BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009329
(537 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=cysS PE=3 SV=1
Length = 493
Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 320/498 (64%), Gaps = 15/498 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L+IYN++T +K+ F P+ PGK GMYVCGVT YD H+GHARA V FD++YRYL +
Sbjct: 1 MALRIYNTLTGEKDTFVPLHPGKAGMYVCGVTVYDYCHIGHARANVVFDVIYRYLGYSGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
VTYVRNFTD+DDKII RAN G + ++S RY + + DMA L PT +P+ +DHM
Sbjct: 61 AVTYVRNFTDIDDKIINRANQEGVDYTTISERYIEAFNQDMARLGLAKPTVEPKATDHMG 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +I +I AY +GDV++AVE P+Y RLSG+ LE+ AG RV VD RKRNP D
Sbjct: 121 GIISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDRKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEPSWDSPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YWMHNG V N+EKMSKSLGNFFTIR++ E+Y P LR F++SAHYRS
Sbjct: 241 QSEAANGCQFVRYWMHNGFVNINSEKMSKSLGNFFTIREVLEQYDPETLRFFILSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALS----PFQEHGKTARINPAAEDCINKLR-- 370
P+++S L+ A + IY L + A+ P Q + A + PA + KL+
Sbjct: 301 PIDFSDQNLNDAQAGLERIYSCLAAVDGAMEGQDVPNQPV-EGAPLPPAGAELHEKLQSL 359
Query: 371 -DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429
F M DD NT+ L G +A++ N + + P L+L+ +R++ E
Sbjct: 360 ISRFREAMDDDFNTAQAL-GVLFEAVRATNRFMAESGDQTPA--TLALLGQVRRLFAETG 416
Query: 430 EVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRA 489
+VL + P A+ E ++Q K + E++ +++ QLI ERAAAR N+DF + D+IR
Sbjct: 417 DVLGLF-TSQPAAWLESIKQAKSDQM---EISPQEIEQLIAERAAARTNRDFKRGDEIRD 472
Query: 490 DLTRKGIALMDMGKETIW 507
L +KGI L+D + T W
Sbjct: 473 LLLQKGIQLLDSPQGTTW 490
>sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 /
DSM 17278 / SZ) GN=cysS PE=3 SV=1
Length = 487
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 236/496 (47%), Positives = 314/496 (63%), Gaps = 15/496 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN+++ +KE F P V GKVGMYVCGVT YD H+GHARA + FD++YRYL
Sbjct: 1 MALRLYNTLSGEKEPFVPRVAGKVGMYVCGVTVYDFCHIGHARAGIVFDMIYRYLRFSGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTY+RN+TD+DDKII RAN G + ++++RY + DM L L PT +P+ +DH+E
Sbjct: 61 DVTYIRNYTDIDDKIINRANQEGTDYRTIADRYIATFDEDMDRLGMLRPTIEPKATDHIE 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +I ++I+N AY V+GDV+FAVE P Y +LSG+ L++ AG RV VD RKRNP D
Sbjct: 121 DIISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNLDDMLAGARVDVDERKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEP W+SPWG GRPGWHIECSAMS +L FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+HNG V N+EKMSKSLGNFFTIR++ E + P LR F++ AHYRS
Sbjct: 241 QSEGANGCQFVKYWLHNGFVNINSEKMSKSLGNFFTIREVLELFDPETLRFFILQAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA----EDCINKLRDE 372
PL+YS L A + IY+ L + AL E TA PA+ + + L
Sbjct: 301 PLDYSDQNLREAQAGLSRIYEALAALDQAL----EKPATAIHLPASAAEFAEKVAGLLPR 356
Query: 373 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVL 432
F M DD NT+ L G D+++ +N L + + +E LR E+ VL
Sbjct: 357 FREAMDDDFNTAQAL-GTLFDSIRTLNRLLA--EGGGSSSASRADLEQLRAAVTEIGAVL 413
Query: 433 RILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLT 492
+ + P S+ L + + + E++ E++ LI ERAAARKNKDF +SD+IR L
Sbjct: 414 GLFRIKP----SDWLAAREAEKARHLEISPEEIEGLIVERAAARKNKDFKRSDEIRDYLL 469
Query: 493 RKGIALMDMGKETIWR 508
+ I L+D + T W+
Sbjct: 470 SRDIQLVDTPQGTAWK 485
>sp|A0LIR9|SYC_SYNFM Cysteine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=cysS PE=3 SV=1
Length = 493
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/499 (46%), Positives = 314/499 (62%), Gaps = 15/499 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L +YN++T+ KE F P+ PGKV YVCGVT YDLSH+GHAR+A+ FD++YRYL L
Sbjct: 1 MVLHVYNTLTKSKEEFIPLEPGKVKFYVCGVTVYDLSHIGHARSAIVFDVIYRYLRFLGF 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTYVRNFTDVDDKIIRRAND G + S++ RY + DM L L P +P ++++
Sbjct: 61 EVTYVRNFTDVDDKIIRRANDAGTDCRSIAQRYIAAFYEDMDALGVLRPDLEPLATENVP 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+ ++I +++ AY DVFF +EK P YG+LSG+++E+ AG RV VD+RKRNP D
Sbjct: 121 GMIEIIRVLMDKGIAYQAGADVFFEIEKFPGYGKLSGRQIEDMLAGARVEVDARKRNPLD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
F LWK +K GEPSWDSPWGPGRPGWHIECSAM + +L FDIHGGG DLIFPHHENEIA
Sbjct: 181 FVLWKGSKPGEPSWDSPWGPGRPGWHIECSAMGSRFLGKTFDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YW+HNG V NNEKMSKSLGNF TIR + ++ HP +R F++S HYRS
Sbjct: 241 QSEAAFGMPFVRYWLHNGFVNINNEKMSKSLGNFLTIRDVLQKVHPETVRFFVLSKHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALS-----PFQEHGKTARINPAAEDCINKLRD 371
P+++S + A + +Y TL + + FQE + +P D I L
Sbjct: 301 PVDFSDETIGEAEKGLERLYGTLGAVKERAAAGVEEAFQEKALRGQ-DPELFDQIAALSG 359
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
F M +D NT+ L F + + L+ +KQ K +L R + +++
Sbjct: 360 AFREAMDNDFNTAQALGNLFS-LQRHLQRFLDKFGRKQLKGPASALA---RAGADAIRDH 415
Query: 432 LRILGLLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRA 489
+LGLL P A+ + LK +K LTE +V + IE R AR++K+F+++D++R
Sbjct: 416 ALVLGLLTREPEAFQAEQRSLK---IKSTGLTEAEVERCIELRRQARQDKNFAEADRLRE 472
Query: 490 DLTRKGIALMDMGKETIWR 508
++ +KGI L D T WR
Sbjct: 473 EIEKKGIQLEDSPAGTRWR 491
>sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1
Length = 485
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/494 (45%), Positives = 313/494 (63%), Gaps = 13/494 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
++L++YN+++ KE FTP+VPG+V MYVCGVT YD H+GHARA V FD++YRYL H
Sbjct: 1 MSLRVYNTLSGTKEEFTPLVPGRVSMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN+TDVDDKII RAN G ++S R+ E+ DMA L PT+QP+ ++H+
Sbjct: 61 DVTYVRNYTDVDDKIINRANQEGVPYNAISERFIAEFDRDMAALGLDLPTHQPKATEHIA 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
++ D+I+++I AY +GDV+F VEK Y +LS + L+ +AG R+ V +KR+P D
Sbjct: 121 EMIDVISRLIEKGFAYAADGDVYFCVEKFDPYLKLSKRNLDEMQAGARIEVGEKKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEP W+SPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPFWESPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA YW+HNG V N+EKMSKSLGNFFTI+++ E+Y LR FL+SAHYRS
Sbjct: 241 QSEAANGKPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEVLEKYDAEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
P+++S L A + IY TL + L+ E AE + + F
Sbjct: 301 PIDFSDQNLREAEAGLERIYGTLAGIDENLTKGAEGTAEETDRELAEKAVT-FPERFREA 359
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L F + S+ +L + + +L+ R + +++V +LG
Sbjct: 360 MDDDFNTAQALGFVFD----LVRSANRVLGEGKGGGSNRALLAEAR---DRIRKVGAVLG 412
Query: 437 LLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRK 494
+ P A++E +LK++ +T E++ +LI ER AAR N+DF ++D+IR L K
Sbjct: 413 IFTSEPRAFAE---RLKNRKAAELPITAEEIERLIAERIAARANRDFKRADEIRDSLAAK 469
Query: 495 GIALMDMGKETIWR 508
GI L+D + T W+
Sbjct: 470 GIMLLDSPQGTTWK 483
>sp|Q3J8Y9|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=cysS PE=3 SV=1
Length = 485
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/502 (47%), Positives = 308/502 (61%), Gaps = 32/502 (6%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L+IYNS+T++KE F PI GKV MYVCG+T YDL H+GHAR V FD++ RYL EV
Sbjct: 2 LRIYNSLTRRKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDMVVRYLRASGFEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TD+DDKII RAN+ GE+ +L+ RY Q D A LQ LPP +PR ++ ME I
Sbjct: 62 IYVRNITDIDDKIIHRANERGESIHTLTARYIQALHEDEASLQILPPDREPRATESMEAI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
M+ Q+++ AY E GD+++ V YG LSG+ LE+ RAGERV V+ K +P DF
Sbjct: 122 LAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHLEDLRAGERVQVNEAKTDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK+GEP+W+SPWGPGRPGWHIECSAMS L + FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA V+YWMHNG V N+EKMSKSLGNFFT+R++ E YHP LR+F++S+HYRSP
Sbjct: 242 SEAATGGKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREVLEHYHPEVLRYFILSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNY+ QLD+A A+ +Y L+ G + + + + R+ M
Sbjct: 302 LNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLSWEFTDGGDPFVLRFREA----M 357
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT L L + +LN ++ ++ SL LR + ILGL
Sbjct: 358 DDDFNTPEALA-----LLNEVRHALNRAREAGDTEKGQSLAVLLRSLGG-------ILGL 405
Query: 438 LPPGAYSEVLQQLKDK-----------ALKRAELTEEDVLQLIEERAAARKNKDFSKSDQ 486
L E Q L+D A + A L+ + + QL+ +R ARKNKD++++D+
Sbjct: 406 LA----HEPEQFLRDSRQVAAIPDTAAAGEEAVLSHDGIEQLVAQRTVARKNKDWAEADR 461
Query: 487 IRADLTRKGIALMDMGKETIWR 508
IR L +GI L D T+WR
Sbjct: 462 IRGILKDQGITLEDTAAGTLWR 483
>sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 /
Gra Bd 1) GN=cysS PE=3 SV=1
Length = 481
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/499 (46%), Positives = 315/499 (63%), Gaps = 27/499 (5%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
++L++YN+MT +KE F P+ PGKVGMYVCGVT YD H+GHARA V FD++YRYL+ +
Sbjct: 1 MSLRVYNTMTGRKEEFEPLQPGKVGMYVCGVTVYDYCHIGHARANVVFDIIYRYLQFIGF 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN+TDVDDKII+RAN+ G + +L+ + Q + DM L PT QP+ + H++
Sbjct: 61 DVTYVRNYTDVDDKIIKRANERGISSDTLAGEFIQAFDEDMNRLGLAEPTIQPKATCHID 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +++ ++I+ AY +GDV+F+VE P+Y +LS + ++ R+G R+ +KRNP D
Sbjct: 121 HIVNLVQRLIDRGIAYESQGDVYFSVEDFPSYLKLSKRNMDEMRSGARITPGEQKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWKAAK GEPSW+SPWGPGRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKAAKPGEPSWESPWGPGRPGWHIECSAMSMEYLGESFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+HNG V N EKMSKSLGNFFTIR I + Y P LR F+++AHYRS
Sbjct: 241 QSEGATGKPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDILQTYDPEVLRFFILTAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA-------EDCINKL 369
P+++S Q LQD + LS F E A AA + L
Sbjct: 301 PIDFSD--------------QNLQDARLGLSRFYEGLHAASEVLAACPPGDVTSEAGATL 346
Query: 370 RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429
+ F M DD NT+ + G DA++ IN L K + +++++ + +L ++
Sbjct: 347 ENVFREAMDDDFNTAAAI-GHLFDAVRTIN-RLITEKGFRKNREKVAQVRALYDALLKLG 404
Query: 430 EVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRA 489
VL + + P A+ L+Q+ L TE D+ I +R ARKNKDF+++D+IR
Sbjct: 405 GVLGLF-VSDPAAW---LKQMNLAMLATTGYTESDIEDFIRQRQEARKNKDFARADEIRD 460
Query: 490 DLTRKGIALMDMGKETIWR 508
