Query 009329
Match_columns 537
No_of_seqs 364 out of 2393
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 23:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0215 CysS Cysteinyl-tRNA sy 100.0 2E-131 4E-136 1012.6 43.6 456 18-510 1-464 (464)
2 PLN02946 cysteine-tRNA ligase 100.0 1E-126 3E-131 1013.2 48.1 497 13-515 54-550 (557)
3 PRK14535 cysS cysteinyl-tRNA s 100.0 2E-121 5E-126 975.2 48.5 464 9-509 218-698 (699)
4 PRK14536 cysS cysteinyl-tRNA s 100.0 9E-119 2E-123 944.7 48.8 467 18-509 2-489 (490)
5 PRK14534 cysS cysteinyl-tRNA s 100.0 2E-116 3E-121 922.8 47.4 464 18-510 2-481 (481)
6 PTZ00399 cysteinyl-tRNA-synthe 100.0 5E-116 1E-120 958.9 45.9 490 16-520 37-558 (651)
7 PRK00260 cysS cysteinyl-tRNA s 100.0 1E-114 3E-119 923.5 49.4 462 18-510 2-463 (463)
8 TIGR00435 cysS cysteinyl-tRNA 100.0 8E-114 2E-118 915.3 47.1 463 19-509 1-465 (465)
9 KOG2007 Cysteinyl-tRNA synthet 100.0 2E-114 5E-119 870.9 34.2 482 13-514 29-526 (586)
10 TIGR03447 mycothiol_MshC cyste 100.0 6E-104 1E-108 813.2 34.5 368 12-401 11-388 (411)
11 PF01406 tRNA-synt_1e: tRNA sy 100.0 4E-100 8E-105 747.0 23.6 299 32-330 1-300 (300)
12 PRK12418 cysteinyl-tRNA synthe 100.0 1.2E-98 3E-103 771.1 32.4 354 33-406 2-366 (384)
13 cd00672 CysRS_core catalytic c 100.0 9.1E-64 2E-68 478.6 21.2 213 20-321 1-213 (213)
14 COG0143 MetG Methionyl-tRNA sy 100.0 3E-61 6.6E-66 512.8 39.2 406 40-451 5-511 (558)
15 PRK11893 methionyl-tRNA synthe 100.0 7.8E-60 1.7E-64 513.5 36.0 397 39-450 2-474 (511)
16 PLN02224 methionine-tRNA ligas 100.0 8.4E-57 1.8E-61 489.1 38.4 401 41-450 70-544 (616)
17 PLN02610 probable methionyl-tR 100.0 1.2E-55 2.6E-60 493.3 38.5 410 37-451 14-531 (801)
18 PRK00133 metG methionyl-tRNA s 100.0 1E-55 2.3E-60 492.0 36.7 404 42-451 4-502 (673)
19 TIGR00398 metG methionyl-tRNA 100.0 3E-55 6.5E-60 478.6 37.6 403 42-450 3-501 (530)
20 PRK12267 methionyl-tRNA synthe 100.0 3.4E-55 7.4E-60 487.2 35.9 400 41-451 5-477 (648)
21 PRK12268 methionyl-tRNA synthe 100.0 1.3E-53 2.8E-58 468.3 36.5 406 41-451 4-509 (556)
22 KOG0436 Methionyl-tRNA synthet 100.0 1.1E-52 2.3E-57 415.3 28.9 393 41-438 40-509 (578)
23 cd00668 Ile_Leu_Val_MetRS_core 100.0 3.8E-52 8.2E-57 424.8 19.3 269 41-320 3-312 (312)
24 PF09334 tRNA-synt_1g: tRNA sy 100.0 6.6E-49 1.4E-53 409.7 22.4 292 42-338 1-389 (391)
25 PRK01611 argS arginyl-tRNA syn 100.0 4.5E-48 9.8E-53 418.0 26.3 362 36-440 109-504 (507)
26 cd00814 MetRS_core catalytic c 100.0 1.9E-46 4.2E-51 383.4 21.3 273 42-320 2-319 (319)
27 PRK13208 valS valyl-tRNA synth 100.0 9.1E-44 2E-48 404.0 29.4 404 41-451 41-705 (800)
28 TIGR00422 valS valyl-tRNA synt 100.0 1.1E-41 2.5E-46 389.6 32.1 404 40-451 35-699 (861)
29 cd00812 LeuRS_core catalytic c 100.0 4.5E-43 9.7E-48 357.5 16.0 268 42-322 4-314 (314)
30 PRK05729 valS valyl-tRNA synth 100.0 4.8E-41 1E-45 384.2 32.2 406 40-452 38-693 (874)
31 TIGR00395 leuS_arch leucyl-tRN 100.0 1.8E-40 3.8E-45 380.4 33.5 201 236-451 573-777 (938)
32 cd00817 ValRS_core catalytic c 100.0 5.1E-42 1.1E-46 358.4 17.5 275 41-320 4-382 (382)
33 COG0525 ValS Valyl-tRNA synthe 100.0 2E-40 4.4E-45 362.6 30.3 418 30-452 22-699 (877)
34 PRK14900 valS valyl-tRNA synth 100.0 2.5E-39 5.5E-44 373.1 32.0 405 40-451 50-714 (1052)
35 cd00818 IleRS_core catalytic c 100.0 4.5E-41 9.7E-46 345.8 14.4 275 40-320 3-338 (338)
36 PLN02943 aminoacyl-tRNA ligase 100.0 6.1E-39 1.3E-43 367.5 33.3 402 41-451 91-770 (958)
37 PRK05743 ileS isoleucyl-tRNA s 100.0 1.2E-38 2.6E-43 364.3 29.4 408 38-451 47-769 (912)
38 PRK00390 leuS leucyl-tRNA synt 100.0 4.5E-38 9.8E-43 355.5 30.4 385 41-451 33-722 (805)
39 COG0018 ArgS Arginyl-tRNA synt 100.0 2E-37 4.4E-42 333.2 33.2 362 36-440 115-574 (577)
40 TIGR00456 argS arginyl-tRNA sy 100.0 1.3E-37 2.7E-42 340.3 30.5 369 26-440 98-563 (566)
41 TIGR00396 leuS_bact leucyl-tRN 100.0 8E-38 1.7E-42 354.1 29.5 393 38-451 27-758 (842)
42 PRK06039 ileS isoleucyl-tRNA s 100.0 1E-37 2.2E-42 359.4 28.6 407 40-451 43-771 (975)
43 PLN02882 aminoacyl-tRNA ligase 100.0 4.5E-37 9.7E-42 355.8 30.2 215 235-452 566-801 (1159)
44 PLN02843 isoleucyl-tRNA synthe 100.0 8.8E-37 1.9E-41 349.8 30.7 213 235-451 563-796 (974)
45 PRK12451 arginyl-tRNA syntheta 100.0 4.7E-36 1E-40 326.8 33.2 358 37-440 112-559 (562)
46 TIGR00392 ileS isoleucyl-tRNA 100.0 2.3E-36 4.9E-41 346.3 32.1 209 236-451 564-790 (861)
47 KOG1247 Methionyl-tRNA synthet 100.0 3.1E-37 6.7E-42 305.1 19.4 416 30-450 5-518 (567)
48 PRK13804 ileS isoleucyl-tRNA s 100.0 3.7E-36 8.1E-41 344.7 31.4 211 235-451 582-807 (961)
49 PLN02381 valyl-tRNA synthetase 100.0 7.7E-36 1.7E-40 343.7 31.7 408 40-451 130-871 (1066)
50 PTZ00419 valyl-tRNA synthetase 100.0 7.1E-36 1.5E-40 345.5 30.2 408 40-451 62-804 (995)
51 PLN02286 arginine-tRNA ligase 100.0 1.3E-34 2.8E-39 315.6 32.2 357 37-440 116-573 (576)
52 PRK12300 leuS leucyl-tRNA synt 100.0 7.8E-35 1.7E-39 332.5 29.5 198 236-451 530-731 (897)
53 PLN02563 aminoacyl-tRNA ligase 100.0 7.1E-35 1.5E-39 330.9 27.3 127 38-164 108-240 (963)
54 PTZ00427 isoleucine-tRNA ligas 100.0 5E-33 1.1E-37 321.1 31.4 211 236-451 673-905 (1205)
55 COG0495 LeuS Leucyl-tRNA synth 100.0 4.7E-33 1E-37 306.0 28.1 403 28-451 20-732 (814)
56 COG0060 IleS Isoleucyl-tRNA sy 100.0 1.1E-32 2.4E-37 305.5 27.1 211 238-452 557-780 (933)
57 cd00674 LysRS_core_class_I cat 100.0 3.2E-32 6.9E-37 277.6 21.9 273 39-335 19-328 (353)
58 PLN02959 aminoacyl-tRNA ligase 100.0 1.1E-29 2.3E-34 293.8 30.5 204 236-450 671-877 (1084)
59 cd00671 ArgRS_core catalytic c 100.0 3.2E-30 7E-35 248.5 20.5 203 39-288 1-212 (212)
60 PRK00750 lysK lysyl-tRNA synth 100.0 4.3E-30 9.3E-35 276.2 22.0 278 40-339 24-336 (510)
61 TIGR00467 lysS_arch lysyl-tRNA 100.0 4.4E-29 9.5E-34 266.3 18.2 272 40-341 19-332 (515)
62 KOG0432 Valyl-tRNA synthetase 100.0 1.3E-27 2.8E-32 256.0 25.4 207 236-450 546-806 (995)
63 PF00133 tRNA-synt_1: tRNA syn 100.0 1.7E-28 3.7E-33 270.5 15.1 124 41-164 26-169 (601)
64 KOG0435 Leucyl-tRNA synthetase 100.0 5.6E-27 1.2E-31 244.5 20.8 121 42-163 61-185 (876)
65 PRK04156 gltX glutamyl-tRNA sy 99.9 3.8E-27 8.3E-32 251.8 16.6 260 37-331 99-404 (567)
66 cd00802 class_I_aaRS_core cata 99.9 2.5E-26 5.4E-31 207.9 13.6 142 42-287 1-143 (143)
67 KOG0433 Isoleucyl-tRNA synthet 99.9 2.6E-24 5.7E-29 226.5 28.5 207 236-450 566-795 (937)
68 PF01921 tRNA-synt_1f: tRNA sy 99.9 1.1E-24 2.5E-29 219.6 12.2 276 38-338 22-339 (360)
69 COG1384 LysS Lysyl-tRNA synthe 99.9 5.2E-24 1.1E-28 219.9 15.9 277 39-339 19-335 (521)
70 KOG4426 Arginyl-tRNA synthetas 99.9 2.1E-22 4.6E-27 200.9 26.2 358 35-440 185-653 (656)
71 PF00750 tRNA-synt_1d: tRNA sy 99.9 5.3E-23 1.1E-27 212.8 15.8 242 36-322 18-354 (354)
72 cd07963 Anticodon_Ia_Cys Antic 99.9 2E-20 4.3E-25 171.7 17.2 155 323-509 2-156 (156)
73 cd09287 GluRS_non_core catalyt 99.9 7.9E-21 1.7E-25 183.2 14.6 208 43-330 4-231 (240)
74 KOG0434 Isoleucyl-tRNA synthet 99.8 6.7E-19 1.5E-23 184.3 21.1 212 236-451 554-784 (1070)
75 KOG1195 Arginyl-tRNA synthetas 99.8 2.9E-17 6.2E-22 168.1 24.6 358 37-440 109-564 (567)
76 TIGR00464 gltX_bact glutamyl-t 99.7 6.5E-17 1.4E-21 172.6 18.6 249 46-329 7-312 (470)
77 PRK12410 glutamylglutaminyl-tR 99.7 1.6E-16 3.5E-21 165.9 17.7 245 46-327 5-281 (433)
78 PRK12558 glutamyl-tRNA synthet 99.7 1.2E-16 2.6E-21 167.6 15.9 247 46-328 8-288 (445)
79 TIGR00463 gltX_arch glutamyl-t 99.7 2.8E-16 6.1E-21 168.4 18.0 252 46-331 99-395 (560)
80 PRK01406 gltX glutamyl-tRNA sy 99.7 5.2E-16 1.1E-20 165.7 18.3 219 46-310 10-279 (476)
81 PRK14895 gltX glutamyl-tRNA sy 99.7 1.3E-15 2.9E-20 161.5 19.9 244 46-327 10-287 (513)
82 PLN03233 putative glutamate-tR 99.7 6.3E-16 1.4E-20 164.0 16.8 252 46-331 17-312 (523)
83 cd00418 GlxRS_core catalytic c 99.7 2.6E-15 5.6E-20 144.5 15.6 174 46-314 7-185 (230)
84 PRK05347 glutaminyl-tRNA synth 99.6 3.5E-15 7.6E-20 158.9 17.5 255 45-331 34-336 (554)
85 PLN02627 glutamyl-tRNA synthet 99.6 3.3E-15 7.2E-20 158.7 16.1 237 46-328 51-342 (535)
86 PRK05710 glutamyl-Q tRNA(Asp) 99.6 5.8E-15 1.2E-19 147.5 14.0 216 46-312 11-262 (299)
87 PRK14703 glutaminyl-tRNA synth 99.6 1.7E-14 3.7E-19 159.9 19.0 252 45-331 36-339 (771)
88 PTZ00402 glutamyl-tRNA synthet 99.6 1.7E-14 3.6E-19 154.8 18.3 256 46-331 58-354 (601)
89 TIGR03838 queuosine_YadB gluta 99.6 1E-14 2.2E-19 144.2 14.5 229 46-325 6-271 (272)
90 COG0008 GlnS Glutamyl- and glu 99.6 6.7E-15 1.5E-19 155.4 13.7 247 45-327 14-299 (472)
91 PLN02907 glutamate-tRNA ligase 99.6 1.7E-14 3.6E-19 160.5 17.2 253 45-331 218-514 (722)
92 cd00807 GlnRS_core catalytic c 99.6 2.3E-14 4.9E-19 138.0 15.8 203 46-330 7-229 (238)
93 PF00749 tRNA-synt_1c: tRNA sy 99.6 4.3E-14 9.4E-19 143.7 16.6 222 46-312 7-275 (314)
94 PTZ00437 glutaminyl-tRNA synth 99.6 7.1E-14 1.5E-18 148.8 18.0 255 37-331 49-352 (574)
95 TIGR00440 glnS glutaminyl-tRNA 99.6 5.4E-14 1.2E-18 149.6 16.9 253 46-330 6-306 (522)
96 PLN02859 glutamine-tRNA ligase 99.6 4.2E-14 9.2E-19 155.2 15.3 271 21-328 247-563 (788)
97 cd00808 GluRS_core catalytic c 99.5 1E-13 2.3E-18 134.5 15.4 185 46-325 7-208 (239)
98 KOG1149 Glutamyl-tRNA syntheta 99.4 5.8E-12 1.2E-16 127.2 15.2 244 46-328 39-330 (524)
99 KOG0437 Leucyl-tRNA synthetase 99.3 2.2E-12 4.7E-17 137.1 8.4 166 235-401 662-829 (1080)
100 cd07956 Anticodon_Ia_Arg Antic 99.1 7E-10 1.5E-14 101.8 12.7 140 299-440 2-153 (156)
101 PF09190 DALR_2: DALR domain; 98.5 2.8E-07 6.1E-12 70.9 7.3 57 372-440 1-57 (63)
102 PF05746 DALR_1: DALR anticodo 98.4 7.6E-07 1.6E-11 77.6 8.1 104 335-440 1-116 (119)
103 cd07962 Anticodon_Ia_Val Antic 98.4 5.5E-06 1.2E-10 73.9 12.6 125 320-447 1-132 (135)
104 KOG1147 Glutamyl-tRNA syntheta 98.3 2.5E-06 5.5E-11 88.9 9.4 98 38-155 199-296 (712)
105 cd07958 Anticodon_Ia_Leu_BEm A 98.2 1.8E-05 4E-10 68.2 11.6 113 320-447 1-114 (117)
106 cd07957 Anticodon_Ia_Met Antic 98.1 2.9E-05 6.2E-10 68.2 10.8 90 356-448 35-127 (129)
107 smart00840 DALR_2 This DALR do 98.1 7.9E-06 1.7E-10 61.1 5.7 54 373-437 2-55 (56)
108 cd07960 Anticodon_Ia_Ile_BEm A 98.0 7.7E-05 1.7E-09 70.0 13.0 129 320-451 1-140 (180)
109 cd07959 Anticodon_Ia_Leu_AEc A 98.0 9E-05 2E-09 64.0 12.5 113 320-448 1-115 (117)
110 PRK13354 tyrosyl-tRNA syntheta 98.0 2E-05 4.3E-10 83.2 9.5 72 236-312 186-258 (410)
111 smart00836 DALR_1 DALR anticod 97.8 0.00011 2.4E-09 64.3 9.0 104 335-440 1-119 (122)
112 cd00805 TyrRS_core catalytic c 97.8 5.4E-05 1.2E-09 75.7 7.4 76 43-123 3-81 (269)
113 cd07955 Anticodon_Ia_Cys_like 97.8 9.5E-05 2.1E-09 59.8 7.2 58 323-400 2-60 (81)
114 PRK12285 tryptophanyl-tRNA syn 97.8 0.00014 3.1E-09 75.6 10.3 86 38-135 64-150 (368)
115 cd00395 Tyr_Trp_RS_core cataly 97.8 4.7E-05 1E-09 76.2 6.5 74 236-313 153-227 (273)
116 cd07961 Anticodon_Ia_Ile_ABEc 97.6 0.00083 1.8E-08 63.1 12.9 128 320-451 1-141 (183)
117 PRK05912 tyrosyl-tRNA syntheta 97.6 8.2E-05 1.8E-09 78.6 6.6 72 236-312 188-260 (408)
118 PTZ00126 tyrosyl-tRNA syntheta 97.6 0.00032 7E-09 73.3 10.6 91 38-137 64-155 (383)
119 PRK08560 tyrosyl-tRNA syntheta 97.6 8.8E-05 1.9E-09 76.3 6.3 71 42-124 32-102 (329)
120 cd07375 Anticodon_Ia_like Anti 97.6 0.00086 1.9E-08 57.3 11.4 52 357-410 39-90 (117)
121 PF00579 tRNA-synt_1b: tRNA sy 97.6 0.00012 2.5E-09 74.4 6.3 87 39-135 4-93 (292)
122 cd00806 TrpRS_core catalytic c 97.6 0.00058 1.3E-08 68.7 11.2 71 43-124 2-72 (280)
123 TIGR00233 trpS tryptophanyl-tR 97.5 0.0004 8.6E-09 71.4 9.0 86 228-321 131-229 (328)
124 PRK12556 tryptophanyl-tRNA syn 97.4 0.00054 1.2E-08 70.4 8.7 81 42-133 5-86 (332)
125 PRK12282 tryptophanyl-tRNA syn 97.4 0.0054 1.2E-07 63.2 15.3 72 41-124 3-74 (333)
126 PLN02486 aminoacyl-tRNA ligase 97.3 0.0015 3.3E-08 68.2 10.9 77 37-124 70-147 (383)
127 COG0180 TrpS Tryptophanyl-tRNA 97.3 0.0018 3.8E-08 65.4 10.8 74 40-124 5-79 (314)
128 COG0162 TyrS Tyrosyl-tRNA synt 97.3 0.00038 8.3E-09 72.7 5.6 55 236-293 180-235 (401)
129 PF08264 Anticodon_1: Anticodo 97.2 0.00085 1.8E-08 60.9 6.9 88 359-450 1-92 (153)
130 PTZ00348 tyrosyl-tRNA syntheta 97.2 0.001 2.2E-08 74.0 8.3 87 42-137 34-121 (682)
131 PRK12284 tryptophanyl-tRNA syn 97.1 0.0025 5.4E-08 67.0 10.1 71 43-124 5-75 (431)
132 KOG1148 Glutaminyl-tRNA synthe 97.0 0.0014 3E-08 69.7 6.4 97 37-153 246-342 (764)
133 PRK12283 tryptophanyl-tRNA syn 96.9 0.0018 4E-08 67.4 6.2 70 42-124 4-74 (398)
134 TIGR00234 tyrS tyrosyl-tRNA sy 96.8 0.0023 4.9E-08 67.1 6.3 38 41-82 31-69 (377)
135 KOG0437 Leucyl-tRNA synthetase 96.7 0.0084 1.8E-07 65.6 9.8 61 37-97 41-103 (1080)
136 PRK00927 tryptophanyl-tRNA syn 96.7 0.0037 7.9E-08 64.5 6.7 70 42-124 3-72 (333)
137 KOG2007 Cysteinyl-tRNA synthet 95.8 0.023 5.1E-07 59.8 7.0 52 462-513 525-576 (586)
138 COG1656 Uncharacterized conser 93.7 0.1 2.3E-06 47.3 4.7 88 67-170 18-105 (165)
139 PF01927 Mut7-C: Mut7-C RNAse 78.6 2.6 5.6E-05 38.1 3.9 32 67-100 12-43 (147)
140 PLN02886 aminoacyl-tRNA ligase 71.5 2.6 5.7E-05 44.2 2.3 69 42-124 48-117 (389)
141 PRK01233 glyS glycyl-tRNA synt 70.6 23 0.00049 40.2 9.5 98 332-431 568-674 (682)
142 PF02151 UVR: UvrB/uvrC motif; 68.6 9.1 0.0002 25.6 3.6 30 464-493 3-32 (36)
143 PF10009 DUF2252: Uncharacteri 67.8 19 0.00041 38.0 7.8 91 46-148 41-153 (385)
144 PLN02886 aminoacyl-tRNA ligase 67.6 17 0.00036 38.3 7.2 26 227-253 175-200 (389)
145 TIGR00211 glyS glycyl-tRNA syn 65.9 30 0.00065 39.4 9.2 98 332-431 578-684 (691)
146 KOG1610 Corticosteroid 11-beta 63.7 21 0.00046 36.2 6.8 69 51-120 176-251 (322)
147 COG0751 GlyS Glycyl-tRNA synth 60.3 55 0.0012 36.9 9.8 95 334-430 579-682 (691)
148 KOG2145 Cytoplasmic tryptophan 58.0 12 0.00025 37.4 3.7 76 37-123 82-158 (397)
149 PRK14908 glycyl-tRNA synthetas 54.8 71 0.0015 37.8 9.9 96 332-431 893-994 (1000)
150 PRK13671 hypothetical protein; 47.9 81 0.0018 32.0 8.0 69 49-123 8-95 (298)
151 PF14359 DUF4406: Domain of un 47.2 29 0.00064 28.6 4.0 33 42-79 1-33 (92)
152 COG2257 Uncharacterized homolo 47.0 72 0.0016 26.1 5.9 61 80-147 26-87 (92)
153 KOG2623 Tyrosyl-tRNA synthetas 44.8 31 0.00067 36.0 4.4 45 41-89 64-111 (467)
154 KOG2144 Tyrosyl-tRNA synthetas 44.2 9.7 0.00021 37.9 0.8 67 40-123 35-110 (360)
155 PLN02413 choline-phosphate cyt 43.1 27 0.00059 35.0 3.7 40 36-84 24-63 (294)
156 COG3286 Uncharacterized protei 40.6 54 0.0012 30.8 4.9 86 58-155 85-176 (204)
157 PF03033 Glyco_transf_28: Glyc 38.6 31 0.00067 29.9 3.1 31 55-89 9-39 (139)
158 cd02156 nt_trans nucleotidyl t 36.4 18 0.00039 30.3 1.2 15 45-60 4-18 (105)
159 TIGR00640 acid_CoA_mut_C methy 33.6 1.3E+02 0.0027 26.6 6.1 39 61-100 16-54 (132)
160 PLN02200 adenylate kinase fami 32.6 1.3E+02 0.0028 29.3 6.6 45 13-57 12-61 (234)
161 PRK09620 hypothetical protein; 32.3 64 0.0014 31.4 4.4 48 38-85 3-53 (229)
162 TIGR01501 MthylAspMutase methy 31.8 1.4E+02 0.003 26.5 6.0 74 48-150 8-81 (134)
163 KOG2804 Phosphorylcholine tran 30.9 24 0.00053 35.4 1.2 40 37-85 61-100 (348)
164 KOG2805 tRNA (5-methylaminomet 27.9 1.4E+02 0.003 30.4 5.8 73 66-150 20-95 (377)
165 KOG0909 Peptide:N-glycanase [P 27.5 1.2E+02 0.0026 32.2 5.5 52 36-87 188-250 (500)
166 COG3340 PepE Peptidase E [Amin 27.1 1.8E+02 0.0039 28.0 6.2 103 42-169 4-106 (224)
167 COG1838 FumA Tartrate dehydrat 26.9 1.7E+02 0.0037 27.3 5.8 63 34-97 50-115 (184)
168 PF00392 GntR: Bacterial regul 26.3 2.7E+02 0.0059 20.6 6.9 52 109-160 5-63 (64)
169 TIGR00125 cyt_tran_rel cytidyl 25.7 88 0.0019 23.2 3.3 29 49-84 7-35 (66)
170 KOG2713 Mitochondrial tryptoph 25.5 1E+02 0.0022 31.0 4.3 76 40-124 13-88 (347)
171 PF04127 DFP: DNA / pantothena 24.8 62 0.0013 30.4 2.7 49 38-86 3-54 (185)
172 PF03698 UPF0180: Uncharacteri 24.4 50 0.0011 26.5 1.7 45 66-113 12-79 (80)
173 cd02173 ECT CTP:phosphoethanol 23.7 1.1E+02 0.0024 27.6 4.1 36 41-85 4-39 (152)
174 cd02174 CCT CTP:phosphocholine 23.6 1.2E+02 0.0025 27.5 4.1 20 39-60 2-21 (150)
175 cd02072 Glm_B12_BD B12 binding 23.2 3E+02 0.0064 24.2 6.5 66 62-150 14-79 (128)
176 PF02662 FlpD: Methyl-viologen 22.3 5.1E+02 0.011 22.4 7.9 89 60-149 11-124 (124)
177 PTZ00308 ethanolamine-phosphat 22.0 1.1E+02 0.0024 31.9 4.2 43 34-85 6-48 (353)
178 COG3171 Uncharacterized protei 21.8 1E+02 0.0022 26.3 3.1 57 114-170 23-87 (119)
179 COG1908 FrhD Coenzyme F420-red 21.3 5.6E+02 0.012 22.4 7.6 72 78-150 32-126 (132)
180 PRK08116 hypothetical protein; 20.7 84 0.0018 31.3 2.9 38 38-83 113-150 (268)
No 1
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-131 Score=1012.61 Aligned_cols=456 Identities=49% Similarity=0.842 Sum_probs=411.5
Q ss_pred ceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH
Q 009329 18 TLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (537)
Q Consensus 18 ~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~ 97 (537)
.|+|||||||++++|.|.+|++|+||+||||||+.+||||+|++|.+|+|+|+|+++||.|.||+||||+||||+++|.+
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~ 80 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRARE 80 (464)
T ss_pred CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeee-ecceeecCCCCCCCCCCcch-h
Q 009329 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQ-R 175 (537)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~-~~~v~f~~~~~~~yG~ls~~-~ 175 (537)
.|.++.+++++|+.+|++||++|||.+|+.+||+|+||++|+++|++|+++|+||+. +|+|||+++++|+||+||+. .
T Consensus 81 ~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~ 160 (464)
T COG0215 81 EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDS 160 (464)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCC
Confidence 999999999999999999999999988999999999999999999999999999998 78999999999999999966 8
Q ss_pred chhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhH
Q 009329 176 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (537)
Q Consensus 176 l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~ 255 (537)
++++..|.+++.+..|+||.||+|||++++|+|+|+||||.||||||||||+|+.++||.++|||+||.||+||||+||+
T Consensus 161 le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEi 240 (464)
T COG0215 161 LEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240 (464)
T ss_pred hhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHH
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccC-CCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Q 009329 256 AQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFY 334 (537)
Q Consensus 256 a~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~ 334 (537)
||++|+++ ++|++||||+|||+++|+|||||+|||+|++|+|++|+|++|||+||++|||+|++||++.|+++.+.+.+
T Consensus 241 AQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~r 320 (464)
T COG0215 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALER 320 (464)
T ss_pred HHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 99999998 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhh
Q 009329 335 IYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 414 (537)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~ 414 (537)
|++++.++........ .. .+..+..+|.+||+||||||.|++. |+++++.+|...+.+...
T Consensus 321 l~~~~~~~~~~~~~~~-------~~-----~~~~~~~~f~~al~DDfnt~~al~~-l~~l~~~~~~~~~~~~~~------ 381 (464)
T COG0215 321 LYNALRRLRDLAGDAE-------LA-----DLKEFEARFREALDDDFNTPKALAV-LFELAKEINRLLEEGKSD------ 381 (464)
T ss_pred HHHHHHHHHhhccccc-------cc-----hhHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHhhhhhccccc------
Confidence 9999987653322110 00 3456777899999999999999999 999999998766544310
Q ss_pred HHHHHHHHHHHHHHHHHHh-----hcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhcCCChhHhHHHHH
Q 009329 415 LSLIESLRKIENEVKEVLR-----ILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRA 489 (537)
Q Consensus 415 ~~~~~~l~~~~~~l~~~l~-----vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~~Kdf~~AD~IRd 489 (537)
...++..+..++. +||+.+. .. . ...+..+++|+.||++|++||++|||++||+|||
T Consensus 382 ------~~~~~~~~~~~~~~lg~~~l~~~~~-~~----~-------~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd 443 (464)
T COG0215 382 ------AKAVLSALKALLAILGLKVLGLFPQ-SG----A-------QEDESDDEEIEALIEERLEARKAKNWALADEIRD 443 (464)
T ss_pred ------hHHHHHHHHHHHHHhCchhhccccc-cc----c-------ccccchHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 0112222333333 5555543 10 0 0112257889999999999999999999999999
Q ss_pred HcHhCCCEEEecCCceEEEeC
Q 009329 490 DLTRKGIALMDMGKETIWRPC 510 (537)
Q Consensus 490 ~L~~~GI~l~D~~~Gt~W~~~ 510 (537)
+|.++||.|+|||+||+|++.
T Consensus 444 ~L~~~Gi~leD~~~gt~w~~~ 464 (464)
T COG0215 444 ELLALGIILEDTPDGTTWRRK 464 (464)
T ss_pred HHHHCCcEEEECCCCeEEEeC
Confidence 999999999999999999973
No 2
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.2e-126 Score=1013.21 Aligned_cols=497 Identities=65% Similarity=1.104 Sum_probs=435.1
Q ss_pred CCCCCceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHH
Q 009329 13 PKMDLTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKII 92 (537)
Q Consensus 13 ~~~~~~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~ 92 (537)
....++|+|||||||+||+|.|.++++|+||+|||||||++||||+|++|.+|+|+|||++.||+|.||+|+|||||||+
T Consensus 54 ~~~~~~l~lyNTltr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi 133 (557)
T PLN02946 54 ASRGRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKII 133 (557)
T ss_pred CCCCCceEEEECCCCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHH
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCc
Q 009329 93 RRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLS 172 (537)
Q Consensus 93 ~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls 172 (537)
.+|+++|++|.+++++|++.|.++|+.|||.+++++|++|+|++.|+++|++|+++|+||+++++||||++++++||+||
T Consensus 134 ~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls 213 (557)
T PLN02946 134 ARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLS 213 (557)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhhhhcC
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred chhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccch
Q 009329 173 GQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 252 (537)
Q Consensus 173 ~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~ 252 (537)
+++++++..|.+++.++.|+||.||+|||.+++|+|.|+||||.||||||||||+|+.+|||.++|||+||.||+||||+
T Consensus 214 ~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHE 293 (557)
T PLN02946 214 GRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHE 293 (557)
T ss_pred CCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCccc
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHH
Q 009329 253 NEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAV 332 (537)
Q Consensus 253 ~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l 332 (537)
|++||++|+.+.++++||+|+|||+++|+|||||+||+++++|++++|+++++|||+|++||+++++||++.|.++.+.+
T Consensus 294 NEiAQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l 373 (557)
T PLN02946 294 NEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERI 373 (557)
T ss_pred chHHHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchh
Q 009329 333 FYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 412 (537)
Q Consensus 333 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~ 412 (537)
.++++++.++...+............+..+...+..+.+.|.+||+||||||.|++. |+++++.+|++++.... ..
T Consensus 374 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~-l~~~vk~~N~~~~~~~~---~~ 449 (557)
T PLN02946 374 FYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAA-LSEPLKTINDLLHTRKG---KK 449 (557)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhhhccc---cc
Confidence 999999999877664321100000112223345667789999999999999999999 99999999998865310 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhcCCChhHhHHHHHHcH
Q 009329 413 QQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLT 492 (537)
Q Consensus 413 ~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~~Kdf~~AD~IRd~L~ 492 (537)
...+...+..+...+..++.+|||... ..+...++.........++.+++|+.||++|++||++|||++||+||++|.
T Consensus 450 -~~~~~~~l~~~~~~~~~~~~vLGl~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~ 527 (557)
T PLN02946 450 -QEKRLESLAALEKKIRDVLSVLGLMPT-SYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLA 527 (557)
T ss_pred -ccchHHHHHHHHHHHHHHHHHcCCCch-hhhhhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 001122344556677888899999642 111111111011111122335679999999999999999999999999999
Q ss_pred hCCCEEEecCCceEEEeCCcchh
Q 009329 493 RKGIALMDMGKETIWRPCVLVEQ 515 (537)
Q Consensus 493 ~~GI~l~D~~~Gt~W~~~~~~~~ 515 (537)
++||.|+|||+||+|++..|...
T Consensus 528 ~~Gi~l~Dt~~Gt~w~~~~~~~~ 550 (557)
T PLN02946 528 AVGIALMDSPDGTTWRPAIPLAL 550 (557)
T ss_pred HCCCEEEECCCCceEEEcCCCcc
Confidence 99999999999999999866543
No 3
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-121 Score=975.23 Aligned_cols=464 Identities=46% Similarity=0.769 Sum_probs=417.0
Q ss_pred cccCCCCCCceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhh
Q 009329 9 TVAAPKMDLTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD 88 (537)
Q Consensus 9 ~~~~~~~~~~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d 88 (537)
..|.++..++|+|||||||++|+|.|.++++|+||+||||||+++||||+|++|.+|+|+|+|++.||+|.||+|+||||
T Consensus 218 ~~~~~~~~~~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~D 297 (699)
T PRK14535 218 EQQRLIHNPMTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDID 297 (699)
T ss_pred hhhcccccCceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccc
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeee-ecceeecCCCCCC
Q 009329 89 DKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN 167 (537)
Q Consensus 89 ~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~-~~~v~f~~~~~~~ 167 (537)
|||+.+|+++|++|.+++++|++.|.++|+.|||.+++++|++|+|++.|+++|++|+++|+||++ .|+||||+++++.
T Consensus 298 DKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~ 377 (699)
T PRK14535 298 DKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAA 377 (699)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987 6799999999999
Q ss_pred CCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCc
Q 009329 168 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (537)
Q Consensus 168 yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~ 247 (537)
||+||+.+++++..|++++.+++|++|.||+|||++++|+|.|+||||.||||||||||+|+.++||.++|||+||.||+
T Consensus 378 YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLi 457 (699)
T PRK14535 378 YGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQ 457 (699)
T ss_pred cccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHhhhccCC----------------CCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhh
Q 009329 248 FPHHENEIAQSCAACQD----------------SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 248 f~H~~~~~a~~~a~~~~----------------~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~ 311 (537)
||||+|++||++|+.+. +|++||||+|||+++|+|||||+||+|+++|++++|+|+++|||+++
T Consensus 458 FPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLs 537 (699)
T PRK14535 458 FPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILR 537 (699)
T ss_pred CCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHc
Confidence 99999999999998665 48999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHH
Q 009329 312 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF 391 (537)
Q Consensus 312 ~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L 391 (537)
+||+++++||++.|.++.+.+.+++.++.++... . ..+...+..+.+.|.+||+||||+|.|++. |
T Consensus 538 shYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~-~------------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~-L 603 (699)
T PRK14535 538 AHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA-E------------FMLSENVNDYTRRFYAAMNDDFGTVEAVAV-L 603 (699)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhc-c------------chhhhhHHHHHHHHHHHHhhccChHHHHHH-H
Confidence 9999999999999999999999998887654210 0 011123456788999999999999999999 9
Q ss_pred HHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHH
Q 009329 392 QDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 471 (537)
Q Consensus 392 ~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~ 471 (537)
+++++.+|+... ..+...+..++.+|||... ...+.... . ....+..+++|+.||++
T Consensus 604 ~~lvk~iN~~~~------------------~~~~~~l~~~~~vLGl~~~-~~~~~~~~---~-~~~~~~~~~~i~~Li~~ 660 (699)
T PRK14535 604 FELAGEVNKTND------------------AQLAGCLKALGGIIGLLQR-DPTEFLQG---G-AASDGLSNEEIEDLIAR 660 (699)
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHhhcCCCcc-chhhhhhc---c-cccccCCHHHHHHHHHH
Confidence 999999997531 0122345567789998542 11111110 0 00112235679999999
Q ss_pred HHHHhcCCChhHhHHHHHHcHhCCCEEEecCCceEEEe
Q 009329 472 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 509 (537)
Q Consensus 472 R~~AR~~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~W~~ 509 (537)
|++||++|||++||+||++|.++||.|+|||+||+|++
T Consensus 661 R~~AR~~Kdfa~AD~IRd~L~~~GI~veDt~~Gt~W~~ 698 (699)
T PRK14535 661 RKQARADKNWAESDRIRDLLNEHKIILEDNAGGTTWRR 698 (699)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHCCCEEEEcCCCceEee
Confidence 99999999999999999999999999999999999986
No 4
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9e-119 Score=944.72 Aligned_cols=467 Identities=36% Similarity=0.608 Sum_probs=411.0
Q ss_pred ceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchh----------
Q 009329 18 TLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDV---------- 87 (537)
Q Consensus 18 ~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~---------- 87 (537)
+|+|||||||+||+|.|..+++|+||+||||||+++||||+|++|.+|+|+|+|+++||+|.||+||||+
T Consensus 2 ~l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ 81 (490)
T PRK14536 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSG 81 (490)
T ss_pred ceEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCC
Q 009329 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN 167 (537)
Q Consensus 88 d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~ 167 (537)
||||+.+|+++|++|.+++++|++.|.++|+.|||.+|+.+||+|+|++.|+++|++|+++|+||+++++||||+++||+
T Consensus 82 ddKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 161 (490)
T PRK14536 82 EDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPS 161 (490)
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred CCCCcchhchhhhcCCCccccccccCCccceeccccc--CC-CCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecc
Q 009329 168 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAK--AG-EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (537)
Q Consensus 168 yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~--~g-~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~ 244 (537)
||+||+.+++++..|.+++.+..|+||.||+|||..+ ++ +|+|+||||.||||||||||+|+.+|||.++|||+||+
T Consensus 162 YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~ 241 (490)
T PRK14536 162 YGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGV 241 (490)
T ss_pred hhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccc
Confidence 9999999999998899888888899999999999764 44 58999999999999999999999999999999999999
Q ss_pred cCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHh-cChhhHHHHHhhcCCCCCcccCHH
Q 009329 245 DLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVL 323 (537)
Q Consensus 245 Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs~~ 323 (537)
||+||||+|++||++|+.+.+|++||+|+||++++|+|||||+||+|+++|+++. |+++++|||+|++||+++++||++
T Consensus 242 DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e 321 (490)
T PRK14536 242 DHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWE 321 (490)
T ss_pred cCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHH
Confidence 9999999999999999988999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccC--C---C--CCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHH
Q 009329 324 QLDSASDAVFYIYQTLQDCEVALSPFQEH--G---K--TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK 396 (537)
Q Consensus 324 ~l~~~~~~l~~l~~~~~~~~~~l~~~~~~--~---~--~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~ 396 (537)
.|.++.+.+.+|++++.++.......... . . .......+...+..+.+.|.+||+||||||.|++. |+++++
T Consensus 322 ~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~-l~~~~~ 400 (490)
T PRK14536 322 ALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSE-LQKLVK 400 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHH-HHHHHH
Confidence 99999999999999988875433211000 0 0 00000112234566788999999999999999999 999999
Q ss_pred HHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHh
Q 009329 397 FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 476 (537)
Q Consensus 397 ~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR 476 (537)
.+|.- . ..+...+..++.+|||........... . . ......+++|+.||++|++||
T Consensus 401 ~~n~~----~---------------~~~~~~~~~~~~vLGl~~~~~~~~~~~---~-~-~~~~~~~~~i~~li~~R~~aR 456 (490)
T PRK14536 401 DTSVP----P---------------SLCLSVLQAMDTVLGLGLIQEATASLS---A-Q-VPAGPSEEEIGQLIEARAHAR 456 (490)
T ss_pred Hhhhh----H---------------HHHHHHHHHHHhhcCcccccchhhhhh---h-c-ccccCCHHHHHHHHHHHHHHH
Confidence 98851 0 113455677788999842101111000 0 0 001122457999999999999
Q ss_pred cCCChhHhHHHHHHcHhCCCEEEecCCceEEEe
Q 009329 477 KNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 509 (537)
Q Consensus 477 ~~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~W~~ 509 (537)
++|||++||+||++|.++||.|+|||+||+|++
T Consensus 457 ~~kdf~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~ 489 (490)
T PRK14536 457 QTKDFPLADEIRDKLKAEGIELEDTHLGTIWKR 489 (490)
T ss_pred HhCCHHHHHHHHHHHHHCCCEEEEcCCCceEEe
Confidence 999999999999999999999999999999986
No 5
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-116 Score=922.80 Aligned_cols=464 Identities=31% Similarity=0.510 Sum_probs=404.0
Q ss_pred ceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchh----------
Q 009329 18 TLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDV---------- 87 (537)
Q Consensus 18 ~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~---------- 87 (537)
+|+|||||||++|+|.|. ++|+||+||||||+++||||+|++|.+|+|+|+|++.||+|.||+||||+
T Consensus 2 ~l~lynTltr~ke~f~p~--~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~g 79 (481)
T PRK14534 2 LLKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDG 79 (481)
T ss_pred ceEEEEcCCCCeeecccC--CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCC
Confidence 599999999999999996 79999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCC
Q 009329 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN 167 (537)
Q Consensus 88 d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~ 167 (537)
||||+.+|+++|++|.+++++|++.|.++|+.|||.+++++|++|+|++.|+++|++|+++|+||+++++||||+.+++.
T Consensus 80 ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 159 (481)
T PRK14534 80 EDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKS 159 (481)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhchhhh--cCCCccccccccCCccceecccc---cCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEe
Q 009329 168 YGRLSGQRLENNR--AGERVAVDSRKRNPADFALWKAA---KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (537)
Q Consensus 168 yG~ls~~~l~~~~--~g~~~~~~~~k~~~~df~lwk~~---~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~ 242 (537)
||+||+.+++++. .|.+++++..|+||.||+|||.. ++++|+|++|||.||||||||||+|+.++||.++|||+|
T Consensus 160 YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~G 239 (481)
T PRK14534 160 YGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLG 239 (481)
T ss_pred hhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEec
Confidence 9999999999986 78888888889999999999975 788999999999999999999999999999999999999
Q ss_pred cccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHh-cChhhHHHHHhhcCCCCCcccC
Q 009329 243 GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYS 321 (537)
Q Consensus 243 G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs 321 (537)
|+||+||||+|++||++|+.+.++++||+|+||++++|+|||||+||+++++|++++ |+++++|||+|++||+++++||
T Consensus 240 G~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs 319 (481)
T PRK14534 240 GVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFT 319 (481)
T ss_pred ccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999989999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHH
Q 009329 322 VLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (537)
Q Consensus 322 ~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~ 401 (537)
++.|.++.+.+.++++++.++...+............+.........+.+.|.+||+||||+|.|++. |+++++.+|..
T Consensus 320 ~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~-l~~~~k~~n~~ 398 (481)
T PRK14534 320 FNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLAL-LWDIIKDDNLS 398 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHHh
Confidence 99999999999999988876643332100000000000000012235667999999999999999999 99999999974
Q ss_pred HhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhcCCCh
Q 009329 402 LNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDF 481 (537)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~~Kdf 481 (537)
. . . ... +...+..++. ||+... .. .... . .....+++|+.||++|++||++|||
T Consensus 399 ~---~----~-----~~~----~~~~~~~~~~-lg~~~~-~~----~~~~---~-~~~~~~~~i~~li~~R~~aR~~Kd~ 452 (481)
T PRK14534 399 F---L----S-----KLR----LAFKFDEVLS-LGLREE-IL----REIE---N-HRIVIDDNMKSLIEERRLAKCEKDF 452 (481)
T ss_pred h---h----h-----HHH----HHHHHHHHHh-CCCCcc-cc----hhhc---c-ccccCHHHHHHHHHHHHHHHHhCCh
Confidence 1 0 0 011 1234555555 887321 00 0000 0 0112356799999999999999999
Q ss_pred hHhHHHHHHcHhCCCEEEecCCceEEEeC
Q 009329 482 SKSDQIRADLTRKGIALMDMGKETIWRPC 510 (537)
Q Consensus 482 ~~AD~IRd~L~~~GI~l~D~~~Gt~W~~~ 510 (537)
++||+||++|.++||.|+|||+||+|++.
T Consensus 453 ~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~~ 481 (481)
T PRK14534 453 KRADEIREYFASKGFVLIDTEEGTKVKRG 481 (481)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCCEEEeC
Confidence 99999999999999999999999999863
No 6
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=5.4e-116 Score=958.93 Aligned_cols=490 Identities=37% Similarity=0.581 Sum_probs=431.5
Q ss_pred CCceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHH-HCCCceEEEcCcchhhHHHHHH
Q 009329 16 DLTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE-HLKCEVTYVRNFTDVDDKIIRR 94 (537)
Q Consensus 16 ~~~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~-~~G~~V~~v~~idd~d~ki~~~ 94 (537)
.++|+|||||||+|++|.|.++++|+||+||||||+.+||||||++|.+|+|+|+|+ ++||+|.||+|||||||||+.+
T Consensus 37 ~~~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~ 116 (651)
T PTZ00399 37 LTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKR 116 (651)
T ss_pred CCceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHH
Confidence 357999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHcCCC-hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCC----CCC
Q 009329 95 ANDLGEN-PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----NYG 169 (537)
Q Consensus 95 a~~~g~~-~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~----~yG 169 (537)
|++.|++ +.++|++|++.|.++|+.|||.+|++++|+|+|++.|+++|++|+++|+||+++|+|||++++|+ .||
T Consensus 117 A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg 196 (651)
T PTZ00399 117 AREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP 196 (651)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999997 899
Q ss_pred CCcc---hhchhhhcCCC-c-cccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecc
Q 009329 170 RLSG---QRLENNRAGER-V-AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (537)
Q Consensus 170 ~ls~---~~l~~~~~g~~-~-~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~ 244 (537)
+|++ .+++.+..|++ + +.+..|++|.||+|||.+++|+|.|+||||.||||||||||+|+..+||.++|||+||.
T Consensus 197 ~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~ 276 (651)
T PTZ00399 197 KLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGI 276 (651)
T ss_pred hhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCC
Confidence 9985 44455556765 5 44457999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCccchhhHHHhhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHH
Q 009329 245 DLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL 323 (537)
Q Consensus 245 Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~ 323 (537)
||+||||+|++||++|+++. +|++||+|+|||+++|+|||||+||+|+|+|+|+.|++|++|||||+.+|+++++||++
T Consensus 277 DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e 356 (651)
T PTZ00399 277 DLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDE 356 (651)
T ss_pred CCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHH
Confidence 99999999999999999886 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccc--CCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHH
Q 009329 324 QLDSASDAVFYIYQTLQDCEVALSPFQE--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (537)
Q Consensus 324 ~l~~~~~~l~~l~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~ 401 (537)
.+.++.+...++.+++.++.+.+..... .....+.+.++...+..+.+.|.++|+|+|++|.|+.. |++|++.+|+|
T Consensus 357 ~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~-L~eLv~~~N~y 435 (651)
T PTZ00399 357 SMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA-LQKLISATNTY 435 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHH
Confidence 9999999888888888887766543211 00112345778888999999999999899999999999 99999999999
Q ss_pred HhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHH-HHHHHHHHHhhhhccHHHHHHHHHHHHHHhc---
Q 009329 402 LNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV-LQQLKDKALKRAELTEEDVLQLIEERAAARK--- 477 (537)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~--- 477 (537)
++... ..++.++.++...|..++.||||.+. ...+ +. +... ........|+.|++.|+.+|+
T Consensus 436 i~~~~--------~~~~~ll~~v~~~l~~~l~ILGl~~~--~~m~~~~--~~~~--~~~~~~~~i~~l~~~R~~~R~~a~ 501 (651)
T PTZ00399 436 LNSGE--------QPSAPLLRSVAQYVTKILSIFGLVEG--SDGLGSQ--GQNS--TSENFKPLLEALLRFRDEVRDAAK 501 (651)
T ss_pred Hhccc--------cchHHHHHHHHHHHHHHHhcccCCcc--hhhcccc--cccc--chhhhHHHHHHHHHHHHHHHHHHH
Confidence 96311 12345567788899999999999653 1111 00 0000 001123568899999999993
Q ss_pred -C-----------CChhHhHHHHH-HcHhCCCEEEecCCc-eEEEeCCcchhhhcCC
Q 009329 478 -N-----------KDFSKSDQIRA-DLTRKGIALMDMGKE-TIWRPCVLVEQEQEAP 520 (537)
Q Consensus 478 -~-----------Kdf~~AD~IRd-~L~~~GI~l~D~~~G-t~W~~~~~~~~~~~~~ 520 (537)
+ |+|++||+||| .|.++||.|+|+++| |+|++.++.++.+|.+
T Consensus 502 ~~~~~~~~~~~~~~~~~~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~ 558 (651)
T PTZ00399 502 AEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKE 558 (651)
T ss_pred hccccccchhhhhhHHHHHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHH
Confidence 5 88999999999 599999999999999 7999999998666433
No 7
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.4e-114 Score=923.51 Aligned_cols=462 Identities=50% Similarity=0.854 Sum_probs=423.8
Q ss_pred ceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH
Q 009329 18 TLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (537)
Q Consensus 18 ~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~ 97 (537)
+|+|||||||++++|.|..+++|+||+|||||||++||||+|++|.+|+++|+||+.||+|.||+|+||+|+||+.+|++
T Consensus 2 ~l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~ 81 (463)
T PRK00260 2 MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANE 81 (463)
T ss_pred ceEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhch
Q 009329 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE 177 (537)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~ 177 (537)
+|++|.+++++|++.|.++|+.|||..++.++++|+|++.+++++++|+++|+||+++++||||++++++||+||+.+++
T Consensus 82 ~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~ 161 (463)
T PRK00260 82 EGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLD 161 (463)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHH
Confidence 99999999999999999999999997789999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHH
Q 009329 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (537)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~ 257 (537)
++..|.+++.+.+|++|.||+|||.+++|++.|++|||.||||||||||+|++++||.++|||+||+||+||||+|++||
T Consensus 162 ~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaq 241 (463)
T PRK00260 162 ELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQ 241 (463)
T ss_pred HHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHH
Confidence 99889999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Q 009329 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (537)
Q Consensus 258 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~ 337 (537)
++|+++.||+++|+|+|||+++|+|||||+||+|++.|++++|+||++|||+++++|+++++|+++.+.++.+.+.++++
T Consensus 242 s~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~~ 321 (463)
T PRK00260 242 SEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYN 321 (463)
T ss_pred HHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHH
Q 009329 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL 417 (537)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~ 417 (537)
++..+.. ...+.++...+..+.+.|.+||+||||+|.|++. |+++++.+|++++...
T Consensus 322 ~~~~~~~-----------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~-l~~lv~~~n~~~~~~~----------- 378 (463)
T PRK00260 322 ALAETAL-----------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAV-LFELAREINRALETKD----------- 378 (463)
T ss_pred HHHHhhh-----------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhhccc-----------
Confidence 8876641 1234567778888999999999889999999999 9999999999986531
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhcCCChhHhHHHHHHcHhCCCE
Q 009329 418 IESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497 (537)
Q Consensus 418 ~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~ 497 (537)
...+..+...|..++.+|||... . ..... .......+++|++|+++|++||++|||++||+|||+|.++||.
