFLRGENGELHVGVR 69 (537)
Q Consensus 45 ~K~L~aGD~VvF~r~~~g~l~vgiR 69 (537)
-..|..||.|-|++..+|+|++.|-
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEES
T ss_pred ccccCCCCEEEEEEcCCcEEEEEEC
Confidence 3467899999999999999999983
No 24
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=33.15 E-value=26 Score=30.63 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=46.1
Q ss_pred ehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCCCCCCCCCcccCcceecC
Q 009328 120 SLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFV 199 (537)
Q Consensus 120 ~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 199 (537)
..+.|-.-++.+..||||+||.=.-|+-+ ..=.|++. ++. + . -+ ..||.|..... .-.|+-=.||.+.
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~-~GD~G~vl-~s~-~-G---l~--~vQv~W~~~G~---TyWV~~~~~Ellg 77 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEIS-AGDEGEFR-QSN-N-G---VP--PVQVFWESTGR---TYWVHWHMLEILG 77 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBC-TTCEEEEE-EEC-T-T---SS--EEEEEETTTTE---EEEEEGGGEEECC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhc-cCCceeEE-ecC-C-C---Cc--cceeeehhcCc---eEEEEeehhhhcC
Confidence 45678888999999999999983222211 12368877 432 2 1 22 89999987653 5567666777765
Q ss_pred CC
Q 009328 200 AS 201 (537)
Q Consensus 200 ~~ 201 (537)
..
T Consensus 78 ~~ 79 (105)
T 2jng_A 78 FE 79 (105)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 25
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=31.92 E-value=1.1e+02 Score=28.34 Aligned_cols=103 Identities=11% Similarity=0.168 Sum_probs=66.7
Q ss_pred ccCCCCEEEEE-e--cCCCcEEEEEeeccccCCCCCCccc-ccCccchhHHHHHHHHHHcCCeeEEEEecCCC-------
Q 009328 47 RLVAGDTFVFL-R--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRTS------- 115 (537)
Q Consensus 47 ~L~aGD~VvF~-r--~~~g~l~vgiRR~~~~~~~~p~sv~-~~~~~~~~vla~A~~a~~t~~~F~V~Y~Pr~s------- 115 (537)
....||.|.+- + -.+|+++-.-+-. +.|.... +...+..| +++|......|..++|..-|-..
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vipG-~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLSEG-LEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSCHH-HHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 57789999873 3 3678876653211 1232221 22222233 56788888899999998766431
Q ss_pred -ceeEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 116 -QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 116 -eFiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
=+.|+++.+.. ...+.+||+|.+. +++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMD--AGEPEIGAIMLFT--AMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTT--TCCCCTTCEEEEE--CTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCC--cCCCCCCcEEEEE--CCCC--CEEEEEEEEEcC
Confidence 47788888764 3468999998764 4442 468899999976
No 26
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.12 E-value=44 Score=27.10 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=32.1
Q ss_pred cCCCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCC
Q 009328 129 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEP 181 (537)
Q Consensus 129 ~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~ 181 (537)
...|.+|+++--+|. |. .||-++|.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DC---RYYPAKIEAINK------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SS---SEEEEEEEEEST------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CC---CEEEEEEEEECC------C---CEEEEEEecC
Confidence 458999999999996 43 899999999963 1 3578888865
No 27
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=30.46 E-value=49 Score=27.65 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=31.0
Q ss_pred cCCCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCC
Q 009328 129 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 182 (537)
Q Consensus 129 ~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 182 (537)
...|.+|+.+.-.|..|. .||.++|.+|.... ....|.-.+=.