+L KGI L+D + T W+
Sbjct: 461 ELAAKGIQLLDGPQGTAWK 479
>sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=cysS PE=3 SV=1
Length = 489
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/496 (44%), Positives = 320/496 (64%), Gaps = 18/496 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ +++YN+++ +KE PI P V +YVCG+T+YD H+GHAR+A++FD++ RYL +L
Sbjct: 1 MDIRVYNTLSGKKEPLQPIEPNHVKLYVCGITSYDYCHIGHARSALAFDMIVRYLRYLDY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VT+VRNFTD+DDKII RAN+ G +L+ R+ E+ DM +L L P +P+ ++H++
Sbjct: 61 KVTFVRNFTDIDDKIIARANETGVTAQALAERFIDEFHTDMDNLGTLRPDIEPKATEHIQ 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
++ D+I ++++ D AY GDV++ V P YG+LSG+ +E+ +AG R++++ +KRNP D
Sbjct: 121 EMIDIIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNIEDMQAGARISINEQKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWKA+K GEPSW+SPWGPGRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGENFDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A + W+H+G VT +EKMSKSLGNF TI+ I + YHP LR F+ S YR+
Sbjct: 241 QSEGANGKPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDILDHYHPEILRAFIFSTQYRN 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPA---AEDC--INKLRD 371
PL++S + + A A+ +Y+ L D Q+ K PA A+D +N +
Sbjct: 301 PLDFSEIAMQDAETALVRLYECLHD-------IQQLAKGDPTLPALISAKDAAKLNSIET 353
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
F M++D NT+ L G DA+K IN + L P + +++ + ++++
Sbjct: 354 RFQEAMNNDFNTALAL-GVLYDAIKIINRAQRALTDT-PSALDVKMLKGSMTL---IQKL 408
Query: 432 LRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADL 491
I+GLL A + LQQ K+K L ++TE ++ I++R AR NKD+++SD+IR L
Sbjct: 409 AGIVGLLQEDA-NLFLQQRKEKMLSGIDITEAEIESYIQQRLDARANKDWARSDEIRDIL 467
Query: 492 TRKGIALMDMGKETIW 507
KGI L D T W
Sbjct: 468 LEKGITLKDGADGTGW 483
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4)
GN=cysS PE=3 SV=1
Length = 494
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/498 (46%), Positives = 313/498 (62%), Gaps = 14/498 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN++T KE F PI PGKV MYVCGVT YD H+GHARA V FD++YRYL L
Sbjct: 1 MALRVYNTLTGTKEDFVPIEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYLRSLGL 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EV YVRN+TD+DDKII RAN G ++S R+ +E+ DMA L L PT QP+ ++H+
Sbjct: 61 EVNYVRNYTDIDDKIINRANREGVAYDAISERFIKEFDRDMAQLGLLLPTSQPKATEHIP 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+I ++ +I+ AY + GDV F VEK Y +LS + LE+ +AG R+ VD RKR+P D
Sbjct: 121 EIITLVQTLIDKGFAYQMGGDVNFCVEKFDPYLKLSKRNLEDMQAGARIEVDERKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
F LWK AK GEP W+SPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FVLWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YW+HNG V N+EKMSKSLGNFFTI+++ ++Y LR FL+SAHYRS
Sbjct: 241 QSEAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEVLDKYDSEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG----KTARINPAAEDCINK---L 369
PL++S L A + IY+ L + L+ G + + A + +K L
Sbjct: 301 PLDFSDQNLTEAETGMERIYKALVAIDETLASNPATGGEEIDASSLGEAERELFDKSGSL 360
Query: 370 RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429
F M DD NT+ + G D ++ +N L+ + K++ +L +++ +
Sbjct: 361 PLRFREAMDDDFNTA-LAMGHIFDLVRCVNRVLS-----EAKERSNTLSALCAQVKANIG 414
Query: 430 EVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRA 489
++ +LG+ S +L +LKD+ +++ E++ +LI ERAAARK KDF +SD+IR
Sbjct: 415 KIADVLGIFTSEPAS-LLTRLKDRKASELDISVEEIERLITERAAARKAKDFKRSDEIRD 473
Query: 490 DLTRKGIALMDMGKETIW 507
L K I L+D + T W
Sbjct: 474 FLLGKNIVLLDSAQGTSW 491
>sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3
SV=1
Length = 494
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/500 (46%), Positives = 313/500 (62%), Gaps = 18/500 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN+++ KE F P+ PGKV MYVCGVT YD H+GHARA V FD++YRY HL
Sbjct: 1 MGLRVYNTLSGNKEEFVPVEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYFCHLGL 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN+TD+DDKII RAN G +S R+ +E+ DM L PT QP+ ++H++
Sbjct: 61 DVTYVRNYTDIDDKIINRANREGVTYDLISERFIKEFDRDMERLGLKLPTCQPKATEHID 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+I ++ +I+ D AY GDV F VEK +Y +LSG+ LE+ +AG R+ VD RKR+P D
Sbjct: 121 EIISLVQTLIDKDFAYQAGGDVNFCVEKFDSYLKLSGRTLEDMQAGARIEVDERKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECSAMS YL + FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGTTFDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V+YW+HNG V N+EKMSKSLGNFFTI+++ +RY LR FL+SAHYRS
Sbjct: 241 QSEAATGKPFVNYWLHNGFVNINSEKMSKSLGNFFTIKEVLDRYDNEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT------ARINPAAEDCINK-- 368
P+++S L A + IY+ L E L+ +G T + +N A + +K
Sbjct: 301 PIDFSDQNLTEAEAGLERIYKALAAVEETLAA--GNGCTGAPVDASSLNEAEGELFDKTT 358
Query: 369 -LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENE 427
+ F M DD NT+ + F D ++ +N L+ L + I+ E
Sbjct: 359 SISARFGEAMDDDFNTALAMAHVF-DLVRCVNRVLSETAGASDNICSLCTL-----IKAE 412
Query: 428 VKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQI 487
V ++ +LG+ S L++LK + ++ +++ +LI ER AARK KDF +SD+I
Sbjct: 413 VAKIAGVLGIFSSKPAS-FLERLKSRKAGNLDIAVDEIERLIAERTAARKAKDFKRSDEI 471
Query: 488 RADLTRKGIALMDMGKETIW 507
R L K I L+D + T W
Sbjct: 472 RDQLAAKNIVLLDSQQGTTW 491
>sp|B8GNT5|SYC_THISH Cysteine--tRNA ligase OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=cysS PE=3 SV=1
Length = 460
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/491 (46%), Positives = 298/491 (60%), Gaps = 35/491 (7%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L+I+NS+T++KE FTP+ PG+V MYVCG+T YD HLGHAR V FD++YRYL+ L +V
Sbjct: 2 LQIHNSLTRRKETFTPMEPGRVRMYVCGMTVYDYCHLGHARVLVVFDVVYRYLKALGFDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TY+RN TD+DDKIIRRA + GE+ +L++R+ D L LPP+ +PR ++H++ +
Sbjct: 62 TYIRNITDIDDKIIRRAAENGEDIRALTDRFIAAMHEDAEALGVLPPSAEPRATEHIDGM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI ++ AY + GDV++AV K YGRLSG+RLE+ RAGERVA D KR+P DF
Sbjct: 122 LAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSGKRLEDLRAGERVAPDEAKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GEP+WDSPWGPGRPGWHIECSAMS HYL + FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYLGNHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA + V+YWMHNG V N EKMSKSLGNFFT+R++ RY +R+F++S+HYRSP
Sbjct: 242 SEAATCEHFVNYWMHNGFVRVNEEKMSKSLGNFFTVREVLARYPAEVVRYFILSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS LD+A + +Y L+ + ++PA + R F A M
Sbjct: 302 LNYSDEPLDAARAGLTRLYTALRGVQA-------------VDPAGQG--EGYRRRFQAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F I LN L+ + P
Sbjct: 347 DDDFNTPVAMAVLFD-----IARELNRLRDEDPAGAAPLAGLLRELGGMLGLLAGDPEAF 401
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497
L G + +L E + LI +R AARK KDF+++D+IR +L +G+
Sbjct: 402 LKGG--------------EAGDLDEAAIEALIAQRLAARKAKDFAEADRIRDELAGQGVV 447
Query: 498 LMDMGKETIWR 508
L D T WR
Sbjct: 448 LEDGPGGTTWR 458
>sp|C6E7P0|SYC_GEOSM Cysteine--tRNA ligase OS=Geobacter sp. (strain M21) GN=cysS PE=3
SV=1
Length = 480
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/494 (46%), Positives = 305/494 (61%), Gaps = 18/494 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN++T KE F PI PGKVGMYVCGVT YD H+GHARA V FD++YR+L
Sbjct: 1 MPLRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRHLLSKGL 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTYVRN+TD+DDKII RAN G +S R+ +E+ DMA L PT+QP+ ++H+
Sbjct: 61 EVTYVRNYTDIDDKIINRANRDGVAYNEISERFIKEFDNDMARLMLQLPTFQPKATEHIP 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+I +++ ++I+ AY DVF+ V++ Y +LS + LE+ +AG R+ VD RK +P D
Sbjct: 121 EIINLVQKLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVDERKEHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECSAMS +L DIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YW+HNG V N+EKMSKSLGNFFTI++I E Y LR FL+SAHYRS
Sbjct: 241 QSEAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEILESYDAEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
P+++S L A + IY+ L + L+ H N + + F
Sbjct: 301 PIDFSDQNLKEAELGLERIYKALAGIDERLAS-GAHTPADADNTEFAEKVAGFAGRFGDA 359
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L G D ++ IN L L+E K++ EV ++ +LG
Sbjct: 360 MDDDFNTALAL-GHLFDLVRVINREL--------PTASTGLLE---KVKAEVAKMAAVLG 407
Query: 437 LLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRK 494
+ P A+ LQ++KD+ E++ E++ LI ERA ARK K+F + D+IR L K
Sbjct: 408 ICDSVPAAF---LQRMKDRKTSDMEMSAEEIETLIAERAEARKAKNFKRGDEIRDLLLEK 464
Query: 495 GIALMDMGKETIWR 508
I L+D + T W+
Sbjct: 465 NIVLLDSAQGTTWK 478
>sp|Q31H54|SYC_THICR Cysteine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysS PE=3 SV=1
Length = 456
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/493 (47%), Positives = 310/493 (62%), Gaps = 40/493 (8%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ LKIYN+ T+QKE FTPI P KVG+YVCGVT YD H+GHAR V FD + R+L L
Sbjct: 1 MALKIYNTETRQKETFTPIQPNKVGLYVCGVTVYDYCHVGHARVMVVFDTVVRHLRSLGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN TD+DDKII+RA + E+ SL++R+ D L L P +P+ +++M+
Sbjct: 61 DVTYVRNITDIDDKIIQRALENKESIQSLTSRFIDAMHEDEKALNVLRPDMEPKATEYMD 120
Query: 137 QIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 195
+I+ MI+ +I D AY E GDV+F V+ +YGRLSG+ +E +G RV ++S K++P
Sbjct: 121 EIETMISTLIEKDFAYPAENGDVYFHVKADDDYGRLSGKNIEELDSGSRVEINSVKKDPL 180
Query: 196 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255
DF LWKA+K EP+W SPWG GRPGWHIECSAMS L + FDIHGGG+DL FPHHENEI
Sbjct: 181 DFVLWKASKENEPAWQSPWGDGRPGWHIECSAMSTKCLGNHFDIHGGGLDLSFPHHENEI 240
Query: 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315
AQS A + V+ WMH G V ++EKMSKSLGNFFTIR++ ++YHP +R+FL+++HYR
Sbjct: 241 AQSECATGEHYVNSWMHCGFVRIDDEKMSKSLGNFFTIREVLKQYHPEVIRYFLLASHYR 300
Query: 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHA 375
SP+NYS LD A +V +Y L+ L P + AE +KL EF A
Sbjct: 301 SPVNYSEENLDVAKASVGRLYSALE-----LVPADQ----------AEPAESKLEAEFMA 345
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
M+DD NT + F+ L K+ KQ+ L L+K+ N++
Sbjct: 346 AMNDDFNTPQAMAVLFE------------LAKEVNKQKSPGLAALLKKLANQI------- 386
Query: 436 GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKG 495