T Consensus 379 ~~~~~~~~~~~~~~~~ilG~~~~-~-~~~~~------~~~~~~~~~~~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~ 450 (463)
T PRK00260 379 KEAAAALAALLRALADVLGLEQD-E-EALFE------AAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIV 450 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCCch-h-hhhhh------cccccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcE
Confidence 11244566778888999999532 1 10000 0011234567999999999999999999999999999999999
Q ss_pred EEecCCceEEEeC
Q 009329 498 LMDMGKETIWRPC 510 (537)
Q Consensus 498 l~D~~~Gt~W~~~ 510 (537)
|+|+|+||+|++.
T Consensus 451 v~D~~~G~~w~~~ 463 (463)
T PRK00260 451 LEDTPDGTTWRRK 463 (463)
T ss_pred EEEcCCCceEEeC
Confidence 9999999999863
No 8
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=8e-114 Score=915.26 Aligned_cols=463 Identities=48% Similarity=0.804 Sum_probs=411.6
Q ss_pred eeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHc
Q 009329 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL 98 (537)
Q Consensus 19 l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~ 98 (537)
|+|||||||++|+|.|..+++|+||+|||||||++||||+|++|.+|+++|+||++||+|.||+|+||||+||+.+|+++
T Consensus 1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~ 80 (465)
T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN 80 (465)
T ss_pred CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeee-cceeecCCCCCCCCCCcchhch
Q 009329 99 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLE 177 (537)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~-~~v~f~~~~~~~yG~ls~~~l~ 177 (537)
|++|.+++++|.+.|.++|++|||.+++.++++|+|++.++++|++|+++|+||+++ ++||||+++++.||+||++.++
T Consensus 81 g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~ 160 (465)
T TIGR00435 81 GESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLD 160 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHH
Confidence 999999999999999999999999988888999999999999999999999999998 9999999999999999999999
Q ss_pred hhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHH
Q 009329 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (537)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~ 257 (537)
++..|.+++.+.+|+||.||+|||.+++|+++|++|||.||||||||||||++++||.++|||+||+||+||||+|++||
T Consensus 161 ~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aq 240 (465)
T TIGR00435 161 QLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240 (465)
T ss_pred HHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHH
Confidence 98889999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Q 009329 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (537)
Q Consensus 258 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~ 337 (537)
++|+++++|+++|+|+|||+++|+|||||+||+|+++|+++.|+++++|||+++++|+++++||++.+.++.+.+.+|++
T Consensus 241 s~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~ 320 (465)
T TIGR00435 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYK 320 (465)
T ss_pred HHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHH-HHHhhhcccCchhhhHH
Q 009329 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN-SSLNMLKKKQPKQQQLS 416 (537)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N-~~~~~~~~~~~~~~~~~ 416 (537)
++.++........ . ...........+.+.|.+||+||||||.|++. |+++++.+| ..++.
T Consensus 321 ~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~------------ 381 (465)
T TIGR00435 321 ALRVLDTTLAYSG----N--QSLNKFPDEKEFEARFVEAMDDDLNTANALAV-LFELAKSINLTFVSK------------ 381 (465)
T ss_pred HHHHHHhhhcccc----c--cccccchhHHHHHHHHHHHHhhccCHHHHHHH-HHHHHHHhhhhhcch------------
Confidence 9887754332110 0 00001112345678999999999999999999 999999999 43311
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhcCCChhHhHHHHHHcHhCCC
Q 009329 417 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGI 496 (537)
Q Consensus 417 ~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~~Kdf~~AD~IRd~L~~~GI 496 (537)
..+..+...+..++.+|||+.. ...+.. + ... ......+|++||++|++||++|||++||+||++|.++||
T Consensus 382 --~~~~~~~~~~~~l~~~lg~~~~-~~~~~~-~---~~~--~~~~~~~i~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi 452 (465)
T TIGR00435 382 --ADAALLIEHLIFLESRLGLLLG-LPSKPV-Q---AGS--NDDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGI 452 (465)
T ss_pred --HHHHHHHHHHHHHHHhcccCcc-ccchhc-c---ccc--ccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCC
Confidence 0123355667778889998521 010000 0 000 001124689999999999999999999999999999999
Q ss_pred EEEecCCceEEEe
Q 009329 497 ALMDMGKETIWRP 509 (537)
Q Consensus 497 ~l~D~~~Gt~W~~ 509 (537)
.|+|||+||+|++
T Consensus 453 ~~~D~~~gt~w~~ 465 (465)
T TIGR00435 453 VLEDTPQGTTWRR 465 (465)
T ss_pred EEEECCCCceeeC
Confidence 9999999999974
No 9
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-114 Score=870.91 Aligned_cols=482 Identities=44% Similarity=0.677 Sum_probs=407.0
Q ss_pred CCCCCceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHH-HCCCceEEEcCcchhhHHH
Q 009329 13 PKMDLTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE-HLKCEVTYVRNFTDVDDKI 91 (537)
Q Consensus 13 ~~~~~~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~-~~G~~V~~v~~idd~d~ki 91 (537)
.+..+.|+|||||||+||+|.|.++++|+||+||||||+..||||||+||.+|+|+|+|+ ++||+|.||+||||+||||
T Consensus 29 ~~~~~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKI 108 (586)
T KOG2007|consen 29 AGQPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKI 108 (586)
T ss_pred CCCCCeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHH
Confidence 455678999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHH--cCC---ChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCC
Q 009329 92 IRRAND--LGE---NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 166 (537)
Q Consensus 92 ~~~a~~--~g~---~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~ 166 (537)
|.||++ .+. ++.+.-..|+++|.+||++|||.+|++.+|+|+|+++|+.+|++++++|+||..+|+||||+.+++
T Consensus 109 I~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~ 188 (586)
T KOG2007|consen 109 IKRARKEEMGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP 188 (586)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc
Confidence 999972 334 444443368899999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEeccc
Q 009329 167 -NYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (537)
Q Consensus 167 -~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~D 245 (537)
.||+|+++. +.+..|+.+..+..|++|.||+|||++|+|+|+|++|||.||||||||||+|+..+||..+|||+||.|
T Consensus 189 ~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~D 267 (586)
T KOG2007|consen 189 HSYGKLVGQR-KNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGID 267 (586)
T ss_pred chhhhhcCch-hhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCccc
Confidence 599999744 667778877777889999999999999999999999999999999999999999999999999999999
Q ss_pred CcCccchhhHHHhhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHH
Q 009329 246 LIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQ 324 (537)
Q Consensus 246 l~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~ 324 (537)
|.||||+||+||++|++.. +|++||+|+|||+++|+|||||++||||++|+|+.|+|+++|++||+++|+++++||.+.
T Consensus 268 L~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~ 347 (586)
T KOG2007|consen 268 LAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDST 347 (586)
T ss_pred ccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHH
Confidence 9999999999999999864 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhh
Q 009329 325 LDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNM 404 (537)
Q Consensus 325 l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~ 404 (537)
|..+.+....+.+++..+..+.+.........+.+.++...+....++|+.|++|+++||.++.. +.+++...|.|+..
T Consensus 348 m~~a~q~e~~~~~ff~~~~al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~-~~~lvs~~N~~i~~ 426 (586)
T KOG2007|consen 348 MEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA-IRELVSQGNAYIRE 426 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH-HHHHHhhhhHHHHH
Confidence 98776543333333333333333221112234456788889999999999999999999999999 99999999999976
Q ss_pred hcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHH----HHHHHhcCCC
Q 009329 405 LKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIE----ERAAARKNKD 480 (537)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~----~R~~AR~~Kd 480 (537)
.. ......++.++...|..++.++|+......+.+ . .+ .....++.|.+ +|+.|++.+-
T Consensus 427 ~~-------~~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~--------~-e~-~~m~~v~~L~~fr~~vRe~a~~~~~ 489 (586)
T KOG2007|consen 427 SG-------ERPNSALLKAIASYITKLLKIFGLSEGKGQQYV--------L-EA-TVMPYVQSLSEFREKVREVAREKKV 489 (586)
T ss_pred hc-------cccchHHHHHHHHHHHHHHHHhCCCcccccccc--------c-cc-chhHHHHHHHHHHHHHHHHHHhcch
Confidence 54 112346678889999999999998642011000 0 00 01123344554 4555554443
Q ss_pred ---hhHhHHHHHH-cHhCCCEEEecCCceEEEeCCcch
Q 009329 481 ---FSKSDQIRAD-LTRKGIALMDMGKETIWRPCVLVE 514 (537)
Q Consensus 481 ---f~~AD~IRd~-L~~~GI~l~D~~~Gt~W~~~~~~~ 514 (537)
.++||.|||. |.++|+.|+|.+ |++|.+.+-.+
T Consensus 490 ~~iL~l~d~lR~~~l~~~g~~led~~-g~~lvk~v~~e 526 (586)
T KOG2007|consen 490 PEILELCDTLRDSDLLELGVRLEDRK-GSTLVKAVDRE 526 (586)
T ss_pred HHHHHHhHHHHHhhHHHhhhHHHhCC-chHHHHHhhhH
Confidence 5899999987 999999999999 88887664443
No 10
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=5.8e-104 Score=813.16 Aligned_cols=368 Identities=36% Similarity=0.619 Sum_probs=343.4
Q ss_pred CCCCCCceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHH
Q 009329 12 APKMDLTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI 91 (537)
Q Consensus 12 ~~~~~~~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki 91 (537)
.+...++|+|||||||++|+|.| +++|+||+||||||+++||||+|++|.+|+++|+||+.||+|.||+|+|||||||
T Consensus 11 ~~~~~~~l~lyntlt~~~~~f~p--~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKI 88 (411)
T TIGR03447 11 LPGTGPPLRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPL 88 (411)
T ss_pred CCCCCCceEEEECCCCCeeeccC--CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHH
Confidence 34456789999999999999999 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeec----ceeecCCCCCC
Q 009329 92 IRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPN 167 (537)
Q Consensus 92 ~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~----~v~f~~~~~~~ 167 (537)
+.+|+++|++|++++++|+..|.++|+.|||.+++.++|+|+|++.|+++|++|+++|+||++++ +|||+++++++
T Consensus 89 i~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~ 168 (411)
T TIGR03447 89 FERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQ 168 (411)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhc
Confidence 99999999999999999999999999999999899999999999999999999999999999876 89999999999
Q ss_pred CCCCcchhchhhhc--CCC-ccccc-cccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEec
Q 009329 168 YGRLSGQRLENNRA--GER-VAVDS-RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (537)
Q Consensus 168 yG~ls~~~l~~~~~--g~~-~~~~~-~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G 243 (537)
||+||+.+++++.. +.+ ++.+. .|+||.||+|||.+++|+|.|+||||.||||||||||+|+.++||.++|||+||
T Consensus 169 YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG 248 (411)
T TIGR03447 169 FGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGG 248 (411)
T ss_pred cccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCc
Confidence 99999999998875 454 66644 599999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCccchhhHHHhhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHhHHHHh-cChhhHHHHHhhcCCCCCcccC
Q 009329 244 IDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYS 321 (537)
Q Consensus 244 ~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs 321 (537)
.||+||||+|++||++|+.++ +|+++|+|+|+|+++|+|||||+||+|+++|+++. ++|+++|||++++||+++++||
T Consensus 249 ~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs 328 (411)
T TIGR03447 249 SDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWT 328 (411)
T ss_pred ccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccC
Confidence 999999999999999999887 99999999999999999999999999999999986 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHH
Q 009329 322 VLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (537)
Q Consensus 322 ~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~ 401 (537)
++.|.++.+.+.+|++++.++. . . .+..+...|.+||+||||+|.|++. |+++++.+|.-
T Consensus 329 ~e~l~~a~~~l~rl~~~~~~~~------------~---~----~~~~~~~~~~~al~dDln~p~a~~~-l~~~~~~~n~~ 388 (411)
T TIGR03447 329 DAVLAEAEARLARWRAALAATD------------A---P----DATDLIARLRQHLANDLDTPAALAA-VDNWAAAALSS 388 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc------------c---c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHhc
Confidence 9999999999998888775321 0 0 1234567899999999999999999 99999988863
No 11
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=3.9e-100 Score=747.03 Aligned_cols=299 Identities=61% Similarity=1.058 Sum_probs=259.6
Q ss_pred cccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHH
Q 009329 32 FTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (537)
Q Consensus 32 f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~ 111 (537)
|+|+++++|+||+||||||+.+||||+|++|.+|+|+|+|+..||+|.||+||||+|||||.+|+++|+++.+++++|++
T Consensus 1 F~p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~ 80 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEE 80 (300)
T ss_dssp ---SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CcCCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeee-cceeecCCCCCCCCCCcchhchhhhcCCCcccccc
Q 009329 112 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSR 190 (537)
Q Consensus 112 ~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~-~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~ 190 (537)
+|.++|++|||.+|+.+||+|+||++|+++|++|+++|+||+++ |+|||+++++++||+||+.+++++..|.+++.+..
T Consensus 81 ~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~ 160 (300)
T PF01406_consen 81 EFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYE 160 (300)
T ss_dssp HHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TT
T ss_pred HHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccc
Confidence 99999999999999999999999999999999999999999997 99999999999999999999999998988888888
Q ss_pred ccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEE
Q 009329 191 KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (537)
Q Consensus 191 k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~ 270 (537)
|++|.||+|||.+++|++.|++|||.||||||||||+|+.++||.++|||+||.||+||||+|++||++|+++++|++||
T Consensus 161 K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W 240 (300)
T PF01406_consen 161 KRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYW 240 (300)
T ss_dssp SSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEE
T ss_pred cCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHH
Q 009329 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 330 (537)
Q Consensus 271 ~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~ 330 (537)
||+|||+++|+|||||+||+++++|++++|+|+++||+||++||+++++||++.|+++.|
T Consensus 241 ~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 241 MHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp EEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999875
No 12
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-98 Score=771.05 Aligned_cols=354 Identities=36% Similarity=0.607 Sum_probs=329.3
Q ss_pred ccCCCC-cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHH
Q 009329 33 TPIVPG-KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (537)
Q Consensus 33 ~p~~~~-~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~ 111 (537)
+|+.|| +|+||+||||||+++||||+|++|.+|+++|+||++||+|.||+|+|||||||+.+|+++|++|++++++|++
T Consensus 2 ~p~~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~ 81 (384)
T PRK12418 2 RPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIA 81 (384)
T ss_pred cCCCCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 577888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeec----ceeecCCCCCCCCCCcchhchhhhc--CCC-
Q 009329 112 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRLENNRA--GER- 184 (537)
Q Consensus 112 ~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~----~v~f~~~~~~~yG~ls~~~l~~~~~--g~~- 184 (537)
.|.++|+.|||.+++.+||+|+|++.|+++|++|+++|+||++++ +|||++++++.||+||+.+++++.. +.+
T Consensus 82 ~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~ 161 (384)
T PRK12418 82 LFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERG 161 (384)
T ss_pred HHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccc
Confidence 999999999997789999999999999999999999999999988 8999999999999999999998875 555
Q ss_pred ccccc-cccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhccC
Q 009329 185 VAVDS-RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ 263 (537)
Q Consensus 185 ~~~~~-~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~ 263 (537)
++.+. .|+||.||+|||.+++|+|.|+||||.||||||||||+|+.++||.++|||+||.||+||||+|++||++|+.+
T Consensus 162 ~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g 241 (384)
T PRK12418 162 GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATG 241 (384)
T ss_pred cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcC
Confidence 45533 59999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCceEEEEeeeeeeCCccccccCCCcccHhHHHHh-cChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Q 009329 264 D-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQD 341 (537)
Q Consensus 264 ~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~ 341 (537)
+ +|+++|+|+|+|.++|+|||||+||+|++.++++. ++|+++|||+++++|+++++||++.|.++.+.+.++++++.+
T Consensus 242 ~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~ 321 (384)
T PRK12418 242 ERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAAL 321 (384)
T ss_pred CCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence 6 89999999999999999999999999999999874 888899999999999999999999999999999988887644
Q ss_pred HHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhc
Q 009329 342 CEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (537)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~ 406 (537)
.. . . .+.++.+.|.+||+||||+|.|++. |+++++.+|.|....+
T Consensus 322 ~~------------~---~----~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 322 PA------------G---P----DAADVVARVRAALADDLDTPGALAA-VDGWATDALEGGGDDA 366 (384)
T ss_pred cc------------c---c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHhccCCCc
Confidence 20 0 0 2345678999999999999999999 9999999999985544
No 13
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=9.1e-64 Score=478.62 Aligned_cols=213 Identities=57% Similarity=1.004 Sum_probs=209.1
Q ss_pred eeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcC
Q 009329 20 KIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLG 99 (537)
Q Consensus 20 ~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g 99 (537)
+|||||||++++|.|..++++++|+|||||||++||||+|++|.+|+++||+|++|++|.|++|+||+|+||+.+|+++|
T Consensus 1 ~~~~t~~~~~~~~~p~~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g 80 (213)
T cd00672 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEG 80 (213)
T ss_pred CcccCCCCceeeeecCCCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhh
Q 009329 100 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENN 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~ 179 (537)
++|++++++|++.|.++++.|||++|+.++|+
T Consensus 81 ~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt------------------------------------------------ 112 (213)
T cd00672 81 LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV------------------------------------------------ 112 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee------------------------------------------------
Confidence 99999999999999999999999988999998
Q ss_pred hcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhh
Q 009329 180 RAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259 (537)
Q Consensus 180 ~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~ 259 (537)
||||||+|+.++||.++|||+||+||+||||+|+++|+.
T Consensus 113 -----------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 -----------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred -----------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccC
Q 009329 260 AACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 321 (537)
Q Consensus 260 a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs 321 (537)
|+.+.+++++|+|+|+|.++|+|||||+||+|++.|++++|++|++|||+++.+|+++++||
T Consensus 152 a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 152 AATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 98888899999999999999999999999999999999999999999999999999999996
No 14
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-61 Score=512.84 Aligned_cols=406 Identities=20% Similarity=0.212 Sum_probs=326.3
Q ss_pred ceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009329 40 VGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 40 v~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
.++|+++|.|| |++||||++++|.+|+++||+|++|++|.||+|+|+||+||..+|+++|++|++++++|+..|.+++
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~ 84 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELF 84 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 46788887777 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCCCC-------------C
Q 009329 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYG-------------R 170 (537)
Q Consensus 118 ~~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~yG-------------~ 170 (537)
+.|||+ +|.|.||| +|.+.+++++++|.++|++|.++..++||+++ ||.|| +
T Consensus 85 ~~l~Is-fD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~ 163 (558)
T COG0143 85 KALNIS-FDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGR 163 (558)
T ss_pred HHhCCc-ccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccC
Confidence 999999 68999998 79999999999999999999999999999985 66666 2
Q ss_pred -Ccchhchhh---hcCCCccccc------------------cccCCccceecccc--------cCC----CCcc-ccCCC
Q 009329 171 -LSGQRLENN---RAGERVAVDS------------------RKRNPADFALWKAA--------KAG----EPSW-DSPWG 215 (537)
Q Consensus 171 -ls~~~l~~~---~~g~~~~~~~------------------~k~~~~df~lwk~~--------~~g----~~~w-~~~wG 215 (537)
+++.++... .+|.++++.. ++.+| ||...... +.| .+++ +..||
T Consensus 164 ~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 164 TLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred cCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 444443222 2455543221 23344 55332211 123 4678 67999
Q ss_pred CCCCc--------hhhhhHHH---------------HHhhcCC--CeeEEEecccCcCccchhhHHHhhhccCCCCceEE
Q 009329 216 PGRPG--------WHIECSAM---------------SAHYLSS--KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (537)
Q Consensus 216 ~g~Pg--------Whiecs~m---------------~~~~~g~--~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~ 270 (537)
++.|| |+.+...+ ..++|.. .-.+|++|+||++||.++|||++++++.+.|.++
T Consensus 243 ipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i- 321 (558)
T COG0143 243 IPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRI- 321 (558)
T ss_pred ccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEE-
Confidence 99997 87764322 1234422 2449999999999999999999999988777777
Q ss_pred EEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcC
Q 009329 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALS 347 (537)
Q Consensus 271 ~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~ 347 (537)
+.|||++++|+|||||+||+|++.++++.|++|++||||++. +..+|.+||++.+.+..|. .+.+.|.++|..+++.
T Consensus 322 ~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~ 401 (558)
T COG0143 322 FAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFIN 401 (558)
T ss_pred EeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999997 9999999999999999875 4455566667777665
Q ss_pred ccccCCCC------CCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhh-hHHHHH-
Q 009329 348 PFQEHGKT------ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIE- 419 (537)
Q Consensus 348 ~~~~~~~~------~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~-~~~~~~- 419 (537)
+...+..+ .+.+++++..+..+...+.++| +.+.++.|+.. +++|++..|+|++..+||.+.++ .+.++.
T Consensus 402 k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~-i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~ 479 (558)
T COG0143 402 KYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEE-IMALASRANKYIDEQAPWKLAKEDKRERLAT 479 (558)
T ss_pred hccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHhhcCCCchhhccCcHHHHHH
Confidence 55432211 1345678888999999999999 99999999999 99999999999999999987543 234444
Q ss_pred HHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 420 SLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 420 ~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+..+++.++.+..+|. ++|. ++++++.+++
T Consensus 480 vl~~~~~~~r~la~ll~P~mP~-~a~ki~~~L~ 511 (558)
T COG0143 480 VLYLALELVRVLAILLYPFMPE-TAEKIWDQLG 511 (558)
T ss_pred HHHHHHHHHHHHHHHhcCcCcc-hHHHHHHHhC
Confidence 45566666776666664 8887 6777777664
No 15
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.8e-60 Score=513.51 Aligned_cols=397 Identities=21% Similarity=0.250 Sum_probs=310.0
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009329 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 39 ~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
+..|.+++|||||++||||+|+++.+|+++|++|++|++|.||+|+||+|+||+.+|+++|+++.++|++|...|.++|+
T Consensus 2 ~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 81 (511)
T PRK11893 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWE 81 (511)
T ss_pred CEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeecceeecCCC---------------CCCCCC-----------
Q 009329 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------------SPNYGR----------- 170 (537)
Q Consensus 119 ~l~i~~~~~~~r~s~--~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~---------------~~~yG~----------- 170 (537)
.|||. +|.++++++ |++.+++++.+|.++|++|++++++|||+.+ |..||.
T Consensus 82 ~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f 160 (511)
T PRK11893 82 ALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYF 160 (511)
T ss_pred HhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEE
Confidence 99998 677888774 9999999999999999999999999999986 444553
Q ss_pred --Ccc--hhchhhhcC--CCccccc--------cccCCccceecccccCCCCccccCCCCCCCc--------hhh-----
Q 009329 171 --LSG--QRLENNRAG--ERVAVDS--------RKRNPADFALWKAAKAGEPSWDSPWGPGRPG--------WHI----- 223 (537)
Q Consensus 171 --ls~--~~l~~~~~g--~~~~~~~--------~k~~~~df~lwk~~~~g~~~w~~~wG~g~Pg--------Whi----- 223 (537)
++. ..+.+...+ .++..+. .+.+..||++|+. +..||.+.|+ |+.
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~--------~~~WGipiP~~~~~~~~vWfda~~~y 232 (511)
T PRK11893 161 FRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRT--------NFDWGIPVPGDPKHVIYVWFDALTNY 232 (511)
T ss_pred EEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCC--------CCCCCccCCCCCCceEEEEecCcHHH
Confidence 111 112221111 1111111 1234557766662 3356666664 432
Q ss_pred --------hhHHH---HHhhcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCccc
Q 009329 224 --------ECSAM---SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFT 292 (537)
Q Consensus 224 --------ecs~m---~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~ 292 (537)
+|++| ...+| +.|+|++|+|++||||++++||+.+++.+ +++.|+|||||+++|+|||||+||+|+
T Consensus 233 ~s~~~~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~~~~-~p~~~~~~g~v~~~G~KMSKS~GN~i~ 309 (511)
T PRK11893 233 LTALGYPDDEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAAGLP-LPKRVFAHGFLTLDGEKMSKSLGNVID 309 (511)
T ss_pred HhHhccccccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhCCCC-CCCEEEeeccEEECCeeecccCCcEEc
Confidence 45555 23345 67999999999999999999999998544 447889999999999999999999999
Q ss_pred HhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCCCCCChHHHH
Q 009329 293 IRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPAAED 364 (537)
Q Consensus 293 ~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~~~~l~~ 364 (537)
+.|++++||+|++|||+++. +++++++||++.+..+.+. ...+++.++|+.+++.+.... ....+.+++++.
T Consensus 310 ~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 389 (511)
T PRK11893 310 PFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLE 389 (511)
T ss_pred HHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHH
Confidence 99999999999999999997 8899999999999876653 345667666666554332110 111344678888
Q ss_pred HHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhh-hHHHHHHHHHHHHHHHHHHhhcc-cCCCCC
Q 009329 365 CINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIESLRKIENEVKEVLRILG-LLPPGA 442 (537)
Q Consensus 365 ~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~ 442 (537)
.+.++.+.+.++| ++++++.|+.. |++|++.+|+|++..++|...+. .......+..+...++.+..+|. |+|. .
T Consensus 390 ~l~~~~~~v~~~~-~~~~~~~a~~~-l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~-~ 466 (511)
T PRK11893 390 AAAALLERVRAAM-DNLAFDKALEA-ILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPE-L 466 (511)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccch-H
Confidence 9999999999999 99999999999 99999999999999999864322 22223334555566666666774 7777 6
Q ss_pred hHHHHHHH
Q 009329 443 YSEVLQQL 450 (537)
Q Consensus 443 ~~~~~~~~ 450 (537)
++++|+.+
T Consensus 467 ae~i~~~L 474 (511)
T PRK11893 467 AAKILDQL 474 (511)
T ss_pred HHHHHHHh
Confidence 77777665
No 16
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=8.4e-57 Score=489.11 Aligned_cols=401 Identities=18% Similarity=0.181 Sum_probs=305.0
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009329 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
.+++++|.|| |++||||+++++.+|+++||+|++|++|.|++|+||||+||+.+|.++|++|.++|++|++.|.+.++
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 4677776666 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhch----hhhcCCCccccc---
Q 009329 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE----NNRAGERVAVDS--- 189 (537)
Q Consensus 119 ~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~----~~~~g~~~~~~~--- 189 (537)
.|||. +|.++|+| .|...++++|.+|.++|++|+.+..+|||+++- .|. ...++. ...+|.+++..+
T Consensus 150 ~l~I~-~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce-~f~--~~~~l~~~~~~~~~~~~~~~~~e~~ 225 (616)
T PLN02224 150 DLDIA-YDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCE-EYK--DEKELLENNCCPVHQMPCVARKEDN 225 (616)
T ss_pred HcCCC-CCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCC-CCC--CHHHHcCCCCCCCCCCcceEEecce
Confidence 99997 68999988 599999999999999999999999999998742 221 222221 111344432211
Q ss_pred ---------------cccCCccceecc----------c--ccCCCCcccc-CCCCCCCc--------hhhhhHHHHH--h
Q 009329 190 ---------------RKRNPADFALWK----------A--AKAGEPSWDS-PWGPGRPG--------WHIECSAMSA--H 231 (537)
Q Consensus 190 ---------------~k~~~~df~lwk----------~--~~~g~~~w~~-~wG~g~Pg--------Whiecs~m~~--~ 231 (537)
+..+| +|..+. . ..+-.++++. +||++.|+ |+.+...+.. .
T Consensus 226 ~ff~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~ 304 (616)
T PLN02224 226 YFFALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALT 304 (616)
T ss_pred EEEEhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhc
Confidence 11222 222111 1 1122467864 89999996 8877543321 0
Q ss_pred ------------hcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHh
Q 009329 232 ------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 232 ------------~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~ 299 (537)
.++++.++|++|+|+++||+++|||++.+++...|.++ ++|||++++|+|||||+||+|++.|+++.
T Consensus 305 ~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i-~~~g~l~~eG~KMSKS~GN~i~p~e~l~~ 383 (616)
T PLN02224 305 EDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMV-FGHGFLTKDGMKMGKSLGNTLEPFELVQK 383 (616)
T ss_pred ccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEE-EecccEecCCccccccCCccCCHHHHHHH
Confidence 12357799999999999999999999988764444444 77799999999999999999999999999
Q ss_pred cChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCC-----CCCCCChHHHHHHHHHHH
Q 009329 300 YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHG-----KTARINPAAEDCINKLRD 371 (537)
Q Consensus 300 ~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~ 371 (537)
||+|++||||++. ++.++.+|+++.+.+..|. +..+.+.+.|+..++.+..... .....+.++.+.+.++.+
T Consensus 384 ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~ 463 (616)
T PLN02224 384 FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVE 463 (616)
T ss_pred cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHH
Confidence 9999999999997 8899999999998766542 3333444444433332221111 012345789999999999
Q ss_pred HHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhh---hH-HHHHHHHHHHHHHHHHHhhc-ccCCCCChHHH
Q 009329 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ---QL-SLIESLRKIENEVKEVLRIL-GLLPPGAYSEV 446 (537)
Q Consensus 372 ~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~---~~-~~~~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~ 446 (537)
.+.++| ++++++.|+.. +++|++..|+|++..+||++.+. .. .....+..+...|+.+..+| .|+|. .++++
T Consensus 464 ~v~~~m-e~~~~~~Al~~-i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~-~Ae~I 540 (616)
T PLN02224 464 KAQTNY-ENLSLSSACEA-VLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPC-LSLRI 540 (616)
T ss_pred HHHHHH-HhccHHHHHHH-HHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHH
Confidence 999999 99999999999 99999999999999999965221 11 12233445666777777676 47787 67777
Q ss_pred HHHH
Q 009329 447 LQQL 450 (537)
Q Consensus 447 ~~~~ 450 (537)
|+++
T Consensus 541 ~~~L 544 (616)
T PLN02224 541 YSQL 544 (616)
T ss_pred HHHh
Confidence 7765
No 17
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=1.2e-55 Score=493.33 Aligned_cols=410 Identities=14% Similarity=0.117 Sum_probs=319.7
Q ss_pred CCcceEEEeCCCCC--CCCCcchhh-HHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 009329 37 PGKVGMYVCGVTAY--DLSHLGHAR-AAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113 (537)
Q Consensus 37 ~~~v~~y~~gPt~y--g~~HiGh~r-~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~ 113 (537)
+++-++|+++|.|| |++||||++ ++|.+|+++||+|++|++|.|++|+|+||.+|..+|.++|++|++++++|++.|
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~ 93 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIH 93 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45667888887777 999999999 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCC--CCC-------
Q 009329 114 LVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPN--YGR------- 170 (537)
Q Consensus 114 ~~~l~~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~--yG~------- 170 (537)
.+.+++|||+ +|.|.|++ +|...++++|.+|.++|++|++...++||+++ ||. ||.
T Consensus 94 ~~~~~~l~i~-~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~ 172 (801)
T PLN02610 94 KEVYDWFDIS-FDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQ 172 (801)
T ss_pred HHHHHHcCCc-cccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccch
Confidence 9999999999 58888888 79999999999999999999999999999884 777 542
Q ss_pred -------Ccchhchhhh---cCCCccccc------------------cccCCc--cc-----e---eccc--ccCCCCcc
Q 009329 171 -------LSGQRLENNR---AGERVAVDS------------------RKRNPA--DF-----A---LWKA--AKAGEPSW 210 (537)
Q Consensus 171 -------ls~~~l~~~~---~g~~~~~~~------------------~k~~~~--df-----~---lwk~--~~~g~~~w 210 (537)
+.+.++.+.. +|..++... .+.++. .+ . -|-. .++-.+++
T Consensus 173 Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR 252 (801)
T PLN02610 173 CEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITR 252 (801)
T ss_pred hhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceee
Confidence 2222333221 344432211 011110 00 0 0211 12234678
Q ss_pred ccCCCCCCCc----------hhhhhHHHH----------HhhcCCCee---EEEecccCcCccchhhHHHhhhccCC--C
Q 009329 211 DSPWGPGRPG----------WHIECSAMS----------AHYLSSKFD---IHGGGIDLIFPHHENEIAQSCAACQD--S 265 (537)
Q Consensus 211 ~~~wG~g~Pg----------Whiecs~m~----------~~~~g~~~d---ih~~G~Dl~f~H~~~~~a~~~a~~~~--~ 265 (537)
+.+||+++|. |+.+...+. ..+|..+-+ +|++|+||++||.++|||+++|++.+ .
T Consensus 253 ~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~ 332 (801)
T PLN02610 253 DLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTM 332 (801)
T ss_pred ecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCC
Confidence 8899999982 877643221 234543223 89999999999999999999998754 4
Q ss_pred CceEEEEeeeeeeCCccccccCCCcccHhHHHHh-cChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHHH
Q 009329 266 NVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQD 341 (537)
Q Consensus 266 ~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~ 341 (537)
|.++ +.|||++++|+|||||+||+|++.++++. |++|++||||++. +..+|.+||++.+.+..|. ++.|.|.+.|
T Consensus 333 p~~i-~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R 411 (801)
T PLN02610 333 MKTI-SVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINR 411 (801)
T ss_pred CCEE-EeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 66799999999999999999999999995 9999999999997 9999999999999988775 4555666666
Q ss_pred HHHhcC----ccccCCC-------CCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCc
Q 009329 342 CEVALS----PFQEHGK-------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410 (537)
Q Consensus 342 ~~~~l~----~~~~~~~-------~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~ 410 (537)
+.+++. +...+.. ..+.+.++++.+.++.+.+.++| ++++++.|+.. +++|++.+|+|++..+||..
T Consensus 412 ~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~-I~~l~~~~NkYIe~~kPW~L 489 (801)
T PLN02610 412 VLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKT-AMSISSEGNAYLQESQFWKL 489 (801)
T ss_pred HHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhh
Confidence 655554 2222111 12346789999999999999999 99999999999 99999999999999999986
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHH
Q 009329 411 KQQQ-LSLIESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQLK 451 (537)
Q Consensus 411 ~~~~-~~~~~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~~ 451 (537)
.+.. ......+..+++.|+.+..+| .|+|. .+++++++++
T Consensus 490 ~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~-~aeeI~~~Lg 531 (801)
T PLN02610 490 YKEDKPSCAIVVKTSVGLVYLLACLLEPFMPS-FSKEVLKQLN 531 (801)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHhCcccH-HHHHHHHHhC
Confidence 3322 223334556667788777777 58887 7888888775
No 18
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-55 Score=491.99 Aligned_cols=404 Identities=19% Similarity=0.181 Sum_probs=311.4
Q ss_pred EEEeCC--CCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009329 42 MYVCGV--TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 42 ~y~~gP--t~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
+|+++| +|+|.+||||+|+++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|++++++|++.|.++|+.
T Consensus 4 ~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 83 (673)
T PRK00133 4 ILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAG 83 (673)
T ss_pred EEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 455554 556999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCCCCCC-c------------
Q 009329 120 LQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL-S------------ 172 (537)
Q Consensus 120 l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~yG~l-s------------ 172 (537)
|||. +|.++|++ +|++.++++|.+|+++|++|+.++.+|||+.+ ||.||.. +
T Consensus 84 l~i~-~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~ 162 (673)
T PRK00133 84 FGIS-FDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATY 162 (673)
T ss_pred hCCC-CCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccC
Confidence 9998 58888887 69999999999999999999999999999884 6777654 1
Q ss_pred -chhchhh---hcCCCcccccc------------------ccCCccc--------eecccc--cCCCCccccCC-CCCCC
Q 009329 173 -GQRLENN---RAGERVAVDSR------------------KRNPADF--------ALWKAA--KAGEPSWDSPW-GPGRP 219 (537)
Q Consensus 173 -~~~l~~~---~~g~~~~~~~~------------------k~~~~df--------~lwk~~--~~g~~~w~~~w-G~g~P 219 (537)
+.++.+. .+|..++.... .+++ .+ .-|-.. .+-.++++..| |++.|
T Consensus 163 ~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP 241 (673)
T PRK00133 163 SPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-ELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIP 241 (673)
T ss_pred ChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhCCCcccceeeeCCccceECC
Confidence 1112111 13444332110 1111 00 001100 12235777889 99999
Q ss_pred c--------hhhhhHHH---------------HHhhcC-C--CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEe
Q 009329 220 G--------WHIECSAM---------------SAHYLS-S--KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHN 273 (537)
Q Consensus 220 g--------Whiecs~m---------------~~~~~g-~--~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~ 273 (537)
| |+.+...+ ...+|. . +..+|+.|+||++||.++|||++.+.+..+|.++ +.|
T Consensus 242 ~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v-~~h 320 (673)
T PRK00133 242 GAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNV-FAH 320 (673)
T ss_pred CCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCCCEE-eee
Confidence 6 76653211 012341 1 2459999999999999999999999776666666 667
Q ss_pred eeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCC-CCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCcc
Q 009329 274 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPF 349 (537)
Q Consensus 274 g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~ 349 (537)
|||+++|+|||||+||+|+|.|+++.||+|++||||++. +.. +|.+|+++.+....+. +.++.+.+.|+.+++.+.
T Consensus 321 g~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~ 400 (673)
T PRK00133 321 GFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKR 400 (673)
T ss_pred ccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987 777 8999999998765443 455666666666555432
Q ss_pred ccCC-CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhh-HHHHHHHHHHHHH
Q 009329 350 QEHG-KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENE 427 (537)
Q Consensus 350 ~~~~-~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 427 (537)
.... ...+.+.+++..+.++...+.++| ++++++.|+.. +++|+..+|+|++..++|...+.. ......+..+...
T Consensus 401 ~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~ 478 (673)
T PRK00133 401 FDGKLPDALADPELLEEFEAAAEKIAEAY-EAREFRKALRE-IMALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNL 478 (673)
T ss_pred cCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHH
Confidence 2111 123457899999999999999999 89999999999 999999999999999999753222 2223345556677
Q ss_pred HHHHHhhc-ccCCCCChHHHHHHHH
Q 009329 428 VKEVLRIL-GLLPPGAYSEVLQQLK 451 (537)
Q Consensus 428 l~~~l~vL-Gi~~~~~~~~~~~~~~ 451 (537)
++.++.+| .|+|. .++++|++++
T Consensus 479 l~~l~~lL~Pf~P~-~ae~i~~~Lg 502 (673)
T PRK00133 479 FRALAIYLKPVLPE-LAERAEAFLN 502 (673)
T ss_pred HHHHHHHhhChhch-HHHHHHHHhC
Confidence 77777777 48887 6788887764
No 19
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=3e-55 Score=478.60 Aligned_cols=403 Identities=20% Similarity=0.175 Sum_probs=309.4
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
|.+++|+|+|.+||||+|+++.+|+++|++|++|++|.|++|+||+|+||+.+|+++|++|.++++.|.+.|.+++++||
T Consensus 3 it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 82 (530)
T TIGR00398 3 ITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLN 82 (530)
T ss_pred EecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCCCCCC--------------cc
Q 009329 122 CLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL--------------SG 173 (537)
Q Consensus 122 i~~~~~~~r~s~--~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~yG~l--------------s~ 173 (537)
|. +|.++++++ |++.+++++++|.++|++|++++++|||+.+ ||.||.- .+
T Consensus 83 I~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~ 161 (530)
T TIGR00398 83 IS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEP 161 (530)
T ss_pred CC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCH
Confidence 98 688888774 9999999999999999999999999999874 6666642 11
Q ss_pred hhchhh---hcCCCccccc------------------cccCCccceecc-----------c--ccCCCCccccC-CCCCC
Q 009329 174 QRLENN---RAGERVAVDS------------------RKRNPADFALWK-----------A--AKAGEPSWDSP-WGPGR 218 (537)
Q Consensus 174 ~~l~~~---~~g~~~~~~~------------------~k~~~~df~lwk-----------~--~~~g~~~w~~~-wG~g~ 218 (537)
.++... .+|..++... .+.++ ++..|. . ..+-.++++.. ||++.
T Consensus 162 ~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipv 240 (530)
T TIGR00398 162 TELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPV 240 (530)
T ss_pred HHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeC
Confidence 111111 1344432211 01111 121221 1 11223567777 99999
Q ss_pred Cch--------hhhh-HHHH------------HhhcCC---CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEee
Q 009329 219 PGW--------HIEC-SAMS------------AHYLSS---KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNG 274 (537)
Q Consensus 219 PgW--------hiec-s~m~------------~~~~g~---~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g 274 (537)
|+| +.+. ..++ .++|.. ...+|+.|+|++++|+.+|+|++.+++.++|.++ ++||
T Consensus 241 P~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~-~~~g 319 (530)
T TIGR00398 241 PNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQV-FSHG 319 (530)
T ss_pred CCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEE-Eeec
Confidence 975 3332 2222 122311 1229999999999999999999998875555555 7789
Q ss_pred eeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHhcCcccc
Q 009329 275 HVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALSPFQE 351 (537)
Q Consensus 275 ~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~--~l~~l~~~~~~~~~~l~~~~~ 351 (537)
|++++|+|||||+||+|++.|++++||+|++|||+++. ++.++++|+++.+.+..| .+.++++++.|+.+++.+...
T Consensus 320 ~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~ 399 (530)
T TIGR00398 320 YLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFN 399 (530)
T ss_pred cEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999996 789999999999988753 356777877776665443211
Q ss_pred C-----CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHH
Q 009329 352 H-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIEN 426 (537)
Q Consensus 352 ~-----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (537)
. ....+.+++++..+.++.+.+.++| ++++++.|+.. +++|+..+|+|++..++|...+....+...+..+..
T Consensus 400 ~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l~~ 477 (530)
T TIGR00398 400 GVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALRE-IMKLADRGNKYIDENKPWELFKQSPRLKELLAVCSM 477 (530)
T ss_pred CcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHhcCCChhhcCChHHHHHHHHHHHH
Confidence 1 1113457899999999999999999 99999999999 999999999999999999754322223334455556
Q ss_pred HHHHHHhhcc-cCCCCChHHHHHHH
Q 009329 427 EVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 427 ~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
+++.+..+|. |+|. .++++++.+
T Consensus 478 ~l~~l~~ll~P~~P~-~ae~i~~~L 501 (530)
T TIGR00398 478 LIRVLSILLYPIMPK-LSEKILKFL 501 (530)
T ss_pred HHHHHHHHHhCcccH-HHHHHHHHh
Confidence 6676666764 7776 667777665
No 20
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.4e-55 Score=487.22 Aligned_cols=400 Identities=18% Similarity=0.223 Sum_probs=309.3
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009329 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
++|+|+|.|| |++||||+|+++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|++++++|.+.|.++|+
T Consensus 5 ~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~ 84 (648)
T PRK12267 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWK 84 (648)
T ss_pred CEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5788888888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhch----hhhcCCCcccc----
Q 009329 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE----NNRAGERVAVD---- 188 (537)
Q Consensus 119 ~l~i~~~~~~~r~s~--~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~----~~~~g~~~~~~---- 188 (537)
+|||. +|.+.|+|+ |...+++++++|.++|++|..+..++||+.+... ++...+. ...+|..++..
T Consensus 85 ~lgI~-~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~---l~~~~l~~~~~c~~cg~~~e~~~~~~ 160 (648)
T PRK12267 85 KLDIS-YDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETF---FTESQLVDGGKCPDCGREVELVKEES 160 (648)
T ss_pred HcCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCcc---CChHHhccCCcCCCCCCcCeEEecce
Confidence 99998 688999984 8999999999999999999999999998764211 1111111 11234332211
Q ss_pred --------------ccccCCccce-----------eccc--ccCCCCccc-cCCCCCCCc--------hhhhhHHHHH--
Q 009329 189 --------------SRKRNPADFA-----------LWKA--AKAGEPSWD-SPWGPGRPG--------WHIECSAMSA-- 230 (537)
Q Consensus 189 --------------~~k~~~~df~-----------lwk~--~~~g~~~w~-~~wG~g~Pg--------Whiecs~m~~-- 230 (537)
..+.+| +|. -|-. ..+-.++++ .+||++.|+ |+.+...+..
T Consensus 161 ~f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~ 239 (648)
T PRK12267 161 YFFRMSKYQDRLLEYYEENP-DFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITAL 239 (648)
T ss_pred EEEEcHHHHHHHHHHHhhCC-cccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHc
Confidence 012232 221 1322 123346776 489999996 7766533211
Q ss_pred -----------hhcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHh
Q 009329 231 -----------HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 231 -----------~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~ 299 (537)
++| +.|+|+.|+|+++||..+|++++.+++..+|.++ +.|||++++|+|||||+||+|++.|+++.
T Consensus 240 ~~~~~~~~~~~~~w--p~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v-~~hg~l~~eg~KMSKS~GN~i~p~d~l~~ 316 (648)
T PRK12267 240 GYGSDDDELFKKFW--PADVHLVGKDILRFHAIYWPIMLMALGLPLPKKV-FAHGWWLMKDGKMSKSKGNVVDPEELVDR 316 (648)
T ss_pred CCCCCCchHHHhhc--ccceEEEeeeecchhHHHHHHHHHhCCCCCCcEE-EecceEEECCceecccCCcccCHHHHHHH
Confidence 123 6799999999999999999999998875666666 55799999999999999999999999999
Q ss_pred cChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCCCCCChHHHHHHHHHHH
Q 009329 300 YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRD 371 (537)
Q Consensus 300 ~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~ 371 (537)
||+|++||||++. ++.+|.+||++.+.+..|. ...|.|.+.|+.+.+.+.... ....+.|+++++.+..+.+
T Consensus 317 ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~ 396 (648)
T PRK12267 317 YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLK 396 (648)
T ss_pred cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHH
Confidence 9999999999986 8999999999999876553 334555555554443332111 1123457899999999999
Q ss_pred HHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhh--hHHHH-HHHHHHHHHHHHHHhhc-ccCCCCChHHHH
Q 009329 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ--QLSLI-ESLRKIENEVKEVLRIL-GLLPPGAYSEVL 447 (537)
Q Consensus 372 ~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~--~~~~~-~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~ 447 (537)
.+.++| ++++++.|+.. +++|++..|+|++..+||...+. ...++ ..+..+...|+.+..+| .|+|. .+++++
T Consensus 397 ~v~~~~-e~~~~~~al~~-i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~-~ae~i~ 473 (648)
T PRK12267 397 NYEELM-EELQFSRALEE-VWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPE-TSKKIF 473 (648)
T ss_pred HHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccch-HHHHHH
Confidence 999999 89999999999 99999999999999999975322 12222 23445566677666677 47887 677777
Q ss_pred HHHH
Q 009329 448 QQLK 451 (537)
Q Consensus 448 ~~~~ 451 (537)
++++
T Consensus 474 ~~Lg 477 (648)
T PRK12267 474 EQLG 477 (648)
T ss_pred HHcC
Confidence 7764
No 21
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-53 Score=468.30 Aligned_cols=406 Identities=18% Similarity=0.166 Sum_probs=303.9
Q ss_pred eEEEeCCCCC--CCCCcchhhHH-HHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009329 41 GMYVCGVTAY--DLSHLGHARAA-VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 41 ~~y~~gPt~y--g~~HiGh~r~~-v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
++|+|+|.|| |.+||||++++ |.+|+++||+|++|++|.|++|+||||+||+.+|+++|+++.++|++|.+.|.+++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3666666555 99999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCCCCC-------------
Q 009329 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGR------------- 170 (537)
Q Consensus 118 ~~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~yG~------------- 170 (537)
++|||. +|.+++++ +|++.+++++.+|+++|++|+.++.+|||+.+ ||.||.
T Consensus 84 ~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~ 162 (556)
T PRK12268 84 KKLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGA 162 (556)
T ss_pred HHcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccc
Confidence 999997 68899999 89999999999999999999999999999874 566651
Q ss_pred -Ccchhchhh---hcCCCccccc----------ccc-----------CCcc----ceeccc--ccCCCCccccCCCCCCC
Q 009329 171 -LSGQRLENN---RAGERVAVDS----------RKR-----------NPAD----FALWKA--AKAGEPSWDSPWGPGRP 219 (537)
Q Consensus 171 -ls~~~l~~~---~~g~~~~~~~----------~k~-----------~~~d----f~lwk~--~~~g~~~w~~~wG~g~P 219 (537)
+...++... .+|..++... .+. -|.. +.-|-. .++-.+++...||.+.|
T Consensus 163 ~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP 242 (556)
T PRK12268 163 LLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP 242 (556)
T ss_pred cCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC
Confidence 111111111 1233322110 000 0000 000111 11234567778999999
Q ss_pred --c--------hhhhhHHH-------H---------Hhhc--CCCeeEEEecccCcCccchhhHHHhhhcc--CCCCceE
Q 009329 220 --G--------WHIECSAM-------S---------AHYL--SSKFDIHGGGIDLIFPHHENEIAQSCAAC--QDSNVSY 269 (537)
Q Consensus 220 --g--------Whiecs~m-------~---------~~~~--g~~~dih~~G~Dl~f~H~~~~~a~~~a~~--~~~~~~~ 269 (537)
+ |+.+.... . ..+| ..+.++|+.|+|+++||...+++++.+.+ ...|.++
T Consensus 243 ~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v 322 (556)
T PRK12268 243 WPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEI 322 (556)
T ss_pred CCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEe
Confidence 2 44332111 1 1233 22567999999999999999999998876 3444455
Q ss_pred EEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHhc
Q 009329 270 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVAL 346 (537)
Q Consensus 270 ~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~--~l~~l~~~~~~~~~~l 346 (537)
++||||+++|+|||||+||+|+|.|++++||+|++|||+++. +..++++|+++.+....+ .+..+++.+.|+.+++
T Consensus 323 -~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~ 401 (556)
T PRK12268 323 -VSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFI 401 (556)
T ss_pred -eccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999987 778999999999876543 2334555555554444
Q ss_pred Ccccc----CCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhh-HHHHHHH
Q 009329 347 SPFQE----HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESL 421 (537)
Q Consensus 347 ~~~~~----~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~-~~~~~~l 421 (537)
.+... .......+++++..+..+.+.+.++| ++++++.|+.. +++|++.+|+|++..++|...+.. ......+
T Consensus 402 ~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~l 479 (556)
T PRK12268 402 EKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAATVL 479 (556)
T ss_pred HHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHcCCChhhhcCCHHHHHHHH
Confidence 32111 11224568999999999999999999 99999999999 999999999999999998642211 1122234
Q ss_pred HHHHHHHHHHHhhc-ccCCCCChHHHHHHHH
Q 009329 422 RKIENEVKEVLRIL-GLLPPGAYSEVLQQLK 451 (537)
Q Consensus 422 ~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~~ 451 (537)
..+..+|+.++.+| .|+|. .++++++.++
T Consensus 480 ~~~~~~l~~~~~lL~P~~P~-~aeei~~~Lg 509 (556)
T PRK12268 480 YTALNLVRLLAVLLYPFLPF-SAQKIWEMLG 509 (556)
T ss_pred HHHHHHHHHHHHHhhCccch-HHHHHHHHhC
Confidence 44556777777777 48887 6777777653
No 22
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-52 Score=415.26 Aligned_cols=393 Identities=22% Similarity=0.223 Sum_probs=307.5
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009329 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
..++++|..| ..|||||+++.+++|+|+|+.+.+|..|+|.+|+|+||.||...|..+|.+|.++|++..++|...+.
T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k 119 (578)
T KOG0436|consen 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWK 119 (578)
T ss_pred eeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHH
Confidence 7888889987 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCC--Ccc-----hhchhhhcCCCccc--
Q 009329 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSG-----QRLENNRAGERVAV-- 187 (537)
Q Consensus 119 ~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~--ls~-----~~l~~~~~g~~~~~-- 187 (537)
.+||. .+.|.|+| .|...+++++..+..+|++|..++.+|||+++...|-+ +.. ...-.++.|..+-.