T Consensus 8 ~~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~~--------~~~~V~fiDYG 50 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG---CIYPATIASIDFKR--------ETCVVVYTGYG 50 (88)
T ss_dssp -CCCCSSCEEEEECTTTC---CEEEEEEEEEETTT--------TEEEEEETTTC
T ss_pred cCCCCCCCEEEEEECCCC---CEEEEEEEEecCCC--------CEEEEEEecCC
Confidence 458999999999995444 89999999996421 34567775443
No 28
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=30.06 E-value=68 Score=26.97 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=40.0
Q ss_pred cCCCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCCCCCCCCCcccCcceecCC
Q 009328 129 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVA 200 (537)
Q Consensus 129 ~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~~ 200 (537)
...|.+|+++--++ +|- ++|-++|++|... ..+.|.+++.. .+.|.+=+|-|+..
T Consensus 19 ~~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~---------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDC---RFYPAKVTAVNKD---------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp --CCCTTCEEEEEC-TTS---CEEEEEEEEECTT---------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred CcccccCCEEEEEe-CCC---CEeeEEEEEECCC---------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 56899999999999 443 8999999999752 46999999932 45566666666443
No 29
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=24.86 E-value=1.5e+02 Score=26.46 Aligned_cols=83 Identities=10% Similarity=0.117 Sum_probs=47.8
Q ss_pred eeEEEEecC-CCceeEehHHHHH----HHcCCCccccEEEEEeecCCCC-CceeeeEEEeeecCCCCCCCCCcceeeee-
Q 009328 105 MFVVYYKPR-TSQFIISLNKYLE----AVNNKFAVGMRYKMRFEGEDSP-ERRFSGTVVGVEDFSPHWKDSKWRSLKVQ- 177 (537)
Q Consensus 105 ~F~V~Y~Pr-~seFiV~~~~y~~----a~~~~w~~GmRFkM~fE~eD~~-~~~~~GtI~~v~~~dp~wp~S~WR~L~V~- 177 (537)
.+.|.|.-- ..+-.|+.+.++- +.+..+++|+.+...-..+|.. -.||.|+|..+.. ..+.|.
T Consensus 29 ~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg----------~f~~V~y 98 (128)
T 3h8z_A 29 SVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKG----------DFYVIEY 98 (128)
T ss_dssp EEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEET----------TEEEEEE
T ss_pred cEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC----------CEEEEEE
Confidence 477777432 2256666666542 2346899999999988765533 3799999999962 266677
Q ss_pred --ccCCCCCCCCCCcccCcceecCCC
Q 009328 178 --WDEPASITRPDRVSPWEIEPFVAS 201 (537)
Q Consensus 178 --WDe~~~~~~~~RVSPWeIEp~~~~ 201 (537)
||.+- .+-|..=.|.++..+
T Consensus 99 ~~~~~~~----~EiV~~~rlR~~n~~ 120 (128)
T 3h8z_A 99 AACDATY----NEIVTLERLRPVNPN 120 (128)
T ss_dssp TTC--------CEEECGGGEEECCCC
T ss_pred cCCCCCc----ceEEehhheEeCCCC
Confidence 66432 345555555554443
No 30
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=24.04 E-value=73 Score=25.70 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=30.7
Q ss_pred CCCccccEEEEEeecCCCCCceeeeEEEeeecCCCCCCCCCcceeeeeccCCC
Q 009328 130 NKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 182 (537)
Q Consensus 130 ~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 182 (537)
..|.+|+.+--+|..|. .||.++|.+|.... ....|...+-.
T Consensus 16 ~~~kvGd~C~A~ys~Dg---~wYRA~I~~i~~~~--------~~~~V~fvDYG 57 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDN---KFYRAEVEALHSSG--------MTAVVKFIDYG 57 (77)
T ss_dssp TTCCTTCEEEEEETTTT---EEEEEEEEEECTTS--------SEEEEEETTTC
T ss_pred CCCCcCCEEEEEECCCC---CEEEEEEEEEeCCC--------CEEEEEEEcCC
Confidence 47999999999995444 89999999996321 34566665543
No 31
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=23.67 E-value=39 Score=28.33 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.4
Q ss_pred cccccccCCCCEEEEEecC
Q 009328 42 FVTSKRLVAGDTFVFLRGE 60 (537)
Q Consensus 42 FV~~K~L~aGD~VvF~r~~ 60 (537)
-+..|+..+||+++|--..