GLL A S Q D ++LT+E + LI ERA ARK KDFS+SD+IR +L +G
Sbjct: 387 GLLEQTAESFFKSQPSD-----SDLTDEMIEALIVERAEARKAKDFSRSDEIRDELLAQG 441
Query: 496 IALMDMGKETIWR 508
I L+D + T WR
Sbjct: 442 IELLDSAEGTSWR 454
>sp|Q747A2|SYC_GEOSL Cysteine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=cysS PE=3 SV=1
Length = 481
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/494 (45%), Positives = 304/494 (61%), Gaps = 17/494 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN+++ KE F + PG+V MYVCGVT YD H+GHARA V FD++YRYL H
Sbjct: 1 MALRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTYVRN+TDVDDKII RAN G +S R+ E+ DMA L PTYQP+ ++H+
Sbjct: 61 EVTYVRNYTDVDDKIINRANKEGVPFNVISERFIAEFDRDMAALGLDLPTYQPKATEHIA 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
++ +I +++ AY +GDV+F+VE Y +LS + LE +AG R+ V +KR+P D
Sbjct: 121 EMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEKKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEP WDSPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA YW+HNG V N EKMSKSLGNFFTI+++ E Y LR FL+SAHYRS
Sbjct: 241 QSEAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLESYDAEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
P+++S L A+ + IY L + A++ + RI+ + L F
Sbjct: 301 PIDFSDQNLKEAAAGLERIYNALAGIDEAVAA--DGTGAGRIDEELAEKAAGLPTRFREA 358
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L F D ++ +N L + +++ S R+ + V +LG
Sbjct: 359 MDDDFNTAQALGYVF-DLVRAVNRVL------AEGEIDRAVLASARE---AIDRVGAVLG 408
Query: 437 LLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRK 494
L PGA+ E L+ K AL + ++ +LIEER AARK +DF ++D+IR L +
Sbjct: 409 LFTSEPGAFVERLKSRKAAALP---IEAAEIERLIEERNAARKARDFRRADEIRDTLAAQ 465
Query: 495 GIALMDMGKETIWR 508
GI L+D + T W+
Sbjct: 466 GILLLDSAQGTTWK 479
>sp|Q0A7N3|SYC_ALHEH Cysteine--tRNA ligase OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=cysS PE=3 SV=2
Length = 462
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/494 (46%), Positives = 298/494 (60%), Gaps = 39/494 (7%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L I+NS+TQ+KE F PI PG V MYVCG+T YD HLGHARA V FD++ RYL HL V
Sbjct: 2 LHIHNSLTQRKERFEPIQPGHVRMYVCGMTVYDYCHLGHARALVVFDMVARYLRHLGYRV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+VRN TD+DDKIIRRA +LGE +++ R+ + D L LPP ++PR + H++ I
Sbjct: 62 TFVRNITDIDDKIIRRAAELGEPMGAVTERFIRAMHEDAEALGVLPPDHEPRATGHIDDI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +++ AYV + GDV+FAV P YG+LSG+R E+ RAG RV VD KR+P DF
Sbjct: 122 IAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSGERQEDLRAGARVEVDEGKRDPVDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWKAA+ GEP+W SPWG GRPGWHIECSAMS L FDIHGGG+DL FPHHENEIAQ
Sbjct: 182 ALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMHNGHV N+EKM+KSLGNFFT+R++ + A+R FL+S+HYRSP
Sbjct: 242 SECATGHPFVNYWMHNGHVRINDEKMAKSLGNFFTVREVLSEHRAEAVRLFLLSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS+ L A A+ +Y L+ A P E R FHA M
Sbjct: 302 LNYSLDGLRQAQGALERLYLALRGLPEA--------------PVPEADPQGFRARFHAAM 347
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT L F+ + +N L++ + LR + +LGL
Sbjct: 348 DDDFNTPEALAVLFE-----LAREVNRLRQGDDDAGAAAPGALLRVLGG-------VLGL 395
Query: 438 LPPGAYSEVLQQLKDKALKRAELT---EEDVLQLIEERAAARKNKDFSKSDQIRADLTRK 494
LQ ++ L+ + + ++ L+ R ARKN+DF+++D+IR +L +
Sbjct: 396 ---------LQDDPERFLRGGDAGGDEDAEIDALVARRTEARKNRDFAEADRIRDELAER 446
Query: 495 GIALMDMGKETIWR 508
GI L D + T WR
Sbjct: 447 GIILEDGPQGTTWR 460
>sp|B5EEK6|SYC_GEOBB Cysteine--tRNA ligase OS=Geobacter bemidjiensis (strain Bem / ATCC
BAA-1014 / DSM 16622) GN=cysS PE=3 SV=1
Length = 480
Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/500 (46%), Positives = 302/500 (60%), Gaps = 30/500 (6%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN++T KE F PI PGKVGMYVCGVT YD H+GHARA V FD++YR+L
Sbjct: 1 MPLRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRHLRSKGL 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTYVRN+TD+DDKII RAN G +S R+ +E+ DMA L PT+QP+ ++H+
Sbjct: 61 EVTYVRNYTDIDDKIINRANRDGVPYNEISERFIKEFDNDMARLMLQLPTFQPKATEHIP 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+I ++ +I+ AY DVF+ V++ Y +LS + LE+ +AG R+ VD RK +P D
Sbjct: 121 EIIALVQTLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVDERKEHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECSAMS +L DIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YW+HNG V N+EKMSKSLGNFFTI++I E Y LR FL+SAHYRS
Sbjct: 241 QSEAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEILESYDAEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDC------INKLR 370
P+++S L A + IY+ AL+ E + PA D +
Sbjct: 301 PIDFSDQNLKEAELGLERIYK-------ALAGIYERLASGANTPAGADNAEFVEKVAGFA 353
Query: 371 DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 430
F M DD NT+ L G D ++ IN L L+E + EV +
Sbjct: 354 GRFGDAMDDDFNTALAL-GHLFDLVRVINREL--------PTASTGLLEQAKA---EVAK 401
Query: 431 VLRILGLLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIR 488
+ +LG+ P A+ LQ++KD+ E++ E++ LI ERA ARK K+F + D+IR
Sbjct: 402 MAAVLGICDSVPAAF---LQRMKDRKTSDIEMSAEEIEALIAERAEARKAKNFKRGDEIR 458
Query: 489 ADLTRKGIALMDMGKETIWR 508
L K I L+D + T W+
Sbjct: 459 DLLLEKNIVLLDSAQGTTWK 478
>sp|Q60BG8|SYC_METCA Cysteine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=cysS PE=3 SV=1
Length = 465
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/493 (48%), Positives = 298/493 (60%), Gaps = 34/493 (6%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QKE F P+ P +V MYVCG+T YD HLGHAR V FD++ RYL HL +V
Sbjct: 2 LKIYNSLTRQKEEFRPLEPRRVRMYVCGMTVYDYCHLGHARVMVVFDMVARYLRHLGLKV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKIIRRA + GE +L+ R+ + D L LPP ++PR ++ ++ I
Sbjct: 62 TYVRNVTDIDDKIIRRAVENGETIGALTARFIEAMHEDERALGVLPPDHEPRATESIDDI 121
Query: 139 KDMITQIINNDCAYV-VEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +I AYV GDVF+AV PNYGRLSG+ L+ RAGER+ VD KR+P DF
Sbjct: 122 LAMIGTLIERGHAYVGSNGDVFYAVASFPNYGRLSGKNLDELRAGERIEVDEAKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK+AK GEP W SPWGPGRPGWHIECSAMS L + FDIHGGG+DL FPHHENEIAQ
Sbjct: 182 VLWKSAKPGEPFWASPWGPGRPGWHIECSAMSTRCLGAHFDIHGGGMDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A + V+YWMHNG V N EKMSKSLGNFFT+R+I RY P +R F++++HYRSP
Sbjct: 242 SEGATGEHFVNYWMHNGFVRINEEKMSKSLGNFFTVREILARYRPEVVRFFILNSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS LD A+ A+ +Y L+ L P P ED F M
Sbjct: 302 LNYSDENLDEAAAALSRLYTALRGLAPDL-PL----------PLGEDRDEGFSSRFADAM 350
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D + IN K + +L +L+ + N +LGL
Sbjct: 351 QDDFNTPEAIAVLF-DLAREINR-----HKAAEPAKAAALGATLKSLGN-------VLGL 397
Query: 438 L--PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKG 495
L P AY K A + L++ D+ I R ARK K++++SD+IR +L +G
Sbjct: 398 LQTDPEAY------FKSDA-GGSGLSDADIETRIRARLEARKAKNWAESDRIRDELKAQG 450
Query: 496 IALMDMGKETIWR 508
I L D T WR
Sbjct: 451 IILEDSAAGTTWR 463
>sp|A5D5M0|SYC_PELTS Cysteine--tRNA ligase OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=cysS PE=3 SV=1
Length = 484
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/490 (46%), Positives = 300/490 (61%), Gaps = 9/490 (1%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++IYN++T++KE F P PG+V MYVCG T Y+ HLG+AR V FD + RYL H EV
Sbjct: 1 MEIYNTLTRRKENFQPREPGRVCMYVCGPTTYNYIHLGNARPLVFFDTVRRYLIHKGYEV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+V+NFTDVDDKII RA + G++PL+L+ RY EY D L P VS+H+ I
Sbjct: 61 LFVQNFTDVDDKIINRAQEEGDDPLALARRYIGEYFKDADALNVRRADRHPLVSEHIPDI 120
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
M+ +++ AYVV+G+V+F V K YG+LSG+ LE+ +AG RV VD RKR+P DFA
Sbjct: 121 IKMVDELVKKGAAYVVDGNVYFEVRKFAGYGKLSGRTLEDMQAGARVEVDPRKRDPLDFA 180
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEP WDSPWGPGRPGWHIECSAMS YL + FDIHGGG DLIFPHHENEIAQS
Sbjct: 181 LWKAAKPGEPCWDSPWGPGRPGWHIECSAMSLKYLGTNFDIHGGGYDLIFPHHENEIAQS 240
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
AA V YWMHNG +T N EKMSKSLGNFF +R I ++ P +R FL+S HYRSPL
Sbjct: 241 EAATGQPFVRYWMHNGFITVNEEKMSKSLGNFFLVRDILAKFPPELVRFFLLSTHYRSPL 300
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
++ ++ +A + I +L+ AL G A + D +++R F A M
Sbjct: 301 DFDGEKMAAAGRGLERIKTSLRLLYEALERPVSEGVQA---VCSRDPFDEIRASFEAAMD 357
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438
DD NT+ + GA D + N+++ Q + L +L + NE EVL I +
Sbjct: 358 DDFNTA-LAIGAVFDLAREANTAVQRTGPAVSGQDRQILQYAL-DLFNEFNEVLGIFKV- 414
Query: 439 PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIAL 498
GA +L + A + L E + ++E R ARK KD+S +D+IR L GI L
Sbjct: 415 -DGASGRLL--IDGAAGDDSGLVEGLINLILEVRQEARKRKDWSTADRIRDGLKELGILL 471
Query: 499 MDMGKETIWR 508
D + W+
Sbjct: 472 EDTPQGVRWK 481
>sp|Q2SK40|SYC_HAHCH Cysteine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396)
GN=cysS PE=3 SV=1
Length = 467
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/491 (46%), Positives = 307/491 (62%), Gaps = 28/491 (5%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIY+S++QQKE F PI GKVG+YVCG+T YD HLGHAR V FD++ RYL +V
Sbjct: 2 LKIYSSLSQQKEEFKPIQAGKVGIYVCGMTVYDYCHLGHARVLVCFDIITRYLRAKGYDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TDVDDKI+ RA D GE+ +L+ R+ D L L PT +PR + H+++I
Sbjct: 62 NYVRNITDVDDKILNRARDNGESVDALTARFIDAMHEDERALGVLSPTSEPRATGHIDEI 121
Query: 139 KDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI ++++ AY GDV+++VE+ +YG+LS Q+L+ RAG R+ VD+ KR+PADF
Sbjct: 122 IAMIQRLMDKGYAYHASNGDVYYSVEQFADYGKLSKQKLDEIRAGARIEVDAEKRSPADF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GE SWDSPWG GRPGWHIECSAMS L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGELSWDSPWGEGRPGWHIECSAMSTRCLGDTFDIHGGGPDLKFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA V+YWMH G V N EKMSKSLGNFFTIR+I ++Y +R+FL S+HYRS
Sbjct: 242 SEAATGCKYVNYWMHAGAVRVNKEKMSKSLGNFFTIREILDKYPAEVVRYFLASSHYRSA 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
++YS + L+ A + +Y ++++ + E G + P + + R+ FH M
Sbjct: 302 IDYSDVALEEARSGLERLYNSIREL------YGELGAVSMDEP----LVGEYRERFHQAM 351
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NTS + F D K +N + KK+ + + LSL + + ++ +LGL
Sbjct: 352 DDDFNTSSAVAVLF-DMAKAVN-----VAKKEDRTRALSLAKGM-------VDLAEVLGL 398
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497