T Consensus 120 ~~gi~-yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k 198 (578)
T KOG0436|consen 120 DAGIA-YTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK 198 (578)
T ss_pred HhCcc-hhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec
Confidence 99998 68999999 79999999999999999999999999999997544432 100 01112333433311
Q ss_pred ----------------cccccCCccceecccc--------cCC----CCcccc---CCCCCCCc--------hhhhhHHH
Q 009329 188 ----------------DSRKRNPADFALWKAA--------KAG----EPSWDS---PWGPGRPG--------WHIECSAM 228 (537)
Q Consensus 188 ----------------~~~k~~~~df~lwk~~--------~~g----~~~w~~---~wG~g~Pg--------Whiecs~m 228 (537)
+-...|| +|+.+... +.| ++++++ .||++.|| |+++...+
T Consensus 199 E~NY~FrLSkfqk~l~d~lrkNP-~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nY 277 (578)
T KOG0436|consen 199 EDNYFFRLSKFQKPLEDHLRKNP-RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNY 277 (578)
T ss_pred ccceeeeHHhhhhHHHHHHhcCC-CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhH
Confidence 1123455 55432110 112 245544 79999997 98885433
Q ss_pred HHh--------------hcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHh
Q 009329 229 SAH--------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 294 (537)
Q Consensus 229 ~~~--------------~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~ 294 (537)
.+- .+|+|..+|++|+|++.||.++|||+++|++.++|.++++ |||++.+|.|||||+||+|.|.
T Consensus 278 iSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~v-Hghwt~ngmKMsKSLGNvvdP~ 356 (578)
T KOG0436|consen 278 ISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFV-HGHWTKNGMKMSKSLGNVVDPF 356 (578)
T ss_pred HHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEE-eeeeeecceecchhhccccCHH
Confidence 221 2577899999999999999999999999998877777755 5899999999999999999999
Q ss_pred HHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHH--hcCcc-ccCC---C--CCCCChHHH
Q 009329 295 QITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEV--ALSPF-QEHG---K--TARINPAAE 363 (537)
Q Consensus 295 dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~--~l~~~-~~~~---~--~~~~~~~l~ 363 (537)
++++.||+|++|||||.. ....|-||+++.+....|. ...+-+.++|+++ +.... .... + .......+.
T Consensus 357 ~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv 436 (578)
T KOG0436|consen 357 ELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLV 436 (578)
T ss_pred HHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHH
Confidence 999999999999999997 8899999999999877653 1123344455554 21111 1100 0 112345688
Q ss_pred HHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccC
Q 009329 364 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438 (537)
Q Consensus 364 ~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~ 438 (537)
..+.++++.+.+.+ |+|..+.|+.+ +.+.++..|.++++.+||+...+.+.....+..++..+-+.+.|+||.
T Consensus 437 ~~v~kl~ev~a~~~-d~f~~~~ale~-V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~il 509 (578)
T KOG0436|consen 437 DTVEKLPEVAATNY-DNFSLYSALEA-VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGIL 509 (578)
T ss_pred HHHHHhHHHHHhhc-ccccHHHHHHH-HHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999 99999999999 999999999999999999875444334444555556666666677754
No 23
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=3.8e-52 Score=424.83 Aligned_cols=269 Identities=21% Similarity=0.225 Sum_probs=229.9
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCC-------------ChHHHHH
Q 009329 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGE-------------NPLSLSN 107 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~-------------~~~~~~~ 107 (537)
.|...+|||||.+||||+|+++.+|+++|+++++|++|.|++|+|++|++|+.+|++.+. ++.++|+
T Consensus 3 ~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
T cd00668 3 YVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVE 82 (312)
T ss_pred EEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHH
Confidence 456668999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred HHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCC
Q 009329 108 RYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGER 184 (537)
Q Consensus 108 ~~~~~~~~~l~~l~i~~~-~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~ 184 (537)
+|.++|.++|++|||..+ +.+.+++ +|++.++++|.+|.++|++|++.+.|++...-+.+++.+++..++.+..+.
T Consensus 83 ~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~- 161 (312)
T cd00668 83 EMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGK- 161 (312)
T ss_pred HHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCC-
Confidence 999999999999999853 1333333 799999999999999999999999999988888889988877666665443
Q ss_pred ccccccc-------cCCccceecccccCCCCccccCCCCCCCchhhhh----HH---HHHhhcCC--------CeeEEEe
Q 009329 185 VAVDSRK-------RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIEC----SA---MSAHYLSS--------KFDIHGG 242 (537)
Q Consensus 185 ~~~~~~k-------~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiec----s~---m~~~~~g~--------~~dih~~ 242 (537)
+..+..| +++.||++ +|+++||.++||||++| +. ++..+++. +.|||++
T Consensus 162 ~~p~~~~~~~~~~l~~~~d~~i---------sR~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~ 232 (312)
T cd00668 162 IVPEHVKNRMEAWLESLLDWAI---------SRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLI 232 (312)
T ss_pred cCChHHHHHHHHHHhCCCCeEE---------eccCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEEE
Confidence 2222222 24446655 45679999999999999 43 33333332 6899999
Q ss_pred cccCcCccchhhHHHhhhccCC-CCceEEEEeeeeeeCC-ccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcc
Q 009329 243 GIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLN 319 (537)
Q Consensus 243 G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G-~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~ 319 (537)
|+|++||||+++++++.++++. ++.++|+| ||++++| +|||||+||+|++.|++++|++|++|||+++. ++.+|.+
T Consensus 233 G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~ 311 (312)
T cd00668 233 GKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIR 311 (312)
T ss_pred ecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCC
Confidence 9999999999999999998876 78899887 9999977 99999999999999999999999999999987 6888887
Q ss_pred c
Q 009329 320 Y 320 (537)
Q Consensus 320 f 320 (537)
|
T Consensus 312 ~ 312 (312)
T cd00668 312 L 312 (312)
T ss_pred C
Confidence 6
No 24
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=6.6e-49 Score=409.68 Aligned_cols=292 Identities=24% Similarity=0.273 Sum_probs=217.7
Q ss_pred EEEeCCC--CCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009329 42 MYVCGVT--AYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 42 ~y~~gPt--~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
+|+|+|. |+|.|||||++++|.||+++|++|++|++|.|++|+|+||.||..+|+++|++|++++++|++.|.+.+++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~ 80 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEA 80 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4566654 55999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCCCC-C-------------C
Q 009329 120 LQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYG-R-------------L 171 (537)
Q Consensus 120 l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~yG-~-------------l 171 (537)
+||. +|.|.|++ .|.+.+++++++|.++|++|+++..++||+.+ ||.|| . +
T Consensus 81 ~~I~-~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~ 159 (391)
T PF09334_consen 81 LNIS-YDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPL 159 (391)
T ss_dssp TT----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBE
T ss_pred cCCC-CcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCc
Confidence 9998 68899987 79999999999999999999999999999885 67666 1 1
Q ss_pred cchhchhh---hcCCCccccc----------c--------ccCCccceecccc---------cCC----CCccccCCCCC
Q 009329 172 SGQRLENN---RAGERVAVDS----------R--------KRNPADFALWKAA---------KAG----EPSWDSPWGPG 217 (537)
Q Consensus 172 s~~~l~~~---~~g~~~~~~~----------~--------k~~~~df~lwk~~---------~~g----~~~w~~~wG~g 217 (537)
.+.++.+. .+|..+.+.. + ..++ ++ |... +.| .++.+.+||++
T Consensus 160 ~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~-~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~ 236 (391)
T PF09334_consen 160 EPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNP-DF--PPPRVREIVRNWLKEGLPDLSISRPLDWGIP 236 (391)
T ss_dssp ECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHST-TS--SHHHHHHHHHHHHHT----EE-ECTTSSSEE
T ss_pred ccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCC-CC--CChhHHHHHHHHhhcccCceeeecCCCCcce
Confidence 11122221 1243332211 0 0111 11 2111 112 24677899999
Q ss_pred CCc--------hhhhhHHHH----------------Hhhc---CCCeeEEEecccCcCccchhhHHHhhhccCCCCceEE
Q 009329 218 RPG--------WHIECSAMS----------------AHYL---SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (537)
Q Consensus 218 ~Pg--------Whiecs~m~----------------~~~~---g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~ 270 (537)
.|+ |+.++..+. .++| +.+..+|++|+||+++|.++|||++.|++.+.|.++
T Consensus 237 vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i- 315 (391)
T PF09334_consen 237 VPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRI- 315 (391)
T ss_dssp ETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SEE-
T ss_pred eeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCEE-
Confidence 995 887654331 1234 234679999999999999999999999766666666
Q ss_pred EEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH-----HHHHHHH
Q 009329 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQT 338 (537)
Q Consensus 271 ~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~-----l~~l~~~ 338 (537)
+.|||++++|+|||||+||+|++.|+++.|++|++||||++. +..++.+|+++.+.+..|. ++||.++
T Consensus 316 ~~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R 389 (391)
T PF09334_consen 316 VVHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNR 389 (391)
T ss_dssp EEE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHH
T ss_pred EeeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhc
Confidence 667999999999999999999999999999999999999997 8899999999999988764 6666554
No 25
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.5e-48 Score=418.03 Aligned_cols=362 Identities=17% Similarity=0.139 Sum_probs=290.7
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009329 36 VPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
.+++|.|++|||||+|++||||+|+++++|+|+|+|++.||+|.++++++|+|++|...+...+..|+.+++.+.+.|.+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~ 188 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKE 188 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999998888888999999999999999
Q ss_pred HHHHcCCCCCCCccchhh--hHHHHHHHHHHHHHCCcee-eeecceeecCCCCCCCCCCcchhchhhhcCCCcccccccc
Q 009329 116 DMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKR 192 (537)
Q Consensus 116 ~l~~l~i~~~~~~~r~s~--~~~~~~~~i~~L~~~G~ay-~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~ 192 (537)
+|++|||. +|.++++++ |.+.+++++++|.++|++| +.+|.+||++..+ |
T Consensus 189 ~l~~LgI~-~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~---~----------------------- 241 (507)
T PRK01611 189 DLDRLGVH-FDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEF---G----------------------- 241 (507)
T ss_pred HHHHcCCe-eeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhh---C-----------------------
Confidence 99999998 477777774 4568999999999999999 8899999986532 1
Q ss_pred CCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhccCCCC-ceEEE
Q 009329 193 NPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWM 271 (537)
Q Consensus 193 ~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~-~~~~~ 271 (537)
++.|++|||+ +|.++|.++ -++||+.|... ++.-++|++.+.+..|+++ .+.+++++..+. .+++.
T Consensus 242 ~~~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~~----~d~~i~V~g~~q~~hf~~~---~~~~~~lg~~~~~~~~~~ 308 (507)
T PRK01611 242 DDKDRVLIKS--DGTYTYFTR----DIAYHLYKFER----FDRVIYVVGADHHGHFKRL---KAALKALGYDPDALEVLL 308 (507)
T ss_pred CCCCeEEEEC--CCCccchHH----HHHHHHHHHhh----cCEEEEEECCChHHHHHHH---HHHHHHcCCCcccceEEE
Confidence 0127889997 677776653 45778777533 4434445555333322222 244455554332 36668
Q ss_pred Eeeeeee---CCccccccCCCcccHhHHHHh-cCh----------------hhHHHHHhhcCCCCCcccCHHHHHHHHH-
Q 009329 272 HNGHVTN---NNEKMSKSLGNFFTIRQITER-YHP----------------LALRHFLISAHYRSPLNYSVLQLDSASD- 330 (537)
Q Consensus 272 h~g~v~~---~G~KMSKS~Gn~i~~~dll~~-~~~----------------d~lR~~ll~~~~~~~~~fs~~~l~~~~~- 330 (537)
|..|.++ +|+|||||+||+|++.|++++ ++. |++||++|+.++.++++|+++.+.+..+
T Consensus 309 h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~ 388 (507)
T PRK01611 309 HQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGN 388 (507)
T ss_pred EEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCC
Confidence 8554444 678999999999999999999 999 9999999999999999999999987764
Q ss_pred HHHHHHHHHHHHHHhcCccccCC-------CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHh
Q 009329 331 AVFYIYQTLQDCEVALSPFQEHG-------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (537)
Q Consensus 331 ~l~~l~~~~~~~~~~l~~~~~~~-------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~ 403 (537)
+.-+++|+++|+++++++....+ ..++.+.+|+..+..+++.+.+++ ++++ |+.++.||++|++.+|+||+
T Consensus 389 ~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~-p~~l~~yl~~la~~f~~fY~ 466 (507)
T PRK01611 389 NPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELE-PHRIANYLYELAGAFHSFYN 466 (507)
T ss_pred CcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCC-cHHHHHHHHHHHHHHHHHHH
Confidence 23399999999999887643111 113456889999999999999999 7876 66666779999999999998
Q ss_pred hhcccCch-h-hhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009329 404 MLKKKQPK-Q-QQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 404 ~~~~~~~~-~-~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
.++ .... . ....|+.++.++..+|.++|.+|||.++
T Consensus 467 ~~~-l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 467 RVL-LKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred HCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 776 4322 2 3468999999999999999999999764
No 26
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.9e-46 Score=383.43 Aligned_cols=273 Identities=23% Similarity=0.263 Sum_probs=211.2
Q ss_pred EEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009329 42 MYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 42 ~y~~--gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
+|+| .|+|||++||||+|+++++|+++|++|++|++|.|++|+||||+||+.+|+++|++|+++++.+.+.|.+++++
T Consensus 2 ~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~ 81 (319)
T cd00814 2 VLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKW 81 (319)
T ss_pred EEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444 45566999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcch-----hchhhhcCCCcccccccc
Q 009329 120 LQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQ-----RLENNRAGERVAVDSRKR 192 (537)
Q Consensus 120 l~i~~~~~~~r~s~--~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~-----~l~~~~~g~~~~~~~~k~ 192 (537)
|||. +|.++++++ |++.+++++++|.++|++|+++..++||+.+...+..+... .+.+... .+ .+..+.
T Consensus 82 LgI~-~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~--~l-~~~~~~ 157 (319)
T cd00814 82 LNIS-FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQD--RL-LEWLEK 157 (319)
T ss_pred cCCc-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHH--HH-HHHHHh
Confidence 9998 688888774 89999999999999999999999999988743222110000 0000000 00 000011
Q ss_pred CCccce----------eccc--ccCCCCcccc-CCCCCCCc--------hhhhhHHHHH--------------hhcCCCe
Q 009329 193 NPADFA----------LWKA--AKAGEPSWDS-PWGPGRPG--------WHIECSAMSA--------------HYLSSKF 237 (537)
Q Consensus 193 ~~~df~----------lwk~--~~~g~~~w~~-~wG~g~Pg--------Whiecs~m~~--------------~~~g~~~ 237 (537)
++ ++. -|-. ..+-.++++. .||++.|+ |+.+...... ...+.+.
T Consensus 158 ~~-~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T cd00814 158 NP-DFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPE 236 (319)
T ss_pred CC-ccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCc
Confidence 11 110 1111 1122467788 99999884 7654322110 0124578
Q ss_pred eEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCC
Q 009329 238 DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRS 316 (537)
Q Consensus 238 dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~ 316 (537)
+||++|+|+++||+++|+|++.+++ .++++.+++|||++++|+|||||+||+|++.|+++.|++|++|||+++. +..+
T Consensus 237 ~v~~~G~D~~~fh~~~~pa~l~~~~-~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~ 315 (319)
T cd00814 237 LVHFIGKDIIRFHAIYWPAMLLGAG-LPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGK 315 (319)
T ss_pred eEEEEeechhhhhHHHHHHHHHhCC-CCCCcEeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCC
Confidence 9999999999999999999998876 4455566889999999999999999999999999999999999999997 8888
Q ss_pred Cccc
Q 009329 317 PLNY 320 (537)
Q Consensus 317 ~~~f 320 (537)
+.+|
T Consensus 316 d~~f 319 (319)
T cd00814 316 DSDF 319 (319)
T ss_pred CCCC
Confidence 8887
No 27
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.1e-44 Score=403.96 Aligned_cols=404 Identities=15% Similarity=0.159 Sum_probs=294.9
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH-cCCChH------------HHHH
Q 009329 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGENPL------------SLSN 107 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~-~g~~~~------------~~~~ 107 (537)
.+....|+|+|.+||||+++++++|+++||+|++|++|.|+.|+|.+|.+|...|++ .|+++. ++++
T Consensus 41 ~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~ 120 (800)
T PRK13208 41 SIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTD 120 (800)
T ss_pred EEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHH
Confidence 333445677799999999999999999999999999999999999999999999987 588876 5999
Q ss_pred HHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhch-------
Q 009329 108 RYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE------- 177 (537)
Q Consensus 108 ~~~~~~~~~l~~l~i~~~-~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~------- 177 (537)
+|.+.+.++|++||+..+ +.+.+|+ +|...++.+|.+|.++|++|++...|+||+.+... |+..+++
T Consensus 121 ~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~---Lsd~ev~~~~~~~~ 197 (800)
T PRK13208 121 EDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETA---IAQAEVEYREREGK 197 (800)
T ss_pred HHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCc---cchhhhccccccce
Confidence 999999999999999742 1334444 78999999999999999999999999999874211 1110000
Q ss_pred ----------------------------------------------------------------hhhcCCC---------
Q 009329 178 ----------------------------------------------------------------NNRAGER--------- 184 (537)
Q Consensus 178 ----------------------------------------------------------------~~~~g~~--------- 184 (537)
.+..|..
T Consensus 198 ~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd 277 (800)
T PRK13208 198 LNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGD 277 (800)
T ss_pred EEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCC
Confidence 0000000
Q ss_pred -----------------------------------------------------ccccccc-cCCc-----cce------e
Q 009329 185 -----------------------------------------------------VAVDSRK-RNPA-----DFA------L 199 (537)
Q Consensus 185 -----------------------------------------------------~~~~~~k-~~~~-----df~------l 199 (537)
+.....+ ..|. +-. -
T Consensus 278 ~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~q 357 (800)
T PRK13208 278 KTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQ 357 (800)
T ss_pred HHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccce
Confidence 0000000 0000 000 0
Q ss_pred cc--------------------------------cc-c-CCCCccccCCCCCCCchhhh-h-------------------
Q 009329 200 WK--------------------------------AA-K-AGEPSWDSPWGPGRPGWHIE-C------------------- 225 (537)
Q Consensus 200 wk--------------------------------~~-~-~g~~~w~~~wG~g~PgWhie-c------------------- 225 (537)
|. .. + +-.+++...||.+.|-|+.+ |
T Consensus 358 wfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d~ 437 (800)
T PRK13208 358 WFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDE 437 (800)
T ss_pred eeEeCHHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCchhhc
Confidence 10 00 0 22245566799999977631 1
Q ss_pred ------HH--------------------HH-HhhcC-----------CCeeEEEecccCcCccchhhHHHhhhccCC-CC
Q 009329 226 ------SA--------------------MS-AHYLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SN 266 (537)
Q Consensus 226 ------s~--------------------m~-~~~~g-----------~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~ 266 (537)
.. .. ...+| .|.|++++|+|++++|....++++.++.+. ||
T Consensus 438 ~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf 517 (800)
T PRK13208 438 PPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPW 517 (800)
T ss_pred cccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCc
Confidence 00 00 00111 278999999999999999999998888765 66
Q ss_pred ceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009329 267 VSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA 345 (537)
Q Consensus 267 ~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~ 345 (537)
.++++ |||++. +|+|||||+||+|+|.|++++||+|++|||+++++++++++||++.+....+.+.+|+++++.+..+
T Consensus 518 ~~v~~-hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~ 596 (800)
T PRK13208 518 KNIMI-SGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHF 596 (800)
T ss_pred ceEEE-eeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78855 699985 9999999999999999999999999999999977999999999999998888888888886655432
Q ss_pred cCccc--cCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHH--HHHHHHhhhcccCchh-hhHHHHHH
Q 009329 346 LSPFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQPKQ-QQLSLIES 420 (537)
Q Consensus 346 l~~~~--~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~--~~N~~~~~~~~~~~~~-~~~~~~~~ 420 (537)
..... ........|++++..+..+.+.+.++| ++++++.|++. |++|+. ..|.|++..+++.... ....+...
T Consensus 597 ~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~-i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~ 674 (800)
T PRK13208 597 SADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEE-IESFFWHVFCDDYLELVKSRAYGEDEEEEQKSA 674 (800)
T ss_pred ccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHH
Confidence 21000 001113357889999999999999999 89999999999 999986 4899999888753211 11112334
Q ss_pred HHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 421 LRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 421 l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
+..+..+|+.++.+|. |+|. .++++|+.+.
T Consensus 675 ~~~l~~~l~~l~~LLaPf~P~-iaEelw~~L~ 705 (800)
T PRK13208 675 RYTLYTVLDTLLRLLAPFLPF-ITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHHHHHHHhcccchh-hHHHHHHhCC
Confidence 4566778888888885 8888 7899998875
No 28
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.1e-41 Score=389.59 Aligned_cols=404 Identities=17% Similarity=0.182 Sum_probs=293.5
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH----cCCCh------------H
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND----LGENP------------L 103 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~----~g~~~------------~ 103 (537)
..|+...|+++|.+||||++++++.|+++||.|++|++|.++.|+|.+|.+|...+++ .|.++ .
T Consensus 35 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~ 114 (861)
T TIGR00422 35 FCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIW 114 (861)
T ss_pred EEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHH
Confidence 4455556666699999999999999999999999999999999999999988776543 46665 5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCC-ccc-hh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhc---
Q 009329 104 SLSNRYCQEYLVDMADLQCLPPTY-QPR-VS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL--- 176 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~l~i~~~~~-~~r-~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l--- 176 (537)
+++++|.+.+.+.+++||+.. |. .++ |+ .|...++.+|.+|.++|++|++...|+||+.+..-. |..++
T Consensus 115 ~~~~~~~~~~~~~~~~lG~s~-Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~l---sd~Ev~~~ 190 (861)
T TIGR00422 115 EWKEESGGTIKNQIKRLGASL-DWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAI---SDIEVEYK 190 (861)
T ss_pred HHHHHHHHHHHHHHHHhCeee-ecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcc---hHhHhhcc
Confidence 789999999999999999984 42 112 22 788999999999999999999999999998742110 00000
Q ss_pred ----------------------------------------------------------------------hhhhcCCCc-
Q 009329 177 ----------------------------------------------------------------------ENNRAGERV- 185 (537)
Q Consensus 177 ----------------------------------------------------------------------~~~~~g~~~- 185 (537)
-++..|..+
T Consensus 191 ~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V 270 (861)
T TIGR00422 191 EVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAV 270 (861)
T ss_pred cccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcccCCCce
Confidence 000000000
Q ss_pred -------------------------------------------------------------cccccc-cCCc-----c--
Q 009329 186 -------------------------------------------------------------AVDSRK-RNPA-----D-- 196 (537)
Q Consensus 186 -------------------------------------------------------------~~~~~k-~~~~-----d-- 196 (537)
...+.. ..|. +
T Consensus 271 ~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~v 350 (861)
T TIGR00422 271 KVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVV 350 (861)
T ss_pred EecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEE
Confidence 000000 0000 0
Q ss_pred --------------------------ceeccc-------------ccCCCCccccCCCCCCCchhhh-hHH---------
Q 009329 197 --------------------------FALWKA-------------AKAGEPSWDSPWGPGRPGWHIE-CSA--------- 227 (537)
Q Consensus 197 --------------------------f~lwk~-------------~~~g~~~w~~~wG~g~PgWhie-cs~--------- 227 (537)
-.-|.. .++-.+++...||.+.|.|+.. |..
T Consensus 351 e~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~ 430 (861)
T TIGR00422 351 EPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPL 430 (861)
T ss_pred EEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHH
Confidence 000000 0112245667899999998742 210
Q ss_pred ------------H----------------HHhhcC-----------CCeeEEEecccCcCccchhhHHHhhhccCC-CCc
Q 009329 228 ------------M----------------SAHYLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 267 (537)
Q Consensus 228 ------------m----------------~~~~~g-----------~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~ 267 (537)
| ....+| .|.|+|+.|+|++++|...+++++.++.++ ||.
T Consensus 431 ~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk 510 (861)
T TIGR00422 431 PDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFK 510 (861)
T ss_pred hhhhhccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchh
Confidence 0 000012 267999999999999999999999888765 557
Q ss_pred eEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009329 268 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA 345 (537)
Q Consensus 268 ~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~ 345 (537)
++++ ||||+. +|+|||||+||+|+|.|++++||+|++|||+++. +.++|++||++.+.+..+.+.+|+|+.+.+...
T Consensus 511 ~v~~-hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~ 589 (861)
T TIGR00422 511 EVYI-HGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMN 589 (861)
T ss_pred eEEE-eeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8866 599997 8999999999999999999999999999999987 559999999999999888888888865544433
Q ss_pred cCccc--c--CCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHH
Q 009329 346 LSPFQ--E--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIE 419 (537)
Q Consensus 346 l~~~~--~--~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~ 419 (537)
+.... . .......|++++..++.+.+.+.++| +++++..|+.. |++|+ ...|+|++..++|........+..
T Consensus 590 ~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~ 667 (861)
T TIGR00422 590 LSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKA-LYEFIWNDFCDWYIELVKYRLYNGNEAEKKA 667 (861)
T ss_pred cccccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhHHHHcCCCcHHHHH
Confidence 32210 0 01123457899999999999999999 99999999999 99997 688999999888753221122333
Q ss_pred HHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 420 SLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 420 ~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
....+..+|..++.+|. |+|. .++++|+.+.
T Consensus 668 ~~~~l~~~l~~~~~lL~Pf~P~-itEelw~~L~ 699 (861)
T TIGR00422 668 ARDTLYYVLDKALRLLHPFMPF-ITEEIWQHFK 699 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhCc
Confidence 44566677788888885 8888 7889998875
No 29
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.5e-43 Score=357.47 Aligned_cols=268 Identities=18% Similarity=0.161 Sum_probs=203.4
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
|.+..|+|+|.+||||+|+++.+|+++|++|++|++|.|++|+||+|+||+.+|++.|++|.+++++|.+.|.++++.||
T Consensus 4 it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 83 (314)
T cd00812 4 ILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMG 83 (314)
T ss_pred EecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 33345666699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC--ccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCC-----cchhchhhhcCCCcccccccc
Q 009329 122 CLPPTY--QPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRL-----SGQRLENNRAGERVAVDSRKR 192 (537)
Q Consensus 122 i~~~~~--~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~l-----s~~~l~~~~~g~~~~~~~~k~ 192 (537)
|. +|. +.+++ +|++.++.++.+|.++|++|++++.+|||+...--|=++ .+.-.+.+.... .-.+..+
T Consensus 84 i~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~-~~p~~~~- 160 (314)
T cd00812 84 FS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLD-GWPEEVR- 160 (314)
T ss_pred cc-eecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcC-cCCHHHH-
Confidence 97 453 33333 688889999999999999999999999996532212122 111111111110 0000000
Q ss_pred CCccceecccccCCCCccccCCCCCCC-chhhhhHHHHH---------------------------hhcCCCeeEEEecc
Q 009329 193 NPADFALWKAAKAGEPSWDSPWGPGRP-GWHIECSAMSA---------------------------HYLSSKFDIHGGGI 244 (537)
Q Consensus 193 ~~~df~lwk~~~~g~~~w~~~wG~g~P-gWhiecs~m~~---------------------------~~~g~~~dih~~G~ 244 (537)
..+..|.. ++++.+||.++| +|+++|-..+. .+| .+.|||++|+
T Consensus 161 --~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w-~p~di~v~G~ 232 (314)
T cd00812 161 --AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYW-YPVDIYIGGK 232 (314)
T ss_pred --HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHh-CCCeeeecch
Confidence 12223432 678889999999 46666532111 011 2689999999
Q ss_pred cCcCccch---hhHHHhhhccC---CCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCc
Q 009329 245 DLIFPHHE---NEIAQSCAACQ---DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318 (537)
Q Consensus 245 Dl~f~H~~---~~~a~~~a~~~---~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~ 318 (537)
|++++|+. .+++.+.+++. .++.++ +++|||+++|+|||||+||+|++.|+++++++|++||++++... ++.
T Consensus 233 D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~-~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~ 310 (314)
T cd00812 233 EHAPNHLLYSRFNHKALFDEGLVTDEPPKGL-IVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDA 310 (314)
T ss_pred hHHHHHHHHHHHHHHHHcCcccccccCcHHh-eecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCC
Confidence 99999984 45555554442 444555 68899999999999999999999999999999999999999866 999
Q ss_pred ccCH
Q 009329 319 NYSV 322 (537)
Q Consensus 319 ~fs~ 322 (537)
+|+|
T Consensus 311 ~f~~ 314 (314)
T cd00812 311 DFDW 314 (314)
T ss_pred CCCC
Confidence 9985
No 30
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.8e-41 Score=384.24 Aligned_cols=406 Identities=16% Similarity=0.188 Sum_probs=287.5
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHH----HHHHHHHcCCChHH-----------
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK----IIRRANDLGENPLS----------- 104 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~k----i~~~a~~~g~~~~~----------- 104 (537)
-.+....|+|+|.+||||++++++.|+++||.|++|++|.|+.|+|.+|.. +..++.+.|+++.+
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~ 117 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVW 117 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHH
Confidence 344444566779999999999999999999999999999999999999975 44445555777654
Q ss_pred -HHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeecceeecCCCCC-------CC----C
Q 009329 105 -LSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------NY----G 169 (537)
Q Consensus 105 -~~~~~~~~~~~~l~~l~i~~~~~~~r~s---~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~-------~y----G 169 (537)
++++|.+.+.+.+++||+..+-...+.| .|...++.+|.+|.++|++|++...|+||+.+.. .| |
T Consensus 118 ~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~ 197 (874)
T PRK05729 118 EWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKG 197 (874)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccccccc
Confidence 5999999999999999998431112222 7888999999999999999999999999987411 00 0
Q ss_pred C------------------------------------------C---------cchhc-------hhhhcCCCc------
Q 009329 170 R------------------------------------------L---------SGQRL-------ENNRAGERV------ 185 (537)
Q Consensus 170 ~------------------------------------------l---------s~~~l-------~~~~~g~~~------ 185 (537)
. | .+..+ -++..|..+
T Consensus 198 ~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pa 277 (874)
T PRK05729 198 KLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPA 277 (874)
T ss_pred eEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecCC
Confidence 0 0 00000 000000000
Q ss_pred --------------------------------------------------------cccccc-cCCc-----ccee----
Q 009329 186 --------------------------------------------------------AVDSRK-RNPA-----DFAL---- 199 (537)
Q Consensus 186 --------------------------------------------------------~~~~~k-~~~~-----df~l---- 199 (537)
...++. ..|. +-+.
T Consensus 278 h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~ 357 (874)
T PRK05729 278 HDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLS 357 (874)
T ss_pred CCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEec
Confidence 000000 0000 0000
Q ss_pred --c-------c----------------------------cccCCCCccccCCCCCCCchhhhh-----------------
Q 009329 200 --W-------K----------------------------AAKAGEPSWDSPWGPGRPGWHIEC----------------- 225 (537)
Q Consensus 200 --w-------k----------------------------~~~~g~~~w~~~wG~g~PgWhiec----------------- 225 (537)
| + ..++-.+++...||.+.|.|+.+-
T Consensus 358 ~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~~ 437 (874)
T PRK05729 358 DQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKAL 437 (874)
T ss_pred CcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCcEEeCCcccccccccC
Confidence 0 0 001122455678999999876420
Q ss_pred -------------HHHH-HhhcC-----------CCeeEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeee-
Q 009329 226 -------------SAMS-AHYLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN- 278 (537)
Q Consensus 226 -------------s~m~-~~~~g-----------~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~- 278 (537)
|+.. ...+| .|.|+|+.|+|++|+|....++++.++.+. ||.++++| |+|+.
T Consensus 438 ~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~h-G~v~d~ 516 (874)
T PRK05729 438 LTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRDE 516 (874)
T ss_pred eEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEe-eeEECC
Confidence 0000 00012 267999999999998777766766666665 56788775 89985
Q ss_pred CCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-----
Q 009329 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH----- 352 (537)
Q Consensus 279 ~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~----- 352 (537)
+|+|||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+.+..+.+.+|+++.+.+...+......
T Consensus 517 ~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~ 596 (874)
T PRK05729 517 QGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDP 596 (874)
T ss_pred CCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccccc
Confidence 9999999999999999999999999999999987 8999999999999998888888888654443332221110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHH
Q 009329 353 GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 430 (537)
Q Consensus 353 ~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 430 (537)
......|++++..+..+...+.++| +++++..|+.. |++|+ ...|.|++..++|.. . . .+......+..+|+.
T Consensus 597 ~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~-l~~f~~~~~~~~Yle~~k~~l~-~-~-~~~~~~~~l~~~l~~ 671 (874)
T PRK05729 597 EELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARA-LYEFIWNEFCDWYLELAKPVLQ-E-A-AKRATRATLAYVLEQ 671 (874)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh-h-h-HHHHHHHHHHHHHHH
Confidence 1113457899999999999999999 89999999999 99998 578999998888732 1 1 123344566678888
Q ss_pred HHhhcc-cCCCCChHHHHHHHHH
Q 009329 431 VLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 431 ~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
++.+|. |+|. .++++|+.+..
T Consensus 672 ~~~lL~Pf~Pf-itEelw~~l~~ 693 (874)
T PRK05729 672 ILRLLHPFMPF-ITEELWQKLAP 693 (874)
T ss_pred HHHHHcccchh-hHHHHHHhccc
Confidence 888884 8888 78999998853
No 31
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.8e-40 Score=380.38 Aligned_cols=201 Identities=17% Similarity=0.138 Sum_probs=166.7
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccC-CCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-C
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-H 313 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~ 313 (537)
|.|+|++|+||+++|+.++++++.|..+ .++++.|+|||||+++|+|||||+||+|+|.++++.||+|++||||++. +
T Consensus 573 P~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~ 652 (938)
T TIGR00395 573 PLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAE 652 (938)
T ss_pred CceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence 7899999999999999999999888754 4567888999999999999999999999999999999999999999997 9
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhh-HHHHH
Q 009329 314 YRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL-TGAFQ 392 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al-~~~L~ 392 (537)
+++|++|+++.+.++.+.+.++++++.++....... ........|++++..++.+...+.++| ++|+++.|+ .. ++
T Consensus 653 ~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~-~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~-l~ 729 (938)
T TIGR00395 653 TVQDADWKESEVEGTILRLERLYEFAEEITKESNLE-TGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYA-LF 729 (938)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHH-HH
Confidence 999999999999999999999998887765432210 000123457899999999999999999 899999999 77 99
Q ss_pred HHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 393 ~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
+|+..+|.|+...+. +.. ..+..+|+.++.+|. |+|. .++++|+.++
T Consensus 730 ~~~~~~n~Yl~~~~~---------~~~--~~l~~~l~~~~~LLaP~~P~-~aEeiw~~Lg 777 (938)
T TIGR00395 730 DLQADVDWYRRRGGV---------NHK--DVLARYLETWIKLLAPFAPH-FAEEMWEEVG 777 (938)
T ss_pred HHHHHHHHHHHhCcc---------hHH--HHHHHHHHHHHHHhcCcccH-HHHHHHHHcC
Confidence 999999988764221 111 135567777788885 8887 7889998874
No 32
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.1e-42 Score=358.38 Aligned_cols=275 Identities=17% Similarity=0.176 Sum_probs=205.8
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHc---------CCCh-------HH
Q 009329 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL---------GENP-------LS 104 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~---------g~~~-------~~ 104 (537)
.+....|+|+|.+||||+++++.+|+++||+|++|++|.|++|+|+||.+|...|.++ ++++ .+
T Consensus 4 ~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
T cd00817 4 VIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWE 83 (382)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHH
Confidence 3444567778999999999999999999999999999999999999999999888764 3443 46
Q ss_pred HHHHHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhc
Q 009329 105 LSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRA 181 (537)
Q Consensus 105 ~~~~~~~~~~~~l~~l~i~~~-~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~ 181 (537)
++++|++.|.+++++|||..+ +.+.+++ +|.+.++.++.+|.++|++|++...++||+.+-.. |+..++.+ .+
T Consensus 84 ~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~---l~~~evc~-~c 159 (382)
T cd00817 84 WKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTA---ISDIEVCS-RS 159 (382)
T ss_pred HHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCC---CCcchhcc-cC
Confidence 899999999999999999742 2555555 78999999999999999999999999999875211 22222211 12
Q ss_pred CCCccc------------------cccccCCcc---------ceeccc-ccCCCCccccCCCCCCCchhhh-h-------
Q 009329 182 GERVAV------------------DSRKRNPAD---------FALWKA-AKAGEPSWDSPWGPGRPGWHIE-C------- 225 (537)
Q Consensus 182 g~~~~~------------------~~~k~~~~d---------f~lwk~-~~~g~~~w~~~wG~g~PgWhie-c------- 225 (537)
|..+.. +..+.++.. +.-|-. ..+-.++++..||++.|.|..+ |
T Consensus 160 g~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~ 239 (382)
T cd00817 160 GDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAR 239 (382)
T ss_pred CCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecc
Confidence 222110 001111100 001111 2233467888999999987532 1
Q ss_pred ------------------------------------H-HHHH-hh------c--CCCeeEEEecccCcCccchhhHHHhh
Q 009329 226 ------------------------------------S-AMSA-HY------L--SSKFDIHGGGIDLIFPHHENEIAQSC 259 (537)
Q Consensus 226 ------------------------------------s-~m~~-~~------~--g~~~dih~~G~Dl~f~H~~~~~a~~~ 259 (537)
+ .++. .+ | -.+.|+|++|+|++++|+.++++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~ 319 (382)
T cd00817 240 EEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGL 319 (382)
T ss_pred hhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHH
Confidence 0 1110 11 1 13679999999999999999999998
Q ss_pred hccCC-CCceEEEEeeeee-eCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCccc
Q 009329 260 AACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 320 (537)
Q Consensus 260 a~~~~-~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~f 320 (537)
++.+. ++.++++| |+|+ .+|+|||||+||+|++.|++++||+|++|||+++. +..+|.+|
T Consensus 320 ~~~g~~p~~~v~~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 320 KLTGKLPFKEVYLH-GLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HhhCCCchHHeEee-eeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 88765 45788675 7888 69999999999999999999999999999999997 68888876
No 33
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-40 Score=362.58 Aligned_cols=418 Identities=17% Similarity=0.176 Sum_probs=304.7
Q ss_pred cccccCCCC---cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHH----HHHHHHHcCCC-
Q 009329 30 ELFTPIVPG---KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK----IIRRANDLGEN- 101 (537)
Q Consensus 30 ~~f~p~~~~---~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~k----i~~~a~~~g~~- 101 (537)
..|.|..+. .-.|.+++|+|+|.+|||||-++.+.|+|+||.|++||+|.+..|+|..|-. +.+...++|++
T Consensus 22 ~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r 101 (877)
T COG0525 22 GYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITR 101 (877)
T ss_pred CCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 467775332 2778888999999999999999999999999999999999999999999854 44444445655
Q ss_pred -----------hHHHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeecceeecCCCC--
Q 009329 102 -----------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-- 165 (537)
Q Consensus 102 -----------~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s---~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~-- 165 (537)
+.++.+++.+.+.+.|++||++.+-...|-| .....+++.|-+|+++|+||+.+.-|.+|+.+-
T Consensus 102 ~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TA 181 (877)
T COG0525 102 HDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTA 181 (877)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccc
Confidence 5789999999999999999998532223333 677889999999999999999999999998741
Q ss_pred ---------------------------------------------------CCCCCCcchhch----------------h
Q 009329 166 ---------------------------------------------------PNYGRLSGQRLE----------------N 178 (537)
Q Consensus 166 ---------------------------------------------------~~yG~ls~~~l~----------------~ 178 (537)
++|-.|-++.+. +
T Consensus 182 iSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD 261 (877)
T COG0525 182 ISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVD 261 (877)
T ss_pred hhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcccC
Confidence 011111110000 0
Q ss_pred hhcCCCccccccccCCccceeccc--------------------------------------------------------
Q 009329 179 NRAGERVAVDSRKRNPADFALWKA-------------------------------------------------------- 202 (537)
Q Consensus 179 ~~~g~~~~~~~~k~~~~df~lwk~-------------------------------------------------------- 202 (537)
+.-|..+-.-+.-.++.||.+|++
T Consensus 262 ~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~ 341 (877)
T COG0525 262 PEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVG 341 (877)
T ss_pred CcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCc
Confidence 000000000000001111111110
Q ss_pred -------------------------------ccCC-----------------------CCccccCCCCCCCchhh-hhHH
Q 009329 203 -------------------------------AKAG-----------------------EPSWDSPWGPGRPGWHI-ECSA 227 (537)
Q Consensus 203 -------------------------------~~~g-----------------------~~~w~~~wG~g~PgWhi-ecs~ 227 (537)
.+.| .+++..-||...|.|.. +|..
T Consensus 342 ~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~ 421 (877)
T COG0525 342 HCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGN 421 (877)
T ss_pred cccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCc
Confidence 0011 23344569999999987 5521
Q ss_pred H--------------------------------HHhh-----cCC-----------CeeEEEecccCcCccchhhHHHhh
Q 009329 228 M--------------------------------SAHY-----LSS-----------KFDIHGGGIDLIFPHHENEIAQSC 259 (537)
Q Consensus 228 m--------------------------------~~~~-----~g~-----------~~dih~~G~Dl~f~H~~~~~a~~~ 259 (537)
. ++.. +|+ |.++.+.|.|++||+....+.++.
T Consensus 422 v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~ 501 (877)
T COG0525 422 VVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGL 501 (877)
T ss_pred EEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHH
Confidence 0 1111 121 678999999999999888888887
Q ss_pred hccC-CCCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHH
Q 009329 260 AACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIY 336 (537)
Q Consensus 260 a~~~-~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~ 336 (537)
.+.+ .||..+++ ||+|.. +|+|||||+||+|.|.|++++||+|+|||++++. +.++|++|+++.++...|...++|
T Consensus 502 ~~~~~~PFk~V~i-hGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlW 580 (877)
T COG0525 502 HLTGEVPFKDVYI-HGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLW 580 (877)
T ss_pred HhcCCCCccEEEE-eeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHH
Confidence 7777 47787755 599998 8999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHHhcCccccC----CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHH--HHHHHHhhhcccCc
Q 009329 337 QTLQDCEVALSPFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQP 410 (537)
Q Consensus 337 ~~~~~~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~--~~N~~~~~~~~~~~ 410 (537)
|+.+.+...+...... ......++|++..++++...+.++| ++|++..|... |++|+- .+++|++-.++...
T Consensus 581 Na~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~-ly~F~W~~fcD~YlEl~K~~l~ 658 (877)
T COG0525 581 NATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARA-LYEFIWNDFCDWYLELAKPRLY 658 (877)
T ss_pred hHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHhHHHHHHHHHHHhhhhhc
Confidence 9987766544332211 1113678999999999999999999 89999999999 999984 46888887764322
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHHH
Q 009329 411 KQQQLSLIESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQLKD 452 (537)
Q Consensus 411 ~~~~~~~~~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~~~ 452 (537)
.. ...+.+....+..+|..++.+| .|+|. -++++|+.+..
T Consensus 659 ~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPf-iTEei~q~l~~ 699 (877)
T COG0525 659 GG-EEEKRAARATLYYVLDTLLRLLHPFMPF-ITEEIWQKLPG 699 (877)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHhCCCCcc-chHHHHHhcCC
Confidence 22 2233345566778888999999 48998 78999988754
No 34
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-39 Score=373.12 Aligned_cols=405 Identities=14% Similarity=0.156 Sum_probs=279.0
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH-----cCCC------------h
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-----LGEN------------P 102 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~-----~g~~------------~ 102 (537)
-.|+...|+++|.+||||++++++.|+++||.|++|++|.|+.|+|++|..+....++ .|.+ +
T Consensus 50 f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~ 129 (1052)
T PRK14900 50 FSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERV 129 (1052)
T ss_pred EEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHH
Confidence 4555556777799999999999999999999999999999999999999988665433 2433 3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccc---hhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCC-------CC----
Q 009329 103 LSLSNRYCQEYLVDMADLQCLPPTYQPR---VSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------NY---- 168 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~l~i~~~~~~~r---~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~-------~y---- 168 (537)
.+++++|.+.+.+.|++||+..+-..++ ..+|...++.+|.+|.++|++|+....|+||+.+-. .|
T Consensus 130 ~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~ 209 (1052)
T PRK14900 130 WAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAH 209 (1052)
T ss_pred HHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCC
Confidence 4588999999999999999984322223 227899999999999999999999999999987510 01
Q ss_pred -CC---------------------------------------------------Ccchh---c-----hhhhcCCCcc-c
Q 009329 169 -GR---------------------------------------------------LSGQR---L-----ENNRAGERVA-V 187 (537)
Q Consensus 169 -G~---------------------------------------------------ls~~~---l-----~~~~~g~~~~-~ 187 (537)
|. +.+.. + -++..|..+- .
T Consensus 210 ~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~ 289 (1052)
T PRK14900 210 QGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKV 289 (1052)
T ss_pred CCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEe
Confidence 00 00000 0 0000011000 0
Q ss_pred cccccCCcccee------------------------------------------------------------ccc-----
Q 009329 188 DSRKRNPADFAL------------------------------------------------------------WKA----- 202 (537)
Q Consensus 188 ~~~k~~~~df~l------------------------------------------------------------wk~----- 202 (537)
.+ ..++.||.+ |+.
T Consensus 290 ~P-ahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie 368 (1052)
T PRK14900 290 TP-AHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILE 368 (1052)
T ss_pred cC-CCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEE
Confidence 00 000001100 000
Q ss_pred --------------------------------------------ccCCCCccccCCCCCCCchhhh--------------
Q 009329 203 --------------------------------------------AKAGEPSWDSPWGPGRPGWHIE-------------- 224 (537)
Q Consensus 203 --------------------------------------------~~~g~~~w~~~wG~g~PgWhie-------------- 224 (537)
.++-.+++...||.+.|.|+++
T Consensus 369 ~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~~ 448 (1052)
T PRK14900 369 PLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEAC 448 (1052)
T ss_pred EEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCcEEecccccccc
Confidence 0011234566799999999743
Q ss_pred --hH--------------------HHHHhhcC-----------CCeeEEEecccCcCccchhhHHHhhhccCC-CCceEE
Q 009329 225 --CS--------------------AMSAHYLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYW 270 (537)
Q Consensus 225 --cs--------------------~m~~~~~g-----------~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~ 270 (537)
|. .++. +| +|.|+|++|+|++++|....++....+.+. ||.+++
T Consensus 449 ~~~~~~~~~~~~dVlDvWFdS~l~y~s~--~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~ 526 (1052)
T PRK14900 449 STCGKAELRQDEDVLDTWFSSGLWPFST--MGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVY 526 (1052)
T ss_pred cccCccceecCCceEEEEEcCChHHHHH--HcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeE
Confidence 10 0010 11 267999999999875443333333333344 556674
Q ss_pred EEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009329 271 MHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP 348 (537)
Q Consensus 271 ~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~ 348 (537)
.||||+. +|+|||||+||+|+|.|++++||+|++||||++. ++++|++||++.+....+.+.+|+|+.+.+...+..
T Consensus 527 -~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~ 605 (1052)
T PRK14900 527 -LHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSG 605 (1052)
T ss_pred -ecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4699998 9999999999999999999999999999999986 899999999999988777777888854333222222
Q ss_pred cc-cC-----CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHHH
Q 009329 349 FQ-EH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIES 420 (537)
Q Consensus 349 ~~-~~-----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~~ 420 (537)
.. .. ......|++++..+..+...+.++| ++|++..|+.. +++|+ ..+|+|++..+++........+...
T Consensus 606 ~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~ 683 (1052)
T PRK14900 606 YQERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANA-VYAFVWHELCDWYIELAKEALASEDPEARRSV 683 (1052)
T ss_pred cCcccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHhhhHHHHHhccHhhccCCHHHHHHH
Confidence 11 00 0113457899999999999999999 99999999999 99997 5889999987764211111112223
Q ss_pred HHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 421 LRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 421 l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
...+..+|+.++.+|- |+|. .++++|+.+.
T Consensus 684 ~~~L~~~L~~l~~LLaPfmP~-~aEeiw~~L~ 714 (1052)
T PRK14900 684 QAVLVHCLQTSYRLLHPFMPF-ITEELWHVLR 714 (1052)
T ss_pred HHHHHHHHHHHHHHHHhHhHH-HHHHHHHHhc
Confidence 4455667777777774 8888 7899998875
No 35
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.5e-41 Score=345.75 Aligned_cols=275 Identities=21% Similarity=0.235 Sum_probs=200.6
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHc-CCCh----------------
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GENP---------------- 102 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~-g~~~---------------- 102 (537)
-.+....|||||++||||+|+++++|+++|+++++|++|.|++|+||||.+|..+|.+. |.++
T Consensus 3 f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~ 82 (338)
T cd00818 3 FVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKC 82 (338)
T ss_pred eEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHH
Confidence 34556679999999999999999999999999999999999999999999999888775 7664
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCC---CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--CCC----CCCCcc
Q 009329 103 LSLSNRYCQEYLVDMADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SPN----YGRLSG 173 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~l~i~~~---~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--~~~----yG~ls~ 173 (537)
++++++|++.|.+++++|||..+ ...+..++|++.++++|.+|+++|++|++++.|||.+.. .+. +..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~ 162 (338)
T cd00818 83 REFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKD 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHH
Confidence 79999999999999999999643 233444599999999999999999999999999993221 111 121211
Q ss_pred hhchhhhcCCCccccccccCCccceecc-cccCCCCccccCCCCCCCchhhh-hH--------------------HHHHh
Q 009329 174 QRLENNRAGERVAVDSRKRNPADFALWK-AAKAGEPSWDSPWGPGRPGWHIE-CS--------------------AMSAH 231 (537)
Q Consensus 174 ~~l~~~~~g~~~~~~~~k~~~~df~lwk-~~~~g~~~w~~~wG~g~PgWhie-cs--------------------~m~~~ 231 (537)
.-++.+ .....-.+..+. .+.-|- ..++-.++++..||.+.|.|.++ |+ .++..
T Consensus 163 ~l~~~~-~~~~~~P~~~~~---~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~ 238 (338)
T cd00818 163 RLLEAN-DKVNWIPEWVKN---RFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL 238 (338)
T ss_pred HHHHHH-hcCcEECHHHHH---HHHHHHhcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc
Confidence 111111 110000000010 111121 12233467788999999987553 30 11111
Q ss_pred -h------cC--CCeeEEEecccCcC--ccchhhHHHhhhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHHh
Q 009329 232 -Y------LS--SKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 232 -~------~g--~~~dih~~G~Dl~f--~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~ 299 (537)
+ |. .+.|+++.|+|+++ +|...+++.. +.+..+|.++++| |+++. +|+|||||+||+|++.|+++.
T Consensus 239 ~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~h-g~~~~~~g~KmSKS~gn~i~~~~~~~~ 316 (338)
T cd00818 239 HYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVH-GFVLDEDGRKMSKSLGNYVDPQEVVDK 316 (338)
T ss_pred CCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEE-eeEECCCCCCCCCCCCCcCCHHHHHHH
Confidence 1 11 36789999999997 6777777654 2334567888776 77765 899999999999999999999
Q ss_pred cChhhHHHHHhhc-CCCCCccc
Q 009329 300 YHPLALRHFLISA-HYRSPLNY 320 (537)
Q Consensus 300 ~~~d~lR~~ll~~-~~~~~~~f 320 (537)
|++|++||||++. +..+|++|
T Consensus 317 ~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 317 YGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred cCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999997 68888876
No 36
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.1e-39 Score=367.45 Aligned_cols=402 Identities=16% Similarity=0.168 Sum_probs=282.9
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHH----HHHHcCCC------------hHH
Q 009329 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR----RANDLGEN------------PLS 104 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~----~a~~~g~~------------~~~ 104 (537)
.+..+.|+|+|.+||||++++++.|+++||.|++||+|.|+.|+|.+|-++.. .+.+.|++ +.+
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 34444577789999999999999999999999999999999999999987755 34444654 456
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeecceeecCCCC----------------
Q 009329 105 LSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS---------------- 165 (537)
Q Consensus 105 ~~~~~~~~~~~~l~~l~i~~~~~~~r~s---~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~---------------- 165 (537)
++++|.+.+.+.+++||+..+-..++.| ++...++..|.+|.++|++|++...|+||+.+-
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~ 250 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGT 250 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhccccccc
Confidence 7799999999999999997432223333 788899999999999999999999999998841
Q ss_pred ------C--C------------------------------C----CC-----Cc-chhch-------hhhcCCCcc-ccc
Q 009329 166 ------P--N------------------------------Y----GR-----LS-GQRLE-------NNRAGERVA-VDS 189 (537)
Q Consensus 166 ------~--~------------------------------y----G~-----ls-~~~l~-------~~~~g~~~~-~~~ 189 (537)
+ + | |+ +. ++.+- ++..|..+- ..+
T Consensus 251 ~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~P 330 (958)
T PLN02943 251 LYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISP 330 (958)
T ss_pred EEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCC
Confidence 0 0 0 00 00 00000 000010000 000
Q ss_pred cccCCccce--------------------------------------------------------ecccc----------
Q 009329 190 RKRNPADFA--------------------------------------------------------LWKAA---------- 203 (537)
Q Consensus 190 ~k~~~~df~--------------------------------------------------------lwk~~---------- 203 (537)
..++.||. -|+..