T Consensus 18 Wa~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTTCCBCTTCEEEEECCT
T ss_pred hccCceEcCCCEEEEEecC
Confidence 3677899999999997543
No 32
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=23.54 E-value=4e+02 Score=23.97 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=62.8
Q ss_pred cCCCCEEEEE---ecCCCcEEEEEeec-cc----c---CCCCCCcc-cccCccchhHHHHHHHHHHcCCeeEEEEecCC-
Q 009328 48 LVAGDTFVFL---RGENGELHVGVRCL-AR----Q---QSSMPSSV-ISSQSMHLGVLATASHAVATQTMFVVYYKPRT- 114 (537)
Q Consensus 48 L~aGD~VvF~---r~~~g~l~vgiRR~-~~----~---~~~~p~sv-~~~~~~~~~vla~A~~a~~t~~~F~V~Y~Pr~- 114 (537)
+..||.|.+- +- +|+++-.-+.. .+ + ....|... ++...+-.| +++|......|..++|+--|-.
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G-~eeaL~gm~~Ge~~~v~Ipp~~a 79 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPG-LDEAILEMDVGEEREVVLPPEKA 79 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHH-HHHHHHHCCTTCEEEEEECGGGT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHH-HHHHHcCCCCCCEEEEEECcHHh
Confidence 3578888773 34 78877654321 00 0 00124332 222233334 4778888899999999865532
Q ss_pred -----C--ceeEehHHHHHHHcCCCccccEEEEEeecCCCCCceeeeEEEeeec
Q 009328 115 -----S--QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 161 (537)
Q Consensus 115 -----s--eFiV~~~~y~~a~~~~w~~GmRFkM~fE~eD~~~~~~~GtI~~v~~ 161 (537)
. =+.|+++.+.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 80 YG~~~~~~V~~v~~~~f~~~-~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 80 FGKRDPSKIKLIPLSEFTKR-GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp TCCCCGGGEEEEEHHHHHHT-TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred cCCCChHhEEEcCHHHCCcc-cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 2 477999988754 456788999975 221 589999975
No 33
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=22.96 E-value=68 Score=29.66 Aligned_cols=31 Identities=10% Similarity=0.362 Sum_probs=24.0
Q ss_pred ccccccccccCCCCEEEEEecCCCcEEEEEe
Q 009328 39 WSTFVTSKRLVAGDTFVFLRGENGELHVGVR 69 (537)
Q Consensus 39 Ws~FV~~K~L~aGD~VvF~r~~~g~l~vgiR 69 (537)
|..-+.++-...||.+.|++..+|+|++.|-
T Consensus 97 W~~~l~~~~~~~g~~l~f~v~~~G~l~~~iN 127 (168)
T 2yue_A 97 WAKALHEQYCEKDNILYYYVNGAGDVIYGIN 127 (168)
T ss_dssp CCEECCSTTCCSSCEEEEEECTTSEEEEEES
T ss_pred EEEEeccccccCCCEEEEEEcCCCEEEEEEC
Confidence 5444444434789999999999999999983
No 34
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=22.77 E-value=48 Score=27.51 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=15.0
Q ss_pred ccccCCCCEEEEEe-cCCCcEE
Q 009328 45 SKRLVAGDTFVFLR-GENGELH 65 (537)
Q Consensus 45 ~K~L~aGD~VvF~r-~~~g~l~ 65 (537)
-++|++||.|-|.- ..+|.+.
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~ 80 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSL 80 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEE
Confidence 46899999999964 3445543
No 35
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.40 E-value=50 Score=26.87 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=14.8
Q ss_pred ccccCCCCEEEEEe-cCCCcEE
Q 009328 45 SKRLVAGDTFVFLR-GENGELH 65 (537)
Q Consensus 45 ~K~L~aGD~VvF~r-~~~g~l~ 65 (537)
-++|++||.|-|.- ..+|.+.
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~ 72 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSL 72 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEE
Confidence 46899999999964 3445543
Done!