L A E L Q + + + L+ ++ I +R AAR NKDF++SD+IR L KG+
Sbjct: 399 LQ--ADPESLMQGEGEEV--GGLSVAEIEDFIAQRNAARANKDFAESDRIRDLLKEKGVL 454
Query: 498 LMDMGKETIWR 508
L D + T W+
Sbjct: 455 LNDSREGTSWQ 465
>sp|B5YID4|SYC_THEYD Cysteine--tRNA ligase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=cysS PE=3 SV=1
Length = 487
Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/494 (43%), Positives = 300/494 (60%), Gaps = 15/494 (3%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++++N++T + E F PI KVG+Y CGVT YDL H+GHAR+AV FD++ +YL + EV
Sbjct: 1 MRVFNTLTDKLEEFKPINDKKVGIYACGVTVYDLCHIGHARSAVVFDVIVKYLRYKGYEV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+V+NFTD+DDKII RAN G + ++ +Y EY DM L +P+ ++H+ ++
Sbjct: 61 KFVKNFTDIDDKIINRANKEGVSWKEIAEKYTGEYYKDMDRLGITRADIEPKATEHINEM 120
Query: 139 KDMITQIINNDCAYVVE----GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNP 194
++I +IN AY +E V+F+VEK P YG+LS ++++ +G RV VD RK++P
Sbjct: 121 IEIIQTLINKGYAYEIEEGQAKSVYFSVEKFPQYGKLSKKKIDELISGARVEVDERKKSP 180
Query: 195 ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE 254
DFALWKA+K GEP WDSPWG GRPGWHIECSAMS YL FDIHGGG DLIFPHHENE
Sbjct: 181 LDFALWKASKPGEPWWDSPWGKGRPGWHIECSAMSIKYLGETFDIHGGGADLIFPHHENE 240
Query: 255 IAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHY 314
IAQS A YW+HNG VT N EKMSKSLGN IR + + Y ALR FL+S+HY
Sbjct: 241 IAQSEAFTGKPFAKYWIHNGFVTINKEKMSKSLGNVLNIRDLLDIYDAEALRLFLLSSHY 300
Query: 315 RSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFH 374
RSP+ ++ + A V +Y T+ E + + K++ + + L+ EF
Sbjct: 301 RSPIEFAHEYIKEAEATVDRVYSTIMRIE-DFEKIEINDKSSIEFDKVKAMLENLKPEFE 359
Query: 375 ARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRI 434
M DD NT+ L F+ FI + KK + +++ + + ++ E+ VL +
Sbjct: 360 KAMDDDFNTAKALGILFE----FIKEINRFMDKKPSQNKEIDFLVTAKRAIKEIGSVLNL 415
Query: 435 LGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRK 494
P Y ++L+ +K+ + EE++ +LI+ER ARKNKD+ K+D IR L K
Sbjct: 416 FQRQPVDWYRDLLK------VKKIAIKEEEINRLIKERTEARKNKDWKKADSIREQLLSK 469
Query: 495 GIALMDMGKETIWR 508
GI L D TIW+
Sbjct: 470 GIILEDKPDRTIWK 483
>sp|Q1H417|SYC_METFK Cysteine--tRNA ligase OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=cysS PE=3 SV=1
Length = 455
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/494 (46%), Positives = 301/494 (60%), Gaps = 46/494 (9%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYN++ + K+ F+PI+PGKV MYVCG+T YD HLGHAR V FD++ R+L EV
Sbjct: 2 LKIYNTLARAKQTFSPIIPGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRSSGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKII RAN+ GE +L++R+ D A L P +PR +D++ ++
Sbjct: 62 TYVRNITDIDDKIIARANENGETINALTDRFIAAMNEDAARLGVWRPDLEPRATDYIHEM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +I AY + GDV++AV +YG+LSG+ LE+ RAGERV VD+ KR+P DF
Sbjct: 122 IAMIVALIEKHHAYAADNGDVYYAVSSFASYGKLSGKSLEDLRAGERVEVDAHKRDPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GEPSWDSPWGPGRPGWHIECSAM A +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPSWDSPWGPGRPGWHIECSAMGARHLGPHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A + V+YWMHNG + ++EKMSKSLGNFFTIR++ E+Y +R F++ AHYRSP
Sbjct: 242 SEGAHGCTFVNYWMHNGFIRVDDEKMSKSLGNFFTIREVLEKYDAEVVRFFILRAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS LD A A+ +Y TL+ E+ P AE F +
Sbjct: 302 LNYSSHHLDDAKQALTRLYNTLRGRELPQLDIDWR------QPEAE--------RFKQAL 347
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT F+ + S N + Q +L+++L LGL
Sbjct: 348 DDDFNTPEAFAVLFE-----LASEAN----RTGSAVQAALLKALAG----------QLGL 388
Query: 438 LPPGAYSEVLQQLKDKALKR---AELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRK 494
LQ+ D+ LK A L+ +++ +LI ER AARK K+F+++D+IR LT +
Sbjct: 389 ---------LQRDPDEFLKGEAVAGLSPDEIERLIAERLAARKCKNFAEADRIRDALTAQ 439
Query: 495 GIALMDMGKETIWR 508
GI L D + T WR
Sbjct: 440 GIILEDTPQGTSWR 453
>sp|Q72BQ5|SYC_DESVH Cysteine--tRNA ligase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=cysS PE=3
SV=1
Length = 485
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/490 (44%), Positives = 296/490 (60%), Gaps = 9/490 (1%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++IYNS++++KELFTP VPGKV MYVCG+TAYDL H+GHAR+AV FD+L RYL H +V
Sbjct: 1 MQIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+ RNFTDVDDKII+RAN+ G ++ +Y + DM L L +P+ + H+ ++
Sbjct: 61 TFARNFTDVDDKIIKRANEEGLTSQQVAEKYIDTFYEDMDRLNVLRADIEPKATGHILEM 120
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+ ++I AY GDV+F V P YG+LSG+ +++ R+G RVA K +P DF
Sbjct: 121 IALCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGEEKEDPLDF 180
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWKAAK GEPSW SPWG GRPGWHIECSAMS ++ DIHGGG DLIFPHHENEIAQ
Sbjct: 181 ALWKAAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFPHHENEIAQ 240
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
+ AA V YWMHNG V + EKMSKSLGNF TIR I E Y P LR FL++ HYRSP
Sbjct: 241 TEAALDKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILEGYLPEVLRFFLLTKHYRSP 300
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
++++ +D A ++ IY+ L S + + AE + L F +
Sbjct: 301 IDFTFDSMDEAEKSLKRIYEALSLARTERSRSKWSATPLPADVTAE--FDTLDRAFDEAL 358
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DDLNT+ L F ++ +N L K + + L+L+E L + + +VL + G
Sbjct: 359 EDDLNTAAALGHVFG-TIRLVNRLLED-KNLRKSAETLALLERLDGLVAKWMKVLGVFGR 416
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497
P L LK+ ++R + V L+EER + R KDF+++D IR +L GI
Sbjct: 417 EPEA----FLSDLKECRIRRKGIDTTKVDALLEERKSVRAAKDFARADAIRDELAALGIE 472
Query: 498 LMDMGKETIW 507
+ D +W
Sbjct: 473 VRDTPSGAVW 482
>sp|Q2Y7U5|SYC_NITMU Cysteine--tRNA ligase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=cysS PE=3 SV=1
Length = 464
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/496 (45%), Positives = 297/496 (59%), Gaps = 47/496 (9%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKI+NS+ ++K+ F P+ PGKV +YVCG+T YD HLGHAR V FD++ R+ + +V
Sbjct: 2 LKIHNSLAREKQEFIPLTPGKVKVYVCGMTVYDYCHLGHARVMVVFDMVQRWFRANRFDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKIIRRA + E+ +L+ R+ Q D A L PP+++PR + H+E +
Sbjct: 62 TYVRNITDIDDKIIRRAQENKESIEALTARFIQAMEEDAAALGVEPPSWEPRATRHVEDM 121
Query: 139 KDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +++ AY GDV++AV + P YG+LSG+ L+ RAGERV VD K +P DF
Sbjct: 122 IAMIQVLVDKKLAYPASNGDVYYAVHRFPGYGKLSGKSLDELRAGERVIVDPHKNDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GEP WDSPWGPGRPGWHIECSAM HYL FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPQWDSPWGPGRPGWHIECSAMGEHYLGEHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMHNG V N+EKMSKSLGNFFT+R+I + P +R F++ AHYRSP
Sbjct: 242 SEGAHGHPFVNYWMHNGFVRVNDEKMSKSLGNFFTVREILAHFQPEVVRFFILRAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNY+ +QL+ A A+ +Y L+ EV + D + F M
Sbjct: 302 LNYADMQLEDAGRALDRLYTALKGIEVH-------------DEVEIDWDDPYASRFREAM 348
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
+DD NT L F + + +N K + P+ ++L+++L +LGL
Sbjct: 349 NDDFNTPEALAVLFD-----LATEVN--KTRLPR--DIALMKALGG----------VLGL 389
Query: 438 LPPGAYSEVLQQLKDKALKRAE-----LTEEDVLQLIEERAAARKNKDFSKSDQIRADLT 492
LQQ K ++A+ E V QLI++R AR NKD+ ++D+IR +L
Sbjct: 390 ---------LQQDPWKYFQQADSEDPAFAPEKVEQLIQQRLVARANKDYREADRIRKELM 440
Query: 493 RKGIALMDMGKETIWR 508
I L D T WR
Sbjct: 441 EANIILEDGPHGTTWR 456
>sp|Q7NX82|SYC_CHRVO Cysteine--tRNA ligase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=cysS PE=3 SV=2
Length = 457
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/493 (45%), Positives = 294/493 (59%), Gaps = 42/493 (8%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L +YN++T+QKE F PI PGKV MYVCG+T YDL H+GHAR +FD++YR+L+ +V
Sbjct: 2 LSLYNTLTRQKEAFKPIEPGKVSMYVCGMTVYDLCHIGHARMLAAFDVIYRWLKASGYDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TD++DKII+RA + G P L + D A L LPPT++PR + H+ +
Sbjct: 62 NYVRNITDIEDKIIKRALERGITPEQLVEETIADMRQDAAALGLLPPTHEPRATHHVGGM 121
Query: 139 KDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI Q+I N AY GDV++AV + YG+LSG+ L+ RAGERV VD KR+P DF
Sbjct: 122 VAMIEQLIANGKAYPAANGDVYYAVREFEGYGKLSGRTLDKLRAGERVEVDPNKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GEPSWDSPWG GRPGWHIECS MS H+L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPSWDSPWGKGRPGWHIECSVMSCHHLGEHFDIHGGGEDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YW+HNG + + EKMSKSLGNFFTIR + + + +R F++ +HYRSP
Sbjct: 242 SEGAHGHQYVNYWLHNGFINVDGEKMSKSLGNFFTIRDVLQHFDGEVIRFFIVRSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE--HGKTARINPAAEDCINKLRDEFHA 375
+NY+ L+ A + +Y L+ E+ S + H AR F A
Sbjct: 302 VNYTDSILNDAKHGLTRLYTALRGIELPTSDGIDWNHAYAAR---------------FKA 346
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
M DD TS + F+ + +N K + P+ +L +K++ +L
Sbjct: 347 AMDDDFGTSEAVAVLFE-----LAGEVN--KSRDPQLARL------------LKDLGGVL 387
Query: 436 GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKG 495
GLL EV Q + EL+ E V LI+ R AR KD+++SD+IR +LT KG
Sbjct: 388 GLLTRD--PEVFLQ---GGVGEGELSAEQVEALIQARKDARAAKDWAESDRIRDELTAKG 442
Query: 496 IALMDMGKETIWR 508
I L D TIWR
Sbjct: 443 IVLEDGAGGTIWR 455
>sp|A1VDQ5|SYC_DESVV Cysteine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=cysS PE=3 SV=1
Length = 485
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/494 (44%), Positives = 297/494 (60%), Gaps = 17/494 (3%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++IYNS++++KELFTP VPGKV MYVCG+TAYDL H+GHAR+AV FD+L RYL H +V
Sbjct: 1 MQIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+ RNFTDVDDKII+RAN+ G ++ +Y + DM L L +P+ + H+ ++
Sbjct: 61 TFARNFTDVDDKIIKRANEEGLTSQQVAEKYIDTFYEDMDRLNVLRADIEPKATGHILEM 120
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+ ++I AY GDV+F V P YG+LSG+ +++ R+G RVA K +P DF
Sbjct: 121 IALCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGEEKEDPLDF 180
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWK+AK GEPSW SPWG GRPGWHIECSAMS ++ DIHGGG DLIFPHHENEIAQ
Sbjct: 181 ALWKSAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFPHHENEIAQ 240
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
+ AA V YWMHNG V + EKMSKSLGNF TIR I E Y P LR FL++ HYRSP
Sbjct: 241 TEAALDKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILEGYLPEVLRFFLLTKHYRSP 300