T Consensus 331 -ahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~Q 409 (958)
T PLN02943 331 -GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQ 409 (958)
T ss_pred -CCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccc
Confidence 00000000 01000
Q ss_pred ---------------------------------------cCCCCccccCCCCCCCchhhh---hHH--------------
Q 009329 204 ---------------------------------------KAGEPSWDSPWGPGRPGWHIE---CSA-------------- 227 (537)
Q Consensus 204 ---------------------------------------~~g~~~w~~~wG~g~PgWhie---cs~-------------- 227 (537)
++-.+++...||.+.|.|+++ |+.
T Consensus 410 WFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~ 489 (958)
T PLN02943 410 WFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEK 489 (958)
T ss_pred eeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHH
Confidence 011134456799999999963 321
Q ss_pred ----------HH--Hh--------------hcC------------CCeeEEEecccCcCccchhhHHHhhhc----cCC-
Q 009329 228 ----------MS--AH--------------YLS------------SKFDIHGGGIDLIFPHHENEIAQSCAA----CQD- 264 (537)
Q Consensus 228 ----------m~--~~--------------~~g------------~~~dih~~G~Dl~f~H~~~~~a~~~a~----~~~- 264 (537)
+. .. .+| .|.|+++.|+|++|+ |++.+.+. .++
T Consensus 490 ~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~f----W~a~m~~~~~~~~~~~ 565 (958)
T PLN02943 490 AREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFF----WVARMVMMGIEFTGTV 565 (958)
T ss_pred hhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHH----HHHHHHHhhhhhcCCC
Confidence 00 00 012 267899999999875 56554333 344
Q ss_pred CCceEEEEeeeee-eCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Q 009329 265 SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCE 343 (537)
Q Consensus 265 ~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~ 343 (537)
||.++|+| |+++ .+|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+.+..+.+.+|+++.+.+.
T Consensus 566 Pf~~v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~ 644 (958)
T PLN02943 566 PFSYVYLH-GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVL 644 (958)
T ss_pred ChheEEEe-ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889887 6766 599999999999999999999999999999999998899999999999998888888998776665
Q ss_pred HhcCcc-------------ccCC----CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHH--HHHHHHHhh
Q 009329 344 VALSPF-------------QEHG----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNM 404 (537)
Q Consensus 344 ~~l~~~-------------~~~~----~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~ 404 (537)
..+... .... .....|+|++..++.+.+.+.++| +++++..|+.. +++|+ ...|.|++.
T Consensus 645 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~d~YiE~ 722 (958)
T PLN02943 645 QNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGRE-IYDFFWSDFADWYIEA 722 (958)
T ss_pred hccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHH-HHHHHHHHHHHHHHHh
Confidence 433210 0000 112357899999999999999999 99999999999 99995 788999998
Q ss_pred hcccCchhh-hHHHHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHH
Q 009329 405 LKKKQPKQQ-QLSLIESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQLK 451 (537)
Q Consensus 405 ~~~~~~~~~-~~~~~~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~~ 451 (537)
.+++..... ...+......+..++..++.+| .|+|. .++++|+.+.
T Consensus 723 ~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPf-itEELwq~L~ 770 (958)
T PLN02943 723 SKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPF-VTEELWQALP 770 (958)
T ss_pred ccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchh-HHHHHHHHcC
Confidence 887532111 1122333445556777888888 48888 7899999884
No 37
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-38 Score=364.34 Aligned_cols=408 Identities=17% Similarity=0.200 Sum_probs=284.9
Q ss_pred CcceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHc------CCChH------
Q 009329 38 GKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL------GENPL------ 103 (537)
Q Consensus 38 ~~v~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~------g~~~~------ 103 (537)
++-++++..|.|| |.+||||++++++.|+++||.+++|++|.|+.|+|.||.+|..++.++ +.++.
T Consensus 47 ~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c 126 (912)
T PRK05743 47 GKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKC 126 (912)
T ss_pred CCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHH
Confidence 4444555544455 999999999999999999999999999999999999999999999774 56665
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCC-------CCCC--
Q 009329 104 -SLSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------NYGR-- 170 (537)
Q Consensus 104 -~~~~~~~~~~~~~l~~l~i~~~-~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~-------~yG~-- 170 (537)
++++++.+.+.+.+++||+..+ +....|. +|...++.+|.+|.++|++|++...|+||+.+-. .|+.
T Consensus 127 ~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~ 206 (912)
T PRK05743 127 REYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKT 206 (912)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccccc
Confidence 5999999999999999999532 2222232 7889999999999999999999999999988510 0100
Q ss_pred ---------C--------------------------------cchh-----------c----------------------
Q 009329 171 ---------L--------------------------------SGQR-----------L---------------------- 176 (537)
Q Consensus 171 ---------l--------------------------------s~~~-----------l---------------------- 176 (537)
+ .+.. .
T Consensus 207 s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 286 (912)
T PRK05743 207 SPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVL 286 (912)
T ss_pred CceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEE
Confidence 0 0000 0
Q ss_pred -----hhhhcCC-----------------Ccccccc--------ccCCcccee---------------------------
Q 009329 177 -----ENNRAGE-----------------RVAVDSR--------KRNPADFAL--------------------------- 199 (537)
Q Consensus 177 -----~~~~~g~-----------------~~~~~~~--------k~~~~df~l--------------------------- 199 (537)
.++ .|. .|+.+.. ...+.||.+
T Consensus 287 ~~~~G~~l-~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~G 365 (912)
T PRK05743 287 ATFKGKEL-EGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAG 365 (912)
T ss_pred EEechHhh-cCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCC
Confidence 000 000 0000000 000011111
Q ss_pred ---------------------------------ccccc------------------------------------------
Q 009329 200 ---------------------------------WKAAK------------------------------------------ 204 (537)
Q Consensus 200 ---------------------------------wk~~~------------------------------------------ 204 (537)
|+..+
T Consensus 366 l~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~ 445 (912)
T PRK05743 366 LFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIE 445 (912)
T ss_pred cCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHHH
Confidence 11000
Q ss_pred -------CCCCccccCCCCCCCchhhh-hH-------HH------------------------H---Hhh----------
Q 009329 205 -------AGEPSWDSPWGPGRPGWHIE-CS-------AM------------------------S---AHY---------- 232 (537)
Q Consensus 205 -------~g~~~w~~~wG~g~PgWhie-cs-------~m------------------------~---~~~---------- 232 (537)
+-.+++..-||.+.|.|+.+ |. .. . ..+
T Consensus 446 ~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvW 525 (912)
T PRK05743 446 SMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVW 525 (912)
T ss_pred HHHhcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhh
Confidence 00123344699999998752 20 00 0 000
Q ss_pred ----------------cCCCeeEEEecccCcC--ccchhhHHHhhhccCCCCceEEEEeeeeee-CCccccccCCCcccH
Q 009329 233 ----------------LSSKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTI 293 (537)
Q Consensus 233 ----------------~g~~~dih~~G~Dl~f--~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~ 293 (537)
...|.|+|.+|+|+++ +|+..+++... .+..||.++ +.|||++. +|+|||||+||+|+|
T Consensus 526 fdSg~s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~v-l~HG~vld~~G~KMSKSlGNvIdP 603 (912)
T PRK05743 526 FDSGSSHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQV-LTHGFTVDGKGRKMSKSLGNVIDP 603 (912)
T ss_pred hhhCCCHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHHh-cCCCcccee-EEeeeEECCCCCCCCCCCCCcCCH
Confidence 1247899999999997 45666666554 233466666 55699997 999999999999999
Q ss_pred hHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------CCCCCCChHHHHHHH
Q 009329 294 RQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCIN 367 (537)
Q Consensus 294 ~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~------~~~~~~~~~l~~~l~ 367 (537)
.+++++||+|++|||++++++++|++||++.+.+..+.+.+|+++++.+.+.+...... ......|++++..++
T Consensus 604 ~~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~ 683 (912)
T PRK05743 604 QDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLA 683 (912)
T ss_pred HHHHHhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777888888876665544332110 011345789999999
Q ss_pred HHHHHHHHHHhhccChhhhhHHHHHHHH--HHHHHHHhhhccc--CchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCC
Q 009329 368 KLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKK--QPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGA 442 (537)
Q Consensus 368 ~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~ 442 (537)
++.+.+.++| ++|+++.|+.. |++|+ ...|.|++..+++ ...+....+......+..+|..++.+|. |+|. .
T Consensus 684 ~~~~~v~~~~-e~~~f~~a~~~-l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~-~ 760 (912)
T PRK05743 684 ELQEEILEAY-ENYDFHKVYQK-LHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSF-T 760 (912)
T ss_pred HHHHHHHHHH-HhcCHHHHHHH-HHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-H
Confidence 9999999999 99999999999 99999 4568898887763 2221222222223344556666777774 8887 7
Q ss_pred hHHHHHHHH
Q 009329 443 YSEVLQQLK 451 (537)
Q Consensus 443 ~~~~~~~~~ 451 (537)
++++|+.+.
T Consensus 761 aEelw~~l~ 769 (912)
T PRK05743 761 AEEIWQYLP 769 (912)
T ss_pred HHHHHHhcc
Confidence 899998883
No 38
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.5e-38 Score=355.48 Aligned_cols=385 Identities=17% Similarity=0.197 Sum_probs=275.6
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009329 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
++|+|++.|| |.+||||+++++++|+++||+|++|++|.|++|+|+||.+|+.+|.+.|.+|.+++++|.+.+.+.|+
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~ 112 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK 112 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5677664455 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCC--Cccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC-------------CCCCCCC----------
Q 009329 119 DLQCLPPT--YQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGRL---------- 171 (537)
Q Consensus 119 ~l~i~~~~--~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~-------------~~~yG~l---------- 171 (537)
+||+.. | .+.+++ +|.+.++++|.+|.++|++|++...|+||+.+ |+.||..
T Consensus 113 ~lGi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f 191 (805)
T PRK00390 113 SLGFSY-DWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWF 191 (805)
T ss_pred HhCCcc-cCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceee
Confidence 999984 4 334443 79999999999999999999999999999884 2333310
Q ss_pred ---cc--------------------------------hhch-hhh-----------------------------------
Q 009329 172 ---SG--------------------------------QRLE-NNR----------------------------------- 180 (537)
Q Consensus 172 ---s~--------------------------------~~l~-~~~----------------------------------- 180 (537)
+. ..+. .+.
T Consensus 192 ~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~ 271 (805)
T PRK00390 192 LKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLA 271 (805)
T ss_pred EecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhh
Confidence 00 0000 000
Q ss_pred --------------------------------cCCC-----------------ccccc--------cccCCccceecccc
Q 009329 181 --------------------------------AGER-----------------VAVDS--------RKRNPADFALWKAA 203 (537)
Q Consensus 181 --------------------------------~g~~-----------------~~~~~--------~k~~~~df~lwk~~ 203 (537)
.|.. |+.+. ...++.||.+++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 351 (805)
T PRK00390 272 EQNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKY 351 (805)
T ss_pred cchHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHc
Confidence 0000 00000 00001122222100
Q ss_pred -----------------------cC----------------------------C-------------CCccccCCCCCCC
Q 009329 204 -----------------------KA----------------------------G-------------EPSWDSPWGPGRP 219 (537)
Q Consensus 204 -----------------------~~----------------------------g-------------~~~w~~~wG~g~P 219 (537)
.. | .+++..-||.+.|
T Consensus 352 ~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIP 431 (805)
T PRK00390 352 GLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIP 431 (805)
T ss_pred CCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCcee
Confidence 00 0 1234446999999
Q ss_pred chhh-hhHH------------------------------------------H------------HHhh---cC-------
Q 009329 220 GWHI-ECSA------------------------------------------M------------SAHY---LS------- 234 (537)
Q Consensus 220 gWhi-ecs~------------------------------------------m------------~~~~---~g------- 234 (537)
-||. +|.. + |+.+ ++
T Consensus 432 i~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~ 511 (805)
T PRK00390 432 IIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEA 511 (805)
T ss_pred EEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccC
Confidence 8874 3311 0 0000 11
Q ss_pred ----------CCeeEEEecccCcCccchhh---HHHhh--h-ccC-CCCceEEEEeeeeeeCCccccccCCCcccHhHHH
Q 009329 235 ----------SKFDIHGGGIDLIFPHHENE---IAQSC--A-ACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQIT 297 (537)
Q Consensus 235 ----------~~~dih~~G~Dl~f~H~~~~---~a~~~--a-~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll 297 (537)
.|+|+..+|.|++.-|..+. ...+. + ..+ .|+.++ +||||| |||||+||+|+|.+++
T Consensus 512 ~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v-~~~G~v-----KMSKS~GN~i~p~~~i 585 (805)
T PRK00390 512 PFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKL-LTQGMV-----KMSKSKGNVVDPDDII 585 (805)
T ss_pred cCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhh-eecCcE-----EeCCCCCCCCCHHHHH
Confidence 36899999999653333221 11111 1 123 455665 899999 9999999999999999
Q ss_pred HhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHH
Q 009329 298 ERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376 (537)
Q Consensus 298 ~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~a 376 (537)
++||+|++|||+++. +++++++|+++.+.++.+.+.+|++++....+..... .......|++++..+.++...+.++
T Consensus 586 ~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~--~~~~~~~D~~il~~l~~~i~~v~~~ 663 (805)
T PRK00390 586 EKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGAL--DVAALSEDKELRRKLHKTIKKVTED 663 (805)
T ss_pred HHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhccccc--CcccChhhHHHHHHHHHHHHHHHHH
Confidence 999999999999985 9999999999999999999999998876632222111 0112346789999999999999999
Q ss_pred HhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 377 m~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
| ++|++..|++. |++|+..+++|+... ....+..++..++.+|. |+|. .++++|+.+.
T Consensus 664 ~-e~~~f~~ai~~-l~~f~n~lsk~~~~~--------------~~~~l~~~l~~l~~lLaPf~P~-iaEElw~~L~ 722 (805)
T PRK00390 664 I-ERLRFNTAIAA-LMELVNALYKAEDEQ--------------DKAVLREALEILVRLLAPFAPH-LAEELWEKLG 722 (805)
T ss_pred H-HcCCHHHHHHH-HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHcC
Confidence 9 78999999999 999999999987210 11234566777778885 7777 6888888763
No 39
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-37 Score=333.22 Aligned_cols=362 Identities=17% Similarity=0.116 Sum_probs=277.4
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHH---------------------
Q 009329 36 VPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR--------------------- 94 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~--------------------- 94 (537)
.+.+|.+-.++|+|.||+||||+|++|+||+|+|+|++.||+|.-.+.++|+|..+-.-
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchH
Confidence 35699999999999999999999999999999999999999999999999997532111
Q ss_pred -----------HHH-cCCC--------------------hHHHHHHHHHHHHHHHHHcCCCCCCCccchh--hhHHHHHH
Q 009329 95 -----------AND-LGEN--------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKD 140 (537)
Q Consensus 95 -----------a~~-~g~~--------------------~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s--~~~~~~~~ 140 (537)
+.+ .+.+ |+.+++.....|.++|++|||. .|.+...+ .+-..+.+
T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~-fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVK-FDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcc-cceeeccchhhhcccHHH
Confidence 000 0110 1237788889999999999998 46664333 34446889
Q ss_pred HHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCc
Q 009329 141 MITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPG 220 (537)
Q Consensus 141 ~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~Pg 220 (537)
+++.|.++|++|+.+|..+.+..++..+|. +.|.++-|+ +|...|-++
T Consensus 274 vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd-----------------------~~~~vl~KS--DGt~lY~t~------- 321 (577)
T COG0018 274 VVEDLEEKGLLYEDDGALVVDLLKFKKFGD-----------------------DKDRVLQKS--DGTYLYFTR------- 321 (577)
T ss_pred HHHHHHhcCCEeeeCCeEEEehhhhhhcCC-----------------------CCCeEEEEc--CCCeeeehh-------
Confidence 999999999999988988877654432322 124444443 343322221
Q ss_pred hhhhhHHHHHhh-cCCCeeEEEecccCcCccchhhHHHhhh----ccCCCCceEEEEeeeeee---CCccccccCCCccc
Q 009329 221 WHIECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQSCA----ACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFT 292 (537)
Q Consensus 221 Whiecs~m~~~~-~g~~~dih~~G~Dl~f~H~~~~~a~~~a----~~~~~~~~~~~h~g~v~~---~G~KMSKS~Gn~i~ 292 (537)
-|+| ...++ .|....|.+.|.| || ..+.|..+ ++..+.....+|.++-++ +|.||||+.|++|+
T Consensus 322 -DIAy--~~~K~~~~~d~~IyV~gad----q~-~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vt 393 (577)
T COG0018 322 -DIAY--HLYKFERGFDKLIYVLGAD----QH-GHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVT 393 (577)
T ss_pred -HHHH--HHHHHhcCCCEEEEEeCCc----ch-hHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEE
Confidence 1222 22333 6777889999999 77 55666554 222222245678777666 56799999999999
Q ss_pred HhHHHHhcC----------------------hhhHHHHHhhcCCCCCcccCHHHHHHHHH-HHHHHHHHHHHHHHhcCcc
Q 009329 293 IRQITERYH----------------------PLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALSPF 349 (537)
Q Consensus 293 ~~dll~~~~----------------------~d~lR~~ll~~~~~~~~~fs~~~l~~~~~-~l~~l~~~~~~~~~~l~~~ 349 (537)
++|+++..+ .+++||++++.+..++++|+|+.+.+..+ +..|+||+++|++++++++
T Consensus 394 l~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka 473 (577)
T COG0018 394 LDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKA 473 (577)
T ss_pred HHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhc
Confidence 999999888 99999999999999999999999998775 7889999999999999887
Q ss_pred ccCC----------CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchh--hhHHH
Q 009329 350 QEHG----------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ--QQLSL 417 (537)
Q Consensus 350 ~~~~----------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~--~~~~~ 417 (537)
.... ...+.+.+|+..+.+++..+.+|. +++ .|+.|+.||++|+..||+||+.|++..... ...+|
T Consensus 474 ~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~-~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aR 551 (577)
T COG0018 474 GEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EEL-EPHRLANYLYDLAGSFNSFYNACPVLGAENEELRAAR 551 (577)
T ss_pred cccccccccccchhccChHHHHHHHHHHHhHHHHHHHH-Hhc-CchHHHHHHHHHHHHHHHHHhhCCcCCCCcHHHHHHH
Confidence 5211 111234778899999999999997 666 599999999999999999999999987533 35689
Q ss_pred HHHHHHHHHHHHHHHhhcccCCC
Q 009329 418 IESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 418 ~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
+.++.++..+|+++|.+|||.++
T Consensus 552 L~L~~a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 552 LALVKATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999764
No 40
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=1.3e-37 Score=340.35 Aligned_cols=369 Identities=16% Similarity=0.108 Sum_probs=274.2
Q ss_pred CCCccccccCC--CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHH---HH---
Q 009329 26 TQQKELFTPIV--PGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA---ND--- 97 (537)
Q Consensus 26 ~~~~~~f~p~~--~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a---~~--- 97 (537)
++..+.|-+.. +.+|.++.|+|||+|++||||+|+++++|+|+|+|++.||+|.-.+.+.|+|..+-.-+ .+
T Consensus 98 ~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~ 177 (566)
T TIGR00456 98 LTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGN 177 (566)
T ss_pred HhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCC
Confidence 34445564333 34899999999999999999999999999999999999999999999999875321110 00
Q ss_pred -------------------------------------------cCCC-----hHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 009329 98 -------------------------------------------LGEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQP 129 (537)
Q Consensus 98 -------------------------------------------~g~~-----~~~~~~~~~~~~~~~l~~l~i~~~~~~~ 129 (537)
.|.+ |+.+++...+.|.++|++|||.+ |.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~f-D~~~ 256 (566)
T TIGR00456 178 EKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHF-DSFV 256 (566)
T ss_pred ccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeee
Confidence 0111 35677888899999999999984 6554
Q ss_pred --chhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCC
Q 009329 130 --RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGE 207 (537)
Q Consensus 130 --r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~ 207 (537)
..+.+...+.++++.|.++|++|+. |.+|++... +|. ++.|.++-|+ +|.
T Consensus 257 ~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~---~~d----------------------~~~~~vl~ks--DGt 308 (566)
T TIGR00456 257 WEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTL---FGD----------------------KDKDRVLQKS--DGT 308 (566)
T ss_pred ccccccccccHHHHHHHHHHCCCEEEc-CCEEEEccc---ccC----------------------CCCCeEEEEC--CCC
Confidence 3334455678999999999999977 888886532 221 0014445443 454
Q ss_pred CccccCCCCCCCchhhhhHHHHHhhc-CCCeeEEEecccCcCccchhhH---HHhhhccCCCCceEEEEeeeeeeCCccc
Q 009329 208 PSWDSPWGPGRPGWHIECSAMSAHYL-SSKFDIHGGGIDLIFPHHENEI---AQSCAACQDSNVSYWMHNGHVTNNNEKM 283 (537)
Q Consensus 208 ~~w~~~wG~g~PgWhiecs~m~~~~~-g~~~dih~~G~Dl~f~H~~~~~---a~~~a~~~~~~~~~~~h~g~v~~~G~KM 283 (537)
++|.+. -|+ +...++- +....|.+.|.| |+.... +.+++++..++.++ .|++|.+++|.||
T Consensus 309 ~~Y~t~--------DiA--~~~~k~~~~~d~iI~V~g~~----q~~h~~~v~~~l~~lG~~~~~~l-~h~~~~~V~~~km 373 (566)
T TIGR00456 309 YLYLTR--------DIA--YHLDKLERGFDKMIYVWGSD----HHLHIAQFFAILEKLGFYKKKEL-IHLNFGMVPLGSM 373 (566)
T ss_pred ceechh--------hHH--HHHHHHhcCCCEEEEEecCc----HHHHHHHHHHHHHHcCCCCCCce-EEEEEEEEECCCC
Confidence 433331 122 2222221 556778888889 764433 22344443444455 8889999999999
Q ss_pred cccCCCcccHh-----------------------HHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHH-HHHHHHHHH
Q 009329 284 SKSLGNFFTIR-----------------------QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTL 339 (537)
Q Consensus 284 SKS~Gn~i~~~-----------------------dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~-~l~~l~~~~ 339 (537)
|||+||+|++. ++++.++.|++||++|+....++++|+++.+.+... ...+++|++
T Consensus 374 Skr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~ 453 (566)
T TIGR00456 374 KTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAH 453 (566)
T ss_pred CccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHH
Confidence 99999999998 666678899999999999889999999999877643 466999999
Q ss_pred HHHHHhcCccccCCC---------CCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCc
Q 009329 340 QDCEVALSPFQEHGK---------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410 (537)
Q Consensus 340 ~~~~~~l~~~~~~~~---------~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~ 410 (537)
+|+++++++...... .++.+..|...+..+++.+.+++ ++++++.++.. ++++++.+|+||+.++++..
T Consensus 454 aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~-l~~La~~~N~yy~~~~Vl~~ 531 (566)
T TIGR00456 454 ARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNY-LYELASLFSSFYKACPVLDA 531 (566)
T ss_pred HHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHHHHHHhcCccCCC
Confidence 999999887642110 02234567888999999999999 89998888877 99999999999999987753
Q ss_pred h--hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009329 411 K--QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 411 ~--~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
. .....|+.++.++..+|+++|.+|||.++
T Consensus 532 ~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~ 563 (566)
T TIGR00456 532 ENENLAAARLALLKATRQTLKNGLQLLGIEPP 563 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 2 23468999999999999999999999764
No 41
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=8e-38 Score=354.11 Aligned_cols=393 Identities=18% Similarity=0.172 Sum_probs=277.9
Q ss_pred CcceEEEeC--CCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009329 38 GKVGMYVCG--VTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~g--Pt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++-++|++. |+|+|.+||||+++++++|+++||+|++||+|.|++|+|+||.+|..+|.+.|.+|.++++++.+.+.+
T Consensus 27 ~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~ 106 (842)
T TIGR00396 27 NKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKK 106 (842)
T ss_pred CCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455577775 445599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCCCCCc------
Q 009329 116 DMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLS------ 172 (537)
Q Consensus 116 ~l~~l~i~~~-~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~yG~ls------ 172 (537)
.|++||+..+ +.+.+++ +|...++.+|.+|.++|++|+++..|+||+.+ |..||.--
T Consensus 107 ~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~ 186 (842)
T TIGR00396 107 QLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELK 186 (842)
T ss_pred HHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecc
Confidence 9999999842 2344444 79999999999999999999999999999885 22233200
Q ss_pred ---------------------------------------ch----hchh----hh-------------------------
Q 009329 173 ---------------------------------------GQ----RLEN----NR------------------------- 180 (537)
Q Consensus 173 ---------------------------------------~~----~l~~----~~------------------------- 180 (537)
+. .+.. +.
T Consensus 187 ~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~ 266 (842)
T TIGR00396 187 QWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVE 266 (842)
T ss_pred eeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHH
Confidence 00 0000 00
Q ss_pred -----------------------------------cCCC-----------------ccccc--------cccCCccceec
Q 009329 181 -----------------------------------AGER-----------------VAVDS--------RKRNPADFALW 200 (537)
Q Consensus 181 -----------------------------------~g~~-----------------~~~~~--------~k~~~~df~lw 200 (537)
.|.. |..+. ...++.||.++
T Consensus 267 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~ 346 (842)
T TIGR00396 267 KIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFA 346 (842)
T ss_pred hhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHH
Confidence 0000 00000 00011233222
Q ss_pred ccc---------------------cC----------------------------C-------------CCccccCCCCCC
Q 009329 201 KAA---------------------KA----------------------------G-------------EPSWDSPWGPGR 218 (537)
Q Consensus 201 k~~---------------------~~----------------------------g-------------~~~w~~~wG~g~ 218 (537)
+.. .. | .+++..-||.+.
T Consensus 347 ~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PI 426 (842)
T TIGR00396 347 QKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPI 426 (842)
T ss_pred HHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCce
Confidence 210 00 0 123344689999
Q ss_pred Cchhhh-hHHH-------------------------------------------------------HH----hh------
Q 009329 219 PGWHIE-CSAM-------------------------------------------------------SA----HY------ 232 (537)
Q Consensus 219 PgWhie-cs~m-------------------------------------------------------~~----~~------ 232 (537)
|-||.+ |..+ |+ .|
T Consensus 427 Pi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~ 506 (842)
T TIGR00396 427 PIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNT 506 (842)
T ss_pred EEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCc
Confidence 988752 3100 00 00
Q ss_pred --------c--CCCeeEEEecccCcCccchh---hHHHhh---hccC-CCCceEEEEeeeeee-----CCc---------
Q 009329 233 --------L--SSKFDIHGGGIDLIFPHHEN---EIAQSC---AACQ-DSNVSYWMHNGHVTN-----NNE--------- 281 (537)
Q Consensus 233 --------~--g~~~dih~~G~Dl~f~H~~~---~~a~~~---a~~~-~~~~~~~~h~g~v~~-----~G~--------- 281 (537)
+ -.|+|+..+|.|++.-|..+ |...+. .+.+ .||.++ +.||||+. +|+
T Consensus 507 ~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l-~~~G~Vl~~~~~~~G~~~~~~~~~~ 585 (842)
T TIGR00396 507 DQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKL-INQGMVLGFYYPPNGKSPPDELTER 585 (842)
T ss_pred CCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHH-hccceEEeeeecCCCCccChhhhcc
Confidence 0 02789999999975444322 221211 1223 466677 66799997 788
Q ss_pred ------------------cccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 009329 282 ------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDC 342 (537)
Q Consensus 282 ------------------KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~ 342 (537)
|||||+||+|+|.+++++||+|++|||+++. +++++++|+++.+..+.+.+.+|++++..+
T Consensus 586 ~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~ 665 (842)
T TIGR00396 586 DEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNI 665 (842)
T ss_pred ccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999965 999999999999999999999999988776
Q ss_pred HHhcCccc--cCCCCCCCChHHHHHHHHHHHHHHHHHhhccC-hhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHH
Q 009329 343 EVALSPFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLN-TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIE 419 (537)
Q Consensus 343 ~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n-~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~ 419 (537)
.+.+.... ........+++++..++++...+.++| +++. +..|++. |++|+..++++...
T Consensus 666 ~~~~~~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~-e~y~~fn~ai~~-l~~f~n~L~~~~~~--------------- 728 (842)
T TIGR00396 666 LGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTEDL-EKLESFNTAISA-MMILLNALYKAKKD--------------- 728 (842)
T ss_pred HhhhcccccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHH-HHHHHHHHHhhhhH---------------
Confidence 54443210 001123457899999999999999999 6767 8999999 99999766553210
Q ss_pred HHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 420 SLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 420 ~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
..+..+|..++.+|. |.|. .++++|+.+.
T Consensus 729 --~~l~~~l~~ll~lLaPf~Ph-iaEElW~~l~ 758 (842)
T TIGR00396 729 --ALYLEYLKGFLTVLSPFAPH-LAEELWEKLG 758 (842)
T ss_pred --HHHHHHHHHHHHHHhhhhhH-HHHHHHHHhC
Confidence 124456777777775 7777 6788887763
No 42
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-37 Score=359.36 Aligned_cols=407 Identities=19% Similarity=0.208 Sum_probs=282.1
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH-cCCC----------------h
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGEN----------------P 102 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~-~g~~----------------~ 102 (537)
-.++...|+++|.+|+||++++++.|+++||.+++||+|.++.|+|.||.+|...+.+ .|.+ +
T Consensus 43 f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c 122 (975)
T PRK06039 43 FVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKC 122 (975)
T ss_pred EEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHH
Confidence 3445556777799999999999999999999999999999999999999999999976 4654 6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeecceeecCCCCC---------CCCC
Q 009329 103 LSLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP---------NYGR 170 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s---~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~---------~yG~ 170 (537)
.+++.+|.+.+.+.+++||+..+-..+..| +|.+.++..|.+|.++|++|++...|+||+.+-. .|..
T Consensus 123 ~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~ 202 (975)
T PRK06039 123 RESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKD 202 (975)
T ss_pred HHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccc
Confidence 799999999999999999986422222233 7889999999999999999999999999988510 0100
Q ss_pred -----------C--------------------------cchh----------c------------------------hhh
Q 009329 171 -----------L--------------------------SGQR----------L------------------------ENN 179 (537)
Q Consensus 171 -----------l--------------------------s~~~----------l------------------------~~~ 179 (537)
+ .+.. . .++
T Consensus 203 ~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L 282 (975)
T PRK06039 203 VKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSEL 282 (975)
T ss_pred cCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccc
Confidence 0 0000 0 000
Q ss_pred h--------c---C----------CCccccc--------cccCCccceecc-----------------------------
Q 009329 180 R--------A---G----------ERVAVDS--------RKRNPADFALWK----------------------------- 201 (537)
Q Consensus 180 ~--------~---g----------~~~~~~~--------~k~~~~df~lwk----------------------------- 201 (537)
. . + ..|+.+. ....+.||.+++
T Consensus 283 ~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~ 362 (975)
T PRK06039 283 EGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVK 362 (975)
T ss_pred cCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCHH
Confidence 0 0 0 0000000 000001111100
Q ss_pred -------------------------------cc-----------------------------------------------
Q 009329 202 -------------------------------AA----------------------------------------------- 203 (537)
Q Consensus 202 -------------------------------~~----------------------------------------------- 203 (537)
..
T Consensus 363 eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~ 442 (975)
T PRK06039 363 DADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLEN 442 (975)
T ss_pred HhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHhc
Confidence 00
Q ss_pred -cCCCCccccCCCCCCCchhhh-hHH----------------------------------------H------------H
Q 009329 204 -KAGEPSWDSPWGPGRPGWHIE-CSA----------------------------------------M------------S 229 (537)
Q Consensus 204 -~~g~~~w~~~wG~g~PgWhie-cs~----------------------------------------m------------~ 229 (537)
++-.+++..-||.+.|.|+++ |.. | |
T Consensus 443 l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdS 522 (975)
T PRK06039 443 ARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDS 522 (975)
T ss_pred CccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccccccceeec
Confidence 001123445699999999764 410 0 0
Q ss_pred H----hhcC------------CCeeEEEecccCcCccchhhHHHhhhccC-CCCceEEEEeeeeee-CCccccccCCCcc
Q 009329 230 A----HYLS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFF 291 (537)
Q Consensus 230 ~----~~~g------------~~~dih~~G~Dl~f~H~~~~~a~~~a~~~-~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i 291 (537)
. ..+| .|.|++..|+|+++++.-.....+.++.+ .||.++++ |||++. +|+|||||+||+|
T Consensus 523 g~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~-hG~Vld~~G~KMSKSlGNvI 601 (975)
T PRK06039 523 GSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLV-HGHVLDEDGQKMSKSLGNYV 601 (975)
T ss_pred CCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEE-eeeEECCCCCCcCCCCCCcC
Confidence 0 0011 26789999999877644333334444455 46777755 599987 9999999999999
Q ss_pred cHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHH-HHHHHHHHHHHHHHHHHHHHhc--Cccc---c---CCCCCCCChH
Q 009329 292 TIRQITERYHPLALRHFLISA-HYRSPLNYSVLQ-LDSASDAVFYIYQTLQDCEVAL--SPFQ---E---HGKTARINPA 361 (537)
Q Consensus 292 ~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~-l~~~~~~l~~l~~~~~~~~~~l--~~~~---~---~~~~~~~~~~ 361 (537)
+|.|++++||+|++|||+++. +.++|++||++. +....+.+.+|+|++.++..+. .... . .......|++
T Consensus 602 dP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~w 681 (975)
T PRK06039 602 DPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRW 681 (975)
T ss_pred CHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHH
Confidence 999999999999999999998 569999999999 5555667778888776654221 1110 0 0111345789
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHH-HHHHhhh--cccCchhhhHHHHHHHHHHHHHHHHHHhhcc-c
Q 009329 362 AEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NSSLNML--KKKQPKQQQLSLIESLRKIENEVKEVLRILG-L 437 (537)
Q Consensus 362 l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~-N~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i 437 (537)
++..+..+...+.++| ++|+++.|+.. |++|+..+ |.|++.. ++|...+. ..+......+..+|..++.+|. |
T Consensus 682 ils~l~~li~~v~~a~-e~y~~~~A~~~-l~~f~~~lsn~Yi~~~k~r~w~~~~~-~~~~~a~~~L~~~L~~l~~lLaPf 758 (975)
T PRK06039 682 ILSRLNSLVKEVTEAL-DNYDITKAARA-IRDFVDDLSNWYIRRSRRRFWKEEDD-PDKLAAYATLYTVLETLSRLAAPF 758 (975)
T ss_pred HHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHhhhhhccCCCc-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 89999999999 99999876 6677755 45654221 1233344556677777888884 8
Q ss_pred CCCCChHHHHHHHH
Q 009329 438 LPPGAYSEVLQQLK 451 (537)
Q Consensus 438 ~~~~~~~~~~~~~~ 451 (537)
+|. .++++|+.+.
T Consensus 759 ~Pf-~aEei~~~L~ 771 (975)
T PRK06039 759 TPF-IAEEIYQNLT 771 (975)
T ss_pred hHH-HHHHHHHhcc
Confidence 887 7889998875
No 43
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.5e-37 Score=355.79 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=165.9
Q ss_pred CCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhcC
Q 009329 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313 (537)
Q Consensus 235 ~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 313 (537)
.|.|+++-|+|+++.|.-.-.+.+.++++.+|.+.+++|||++. +|+|||||+||+|+|.+++++||+|++|||+++.+
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSP 645 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCC
Confidence 36899999999998764334455556667655555588899999 89999999999999999999999999999999875
Q ss_pred C--CCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCcc--------ccC------CCCCCCChHHHHHHHHHHHHHHHH
Q 009329 314 Y--RSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPF--------QEH------GKTARINPAAEDCINKLRDEFHAR 376 (537)
Q Consensus 314 ~--~~~~~fs~~~l~~~~-~~l~~l~~~~~~~~~~l~~~--------~~~------~~~~~~~~~l~~~l~~~~~~v~~a 376 (537)
+ .++++|+++.+.+.. +.+..++|++..+...+... .+. ......|+|+++.+..+.+.+.++
T Consensus 646 ~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~ 725 (1159)
T PLN02882 646 VVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREE 725 (1159)
T ss_pred cccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 688999999998764 45667777765554433221 000 011345789999999999999999
Q ss_pred HhhccChhhhhHHHHHHHHH-HHHHHHhhhcccCchh-hhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHH
Q 009329 377 MSDDLNTSHILTGAFQDALK-FINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 377 m~dd~n~~~al~~~L~~l~~-~~N~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
| ++|++..|+.. |++|+. ..|+|++..++|...+ ..+.+...+..+..+|..++.+|. |+|. .++++++.+..
T Consensus 726 m-e~y~f~~A~~~-I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf-~aEeI~q~L~~ 801 (1159)
T PLN02882 726 M-GAYRLYTVVPY-LVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPF-FTEVLYQNLRK 801 (1159)
T ss_pred H-HccCHHHHHHH-HHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHHhcc
Confidence 9 99999999999 999997 5799999998875422 223344556677788888888885 8888 78899998853
No 44
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=8.8e-37 Score=349.75 Aligned_cols=213 Identities=21% Similarity=0.195 Sum_probs=170.0
Q ss_pred CCeeEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHhHHHH---------hcChh
Q 009329 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE---------RYHPL 303 (537)
Q Consensus 235 ~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~---------~~~~d 303 (537)
.|.|+|..|+|++++|+......+.++.+. ||.++|+| ||++. +|+|||||+||+|+|.++++ +||+|
T Consensus 563 ~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD 641 (974)
T PLN02843 563 YPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641 (974)
T ss_pred CCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChH
Confidence 478999999999997776666676677665 77899887 78877 89999999999999999999 79999
Q ss_pred hHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-----CCCCCCChHHHHHHHHHHHHHHHHHh
Q 009329 304 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMS 378 (537)
Q Consensus 304 ~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~v~~am~ 378 (537)
++|||+++.+|++|++|+.+.+.++.+.+.+|+++++.+.+.+...... ......|++++..++++.+.+.++|
T Consensus 642 ~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay- 720 (974)
T PLN02843 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY- 720 (974)
T ss_pred HHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999887766555432110 1112357899999999999999999
Q ss_pred hccChhhhhHHHHHHH--HHHHHHHHhhhcccCchh--hhHHHHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHH
Q 009329 379 DDLNTSHILTGAFQDA--LKFINSSLNMLKKKQPKQ--QQLSLIESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQLK 451 (537)
Q Consensus 379 dd~n~~~al~~~L~~l--~~~~N~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~~ 451 (537)
++|+++.|+.. |++| ....|.|++..++|.... ....+......+..+|..++.+| .|+|. .++++|+.+.
T Consensus 721 e~y~f~~A~~~-i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf-~aEEiw~~L~ 796 (974)
T PLN02843 721 DNYQFFKIFQI-LQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPH-LAEDAWQNLP 796 (974)
T ss_pred HccCHHHHHHH-HHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcc
Confidence 99999999999 9988 568899999999875311 22223222233455666667777 48888 7899998875
No 45
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.7e-36 Score=326.77 Aligned_cols=358 Identities=14% Similarity=0.075 Sum_probs=272.0
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHH---HHHHHHc---------------
Q 009329 37 PGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI---IRRANDL--------------- 98 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki---~~~a~~~--------------- 98 (537)
+++|.+-.++|+|.|++||||+|++++||+|+|+|++.||+|.-.+.+.|+|..+ +....+.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 5689999999999999999999999999999999999999999999999998532 1111111
Q ss_pred -----------------------------CCC-----hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHH
Q 009329 99 -----------------------------GEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQ 144 (537)
Q Consensus 99 -----------------------------g~~-----~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~ 144 (537)
|.+ |+.+++...+.|.++|++|||.+ |.+...|.|.+.+.++++.
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~f-D~~~~es~~~~~~~~v~~~ 270 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEF-TNFQGEAFYNDLMEDFIGI 270 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-eeecchHhhhhhHHHHHHH
Confidence 111 45667778889999999999985 6776777787888999999
Q ss_pred HHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhh
Q 009329 145 IINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE 224 (537)
Q Consensus 145 L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhie 224 (537)
|.++|++|+.+|.+|++.+. +|. + |.++-|+ +|.++|.++ .|+
T Consensus 271 L~~~g~~~e~dGa~~~~~~~---~g~-----------------------~-~~vl~ks--DGt~~Y~t~--------DiA 313 (562)
T PRK12451 271 LEEHDLLEESEGALVVNLEE---EGM-----------------------P-PCLIRKS--DGATIYATR--------DLT 313 (562)
T ss_pred HHHCCCEEecCCeEEEEecc---cCC-----------------------C-ceEEEeC--CCccccchh--------HHH
Confidence 99999999999998876532 220 1 3344443 444333321 122
Q ss_pred hHHHHHhh--cCCCeeEEEecccCcCccchhhHHH---hhhccCCCCceE-EEEeeeeeeCCccccccCCCcccHhHHHH
Q 009329 225 CSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSY-WMHNGHVTNNNEKMSKSLGNFFTIRQITE 298 (537)
Q Consensus 225 cs~m~~~~--~g~~~dih~~G~Dl~f~H~~~~~a~---~~a~~~~~~~~~-~~h~g~v~~~G~KMSKS~Gn~i~~~dll~ 298 (537)
+ ...++ ++....|.+.|.| |+...... +.+++..+..++ .+..|+|+.+|+||||++|++|+++||++
T Consensus 314 ~--~~~k~~~~~~d~~IyV~g~d----q~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLld 387 (562)
T PRK12451 314 A--ALYRQNTFGFDKALYVVGPE----QSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLE 387 (562)
T ss_pred H--HHHHhhccCCCEEEEEeCCc----HHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHH
Confidence 2 22233 5667789999999 76433322 233332221222 13346677799999999999999999999
Q ss_pred h-------------------------cChhhHHHHHhhcCCCCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCccccC
Q 009329 299 R-------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPFQEH 352 (537)
Q Consensus 299 ~-------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~-~~l~~l~~~~~~~~~~l~~~~~~ 352 (537)
+ .+.+++||++|+.+..++++|+++.+.+.. ++-.|+||+++|+++++++....
T Consensus 388 ea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~ 467 (562)
T PRK12451 388 EAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVE 467 (562)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 6 678999999999999999999999987776 33449999999999999986421
Q ss_pred CC------CCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHH
Q 009329 353 GK------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIEN 426 (537)
Q Consensus 353 ~~------~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (537)
.. .++.+..++..+..+++.+.++| ++++.+.++.. ++++++.+|+||+.+++.........|+.++.++..
T Consensus 468 ~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~y-l~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~a~~~ 545 (562)
T PRK12451 468 FETCTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKY-VLDVAQSFNKYYGNVRILEESAEKDSRLALVYAVTV 545 (562)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 00 12344678888999999999999 89987666666 999999999999998887533345689999999999
Q ss_pred HHHHHHhhcccCCC
Q 009329 427 EVKEVLRILGLLPP 440 (537)
Q Consensus 427 ~l~~~l~vLGi~~~ 440 (537)
+|.++|.+|||.++
T Consensus 546 vL~~gL~LLGI~~~ 559 (562)
T PRK12451 546 VLKEGLRLLGVEAP 559 (562)
T ss_pred HHHHHHHhcCCCcc
Confidence 99999999999764
No 46
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=2.3e-36 Score=346.30 Aligned_cols=209 Identities=19% Similarity=0.194 Sum_probs=157.1
Q ss_pred CeeEEEecccCcC--ccchhhHHHhhhccC-CCCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhh
Q 009329 236 KFDIHGGGIDLIF--PHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 236 ~~dih~~G~Dl~f--~H~~~~~a~~~a~~~-~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~ 311 (537)
|.|+|++|+|+++ +|...+++. ++.+ .||.++++ ||||+. +|+|||||+||+|+|.|++++||+|++|||+++
T Consensus 564 P~d~~i~G~Di~r~Wf~~~~~~~~--~~~~~~P~k~v~~-hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~ 640 (861)
T TIGR00392 564 PADFILEGSDQTRGWFYSSLAIGT--ALFGQAPYKNVIT-HGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVAS 640 (861)
T ss_pred CceEEEEecchhccHHHHHHHHHH--HHcCCCChHhhEe-cceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 6799999999999 454445443 3334 56677755 699986 899999999999999999999999999999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHH-HHHHHHHHHH--HhcCccccC------CCCCCCChHHHHHHHHHHHHHHHHHhhccC
Q 009329 312 AHYRSPLNYSVLQLDSASDAVF-YIYQTLQDCE--VALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLN 382 (537)
Q Consensus 312 ~~~~~~~~fs~~~l~~~~~~l~-~l~~~~~~~~--~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~v~~am~dd~n 382 (537)
.++.+|++|+++.+....+.+. .+++++.++. +.+.+.... ......+++++..+..+.+.+.++| ++++
T Consensus 641 ~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~ 719 (861)
T TIGR00392 641 SDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYN 719 (861)
T ss_pred CCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 9999999999999988766444 3445555554 444332110 1113356889999999999999999 8999
Q ss_pred hhhhhHHHHHHHHHH--HHHHHhhhcc--cCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 383 TSHILTGAFQDALKF--INSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 383 ~~~al~~~L~~l~~~--~N~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
++.|+.. +++|+.. .|.|++..++ |........+ .....+..+++.++.+|. |+|. .++++|+.+.
T Consensus 720 ~~~a~~~-l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~-~aeeiw~~L~ 790 (861)
T TIGR00392 720 FHKVLRA-LQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPH-TAEEIYQNLP 790 (861)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhcc
Confidence 9999999 9999875 7999987754 6543222222 233445566777777774 8888 7889998874
No 47
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-37 Score=305.11 Aligned_cols=416 Identities=15% Similarity=0.150 Sum_probs=307.3
Q ss_pred cccccCCCCcceEEEeCCCCC--CCCCcch-hhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHH
Q 009329 30 ELFTPIVPGKVGMYVCGVTAY--DLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS 106 (537)
Q Consensus 30 ~~f~p~~~~~v~~y~~gPt~y--g~~HiGh-~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~ 106 (537)
.+.-| .+|+..+.+++..|| ..+|+|| +.+.+.||+++||.+.+|+...|++|+|+++.++..+|.++|.+|+++|
T Consensus 5 ~~ilp-~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elc 83 (567)
T KOG1247|consen 5 DPILP-APNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELC 83 (567)
T ss_pred CCccc-CCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHH
Confidence 34445 467888888887777 9999999 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCCCCC--
Q 009329 107 NRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGR-- 170 (537)
Q Consensus 107 ~~~~~~~~~~l~~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~yG~-- 170 (537)
++|+..+...+.+++|. .|.+.|+| .+.+..+.+|.+|.++|+.-+..-.+.||..+ ||.||.
T Consensus 84 dKyh~ihk~vy~Wf~Id-fD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ 162 (567)
T KOG1247|consen 84 DKYHGIHKVVYDWFKID-FDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDD 162 (567)
T ss_pred HhcchhHHHHHHhhccc-ccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCcc
Confidence 99999999999999998 58888887 57788999999999999988777788888764 665553
Q ss_pred -----------Cc-chhchhhh---c--CCCc--------ccc-------c-cccCC--ccce--------eccc--ccC
Q 009329 171 -----------LS-GQRLENNR---A--GERV--------AVD-------S-RKRNP--ADFA--------LWKA--AKA 205 (537)
Q Consensus 171 -----------ls-~~~l~~~~---~--g~~~--------~~~-------~-~k~~~--~df~--------lwk~--~~~ 205 (537)
+- ..++.... + +-.+ +++ + .++.. .|+. -|.+ -+|
T Consensus 163 ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~p 242 (567)
T KOG1247|consen 163 ARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKP 242 (567)
T ss_pred ccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccc
Confidence 11 11111110 0 1000 000 0 00100 1110 1211 134
Q ss_pred CCCccccCCCCCCC----------chhhhhHH-------H---HHhhcCCCe---eEEEecccCcCccchhhHHHhhhcc
Q 009329 206 GEPSWDSPWGPGRP----------GWHIECSA-------M---SAHYLSSKF---DIHGGGIDLIFPHHENEIAQSCAAC 262 (537)
Q Consensus 206 g~~~w~~~wG~g~P----------gWhiecs~-------m---~~~~~g~~~---dih~~G~Dl~f~H~~~~~a~~~a~~ 262 (537)
..+++|..||.++| .|+.+-.. + ..++|..+- -++++|+|++.||.+..|+...+..
T Consensus 243 RCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~ 322 (567)
T KOG1247|consen 243 RCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTE 322 (567)
T ss_pred cccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCC
Confidence 56889999999999 38765311 1 223455544 4789999999999999998877654
Q ss_pred CC-CCceEEEEeeeeeeCCccccccCCCcccHhHHHH-hcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH--HHHHHH
Q 009329 263 QD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQ 337 (537)
Q Consensus 263 ~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~ 337 (537)
.. +.++....+++++.+..|+|||+|..|.-.++.+ ..++++.|||||+. |..+|..|||+.+....|+ +.||-+
T Consensus 323 en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGN 402 (567)
T KOG1247|consen 323 ENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGN 402 (567)
T ss_pred CCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHH
Confidence 32 4556666778999999999999999998888876 58999999999997 8899999999999987764 667777
Q ss_pred HHHHHHHhcCccccCC----CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhh
Q 009329 338 TLQDCEVALSPFQEHG----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ 413 (537)
Q Consensus 338 ~~~~~~~~l~~~~~~~----~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~ 413 (537)
+++|+.+++.....+. .....+..+++.++.+...+.++| +......|+.. ++++.+..|.|++.++.++....
T Consensus 403 FvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~-~m~is~~GNqylQ~~~~~k~~~~ 480 (567)
T KOG1247|consen 403 FVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKT-AMEISRRGNQYLQENTDNKLYEE 480 (567)
T ss_pred HHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhhHHHhcccccchhhh
Confidence 7777777665432211 112336788999999999999999 88999999999 99999999999999887665333
Q ss_pred hHHHHHHHHHHHHHHHHHH-hhc-ccCCCCChHHHHHHH
Q 009329 414 QLSLIESLRKIENEVKEVL-RIL-GLLPPGAYSEVLQQL 450 (537)
Q Consensus 414 ~~~~~~~l~~~~~~l~~~l-~vL-Gi~~~~~~~~~~~~~ 450 (537)
...+...+..+...|..++ .+| .++|. .+.++..++
T Consensus 481 ~r~r~~~vi~~a~nii~lvs~ll~P~mP~-~s~~I~kql 518 (567)
T KOG1247|consen 481 SRQRAGTVIGLAANIIYLVSVLLYPYMPT-TSAEILKQL 518 (567)
T ss_pred cccccceeeehhhHHHHHHHHHhcccccc-chHHHHHHh
Confidence 3334443333333333333 344 57776 566666665
No 48
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.7e-36 Score=344.67 Aligned_cols=211 Identities=17% Similarity=0.127 Sum_probs=164.2
Q ss_pred CCeeEEEecccCcC--ccchhhHHHhhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHh
Q 009329 235 SKFDIHGGGIDLIF--PHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310 (537)
Q Consensus 235 ~~~dih~~G~Dl~f--~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll 310 (537)
.|.|+|..|+|+++ ||. -..++.++.+. ||.++++| ||++. +|+|||||+||+|+|.+++++||+|++|||++
T Consensus 582 ~PaD~~~eG~Di~rgWF~s--~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 582 WPADLYLEGSDQHRGWFNS--SLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred CCceEEEEEcccccHHHHH--HHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHH
Confidence 46889999999997 555 24445555555 66788665 89997 99999999999999999999999999999999
Q ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------CCCCCCChHHHHHHHHHHHHHHHHHhhccChh
Q 009329 311 SAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTS 384 (537)
Q Consensus 311 ~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~ 384 (537)
+.++++|++||++.+.+..+.+.+|+++++.+.+.+...... ......|++++..+.++.+.+.++| ++|+++
T Consensus 659 s~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~ 737 (961)
T PRK13804 659 SVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFK 737 (961)
T ss_pred hCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 999999999999999988888888888886665555432211 0112357899999999999999999 999999
Q ss_pred hhhHHHHHHHH-HH-HHHHHhhhcccCch--hhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 385 HILTGAFQDAL-KF-INSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 385 ~al~~~L~~l~-~~-~N~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.|+.. +++|+ .. .|.|++..++|... .....+......+..+|+.++.+|. |+|. .++++|+++.