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA-RINPAAEDC---INKLRDEF 373
++++ +D A ++ IY+ L E G++ P D + L F
Sbjct: 301 IDFTFDSMDEAEKSLKRIYEALSLART------ERGRSKWSATPLPADVTAEFDTLDRAF 354
Query: 374 HARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLR 433
+ DDLNT+ L F ++ +N L K + + L+L+E L + + +VL
Sbjct: 355 DEALEDDLNTAAALGHVFG-TIRLVNRLLED-KNLRKSAETLALLERLDGLVAKWMKVLG 412
Query: 434 ILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTR 493
+ G P L LK+ ++R + V L+EER + R KDF+++D IR +L
Sbjct: 413 VFGREPEA----FLSDLKECRIRRKGIDTTKVDALLEERKSVRAAKDFARADAIRDELAA 468
Query: 494 KGIALMDMGKETIW 507
GI + D +W
Sbjct: 469 LGIEVRDTPSGAVW 482
>sp|A1WT89|SYC_HALHL Cysteine--tRNA ligase OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=cysS PE=3 SV=1
Length = 459
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/493 (45%), Positives = 295/493 (59%), Gaps = 41/493 (8%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKI+NS+T KE F PI PG+V +YVCG+T YD HLGHARA V FD + RYL L EV
Sbjct: 2 LKIHNSLTGAKEPFQPIEPGQVRIYVCGMTVYDFCHLGHARALVVFDAVVRYLRWLGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKIIRRA + GE +L++R+ + D + L PP ++PR ++ +E +
Sbjct: 62 TYVRNITDIDDKIIRRAAENGEPMTALTDRFIRAMHEDCSALGVEPPDHEPRATERLESM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+I ++I AYV + GDV+F+V P YG+LSG+R+E R+G R+ D K +P DF
Sbjct: 122 IALIEELIAGGHAYVGDNGDVYFSVASFPEYGKLSGRRVEELRSGSRIEPDEAKHDPVDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK+GEP+W SPWG GRPGWHIECSAMS L S FDIHGGG+DL FPHHENEIAQ
Sbjct: 182 VLWKAAKSGEPAWPSPWGDGRPGWHIECSAMSRDLLGSHFDIHGGGVDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMHNGHV ++EKM+KSLGNFFT+R + + +R FL+S+HYRSP
Sbjct: 242 SECASGHRFVNYWMHNGHVRIDDEKMAKSLGNFFTVRDVLAEHPAEVVRLFLLSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNY+ LD A + +Y L+ PAA ++ R+ F M
Sbjct: 302 LNYTGDALDEARGGLERLYNALRGL-----------------PAAAPARSQARERFREAM 344
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT L F A +N L++ S LR++
Sbjct: 345 DDDFNTREALAVLFDGA-----REINRLREAGDASGAASAAAELREL------------- 386
Query: 438 LPPGAYSEVLQQLKDKALKR--AELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKG 495
GA +LQQ + L+ A+ E++ L+ +R AARK KDF+++D+IR +L +G
Sbjct: 387 ---GAVLGLLQQDPEAYLRGDVADAEAEEIESLVAQRTAARKAKDFAEADRIRDELQARG 443
Query: 496 IALMDMGKETIWR 508
I L D + T WR
Sbjct: 444 IELEDTPEGTKWR 456
>sp|A4J0Y9|SYC_DESRM Cysteine--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1)
GN=cysS PE=3 SV=1
Length = 486
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/490 (45%), Positives = 298/490 (60%), Gaps = 7/490 (1%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++IYN++ + KE F P G V MYVCG T Y+ HLG+AR V FD + RY + +V
Sbjct: 1 MQIYNTLARAKEEFIPRDKGHVSMYVCGPTTYNFIHLGNARPLVFFDTVRRYFLYKGYKV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YV+NFTDVDDKII RA + +PL L+ +Y QE+ VD L + P+VS+H+E+I
Sbjct: 61 DYVQNFTDVDDKIINRAAEEKIDPLELAQKYIQEFFVDADALNVMRADTHPKVSEHIEEI 120
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
D+I ++ + AYVV+GDV+FAV YG+LSG+ LE+ +AG RV VD RK++P DFA
Sbjct: 121 IDLIKRLEDQGHAYVVDGDVYFAVRSFAEYGKLSGRSLEDMQAGARVEVDPRKKDPMDFA 180
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEPSWDSPWG GRPGWHIECSAM+ YL + FDIHGGG DLIFPHHENEIAQS
Sbjct: 181 LWKAAKPGEPSWDSPWGSGRPGWHIECSAMAEKYLGNGFDIHGGGFDLIFPHHENEIAQS 240
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
AAC+ YWMHNG +T N EKMSKSLGNFF +R+I ++ P +R +L+S HYRSPL
Sbjct: 241 EAACKAPFARYWMHNGFITINQEKMSKSLGNFFLVREILAKFPPDVVRWYLLSTHYRSPL 300
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
++ +L + + I L+ A+ G+ + E+ + ++R EF M
Sbjct: 301 DFDDEKLVMSGKGLERIKTALRLLYEAMDLPVYEGEDIQGAENFEETLQRIRLEFEKAMD 360
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438
DD NT+ + F D K +N + L K L + + L + +K+ R+LG+L
Sbjct: 361 DDFNTA-LAISYFFDLAKEVNIYVGKLNSK----VTLEMRKILDQAHTLIKDFNRVLGIL 415
Query: 439 PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIAL 498
+ L L + A LTE V +I+ R AR KD+S +D IR L G+ L
Sbjct: 416 KEDKMTGKL--LIEMAGADDTLTEGLVQLIIKIRQEARSKKDWSTADAIRDGLKELGVVL 473
Query: 499 MDMGKETIWR 508
D + W+
Sbjct: 474 EDTPQGVRWK 483
>sp|C5A739|SYC_THEGJ Cysteine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=cysS PE=3 SV=1
Length = 476
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/492 (44%), Positives = 298/492 (60%), Gaps = 20/492 (4%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ ++IYN++T+QKE F P+ G+V MYVCG T YD HLGHAR ++FD++ RYLEH
Sbjct: 1 MAIRIYNTLTRQKEEFKPLHEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V V NFTD+DDKII+RAN+ GE+P L+ ++ + +L DM L+ P PRV++HM+
Sbjct: 61 TVLMVMNFTDIDDKIIKRANETGEDPKELAEKFLRIFLEDMKALKVKPADIYPRVTEHMQ 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I I ++ AY V+F V K +YG+LS +LE+ G RV KRNP D
Sbjct: 121 DIISFIKKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKIKLEDLVKGARVEPGEGKRNPED 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKKAKPGEPKWESPWGEGRPGWHIECSTMSSKYLGESFDIHGGGNDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YWMH G + N EKMSKSLGNF T+R++ +RY+P +R F++ HYRS
Sbjct: 241 QSEACFGHEWVHYWMHTGFLMVNGEKMSKSLGNFVTVRELLKRYNPEVIRLFVLQRHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+YS ++ A + + +Y TL++ VA+S + + A + I R +F+
Sbjct: 301 PLDYSEEGIEHAKNNLERLYNTLENIRVAMSKAEISFRWDEPEFRAYEAIRDARKKFYEA 360
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L F+ + IN L ++K PK+ LRK K+V + G
Sbjct: 361 MDDDFNTAEALKAVFEVS-NAINRYLTEVEK--PKES------ILRKAWEFFKDVGEVFG 411
Query: 437 LLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGI 496
L + + ++ ++AE EE + L+E RA RK K F +D+IR +L + GI
Sbjct: 412 L-----FEDYFKE------QKAENDEELINLLVEVRAQLRKEKKFDLADKIREELRKLGI 460
Query: 497 ALMDMGKETIWR 508
L D + T+W+
Sbjct: 461 QLEDTPQGTVWK 472
>sp|Q0HTK4|SYC_SHESR Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=cysS PE=3
SV=1
Length = 461
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/494 (45%), Positives = 293/494 (59%), Gaps = 42/494 (8%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI PGKVGMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TD+DDKII+RAN+ E+ +L++R E D L + P ++PR + H+ +I
Sbjct: 64 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHIAEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ +++ AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF
Sbjct: 124 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y P +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDPETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
+NYS L A A+ +Y ++D ++ ++P AE+ + K F A M
Sbjct: 304 INYSEENLKQARAALERLYTAIKDVDLTVAP-----------APAEEFVAK----FKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F + +N LK Q + +K++ +LGL
Sbjct: 349 DDDFNTPEAYSVLFD-----MVREINRLKTTDMAQASAMAV--------AMKQLADVLGL 395
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQ---LIEERAAARKNKDFSKSDQIRADLTRK 494
L Q D A + E ++++V + LI ER AR KD+ +D R L
Sbjct: 396 ---------LHQAPD-AFFKGEGSDDEVAEIEALIVERNRARAEKDWPAADVARNRLNEL 445
Query: 495 GIALMDMGKETIWR 508
G+ L D T WR
Sbjct: 446 GVVLEDGPSGTTWR 459
>sp|Q5QYP3|SYC_IDILO Cysteine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735
/ DSM 15497 / L2-TR) GN=cysS PE=3 SV=1
Length = 459
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/493 (44%), Positives = 300/493 (60%), Gaps = 37/493 (7%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L ++N++T++K+LF PI PG VG+YVCGVT YD H+GHAR V+FD++ RYL L
Sbjct: 1 MALTVFNTLTRKKQLFEPIQPGHVGIYVCGVTTYDYCHIGHARTYVAFDIVVRYLRKLGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V YVRN TD+DDKII+RA + GE+ ++ R+ +E D L + P +PRV+ HM+
Sbjct: 61 SVKYVRNITDLDDKIIKRAAENGEDFHQVTERFIREMHKDFDALNLVRPDIEPRVTSHMD 120
Query: 137 QIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 195
+I MI ++I N AY GDV F V +YG+LS Q LE +AG RV VD+ K++P
Sbjct: 121 EIILMIERLIENGNAYEAGNGDVLFDVSTFNDYGKLSRQDLEQLQAGSRVDVDAAKQDPL 180
Query: 196 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255
DF LWK+AK GEPSW SPWG GRPGWHIECSAM+ +L S FDIHGGG DL FPHHENEI
Sbjct: 181 DFVLWKSAKPGEPSWSSPWGEGRPGWHIECSAMNKKHLGSTFDIHGGGSDLSFPHHENEI 240
Query: 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315
AQSC A Q V YWMH+G V +NEKMSKSLGNFFTIR + E+Y +R+FL+S+HYR
Sbjct: 241 AQSCCANQSEYVKYWMHSGMVQVDNEKMSKSLGNFFTIRSVLEQYDAETVRYFLLSSHYR 300
Query: 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHA 375
S LNY+ LD A A+ +Y L+D ++P A+E+ +K F
Sbjct: 301 SQLNYTQENLDQAHSALERLYTALRD----ITP----------QTASEELRSKYWQSFQQ 346
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
M DDLN ++ F+ I +N ++ P ++ ++ + + E+ ++
Sbjct: 347 AMDDDLNAPEAMSVLFE-----IAREINRNRESAP--------DTAAQLAHVLLELAEVM 393
Query: 436 GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKG 495
GLL E LQ D K + LI +R AR++KD++ +D+ R +LT G
Sbjct: 394 GLLQQSP-EEFLQGDDDDVAK--------IEALIAKRNQAREDKDWAAADEARDELTNMG 444
Query: 496 IALMDMGKETIWR 508
I L D + T WR
Sbjct: 445 IVLEDGAEGTRWR 457
>sp|O58370|SYC_PYRHO Cysteine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=cysS
PE=3 SV=1
Length = 476
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/494 (43%), Positives = 297/494 (60%), Gaps = 24/494 (4%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+TL+IYN++T+QKE F PI G+V MYVCG T YD HLGHAR ++FD++ RYLEH
Sbjct: 1 MTLRIYNTLTKQKEEFKPINEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V V NFTD+DDKIIRRA + GE+P L+ ++ + +L DM L+ P PRV++H+E
Sbjct: 61 SVLMVMNFTDIDDKIIRRAKETGEDPAKLAEKFIKVFLEDMKALKVKPADIYPRVTEHIE 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I I ++ AY V+F V+K YG+LSG +LE R G RV K+NP D
Sbjct: 121 DIIQFIERLKEKGYAYEGSDGVYFEVQKFKEYGKLSGVKLEELRKGARVEPGEGKKNPED 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKKAKPGEPKWESPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+H G V EKMSKSLGNF T+R++ +RY P +R F++ HYRS
Sbjct: 241 QSEACFGHEWVHYWLHTGFVMVKGEKMSKSLGNFVTVRELLQRYSPEVIRFFVLQKHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+YS L A + + +Y TL++ +A+ + + A + I + R +F+
Sbjct: 301 PLDYSEEGLQHAKNNLERLYNTLENIRIAMENAELAYTWDENDFKAYNSIKEARRKFYEA 360
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLN--MLKKKQPKQQQLSLIESLRKIENEVKEVLRI 434
M DD NT+ L F+ +++++N + + ++PK+ LRK + V I