T Consensus 738 ~a~~~-l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~-~aEeiw~~L~ 807 (961)
T PRK13804 738 RIYKA-LVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPF-TAEEAWLYRY 807 (961)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHhcc
Confidence 99999 99999 34 69999988765321 1122233333445566777777774 8888 7899999886
No 49
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=7.7e-36 Score=343.73 Aligned_cols=408 Identities=16% Similarity=0.163 Sum_probs=287.0
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH-----cCCC------------h
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-----LGEN------------P 102 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~-----~g~~------------~ 102 (537)
..|....|+|+|.+||||++++++.|+++||.|++||+|.|+.|+|.+|.++...+.+ .|.+ +
T Consensus 130 f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~ 209 (1066)
T PLN02381 130 FVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEV 209 (1066)
T ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHH
Confidence 3444455666699999999999999999999999999999999999999998777644 3554 3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeecceeecCCCC--------------
Q 009329 103 LSLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-------------- 165 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s---~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~-------------- 165 (537)
.+++++|.+.+.+.+++||+..+-..++.| +|...++.+|.+|.++|++|++...|+||+.+-
T Consensus 210 ~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~ 289 (1066)
T PLN02381 210 WKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIK 289 (1066)
T ss_pred HHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccc
Confidence 588999999999999999997432122222 789999999999999999999999999997741
Q ss_pred -------CCC------CCC-------cch---------hchhhh-----------------cCC----------------
Q 009329 166 -------PNY------GRL-------SGQ---------RLENNR-----------------AGE---------------- 183 (537)
Q Consensus 166 -------~~y------G~l-------s~~---------~l~~~~-----------------~g~---------------- 183 (537)
|.+ |.+ .+. .++.+. .|.
T Consensus 290 ~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi~d 369 (1066)
T PLN02381 290 ERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICD 369 (1066)
T ss_pred cchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEEEC
Confidence 100 100 000 000000 000
Q ss_pred --Cccccc--------cccCCccceecc----------------------------------------------------
Q 009329 184 --RVAVDS--------RKRNPADFALWK---------------------------------------------------- 201 (537)
Q Consensus 184 --~~~~~~--------~k~~~~df~lwk---------------------------------------------------- 201 (537)
.|+.+. ...++.||.+++
T Consensus 370 ~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~ 449 (1066)
T PLN02381 370 AILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNN 449 (1066)
T ss_pred CccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceee
Confidence 000000 000011111111
Q ss_pred ---------cc----------------------------------------------------cCCCCccccCCCCCCCc
Q 009329 202 ---------AA----------------------------------------------------KAGEPSWDSPWGPGRPG 220 (537)
Q Consensus 202 ---------~~----------------------------------------------------~~g~~~w~~~wG~g~Pg 220 (537)
.. ++-.+++..-||.+.|.
T Consensus 450 ~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPi 529 (1066)
T PLN02381 450 EMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPA 529 (1066)
T ss_pred ecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccce
Confidence 00 00112334469999999
Q ss_pred hhhh--------hH--------H--------------------HHH----------------hhcC-----------CCe
Q 009329 221 WHIE--------CS--------A--------------------MSA----------------HYLS-----------SKF 237 (537)
Q Consensus 221 Whie--------cs--------~--------------------m~~----------------~~~g-----------~~~ 237 (537)
|++. |. + +.. ..+| .|.
T Consensus 530 w~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~ 609 (1066)
T PLN02381 530 WYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPT 609 (1066)
T ss_pred EEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCC
Confidence 9862 00 0 100 0122 368
Q ss_pred eEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHhHHHH-----------------
Q 009329 238 DIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE----------------- 298 (537)
Q Consensus 238 dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~----------------- 298 (537)
|+...|.|++|++....+.++.++.+. ||.++++ ||||+. +|+|||||+||+|+|.++++
T Consensus 610 d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~-hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~ 688 (1066)
T PLN02381 610 SVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 688 (1066)
T ss_pred eeeeecchhhhhHHHHHHHHHHHhCCCCchHHhee-cceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccc
Confidence 899999999988765556666656554 7777755 599997 89999999999999999999
Q ss_pred --------------------hcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-c-----
Q 009329 299 --------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ-E----- 351 (537)
Q Consensus 299 --------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~-~----- 351 (537)
+||+|++|||+++. ...++++|+.+.+....+.+.+|+|+++.+...+.... .
T Consensus 689 ~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~ 768 (1066)
T PLN02381 689 PKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLS 768 (1066)
T ss_pred hhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccC
Confidence 78999999999986 67889999999999888999999998876654443110 0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHH--HHHHHHHHhhhcccCchhh---hHHHHHHHHHHHH
Q 009329 352 HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA--LKFINSSLNMLKKKQPKQQ---QLSLIESLRKIEN 426 (537)
Q Consensus 352 ~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l--~~~~N~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 426 (537)
.......|+|+++.++.+...+.++| ++|++..|+.. |++| ...+|.|++..++|..... ...+......+..
T Consensus 769 ~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~-l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~ 846 (1066)
T PLN02381 769 VETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAAST-VYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWI 846 (1066)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHH
Confidence 01112468999999999999999999 89999999999 9998 5678999999988643211 1122233345556
Q ss_pred HHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 427 EVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 427 ~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
+|..++.+|. |+|. .++++|+.+.
T Consensus 847 vL~~llrLL~PfmPf-itEELw~~L~ 871 (1066)
T PLN02381 847 CLDTGLRLLHPFMPF-VTEELWQRLP 871 (1066)
T ss_pred HHHHHHHHHHhHhHH-HHHHHHHHhh
Confidence 7777788885 8888 7899998874
No 50
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=7.1e-36 Score=345.46 Aligned_cols=408 Identities=15% Similarity=0.132 Sum_probs=283.8
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHH----H-HHcCCCh------------
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR----A-NDLGENP------------ 102 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~----a-~~~g~~~------------ 102 (537)
..+....|+|+|.+||||++++++.|+++||.|++|++|.|+.|+|.+|-.+... . .+.|.++
T Consensus 62 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~ 141 (995)
T PTZ00419 62 FVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKV 141 (995)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHH
Confidence 4455556777799999999999999999999999999999999999999866333 1 3445553
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCC-Cccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCC--------------
Q 009329 103 LSLSNRYCQEYLVDMADLQCLPPT-YQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-------------- 165 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~l~i~~~~-~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~-------------- 165 (537)
.+++++|.+.+.+.|++||+..+- ....|. +|...++.+|.+|.++|++|++...|+||+.+-
T Consensus 142 ~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~ 221 (995)
T PTZ00419 142 WEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIE 221 (995)
T ss_pred HHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhccccccc
Confidence 577999999999999999997431 222233 788899999999999999999999999998741
Q ss_pred -------CCC------CC-------Ccch-h--ch-------hhh-----------------cCC---------------
Q 009329 166 -------PNY------GR-------LSGQ-R--LE-------NNR-----------------AGE--------------- 183 (537)
Q Consensus 166 -------~~y------G~-------ls~~-~--l~-------~~~-----------------~g~--------------- 183 (537)
|.| |. +.+. . +. .+- .|.
T Consensus 222 ~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii 301 (995)
T PTZ00419 222 KPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPII 301 (995)
T ss_pred ccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEE
Confidence 111 21 0000 0 00 000 000
Q ss_pred ----Cccccc--------cccCCccceeccc-------------------------------------------------
Q 009329 184 ----RVAVDS--------RKRNPADFALWKA------------------------------------------------- 202 (537)
Q Consensus 184 ----~~~~~~--------~k~~~~df~lwk~------------------------------------------------- 202 (537)
.|+.+. ...++.||.+++.
T Consensus 302 ~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~ 381 (995)
T PTZ00419 302 ADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVP 381 (995)
T ss_pred eCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEE
Confidence 000000 0001112211110
Q ss_pred -----------c-------------------------------------------------cCCCCccccCCCCCCCchh
Q 009329 203 -----------A-------------------------------------------------KAGEPSWDSPWGPGRPGWH 222 (537)
Q Consensus 203 -----------~-------------------------------------------------~~g~~~w~~~wG~g~PgWh 222 (537)
. ++-.+++...||.+.|.|+
T Consensus 382 ~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~ 461 (995)
T PTZ00419 382 NPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYR 461 (995)
T ss_pred eecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEE
Confidence 0 0001233446999999986
Q ss_pred hh-hH--------------------------------------------------HHH-HhhcC-----------CCeeE
Q 009329 223 IE-CS--------------------------------------------------AMS-AHYLS-----------SKFDI 239 (537)
Q Consensus 223 ie-cs--------------------------------------------------~m~-~~~~g-----------~~~di 239 (537)
.+ |. ... ...+| .|.|+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~ 541 (995)
T PTZ00419 462 VISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSL 541 (995)
T ss_pred eCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcE
Confidence 42 10 000 00122 26799
Q ss_pred EEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHhHHHH-------------------
Q 009329 240 HGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE------------------- 298 (537)
Q Consensus 240 h~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~------------------- 298 (537)
+..|+|++|++....++++.++.++ ||.++ ++||+|+. +|+|||||+||+|+|.++++
T Consensus 542 ~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v-~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~ 620 (995)
T PTZ00419 542 LETGSDILFFWVARMVMMSLHLTDKLPFKTV-FLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEK 620 (995)
T ss_pred EEechhHHhHHHHHHHHHHHHhcCCCChHHH-hccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchh
Confidence 9999999885443333333444455 45566 55699998 89999999999999999999
Q ss_pred ------------------hcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-------
Q 009329 299 ------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------- 352 (537)
Q Consensus 299 ------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~------- 352 (537)
+||+|++|||+++. +..+|++|+.+.+....+.+.+|+++++++...+......
T Consensus 621 e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~ 700 (995)
T PTZ00419 621 EIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFK 700 (995)
T ss_pred hhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 89999999999986 7889999999999988888889999888776554432110
Q ss_pred ----CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHH--HHHHHHHHhhhcccCc-hhhhHHHHHHHHHHH
Q 009329 353 ----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA--LKFINSSLNMLKKKQP-KQQQLSLIESLRKIE 425 (537)
Q Consensus 353 ----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l--~~~~N~~~~~~~~~~~-~~~~~~~~~~l~~~~ 425 (537)
......|++++..++.+...+.++| ++|++..|+.. +++| ...+|.|++..++|.. ......+......+.
T Consensus 701 ~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~-i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~ 778 (995)
T PTZ00419 701 PNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQA-TYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLH 778 (995)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHH
Confidence 0012347899999999999999999 89999999999 9997 4678999999888741 111112233445566
Q ss_pred HHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 426 NEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 426 ~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+|+.++.+|. |+|. .++++|+.+.
T Consensus 779 ~vL~~~l~LL~PfmPf-itEElw~~L~ 804 (995)
T PTZ00419 779 TVLDIGLRLLHPMMPF-ITEELYQRLP 804 (995)
T ss_pred HHHHHHHHHHhhhhhh-hHHHHHHhhh
Confidence 77888888885 8888 7899999885
No 51
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=1.3e-34 Score=315.63 Aligned_cols=357 Identities=11% Similarity=0.051 Sum_probs=263.3
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHH---HHHH-cC-------C-----
Q 009329 37 PGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR---RAND-LG-------E----- 100 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~---~a~~-~g-------~----- 100 (537)
+++|.+-.++|+|.|++||||+|++++||+|+|+|+..||+|.-.+.+.|+|..+-. ...+ .+ .
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 468999999999999999999999999999999999999999999999999864321 1111 01 0
Q ss_pred -------------------------------------ChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHH
Q 009329 101 -------------------------------------NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMIT 143 (537)
Q Consensus 101 -------------------------------------~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~ 143 (537)
-|+.+++.....|.+.+.+|||.+ |.. ..|.|.+.+.++++
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~f-d~~-ges~y~~~~~~vi~ 273 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVEL-EEK-GESFYNPYIPGVIE 273 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCee-eec-CchhhhhhHHHHHH
Confidence 023556666778889999999985 543 55667777899999
Q ss_pred HHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhh
Q 009329 144 QIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI 223 (537)
Q Consensus 144 ~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhi 223 (537)
.|.++|++|+.+|..|++... +| .+.++-|+ +|..+|.+. -|
T Consensus 274 ~L~~~g~~~e~dGa~~v~l~~---~~-------------------------~~~vl~ks--DGt~tY~t~--------DI 315 (576)
T PLN02286 274 ELESKGLVVESDGARVIFVEG---FD-------------------------IPLIVVKS--DGGFNYAST--------DL 315 (576)
T ss_pred HHHHCCCEEeeCCceEeeccC---CC-------------------------CceEEEEC--CCchhhHHH--------HH
Confidence 999999999999988875321 11 12233332 333222210 12
Q ss_pred hhHHHHHhhcCCCeeEEEecccCcCccchhhH---HHhhhccCCCC---ceE-EEEeeeee-eCCccccccCCCcccHhH
Q 009329 224 ECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI---AQSCAACQDSN---VSY-WMHNGHVT-NNNEKMSKSLGNFFTIRQ 295 (537)
Q Consensus 224 ecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~---a~~~a~~~~~~---~~~-~~h~g~v~-~~G~KMSKS~Gn~i~~~d 295 (537)
++...-.+-++....|.+.|.| |+.... +.+.+++..+. .++ .+..|+|+ .+|+||||++||+|+++|
T Consensus 316 A~~~~k~~~~~~d~~IyVvg~~----q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~d 391 (576)
T PLN02286 316 AALWYRLNEEKAEWIIYVTDVG----QQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVD 391 (576)
T ss_pred HHHHHHHhccCCCEEEEEEeCc----HHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHH
Confidence 2221111224556778888989 663322 22333442211 122 24457786 488899999999999999
Q ss_pred HHHh-----------------------------cChhhHHHHHhhcCCCCCcccCHHHHHHHHH-HHHHHHHHHHHHHHh
Q 009329 296 ITER-----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVA 345 (537)
Q Consensus 296 ll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~-~l~~l~~~~~~~~~~ 345 (537)
|+++ ++.+++||++|+.+..++++|+|+.+.+..+ +--|+||+++|++++
T Consensus 392 lldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SI 471 (576)
T PLN02286 392 LLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSI 471 (576)
T ss_pred HHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHH
Confidence 9983 4679999999999999999999999887763 333999999999999
Q ss_pred cCccccCC----------CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhH
Q 009329 346 LSPFQEHG----------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 415 (537)
Q Consensus 346 l~~~~~~~----------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~ 415 (537)
++++.... ..++.+..|+..+.++++.+.++. +++. |+.|+.||++|++.+|+||+.+++...... .
T Consensus 472 lrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~-P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~~-~ 548 (576)
T PLN02286 472 IRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLL-PNRLCEYLYNLSEKFTKFYSNCKVNGSEEE-T 548 (576)
T ss_pred HHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcC-chHHHHHHHHHHHHHHHHHhcCccCCCCch-h
Confidence 98864210 012345678889999999999997 7775 999999999999999999999987753222 6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCC
Q 009329 416 SLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 416 ~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
.|+.++.++..+|.++|.+|||.++
T Consensus 549 aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 549 SRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 7999999999999999999999764
No 52
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.8e-35 Score=332.55 Aligned_cols=198 Identities=19% Similarity=0.203 Sum_probs=163.9
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-C
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-H 313 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~ 313 (537)
|.|+|++|+|++++|+.+++.++.++.+. ++++.+++||||+.+|+|||||+||+|+|.+++++||+|++|||+++. +
T Consensus 530 P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~ 609 (897)
T PRK12300 530 PVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAE 609 (897)
T ss_pred CceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCC
Confidence 78999999999999999998888887654 665666889999999999999999999999999999999999999985 9
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHH-H
Q 009329 314 YRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF-Q 392 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L-~ 392 (537)
+.+|++|+++.+.+..+.+.++++++..+...... ......|+++++.++.+.+.+.++| ++|+++.|+.. + +
T Consensus 610 ~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~----~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~-i~~ 683 (897)
T PRK12300 610 LLQDADWREKEVESVRRQLERFYELAKELIEIGGE----EELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQE-AFY 683 (897)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCc----cccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHH
Confidence 99999999999999999999888887665432211 1123457899999999999999999 89999999987 6 4
Q ss_pred HHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 393 ~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+...+|+|++..++ .....+..+|+.++.+|. |+|. .++++|+.++
T Consensus 684 ~l~~~~n~Yi~~~k~-----------~~~~~l~~~l~~~~~lLaPf~P~-~aEeiw~~L~ 731 (897)
T PRK12300 684 ELLNDLRWYLRRVGE-----------ANNKVLREVLEIWIRLLAPFTPH-LAEELWHKLG 731 (897)
T ss_pred HHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHcC
Confidence 777889999876552 122345566777777775 7777 7888888774
No 53
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.1e-35 Score=330.87 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=113.5
Q ss_pred CcceEEEe--CCCCCCC-CCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009329 38 GKVGMYVC--GVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (537)
Q Consensus 38 ~~v~~y~~--gPt~yg~-~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~ 114 (537)
++.++|+. .|.|+|. +||||+++++++|+++||.|++||+|.|++|+|.||.+|..+|.+.|..|.++++++++.|.
T Consensus 108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~ 187 (963)
T PLN02563 108 SKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFR 187 (963)
T ss_pred CCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHH
Confidence 45556653 4666696 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC
Q 009329 115 VDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 164 (537)
Q Consensus 115 ~~l~~l~i~~~-~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~ 164 (537)
+.|++||+..+ +.+.+++ +|...++.+|.+|.++|++|++...|+||+.+
T Consensus 188 ~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~ 240 (963)
T PLN02563 188 SQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 240 (963)
T ss_pred HHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCc
Confidence 99999999842 2444554 79999999999999999999999999999874
No 54
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=5e-33 Score=321.14 Aligned_cols=211 Identities=15% Similarity=0.204 Sum_probs=164.4
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhc-
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~- 312 (537)
|.|+..-|.|+++.|.-.....+.+++++ ||.++ +.|||++. +|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 673 PaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~V-lvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~ 751 (1205)
T PTZ00427 673 PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNL-ICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSV 751 (1205)
T ss_pred CceEEEEecchhccHHHHHHHHHHHhcCCCCccee-EEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcC
Confidence 67899999999999987788888888876 55777 55699998 9999999999999999999999999999999986
Q ss_pred C-CCCCcccCHHHHHHH-HHHHHHHHHHHHHHHHhcCcccc-------------CCCCCCCChHHHHHHHHHHHHHHHHH
Q 009329 313 H-YRSPLNYSVLQLDSA-SDAVFYIYQTLQDCEVALSPFQE-------------HGKTARINPAAEDCINKLRDEFHARM 377 (537)
Q Consensus 313 ~-~~~~~~fs~~~l~~~-~~~l~~l~~~~~~~~~~l~~~~~-------------~~~~~~~~~~l~~~l~~~~~~v~~am 377 (537)
. ..++++|+++.+.+. .+.+.+++++++.+...+..... .......|+|+++.++.+.+.+.++|
T Consensus 752 ~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~m 831 (1205)
T PTZ00427 752 AVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEM 831 (1205)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 368999999998755 45577888877666553331100 01123358999999999999999999
Q ss_pred hhccChhhhhHHHHHHHHH-HHHHHHhhhcc--cCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 378 SDDLNTSHILTGAFQDALK-FINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 378 ~dd~n~~~al~~~L~~l~~-~~N~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
++|++..|+.. |++|+. ..|+|++..+. |.... .+.....+..+..+|+.++.+|. |+|. .++++++.+.
T Consensus 832 -e~Y~f~~A~~~-i~~Fi~~lsnwYIe~~K~rl~~~~~-~~~~~~a~~tL~~vL~~~~~LLaPf~Pf-iaEeiyq~L~ 905 (1205)
T PTZ00427 832 -KAYKLYNVLPK-LLQFIENLTNWYIRLNRDRMRGSLG-EENCLQSLCTTYRTLHLFTVLMAPFTPF-ITEYIYQQLR 905 (1205)
T ss_pred -HccCHHHHHHH-HHHHHHHhccHHHHHcchhhccCCC-cHHHHHHHHHHHHHHHHHHHHccccchH-HHHHHHHHhh
Confidence 99999999999 999998 45888875542 32111 11233445667778888888885 8888 7899998884
No 55
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-33 Score=306.04 Aligned_cols=403 Identities=17% Similarity=0.219 Sum_probs=282.1
Q ss_pred CccccccCCC-Cc-ceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChH
Q 009329 28 QKELFTPIVP-GK-VGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPL 103 (537)
Q Consensus 28 ~~~~f~p~~~-~~-v~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~ 103 (537)
+...|++..+ ++ -++|++.|-|| |.+|+||.|+|+++|+++||.|++||+|+|.+|+|-.|.+++..|.+.|.+|.
T Consensus 20 e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~ 99 (814)
T COG0495 20 EAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPA 99 (814)
T ss_pred hcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChH
Confidence 3456766433 33 48999988888 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCC--ccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC-------------CC
Q 009329 104 SLSNRYCQEYLVDMADLQCLPPTY--QPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SP 166 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~l~i~~~~~--~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~-------------~~ 166 (537)
.+++.++..+.+.|+.||.+. |. ...++ +|-..++.+|.+|.++|++|.++..|-||+.+ |-
T Consensus 100 ~wt~~ni~~~k~qlk~lG~si-DW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~ 178 (814)
T COG0495 100 KWTYYNIAYMKKQLKSLGFSI-DWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCW 178 (814)
T ss_pred HHHHHHHHHHHHHHHHhCCcc-ccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcc
Confidence 999999999999999999984 32 22222 79999999999999999999999999999884 22
Q ss_pred CCCCC-------------cc---h---hchhh-----------h----------------cCC-----------------
Q 009329 167 NYGRL-------------SG---Q---RLENN-----------R----------------AGE----------------- 183 (537)
Q Consensus 167 ~yG~l-------------s~---~---~l~~~-----------~----------------~g~----------------- 183 (537)
+||.. +. . +++.+ . .|.
T Consensus 179 r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~ 258 (814)
T COG0495 179 RCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLF 258 (814)
T ss_pred cCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCcccc
Confidence 23310 00 0 00000 0 000
Q ss_pred --C----------------------------------c-------------cccccccCC--------------------
Q 009329 184 --R----------------------------------V-------------AVDSRKRNP-------------------- 194 (537)
Q Consensus 184 --~----------------------------------~-------------~~~~~k~~~-------------------- 194 (537)
+ + ....+..||
T Consensus 259 gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygt 338 (814)
T COG0495 259 GVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGT 338 (814)
T ss_pred CeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCcccccccc
Confidence 0 0 000000001
Q ss_pred -----------ccceecccc---------cC-----------------------------------------C-------
Q 009329 195 -----------ADFALWKAA---------KA-----------------------------------------G------- 206 (537)
Q Consensus 195 -----------~df~lwk~~---------~~-----------------------------------------g------- 206 (537)
+||...+.. .. |
T Consensus 339 gavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~ 418 (814)
T COG0495 339 GAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYR 418 (814)
T ss_pred cceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHHhcCCceEEecc
Confidence 111000000 00 0
Q ss_pred CCcc----ccCCCCCCC--------------------------------------chh-hhhHH---------HH-----
Q 009329 207 EPSW----DSPWGPGRP--------------------------------------GWH-IECSA---------MS----- 229 (537)
Q Consensus 207 ~~~w----~~~wG~g~P--------------------------------------gWh-iecs~---------m~----- 229 (537)
...| ..-||.+.| .|- ..|+. |.
T Consensus 419 lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~s 498 (814)
T COG0495 419 LRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDS 498 (814)
T ss_pred cchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhccc
Confidence 0112 112444443 132 22321 10
Q ss_pred H----hh-----cC------------CCeeEEEecccCcCccchhhHHHhhhccC-------CCCceEEEEeeeeee-CC
Q 009329 230 A----HY-----LS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQ-------DSNVSYWMHNGHVTN-NN 280 (537)
Q Consensus 230 ~----~~-----~g------------~~~dih~~G~Dl~f~H~~~~~a~~~a~~~-------~~~~~~~~h~g~v~~-~G 280 (537)
+ +| .| .|+|++.||+||+.-|..+.+..+.++.. +|+.+. +.+|||+. +|
T Consensus 499 swy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L-~~qGmVl~~~g 577 (814)
T COG0495 499 SWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL-ITQGMVLGEEG 577 (814)
T ss_pred ccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhh-hccceEEecCC
Confidence 0 11 11 28999999999999999998888888752 355556 88999999 79
Q ss_pred ccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCC
Q 009329 281 EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARIN 359 (537)
Q Consensus 281 ~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~ 359 (537)
+|||||+||+|+|++++++||+|++|+|++.. +..++++|+++.+..+.+.+.++++.+.+........ ....+
T Consensus 578 ~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~~~~~ 652 (814)
T COG0495 578 EKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----LTKEQ 652 (814)
T ss_pred CccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----ccchh
Confidence 99999999999999999999999999999997 9999999999999999999999998876655432110 01111
Q ss_pred -hHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-c
Q 009329 360 -PAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-L 437 (537)
Q Consensus 360 -~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i 437 (537)
..+...+.++...+.+.++..+.+..|++. +|+|+..+.+|...... . . ..+...+..+..+|- |
T Consensus 653 ~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~-~m~l~N~l~~~~~~~~~----~-----~---~~l~~~l~~~v~lLaP~ 719 (814)
T COG0495 653 GKEDRWLLHRTIKKVTEDFEARQTFNTAIAA-LMELLNALRKYLRRTEG----D-----R---KVLREALETWVRLLAPF 719 (814)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc----h-----H---HHHHHHHHHHHHHhccc
Confidence 344455667777777777333777888999 99999999888765331 0 1 223445666666774 7
Q ss_pred CCCCChHHHHHHHH
Q 009329 438 LPPGAYSEVLQQLK 451 (537)
Q Consensus 438 ~~~~~~~~~~~~~~ 451 (537)
.|. -+++.|..++
T Consensus 720 aPH-~aEElW~~lg 732 (814)
T COG0495 720 APH-IAEELWEELG 732 (814)
T ss_pred ccH-HHHHHHHHhc
Confidence 777 6888888775
No 56
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-32 Score=305.53 Aligned_cols=211 Identities=19% Similarity=0.235 Sum_probs=166.5
Q ss_pred eEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCC
Q 009329 238 DIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315 (537)
Q Consensus 238 dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~ 315 (537)
|+..-|.|+..-+.--....+.|+.+. |+.++ +.|||++. +|+|||||+||+|+|.|++++||+|+||+|+++++|.
T Consensus 557 D~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~v-ltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~ 635 (933)
T COG0060 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNV-LTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYW 635 (933)
T ss_pred cEEEEeccccchhHHHHHHHHHHHcCCchHHHH-hhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCch
Confidence 778888884333222222344556676 44556 66799998 8999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC------CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHH
Q 009329 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 389 (537)
Q Consensus 316 ~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~ 389 (537)
.++.||++.+++....+..|+|+++.+..++....... .....|++++..++.+...+.++| ++|++..++..
T Consensus 636 ~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eay-e~y~f~~v~~~ 714 (933)
T COG0060 636 EDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAY-ENYDFHKVVRA 714 (933)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999999999999999999988888877654321 123468999999999999999999 99999999999
Q ss_pred HHHHHH-HHH-HHHHhhhc--ccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHH
Q 009329 390 AFQDAL-KFI-NSSLNMLK--KKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 390 ~L~~l~-~~~-N~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
|++|+ ..+ |.|++..+ .|......+.|.+....+..+|..+..+|. |+|. +++++|+.+..
T Consensus 715 -l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPf-taEeiw~~l~~ 780 (933)
T COG0060 715 -LMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPF-TAEEIWQNLPG 780 (933)
T ss_pred -HHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHhCcc
Confidence 99999 555 55665544 455434455666666677778888888886 7787 78999987743
No 57
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=3.2e-32 Score=277.59 Aligned_cols=273 Identities=16% Similarity=0.178 Sum_probs=182.6
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhH------------------HHHHHHHHcCC
Q 009329 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD------------------KIIRRANDLGE 100 (537)
Q Consensus 39 ~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~------------------ki~~~a~~~g~ 100 (537)
..-+..||++|+|.+||||+|+++.+|+++|+||.+|++|.||+++||+|. ++...+...|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 346778899999999999999999999999999999999999999999953 44444555566
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhH--HHHHHHHHHHHHCCceeee--------ecceeec-CCCCCCCC
Q 009329 101 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM--EQIKDMITQIINNDCAYVV--------EGDVFFA-VEKSPNYG 169 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~--~~~~~~i~~L~~~G~ay~~--------~~~v~f~-~~~~~~yG 169 (537)
.+ +++++|.+.|.+.|+.|||+ ++.+.++..+. .....+...|.+++.+... -..-|+. ..-|++||
T Consensus 99 ~~-~~~d~~~~~f~~~l~~lgi~-~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg 176 (353)
T cd00674 99 CE-SYAEHFERPFEESLEKLGIE-VEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCG 176 (353)
T ss_pred CH-HHHHHHHHHHHHHHHHcCCe-eeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcC
Confidence 55 99999999999999999998 56554443322 3455666677777765321 1123332 23589999
Q ss_pred CCcchhchhhhc-CCCccccccccCCccceecccccCCCCccccC-CCCCCCchhhhhHHHHHhhcCCCeeEEEecccCc
Q 009329 170 RLSGQRLENNRA-GERVAVDSRKRNPADFALWKAAKAGEPSWDSP-WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (537)
Q Consensus 170 ~ls~~~l~~~~~-g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~-wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~ 247 (537)
++.. .+.+... ..+|...+. .|.-.+.+. =|.|...|.++++ |.+.++ .+|+.++|+||.
T Consensus 177 ~~~~-~v~~~d~~~~~v~y~c~--------------cG~~g~~~~~~g~~KL~Wr~dW~-~rW~~l--~Vd~E~~GkDh~ 238 (353)
T cd00674 177 KDTT-TVEAYDAKAGTVTYKCE--------------CGHEETVDIRTGRGKLTWRVDWP-MRWAIL--GVDFEPFGKDHA 238 (353)
T ss_pred ccee-EEEEEeCCCCeEEEEcC--------------CCCEEEEeecCCCcccCCCCCch-hhhhhc--CCCEEeeCcccc
Confidence 8752 3322211 112322211 111111110 1233333444432 234456 589999999954
Q ss_pred Cc---cchhhHHHhh-hccCCCCceEEEEeeeeeeCCc-cccccCCCcccHhHHHHhcChhhHHHHHhhcC-CCCCcccC
Q 009329 248 FP---HHENEIAQSC-AACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISAH-YRSPLNYS 321 (537)
Q Consensus 248 f~---H~~~~~a~~~-a~~~~~~~~~~~h~g~v~~~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~-~~~~~~fs 321 (537)
-+ +-. ..+.+. +++..+|. . +.+||++++|. |||||+||+|++.|+|+.+++|++|||+++.+ ..++++|+
T Consensus 239 ~~ggs~~~-~~~i~~~ilg~~~P~-~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd 315 (353)
T cd00674 239 SAGGSYDT-GKEIAREIFGGEPPV-P-VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFD 315 (353)
T ss_pred ccccHHHH-HHHHHHHHhCCCCCe-E-EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcC
Confidence 43 111 122233 55555553 3 55699999776 99999999999999999999999999999986 88999999
Q ss_pred HHHHHHHHHHHHHH
Q 009329 322 VLQLDSASDAVFYI 335 (537)
Q Consensus 322 ~~~l~~~~~~l~~l 335 (537)
++ +......+.++
T Consensus 316 ~~-~~~~~dey~r~ 328 (353)
T cd00674 316 LD-ILRLYDEYDRL 328 (353)
T ss_pred hh-HHHHHHHHHHH
Confidence 85 33344444333
No 58
>PLN02959 aminoacyl-tRNA ligase
Probab=99.97 E-value=1.1e-29 Score=293.78 Aligned_cols=204 Identities=22% Similarity=0.177 Sum_probs=149.7
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-C
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-H 313 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~ 313 (537)
|+|++..|+|++++|..+.+..+.++.+. ||++.+++||||+.+|+|||||+||+|+|.+++++||+|++|||+++. +
T Consensus 671 P~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~ 750 (1084)
T PLN02959 671 PFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGD 750 (1084)
T ss_pred CCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCC
Confidence 78999999999999998888888887764 777766888999999999999999999999999999999999999987 8
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHH
Q 009329 314 YRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 393 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~ 393 (537)
+.+|.+|+++.+..+...+.++...+.+....-............|+++++.++.+...+.++| +++++..|+..-+++
T Consensus 751 ~~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~~~Ye 829 (1084)
T PLN02959 751 GVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKSGFYD 829 (1084)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHH
Confidence 8899999999887666555443332222211000000111123468999999999999999999 899999999983344
Q ss_pred HHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009329 394 ALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 394 l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
|.....+|...+. .. . .....+..+|..++.+|. |+|. .++++|+.+
T Consensus 830 l~~~k~~yr~~~~----~~-~----~~~~~L~~vl~~~l~LLaP~~Pf-iaEEiW~~l 877 (1084)
T PLN02959 830 LQAARDEYRLSCG----SG-G----MNRDLVWRFMDVQTRLITPICPH-YAEHVWREI 877 (1084)
T ss_pred HHHhHHHHhhccc----cc-h----HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhc
Confidence 4443333322111 00 0 112345567777888885 8888 789999887
No 59
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.97 E-value=3.2e-30 Score=248.45 Aligned_cols=203 Identities=20% Similarity=0.116 Sum_probs=162.0
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009329 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 39 ~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
+|.+-.++|||+|++||||+|+++++|+|+|+|++.||+|.+++++||+|+||...|...+ .|+++++.+.+.|.++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999997664 499999999999999999
Q ss_pred HcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccce
Q 009329 119 DLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198 (537)
Q Consensus 119 ~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~ 198 (537)
+|||. +|.++++|++++.++++++.|.++|++|+.+|.+||++.++ +..+ |+.
T Consensus 80 ~L~i~-~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~-------------------------~~~~-d~v 132 (212)
T cd00671 80 RLDVR-FDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEF-------------------------GDDK-DRV 132 (212)
T ss_pred HhCCc-CceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhh-------------------------CCCC-CeE
Confidence 99999 69999999999999999999999999999999999987543 1112 666
Q ss_pred ecccccCCCCccccCCCCCCCchh---hhhHHHHHhhcCCCeeEEEecccCcCccchhhHHH---hhhccCCCCceEEEE
Q 009329 199 LWKAAKAGEPSWDSPWGPGRPGWH---IECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWMH 272 (537)
Q Consensus 199 lwk~~~~g~~~w~~~wG~g~PgWh---iecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~---~~a~~~~~~~~~~~h 272 (537)
+.|+ + |.|.++ ++|...-.. ++.+..|.+.|.| |+.....+ +.+++..+..++ .|
T Consensus 133 l~rs--d-----------G~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~----~~~~~~~~~~~~~~lg~~~~~~~-~h 193 (212)
T cd00671 133 LVRS--D-----------GTYTYFTRDIAYHLDKFE-RGADKIIYVVGAD----HHGHFKRLFAALELLGYDEAKKL-EH 193 (212)
T ss_pred EEEC--C-----------CCccchHHHHHHHHHHHh-cCCCEEEEEECCC----HHHHHHHHHHHHHHcCCCCCCCe-EE
Confidence 6665 2 455555 444433222 5667778899999 55443333 344443323334 44
Q ss_pred e--eeeeeC-CccccccCC
Q 009329 273 N--GHVTNN-NEKMSKSLG 288 (537)
Q Consensus 273 ~--g~v~~~-G~KMSKS~G 288 (537)
. |+|+.. |+|||||.|
T Consensus 194 ~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 194 LLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEEeEEcCCCCCCCCCCC
Confidence 4 788875 999999987
No 60
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=4.3e-30 Score=276.18 Aligned_cols=278 Identities=18% Similarity=0.185 Sum_probs=188.5
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhH--HH-------HHHHHHcCCC---------
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KI-------IRRANDLGEN--------- 101 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~--ki-------~~~a~~~g~~--------- 101 (537)
.-++.||++|+|.+||||+|+++.+|+++|+||.+|++|.||+++||+|. || ...++..|.+
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 47889999999999999999999999999999999999999999999985 44 1244455665
Q ss_pred -hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhH--HHHHHHHHHHHHCCceeee--------ecceeec-CCCCCCCC
Q 009329 102 -PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM--EQIKDMITQIINNDCAYVV--------EGDVFFA-VEKSPNYG 169 (537)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~--~~~~~~i~~L~~~G~ay~~--------~~~v~f~-~~~~~~yG 169 (537)
+++++++|...|.+.++.+||. ++++..+..|. .....+...|.+++.+... ...-|+. ..-|++||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~-~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg 182 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIE-YEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKCG 182 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCc-eEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCC
Confidence 7999999999999999999998 56554433221 1122222333333333211 1122332 22589999
Q ss_pred CCcchhchhhhc-CCCccccccccCCccceecccccCCCCccccCC-CCCCCchhhhhHHHHHhhcCCCeeEEEecccCc
Q 009329 170 RLSGQRLENNRA-GERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (537)
Q Consensus 170 ~ls~~~l~~~~~-g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~w-G~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~ 247 (537)
++....+.+... ..+|...+. .|.-.+.+.. |.|.-.|.++++ |.+.++ .+|+.++|+|+.
T Consensus 183 ~~~~~~~~~~d~~~~~v~y~~~--------------cG~~~~~~~~~g~~KL~Wr~dW~-~rW~~l--~Vd~e~~GkDh~ 245 (510)
T PRK00750 183 KVLTTPVISYDAEAGTVTYDCE--------------CGHEGEVPVTGGHGKLQWKVDWP-MRWAAL--GVDFEPFGKDHA 245 (510)
T ss_pred ccceEEEEEEeCCCCEEEEEcC--------------CCCEEEEecCCCCcccCCCCCcH-HHHHHc--CCCEEeeCcccC
Confidence 986644422211 112222111 1111111110 334444555543 345566 489999999977
Q ss_pred CccchhhHHHhh-hccCCCCceEEEEeeeeeeC-CccccccCCCcccHhHHHHhcChhhHHHHHhh-cCCCCCcccCHHH
Q 009329 248 FPHHENEIAQSC-AACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQ 324 (537)
Q Consensus 248 f~H~~~~~a~~~-a~~~~~~~~~~~h~g~v~~~-G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~ 324 (537)
.+++.....++. +++.++|. . +|+||++++ |+|||||+||+|++.|+++.++||++|||++. .++.++++|++
T Consensus 246 ~~s~~~~~~i~~~ilg~~~P~-~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~-- 321 (510)
T PRK00750 246 SASYDTSKKIAREILGGEPPE-P-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV-- 321 (510)
T ss_pred cchHHHHHHHHHHHcCCCCCe-e-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--
Confidence 632223334444 55555553 3 678999997 99999999999999999999999999988775 59999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009329 325 LDSASDAVFYIYQTL 339 (537)
Q Consensus 325 l~~~~~~l~~l~~~~ 339 (537)
+..+.+.+.++...+
T Consensus 322 l~~~~dey~rl~~~~ 336 (510)
T PRK00750 322 IPKLVDEYDRFERKY 336 (510)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666554
No 61
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.96 E-value=4.4e-29 Score=266.35 Aligned_cols=272 Identities=15% Similarity=0.186 Sum_probs=181.5
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhH------------------HHHHHHHHcCCC
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD------------------KIIRRANDLGEN 101 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~------------------ki~~~a~~~g~~ 101 (537)
.-++.||-+|+|.+||||+|.++.+|+++|++|.+|++|.+|++.||+|. ++...+...|..
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 57788899999999999999999999999999999999999999999952 333333334554
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCccchhh----------------hHHHHHHHHHHHHHCCceeeeecceeec-CCC
Q 009329 102 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD----------------HMEQIKDMITQIINNDCAYVVEGDVFFA-VEK 164 (537)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~----------------~~~~~~~~i~~L~~~G~ay~~~~~v~f~-~~~ 164 (537)
.+++++|...|.+.|+.|||. ++ +.++|+ +.+.+.+++...... + ...-||. ..-
T Consensus 99 -~s~~~h~~~~~~~~l~~~gi~-~e-~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~----~-~~~~~~P~~pi 170 (515)
T TIGR00467 99 -TSYAEHFLIPFLESLPVLGIN-PE-FIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTS----K-LEENWYPISVF 170 (515)
T ss_pred -HHHHHHHHHHHHHHHHHcCCe-EE-EEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC----c-cCCCceeeeee
Confidence 899999999999999999997 34 334442 223333333333221 1 1122222 235
Q ss_pred CCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCcccc-CCCCCCCchhhhhHHHHHhhcCCCeeEEEec
Q 009329 165 SPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (537)
Q Consensus 165 ~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~-~wG~g~PgWhiecs~m~~~~~g~~~dih~~G 243 (537)
|++||++....+ +.....+|...+. .|.-.+.+ -=|.|.-.|.++++ |.+.+| .+|+...|
T Consensus 171 c~~cGrv~~~~~-~~~~~~~v~Y~c~--------------cG~~g~~~~~~g~~KL~WkvdW~-~RW~~l--gV~~Ep~G 232 (515)
T TIGR00467 171 CENCGRDTTTVN-NYDNEYSIEYSCE--------------CGNQESVDIYTGAIKLPWRVDWP-ARWKIE--KVTFEPAG 232 (515)
T ss_pred cCCcCccCceEE-EecCCceEEEEcC--------------CCCEEEEeecCCCcccCCCCCcH-hhHhhh--CcccccCC
Confidence 899999754222 2221223332221 11111111 11233334444442 334556 48999999
Q ss_pred ccCcCccc----hhhHHHhhhccCCCCceEEEEeeeeee--CCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCC
Q 009329 244 IDLIFPHH----ENEIAQSCAACQDSNVSYWMHNGHVTN--NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317 (537)
Q Consensus 244 ~Dl~f~H~----~~~~a~~~a~~~~~~~~~~~h~g~v~~--~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~ 317 (537)
+||.-+-. ...+|+ +++++.+|..+ ..+|+.+ +|+|||||+||+|+++|+++.++++++||++++.+++++
T Consensus 233 kDH~~~ggsy~~~~~ia~-~~l~~~~P~~~--~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~~ 309 (515)
T TIGR00467 233 KDHAAAGGSYDTGVNIAK-EIFQYSPPVTV--QYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFH 309 (515)
T ss_pred CCccCccCCchhHHHHHH-HHhCCCCCcCc--EEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCCC
Confidence 99433221 122333 46666655432 2356545 567999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHH
Q 009329 318 LNYSVLQLDSASDAVFYIYQTLQD 341 (537)
Q Consensus 318 ~~fs~~~l~~~~~~l~~l~~~~~~ 341 (537)
++|+++.+ ++...+.++...+..
T Consensus 310 ldFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 310 ISFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred CcCCHHHH-HHHHHHHHHHHHHHh
Confidence 99999988 888888777666644
No 62
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-27 Score=256.03 Aligned_cols=207 Identities=18% Similarity=0.170 Sum_probs=156.8
Q ss_pred CeeEEEecccCcCccchhhHHHhhhc----cCC-CCceEEEEeeeeee-CCccccccCCCcccHhHHHH-----------
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAA----CQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE----------- 298 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~----~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~----------- 298 (537)
|.++.=.|.|++|| |+|.+..+ +|+ ||.++++| ++|.. .|+|||||+||||.|.|+++
T Consensus 546 P~sllETG~DILfF----WVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L 620 (995)
T KOG0432|consen 546 PLSLLETGHDILFF----WVARMVMLGLKLTGELPFKEVLLH-GLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKL 620 (995)
T ss_pred CchhhhcCchHHHH----HHHHHHHhhhhhcCCCCchheeec-hhhccccccccchhhccccCHHHHhccccHHHHHHHH
Confidence 34466669999886 55665544 454 78888675 89988 89999999999999999987
Q ss_pred -------------------h-------cChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-
Q 009329 299 -------------------R-------YHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ- 350 (537)
Q Consensus 299 -------------------~-------~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~- 350 (537)
. .|.|++||.|++. .-.+++++|...+...+...++|||+.+.+...+.+..
T Consensus 621 ~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~ 700 (995)
T KOG0432|consen 621 LSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFV 700 (995)
T ss_pred HcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCC
Confidence 2 3899999999996 88999999999999999999999999887776554421
Q ss_pred c----CCCC-CC-CChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHHHHH
Q 009329 351 E----HGKT-AR-INPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLR 422 (537)
Q Consensus 351 ~----~~~~-~~-~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~~l~ 422 (537)
. .... .. .+.|+++.+....+.+...| +.+|+..|..+ ++.|. ..+.-|++..++...............
T Consensus 701 p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a-~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~ 778 (995)
T KOG0432|consen 701 PSPTEDLSGNESLVDEWILSRLAEAVEEVNESL-EARNFHLATSA-LYAFWLYDLCDVYLEATKPLLWGDSEALAYEARR 778 (995)
T ss_pred CCcccccCCCcchhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHH-HHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHH
Confidence 1 0011 11 67899999999999999999 99999999999 88875 345778887776322111112222234
Q ss_pred HHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009329 423 KIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 423 ~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
.+...|...|.+|. ++|. -+++.|+.+
T Consensus 779 vL~~~ld~gLrll~PfMPF-vtEel~qrl 806 (995)
T KOG0432|consen 779 VLYRCLDNGLRLLHPFMPF-ITEELWQRL 806 (995)
T ss_pred HHHHHHHHHHHHhcCcccc-cHHHHHHhc
Confidence 45567778888884 8888 688888876
No 63
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.95 E-value=1.7e-28 Score=270.52 Aligned_cols=124 Identities=12% Similarity=0.021 Sum_probs=98.8
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHc-CC----------------ChH
Q 009329 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GE----------------NPL 103 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~-g~----------------~~~ 103 (537)
.+....|+++|.+|+||++++++.|+++||.+++|++|.++.|+|.+|.+|+.++.+. |. .+.
T Consensus 26 ~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~ 105 (601)
T PF00133_consen 26 FIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECR 105 (601)
T ss_dssp EEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHH
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhc
Confidence 3344456666999999999999999999999999999999999999999999888653 43 267
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccchh---hhHHHHHHHHHHHHHCCceeeeecceeecCCC
Q 009329 104 SLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 164 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~l~i~~~~~~~r~s---~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~ 164 (537)
++++++.+.+.+.+++||+..+-..+..| .+...++..|.+|.++|++|+....|+||+.+
T Consensus 106 ~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~ 169 (601)
T PF00133_consen 106 EWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSC 169 (601)
T ss_dssp HHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTT
T ss_pred chhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCccc
Confidence 89999999999999999997421222223 68889999999999999999999999999885
No 64
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.6e-27 Score=244.51 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=109.1
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
|...-|-|.|.+||||.|.|.+.|+++|+.|++||+|++.+|+|-+|.+-.+.|.+.|+.|.+++...++.+++-|..||
T Consensus 61 iLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~lg 140 (876)
T KOG0435|consen 61 ILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLG 140 (876)
T ss_pred EEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHcC
Confidence 33345777799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchh----hhHHHHHHHHHHHHHCCceeeeecceeecCC
Q 009329 122 CLPPTYQPRVS----DHMEQIKDMITQIINNDCAYVVEGDVFFAVE 163 (537)
Q Consensus 122 i~~~~~~~r~s----~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~ 163 (537)
+.+ |.....| +|....|-+|.+|.++|+||..+-.|-+|+-
T Consensus 141 ~~F-DWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPv 185 (876)
T KOG0435|consen 141 ISF-DWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPV 185 (876)
T ss_pred ccc-ccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcc
Confidence 984 4332222 7999999999999999999999988888876
No 65
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.95 E-value=3.8e-27 Score=251.82 Aligned_cols=260 Identities=23% Similarity=0.239 Sum_probs=198.1
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009329 37 PGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
+|+|.+. |+|+|+|++||||||++++.+.++| +|...++..+||.|++| .+. ...|.+.|.++
T Consensus 99 ~g~V~tR-FaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~-~R~----------~~e~~~~I~ed 161 (567)
T PRK04156 99 KGKVVMR-FAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT-KRP----------DPEAYDMILED 161 (567)
T ss_pred CCeEEEE-eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc-ccc----------hHHHHHHHHHH
Confidence 5678888 8999999999999999999999999 68899999999999876 221 23466999999
Q ss_pred HHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC----CCC------CCCCcchh-c---hhhhcC
Q 009329 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPN------YGRLSGQR-L---ENNRAG 182 (537)
Q Consensus 117 l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~----~~~------yG~ls~~~-l---~~~~~g 182 (537)
|++||+. +|...++|+|++.+.+++++|+++|+|| ++||... ... |-.++..+ + ++|..|
T Consensus 162 L~wLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY-----~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G 235 (567)
T PRK04156 162 LKWLGVK-WDEVVIQSDRLEIYYEYARKLIEMGGAY-----VCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDG 235 (567)
T ss_pred HHHcCCC-CCCccCcccCHHHHHHHHHHHHHcCCCc-----cCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcC
Confidence 9999997 5778899999999999999999999999 5555431 111 21232221 1 233334
Q ss_pred C--------CccccccccCC--ccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcC---c
Q 009329 183 E--------RVAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF---P 249 (537)
Q Consensus 183 ~--------~~~~~~~k~~~--~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f---~ 249 (537)
. |+..+....++ +||++|+......+ .||.++++|+. -.|...+|.|.+|++|++ .
T Consensus 236 ~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~----~~Gd~~~i~Pt-------Y~fA~~VDD~l~GITHViRg~d 304 (567)
T PRK04156 236 EYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHP----RVGDKYRVWPT-------YNFAVAVDDHLLGVTHVLRGKD 304 (567)
T ss_pred ccccCCeEEEEECcccCCCCCccccEEEEEcCCCcc----ccCCCeEEEEE-------eccCceeeecCCCCCeEEcccc
Confidence 3 22233223455 79999987544433 27888777754 136668999999999999 8
Q ss_pred cchhhHHHhhhcc--CCCCceEEEEeeeeeeCCccccccC-------C--------CcccHhHHHH-hcChhhHHHHHhh
Q 009329 250 HHENEIAQSCAAC--QDSNVSYWMHNGHVTNNNEKMSKSL-------G--------NFFTIRQITE-RYHPLALRHFLIS 311 (537)
Q Consensus 250 H~~~~~a~~~a~~--~~~~~~~~~h~g~v~~~G~KMSKS~-------G--------n~i~~~dll~-~~~~d~lR~~ll~ 311 (537)
|+.+.+.|...+. +.+++ +|+|.+.++++|.|||||+ | +..|+..+.. +|.|++||.|+++
T Consensus 305 ~~~~t~~Q~~l~~~Lg~~~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~ 383 (567)
T PRK04156 305 HIDNTEKQRYIYDYFGWEYP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIE 383 (567)
T ss_pred cccChHHHHHHHHHcCCCCc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999998875543 33444 4599999999999999998 5 4468888877 4999999999998
Q ss_pred cCCC-CCcccCHHHHHHHHHH
Q 009329 312 AHYR-SPLNYSVLQLDSASDA 331 (537)
Q Consensus 312 ~~~~-~~~~fs~~~l~~~~~~ 331 (537)
..++ ++..|+++.|.+..+.