Sbjct: 361 MDDDFNTAEALKAVFE-----VSNAINKYITEAEKPKES------VLRKAWEFFRTVGEI 409
Query: 435 LGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRK 494
G+ + ++A+ E+ + LI+ RA RK + F +D+IR +L +
Sbjct: 410 FGIF-----------EEYFKEEKAKEEEKLIELLIQVRAELRKERKFELADKIREELRKL 458
Query: 495 GIALMDMGKETIWR 508
GI L D GKETIW+
Sbjct: 459 GIQLEDKGKETIWK 472
>sp|Q0HH98|SYC_SHESM Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=cysS PE=3
SV=1
Length = 461
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/494 (45%), Positives = 293/494 (59%), Gaps = 42/494 (8%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI PGKVGMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TD+DDKII+RAN+ E+ +L++R E D L + P ++PR + H+ +I
Sbjct: 64 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHITEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ +++ AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF
Sbjct: 124 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y P +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDPETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
+NYS L A A+ +Y ++D ++ ++P AE+ + K F A M
Sbjct: 304 INYSEENLKQARAALERLYTAIKDVDLTVAP-----------APAEEFVAK----FKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F + +N LK Q + +K++ +LGL
Sbjct: 349 DDDFNTPEAYSVLFD-----MVREINRLKTTDMAQASAMAV--------AMKQLADVLGL 395
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQ---LIEERAAARKNKDFSKSDQIRADLTRK 494
L Q D A + E ++++V + LI ER AR KD+ +D R L
Sbjct: 396 ---------LHQAPD-AFFKGEGSDDEVAEIEALIVERNRARVEKDWPAADVARNRLNEL 445
Query: 495 GIALMDMGKETIWR 508
G+ L D T WR
Sbjct: 446 GVVLEDGPSGTTWR 459
>sp|Q82Y45|SYC_NITEU Cysteine--tRNA ligase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=cysS PE=3 SV=1
Length = 465
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/498 (44%), Positives = 299/498 (60%), Gaps = 44/498 (8%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIY+++T+ + F P+ PG+V MYVCG+T YD HLGHAR V FD + R+L+ L +V
Sbjct: 2 LKIYDTLTRSRREFIPLTPGEVRMYVCGMTVYDYCHLGHARVLVVFDSVVRWLQTLGYKV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TDVDDKIIRRA + E +L+ RY Q D L + P+++PR +++++ +
Sbjct: 62 IYVRNITDVDDKIIRRALENHEPFSALTARYIQAMEEDAMALGVISPSFEPRATEYVDSM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI ++N + AYV GDVF+ V + P YG+LSG+ L++ RAGERV +D+ KR+P DF
Sbjct: 122 IAMIESLLNRELAYVASNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDTNKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK EPSWDSPWG GRPGWHIECSAMS HYL +FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSEHYLGDQFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S S+V+YWMHNG V +NEKMSKSLGNFFT+R++ RY P +R F++ AHYRSP
Sbjct: 242 SEGVHGHSHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLTRYQPEVVRFFIVRAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTL------QDCEVALSPFQEHGKTARINPAAEDCINKLRD 371
LNYS L+ A A+ +Y L QD EVA TA I+ E+ + R
Sbjct: 302 LNYSDAHLNDARSALERLYTVLKNHAPSQDSEVA---------TAVID--WENNVYARR- 349
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
F + M+DD NT + F A E+ R ++ +
Sbjct: 350 -FMSAMNDDFNTPEAVAVLFDLA-----------------------SEANRTGDSHYASL 385
Query: 432 LRIL-GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRAD 490
L+ L G+L L+ + + E++ +I++R ARK ++F+++D +R
Sbjct: 386 LKALGGVLGLLQQPPQQYLQYPAHLQDGQYSVEEIENMIQQRLQARKERNFAQADTLRQQ 445
Query: 491 LTRKGIALMDMGKETIWR 508
L GI L D + T WR
Sbjct: 446 LAEAGIILEDSPQGTTWR 463
>sp|Q8U227|SYC_PYRFU Cysteine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=cysS PE=3 SV=2
Length = 477
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/493 (43%), Positives = 288/493 (58%), Gaps = 18/493 (3%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YN++T+QKE F P+ G+V MYVCG T YD HLGHAR ++FD++ RYLEH V
Sbjct: 2 LKVYNTLTKQKEEFKPLREGEVKMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGYTV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
V NFTD+DDKII+RA + GE+P L+ R+ + +L DM L+ P PRV+DH++ I
Sbjct: 62 LMVMNFTDIDDKIIKRARETGEDPKELAERFIKIFLEDMEALKVKPADIYPRVTDHIDDI 121
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
+ I ++ AY ++F V+K P YG+LSG ++E+ + G RV K+NP DFA
Sbjct: 122 IEFIGKLKEKGYAYEGSDGIYFEVKKFPEYGKLSGVKIEDLQKGARVEPGEGKKNPEDFA 181
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWK AK GEP WDSPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIAQS
Sbjct: 182 LWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIAQS 241
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
A V YW+H G V EKMSKSLGNF TIR++ +RY P +R F++ HYRSPL
Sbjct: 242 EACFGHEWVKYWLHTGFVMVKGEKMSKSLGNFVTIRELLKRYEPEVIRFFVLQKHYRSPL 301
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
Y+ L A + + +Y TL++ VAL + + + I + + +F+ M
Sbjct: 302 EYTEEGLQHAKNNLQRLYNTLENIRVALRNAEISYTWGELEFKTYEIIREGKRKFYEAMD 361
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438
DD NT+ L F+ A IN L K PK+ L KI +EV
Sbjct: 362 DDFNTAEALKAVFEVA-NAINKYLTEANK--PKESILRKALEFFKIVSEV---------- 408
Query: 439 PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIAL 498
G + + ++ + + +L E L+E R RK K + +D IR +L + GI L
Sbjct: 409 -FGVFEDYFREETKEREESEKLIE----LLVEVRKQLRKEKRYELADMIREELKKLGIQL 463
Query: 499 MDMGKETIWRPCV 511
D G ET W+ +
Sbjct: 464 EDRGSETTWKRII 476
>sp|B0TC35|SYC_HELMI Cysteine--tRNA ligase OS=Heliobacterium modesticaldum (strain ATCC
51547 / Ice1) GN=cysS PE=3 SV=1
Length = 481
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/499 (43%), Positives = 307/499 (61%), Gaps = 27/499 (5%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
++L++YN+++++KE F P G+VGMYVCG T YD HLG+AR V FD + RYLEH+
Sbjct: 1 MSLRVYNTLSREKETFVPHKAGRVGMYVCGPTTYDYIHLGNARPLVVFDTIRRYLEHVGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EV Y++NFTD+DDKII RA ++GE+P++++ R+ +EY D L P T P+VS HM
Sbjct: 61 EVVYIQNFTDIDDKIIHRAKEIGEDPIAMAARFVEEYYRDAKALNVRPATIHPKVSAHMA 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+I MI ++ AY + GDV+F++ +YG+LSG+ LE+ +AG RV V+ RKR+P D
Sbjct: 121 EIIAMIGVLVEKGHAYELGGDVYFSIPSFKDYGKLSGRSLEDLQAGARVDVNERKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEPSWDSPWG GRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKGAKPGEPSWDSPWGKGRPGWHIECSAMSRKYLGDAFDIHGGGQDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVS-YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315
QS A S ++ YW+HNG +T N EKMSKSLGNFFT+R+I +R+ +R +L+S HYR
Sbjct: 241 QSEACTGTSPMARYWLHNGFITVNQEKMSKSLGNFFTLREILKRFPGDVIRFYLLSTHYR 300
Query: 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA-----EDCINKLR 370
SP+++ +L++A + + + + E AL+ GK PA E+ +
Sbjct: 301 SPIDFDDSKLEAAQKGLQRLRTSRRLIEEALAA---SGKEGAERPAGQREKLEEQWLAAK 357
Query: 371 DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 430
F M DD NT+ L+ F D + N+ L+ P+ +QL L ++ +E
Sbjct: 358 KGFREAMDDDFNTALALSMLF-DLAREANTFLHGGFALTPEDRQLLL-----QVAETFEE 411
Query: 431 VLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQ-LIEERAAARKNKDFSKSDQIRA 489
+ +LG+ L A + T + ++ LI RA ARK KD++ +D+IR
Sbjct: 412 LAGVLGI-----------DLAGGAAAADDNTVDGLMNLLIGIRAEARKKKDWATADRIRD 460
Query: 490 DLTRKGIALMDMGKETIWR 508
L GI + D + W+
Sbjct: 461 GLKELGIVIEDTPQGARWK 479
>sp|A1S4X2|SYC_SHEAM Cysteine--tRNA ligase OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=cysS PE=3 SV=1
Length = 459
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/491 (46%), Positives = 290/491 (59%), Gaps = 36/491 (7%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+++QKE F PI PGK+GMYVCGVT YDL H+GH R V FD++ RYL + EV
Sbjct: 2 LKIYNSISRQKEEFKPIQPGKIGMYVCGVTIYDLCHIGHGRTFVCFDMIVRYLRYRGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
Y RN TDVDDKII+RAN+ GE+ SL+ R E D L + P+++PR + H+++I
Sbjct: 62 NYQRNITDVDDKIIKRANENGESCDSLTERLIGEMHADFDALNMVRPSFEPRATLHIDEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+T++++ AYV +GDV F V YGRLSGQ LE +AG RV VD KRNP DF
Sbjct: 122 IDMVTRLLDRGHAYVAADGDVLFDVSSYAAYGRLSGQDLEQLQAGARVEVDENKRNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+WDSPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+ WMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNTWMHTGMVMVDREKMSKSLGNFFTIRDVLAHYDAQTVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A ++ +Y L+ ++ + A++ +++ F A M
Sbjct: 302 LNYSEDNLKQARASLERMYTALKGLDLTVEA-----------AGADEFVSR----FMAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN + K ++ L E+ EVL IL
Sbjct: 347 DDDFNTPEAYSVLF-DMVREIN---------RLKTSDMAAASQLGVALKELAEVLGILSS 396
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497
P E Q + A + AE+ LI ER AR KD+ +D R L G+
Sbjct: 397 TP-----EAFLQGEGNADEVAEIE-----ALIVERNRARAEKDWPAADVARDRLNALGVV 446
Query: 498 LMDMGKETIWR 508
L D + T WR
Sbjct: 447 LEDGPEGTTWR 457
>sp|Q0AJJ4|SYC_NITEC Cysteine--tRNA ligase OS=Nitrosomonas eutropha (strain C91) GN=cysS
PE=3 SV=1
Length = 467
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/493 (45%), Positives = 301/493 (61%), Gaps = 32/493 (6%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIY+++T+ + F P+ PGKV MYVCG+T YD HLGHAR V FD + R+L+ L EV
Sbjct: 2 LKIYDTLTRSRREFIPLTPGKVKMYVCGMTVYDHCHLGHARVLVVFDSVVRWLQTLDYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKIIRRA + E +L+ RY Q D A L + P+++PR ++ +E +
Sbjct: 62 TYVRNITDIDDKIIRRALENHEPFGALTARYIQAMEEDAAALGIISPSFEPRATECIESM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +++ AYV GDVF+ V + P YG+LSG+ L++ RAGERV +D+ KR+P DF
Sbjct: 122 VTMIESLLSKGLAYVANNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDTNKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK EPSWDSPWG GRPGWHIECSAMS HYL +FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSGHYLGERFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S +V+YWMHNG V +NEKMSKSLGNFFT+R++ RY P +R F++ AHYRSP
Sbjct: 242 SEGVHGHPHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLARYQPEVVRFFIVRAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINK-LRDEFHAR 376
LNYS L+ A +A+ +Y L++ + + + A A D +N F A
Sbjct: 302 LNYSDAHLNDARNALERLYTALKNHAPSQA------QAAEEATATIDWVNDGYAQRFMAA 355
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M+DD NT + F A + + SL+++L ILG
Sbjct: 356 MNDDFNTPEAVAVLFDLASE---------ANRTGNSHYASLLKALGG----------ILG 396
Query: 437 LLPPGAYSEVLQQLKDKALKRAE-LTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKG 495
LL Q L+ A + + + E++ ++I++R ARK K+F+++D +R L G
Sbjct: 397 LLQ----QSPRQYLQHPAHPQNDHHSIEEIERMIQQRLQARKEKNFAQADALRQQLAEAG 452
Query: 496 IALMDMGKETIWR 508
I L D + T WR
Sbjct: 453 IILEDGPQGTTWR 465
>sp|A0L4P8|SYC_MAGSM Cysteine--tRNA ligase OS=Magnetococcus sp. (strain MC-1) GN=cysS
PE=3 SV=1
Length = 490
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/500 (43%), Positives = 299/500 (59%), Gaps = 29/500 (5%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ + IYN++ ++KE F P++PGKVGMYVCGVT YD SH+GHAR V FD++ R+L
Sbjct: 8 VGITIYNTLGRKKEPFVPMIPGKVGMYVCGVTVYDYSHIGHARVMVVFDVIARHLRVTGF 67
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
++TYVRNFTD+DDKII+RAN+ GE+ +L+ RY + DMA L P +P+ ++H+
Sbjct: 68 DLTYVRNFTDIDDKIIKRANERGESIQTLTQRYIDAFHQDMAALGVQPADIEPKATEHLP 127
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
++ MI +++ AY GDV++AVE+ NYG+LSG+ L+ AG RV VDS K+NP D
Sbjct: 128 EMMQMIGTLMDKGVAYASGGDVYYAVERFANYGQLSGKVLDEQEAGARVEVDSNKQNPMD 187
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
F LWK AK EP WDSPWG GRPGWHIECSAM YL + FDIHGGG DLIFPHHENEIA
Sbjct: 188 FVLWKGAKPEEPQWDSPWGAGRPGWHIECSAMGTKYLGASFDIHGGGRDLIFPHHENEIA 247
Query: 257 QSCAACQDSNVSYWMHNGHVTNNN-----EKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
Q+ V+YW+HNG V N EKMSKSLGNF TIR + Y LR F+++
Sbjct: 248 QTEGCTGQHAVNYWIHNGFVNVVNEEGESEKMSKSLGNFHTIRDLLALYPGEVLRFFILN 307
Query: 312 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS--PFQEHGKTARINPAAEDCINKL 369
+HYRSPL++S L++A + IY L+ + L P G+ A + A L
Sbjct: 308 SHYRSPLDFSFSLLEAAKAGLDRIYTALRSAQALLGKLPGTPIGEPADVPAGAP---QDL 364
Query: 370 RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429
+ + M DD NT A+ F+ + ML +Q+ ++I + ++ +
Sbjct: 365 VENYLKAMDDDFNTPQ--------AIAFLFEAAKMLNTAISEQKDPAVIATWARLIRGLG 416
Query: 430 EVLRILGLLPPGAYSEVLQQLKDKALKRAE--LTEEDVLQLIEERAAARKNKDFSKSDQI 487
L + G P +L ++ AE L E + LI ER+AAR K++++SD+I
Sbjct: 417 HHLGLAGQDP---------ELWFRSGIGAEQGLQAEAIEALIAERSAARAAKNWAESDRI 467
Query: 488 RADLTRKGIALMDMGKETIW 507
R L ++GI L D T W
Sbjct: 468 RDTLAQQGIVLEDGQHGTQW 487
>sp|A0KYM2|SYC_SHESA Cysteine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=cysS PE=3
SV=1
Length = 461
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/494 (44%), Positives = 291/494 (58%), Gaps = 42/494 (8%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI PGKVGMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TD+DDKII+RAN+ E+ +L++R E D L + P ++PR + H+ +I
Sbjct: 64 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHIAEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ +++ AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF
Sbjct: 124 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
+NYS L A A+ +Y ++D ++ ++ AE+ + K F A M
Sbjct: 304 INYSEENLKQARAALERLYTAIKDVDLTVTA-----------APAEEFVAK----FKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F + +N LK Q + +K++ +LGL
Sbjct: 349 DDDFNTPEAYSVLFD-----MVREINRLKTTDMAQASAMAV--------AMKQLADVLGL 395
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQ---LIEERAAARKNKDFSKSDQIRADLTRK 494
L Q D A + E ++++V + LI ER AR KD+ +D R L
Sbjct: 396 ---------LHQAPD-AFFKGEGSDDEVAEIEALIVERNRARAEKDWPAADVARNRLNEL 445
Query: 495 GIALMDMGKETIWR 508
G+ L D T WR
Sbjct: 446 GVVLEDGPSGTTWR 459
>sp|Q9UYV2|SYC_PYRAB Cysteine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=cysS PE=3 SV=1
Length = 477
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/495 (42%), Positives = 300/495 (60%), Gaps = 26/495 (5%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ +K+YN++T++KE P+ G+V MYVCG T YD HLGHAR ++FD++ RYLEH
Sbjct: 1 MGIKVYNTLTRKKEELKPLRDGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHRGF 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V V NFTD+DDKII+RA + GE+P L+ R+ + +L DM L+ P PRV++H++
Sbjct: 61 TVLMVMNFTDIDDKIIKRAQETGEDPGKLAERFIKVFLEDMNALKVKPADIYPRVTEHID 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I + I ++ AY V+F V+K +YG+LSG ++E R G RV K+NP D
Sbjct: 121 DIIEFIKKLKEKGYAYEGSDGVYFEVQKFKDYGKLSGVKIEELRKGARVEPGEGKKNPED 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP WDSPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+H G V EKMSKSLGNF T+R++ +RY P +R F++ HYRS
Sbjct: 241 QSEACFGHEWVRYWLHTGFVMVKGEKMSKSLGNFVTVRELLQRYSPEVIRLFVLQKHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+Y+ L A + + +Y TL++ +A+ + K + + A + I + R +F+
Sbjct: 301 PLDYTEEGLQHAKNNLERLYNTLENIRIAMRNAELSYKWSEKDFEAYEAIREARKKFYDA 360
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLN--MLKKKQPKQQQLSLIESLRKIENEVKEVLRI 434
M DD NT+ L F+ +++++N +L+ +PK+ L + E ++
Sbjct: 361 MDDDFNTAEALKAVFE-----VSNAINKYILEVDKPKESIL----------RKALEFFKV 405
Query: 435 LGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQ-LIEERAAARKNKDFSKSDQIRADLTR 493
+ SEV +D + + EE +++ L+E R RK K F +D+IR +L +
Sbjct: 406 V--------SEVFGIFEDYFKEEKKGEEEKLIELLVEVRKQLRKEKRFDLADKIREELRK 457
Query: 494 KGIALMDMGKETIWR 508
GI L D G+ET+W+
Sbjct: 458 LGIQLEDKGQETVWK 472
>sp|B8DKL0|SYC_DESVM Cysteine--tRNA ligase OS=Desulfovibrio vulgaris (strain Miyazaki F
/ DSM 19637) GN=cysS PE=3 SV=1
Length = 485
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/493 (43%), Positives = 292/493 (59%), Gaps = 15/493 (3%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
+++YN++T++KE F P VPGKV MYVCG+TAYDL H+GHAR+AV FD+L RYL H +V
Sbjct: 1 MQLYNTLTRKKEHFEPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+ RNFTDVDDKII RAN G ++ +Y + DM L L +PR + H+E++
Sbjct: 61 TFARNFTDVDDKIITRANQEGLTSQEVAEKYIATFYEDMDRLNVLRADLEPRATTHIEEM 120
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+ ++I D AY GDV+F V P YG+LSG+ +++ R+G RVA K +P DF
Sbjct: 121 ISLCVRLIEQDKAYATPSGDVYFRVRAFPGYGKLSGRDVDDLRSGARVAPGEEKEDPLDF 180
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWKAAK GEP W+SPWG GRPGWHIECSAMS +L DIHGGG DL+FPHHENEIAQ
Sbjct: 181 ALWKAAKPGEPFWESPWGNGRPGWHIECSAMSEKHLPLPLDIHGGGQDLVFPHHENEIAQ 240
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
+ AA V YW+HNG V N EKMSKSLGNF TIR I E Y P LR+FL++ HYRSP
Sbjct: 241 TEAALGKDFVRYWVHNGFVQVNAEKMSKSLGNFRTIRDILENYLPETLRYFLLTKHYRSP 300
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
++++ +D A + IY+ L L +E + + + LR F M
Sbjct: 301 IDFTFESMDEAEKNLKRIYEALGLLHAELE--REKWTSGPLPKDVTEEFEGLRQAFADAM 358
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD+NT+ L F ++ N L+ K Q K + R + +E +LG+
Sbjct: 359 EDDMNTAAALGHVFT-MVRLANRILD--NKGQRKTEGARAF--FRAVLDEAATWFAVLGV 413
Query: 438 L---PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRK 494
P G L +L+ + R + V +L++ R AR +KDF+++D IR ++
Sbjct: 414 FGREPAG----FLAELRACRVARKGIDPAKVEELLQARINARADKDFARADAIRDEIAAL 469
Query: 495 GIALMDMGKETIW 507
GI + D +W
Sbjct: 470 GIEVRDTPSGAVW 482
>sp|A4Y5H9|SYC_SHEPC Cysteine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=cysS PE=3 SV=1
Length = 461
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/494 (45%), Positives = 293/494 (59%), Gaps = 42/494 (8%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R VSFD++ RYL ++ EV
Sbjct: 4 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 64 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHRDFDALNMLRPDFEPRATLHIAEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 124 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDENKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ T PA E + +F A M
Sbjct: 304 LNYSEDNLKQARSALERLYTAIKDVDL----------TVAAAPAEEFIV-----KFKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN + K ++ +L ++ +VL +LG
Sbjct: 349 DDDFNTPEAYSVLF-DMVRDIN---------RLKATDIAKASALAVAMKQLADVLGLLGQ 398
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQ---LIEERAAARKNKDFSKSDQIRADLTRK 494
P A + E ++++V + LI ER AR KD++ +D R L
Sbjct: 399 DP-------------DAFFKGEGSDDEVAEIEALIVERNRARSEKDWAAADVARNRLDIL 445
Query: 495 GIALMDMGKETIWR 508
G+ L D T WR
Sbjct: 446 GVVLEDGPSGTTWR 459
>sp|A1RL92|SYC_SHESW Cysteine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=cysS
PE=3 SV=1
Length = 461
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/494 (45%), Positives = 292/494 (59%), Gaps = 42/494 (8%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R VSFD++ RYL ++ EV
Sbjct: 4 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 64 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHRDFDALNMLRPDFEPRATLHIAEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 124 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDENKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ T PA E + +F A M
Sbjct: 304 LNYSEDNLKQARSALERLYTAIKDVDL----------TVAAAPAEEFIV-----KFKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN + K ++ +L ++ +VL +LG
Sbjct: 349 DDDFNTPEAYSVLF-DMVRDIN---------RLKATDIAKASALAVAMKQLADVLGLLGQ 398
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQ---LIEERAAARKNKDFSKSDQIRADLTRK 494
P A + E ++++V + LI ER AR KD+ +D R L
Sbjct: 399 DP-------------DAFFKGEGSDDEVAEIEALIVERNRARSEKDWPAADVARNRLNEL 445
Query: 495 GIALMDMGKETIWR 508
G+ L D T WR
Sbjct: 446 GVVLEDGPSGTTWR 459
>sp|Q5JD45|SYC_PYRKO Cysteine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=cysS PE=3 SV=1
Length = 476
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/494 (43%), Positives = 290/494 (58%), Gaps = 24/494 (4%)
Query: 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ +KIYN++T+QKE F P+ G+V MYVCG T YD +H+GHAR ++FD++ RYLEH
Sbjct: 1 MGIKIYNTLTRQKEEFKPLREGEVRMYVCGPTVYDYTHIGHARTYIAFDVIRRYLEHKGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V V NFTD+DDKII+RAN+ GE+P L+ ++ + +L DM L+ P PRV++H++
Sbjct: 61 TVLMVMNFTDIDDKIIKRANETGEDPKELAEKFLKYFLEDMKALKVKPADIYPRVTEHIQ 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I D I ++ AY V+F V K +YG+LS +LE+ G RV K+NP D
Sbjct: 121 DIIDFIRKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKVKLEDLVKGARVEPGEGKKNPED 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECS MS YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGSDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
Q+ A V YWMH G + N EKMSKSLGNF TIR+ ERY P +R F++ HYRS
Sbjct: 241 QTEACTGHEWVRYWMHTGFLMVNGEKMSKSLGNFVTIREALERYDPEVIRLFVLQRHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+Y+ L+ A + + +Y TL++ VA+ + K A + I R +F+