T Consensus 384 lG~s~~~~~~~~~~L~~~nr~ 404 (567)
T PRK04156 384 VGVKETDATISWENLYAINRK 404 (567)
T ss_pred hCCCCCCcccCHHHHHHHHHH
Confidence 8776 8999999999876654
No 66
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.94 E-value=2.5e-26 Score=207.89 Aligned_cols=142 Identities=27% Similarity=0.314 Sum_probs=131.0
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
+++|||+|+|++||||+|+++.+|+++|+||.+|++|.+++++||+|+++...|.+.|.+|+++++++.+.|.++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--- 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE--- 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecc
Q 009329 122 CLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWK 201 (537)
Q Consensus 122 i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk 201 (537)
T Consensus 78 -------------------------------------------------------------------------------- 77 (143)
T cd00802 78 -------------------------------------------------------------------------------- 77 (143)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeee-CC
Q 009329 202 AAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NN 280 (537)
Q Consensus 202 ~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G 280 (537)
|+++|+++...+.+...+++++|+|+.+ |+.+..++.+++++.. ...++|.|+++. +|
T Consensus 78 -------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~-~p~~~~~~~l~~~~g 136 (143)
T cd00802 78 -------------------YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA-RPFGLTFGRVMGADG 136 (143)
T ss_pred -------------------HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCC-CceEEEeCCeECCCC
Confidence 8999999988877767899999999998 9999999999887543 346799999998 56
Q ss_pred ccccccC
Q 009329 281 EKMSKSL 287 (537)
Q Consensus 281 ~KMSKS~ 287 (537)
+|||||+
T Consensus 137 ~KmSks~ 143 (143)
T cd00802 137 TKMSKSK 143 (143)
T ss_pred CcCCCCC
Confidence 9999995
No 67
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.6e-24 Score=226.54 Aligned_cols=207 Identities=18% Similarity=0.213 Sum_probs=151.6
Q ss_pred CeeEEEecccCcCccchhhHH----HhhhccCC-CCceEEEEeeeeee-CCccccccCCCcccHhHHHHh------cChh
Q 009329 236 KFDIHGGGIDLIFPHHENEIA----QSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER------YHPL 303 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a----~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~------~~~d 303 (537)
..|+..-|.| .|-.|.- .+.|..++ |+..+ +.|||... +|.|||||+||||+|+.++++ ||+|
T Consensus 566 ~aDv~LEG~D----Q~rGWFQSsLLTsvA~q~kAPYk~v-ivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD 640 (937)
T KOG0433|consen 566 VADVYLEGVD----QFRGWFQSSLLTSVAVQNKAPYKKV-IVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGAD 640 (937)
T ss_pred ceeeEEecch----hcchHHHHHHHHHHHHhccCCchhe-eeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCcccc
Confidence 4678899999 4545542 33555555 55566 55699888 799999999999999999998 9999
Q ss_pred hHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCC------CCCCChHHHHHHHHHHHHHHHHH
Q 009329 304 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK------TARINPAAEDCINKLRDEFHARM 377 (537)
Q Consensus 304 ~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~------~~~~~~~l~~~l~~~~~~v~~am 377 (537)
++|||.++..+..++...+..|.++...+.++.++++.+.+.+........ ..-.|+.++..+.++.+++.+.+
T Consensus 641 ~LR~WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y 720 (937)
T KOG0433|consen 641 GLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY 720 (937)
T ss_pred ceeeeeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999988999999999999999999999999999888888776543211 11247888999999999999999
Q ss_pred hhccChhhhhHHHHHHHHHH-H-HHHHhhhcccCc-h-hhhHHHHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHH
Q 009329 378 SDDLNTSHILTGAFQDALKF-I-NSSLNMLKKKQP-K-QQQLSLIESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQL 450 (537)
Q Consensus 378 ~dd~n~~~al~~~L~~l~~~-~-N~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~ 450 (537)
++|++.+++.. |..|... + |-|++-.+.-.. + .....|...-..+...+..+..++ .|.|. -.+++|+.+
T Consensus 721 -~~Y~f~kVv~~-lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~-LaeEvwq~l 795 (937)
T KOG0433|consen 721 -NDYKFRKVVND-LQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPH-LAEEVWQHL 795 (937)
T ss_pred -HhccHHHHHHH-HHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHH-HHHHHHHhC
Confidence 99999999999 8888653 3 445554432111 1 122334433333444455555555 36666 467888765
No 68
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.91 E-value=1.1e-24 Score=219.56 Aligned_cols=276 Identities=16% Similarity=0.225 Sum_probs=153.5
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhH--HHHHHHHH------cCCC--------
Q 009329 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KIIRRAND------LGEN-------- 101 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~--ki~~~a~~------~g~~-------- 101 (537)
+..-++-||-||+|.+||||+|..+.+|+++|.|+.+|.+|.+|..+||+|. ||....-+ .|++
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 4567888999999999999999999999999999999999999999999984 33321111 1222
Q ss_pred --hHHHHHHHHHHHHHHHHHcCCCCCCCccchh----------------hhHHHHHHHHHHHHHCCceeeeecceeecC-
Q 009329 102 --PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS----------------DHMEQIKDMITQIINNDCAYVVEGDVFFAV- 162 (537)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s----------------~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~- 162 (537)
...++++|...|.+.|+.+||.. +++ ++| ++.+.+.+++....... .. .-|+..
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~-e~~-s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~---~~y~Pf~ 174 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEY-EFI-SQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RP---ETYSPFL 174 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT----EEE-ECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT-------TT--SEE
T ss_pred CCCccHHHHHHHHHHHHHHHcCCce-EEE-eHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CC---CCeeeee
Confidence 36799999999999999999973 321 121 34455666666554433 11 122222
Q ss_pred CCCCCCCCCcchhchhhh-cCCCccccccccCCccceecccccCCCCcccc-CCCCCCCchhhhhHHHHHhhcCCCeeEE
Q 009329 163 EKSPNYGRLSGQRLENNR-AGERVAVDSRKRNPADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIH 240 (537)
Q Consensus 163 ~~~~~yG~ls~~~l~~~~-~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~-~wG~g~PgWhiecs~m~~~~~g~~~dih 240 (537)
.-|+.||++....+.+.. .+.++...+ ...|...+.+ .=|.|...|.++++ |.+.++ .+|+.
T Consensus 175 piC~~cGri~tt~v~~~d~~~~~v~Y~c-------------~~cG~~g~~~i~~g~gKL~WkvDW~-mRW~~l--gVdfE 238 (360)
T PF01921_consen 175 PICEKCGRIDTTEVTEYDPEGGTVTYRC-------------EECGHEGEVDITGGNGKLQWKVDWP-MRWAAL--GVDFE 238 (360)
T ss_dssp EEETTTEE--EEEEEEE--SSSEEEEE---------------TTS---EEETTTT-EEE-HHHHHH-HHHHHT--T-SEE
T ss_pred eeccccCCcccceeeEeecCCCEEEEEe-------------cCCCCEEEEecCCCcccccCCCcCh-hhhhhc--Cceec
Confidence 248999996554444332 122232211 1122211111 11446667888875 456667 48999
Q ss_pred EecccCcCccchhhHHHhhh---ccCCCCceEEEEeeeeeeCCc-cccccCCCcccHhHHHHhcChhhHHHHHhhcCCCC
Q 009329 241 GGGIDLIFPHHENEIAQSCA---ACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316 (537)
Q Consensus 241 ~~G~Dl~f~H~~~~~a~~~a---~~~~~~~~~~~h~g~v~~~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~ 316 (537)
.+|+||.-+-.....+...| ++.+||. . +..+|++++|. |||||+||+++++|+|+-+.|++|||+++++.+.+
T Consensus 239 p~GKDH~~~GGS~d~~~~I~~~i~g~~pP~-~-~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~ 316 (360)
T PF01921_consen 239 PFGKDHASPGGSYDTSKRIAREILGYEPPV-P-FPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNK 316 (360)
T ss_dssp EEEHHHHCTTSHHHHHHHHHHHCC-----E-E-EEE--EEES--------------HHHHHTTS-HHHHHHHHHCS-TTS
T ss_pred cCCCccCCCCCChhhHHHHHHHHhCCCCCC-C-CCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCc
Confidence 99999666555555554433 4445544 3 56799999776 99999999999999999999999999999998999
Q ss_pred CcccCHH-HHHHHHHHHHHHHHH
Q 009329 317 PLNYSVL-QLDSASDAVFYIYQT 338 (537)
Q Consensus 317 ~~~fs~~-~l~~~~~~l~~l~~~ 338 (537)
..+|+.+ .+-.....+.++.+.
T Consensus 317 ~~~~~~~~~i~~~~Deyd~~~~~ 339 (360)
T PF01921_consen 317 AKDFSFDLVIPRLYDEYDRLERK 339 (360)
T ss_dssp -EEE--STTHHHHHHHHHHHHHH
T ss_pred ceEeccCcchHHHHHHHHHHHHH
Confidence 9999888 776666665544433
No 69
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.2e-24 Score=219.89 Aligned_cols=277 Identities=16% Similarity=0.146 Sum_probs=186.9
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhH--HHH---H--HH--HHcCCC--------
Q 009329 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KII---R--RA--NDLGEN-------- 101 (537)
Q Consensus 39 ~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~--ki~---~--~a--~~~g~~-------- 101 (537)
.--++.+|.||+|.+||||+|..+.+|+++|.|+.+|++|.+|.-.||+|. |+. - .+ +-.|++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 446788899999999999999999999999999999999999999999984 221 0 11 123443
Q ss_pred --hHHHHHHHHHHHHHHHHHcCCCCCCCccchh----------------hhHHHHHHHHHHHHHCCceeeeecceeecCC
Q 009329 102 --PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS----------------DHMEQIKDMITQIINNDCAYVVEGDVFFAVE 163 (537)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s----------------~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~ 163 (537)
...+++++...|.+.|+.+||.. + +.++| ++.+++.+++.+-..+ ....+.|--..
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~-E-~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~----~~~e~~~P~~p 172 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV-E-FVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR----ELEEDWSPFMP 172 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce-E-EEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC----cccCCceeccc
Confidence 47899999999999999999973 3 23333 3445555555555444 11222222233
Q ss_pred CCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEec
Q 009329 164 KSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (537)
Q Consensus 164 ~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G 243 (537)
-|+.||++....+.+.....+++..+...+. -.+--. =|.+.-.|.+++. |.+.+| .+|+...|
T Consensus 173 iC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~--g~v~ir-----------~g~~KL~WRvdWp-~RW~~l--gVd~EPfG 236 (521)
T COG1384 173 ICEKCGRILTTPVIEWDGEGTVEYRCECGHE--GEVDIR-----------GGEGKLPWRVDWP-MRWAAL--GVDFEPFG 236 (521)
T ss_pred cccccCCcceeEEEEecCCceEEEEecCCcc--ceeecc-----------ccCcccccCcCcc-chhhcc--CcccccCC
Confidence 5999999665555554323345443322111 001000 1122222333322 233445 48999999
Q ss_pred ccCcCccchhhHHHhhh--ccC-CCCceEEEEeeeeeeCC-ccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcc
Q 009329 244 IDLIFPHHENEIAQSCA--ACQ-DSNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLN 319 (537)
Q Consensus 244 ~Dl~f~H~~~~~a~~~a--~~~-~~~~~~~~h~g~v~~~G-~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~ 319 (537)
|||.-+-..+..+...+ ..+ +||..+ ..+|++++| +|||||+||+|+++|+|+-+.|++|||+++++.+++.++
T Consensus 237 KDH~a~ggSydtg~~I~~ei~g~~pP~~~--~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r~~~ 314 (521)
T COG1384 237 KDHAAAGGSYDTGKRIAREIFGYEPPVPF--VYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHID 314 (521)
T ss_pred cccccccCchHHHHHHHHHhcCCCCCCCC--ceEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCCccee
Confidence 99655555555443333 234 666655 358999977 899999999999999999999999999999998888888
Q ss_pred cCHHH-HHHHHHHHHHHHHHH
Q 009329 320 YSVLQ-LDSASDAVFYIYQTL 339 (537)
Q Consensus 320 fs~~~-l~~~~~~l~~l~~~~ 339 (537)
|+.+. +.+....+.++...+
T Consensus 315 ~d~~~~il~lvDEydr~e~~Y 335 (521)
T COG1384 315 FDFDLGILKLVDEYDRLERIY 335 (521)
T ss_pred cCCCCChhHHHHHHHHHHHHH
Confidence 88888 777776665554443
No 70
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.1e-22 Score=200.92 Aligned_cols=358 Identities=14% Similarity=0.132 Sum_probs=255.8
Q ss_pred CCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHH---H-------------------
Q 009329 35 IVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI---I------------------- 92 (537)
Q Consensus 35 ~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki---~------------------- 92 (537)
...++|.+-.++|+....+|+||+|++|++|.|+|.|++.|++|..++++.|||+.. |
T Consensus 185 l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgD 264 (656)
T KOG4426|consen 185 LSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGD 264 (656)
T ss_pred cceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchh
Confidence 345788899999999999999999999999999999999999999999999997531 1
Q ss_pred -------------------HHHHH-----cCCC------hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHH
Q 009329 93 -------------------RRAND-----LGEN------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMI 142 (537)
Q Consensus 93 -------------------~~a~~-----~g~~------~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i 142 (537)
.+|.+ +|.+ |..+|+-..++|...+++|.|+. .....|.|.+.|.+++
T Consensus 265 LQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l--~e~GESFYq~~m~~vv 342 (656)
T KOG4426|consen 265 LQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISL--KERGESFYQDRMAEVV 342 (656)
T ss_pred HHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchH--hhcchhhhhhHHHHHH
Confidence 11111 1222 57899999999999999999973 3445678999999999
Q ss_pred HHHHHCCceeeeec-ceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCch
Q 009329 143 TQIINNDCAYVVEG-DVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGW 221 (537)
Q Consensus 143 ~~L~~~G~ay~~~~-~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgW 221 (537)
+.|..+|+..+.+| .+.|... |+- .+ ++-|+ +|..++++.
T Consensus 343 eel~~kglvee~~Gr~i~f~~g----~~I----PL---------------------tvVKS--DGGftYdts-------- 383 (656)
T KOG4426|consen 343 EELKSKGLVEEDDGRRIMFPEG----CDI----PL---------------------TVVKS--DGGFTYDTS-------- 383 (656)
T ss_pred HHHhcCCceeecCCceEeccCC----CCc----ce---------------------EEEec--CCCcccccc--------
Confidence 99999999988876 4555432 221 00 01111 121122210
Q ss_pred hhhhHHHHHhhc--CCCeeEEEecccCcCccchhhH---HHhhhccCCCCceEEEEeeeeee---CCccccccCCCcccH
Q 009329 222 HIECSAMSAHYL--SSKFDIHGGGIDLIFPHHENEI---AQSCAACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTI 293 (537)
Q Consensus 222 hiecs~m~~~~~--g~~~dih~~G~Dl~f~H~~~~~---a~~~a~~~~~~~~~~~h~g~v~~---~G~KMSKS~Gn~i~~ 293 (537)
..+|+..+.+ .....|++. |.-...|.+.+ |+..++..+..+++ -|.||..+ ||+|+-++.|.+|.+
T Consensus 384 --DlaAl~yRl~EEkadwiIYVv--D~GQs~Hf~t~fkAar~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL 458 (656)
T KOG4426|consen 384 --DLAALKYRLNEEKADWIIYVV--DSGQSQHFNTIFKAARKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRL 458 (656)
T ss_pred --hHHHHHHHHHHhhcCeEEEEe--eCchhHHHHHHHHHHHHcCccCCCccce-eeeeeeeEEccCcccccccccceeeH
Confidence 0111111111 012344444 43333443433 44444445566666 78888776 788999999999999
Q ss_pred hHHHHh-----------------------------cChhhHHHHHhhcCCCCCcccCHHHHHHHH-HHHHHHHHHHHHHH
Q 009329 294 RQITER-----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSAS-DAVFYIYQTLQDCE 343 (537)
Q Consensus 294 ~dll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~-~~l~~l~~~~~~~~ 343 (537)
.|||++ ++=..+.|.-|++..-++..||.+.|.+-+ |..-||.|++.|++
T Consensus 459 ~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIc 538 (656)
T KOG4426|consen 459 LDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRIC 538 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHH
Confidence 999962 223347888888888899999999987765 45668999999999
Q ss_pred HhcCccccC-----------C---CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccC
Q 009329 344 VALSPFQEH-----------G---KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 409 (537)
Q Consensus 344 ~~l~~~~~~-----------~---~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~ 409 (537)
++.++.... + ..++.+..+-..+.++.+.+.+++ +++ +++.++.|+++++..|..||++|....
T Consensus 539 SI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~-~~L-~lh~lC~y~y~l~t~Ft~FY~~Cyv~e 616 (656)
T KOG4426|consen 539 SIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKAL-DSL-FLHVLCDYLYELATLFTEFYDSCYVIE 616 (656)
T ss_pred HHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHhhccEEec
Confidence 998775421 0 112234556677888888899997 776 799999999999999999999988653
Q ss_pred chh------hhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009329 410 PKQ------QQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 410 ~~~------~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
..+ .+..|+.++.++..+++..+.+|||.|-
T Consensus 617 ~~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi~pV 653 (656)
T KOG4426|consen 617 KNKEGEIPFVNMSRLLLCEATAAVMRKCFHILGIKPV 653 (656)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHhhHhhCCccc
Confidence 211 2357888999999999999999999763
No 71
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.90 E-value=5.3e-23 Score=212.85 Aligned_cols=242 Identities=20% Similarity=0.141 Sum_probs=158.4
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHH-------HHc----------
Q 009329 36 VPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA-------NDL---------- 98 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a-------~~~---------- 98 (537)
.+.+|.+-.++|+|.||+||||+|++++||+|+|+|++.||+|.-.+.+.|+|..+-.-+ .+.
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 97 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHL 97 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccch
Confidence 457899999999999999999999999999999999999999999999999985432111 100
Q ss_pred --------------------------------------CCChHHHHHH-HHHHHHHHHHHcCCCCCCCccchh--hhHHH
Q 009329 99 --------------------------------------GENPLSLSNR-YCQEYLVDMADLQCLPPTYQPRVS--DHMEQ 137 (537)
Q Consensus 99 --------------------------------------g~~~~~~~~~-~~~~~~~~l~~l~i~~~~~~~r~s--~~~~~ 137 (537)
.....++... ..+...++|.++++. .|.+...+ .+...
T Consensus 98 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~-fDv~~~E~Es~~~~~ 176 (354)
T PF00750_consen 98 EDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIR-FDVWFDESESFYSGK 176 (354)
T ss_dssp HHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT----SEEEEHCHHHHTTH
T ss_pred hhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHH-hCcCcccchhhhhhH
Confidence 0112334444 667888889999998 47666334 35567
Q ss_pred HHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCC
Q 009329 138 IKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPG 217 (537)
Q Consensus 138 ~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g 217 (537)
+.++++.|.++|++|+.+|.++++.+.+ |.. .|.+|-|+ +|
T Consensus 177 v~~vl~~L~e~g~~~~~dGa~~i~~~~~---g~~-----------------------k~~Vl~ks--DG----------- 217 (354)
T PF00750_consen 177 VDEVLERLKEKGLLYESDGALWIDLTKF---GDD-----------------------KDRVLRKS--DG----------- 217 (354)
T ss_dssp HHHHHHHHHCTTTEEEETTEEEEEGCCT---STS-----------------------S-EEEEET--TS-----------
T ss_pred HHHHHHHHHhCCcEEecCCcEEEechhc---CCC-----------------------CcceEEcC--CC-----------
Confidence 8899999999999999999999987543 221 12333333 22
Q ss_pred CCchhhh-hHHHHHhh--cCCCeeEEEecccCcCccchh---hHHHhhhccCCC-CceEEEEe--eeeee-CCc-ccccc
Q 009329 218 RPGWHIE-CSAMSAHY--LSSKFDIHGGGIDLIFPHHEN---EIAQSCAACQDS-NVSYWMHN--GHVTN-NNE-KMSKS 286 (537)
Q Consensus 218 ~PgWhie-cs~m~~~~--~g~~~dih~~G~Dl~f~H~~~---~~a~~~a~~~~~-~~~~~~h~--g~v~~-~G~-KMSKS 286 (537)
.+.|... .++...++ ++....|++.|.| |+.. -.+.+.+++..+ -.++ .|. |+++. +|+ ||||+
T Consensus 218 t~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~----q~~hf~~l~~~l~~lg~~~~~~~~-~H~~~g~vl~~~gk~~mstR 292 (354)
T PF00750_consen 218 TSTYLTRDIAYHLYRFEEYGFDKIIYVVGAD----QKGHFKQLFAILEALGYDPEAVKL-QHVSFGVVLLKDGKVKMSTR 292 (354)
T ss_dssp EB-HHHHHHHHHHHHHCCSS-SEEEEEEEGG----GHHHHHHHHHHHHHTT-HHHHCTE-EEEEE-EEEETTBEESS-TT
T ss_pred ceEEEcchHHHHHHHHhhhccccEEEEecCc----hhhHHHHHHHHHHHhCCCCCCCEE-EEEEEEEEEcCCCCccccCC
Confidence 3333221 22222333 6667789999999 5522 223333344311 1233 343 55544 787 89999
Q ss_pred CCCcccHhHHHH--------------------------hcChhhHHHHHhhcCCCCCcccCH
Q 009329 287 LGNFFTIRQITE--------------------------RYHPLALRHFLISAHYRSPLNYSV 322 (537)
Q Consensus 287 ~Gn~i~~~dll~--------------------------~~~~d~lR~~ll~~~~~~~~~fs~ 322 (537)
+||+|+++|||+ .++..++||++|+....+++.|+|
T Consensus 293 ~G~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 293 KGNVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp TTSSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred CCCceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 999999999999 577889999999999999998875
No 72
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.85 E-value=2e-20 Score=171.74 Aligned_cols=155 Identities=28% Similarity=0.370 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHH
Q 009329 323 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 402 (537)
Q Consensus 323 ~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~ 402 (537)
+.|.++.+.+.+|++++.++. .+. .. ...+..+.+.|.+||+||||||.|++. |+++++.+|.++
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-~~~--------~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~-l~~l~k~~n~~~ 66 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-PTT--------VD-----IDWGEPFAERFIAAMDDDFNTPEALAV-LFELAREINRLK 66 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-hcc--------cc-----hhhHHHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHh
Confidence 568889999999998887763 110 00 112345678999999999999999999 999999999987
Q ss_pred hhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhcCCChh
Q 009329 403 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFS 482 (537)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~~Kdf~ 482 (537)
+... . .+..+...+..++.+|||... ........ .....+..++.|+.|+++|++||++|||+
T Consensus 67 ~~~~----~--------~~~~~~~~l~~~~~vLGl~~~-~~~~~~~~----~~~~~~~~~~~v~~Ll~~R~~aR~~Kdf~ 129 (156)
T cd07963 67 KEDI----E--------KAAALAALLKALGGVLGLLQQ-DPEAFLQG----GTGEGGLSVAEIEALIAQRNQARKAKDWA 129 (156)
T ss_pred ccch----H--------HHHHHHHHHHHHHhccCCCCC-CHHHHHhc----cccccccCHHHHHHHHHHHHHHHHhcCHH
Confidence 5321 0 123345667778899998542 11111000 00001122456999999999999999999
Q ss_pred HhHHHHHHcHhCCCEEEecCCceEEEe
Q 009329 483 KSDQIRADLTRKGIALMDMGKETIWRP 509 (537)
Q Consensus 483 ~AD~IRd~L~~~GI~l~D~~~Gt~W~~ 509 (537)
+||+||++|.++||.|+|||+||+|++
T Consensus 130 ~AD~IRd~L~~~Gi~i~Dt~~Gt~w~~ 156 (156)
T cd07963 130 EADRIRDELAAQGIILEDSPEGTTWRR 156 (156)
T ss_pred HHHHHHHHHHHCCcEEEECCCCceeeC
Confidence 999999999999999999999999974
No 73
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.85 E-value=7.9e-21 Score=183.18 Aligned_cols=208 Identities=21% Similarity=0.206 Sum_probs=152.4
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC
Q 009329 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (537)
Q Consensus 43 y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i 122 (537)
.=|+|||||++||||+|++++.++++| ++++.++.+|||+|++.+ .....+.+.|.++|++||+
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~wLGl 67 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEWLGV 67 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHHcCC
Confidence 348999999999999999999999999 789999999999998664 1233456669999999999
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceeccc
Q 009329 123 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKA 202 (537)
Q Consensus 123 ~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~ 202 (537)
. +|..+++|+|++.+++++++|+++|+||. . +. .| .||.+
T Consensus 68 ~-~d~~~~qS~r~~~y~~~~~~Li~~G~aY~---------~--~~-------------~~------------~~~~i--- 107 (240)
T cd09287 68 K-WDEVVIASDRIELYYEYARKLIEMGGAYV---------H--PR-------------TG------------SKYRV--- 107 (240)
T ss_pred C-CCCccchhccHHHHHHHHHHHHHcCCccc---------C--cc-------------cC------------CcEEE---
Confidence 6 67888999999999999999999999995 0 00 01 14443
Q ss_pred ccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHH---hhhccCCCCceEEEEeeeeeeC
Q 009329 203 AKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVTNN 279 (537)
Q Consensus 203 ~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~---~~a~~~~~~~~~~~h~g~v~~~ 279 (537)
+|.+|++|+.. ....| ++..+-|.| |..+.+.| ..+++..+ +.+ .|...++.+
T Consensus 108 ---------------~ptY~la~vVD-D~~~g--IThViRg~d----~~~~t~~q~~l~~~Lg~~~-P~~-~H~pll~~~ 163 (240)
T cd09287 108 ---------------WPTLNFAVAVD-DHLLG--VTHVLRGKD----HIDNTEKQRYIYEYFGWEY-PET-IHWGRLKIE 163 (240)
T ss_pred ---------------EEccccceeee-ccccC--CCeEEechh----hhhCCHHHHHHHHHcCCCC-CcE-EeeeeecCC
Confidence 26677665321 11223 344445668 44444444 45665443 445 688999889
Q ss_pred CccccccCCC---------------cccHhHHHH-hcChhhHHHHHhhc-CCCCCcccCHHHHHHHHH
Q 009329 280 NEKMSKSLGN---------------FFTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD 330 (537)
Q Consensus 280 G~KMSKS~Gn---------------~i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~ 330 (537)
|+||||+.+. ..++..+.+ ++.|++++-|+... --.++..++++.+....+
T Consensus 164 ~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 164 GGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred CCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 9999999842 235666554 69999999988775 335777999998876554
No 74
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=6.7e-19 Score=184.32 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=146.9
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCC-CceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhcC
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDS-NVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~-~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 313 (537)
|.|+-.-|.|...-+.--....+.+++++| +.++ +.||.|+- ||+|||||+.|.-.|..++++||+|++|+||+++|
T Consensus 554 PadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSP 632 (1070)
T KOG0434|consen 554 PADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSP 632 (1070)
T ss_pred chHhhhhccccccchhhHHHHHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCc
Confidence 556777788865544422234456677765 4566 88999988 89999999999999999999999999999999984
Q ss_pred C--CCCcccCHHHHHHHHHHHH-HHHHHHHHHHHh---cCcccc--------CCCCCCCChHHHHHHHHHHHHHHHHHhh
Q 009329 314 Y--RSPLNYSVLQLDSASDAVF-YIYQTLQDCEVA---LSPFQE--------HGKTARINPAAEDCINKLRDEFHARMSD 379 (537)
Q Consensus 314 ~--~~~~~fs~~~l~~~~~~l~-~l~~~~~~~~~~---l~~~~~--------~~~~~~~~~~l~~~l~~~~~~v~~am~d 379 (537)
. ..++.|..+.+.+....+. -++|++..+... +.+... ..+.+-.|+|+......+..-+.+.| +
T Consensus 633 VvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM-~ 711 (1070)
T KOG0434|consen 633 VVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM-D 711 (1070)
T ss_pred cccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-H
Confidence 4 5789999999998766422 344444333221 121100 01223468999999999999999999 9
Q ss_pred ccChhhhhHHHHHHHHHHH-HHHHhhhcc-cCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 380 DLNTSHILTGAFQDALKFI-NSSLNMLKK-KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 380 d~n~~~al~~~L~~l~~~~-N~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+....++.. |..|+..+ |+|+.-++. .+...........+..+..+|..+..++| +.|. -++-+++.++
T Consensus 712 ~YrLytVvp~-llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF-~tE~iyq~Lk 784 (1070)
T KOG0434|consen 712 QYRLYTVVPR-LLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPF-FTEYIYQNLK 784 (1070)
T ss_pred heehhhhHHH-HHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHH
Confidence 9999999999 99999876 888765442 22111112234445566667777777887 5554 4555666654
No 75
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.9e-17 Score=168.09 Aligned_cols=358 Identities=15% Similarity=0.085 Sum_probs=244.6
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHH------------------------
Q 009329 37 PGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKII------------------------ 92 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~------------------------ 92 (537)
.+++.+-.++|++..+.|+||.|+.+++-.+++..+..|++|+-++...|+|..+-
T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~ 188 (567)
T KOG1195|consen 109 GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLF 188 (567)
T ss_pred CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHH
Confidence 46888999999999999999999999999999999999999999999999963210
Q ss_pred -------HHHHH---------------cC------CChHHHHHHHHHHHHHHHHHcCCCCCCCccchh-hhHHHHHHHHH
Q 009329 93 -------RRAND---------------LG------ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS-DHMEQIKDMIT 143 (537)
Q Consensus 93 -------~~a~~---------------~g------~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s-~~~~~~~~~i~ 143 (537)
.-|.+ ++ .-|+.+.+--+..+.+.+++|||. +|.++..| -..+.+++..+
T Consensus 189 dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~-FD~y~gESqv~~e~~~~~~d 267 (567)
T KOG1195|consen 189 DVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVK-FDEYSGESQVSNEKMQEALD 267 (567)
T ss_pred HHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhcee-eeeccchHHHHHHHHHHHHH
Confidence 00111 01 114557777788889999999998 68888888 45567888888
Q ss_pred HHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhh
Q 009329 144 QIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI 223 (537)
Q Consensus 144 ~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhi 223 (537)
.+...|+.-..+|...++.+....-+ ....+. -.+|. .|+... .|
T Consensus 268 ~~rs~~l~~e~dG~~vidL~~~~~~~--~~~~V~-ksdgt--------------tLYltR------------------di 312 (567)
T KOG1195|consen 268 LLRSANLTEEIDGTIVIDLSKIDKKA--GKAVVQ-KSDGT--------------TLYLTR------------------DI 312 (567)
T ss_pred HHHhcCCcccCCCcEEEEecccCccc--ceEEEE-cCCCc--------------eehHHH------------------HH
Confidence 88888877777888998876432110 000000 00011 111110 01
Q ss_pred hhHHHHHhh--cCCCeeEEEe--cccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHh
Q 009329 224 ECSAMSAHY--LSSKFDIHGG--GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 224 ecs~m~~~~--~g~~~dih~~--G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~ 299 (537)
++...++ +....-|++. |.|. |..-..-+.++++.. |+.-.-|..|..+.| ||+++|.++.+.|++++
T Consensus 313 --aaal~Rl~~y~fdr~iYVvd~~Q~~---hf~~lf~ilk~mg~~-~a~~~qHV~~G~v~G--msTRkG~~~fl~dil~e 384 (567)
T KOG1195|consen 313 --AAALDRLEKYSFDRLIYVVDSQQKD---HFCQLFEILKKMGFD-WAKKLQHVNFGRVQG--MSTRKGKVVFLDDILEE 384 (567)
T ss_pred --HHHHHHHHhcCcceEEEEechHHHH---HHHHHHHHHHHhCch-hhhhcceeccccccc--ccccCCceeeHHHHHHH
Confidence 1111111 2222334444 2231 433333444555433 333324555555555 99999999999999862
Q ss_pred ----------------------------cChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHH-HHHHHHHHHHHhcCccc
Q 009329 300 ----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVF-YIYQTLQDCEVALSPFQ 350 (537)
Q Consensus 300 ----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~-~l~~~~~~~~~~l~~~~ 350 (537)
.+..++..-.+.....++..|+|+.+-+....-+ +|+|++.|+.++.++..
T Consensus 385 ~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~ 464 (567)
T KOG1195|consen 385 AREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFS 464 (567)
T ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhcc
Confidence 5677888877777778899999999988876544 89999999999887764
Q ss_pred cCC-----------CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCch-hhhHHHH
Q 009329 351 EHG-----------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLI 418 (537)
Q Consensus 351 ~~~-----------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~-~~~~~~~ 418 (537)
... ..++.-..++..+..+++.+..+| +++.. .-+-.||+.++.++++++....+.... +..-.|+
T Consensus 465 ~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~-~~lV~YL~~La~a~s~~yk~l~V~d~~~eia~aRL 542 (567)
T KOG1195|consen 465 DVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEP-CTLVTYLFKLAHAVSSAYKILWVKDSPMEIALARL 542 (567)
T ss_pred ccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-Hhhcc-hhHHHHHHHHHHHHHhHHhheeecCCcHHHHHHHH
Confidence 210 011223456778899999999999 88875 555566999999999999877665322 2234688
Q ss_pred HHHHHHHHHHHHHHhhcccCCC
Q 009329 419 ESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 419 ~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
.++.++..+|.+++.+|||.|-
T Consensus 543 ~Lf~AvRqVL~ngm~lLGitPv 564 (567)
T KOG1195|consen 543 LLFSAVRQVLNNGMRLLGITPV 564 (567)
T ss_pred HHHHHHHHHHHhHHHHhCCCcc
Confidence 8899999999999999999873
No 76
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.74 E-value=6.5e-17 Score=172.55 Aligned_cols=249 Identities=20% Similarity=0.221 Sum_probs=155.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. +.-.++..|+|.|. ......+.+.+.++|++|||.++
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~d 68 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAKH-----TGGEFILRIEDTDL-------------ERNIEEAEEAILEGLKWLGISWD 68 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------ccCChHHHHHHHHHHHHCCCCCC
Confidence 5889999999999999888888883 44588888998874 22334588999999999999864
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCC-C---CCcchhchh-hhcCCCcc
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNY-G---RLSGQRLEN-NRAGERVA 186 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~y-G---~ls~~~l~~-~~~g~~~~ 186 (537)
....++|++.+.+.+++++|+++|.|| .|||... .|.| | .++..+..+ ...|...-
T Consensus 69 e~~~~QS~r~~~y~~~~~~L~~~g~aY-----~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (470)
T TIGR00464 69 EGPYYQSQRLDIYKKYAKELLEEGLAY-----RCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPV 143 (470)
T ss_pred CCeeehhCCHHHHHHHHHHHHHcCCEE-----ecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCce
Confidence 456688999999999999999999999 7787652 2233 2 233221111 11222100
Q ss_pred ccccccCCccc-eecccccCCCCccc--------cCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHH
Q 009329 187 VDSRKRNPADF-ALWKAAKAGEPSWD--------SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (537)
Q Consensus 187 ~~~~k~~~~df-~lwk~~~~g~~~w~--------~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~ 257 (537)
+.- |- |.+- ..|...-.|.++.+ .-...|.|.+|++|... ....|.+..| -|.| |+.+.+.|
T Consensus 144 iR~-k~-~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vd-D~~~~ithvI--rG~d----~~~~t~~~ 214 (470)
T TIGR00464 144 VRF-KI-PQEAVVSFNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVVD-DYLMKITHVI--RGED----HISNTPKQ 214 (470)
T ss_pred EEE-Ec-CCCCceeEEecccceEEecCccCCCeEEEecCCCcccccHHHHH-HHhCCCCEEE--ECch----hhcCHHHH
Confidence 000 00 0000 01111111111110 11235789999877543 2223544444 7789 55554444
Q ss_pred ---hhhccCCCCceEEEEeeee-eeCCccccccCCCcccHhHHHHh-cCh------------------------hhHHHH
Q 009329 258 ---SCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITER-YHP------------------------LALRHF 308 (537)
Q Consensus 258 ---~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~dll~~-~~~------------------------d~lR~~ 308 (537)
..+++. +.+++ .|..++ +.+|.||||+.| .++++++++. |.| +++|+|
T Consensus 215 ~~l~~aLg~-~~p~~-~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f 291 (470)
T TIGR00464 215 ILIYQALGW-KIPVF-AHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIF 291 (470)
T ss_pred HHHHHHcCC-CCCeE-EEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhc
Confidence 455553 33445 777774 348999999999 7899999885 344 456666
Q ss_pred HhhcCCCCCcccCHHHHHHHH
Q 009329 309 LISAHYRSPLNYSVLQLDSAS 329 (537)
Q Consensus 309 ll~~~~~~~~~fs~~~l~~~~ 329 (537)
.++....+++.|+++.+.-..
T Consensus 292 ~l~~~~~~~~~fd~~kL~~~N 312 (470)
T TIGR00464 292 SLNRVSKSPAKFDWKKLQWLN 312 (470)
T ss_pred CcccCCCCCCeecHHHHHHHH
Confidence 666655677788888755443
No 77
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.72 E-value=1.6e-16 Score=165.86 Aligned_cols=245 Identities=18% Similarity=0.209 Sum_probs=154.8
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. +.-.|+.-|+|.|. ......+.+.+.++|++||+.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~-----~gG~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WlGl~w- 65 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ-----QNEDFLIRIEDTDK-------------ERNIEGKDKEILEILNLFGISW- 65 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CcCChHHHHHHHHHHHHcCCCC-
Confidence 5889999999999999888888875 55678888999885 1233458899999999999985
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCC-C---CCcchhchhhhcCCCccc
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNY-G---RLSGQRLENNRAGERVAV 187 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~y-G---~ls~~~l~~~~~g~~~~~ 187 (537)
|.-.++|++.+.+.+++++|+++|.|| .|||... -+.| | .++..+. +..|...-+
T Consensus 66 De~y~QSeR~~~Y~~~a~~Li~~G~AY-----~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~--~~~g~~~~i 138 (433)
T PRK12410 66 DKLVYQSENLKFHRQMAEKLLSEKKAF-----ACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV--LNCNKPFVV 138 (433)
T ss_pred CCCeehhccHHHHHHHHHHHHHcCCee-----eecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH--HhcCCCeEE
Confidence 666789999999999999999999999 7777652 1122 1 1222111 111221000
Q ss_pred cccccCCccceecccccCCCCcc--------ccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHh-
Q 009329 188 DSRKRNPADFALWKAAKAGEPSW--------DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS- 258 (537)
Q Consensus 188 ~~~k~~~~df~lwk~~~~g~~~w--------~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~- 258 (537)
.- | .|.....|...-.|.+++ -.-...|.|.+|++|+.. ....|.+ -.+-|.| |..|.+.|.
T Consensus 139 R~-k-~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVD-D~~mgIT--hViRG~d----~l~~tp~Qi~ 209 (433)
T PRK12410 139 RL-K-KPNHTMSFTDAIKGEVSFEPDEIDSFVILRADKTPTYNFACAVD-DMLYDIS--LIIRGED----HVSNTPKQIL 209 (433)
T ss_pred EE-E-cCCCceeeeeccceeEEeccccCCCeEEEcCCCCccccccchhc-hhhcCCC--EEEechh----hhhCcHHHHH
Confidence 00 0 000001111111111111 111235788999877542 2234433 3344668 777766664
Q ss_pred --hhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHH-hcChhhHHHHHhhcCCC-CCcccCHHHHHH
Q 009329 259 --CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYR-SPLNYSVLQLDS 327 (537)
Q Consensus 259 --~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~-~~~~fs~~~l~~ 327 (537)
+|++.++|+.| .|...++. +|+||||+.|. +++.++.+ +|.|++++-|++...+. .+--|+.+.+.+
T Consensus 210 Ly~aLg~~~pp~f-~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli~ 281 (433)
T PRK12410 210 IREALGYNKEITY-AHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAIE 281 (433)
T ss_pred HHHHcCCCCCCeE-EEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHHH
Confidence 55654544444 88887655 89999999997 58888776 69999999998875321 133456655544
No 78
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.71 E-value=1.2e-16 Score=167.56 Aligned_cols=247 Identities=19% Similarity=0.209 Sum_probs=157.8
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|+++....++| .+...|+..|+|.|. . ...+.+.+.+.++|++|||. +
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar-----~~gG~fiLRIEDTD~---~----------Rs~~~~~~~I~e~L~wLGI~-~ 68 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYAR-----KHGGKFILRIDDTDL---E----------RSKQEYADAIAEDLKWLGIN-W 68 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH-----HhCCEEEEEeccCCc---c----------cchHHHHHHHHHHHHHcCCC-C
Confidence 588999999999999976666655 577899999999984 1 22356889999999999998 5
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCCC----CCcchhchh-hhcCCCcc
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYG----RLSGQRLEN-NRAGERVA 186 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~yG----~ls~~~l~~-~~~g~~~~ 186 (537)
|.+.+.|+.++.+.+++++|+++|+|| .|||... .|.|. .++..+... ...|....
T Consensus 69 De~y~QSer~~~y~~~~e~L~e~G~AY-----~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (445)
T PRK12558 69 DRTFRQSDRFDRYDEAAEKLKAAGRLY-----PCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPH 143 (445)
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCEE-----EecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCce
Confidence 778889998899999999999999999 6777652 12222 233222111 11122110
Q ss_pred ccccccCCccceecccccCCCCccc--------cCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHh
Q 009329 187 VDSRKRNPADFALWKAAKAGEPSWD--------SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258 (537)
Q Consensus 187 ~~~~k~~~~df~lwk~~~~g~~~w~--------~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~ 258 (537)
+.- |- +..-..|...-.|.+.++ .-...|.|.+|.+|+.. ....| ++-.+-|.| |..|.+.|.
T Consensus 144 iR~-k~-~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVD-D~~m~--ITHViRG~d----~l~~t~~q~ 214 (445)
T PRK12558 144 WRF-KL-DDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTLPSVVD-DIDMG--ITHIIRGED----HVTNTAVQI 214 (445)
T ss_pred EEE-ec-CCCceEEEEEeeeEeecccccCCCeEEEecCCCccccccceec-cccCC--CCEEEechh----hhhCCHHHH
Confidence 000 00 000011211111111111 11235779999877532 12223 333344568 666766654
Q ss_pred ---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHH-hcChhhHHHHHhhc--CCCCCcccCHHHHHHH
Q 009329 259 ---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA--HYRSPLNYSVLQLDSA 328 (537)
Q Consensus 259 ---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~--~~~~~~~fs~~~l~~~ 328 (537)
.|++.. ++.| .|.+.++. +|+|+||+.|. +++.++.+ +|.|++++-|++.- ++...--||.+.+.+.
T Consensus 215 ~l~~alg~~-~P~f-~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~ 288 (445)
T PRK12558 215 QIFEALGAK-PPVF-AHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAES 288 (445)
T ss_pred HHHHHhCCC-CCeE-EEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHh
Confidence 555433 3445 88888887 78999999987 68888876 69999999998774 3333344788887654
No 79
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.71 E-value=2.8e-16 Score=168.43 Aligned_cols=252 Identities=22% Similarity=0.251 Sum_probs=165.9
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||||++++.+.++| .|+..++..+||.|.+ +. ...|.+.|.++|++|||. +
T Consensus 99 aPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp~---R~----------~~e~~~~I~edL~wLGi~-~ 159 (560)
T TIGR00463 99 APNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDPR---RV----------KPEAYDMILEDLDWLGVK-G 159 (560)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCcc---cc----------cHHHHHHHHHHHHHcCCC-C
Confidence 699999999999999999999997 5778999999999873 21 224899999999999998 6
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC---------CC-CCCCCcch-hc---hhhhcCCC-------
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SP-NYGRLSGQ-RL---ENNRAGER------- 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~---------~~-~yG~ls~~-~l---~~~~~g~~------- 184 (537)
|..+++|+|++.+.+++++|+++|+|| ++||... .+ .|-.++.. .+ ++|..|..
T Consensus 160 d~~~~qSd~~~~y~~~a~~Li~~G~AY-----~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~l 234 (560)
T TIGR00463 160 DEVVYQSDRIEEYYDYCRKLIEMGKAY-----VCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVV 234 (560)
T ss_pred CccccccccHHHHHHHHHHHHHcCCce-----eecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 888999999999999999999999999 6666542 11 12223322 11 22333321
Q ss_pred -ccccccccC--CccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHh---
Q 009329 185 -VAVDSRKRN--PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS--- 258 (537)
Q Consensus 185 -~~~~~~k~~--~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~--- 258 (537)
+..+..-.| -+|+++++......+.--..| .+.|.++++|+.. ....|.+.. +-|.| |..+.+.|.
T Consensus 235 R~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~-~~~PtYdfA~~VD-D~l~gITHv--iRg~E----~~~nT~rq~yl~ 306 (560)
T TIGR00463 235 RAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKY-KVYPTMDFSVPID-DHLLGVTHV--LRGKD----HIDNERKQQYIY 306 (560)
T ss_pred EEECCCcCCCccccCcEEEEecCCCccccCCEE-EEEeccccceEee-cccCCCCeE--Eechh----hhcCCHHHHHHH
Confidence 111111112 268888875422111000111 1478888877432 223343333 33558 554444443
Q ss_pred hhccCCCCceEEEEeeeeeeC-CccccccCC-------C--------cccHhHHHH-hcChhhHHHHHhhc-CCCCCccc
Q 009329 259 CAACQDSNVSYWMHNGHVTNN-NEKMSKSLG-------N--------FFTIRQITE-RYHPLALRHFLISA-HYRSPLNY 320 (537)
Q Consensus 259 ~a~~~~~~~~~~~h~g~v~~~-G~KMSKS~G-------n--------~i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~f 320 (537)
.+++. ..+.+ .|.+++.++ |.|+|||+. . ..|+..+.. ++.|++||-|++.. .-..+..+
T Consensus 307 ~~lg~-~~P~~-~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i 384 (560)
T TIGR00463 307 MYFGW-ELPEF-IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNL 384 (560)
T ss_pred HHcCC-CCCeE-EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCcee
Confidence 33333 33455 888999985 569998762 1 135555554 69999999999987 44578899
Q ss_pred CHHHHHHHHHH
Q 009329 321 SVLQLDSASDA 331 (537)
Q Consensus 321 s~~~l~~~~~~ 331 (537)
+|+.|.+..+.
T Consensus 385 ~~~~l~~~nr~ 395 (560)
T TIGR00463 385 SWKNIYAFNKK 395 (560)
T ss_pred eHHHHHHHHHH
Confidence 99999876653
No 80
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.69 E-value=5.2e-16 Score=165.72 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=143.7
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. +.-.|+..|+|.|. ......+.+.+.++|++|||.++
T Consensus 10 APSPtG~lHiG~~rtal~n~l~Ar~-----~~G~fiLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~D 71 (476)
T PRK01406 10 APSPTGYLHIGGARTALFNWLFARH-----HGGKFILRIEDTDQ-------------ERSTEEAEEAILEGLKWLGLDWD 71 (476)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHCCCCCC
Confidence 5889999999999999888888885 45688889999874 23345588999999999999854
Q ss_pred CC-------ccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCC----CCCcchhch-hh
Q 009329 126 TY-------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNY----GRLSGQRLE-NN 179 (537)
Q Consensus 126 ~~-------~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~y----G~ls~~~l~-~~ 179 (537)
.. -.++|++.+.+.+++++|+++|+|| .|||... .|.| -.++..+.. .+
T Consensus 72 e~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY-----~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~ 146 (476)
T PRK01406 72 EGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAY-----YCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARL 146 (476)
T ss_pred CCCccCCCCceehhcCHHHHHHHHHHHHHcCCee-----ecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Confidence 33 3588999999999999999999999 7777552 1222 123322211 11
Q ss_pred hcCCCc--cccccc------------------cCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeE
Q 009329 180 RAGERV--AVDSRK------------------RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDI 239 (537)
Q Consensus 180 ~~g~~~--~~~~~k------------------~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~di 239 (537)
..|... .+.... ..-.|+++.| ..|.|.+|..+. +.....|.+..|
T Consensus 147 ~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R-------------sDG~ptY~~a~v-VdD~~~~ithvI 212 (476)
T PRK01406 147 AAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILR-------------SDGTPTYNFAVV-VDDHLMGITHVI 212 (476)
T ss_pred hCCCCeeEEEEcCCCCceEEEEeccceEEeccccCCCcEEEe-------------cCCCccccchHH-HHHHHcCCCEEE
Confidence 223211 000000 0001333333 357888888765 234455555555
Q ss_pred EEecccCcCccchhhHHHh---hhccCCCCceEEEEeeee-eeCCccccccCCCcccHhHHHHh-cChhhHHHHHh
Q 009329 240 HGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLI 310 (537)
Q Consensus 240 h~~G~Dl~f~H~~~~~a~~---~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll 310 (537)
-|.| |+.+.+.|. .+++.. .+++ .|..++ ..+|.||||+.| .++++++++. |.|.++.-|++
T Consensus 213 --rG~d----~~~~t~~q~~l~~alG~~-~p~~-~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~ 279 (476)
T PRK01406 213 --RGED----HLSNTPKQILLYEALGWE-VPVF-AHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLA 279 (476)
T ss_pred --ECch----hhcCHHHHHHHHHHhCCC-CCeE-EEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHH
Confidence 7779 666655543 555533 3444 777775 458999999999 6899999885 45655555444
No 81
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.69 E-value=1.3e-15 Score=161.50 Aligned_cols=244 Identities=17% Similarity=0.132 Sum_probs=156.7
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|+++....++|. +.-.|+-.|+|.|. ......+.+.+.++|++||+.++
T Consensus 10 APSPTG~lHiG~artAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~R~~~~~~~~i~~~L~WLGl~wD 71 (513)
T PRK14895 10 APSPTGFLHIGSARTALFNYLFARH-----HNGKFLLRIEDTDK-------------ERSTKEAVEAIFSGLKWLGLDWN 71 (513)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEECCCCc-------------cccChHHHHHHHHHHHHcCCCCC
Confidence 5889999999999999988888883 45678888888864 22344589999999999999964
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCCC----CCcchhchhhhcCCCccc
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYG----RLSGQRLENNRAGERVAV 187 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~yG----~ls~~~l~~~~~g~~~~~ 187 (537)
....++|++.+.+.++.++|+++|.|| .|||... .|.|. .++.. ....|...-+
T Consensus 72 e~py~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~---~~~~~~~~~i 143 (513)
T PRK14895 72 GEVIFQSKRNNLYKEAALKLLQNGKAY-----YCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPS---IYPTDIKPVI 143 (513)
T ss_pred CCceeEeCcHHHHHHHHHHHHHcCCeE-----EecCcHHHHHHHHHhhhccCCCCCCChhhcccChh---hhhcCCCeeE
Confidence 455688999999999999999999999 7887652 11221 11111 0001111000
Q ss_pred cccccCCc-cceecccccCCCCcccc--------CCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHh
Q 009329 188 DSRKRNPA-DFALWKAAKAGEPSWDS--------PWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258 (537)
Q Consensus 188 ~~~k~~~~-df~lwk~~~~g~~~w~~--------~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~ 258 (537)
. .| .|. .-..|...-.|+++++. -...|.|.+|..++.. ....|.+..| -|.| |..+.+.|.
T Consensus 144 R-~k-~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVD-D~~m~ithVI--RG~d----~~~~t~~q~ 214 (513)
T PRK14895 144 R-LK-TPREGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVD-DHDMGITHII--RGDD----HLTNAARQL 214 (513)
T ss_pred E-EE-cCCCCceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHHH-HHhcCCCEEE--ECch----HhhhHHHHH
Confidence 0 00 000 00112111112222111 1235778999885533 2234544444 7789 776766554
Q ss_pred ---hhccCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHH-hcChhhHHHHHhhc--CCCCCcccCHHHHHH
Q 009329 259 ---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA--HYRSPLNYSVLQLDS 327 (537)
Q Consensus 259 ---~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~--~~~~~~~fs~~~l~~ 327 (537)
.+++ ...+.+ .|..+|+ .+|+|||||.|. +.+.++.+ +|.|++++-|++.- ++...-.||.+.+.+
T Consensus 215 ~l~~aLG-~~~p~~-~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 215 AIYQAFG-YAVPSM-THIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred HHHHHcC-CCCCeE-EEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 4454 334444 8889988 699999999998 47777776 69999999998853 233333577777654
No 82
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.68 E-value=6.3e-16 Score=164.00 Aligned_cols=252 Identities=16% Similarity=0.174 Sum_probs=167.5
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||||++++...++|. +.-.++.-++|.|. ......|.+.+.++|++||+. +
T Consensus 17 APsPtG~LHiGharaAlln~l~Ar~-----~gG~~iLRiEDTDp-------------~R~~~e~~~~I~~dL~WLGl~-w 77 (523)
T PLN03233 17 PPEPSGYLHIGHAKAALLNDYYARR-----YKGRLILRFDDTNP-------------SKEKAEFEESIIEDLGKIEIK-P 77 (523)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCC-------------CccchHHHHHHHHHHHHhCCC-C
Confidence 5999999999999999999999885 45678888998875 223345999999999999998 4
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCC------C----CCCCCcchh----chhhhcCCC-------
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------P----NYGRLSGQR----LENNRAGER------- 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~------~----~yG~ls~~~----l~~~~~g~~------- 184 (537)
|....+|++.+.+.++..+|+++|.|| ++||.... + .|-.++..+ .+++..|..