Sbjct: 301 PLDYTEEGLEHAKNNLERLYNTLENIRVAMERAEISFKWGEEEFEAYEAIRDGRKKFYDA 360
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L F+ + IN L ++K PK+ LRK K V + G
Sbjct: 361 MDDDFNTAEALKAVFEVS-NAINRYLTQVEK--PKES------ILRKAWEFFKMVSEVFG 411
Query: 437 LLPPGAYSEVLQQLKDKALKRAELTEEDVL--QLIEERAAARKNKDFSKSDQIRADLTRK 494
+ + + + EE+ L LI+ RA RK + F +D+IR +L
Sbjct: 412 IF-------------EDYFREQKAGEEEALIKLLIDVRAQLRKERKFDLADKIRDELRNL 458
Query: 495 GIALMDMGKETIWR 508
GI L D + T+W+
Sbjct: 459 GIQLEDTPQGTVWK 472
>sp|B9MMM6|SYC_CALBD Cysteine--tRNA ligase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=cysS PE=3 SV=1
Length = 465
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/487 (43%), Positives = 293/487 (60%), Gaps = 28/487 (5%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
+K+YN++T KE F P+ GKV MYVCG T YD H+G+AR + FD L RY E+ EV
Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYEV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
Y++NFTDV+DK+I RAN G L+ R+ QEY D L T PR ++ +E +
Sbjct: 61 IYIQNFTDVEDKMINRANKEGITVFELAERFIQEYYKDADRLNVKRATKNPRATEEIEDM 120
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
+I ++I+ AYVV+GDV+F K YG+LS + +E AG RV + +K +P DFA
Sbjct: 121 IALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEKKEDPLDFA 180
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKA K GEP+W SPWG GRPGWHIECS M+ YL DIH GG DLIFPHHENEIAQS
Sbjct: 181 LWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPHHENEIAQS 240
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
AA +W+HNG+V NNEKMSKSLGNFFT+R+I E+YHP ALR F++ AHYR PL
Sbjct: 241 EAATGKPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIEKYHPEALRLFMLQAHYRKPL 300
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
N+S+ ++ A A+ IY ++ E + Q ++ + + I +L+ +F M
Sbjct: 301 NFSIDLIEQAEVALKRIYTCYENLEFLI---QNAASSSENDDKLKAAIEELKAKFIDAME 357
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438
DDLNT+ TG + ++ IN+ N K E+L ++ +KE+ ILG+L
Sbjct: 358 DDLNTAEA-TGYLFEMVREINTYANSCSK-----------ETLTFAKDTLKELCSILGIL 405
Query: 439 PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIAL 498
+ E E + +L+L+E+R ARK K+F+++D+IR +L G +
Sbjct: 406 EQYSAKE-------------EAIPQQILELVEKRNQARKAKNFAEADRIRDELKSLGYIV 452
Query: 499 MDMGKET 505
+D + T
Sbjct: 453 LDTPQGT 459
>sp|A9KWH4|SYC_SHEB9 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS195) GN=cysS
PE=3 SV=1
Length = 459
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/491 (45%), Positives = 290/491 (59%), Gaps = 36/491 (7%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ ++ AE+ I K F A M
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVDLTVAA-----------APAEEFIAK----FKAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN L + Q ++L K++ +LGL
Sbjct: 347 DDDFNTPEAYSVLF-DMVREIN-RLKLTDMAQASALAVTL-----------KQLADVLGL 393
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497
L S+ + E+ E + LI ER AR KD++ +D R L G+
Sbjct: 394 L-----SQEPEAFFQGGGSDDEVAE--IEALIVERNRARTEKDWAAADVARNRLNELGVE 446
Query: 498 LMDMGKETIWR 508
L D T WR
Sbjct: 447 LEDGPSGTTWR 457
>sp|C4LG04|SYC_TOLAT Cysteine--tRNA ligase OS=Tolumonas auensis (strain DSM 9187 / TA4)
GN=cysS PE=3 SV=1
Length = 463
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/501 (44%), Positives = 295/501 (58%), Gaps = 53/501 (10%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYN++T+QKE F PI PGKVGMYVCGVT YDL H+GH R V+FD++ RYL +L +V
Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVVRYLRYLGYDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+VRN TDVDDKII+RA + E+ +L+ R + D L+ P +PR + H+ +I
Sbjct: 62 TFVRNITDVDDKIIKRAAENAESCDALTERLIGDMHADFDALKLQRPDIEPRATQHIGEI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
++ +++ + AYV + GDV F+++ P YGRLSGQ +E +AG RV V+ KRNP DF
Sbjct: 122 ITLVQSLLDQNYAYVADSGDVLFSIDSFPEYGRLSGQNIEQLQAGARVDVEESKRNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP WDSPWG GRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPMWDSPWGAGRPGWHIECSAMNSKHLGHHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+ WMH+G V + EKMSKSLGNFFTIR + + Y +R+FL+S HYRSP
Sbjct: 242 SCCAHHTPYVNTWMHSGMVMVDEEKMSKSLGNFFTIRDVLKVYDAETVRYFLMSGHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCE-----VALS-PFQEHGKTARINPAAEDCINKLRD 371
LNYS L L A ++ +Y L+ E ALS PF E
Sbjct: 302 LNYSDLNLQQARASLERLYTALRGVEDGEEQAALSAPFDE-------------------- 341
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
F A M DD NT + F + LN K+ P ++L LR++
Sbjct: 342 RFKAAMDDDFNTPEAYSVLFD-----LARDLNRAKQDSPA-DAVALAACLRRLGG----- 390
Query: 432 LRILGLLPPGAYSEVLQQLKDKALKRAELTEED----VLQLIEERAAARKNKDFSKSDQI 487
+LGL LQQ ++ L+ E D + LI+ R AR +K+++ +D+
Sbjct: 391 --VLGL---------LQQQPEQFLQSGAAAETDDVAEIELLIKTRNDARASKNWALADEA 439
Query: 488 RADLTRKGIALMDMGKETIWR 508
R LT GI L D + T WR
Sbjct: 440 RNKLTEMGIVLEDGPQGTTWR 460
>sp|B8E5F2|SYC_SHEB2 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS223) GN=cysS
PE=3 SV=1
Length = 459
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/491 (45%), Positives = 290/491 (59%), Gaps = 36/491 (7%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ ++ AE+ + K F A M
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVDLTVAA-----------APAEEFVAK----FKAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN L + Q ++L K++ +LGL
Sbjct: 347 DDDFNTPEAYSVLF-DMVREIN-RLKLTDMAQASALAVTL-----------KQLADVLGL 393
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497
L S+ + E+ E + LI ER AR KD++ +D R L G+
Sbjct: 394 L-----SQEPEAFFQGGGSDDEVAE--IEALIVERNRARTEKDWAAADVARNRLNELGVE 446
Query: 498 LMDMGKETIWR 508
L D T WR
Sbjct: 447 LEDSPSGTTWR 457
>sp|C4XSW5|SYC_DESMR Cysteine--tRNA ligase OS=Desulfovibrio magneticus (strain ATCC
700980 / DSM 13731 / RS-1) GN=cysS PE=3 SV=1
Length = 485
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/490 (44%), Positives = 293/490 (59%), Gaps = 9/490 (1%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
+++YN+MT+ KE F VPGKV MYVCG+TAYDL H+GHAR++V FD+L RYL H+ +V
Sbjct: 1 MQLYNTMTRTKEPFVSRVPGKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHIGFDV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+VRNFTDVDDKII++AN G ++ RY + DM L L P +P+ ++++ ++
Sbjct: 61 TFVRNFTDVDDKIIKKANAEGTTSQEIAERYIATFYEDMDKLGILRPNAEPKATEYIGEM 120
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+ ++I++ AY GDV+F V YG+LSG+ +E+ R+G RVA K +P DF
Sbjct: 121 ASLAQRLIDSGHAYRTPSGDVYFRVRSFAGYGKLSGRDVEDMRSGARVAPGEEKEDPLDF 180
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWKA+K GEP W+SP+GPGRPGWH+ECSAMS L DIHGGG DLIFPHHENEIAQ
Sbjct: 181 ALWKASKPGEPVWESPFGPGRPGWHLECSAMSEKLLGMPIDIHGGGQDLIFPHHENEIAQ 240
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA YW+HNG V N EKMSKSLGNF TIR I RY P LR FL+S+ YRSP
Sbjct: 241 SEAAIGGEFCRYWVHNGFVRINTEKMSKSLGNFITIRDIYARYLPEVLRFFLLSSQYRSP 300
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
L+YS LD A + IY E AL + ++ + +++ + F A M
Sbjct: 301 LDYSDQGLDEAEKGIKRIYAAKVQMEQALG--RAKWSETKLPADVTEELSRHEEGFTAAM 358
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DDLNT+ + F L + L M K K ++ + E L +I + +LG+
Sbjct: 359 DDDLNTAQAMGHVF--GLVRLAGRL-MEDKTLAKSRETA--EVLGRILADFGVWAEVLGV 413
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497
A + L LK L R + V L+ ER ARK KDF++SD IR +L G+
Sbjct: 414 FGTDA-TAFLADLKACRLTRLGIDAARVDGLVAERQDARKAKDFARSDAIRDELASLGVT 472
Query: 498 LMDMGKETIW 507
+MD W
Sbjct: 473 VMDTPTGPQW 482
>sp|B1KLU0|SYC_SHEWM Cysteine--tRNA ligase OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=cysS PE=3 SV=1
Length = 459
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/491 (44%), Positives = 291/491 (59%), Gaps = 36/491 (7%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YNS+T+QKE F P+ PGKVGMYVCG+T YDL H+GH R V+FD++ RYL + +V
Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKVGMYVCGITIYDLCHIGHGRTFVAFDMIVRYLRYSGYDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
++RN TDVDDKII+RA + E+ SL+ R E D L P ++PR + HM +I
Sbjct: 62 NFLRNITDVDDKIIKRAAENKESCDSLTERLIGEMHKDFDSLNMKRPDFEPRATLHMAEI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+M+ ++I + AYV GDV F+V P YGRLSGQ LE +AG RV V+ KR+P DF
Sbjct: 122 IEMVEKLIEKEHAYVSSNGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVEDSKRDPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSL NFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHNTPYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLAHYDAATIRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y L+D ++ + P AAE+ ++K F M
Sbjct: 302 LNYSEDNLKQAKSALARLYTALKDLDLTVEP-----------AAAENFVSK----FKQAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ +N + +++ + + +KE+ +LG+
Sbjct: 347 DDDFNTPEAYSVLF-DMVREVN------------RLKVTDLAQASALAVRLKELAGVLGI 393
Query: 438 LPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497
L S + D AE+ E V LI ER AR KD+ +D R L G+
Sbjct: 394 LEQDVDSFFKGESND-----AEVAE--VEALIAERNRARAEKDWPAADIARDGLNALGVI 446
Query: 498 LMDMGKETIWR 508
L D + T WR
Sbjct: 447 LEDGPEGTTWR 457
>sp|A3D302|SYC_SHEB5 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=cysS PE=3 SV=1
Length = 459
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/500 (44%), Positives = 290/500 (58%), Gaps = 54/500 (10%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI PGK+GMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ ++ AE+ + K F A M
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVDLTVAA-----------APAEEFVAK----FKAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN L + Q ++L K++ +LGL
Sbjct: 347 DDDFNTPEAYSVLF-DMVREIN-RLKLTDMAQASALAVTL-----------KQLADVLGL 393
Query: 438 LP---------PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIR 488
L G+Y EV + + LI ER AR KD++ +D R
Sbjct: 394 LSQEPEAFFQGGGSYDEVAE----------------IEALIVERNRARTEKDWAAADVAR 437
Query: 489 ADLTRKGIALMDMGKETIWR 508
L G+ L D T WR
Sbjct: 438 NCLNELGVELEDGPSGTTWR 457
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,929,000
Number of Sequences: 539616
Number of extensions: 8485615
Number of successful extensions: 31272
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 27669
Number of HSP's gapped (non-prelim): 1425
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)