T Consensus 78 D~~~~qSdr~~~y~~~a~~Li~~G~AY-----~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~l 152 (523)
T PLN03233 78 DSVSFTSDYFEPIRCYAIILIEEGLAY-----MDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCL 152 (523)
T ss_pred CCCccccccHHHHHHHHHHHHHcCCeE-----ecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEE
Confidence 677789999999999999999999999 67775521 0 122233221 122333311
Q ss_pred ---ccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHH---Hh
Q 009329 185 ---VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA---QS 258 (537)
Q Consensus 185 ---~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a---~~ 258 (537)
++......+-.||++++....-.+.....| .+.|.++.+|+.. ....|. +--+-|.| |..+.+. ..
T Consensus 153 R~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~-~~~PtY~fA~~VD-D~l~gI--THviRg~E----~~~~t~~q~~l~ 224 (523)
T PLN03233 153 RAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAY-KAYPTYDLACPIV-DSIEGV--THALRTTE----YDDRDAQFFWIQ 224 (523)
T ss_pred EEeCcccCCCCCCcCCEEEEEcCCcccccCCcc-cceeccCCceeee-ccccCC--CeEEechh----hhcCCHHHHHHH
Confidence 111111112268888876432122222334 5678888876421 222333 33334557 4444333 34
Q ss_pred hhccCCCCceEEEEeeeeeeCCccccccC------CCcc---------cHhHHHH-hcChhhHHHHHhhc-CCCCCcccC
Q 009329 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSL------GNFF---------TIRQITE-RYHPLALRHFLISA-HYRSPLNYS 321 (537)
Q Consensus 259 ~a~~~~~~~~~~~h~g~v~~~G~KMSKS~------Gn~i---------~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs 321 (537)
.+++..+ +.+ .|-+.+.+.|.|||||+ .+.| |+..+.. +|.|++||-|++.. .-..+..++
T Consensus 225 ~aLg~~~-P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~ 302 (523)
T PLN03233 225 KALGLRR-PRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLD 302 (523)
T ss_pred HHhCCCC-Cee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceec
Confidence 5555443 445 55677778999999997 2334 5777765 69999999999986 556788999
Q ss_pred HHHHHHHHHH
Q 009329 322 VLQLDSASDA 331 (537)
Q Consensus 322 ~~~l~~~~~~ 331 (537)
++.|.+..+.
T Consensus 303 ~~~l~~~nR~ 312 (523)
T PLN03233 303 WAKFWAENKK 312 (523)
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 83
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.65 E-value=2.6e-15 Score=144.51 Aligned_cols=174 Identities=22% Similarity=0.223 Sum_probs=127.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. +.-.++.-|+|.|. ......|.+.+.++|++||+.++
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar~-----~~G~~iLRieDtD~-------------~R~~~~~~~~I~~dL~wlGl~wd 68 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFARK-----YGGKFILRIEDTDP-------------ERSRPEYVESILEDLKWLGLDWD 68 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEeCcCCC-------------CCCChHHHHHHHHHHHHcCCCCC
Confidence 5899999999999999988888885 56788889999885 12233588999999999999854
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccC
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKA 205 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~ 205 (537)
....++|++.+.+.+.+++|+++|
T Consensus 69 ~~~~~QS~r~~~y~~~~~~L~~~g-------------------------------------------------------- 92 (230)
T cd00418 69 EGPYRQSDRFDLYRAYAEELIKKG-------------------------------------------------------- 92 (230)
T ss_pred CCeeehhcCHHHHHHHHHHHHHcC--------------------------------------------------------
Confidence 436788999999999999999999
Q ss_pred CCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHh---hhccCCCCceEEEEeeeeee-CCc
Q 009329 206 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNE 281 (537)
Q Consensus 206 g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~ 281 (537)
|.|.+|++|+.. ....| ++..+-|.| |..+.+.|. .+++. +.+.| .|...++. +|+
T Consensus 93 -----------g~p~Y~la~vvD-D~~~g--IThViRG~D----~l~st~~q~~l~~~Lg~-~~P~~-~H~pll~~~~g~ 152 (230)
T cd00418 93 -----------GYPLYNFVHPVD-DALMG--ITHVLRGED----HLDNTPIQDWLYEALGW-EPPRF-YHFPRLLLEDGT 152 (230)
T ss_pred -----------CCcccccccccc-ccccC--CCEEEECHh----hhhchHHHHHHHHHcCC-CCCeE-EEeeeeeCCCCC
Confidence 122333322111 11122 344455668 555544443 45544 44556 88888876 679
Q ss_pred cccccCCCcccHhHHHH-hcChhhHHHHHhhcCC
Q 009329 282 KMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY 314 (537)
Q Consensus 282 KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~ 314 (537)
|||||.|+ ++++++.+ ++.|++++-|+.....
T Consensus 153 KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~ 185 (230)
T cd00418 153 KLSKRKLN-TTLRALRRRGYLPEALRNYLALIGW 185 (230)
T ss_pred CccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCC
Confidence 99999999 68888766 5999999999876433
No 84
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.65 E-value=3.5e-15 Score=158.86 Aligned_cols=255 Identities=17% Similarity=0.103 Sum_probs=165.9
Q ss_pred eCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC
Q 009329 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (537)
Q Consensus 45 ~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~ 124 (537)
..|+|+|++||||||++++...++|. +.-.++.-++|.|. ......|.+.+.++|++||+.+
T Consensus 34 FaPsPtG~LHiG~ar~al~n~~~Ar~-----~~G~~iLRieDTd~-------------~r~~~e~~~~I~~dL~wLGi~~ 95 (554)
T PRK05347 34 FPPEPNGYLHIGHAKSICLNFGLAQD-----YGGKCNLRFDDTNP-------------EKEDQEYVDSIKEDVRWLGFDW 95 (554)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCC-------------CcCChHHHHHHHHHHHHcCCCC
Confidence 46999999999999999999999985 45678888898874 2233468999999999999996
Q ss_pred CCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCC--------------CCCCCCcchh-c---hhhhcCCCc-
Q 009329 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNYGRLSGQR-L---ENNRAGERV- 185 (537)
Q Consensus 125 ~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~--------------~~yG~ls~~~-l---~~~~~g~~~- 185 (537)
++....+|++.+.+.++..+|+++|.|| ++||.... ..|-.++..+ + ++|..|...
T Consensus 96 d~~~~~qS~r~~~~y~~a~~Li~~G~AY-----~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~ 170 (554)
T PRK05347 96 SGELRYASDYFDQLYEYAVELIKKGKAY-----VDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPE 170 (554)
T ss_pred CCCceeeecCHHHHHHHHHHHHHcCCEe-----eCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCC
Confidence 5666788999999999999999999999 77776420 0122233221 1 224445321
Q ss_pred -------cccccccCC--ccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHH
Q 009329 186 -------AVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (537)
Q Consensus 186 -------~~~~~k~~~--~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a 256 (537)
..+-...|+ +|+++.+......+.=-..| ...|.++.+|+.. ....|.+..| -|.| |..+.+.
T Consensus 171 g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~-~iyPtYdfA~~vd-D~l~gITHvl--Rg~E----~~~~t~~ 242 (554)
T PRK05347 171 GSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKW-CIYPMYDFAHCIS-DAIEGITHSL--CTLE----FEDHRPL 242 (554)
T ss_pred CcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCce-eeecCcCccceee-ccccCCceEE--eccc----cccChHH
Confidence 111111233 58887775321111000011 1378888776421 2223322222 2335 5555444
Q ss_pred H---hhhccCCCCceEEEEeeeeeeCCccccccCCC-------c--------ccHhHHHH-hcChhhHHHHHhhc-CCCC
Q 009329 257 Q---SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN-------F--------FTIRQITE-RYHPLALRHFLISA-HYRS 316 (537)
Q Consensus 257 ~---~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn-------~--------i~~~dll~-~~~~d~lR~~ll~~-~~~~ 316 (537)
| ..+++....+.. .+.+++.++|.|||||++. + .|+..+.+ +|.|++||-|++.. .-..
T Consensus 243 ~~~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~ 321 (554)
T PRK05347 243 YDWVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQ 321 (554)
T ss_pred HHHHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 4 456654322333 3457788899999999964 2 26777776 69999999999986 4456
Q ss_pred CcccCHHHHHHHHHH
Q 009329 317 PLNYSVLQLDSASDA 331 (537)
Q Consensus 317 ~~~fs~~~l~~~~~~ 331 (537)
+..++++.|.+..+.
T Consensus 322 ~~~i~~~~L~~~nRk 336 (554)
T PRK05347 322 DSVIDMSMLESCIRE 336 (554)
T ss_pred CCeecHHHHHHHHHH
Confidence 789999999877653
No 85
>PLN02627 glutamyl-tRNA synthetase
Probab=99.64 E-value=3.3e-15 Score=158.70 Aligned_cols=237 Identities=19% Similarity=0.203 Sum_probs=156.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. +.-.|+..|+|.|. ......+.+.+.++|++|||.++
T Consensus 51 APSPTG~LHiG~aRtAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~R~~~e~~~~I~~~L~WLGl~wD 112 (535)
T PLN02627 51 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDL-------------ARSTKESEEAVLRDLKWLGLDWD 112 (535)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHcCCCCC
Confidence 4899999999999999888888883 55788888998874 22344588999999999999853
Q ss_pred CC--------ccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCC----CCCcchhchh-
Q 009329 126 TY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNY----GRLSGQRLEN- 178 (537)
Q Consensus 126 ~~--------~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~y----G~ls~~~l~~- 178 (537)
.. -.++|++.+.+.+++++|+++|.|| .|||... .+.| -.++..+..+
T Consensus 113 egp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~ 187 (535)
T PLN02627 113 EGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVY-----PCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAE 187 (535)
T ss_pred cCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCee-----eccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHH
Confidence 22 1468899999999999999999999 7887652 1122 2233322211
Q ss_pred hhcCCCc--cccccc------------------cCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCee
Q 009329 179 NRAGERV--AVDSRK------------------RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 238 (537)
Q Consensus 179 ~~~g~~~--~~~~~k------------------~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~d 238 (537)
+..|... .+.... ..-.||+++| ..|.|.+|++|+.. ....| ++
T Consensus 188 ~~~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R-------------~DG~PtY~fA~vVD-D~~mg--IT 251 (535)
T PLN02627 188 LAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLR-------------SNGQPVYNFCVAVD-DATMG--IT 251 (535)
T ss_pred HhCCCCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEe-------------cCCCccccccceec-ccccC--Cc
Confidence 1122211 000000 0012333333 35788999887532 22233 33
Q ss_pred EEEecccCcCccchhhHHHh---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHH-hcChhhHHHHHhhcC
Q 009329 239 IHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAH 313 (537)
Q Consensus 239 ih~~G~Dl~f~H~~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~ 313 (537)
-.+-|.| |..|.+.|. .|++..+ +.| .|...++. +|+||||+.|. +++.++.+ +|.|++++-|++.-.
T Consensus 252 HViRG~D----~l~nTpkQi~ly~aLg~~~-P~f-~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LG 324 (535)
T PLN02627 252 HVIRAEE----HLPNTLRQALIYKALGFPM-PRF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLG 324 (535)
T ss_pred EEEechh----hhcChHHHHHHHHHcCCCC-CeE-EEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 3334558 777777665 5554444 444 88888876 78999999987 58888776 699999999987654
Q ss_pred CC---CCcccCHHHHHHH
Q 009329 314 YR---SPLNYSVLQLDSA 328 (537)
Q Consensus 314 ~~---~~~~fs~~~l~~~ 328 (537)
+. ..--|+.+.+.+.
T Consensus 325 ws~~~~~e~~~~~eli~~ 342 (535)
T PLN02627 325 WNDGTENEIFTLEELVEK 342 (535)
T ss_pred CCCCCCCCcCCHHHHHHh
Confidence 33 2345777776543
No 86
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.61 E-value=5.8e-15 Score=147.51 Aligned_cols=216 Identities=18% Similarity=0.106 Sum_probs=140.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. +.-.++.-|+|.|. ......|.+.+.++|++|||.++
T Consensus 11 APSPTG~LHlG~~rtAL~n~l~Ar~-----~~G~~iLRiEDtD~-------------~R~~~~~~~~I~~dL~wlGl~wD 72 (299)
T PRK05710 11 APSPSGPLHFGSLVAALGSWLDARA-----HGGRWLLRIEDIDP-------------PREVPGAADAILADLEWLGLHWD 72 (299)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEECcCCC-------------CccchHHHHHHHHHHHHCCCCCC
Confidence 6899999999999999888887774 45688889999875 12234588999999999999964
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCC------------CCC-C---CCcchhchhhhcCCCcccc-
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------PNY-G---RLSGQRLENNRAGERVAVD- 188 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~------------~~y-G---~ls~~~l~~~~~g~~~~~~- 188 (537)
....++|++.+.+.+++++|+++|.+| .+||.... +.| | .++..+.... --++..+
T Consensus 73 e~~~~QS~r~~~Y~~~~~~L~~~G~aY-----~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~--~iRlk~~~ 145 (299)
T PRK05710 73 GPVLYQSQRHDAYRAALDRLRAQGLVY-----PCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPP--AWRLRVPD 145 (299)
T ss_pred CCceEeeccHHHHHHHHHHHHHCCCce-----ecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCc--eEEEEcCC
Confidence 445678999999999999999999999 66665420 111 1 1211000000 0000000
Q ss_pred --------------c-cccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchh
Q 009329 189 --------------S-RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 253 (537)
Q Consensus 189 --------------~-~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~ 253 (537)
. ....-.||++++. .|.|.+|++|+.. ....|.+. .+-|.| |..+
T Consensus 146 ~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~-------------dg~ptY~lA~vVD-D~~~gITh--VvRG~D----~l~~ 205 (299)
T PRK05710 146 AVIAFDDRLQGRQHQDLALAVGDFVLRRA-------------DGLFAYQLAVVVD-DALQGVTH--VVRGAD----LLDS 205 (299)
T ss_pred CceEEEEecceeEeeCCCCCCCCEEEEec-------------CCCccccchhHHh-cccCCCCE--EEeChh----hhhc
Confidence 0 0001135555543 4778999887543 23344433 344569 6555
Q ss_pred hHHHh---hhccCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009329 254 EIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 254 ~~a~~---~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
.+.|. .+++.. ++.| .|.+.++ .+|+|||||.|. ..+.+ ..+.|+ +..++...
T Consensus 206 t~~Q~~l~~aLg~~-~P~y-~H~pll~~~~g~kLSKr~~~-~~i~~--~g~~p~-l~~~l~~l 262 (299)
T PRK05710 206 TPRQIYLQQLLGLP-TPRY-LHLPLVLNADGQKLSKQNGA-PALDA--AGPLPV-LAAALRFL 262 (299)
T ss_pred CHHHHHHHHHcCCC-CCeE-EEeecccCCCCCcccccCCc-cchhh--cCcCHH-HHHHHHHc
Confidence 55554 455444 4545 8888775 499999999887 46666 788888 66665553
No 87
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.61 E-value=1.7e-14 Score=159.95 Aligned_cols=252 Identities=18% Similarity=0.073 Sum_probs=167.9
Q ss_pred eCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC
Q 009329 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (537)
Q Consensus 45 ~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~ 124 (537)
-.|+|+|++||||+|++++...++|. |.-.++.-++|.|. ......|.+.+.++|++||+.+
T Consensus 36 FaPsPtG~lHiGhar~alln~~~A~~-----~~G~~~LR~eDTd~-------------~r~~~e~~~~I~~dl~wLG~~w 97 (771)
T PRK14703 36 FPPEPNGYLHIGHAKSILLNFGIARD-----YGGRCHLRMDDTNP-------------ETEDTEYVEAIKDDVRWLGFDW 97 (771)
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCCCCC-------------CcCChHHHHHHHHHHHHcCCCC
Confidence 36999999999999999999998885 45688888998874 2233459999999999999986
Q ss_pred CCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCCCCCcchh-c---hhhhcCCC--
Q 009329 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQR-L---ENNRAGER-- 184 (537)
Q Consensus 125 ~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~yG~ls~~~-l---~~~~~g~~-- 184 (537)
+.....+|+|.+.+.++..+|+++|.|| ++||... -+.|-.++..+ + +.|..|..
T Consensus 98 d~~~~~qS~~~~~y~~~a~~Li~~G~aY-----~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~ 172 (771)
T PRK14703 98 GEHLYYASDYFERMYAYAEQLIKMGLAY-----VDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPD 172 (771)
T ss_pred CCCceEeecCHHHHHHHHHHHHHcCCcc-----cCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcC
Confidence 5555788999999999999999999999 7777642 01122233322 1 13444431
Q ss_pred ---c-c--ccccccC--CccceecccccCCCCccccCCCC---CCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchh
Q 009329 185 ---V-A--VDSRKRN--PADFALWKAAKAGEPSWDSPWGP---GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 253 (537)
Q Consensus 185 ---~-~--~~~~k~~--~~df~lwk~~~~g~~~w~~~wG~---g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~ 253 (537)
+ . .+-...| -+|+++++......+ ..|. +.|.+|.+|... ....|. +--.-|.| |..+
T Consensus 173 g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~----~~Gd~~~i~PtYdfa~~vd-D~l~gI--THvlRg~E----~~~~ 241 (771)
T PRK14703 173 GAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHY----RTGDEWCIYPMYDFAHPLE-DAIEGV--THSICTLE----FENN 241 (771)
T ss_pred CCeEEEEEeeccCCcccCCCCEEEEEcCCCCC----CcCCCCCcCCCccccceee-ccccCC--cEEEecHh----hhhc
Confidence 1 1 1111122 268888886422222 1343 378888876421 222332 23333557 4444
Q ss_pred hHHH---hhhccCCCC-ceEEEEeeeeeeCCccccccC-------CCcc--------cHhHHHH-hcChhhHHHHHhhc-
Q 009329 254 EIAQ---SCAACQDSN-VSYWMHNGHVTNNNEKMSKSL-------GNFF--------TIRQITE-RYHPLALRHFLISA- 312 (537)
Q Consensus 254 ~~a~---~~a~~~~~~-~~~~~h~g~v~~~G~KMSKS~-------Gn~i--------~~~dll~-~~~~d~lR~~ll~~- 312 (537)
.+.| ..++++.++ +.+ .+.+++.+.|.|||||+ |-+- |+..+.+ +|.|++||-|++..
T Consensus 242 ~~~~~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG 320 (771)
T PRK14703 242 RAIYDWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIG 320 (771)
T ss_pred cHHHHHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhC
Confidence 4433 456655433 444 45688999999999998 4431 5666665 69999999999986
Q ss_pred CCCCCcccCHHHHHHHHHH
Q 009329 313 HYRSPLNYSVLQLDSASDA 331 (537)
Q Consensus 313 ~~~~~~~fs~~~l~~~~~~ 331 (537)
.-..+..++++.|....+.
T Consensus 321 ~s~~~~~i~~~~L~~~~R~ 339 (771)
T PRK14703 321 VAKTNSTVDIGVLEFAIRD 339 (771)
T ss_pred CCccCceecHHHHHHHHHH
Confidence 4457789999999877653
No 88
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.61 E-value=1.7e-14 Score=154.76 Aligned_cols=256 Identities=16% Similarity=0.104 Sum_probs=161.5
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|+|||||||++++...++|. +.-.++.-++|.|. ......|.+.+.++|++||+.++
T Consensus 58 APsPtGyLHIGharaAllN~l~Ar~-----~gG~~iLRiEDTDp-------------~R~~~e~~d~IleDL~WLGl~wD 119 (601)
T PTZ00402 58 PPEASGFLHIGHAKAALINSMLADK-----YKGKLVFRFDDTNP-------------SKEKEHFEQAILDDLATLGVSWD 119 (601)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEEcCCCC-------------cccCHHHHHHHHHHHHHCCCCCC
Confidence 6999999999999999999999985 34578888998874 22334599999999999999854
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC---------C-CCCCCCcchh-c---hhhhcCCC-----c-
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------S-PNYGRLSGQR-L---ENNRAGER-----V- 185 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~---------~-~~yG~ls~~~-l---~~~~~g~~-----~- 185 (537)
.....+|++.+.+.++.++|+++|+|| +++|... . +.|-.++..+ + ..+..|.. +
T Consensus 120 e~~~~QSdr~d~y~e~a~~Li~~G~AY-----~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~l 194 (601)
T PTZ00402 120 VGPTYSSDYMDLMYEKAEELIKKGLAY-----CDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCL 194 (601)
T ss_pred CceeeccccHHHHHHHHHHHHHcCCEE-----EecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEE
Confidence 335688999999999999999999999 6666532 1 1232232211 1 11222211 0
Q ss_pred ----cccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhc
Q 009329 186 ----AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA 261 (537)
Q Consensus 186 ----~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~ 261 (537)
+......+-+|+++++....-.+ ....--.+.|.++++|+.. ....| ++--+-|.|++- +.........++
T Consensus 195 R~kid~~~~n~~~rD~Vl~R~~~~~h~-rtGdk~dgyPtYdfA~vVD-D~l~g--ITHvlRg~E~l~-~tp~q~~L~~aL 269 (601)
T PTZ00402 195 RAKISVDNENKAMRDPVIYRVNLTPHA-RQGTKYKAYPTYDFCCPII-DSVEG--VTHALRTNEYHD-RNDQYYWFCDAL 269 (601)
T ss_pred EEecccCCCCCCccCCEEEEEcCCccc-ccCCCCceeeccCcceeeE-ccccC--CceEeechhhhh-CcHHHHHHHHHh
Confidence 11111112357877764321111 0011124678888876421 12233 233334557222 222233334555
Q ss_pred cCCCCceEEEEeeeeeeCCccccccCCCc---------------ccHhHHH-HhcChhhHHHHHhhc-CCCCCcccCHHH
Q 009329 262 CQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQIT-ERYHPLALRHFLISA-HYRSPLNYSVLQ 324 (537)
Q Consensus 262 ~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~dll-~~~~~d~lR~~ll~~-~~~~~~~fs~~~ 324 (537)
+..+ +.+ .|.+.++.+|.|||||++.- -|+.-|. ..|.++++|-|+... --.++..|+++.
T Consensus 270 g~~~-P~~-~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~ 347 (601)
T PTZ00402 270 GIRK-PIV-EDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSK 347 (601)
T ss_pred CCCC-ceE-EEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHH
Confidence 4443 444 77788888999999998852 1223332 369999999999887 556788999999
Q ss_pred HHHHHHH
Q 009329 325 LDSASDA 331 (537)
Q Consensus 325 l~~~~~~ 331 (537)
|....+.
T Consensus 348 L~~~nr~ 354 (601)
T PTZ00402 348 LWYFNTQ 354 (601)
T ss_pred HHHHHHH
Confidence 9877654
No 89
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.60 E-value=1e-14 Score=144.20 Aligned_cols=229 Identities=16% Similarity=0.049 Sum_probs=141.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. +.-.++.-|+|.|. ......+.+.+.++|++|||.++
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar~-----~gG~~iLRiEDtD~-------------~R~~~~~~~~I~~dL~wLGl~wD 67 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDARA-----HGGRWLVRIEDLDP-------------PREVPGAADDILRTLEAYGLHWD 67 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHcCCCCC
Confidence 5899999999999999999999884 45678888999885 12233588999999999999854
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC---------CCCCCC-CcchhchhhhcCCC--cccccc---
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SPNYGR-LSGQRLENNRAGER--VAVDSR--- 190 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~---------~~~yG~-ls~~~l~~~~~g~~--~~~~~~--- 190 (537)
....++|++++...+++++|+++|.|| ++||... .+.|.. ..+... ...|.. +.+...
T Consensus 68 e~~~~QS~r~~~Y~~~~~~L~~~G~aY-----~C~Ct~eel~~~~~~~~~~y~~~cr~~~~--~~~~~~~~~Rlk~~~~~ 140 (272)
T TIGR03838 68 GEVVYQSQRHALYQAALDRLLAAGLAY-----PCQCTRKEIAAAAGDGGGIYPGTCRNGLL--GRPARPAAWRLRVPDGV 140 (272)
T ss_pred CCeeeeeCCHHHHHHHHHHHHHcCCEE-----ecCCCHHHHHHHhcCCCCCCCchhhcccc--cccCCCceEEEecCCCC
Confidence 333489999999999999999999999 6776542 112211 000000 001110 000000
Q ss_pred ---------------ccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhH
Q 009329 191 ---------------KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (537)
Q Consensus 191 ---------------k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~ 255 (537)
-..-.||+++| ..|.|.+|++|+.. ....|. +-.+-|.| |..+.+
T Consensus 141 ~~~~D~~~g~~~~~~~~~~~D~vi~R-------------~Dg~ptY~fA~vVD-D~~~gI--ThViRG~D----~l~~t~ 200 (272)
T TIGR03838 141 IAFDDRLQGPQQQDLAAAVGDFVLRR-------------ADGLFAYQLAVVVD-DAAQGI--THVVRGAD----LLDSTP 200 (272)
T ss_pred ceEEEeeeeEEEecCcccCCCEEEEe-------------cCCCccccChhhhh-cccCCC--CEEEeCHh----hhhccH
Confidence 00012333333 35788999887543 333443 33444568 666665
Q ss_pred HHh---hhccCCCCceEEEEeeee-eeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc--CCC-CCcccCHHHH
Q 009329 256 AQS---CAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA--HYR-SPLNYSVLQL 325 (537)
Q Consensus 256 a~~---~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~--~~~-~~~~fs~~~l 325 (537)
.|. .+++..+ +.| .|.+.+ ..+|+|+|||.|- .+++++ -.+.++..++... .+. ..-.||.+.+
T Consensus 201 ~q~~l~~aLg~~~-P~y-~H~pll~~~~g~kLSKR~~~-~~i~~~---~~~~~~~~~l~~lG~~~~~~~~~~~~~~~ 271 (272)
T TIGR03838 201 RQIYLQRLLGLPP-PRY-LHLPLVVNADGEKLSKQNGA-PALDLS---HPLPALLAALRFLGLPPPPELAAASPAEL 271 (272)
T ss_pred HHHHHHHHhCCCC-CeE-EechhhhCCCCCeeeccCCc-cchhcC---CcHHHHHHHHHHcCCCCCcccccCCHHHh
Confidence 554 5555444 444 888887 4599999999887 355443 1234555555443 222 2335665544
No 90
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=6.7e-15 Score=155.37 Aligned_cols=247 Identities=22% Similarity=0.218 Sum_probs=150.5
Q ss_pred eCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC
Q 009329 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (537)
Q Consensus 45 ~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~ 124 (537)
..|+|+|++||||||++++-..++|. |.-.|+.-|+|.|. ..-...+.+.+.++|++||+.+
T Consensus 14 FAPsPtG~LHiG~artAl~N~~~Ar~-----~~G~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WLGl~w 75 (472)
T COG0008 14 FAPSPTGYLHIGHARTALLNYLYARK-----YGGKFILRIEDTDP-------------ERETPEAEDAILEDLEWLGLDW 75 (472)
T ss_pred ECcCCCCccchHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-------------CCCCHHHHHHHHHHHHhcCCCC
Confidence 46999999999999999888888885 55678888888874 2223358899999999999996
Q ss_pred CCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CC-CCCC----Ccchhchhhhc-CC-
Q 009329 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP-NYGR----LSGQRLENNRA-GE- 183 (537)
Q Consensus 125 ~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~-~yG~----ls~~~l~~~~~-g~- 183 (537)
+....++|++.+.+.+++++|+++|.|| ++||... -| .|.. |+.. +.+.. |.
T Consensus 76 de~~~~QS~r~~~Y~~~~~~Li~~G~AY-----~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~--~~~~~~~~~ 148 (472)
T COG0008 76 DEGPYYQSERFDIYYEYAEKLIEKGKAY-----VCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLF--EKMADLGEG 148 (472)
T ss_pred CCceeehhhhHHHHHHHHHHHHHCCCeE-----EecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchH--HHHhhcccC
Confidence 4436889999999999999999999999 8888762 01 2221 1110 11111 11
Q ss_pred -C--cccccc--ccCC--ccceecccccCCCCccc--cCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhh
Q 009329 184 -R--VAVDSR--KRNP--ADFALWKAAKAGEPSWD--SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE 254 (537)
Q Consensus 184 -~--~~~~~~--k~~~--~df~lwk~~~~g~~~w~--~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~ 254 (537)
. +.+.-. ..++ .|.+.-.-..... .++ ..--.|.|.++++|.. .....|.+..|. |.| |..|.
T Consensus 149 ~~~viR~k~~~~~~~~~~~D~v~g~i~~~~~-~~~dv~~r~dg~ptY~favvv-DD~~mgITHviR--G~d----~~~nt 220 (472)
T COG0008 149 GPAVVRLKIPMAHPGPVFRDLVRGRIVFAPK-HPDFVILRYDGYPTYNFAVVV-DDHLMGITHVLR--GED----HLDNT 220 (472)
T ss_pred CCeEEEEeCCCCCCCCccccceeeeEecCcc-CCcceeecCCCCcccceeeee-chhhcCCceEEe--chh----hccCC
Confidence 0 111000 0111 1221111000000 001 0111356777776532 233445444444 558 66676
Q ss_pred HHHh---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHH-HhcChhhHHHHHhhc--CC--CCCcccCHHHH
Q 009329 255 IAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQIT-ERYHPLALRHFLISA--HY--RSPLNYSVLQL 325 (537)
Q Consensus 255 ~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll-~~~~~d~lR~~ll~~--~~--~~~~~fs~~~l 325 (537)
+-|. .+++..+ +.| .|.+.++. +|+|||||+| .+.+.++. .+|.+.+++.++... .+ ...-.|+.+.+
T Consensus 221 ~~q~~l~~~lg~~~-P~~-~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~ 297 (472)
T COG0008 221 PRQIWLYEALGWPP-PVY-AHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEG 297 (472)
T ss_pred HHHHHHHHHcCCCC-CcE-EEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 6654 4544444 545 78899888 5679999999 67777644 568888888777542 22 33345555554
Q ss_pred HH
Q 009329 326 DS 327 (537)
Q Consensus 326 ~~ 327 (537)
..
T Consensus 298 ~~ 299 (472)
T COG0008 298 IK 299 (472)
T ss_pred Hh
Confidence 43
No 91
>PLN02907 glutamate-tRNA ligase
Probab=99.60 E-value=1.7e-14 Score=160.46 Aligned_cols=253 Identities=17% Similarity=0.144 Sum_probs=165.5
Q ss_pred eCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC
Q 009329 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (537)
Q Consensus 45 ~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~ 124 (537)
-.|+|+|++||||||++++...++|. |.-.++.-++|.|. ......|.+.+.++|++||+.+
T Consensus 218 FaPsPtG~LHiG~ar~al~n~~~Ar~-----~~G~~iLR~eDTdp-------------~r~~~e~~~~I~~dl~wLG~~~ 279 (722)
T PLN02907 218 FPPEPSGYLHIGHAKAALLNQYFARR-----YKGKLIVRFDDTNP-------------SKESDEFVENILKDIETLGIKY 279 (722)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-------------CcCChHHHHHHHHHHHHcCCCC
Confidence 36999999999999999999999984 45678888998875 2223459999999999999984
Q ss_pred CCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC---------CC-CCCCCcchh----chhhhcCCC------
Q 009329 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SP-NYGRLSGQR----LENNRAGER------ 184 (537)
Q Consensus 125 ~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~---------~~-~yG~ls~~~----l~~~~~g~~------ 184 (537)
|....+|++.+.+.++..+|+++|.||. ++|... .+ .|-.++..+ .++|..|..
T Consensus 280 -d~~~~qS~r~~~y~~~a~~Li~~G~aY~-----~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~ 353 (722)
T PLN02907 280 -DAVTYTSDYFPQLMEMAEKLIKEGKAYV-----DDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCC 353 (722)
T ss_pred -CCcccccccHHHHHHHHHHHHHcCCeee-----cCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeE
Confidence 6677899999999999999999999994 333321 00 122233221 123433331
Q ss_pred --ccccccccC--CccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHH---
Q 009329 185 --VAVDSRKRN--PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ--- 257 (537)
Q Consensus 185 --~~~~~~k~~--~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~--- 257 (537)
..++-...| -+|+++.+....-.+..-..| .+.|.++.+|... ....|. +--.-|.| |..+.+.|
T Consensus 354 lR~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~-~~~PtY~fa~~vd-D~~~gI--ThvlRg~e----~~~~t~~q~~l 425 (722)
T PLN02907 354 VRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY-KVYPTYDFACPFV-DALEGV--THALRSSE----YHDRNAQYYRI 425 (722)
T ss_pred EEEEcccCCCCCCcccCEEEEecCCcccccCCcc-ceeeccCCceEEE-cccCCC--ceEeecHh----hhhChHHHHHH
Confidence 111111112 258887776422222223344 5678888876421 122332 23333457 55444444
Q ss_pred hhhccCCCCceEEEEeeeeeeCCccccccC-------CCc--------ccHhHHHH-hcChhhHHHHHhhc-CCCCCccc
Q 009329 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSL-------GNF--------FTIRQITE-RYHPLALRHFLISA-HYRSPLNY 320 (537)
Q Consensus 258 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~-------Gn~--------i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~f 320 (537)
..+++... +.+ .|.++++++|.|||||+ |-+ -|++.+.. +|.|++||-|+... .-..+..|
T Consensus 426 ~~~lg~~~-p~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~ 503 (722)
T PLN02907 426 LEDMGLRK-VHI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLM 503 (722)
T ss_pred HHHcCCCC-Cee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccc
Confidence 35554443 344 45678899999999998 432 25666654 59999999999987 55678899
Q ss_pred CHHHHHHHHHH
Q 009329 321 SVLQLDSASDA 331 (537)
Q Consensus 321 s~~~l~~~~~~ 331 (537)
+++.|....+.
T Consensus 504 ~~~~l~~~nr~ 514 (722)
T PLN02907 504 EWDKLWTINKK 514 (722)
T ss_pred cHHHHHHHHHH
Confidence 99999877553
No 92
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.60 E-value=2.3e-14 Score=138.00 Aligned_cols=203 Identities=16% Similarity=0.123 Sum_probs=143.9
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|++++...++|. +.-.++.-|+|.|. ......+.+.+.++|++||+.+
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar~-----~~G~~iLRieDtD~-------------~R~~~~~~~~I~~dL~wlGl~w- 67 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAKK-----YGGRCNLRFDDTNP-------------EKEEEEYVDSIKEDVKWLGIKP- 67 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-------------cccchHHHHHHHHHHHHcCCCC-
Confidence 5899999999999999999888885 45678888999874 2233458899999999999985
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccC
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKA 205 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~ 205 (537)
|...++|++.+.+.+.+++|+++|.+|.. +. .| .++.+
T Consensus 68 D~~~~QS~r~~~Y~~~~~~L~~~g~aY~~-----------~~-------------~~------------~~~~i------ 105 (238)
T cd00807 68 YKVTYASDYFDQLYEYAEQLIKKGKAYVH-----------HR-------------TG------------DKWCI------ 105 (238)
T ss_pred CCceecccCHHHHHHHHHHHHHcCCeecC-----------CC-------------CC------------CCEEE------
Confidence 56668899999999999999999999960 00 01 02221
Q ss_pred CCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHh---hhccCCCCceEEEEeeeeeeCCcc
Q 009329 206 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEK 282 (537)
Q Consensus 206 g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~---~a~~~~~~~~~~~h~g~v~~~G~K 282 (537)
+|.++++|+.. ....| ++-.+-|.| |..+.+.|. .+++..+ +.+ +|.+++..+|.|
T Consensus 106 ------------~ptY~lA~vVD-D~~~g--IThVvRG~D----~l~~t~~Q~~l~~aLg~~~-P~~-~~~~hln~~g~k 164 (238)
T cd00807 106 ------------YPTYDFAHPIV-DSIEG--ITHSLCTLE----FEDRRPSYYWLCDALRLYR-PHQ-WEFSRLNLTYTV 164 (238)
T ss_pred ------------EeccccceEee-ccccC--CCeEEechh----hhcCCHHHHHHHHHcCCCC-Cce-eEEEEECCCCCC
Confidence 36666665321 12233 344445668 555555554 5555444 444 345677889999
Q ss_pred ccccCCCc---------------ccHhHHHH-hcChhhHHHHHhhc-CCCCCcccCHHHHHHHHH
Q 009329 283 MSKSLGNF---------------FTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD 330 (537)
Q Consensus 283 MSKS~Gn~---------------i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~ 330 (537)
|||+.+.. .++..+.. ++.|++++-|++.. --.++..|+++.|....+
T Consensus 165 LSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr 229 (238)
T cd00807 165 MSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVR 229 (238)
T ss_pred ccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 99998521 23444443 68999999999886 556889999999876554
No 93
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.58 E-value=4.3e-14 Score=143.74 Aligned_cols=222 Identities=20% Similarity=0.233 Sum_probs=133.6
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|++++...++|- +.-.++.-|+|.|. ......+.+.+.++|++|||.++
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar~-----~~G~~iLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~D 68 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFARK-----YGGKFILRIEDTDP-------------ERCRPEFYDAILEDLRWLGLEWD 68 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHHH-----TTSEEEEEEETSST-------------TTCHHHHHHHHHHHHHHHT---S
T ss_pred CCCCCCCcccchhHHHHHHHHHHhc-----cCceEEEecccccc-------------ccchhhHHHHHHhheeEEEEecC
Confidence 5899999999999999999999884 45678888898874 12234588999999999999964
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC-------------CC---CCC----CCcchhchh-hhcCCC
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SP---NYG----RLSGQRLEN-NRAGER 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~-------------~~---~yG----~ls~~~l~~-~~~g~~ 184 (537)
.....+|++.+.+.+++++|+++|.+| .|||.+. |+ .|. .+...++.. ...|..
T Consensus 69 ~~~~~QS~r~~~Y~~~~~~L~~~g~aY-----~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~ 143 (314)
T PF00749_consen 69 YGPYYQSDRLEIYQEAAEKLIDKGKAY-----PCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGP 143 (314)
T ss_dssp TCEEEGGGGHHHHHHHHHHHHHTTSEE-----EEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTS
T ss_pred CeEEeHHHHHHHHHHHHHHHhhcCCCc-----cccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCc
Confidence 466788999999999999999999999 8888662 11 121 122111111 111211
Q ss_pred --ccc--ccc----------------ccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecc
Q 009329 185 --VAV--DSR----------------KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (537)
Q Consensus 185 --~~~--~~~----------------k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~ 244 (537)
+.+ +.. .....||+++|. .|.|.+|++|+.- ....|. +-.+-|.
T Consensus 144 ~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~vi~r~-------------dg~ptY~fA~vVD-D~~~gI--THViRG~ 207 (314)
T PF00749_consen 144 AVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDFVIRRS-------------DGYPTYHFAVVVD-DHLMGI--THVIRGE 207 (314)
T ss_dssp EEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTEEEEST-------------TSEB-HHHHHHHH-HHHTT---SEEEEEG
T ss_pred eeeeeecccccccccccCcceeeeeccccCCchhcccc-------------ccCcccccceeec-cccccc--CeEEEcc
Confidence 000 000 001124444443 5788999977543 333454 4444566
Q ss_pred cCcCccchhhHHH---hhhccCCCCceEEEEeeeeee-CCccccccCCCcc-cHhHHHH-hcChhhHHHHHhhc
Q 009329 245 DLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFF-TIRQITE-RYHPLALRHFLISA 312 (537)
Q Consensus 245 Dl~f~H~~~~~a~---~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i-~~~dll~-~~~~d~lR~~ll~~ 312 (537)
| |..+.+.| ..+++..+ +.| .|...++. +|+|+|||.+... .+..+.+ .+.++++--++...
T Consensus 208 D----~l~~t~~Q~~L~~~Lg~~~-P~~-~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 208 D----LLSSTPRQILLYEALGWPP-PPY-AHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp G----GTTCHHHHHHHHHHCTSSS--EE-EEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred c----cccccHHHHHHHHHhCCCC-cce-EeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHh
Confidence 9 55454444 45555444 445 67655444 8999999999843 3556554 46777766666543
No 94
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.57 E-value=7.1e-14 Score=148.75 Aligned_cols=255 Identities=18% Similarity=0.174 Sum_probs=165.5
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009329 37 PGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
.|+|. .=-.|+|+|++||||||++++...++|. +.-.++.-++|.|. ......|.+.+.++
T Consensus 49 ~gkv~-tRFaPsPtG~LHiGharaalln~~~Ar~-----~gG~~iLRiEDTDp-------------~r~~~e~~~~I~~d 109 (574)
T PTZ00437 49 GGKPY-FRFPPEPNGFLHIGHAKSMNLNFGSARA-----HGGKCYLRYDDTNP-------------ETEEQVYIDAIMEM 109 (574)
T ss_pred CCcEE-EEeCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCc-------------cccChHHHHHHHHH
Confidence 45554 3346999999999999999999999985 45678888888874 23445699999999
Q ss_pred HHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCC----------CCCCCCcchh-c---hhhhcC
Q 009329 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----------PNYGRLSGQR-L---ENNRAG 182 (537)
Q Consensus 117 l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~----------~~yG~ls~~~-l---~~~~~g 182 (537)
|++||+.+ |..+.+|+|.+.+.++..+|+++|.|| ++||.... ..|-.++..+ + ++|..|
T Consensus 110 L~wLGi~~-D~~~~qS~y~~~~ye~A~~Li~~G~AY-----~C~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g 183 (574)
T PTZ00437 110 VKWMGWKP-DWVTFSSDYFDQLHEFAVQLIKDGKAY-----VDHSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQG 183 (574)
T ss_pred HHHcCCCC-CCCCcCchhHHHHHHHHHHHHHcCCEE-----EcCCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhc
Confidence 99999984 666788999999899999999999999 78876530 0111222211 1 223333
Q ss_pred -----CCc---cccccccCC--ccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCc---
Q 009329 183 -----ERV---AVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP--- 249 (537)
Q Consensus 183 -----~~~---~~~~~k~~~--~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~--- 249 (537)
+.+ ..+....|+ +|+++.+-....++.=-..| .+.|.++.+| ++|=|..|+.|+.-
T Consensus 184 ~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~----------~vdD~l~gITHvlct~E 252 (574)
T PTZ00437 184 RYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH----------CLIDSLEDIDYSLCTLE 252 (574)
T ss_pred ccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------eeechhcCCCEEeeech
Confidence 211 111111122 46666543322121111234 4678888776 45555666664331
Q ss_pred ---cchh--hHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCc---------------ccHhHHHH-hcChhhHHHH
Q 009329 250 ---HHEN--EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHF 308 (537)
Q Consensus 250 ---H~~~--~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~dll~-~~~~d~lR~~ 308 (537)
+.+- |+ ...++...|. . .+.+-++++|.|||||+... .|+..+.. +|.|++||-|
T Consensus 253 f~~r~~~y~wl--~~~l~l~~p~-~-~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f 328 (574)
T PTZ00437 253 FETRRESYFWL--LEELNLWRPH-V-WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRF 328 (574)
T ss_pred hhcccHHHHHH--HHHhCCcccc-e-EeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHH
Confidence 1111 22 2333333322 3 34577888999999999874 46766665 6999999999
Q ss_pred Hhhc-CCCCCcccCHHHHHHHHHH
Q 009329 309 LISA-HYRSPLNYSVLQLDSASDA 331 (537)
Q Consensus 309 ll~~-~~~~~~~fs~~~l~~~~~~ 331 (537)
++.. --..+..++++.|.+..+.
T Consensus 329 ~~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 329 CELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred HHHhCCCccceEeeHHHHHHHHHH
Confidence 9987 4457789999999877653
No 95
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.57 E-value=5.4e-14 Score=149.57 Aligned_cols=253 Identities=17% Similarity=0.134 Sum_probs=156.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||||++++...++|. +.-.++.-++|.|. ......|.+.+.++|++||+.++
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~~-----~~G~~iLRieDTd~-------------~r~~~e~~~~I~~dL~wLG~~~d 67 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAKY-----YNGTCNLRFDDTNP-------------VKEDPEYVESIKRDVEWLGFKWE 67 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEEcCCCc-------------ccCChHHHHHHHHHHHHcCCCCC
Confidence 6899999999999999999999884 45678888998875 22234599999999999999965
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC----------CCC----CCCCcchh-c---hhhhcCCC---
Q 009329 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPN----YGRLSGQR-L---ENNRAGER--- 184 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~----------~~~----yG~ls~~~-l---~~~~~g~~--- 184 (537)
+....+|++.+.+.++.++|+++|.|| ++||... .+. |-.++..+ + ++|..|..
T Consensus 68 ~~~~~qS~~~~~~~~~a~~Li~~G~AY-----~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g 142 (522)
T TIGR00440 68 GKIRYSSDYFDELYRYAEELIKKGLAY-----VDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEG 142 (522)
T ss_pred CCceEccccHHHHHHHHHHHHHcCCEE-----eecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCC
Confidence 666678999999999999999999999 7777642 111 22233222 1 23444431
Q ss_pred --c---cccccccCC--ccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhH--
Q 009329 185 --V---AVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI-- 255 (537)
Q Consensus 185 --~---~~~~~k~~~--~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~-- 255 (537)
+ ..+....++ +|+++.+......+-=-..| ...|.++.+|+.. ....|.+.. .-|.| |..|..
T Consensus 143 ~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~-~iyPtYdfa~~vd-D~l~gITHv--iRg~E----~~~nt~~Y 214 (522)
T TIGR00440 143 KAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKW-CIYPMYDFTHCIS-DAMENITHS--LCTLE----FQDNRRLY 214 (522)
T ss_pred CeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCCCe-eEEeCcCCceeeh-hccCCCceE--eecHh----hhhcHHHH
Confidence 0 111111122 46655543321111000111 1277887776421 222332222 23446 444432
Q ss_pred -HHhhhccCCCCceEEEEeeeeeeCCccccccCCCc---------------ccHhHHHH-hcChhhHHHHHhhcCCCC-C
Q 009329 256 -AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLISAHYRS-P 317 (537)
Q Consensus 256 -a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~dll~-~~~~d~lR~~ll~~~~~~-~ 317 (537)
+....++....+.. .+.++++++|.|||||++.. .|+..+.+ +|.|++||-|++...+.+ +
T Consensus 215 ~~~~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~ 293 (522)
T TIGR00440 215 DWVLDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQD 293 (522)
T ss_pred HHHHHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCC
Confidence 11222222212333 34567888999999999874 37888776 699999999999875543 3
Q ss_pred cccCHHHHHHHHH
Q 009329 318 LNYSVLQLDSASD 330 (537)
Q Consensus 318 ~~fs~~~l~~~~~ 330 (537)
...++..+.+..+
T Consensus 294 ~~~e~~~l~~~~r 306 (522)
T TIGR00440 294 NNIEVVRLESCIR 306 (522)
T ss_pred CceehhhHHHHHH
Confidence 3456666665544
No 96
>PLN02859 glutamine-tRNA ligase
Probab=99.56 E-value=4.2e-14 Score=155.23 Aligned_cols=271 Identities=16% Similarity=0.115 Sum_probs=165.5
Q ss_pred eeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCC
Q 009329 21 IYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGE 100 (537)
Q Consensus 21 l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~ 100 (537)
.+||...-++.+.- ..|+|..=. .|.|+|++||||||++++...++|. +.-.++..++|.|.
T Consensus 247 ~~~~~~~~~~hl~~-t~g~V~tRF-aPsPtG~LHiGharaallN~~~Ar~-----~~G~~~LRieDTdp----------- 308 (788)
T PLN02859 247 PSNTKEILEKHLKA-TGGKVYTRF-PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGCCYLRFDDTNP----------- 308 (788)
T ss_pred ccCcHHHHHHHHhh-cCCceEEEe-CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-----------
Confidence 33444333344433 345554333 5999999999999999999998886 45678888888874
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC-----------CCCCC
Q 009329 101 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------SPNYG 169 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~-----------~~~yG 169 (537)
..-...|.+.+.+++++||+. ++...++|+|.+.+.++..+|+++|.|| ++||... ||.+.
T Consensus 309 --~r~~~e~~~~I~edL~WLG~~-~d~~~~qSd~f~~~Y~~A~~Li~~G~AY-----~C~ct~eei~~~R~~~~~sp~Rd 380 (788)
T PLN02859 309 --EAEKKEYIDHIEEIVEWMGWE-PFKITYTSDYFQELYELAVELIRRGHAY-----VDHQTPEEIKEYREKKMNSPWRD 380 (788)
T ss_pred --CccchHHHHHHHHHHHHcCCC-CCCcccccHhHHHHHHHHHHHHHcCCeE-----eccCCHHHHHHHHhhhccCCCCC
Confidence 233456999999999999998 4666788999987778899999999999 7777652 33222
Q ss_pred CCcc-hh---chhhhcC-----CCc---cccccccC--CccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCC
Q 009329 170 RLSG-QR---LENNRAG-----ERV---AVDSRKRN--PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 235 (537)
Q Consensus 170 ~ls~-~~---l~~~~~g-----~~~---~~~~~k~~--~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~ 235 (537)
. +. .. .++|..| ..+ ..+....+ -+|+++.+-.....+---..|= ..|.++.+|... ....|.
T Consensus 381 ~-s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~-iyPtYdFA~~vd-D~legI 457 (788)
T PLN02859 381 R-PIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC-IYPSYDYAHCIV-DSLENI 457 (788)
T ss_pred C-ChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeE-EEeccccccccc-ccccCC
Confidence 1 11 11 1223222 211 01100011 1455554432111110001222 267887766321 222332
Q ss_pred CeeEEEecccCcCccchhhHH---HhhhccCCCCceEEEEeeeeeeCCccccccCCCc---------------ccHhHHH
Q 009329 236 KFDIHGGGIDLIFPHHENEIA---QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQIT 297 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a---~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~dll 297 (537)
+.. .-|.| |..+.+. ...+++..+ +.+ .|.+.++++|.|||||++.. .|+..+.
T Consensus 458 THv--LRg~E----~~~~~~~y~wl~~aLg~~~-P~~-~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glR 529 (788)
T PLN02859 458 THS--LCTLE----FETRRASYYWLLDSLGLYQ-PYV-WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLR 529 (788)
T ss_pred ceE--eechh----hhcCCHHHHHHHHHcCCCC-CcE-EeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHH
Confidence 222 23446 4444333 345655444 334 67788888999999999764 4677766
Q ss_pred H-hcChhhHHHHHhhcCCC-CCc-ccCHHHHHHH
Q 009329 298 E-RYHPLALRHFLISAHYR-SPL-NYSVLQLDSA 328 (537)
Q Consensus 298 ~-~~~~d~lR~~ll~~~~~-~~~-~fs~~~l~~~ 328 (537)
+ +|.|++||-|++...+. .+. .|+++.|..+
T Consensus 530 rrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~ 563 (788)
T PLN02859 530 RRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHH 563 (788)
T ss_pred HCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhh
Confidence 5 69999999999986443 344 6999999544
No 97
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.55 E-value=1e-13 Score=134.46 Aligned_cols=185 Identities=18% Similarity=0.202 Sum_probs=131.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|+++.....+|- +...++..|+|.|. ......+.+.+.+++++|||.+
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~-----~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dL~wlGl~~- 67 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK-----HGGKFILRIEDTDQ-------------ERSVPEAEEAILEALKWLGLDW- 67 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEECcCCC-------------CCCchHHHHHHHHHHHHcCCCC-
Confidence 5899999999999999988888885 34578888888763 2223358899999999999985
Q ss_pred CC---------ccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCcc
Q 009329 126 TY---------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196 (537)
Q Consensus 126 ~~---------~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~d 196 (537)
|. ...+|++.+.+.+++++|+++|
T Consensus 68 d~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g----------------------------------------------- 100 (239)
T cd00808 68 DEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG----------------------------------------------- 100 (239)
T ss_pred CcCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC-----------------------------------------------
Confidence 54 5578899999999999999988
Q ss_pred ceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHH---HhhhccCCCCceEEEEe
Q 009329 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA---QSCAACQDSNVSYWMHN 273 (537)
Q Consensus 197 f~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a---~~~a~~~~~~~~~~~h~ 273 (537)
.|.|++++.+++. ....| ++..+-|.| |+.+.+- ...+++.+ .+.| .|.
T Consensus 101 -------------------dg~ptY~~a~~vD-D~~~~--ithViRG~D----~~~~t~~q~~l~~aLg~~-~p~~-~h~ 152 (239)
T cd00808 101 -------------------DGFPTYHLANVVD-DHLMG--ITHVIRGEE----HLSSTPKQILLYEALGWE-PPKF-AHL 152 (239)
T ss_pred -------------------CCCcccccHHHHh-HHhcC--CCEEEEChh----hhhChHHHHHHHHHcCCC-CCce-Eee
Confidence 1345566555432 12233 344466779 6655443 34555444 3445 566
Q ss_pred eee-eeCCccccccCCCcccHhHHHH-hcChhhHHHHHhhcCCCC---CcccCHHHH
Q 009329 274 GHV-TNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRS---PLNYSVLQL 325 (537)
Q Consensus 274 g~v-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~---~~~fs~~~l 325 (537)
..+ ..+|.|||||.|+ .+++.+.+ .+.|++++.|++...... +.-++.+.+
T Consensus 153 pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l 208 (239)
T cd00808 153 PLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEEL 208 (239)
T ss_pred ccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHH
Confidence 665 5589999999999 68888765 699999999988643322 234555544
No 98
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.8e-12 Score=127.20 Aligned_cols=244 Identities=21% Similarity=0.258 Sum_probs=152.7
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009329 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|.+|||-+|+++.-.+++| -+.-.|+-.|.|-|.+= ++..-.+.+.++|.++||.+
T Consensus 39 APSPTGfLHlGgLRTALfNYLfAr-----k~gGkFiLRiEDTDq~R-------------~v~gs~e~i~~~L~w~nl~~- 99 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFAR-----KKGGKFILRIEDTDQKR-------------LIRGSEEAIYEDLKWANLDW- 99 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHH-----hcCCeEEEEeccccccc-------------cccchHHHHHHHHHhcCCCc-
Confidence 488889999999999965555554 56677888888887521 22224477899999999984
Q ss_pred CCcc---------chhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCC----CCCcchhchh
Q 009329 126 TYQP---------RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNY----GRLSGQRLEN 178 (537)
Q Consensus 126 ~~~~---------r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~y----G~ls~~~l~~ 178 (537)
|.-| +.|+......++.++|++.|.|| .+||... -|.| -.+|..+++.
T Consensus 100 DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AY-----rCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~ 174 (524)
T KOG1149|consen 100 DEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAY-----RCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ 174 (524)
T ss_pred ccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCee-----EeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH
Confidence 5555 44677788999999999999999 8898762 2333 3566666554
Q ss_pred hh-cCCCccc--cccccCC--ccce----ecccc-cCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcC
Q 009329 179 NR-AGERVAV--DSRKRNP--ADFA----LWKAA-KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 248 (537)
Q Consensus 179 ~~-~g~~~~~--~~~k~~~--~df~----lwk~~-~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f 248 (537)
.. .|.+..+ .-.+.+| .|.+ -|... ..|+|. .--..|.|.||.+| .+|=|.+|+-|+.
T Consensus 175 ~lakg~pf~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~V--vmKSDgfPTYHfAn----------VVDDh~M~IsHVi 242 (524)
T KOG1149|consen 175 KLAKGTPFTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPV--VMKSDGFPTYHFAN----------VVDDHLMGISHVI 242 (524)
T ss_pred HHhcCCCeeEEEecCCCCCChhhhhhhhhhccccccCCCcE--EEecCCCcceeeee----------eecchhcchhhee
Confidence 32 3433211 1111111 0111 11111 011110 00135889999887 4566666665433
Q ss_pred c---cchhhH---HHhhhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHH-hcChhhHHHHHhhc---CCCCC
Q 009329 249 P---HHENEI---AQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA---HYRSP 317 (537)
Q Consensus 249 ~---H~~~~~---a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~---~~~~~ 317 (537)
- |..+.+ ..-.|+ +.+|+++ .|-..++. +|.|.||+.|. +.+..+.+ +|=|+++=-|++.. .....
T Consensus 243 RGeEWlpST~KH~lLYkAf-gW~pPkF-aHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~ 319 (524)
T KOG1149|consen 243 RGEEWLPSTLKHILLYKAF-GWQPPKF-AHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTEN 319 (524)
T ss_pred ecchhccccHHHHHHHHHh-CCCCCce-eeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCccccc
Confidence 2 222222 223444 4445555 77766554 99999999998 57777776 58899988888764 33455
Q ss_pred cccCHHHHHHH
Q 009329 318 LNYSVLQLDSA 328 (537)
Q Consensus 318 ~~fs~~~l~~~ 328 (537)
--||.+.|.+.
T Consensus 320 ~f~sl~eLieq 330 (524)
T KOG1149|consen 320 EFFSLEELIEQ 330 (524)
T ss_pred ccccHHHHHHH
Confidence 67888888754
No 99
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.2e-12 Score=137.08 Aligned_cols=166 Identities=22% Similarity=0.168 Sum_probs=124.1
Q ss_pred CCeeEEEecccCcCccchhhHHHhhhccC-CCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-
Q 009329 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (537)
Q Consensus 235 ~~~dih~~G~Dl~f~H~~~~~a~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~- 312 (537)
.|+|+.++|+||+..|..+.+.-+.|+.. +.|++-.-.|||++++++|||||.||+.|+++.+++||+|+.|+.|+..
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAG 741 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeeccc
Confidence 38999999999999999888877777764 5688777899999999999999999999999999999999999999987
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHH
Q 009329 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (537)
Q Consensus 313 ~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~ 392 (537)
.--.|-||.......+.=.+......+..++........+....-.|+-+...++.++..-.+++ ++.++..|+..-+|
T Consensus 742 D~veDANF~ea~AnAaILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~Gfy 820 (1080)
T KOG0437|consen 742 DGVEDANFVEANANAAILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAY-EDTLFKDALKYGFY 820 (1080)
T ss_pred CCcccchhHHhcccHHHHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhhhH
Confidence 77788999877766555444333333333222111111111111245677788888888888888 78889999988678
Q ss_pred HHHHHHHHH
Q 009329 393 DALKFINSS 401 (537)
Q Consensus 393 ~l~~~~N~~ 401 (537)
++..+=..|
T Consensus 821 d~qaArD~Y 829 (1080)
T KOG0437|consen 821 DLQAARDMY 829 (1080)
T ss_pred HHHHHHHHH
Confidence 876544443
No 100
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.13 E-value=7e-10 Score=101.79 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=110.9
Q ss_pred hcChhhHHHHHhhcCCCCCcccCHHHHHHHHH-HHHHHHHHHHHHHHhcCcccc-CC---C------CCCCChHHHHHHH
Q 009329 299 RYHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALSPFQE-HG---K------TARINPAAEDCIN 367 (537)
Q Consensus 299 ~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~-~l~~l~~~~~~~~~~l~~~~~-~~---~------~~~~~~~l~~~l~ 367 (537)
..|.+++||++|+....++++|+++.+.+... +..+++++++|+.+++++... .. . .++.+..|...+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 46789999999999999999999999776653 566999999999999877542 11 0 1223466777888
Q ss_pred HHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCch-hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009329 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 368 ~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
.+++.+..++ .+.++..++.. +.+|+..+|.|++++.+.... +....|+.++.++..++.+++.+|||.++
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATY-LFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHH-HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888888887 67775555555 999999999999988776432 33567899999999999999999999864
No 101
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=98.54 E-value=2.8e-07 Score=70.86 Aligned_cols=57 Identities=33% Similarity=0.514 Sum_probs=42.2
Q ss_pred HHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009329 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 372 ~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
+|.+||+||||||.|++. |+++++.+|+...... ...+..+...++.+..+|||...
T Consensus 1 ~F~~AmdDDfNT~~Ala~-lf~l~~~~N~~~~~~~-----------~~~~~~~~~~l~~~~~vLGl~~~ 57 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAA-LFELVKEINRALESND-----------KEDLEALAAALRKLLDVLGLLQE 57 (63)
T ss_dssp HHHHHHCBTS-HHHHHHH-HHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHCCT-S-S
T ss_pred ChHHHHhHhcCcHHHHHH-HHHHHHHHHHhcccCC-----------HHHHHHHHHHHHHHHhcCcCCCC
Confidence 488999999999999999 9999999999222211 22345567888899999999764
No 102
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=98.43 E-value=7.6e-07 Score=77.57 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCccccCCC----------CCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhh
Q 009329 335 IYQTLQDCEVALSPFQEHGK----------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNM 404 (537)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~----------~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~ 404 (537)
++|+++|+++++++....+. .++.+..|...+..++..+..++ .+++ |+.+..||++|+..+|+||+.
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~-~~~~-p~~l~~yL~~La~~f~~fy~~ 78 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAA-KDLE-PHKLCDYLYELAQAFNSFYDN 78 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHH-HHT--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999987643221 12234667788888999999998 6665 666777799999999999999
Q ss_pred hcccCch-hhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 009329 405 LKKKQPK-QQQ-LSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 405 ~~~~~~~-~~~-~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
++++... ... ..|+.++.++..++..++.+|||.|.
T Consensus 79 ~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi~~~ 116 (119)
T PF05746_consen 79 VRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLGIEPL 116 (119)
T ss_dssp S-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT----
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 9887653 223 67899999999999999999999764
No 103
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=98.38 E-value=5.5e-06 Score=73.92 Aligned_cols=125 Identities=12% Similarity=0.146 Sum_probs=87.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-C---CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHH
Q 009329 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-H---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 395 (537)
Q Consensus 320 fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~-~---~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~ 395 (537)
||++.+....+.+.++++.+..+......... . +.....+.++...+..+...+.++| +.+++..|+.. +++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATA-LYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHH
Confidence 68888988888898988887765332121111 0 1112345778889999999999999 89999999999 99999
Q ss_pred H--HHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHH
Q 009329 396 K--FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVL 447 (537)
Q Consensus 396 ~--~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~ 447 (537)
. ..|+|++..+||............+..+...++.+..+|- |+|. .++++|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~-~ae~l~ 132 (135)
T cd07962 79 WNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPF-ITEELW 132 (135)
T ss_pred HHHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccH-HHHHHH
Confidence 7 7999999999996422212222344566677777777774 7775 444444
No 104
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.5e-06 Score=88.91 Aligned_cols=98 Identities=24% Similarity=0.318 Sum_probs=78.3
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009329 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
|+|..=. +|-|+|++|||||+.+++---++ .-|+-..++..||-. |..=.++|++.+++|+
T Consensus 199 GkVv~RF-PPEpSGyLHIGHAKAALLNqYfa-----~~~~G~LIvRFDDTN-------------PaKE~~eFe~~IleDl 259 (712)
T KOG1147|consen 199 GKVVTRF-PPEPSGYLHIGHAKAALLNQYFA-----QAYQGKLIVRFDDTN-------------PAKENEEFEDVILEDL 259 (712)
T ss_pred CceEEec-CCCCCceeehhhHHHHHHHHHHH-----HhcCceEEEEecCCC-------------cchhhHHHHHHHHHHH
Confidence 4544433 58899999999999987544333 235567778888753 4444567999999999
Q ss_pred HHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeee
Q 009329 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 155 (537)
Q Consensus 118 ~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~ 155 (537)
..|||. +|.+..+|+|.+.|..++.+|+..|.||..+
T Consensus 260 ~~LgIk-pd~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 260 SLLGIK-PDRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHhCcC-cceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 999998 7999999999999999999999999999764
No 105
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.21 E-value=1.8e-05 Score=68.20 Aligned_cols=113 Identities=8% Similarity=0.128 Sum_probs=80.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHH
Q 009329 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 399 (537)
Q Consensus 320 fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N 399 (537)
|+++.+....|.+.++++.+.............+...+.++++...+.++.+++.++| ++++++.|+.. +++++..+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n 78 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAA-LMELVNALY 78 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHH-HHHHHHHHH
Confidence 5778888888888888887655332111000001123457889999999999999999 89999999999 999999999
Q ss_pred HHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHH
Q 009329 400 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVL 447 (537)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~ 447 (537)
+|++...|+ ...+...++.++.+|. |+|. .++++|
T Consensus 79 ~~~~~~~p~------------~~~~~~~l~~~~~lL~P~~P~-~aeei~ 114 (117)
T cd07958 79 KYKKKDAQH------------AAVLREALETLVLLLAPFAPH-IAEELW 114 (117)
T ss_pred Hhhccccch------------HHHHHHHHHHHHHHHcccchH-HHHHHH
Confidence 998765431 3445667777777774 7776 455444
No 106
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=98.10 E-value=2.9e-05 Score=68.23 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhh--hHHHHHHHHHHHHHHHHHHh
Q 009329 356 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ--QLSLIESLRKIENEVKEVLR 433 (537)
Q Consensus 356 ~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~l~ 433 (537)
.+.+.++...+.++..++.++| ++++++.|+.. +++|+..+|+|++..+||...+. .......+..+...++.++.
T Consensus 35 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-~~~~~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~ 112 (129)
T cd07957 35 TEEDEELLEEAEELLEEVAEAM-EELEFRKALEE-IMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAI 112 (129)
T ss_pred CcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999 89999999999 99999999999999999965322 12223344566677777787
Q ss_pred hcc-cCCCCChHHHHH
Q 009329 434 ILG-LLPPGAYSEVLQ 448 (537)
Q Consensus 434 vLG-i~~~~~~~~~~~ 448 (537)
+|. |+|. .++++|+
T Consensus 113 lL~P~~P~-~aeei~~ 127 (129)
T cd07957 113 LLSPFMPE-TAEKILD 127 (129)
T ss_pred HhcCCCCh-HHHHHHH
Confidence 874 7776 5555543
No 107
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=98.07 E-value=7.9e-06 Score=61.08 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=41.6
Q ss_pred HHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhccc
Q 009329 373 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437 (537)
Q Consensus 373 v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi 437 (537)
|.++|+||||||.|++. ++++++.+|.++.... . ...+..+...+..++.+||+
T Consensus 2 f~~al~DD~NT~~Al~~-l~~l~~~~N~~l~~~~----~------~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 2 FEEAMDDDFNTPEALAV-LFELAREINRLLLKAV----D------AEELAALAALLRALGGVLGL 55 (56)
T ss_pred hHHHhhcccCcHHHHHH-HHHHHHHHHHHhhccc----C------HHHHHHHHHHHHHHHhccCC
Confidence 78899999999999999 9999999999874321 0 01134455677778889987
No 108
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=98.04 E-value=7.7e-05 Score=69.99 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=94.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHH
Q 009329 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 393 (537)
Q Consensus 320 fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~ 393 (537)
|+.+.+.+..+.+.+++++++.+...+...... ......|++++..+..+...+.++| +++++..|+.. +++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~-i~~ 78 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQA-LNN 78 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHH
Confidence 567888888888889999887665444332111 1113357889999999999999999 89999999999 999
Q ss_pred HHH--HHHHHHhhhcccCch--hhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 394 ALK--FINSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 394 l~~--~~N~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
|+. ..|.|++..++|... +.++.+......+..+++.++.+|. |+|. .++++|+.++
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~-~aeel~~~l~ 140 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPF-TAEEVWEHLP 140 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhh-hHHHHHHhcc
Confidence 996 569999999988541 1122222233455667888888885 8887 7888888775
No 109
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.04 E-value=9e-05 Score=63.99 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=80.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHH-HHHHHHH
Q 009329 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF-QDALKFI 398 (537)
Q Consensus 320 fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L-~~l~~~~ 398 (537)
|+.+.+....|.+.+++........... +.......|+++...+.++..++.++| +++++..|++. + +++...+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~-~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETEG---ELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKE-GLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccC---CccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH-HHHHHHHHH
Confidence 5677777777777777766554222111 101123467899999999999999999 89999999999 7 9999999
Q ss_pred HHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHH
Q 009329 399 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQ 448 (537)
Q Consensus 399 N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~ 448 (537)
|.|++..++|. ....+...++.++.+|. |+|. .++++|+
T Consensus 76 ~~Y~~~~~~~~----------~~~~~~~~l~~~~~lL~P~~P~-~aeeiw~ 115 (117)
T cd07959 76 DWYRERGGAGM----------NKDLLRRFIEVWTRLLAPFAPH-LAEEIWH 115 (117)
T ss_pred HHHHHHhCccc----------hHHHHHHHHHHHHHHHcCcchH-hHHHHHh
Confidence 99998777651 12345667777788885 7776 5666554
No 110
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=98.02 E-value=2e-05 Score=83.19 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=46.4
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|+.+ |++.-+-...-++...+ +-++...++ .+|.|||||.||.|++.| +..+|..++=++++.
T Consensus 186 ~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 186 DVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 6789999999654 43332222222233322 223444443 389999999999999988 566788887777764
No 111
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=97.81 E-value=0.00011 Score=64.26 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCcccc-C-C------C-----CCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHH
Q 009329 335 IYQTLQDCEVALSPFQE-H-G------K-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (537)
Q Consensus 335 l~~~~~~~~~~l~~~~~-~-~------~-----~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~ 401 (537)
++|+++|+.+++++... . . . .++.+..+...+..+++.+..++ .+.+ |+.+..|+++|+..+|.|
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~-~~~~-~~~l~~~l~~L~~~~~~f 78 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAA-ETLE-PHRLANYLYDLASAFHSF 78 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HHCC-cHHHHHHHHHHHHHHHHH
Confidence 35777788777665431 0 0 0 12334667777888888888887 5665 555555599999999999
Q ss_pred HhhhcccCch--hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009329 402 LNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 402 ~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
|+.+.+.... +....|+.++.++...+..++.+|||.|.
T Consensus 79 y~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llgi~~~ 119 (122)
T smart00836 79 YNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLGISAP 119 (122)
T ss_pred HccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 9998877543 23567999999999999999999999764
No 112
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.78 E-value=5.4e-05 Score=75.70 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=45.1
Q ss_pred EEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEEc-Ccchh-hHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009329 43 YVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVR-NFTDV-DDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 43 y~~gPt~yg-~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~-~idd~-d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
..||--|+| .+||||.-+ ...+.++.+ .|++|.++. +.+-+ +++.-+...+.+.+++++ .++...+...+.+
T Consensus 3 iy~G~~PTg~~lHLG~~~~---~~~~~~lq~-~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i-~~~~~~~~~~~~a 77 (269)
T cd00805 3 VYIGFDPTAPSLHLGHLVP---LMKLRDFQQ-AGHEVIVLIGDATAMIGDPSGKSEERKLLDLELI-RENAKYYKKQLKA 77 (269)
T ss_pred EEEeeCCCCCcccHHHHHH---HHHHHHHHH-CCCeEEEEECCCeeecCCCCCccccccCCCHHHH-HHHHHHHHHHHHH
Confidence 457888889 999999554 335556555 599887554 22221 222111122234555544 4566778888888
Q ss_pred cCCC
Q 009329 120 LQCL 123 (537)
Q Consensus 120 l~i~ 123 (537)
+|..
T Consensus 78 ~g~~ 81 (269)
T cd00805 78 ILDF 81 (269)
T ss_pred HHcc
Confidence 8874
No 113
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=97.76 E-value=9.5e-05 Score=59.77 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHH-HH
Q 009329 323 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NS 400 (537)
Q Consensus 323 ~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~-N~ 400 (537)
+.|.++.+.+.+|+.++.++. . . .+..+.++|.++|+||||+|.|++. |+++++.+ |+
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~----~--------~-------~~~~~~~~F~~AL~DDLNTp~Ala~-L~~l~k~i~~~ 60 (81)
T cd07955 2 EVLADAEARLARWRSAVALPD----G--------P-------DAEALVARLREALADDLDTPKALAA-LDAWAREALSR 60 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhcc----c--------c-------cHHHHHHHHHHHHHhhCChHHHHHH-HHHHHHHHHhc
Confidence 678889999999888776542 0 0 1234678999999999999999999 99999877 64
No 114
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.76 E-value=0.00014 Score=75.56 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=51.7
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009329 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
|+.-...+|--|+|.+||||.- ....++++. ..|++|.+. +.|... +..+ +.++++ ++++..++..++
T Consensus 64 ~~~~~iytG~~PSG~lHLGh~~---~~~~~~~lQ-~~g~~~~i~--IaD~ha-~~~~----~~~~e~-~~~~~~~~~~~~ 131 (368)
T PRK12285 64 GKPFAVYTGFMPSGPMHIGHKM---VFDELKWHQ-EFGANVYIP--IADDEA-YAAR----GLSWEE-TREWAYEYILDL 131 (368)
T ss_pred CCCeEEEEccCCCCCccHHHHH---HHHHHHHHH-hcCCCEEEE--ecchHH-HhcC----CCCHHH-HHHHHHHHHHHH
Confidence 4555667787888999999953 344444444 488887544 333221 1111 456554 445666688899
Q ss_pred HHcCCCCCC-CccchhhhH
Q 009329 118 ADLQCLPPT-YQPRVSDHM 135 (537)
Q Consensus 118 ~~l~i~~~~-~~~r~s~~~ 135 (537)
-++|+.+.. .+...|++.
T Consensus 132 lA~G~Dp~k~~i~~qS~~~ 150 (368)
T PRK12285 132 IALGFDPDKTEIYFQSENI 150 (368)
T ss_pred HHhCCCccceEEEECCchH
Confidence 999998431 234455544
No 115
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.76 E-value=4.7e-05 Score=76.23 Aligned_cols=74 Identities=19% Similarity=0.060 Sum_probs=42.1
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhcC
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 313 (537)
..++..+|.|... |++.-.-...-+...+.+.. +++.++.- +|.|||||.||.+++..+ .=+|+.++=++.+..
T Consensus 153 ~~~~vp~G~DQ~~-~i~l~rdla~r~n~~~~p~~-l~~p~l~~l~G~KMSKS~~~~i~l~~~--~dsp~~i~~ki~~a~ 227 (273)
T cd00395 153 GCDIQPGGSDQWG-NITLGRELARRFNGFTIAEG-LTIPLVTKLDGPKFGKSESGPKWLDTE--KTSPYEFYQFWINAV 227 (273)
T ss_pred CCcEEEecHHHHH-HHHHHHHHHHHhCCCCCCeE-EeeccccCCCCCcCCCCCCCCcccccc--CCCHHHHHHHHHccc
Confidence 4589999999643 44332222222222222323 34455544 899999999998875443 234555665555543
No 116
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=97.65 E-value=0.00083 Score=63.15 Aligned_cols=128 Identities=11% Similarity=0.141 Sum_probs=89.5
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHH--hcCcccc------CCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHH
Q 009329 320 YSVLQLDSASD-AVFYIYQTLQDCEV--ALSPFQE------HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 390 (537)
Q Consensus 320 fs~~~l~~~~~-~l~~l~~~~~~~~~--~l~~~~~------~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~ 390 (537)
||++.++...+ .+.+|++++..+.+ .+..... .......|++++..+.++...+.++| +++++..|+..
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~- 78 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRA- 78 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-
Confidence 78899998887 88899998866543 2221110 01124567999999999999999999 89999999999
Q ss_pred HHHHHHHH-HHHHhhhcc--cCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009329 391 FQDALKFI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 391 L~~l~~~~-N~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
+++|+... +.|++..+. +.... ...+......+..++..++.+|. |+|. .++++|+.+.
T Consensus 79 l~~f~~~~~~~Y~e~~K~~~~~~~~-~~~~~~~~~~l~~~l~~ll~ll~P~~P~-~aEElw~~l~ 141 (183)
T cd07961 79 LLEFIDELTNWYIRRNRKRFWGEEG-DDDKLAAYATLYEVLLTLSRLMAPFTPF-ITEEIYQNLR 141 (183)
T ss_pred HHHHHHHhhhhHhhhchHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHhh
Confidence 99999876 667765442 22111 11122334456677788888885 7887 7888888764
No 117
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.64 E-value=8.2e-05 Score=78.63 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=47.4
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..+|..||.|+.. |++.-.-...-++..+ + +-++...++ .+|+|||||.||.|++.| +..+|..++=++++.
T Consensus 188 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~-~-~~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 260 (408)
T PRK05912 188 GCDLQLGGSDQWG-NILSGRDLQRRYGGKP-Q-FGLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMNI 260 (408)
T ss_pred CCCEEeccHHHHH-HHHHHHHHHHHhCCCC-e-EEEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhcC
Confidence 6799999999764 5543222222222222 2 223444443 389999999999999987 567788888888764
No 118
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.63 E-value=0.00032 Score=73.29 Aligned_cols=91 Identities=9% Similarity=0.054 Sum_probs=51.8
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009329 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
++.-...+|--|+|.+|||| .++..--+.. |...|++|.++.. |+-.-+- ...|.++.++ +.....+...+
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~-lq~~G~~v~~~Ia--D~hA~~~---~~~g~~l~~i-~~~~~~~~~~~ 134 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQ--GILKAINVNK-LTKAGCVFVFWVA--DWFALLN---NKMGGDLEKI-RKVGEYFIEVW 134 (383)
T ss_pred CCCCEEEEEECCCCcccccc--hHhHhHHHHH-HHhCCCeEEEEEc--cceeecC---CCCCCCHHHH-HHHHHHHHHHH
Confidence 34445667888899999999 2222222333 4567999886642 1110000 0123445444 44666788889
Q ss_pred HHcCCCCC-CCccchhhhHHH
Q 009329 118 ADLQCLPP-TYQPRVSDHMEQ 137 (537)
Q Consensus 118 ~~l~i~~~-~~~~r~s~~~~~ 137 (537)
.++|+.+. ..+...|++++.
T Consensus 135 ~A~GlDp~k~~i~~qS~~v~~ 155 (383)
T PTZ00126 135 KAAGMDMDNVRFLWASEEINK 155 (383)
T ss_pred HHhCCCccceEEEECChhhhh
Confidence 99999742 234556665544
No 119
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.62 E-value=8.8e-05 Score=76.33 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=42.7
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
...+|-.|+|.+||||..+. --++++. ..|++|.+.. .|+-.-+-. ..++ +-..++...+..++.++|
T Consensus 32 ~v~~G~~PTG~lHLG~~~~~---~~~~~lq-~~g~~~~i~I--aD~ha~~~~-----~~~~-~~i~~~~~~~~~~~~A~G 99 (329)
T PRK08560 32 KAYIGFEPSGKIHLGHLLTM---NKLADLQ-KAGFKVTVLL--ADWHAYLND-----KGDL-EEIRKVAEYNKKVFEALG 99 (329)
T ss_pred EEEEccCCCCcchhhhhHHH---HHHHHHH-HCCCeEEEEE--ccchhhcCC-----CCCH-HHHHHHHHHHHHHHHHcC
Confidence 44588889999999995433 3344444 4698876542 222111100 0233 344456677888999999
Q ss_pred CCC
Q 009329 122 CLP 124 (537)
Q Consensus 122 i~~ 124 (537)
+.+
T Consensus 100 ~dp 102 (329)
T PRK08560 100 LDP 102 (329)
T ss_pred CCh
Confidence 974
No 120
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=97.60 E-value=0.00086 Score=57.33 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCc
Q 009329 357 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410 (537)
Q Consensus 357 ~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~ 410 (537)
+.+.++...+..+.+.+.++| +++.+..|+.. +++|+..+|+|++..+||..
T Consensus 39 ~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~-i~~~~~~~n~y~~~~~pw~~ 90 (117)
T cd07375 39 EADRELLARLQEFIKRTTNAL-EALDPTTAVQE-LFKFTNELNWYLDELKPALQ 90 (117)
T ss_pred HhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHhccHHHHHhhHHHc
Confidence 346889999999999999999 89999999999 99999999999998888865
No 121
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.57 E-value=0.00012 Score=74.36 Aligned_cols=87 Identities=17% Similarity=0.085 Sum_probs=46.9
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH--
Q 009329 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD-- 116 (537)
Q Consensus 39 ~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~-- 116 (537)
+.....||--|+|.+||||+.+.. ..+.|...|++|.++.+ |.-..+-.. .....+........+...
T Consensus 4 ~~~~~y~G~~PTg~lHlG~l~~~~----~~~~lq~~g~~~~i~ia--D~~a~~~~~----~~~~~~~~~~~~~~~~~~~~ 73 (292)
T PF00579_consen 4 KPFRVYTGIDPTGDLHLGHLVPIM----KLIWLQKAGFKVIILIA--DLHALLGDP----SKGDERKIRSRAEYNINDKA 73 (292)
T ss_dssp SSEEEEEEEESSSS-BHHHHHHHH----HHHHHHHTTSEEEEEEE--HHHHHHTTT----TGSSHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeECCCCcccchHHHHHH----HHHHHHhcCCccceEec--chhhcccCc----ccccHHHHHHHHHHHHHHHH
Confidence 345566778888999999987764 33444448999887653 221111000 011123333344555555
Q ss_pred HHHcCCCCCC-CccchhhhH
Q 009329 117 MADLQCLPPT-YQPRVSDHM 135 (537)
Q Consensus 117 l~~l~i~~~~-~~~r~s~~~ 135 (537)
+-++|+.+.. .+...|+..
T Consensus 74 ~la~g~d~~k~~i~~~s~~~ 93 (292)
T PF00579_consen 74 ILALGLDPEKTEIFRQSDWP 93 (292)
T ss_dssp HHHTTSHTTTEEEEEGHHHH
T ss_pred HHHhccCccceEEEeCCCcc
Confidence 7788886422 344555543
No 122
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.57 E-value=0.00058 Score=68.70 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=44.7
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC
Q 009329 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (537)
Q Consensus 43 y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i 122 (537)
..+|--|+|.+||||.-+++. ..+.|+..|+++.+. |.|.-.-+ . ...++ +-.+++..++..++.++|+
T Consensus 2 i~tG~~PTG~lHLG~~~~al~---~~~~lQ~ag~~~~~~--IaD~ha~t-~----~~~~~-~~~~~~~~~~~~~~lA~G~ 70 (280)
T cd00806 2 VLSGIQPSGSLHLGHYLGAFR---FWVWLQEAGYELFFF--IADLHALT-V----KQLDP-EELRQNTRENAKDYLACGL 70 (280)
T ss_pred EEEeeCCCchhhHHHHHHHHH---HHHHHHhCCCCEEEE--ecchHHHh-C----CCCCH-HHHHHHHHHHHHHHHHcCC
Confidence 457888889999999766332 334445569988765 33332111 0 11234 4455677888999999999
Q ss_pred CC
Q 009329 123 LP 124 (537)
Q Consensus 123 ~~ 124 (537)
.+
T Consensus 71 dp 72 (280)
T cd00806 71 DP 72 (280)
T ss_pred Cc
Confidence 74
No 123
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.49 E-value=0.0004 Score=71.40 Aligned_cols=86 Identities=19% Similarity=0.080 Sum_probs=48.9
Q ss_pred HHHhhcCCCeeEEEecccCcCccchhhHHHhhhcc---C---CCCceEEEEeeeee----eCCccccccCCC-cccHhHH
Q 009329 228 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---Q---DSNVSYWMHNGHVT----NNNEKMSKSLGN-FFTIRQI 296 (537)
Q Consensus 228 m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~---~---~~~~~~~~h~g~v~----~~G~KMSKS~Gn-~i~~~dl 296 (537)
|+..+|-...|+..+|.|+. +|++...-...-++ + ..|. . +|+.++- ++|+|||||.+| .|.+.|
T Consensus 131 qaaDil~~~~d~vpvG~DQ~-~h~elaRdia~r~n~~~~~~f~~P~-~-l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D- 206 (328)
T TIGR00233 131 QAADILLYQADLVPVGIDQD-QHLELTRDLAERFNKKFKNFFPKPE-S-LISKFFPRLMGLSGKKMSKSDPNSAIFLTD- 206 (328)
T ss_pred HHhhhhhcCCCeeecccccH-HHHHHHHHHHHHhhhhcCcccCCCh-h-hhccccCCCCCCCCCcCCCCCCCCeEeecC-
Confidence 44444444678999999974 46654333222222 1 2222 3 3434421 256899999997 888766
Q ss_pred HHhcChhhHHHHHhhc--CCCCCcccC
Q 009329 297 TERYHPLALRHFLISA--HYRSPLNYS 321 (537)
Q Consensus 297 l~~~~~d~lR~~ll~~--~~~~~~~fs 321 (537)
+++.++=-+.+. +....+.|+
T Consensus 207 ----~~e~I~~KI~~a~td~~~~~~~~ 229 (328)
T TIGR00233 207 ----TPKQIKKKIRKAATDGGRVTLFE 229 (328)
T ss_pred ----CHHHHHHHHHhcCCCCCCCcccC
Confidence 666666666553 443344443
No 124
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.41 E-value=0.00054 Score=70.38 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=45.6
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
+.++|--|+|.+||||.-.++-- ..+.+...|.++.+. |.|+-. +.. ..++.++ .++..+...++-++|
T Consensus 5 ~v~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~--IADlHa--lt~----~~~~~~l-~~~~~~~~~~~lA~G 73 (332)
T PRK12556 5 IMLTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF--IADYHA--LNA----VHDPEQF-RSYTREVAATWLSLG 73 (332)
T ss_pred EEEEEECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE--Eechhh--ccC----CCCHHHH-HHHHHHHHHHHhhee
Confidence 56788889999999995443211 122333456555543 223221 110 1255554 456667888888999
Q ss_pred CCCCC-Cccchhh
Q 009329 122 CLPPT-YQPRVSD 133 (537)
Q Consensus 122 i~~~~-~~~r~s~ 133 (537)
+.+.- .+...|+
T Consensus 74 lDP~k~~if~qS~ 86 (332)
T PRK12556 74 LDPEDVIFYRQSD 86 (332)
T ss_pred ecccceEEEECCC
Confidence 98431 3344444
No 125
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.36 E-value=0.0054 Score=63.17 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=43.8
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009329 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
.+.++|--|+|.+||||.-+++ .-.+.|...|. | ++.=.|.|. +.. ...++.++. ++..+...++-++
T Consensus 3 ~~v~sG~~PTG~~HLGn~l~~~---~~~~~lQ~~~~-~-~i~IaD~ha--~~~----~~~~~~~i~-~~~~~~~~~~lA~ 70 (333)
T PRK12282 3 PIILTGDRPTGKLHLGHYVGSL---KNRVALQNEHE-Q-FVLIADQQA--LTD----NAKNPEKIR-RNILEVALDYLAV 70 (333)
T ss_pred CEEEEeeCCCCcchHHHHHHHH---HHHHHHHhCCC-E-EEEEccchh--HhC----CCCCHHHHH-HHHHHHHHHHHHh
Confidence 3567788888999999955533 23335555664 4 333344442 221 124555444 4667788888899
Q ss_pred CCCC
Q 009329 121 QCLP 124 (537)
Q Consensus 121 ~i~~ 124 (537)
|+.+
T Consensus 71 G~dp 74 (333)
T PRK12282 71 GIDP 74 (333)
T ss_pred CcCh
Confidence 9974
No 126
>PLN02486 aminoacyl-tRNA ligase
Probab=97.32 E-value=0.0015 Score=68.19 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=49.3
Q ss_pred CCcceEEEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009329 37 PGKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg-~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
.|+.-...||=-|+| .+|||| +|.+..++.+.+..|..+... ++|- .+.+ ..+.++++ +.++..+..+
T Consensus 70 ~~~~~~vYtG~~PSg~~lHlGH---lv~~~~~~~lQ~~~~~~~~I~--iaD~-e~~~----~~~~~~e~-i~~~~~en~~ 138 (383)
T PLN02486 70 KGEKFYLYTGRGPSSEALHLGH---LIPFMFTKYLQDAFKVPLVIQ--LTDD-EKFL----WKNLSVEE-SQRLARENAK 138 (383)
T ss_pred cCCCeEEEeCCCCCCccccHHH---HHHHHHHHHHHHhCCCeEEEE--ecCH-HHHh----hcCCCHHH-HHHHHHHHHH
Confidence 355566778888998 599999 555555654444556655544 4443 2222 22466555 4567778889
Q ss_pred HHHHcCCCC
Q 009329 116 DMADLQCLP 124 (537)
Q Consensus 116 ~l~~l~i~~ 124 (537)
++.++|+.+
T Consensus 139 ~iiA~G~dp 147 (383)
T PLN02486 139 DIIACGFDV 147 (383)
T ss_pred HHHHhCCCC
Confidence 999999974
No 127
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0018 Score=65.39 Aligned_cols=74 Identities=14% Similarity=-0.013 Sum_probs=46.9
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCC-CceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLK-CEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G-~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
.....+|-.|+|.+||||.-.++ -.++....+ +++.|. =.|+|.- --.+.++++-.+.+..++..++-
T Consensus 5 ~~~vlSG~~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~~-IaDlha~------t~~~~~~~~~l~~~~~e~~a~~L 73 (314)
T COG0180 5 KFRVLSGIQPSGKLHLGNYLGAI----RNWVLLQEEYYECFFF-IADLHAI------TVRQDPTEEDLRQATREVAADYL 73 (314)
T ss_pred CceEEecCCCCCCcchhHhHHHH----HHHHHHhcccCceEEE-EecHHHh------hcCCCChHHHHHHHHHHHHHHHH
Confidence 34567899999999999965542 333333445 365543 2232211 11234445667778889999999
Q ss_pred HcCCCC
Q 009329 119 DLQCLP 124 (537)
Q Consensus 119 ~l~i~~ 124 (537)
++||.+
T Consensus 74 A~GiDP 79 (314)
T COG0180 74 AVGLDP 79 (314)
T ss_pred HhccCc
Confidence 999984
No 128
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00038 Score=72.69 Aligned_cols=55 Identities=20% Similarity=0.067 Sum_probs=35.6
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeee-CCccccccCCCcccH
Q 009329 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTI 293 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~ 293 (537)
..|+.+||.|.-+-|... +-....++.. ..+-+|+..++- +|.|||||.||.++.
T Consensus 180 ~~dlq~GG~DQ~~ni~~g-rdl~rr~g~~--~~~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 180 NKDLQLGGSDQWGNILAG-RDLIRRLGQK--KVVGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred ccchhcCChHHHHHHHHH-HHHHHHhCCC--CeEEEEeccccCCCCCcccccCCCceEc
Confidence 457999999977766633 2222223332 234477766654 999999999995443
No 129
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=97.22 E-value=0.00085 Score=60.86 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHH-HHHH-HHHHhhhcccCchh-hhHHHHHHHHHHHHHHHHHHhhc
Q 009329 359 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA-LKFI-NSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRIL 435 (537)
Q Consensus 359 ~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l-~~~~-N~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~l~vL 435 (537)
|+|++..+..+.+.+.++| ++|++..|+.. +++| ...+ |.|++..++|...+ ....+. ....+..+++.++.+|
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~-i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKE-IMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHH-HHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHH-HHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhcc
Confidence 4689999999999999999 88999999999 9997 5666 99999998875422 112233 5567778888888888
Q ss_pred c-cCCCCChHHHHHHH
Q 009329 436 G-LLPPGAYSEVLQQL 450 (537)
Q Consensus 436 G-i~~~~~~~~~~~~~ 450 (537)
. |+|. .++++|+.+
T Consensus 78 ~P~~P~-~aEeiw~~l 92 (153)
T PF08264_consen 78 SPFMPF-IAEEIWQRL 92 (153)
T ss_dssp TTTSHH-HHHHHHHHC
T ss_pred CCCCcH-HHHHHHHHh
Confidence 4 8887 788999655
No 130
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=97.18 E-value=0.001 Score=74.03 Aligned_cols=87 Identities=8% Similarity=-0.004 Sum_probs=48.2
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
...+|--|+|.+||||. ++.=+-.+.+...|++|.+.. .|+-.-+ -...|.+...+.. ....+..++.++|
T Consensus 34 rv~sGi~PTG~lHLGng---~~~aik~~~~~q~g~~~~~lI--AD~HAlt---~~~~~~~l~~i~~-~~~~~~~~~lA~G 104 (682)
T PTZ00348 34 RCYDGFEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFWV--ADWFALM---NDKVGGELEKIRI-VGRYLIEVWKAAG 104 (682)
T ss_pred EEEEeeCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEEE--cchhhhc---CCCCCCCHHHHHH-HHHHHHHHHHHcC
Confidence 46778889999999992 222111222345799987652 2222111 0122334444332 2345677899999
Q ss_pred CCCC-CCccchhhhHHH
Q 009329 122 CLPP-TYQPRVSDHMEQ 137 (537)
Q Consensus 122 i~~~-~~~~r~s~~~~~ 137 (537)
+.+. ..+.+.|+++..
T Consensus 105 lDpeK~~~~~qSd~i~e 121 (682)
T PTZ00348 105 MDMDKVLFLWSSEEITN 121 (682)
T ss_pred CCccceEEEECcHhhhh
Confidence 9843 235566765544
No 131
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.13 E-value=0.0025 Score=66.99 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=41.9
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC
Q 009329 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (537)
Q Consensus 43 y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i 122 (537)
.++|-.|+|.+||||.-.++-- ..+.+...|++++|.. -|+-.-+ ...+|.++.+ ...++..++-++|+
T Consensus 5 vlSGiqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I--ADlHAlT------~~~dp~~lr~-~~~e~aa~~LA~Gl 73 (431)
T PRK12284 5 VLTGITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL--ADYHALI------KCDDPARIQR-STLEIAATWLAAGL 73 (431)
T ss_pred EEEEecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe--echhhcc------CCCCHHHHHH-HHHHHHHHHHHhCC
Confidence 6788999999999995444211 2223334589987552 2221101 1234444444 34557888899999
Q ss_pred CC
Q 009329 123 LP 124 (537)
Q Consensus 123 ~~ 124 (537)
.+
T Consensus 74 DP 75 (431)
T PRK12284 74 DP 75 (431)
T ss_pred Cc
Confidence 84
No 132
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0014 Score=69.71 Aligned_cols=97 Identities=27% Similarity=0.272 Sum_probs=68.5
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009329 37 PGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
+|+|.-=. +|-|+|.+||||+-..-+-=-++++. .| |-|+. .|| ..|+.=.++|-..+.++
T Consensus 246 GGkV~TRF-PPEPNG~LHIGHaKAInvNFgyAk~~--~G--~cyLR-fDD-------------TNPEkEee~yf~sI~e~ 306 (764)
T KOG1148|consen 246 GGKVVTRF-PPEPNGILHIGHAKAINVNFGYAKAH--GG--VCYLR-FDD-------------TNPEKEEEEYFESIKEM 306 (764)
T ss_pred CCeeEEeC-CCCCCceeeecchhheeechhhhhhh--CC--eEEEe-cCC-------------CCcchhhHHHHHHHHHH
Confidence 44443322 58899999999987653322233321 12 22222 232 34666677899999999
Q ss_pred HHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceee
Q 009329 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYV 153 (537)
Q Consensus 117 l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~ 153 (537)
.++||.. |-.....|+|.+++-++-..|+.+|+||+
T Consensus 307 V~WLG~~-P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 307 VAWLGFE-PYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred HHHhCCC-ceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 9999998 56677888999999999999999999994
No 133
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.86 E-value=0.0018 Score=67.37 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=43.5
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
...+|--|+|.+||||.-.+ +..+.+. .|+++.+. +.|+-.-+. ...++.++ ..+...+..++-++
T Consensus 4 ~v~sGiqPSG~~HLGnylG~-----ik~wv~lq~~~~~~~~--IADlHAlt~-----~~~d~~~i-r~~~~~~~a~~lA~ 70 (398)
T PRK12283 4 RVLSGMRPTGRLHLGHYHGV-----LKNWVKLQHEYECFFF--VADWHALTT-----HYETPEVI-EKNVWDMVIDWLAA 70 (398)
T ss_pred EEEEEeCCCCcchHHHHHHH-----HHHHHHHhcCCcEEEE--eecHHHHhC-----CCCCHHHH-HHHHHHHHHHHHHc
Confidence 46778889999999995554 3455553 57776533 333322111 11244444 44667789999999
Q ss_pred CCCC
Q 009329 121 QCLP 124 (537)
Q Consensus 121 ~i~~ 124 (537)
|+.+
T Consensus 71 GlDP 74 (398)
T PRK12283 71 GVDP 74 (398)
T ss_pred CCCc
Confidence 9984
No 134
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.79 E-value=0.0023 Score=67.11 Aligned_cols=38 Identities=21% Similarity=0.132 Sum_probs=27.0
Q ss_pred eEEEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEEc
Q 009329 41 GMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (537)
Q Consensus 41 ~~y~~gPt~yg-~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~ 82 (537)
....||--|+| .+||||+-+ .-.++ .+...|++|.++.
T Consensus 31 ~~vy~G~dPTg~~lHlGh~v~---l~~l~-~lq~~G~~~~ili 69 (377)
T TIGR00234 31 IKLYVGFDPTAPSLHLGHLVP---LLKLR-DFQQAGHEVIVLL 69 (377)
T ss_pred CEEEEeeCCCCCCccHHHHHH---HHHHH-HHHHCCCcEEEEE
Confidence 35667888888 999999543 33344 4455899998774
No 135
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0084 Score=65.58 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCcceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH
Q 009329 37 PGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (537)
Q Consensus 37 ~~~v~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~ 97 (537)
.++.+++++-|-|| |.+|+||+-+.--.|+..=|.|++|++|.|..|...-|-+|...|.+
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdK 103 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADK 103 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHH
Confidence 35678999999999 99999999999999999999999999999999998888777666544
No 136
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.66 E-value=0.0037 Score=64.52 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=41.1
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
...+|--|+|.+||||.-..+. -+.++.+ +++|.++. .|+-.-+- ..++++ ...+...+..++-++|
T Consensus 3 ~v~~G~~PTG~lHLG~~~g~~~--~~~~lQ~--~~~~~~~I--aD~ha~t~------~~~~~~-i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 3 RVLSGIQPTGKLHLGNYLGAIK--NWVELQD--EYECFFCI--ADLHALTV------PQDPEE-LRENTRELAADYLACG 69 (333)
T ss_pred EEEEeeCCCccchHHhHHHHHH--HHHHHHh--cCCeEEEE--ecHHHHhC------CCCHHH-HHHHHHHHHHHHHeEc
Confidence 3566788889999999654432 1333333 37777654 22221110 124433 4446677888888999
Q ss_pred CCC
Q 009329 122 CLP 124 (537)
Q Consensus 122 i~~ 124 (537)
+.+
T Consensus 70 lDp 72 (333)
T PRK00927 70 IDP 72 (333)
T ss_pred cCh
Confidence 974
No 137
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.023 Score=59.77 Aligned_cols=52 Identities=48% Similarity=0.670 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhcCCChhHhHHHHHHcHhCCCEEEecCCceEEEeCCcc
Q 009329 462 EEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLV 513 (537)
Q Consensus 462 ~~~i~~li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~W~~~~~~ 513 (537)
.+++.+..++|..++++|+++.+|++|+++...||.++|.|.++.|+..-++
T Consensus 525 ~e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~~~f~~~~ys 576 (586)
T KOG2007|consen 525 REELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPEEMFRPDKYS 576 (586)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhhcCChhhhccccccc
Confidence 3456677888999999999999999999999999999999999999985443
No 138
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.1 Score=47.30 Aligned_cols=88 Identities=23% Similarity=0.264 Sum_probs=57.5
Q ss_pred HHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHH
Q 009329 67 LYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQII 146 (537)
Q Consensus 67 l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~ 146 (537)
|+|+||..||++.|.++.. |++|+.-|..+|.=. ++. =...+.+. ++|+. .++.+..++..++.+++.++-
T Consensus 18 LARwLRllGydt~~~~~~~--d~~i~~i~~~e~rIl--lTR-Dr~L~~r~--k~g~~--~i~i~~~s~~~Ql~e~~~~~~ 88 (165)
T COG1656 18 LARWLRLLGYDTVYSSNES--DDEIILIAKKEGRIL--LTR-DRELYKRA--KLGIK--AILIRSDSIEEQLAEFLARLG 88 (165)
T ss_pred HHHHHHHcCCceeeeccCC--cHHHHHHHhcCCeEE--Eec-cHHHHHHh--hccCc--eEEEeCCCHHHHHHHHHHHhc
Confidence 8999999999999998444 466777776665311 111 01122222 56664 567777778888999988886
Q ss_pred HCCceeeeecceeecCCCCCCCCC
Q 009329 147 NNDCAYVVEGDVFFAVEKSPNYGR 170 (537)
Q Consensus 147 ~~G~ay~~~~~v~f~~~~~~~yG~ 170 (537)
.++. ....-+.||.|+.
T Consensus 89 l~~~-------~~~e~~RCp~CN~ 105 (165)
T COG1656 89 LKPR-------LFPEFSRCPECNG 105 (165)
T ss_pred cchh-------cccccccCcccCC
Confidence 6552 2233567999974
No 139
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=78.62 E-value=2.6 Score=38.08 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=26.9
Q ss_pred HHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCC
Q 009329 67 LYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGE 100 (537)
Q Consensus 67 l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~ 100 (537)
++|+||..||||.|+.+++ |..|+..|.++|.
T Consensus 12 Lar~LR~lG~Dt~~~~~~~--D~~il~~A~~e~R 43 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDID--DDEILELAREEGR 43 (147)
T ss_pred HHHHHHHCCCcEEEeCCCC--hHHHHHHhhhCCe
Confidence 7999999999999999775 4557888888775
No 140
>PLN02886 aminoacyl-tRNA ligase
Probab=71.50 E-value=2.6 Score=44.24 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=42.9
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
..++|--|+|.+||||.-.++ ..+.++ .|+++.|. |.|+-.-+ ...++.++. .+...+..++-++
T Consensus 48 ~v~sGiqPSG~lHLGnylGai-----~~~v~lQ~~~~~~~~--IADlHAlt------~~~~~~~lr-~~~~~~~a~~lA~ 113 (389)
T PLN02886 48 RVVSGVQPTGSIHLGNYLGAI-----KNWVALQETYDTFFC--VVDLHAIT------LPHDPRELG-KATRSTAAIYLAC 113 (389)
T ss_pred eEEEEECCCCccHHHHHHHHH-----HHHHHHhccCCEEEE--EecHHHhh------CCCCHHHHH-HHHHHHHHHHHHc
Confidence 477889999999999954442 333332 38887533 33332211 123555444 4566788899999
Q ss_pred CCCC
Q 009329 121 QCLP 124 (537)
Q Consensus 121 ~i~~ 124 (537)
|+.+
T Consensus 114 GlDP 117 (389)
T PLN02886 114 GIDP 117 (389)
T ss_pred CcCc
Confidence 9984
No 141
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=70.60 E-value=23 Score=40.25 Aligned_cols=98 Identities=6% Similarity=0.009 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcCccccC---C-----CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHh
Q 009329 332 VFYIYQTLQDCEVALSPFQEH---G-----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (537)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~---~-----~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~ 403 (537)
...+..++.|+..++++.... . ...+.++.|...+..+...+..++ ..-++..++.. |.+|...++.|++
T Consensus 568 ~~~l~~~~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD 645 (682)
T PRK01233 568 FKALAAANKRVSNILKKAEGKVSGEVDPALFEEPAEKALYAALEELKPKVEPAL-AAGDYQAALEA-LAALRPPVDAFFD 645 (682)
T ss_pred HHHHHHHHHHHHHHHhccccccCCccChhHcCCHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHhhhhHHHHHhC
Confidence 446667778888877664311 0 012345667777777777777777 55588999999 9999999999999
Q ss_pred hhcccCc-hhhhHHHHHHHHHHHHHHHHH
Q 009329 404 MLKKKQP-KQQQLSLIESLRKIENEVKEV 431 (537)
Q Consensus 404 ~~~~~~~-~~~~~~~~~~l~~~~~~l~~~ 431 (537)
..-+-.. .+....|+.++..+...+..+
T Consensus 646 ~VmVm~~d~~iR~NRL~LL~~i~~~f~~i 674 (682)
T PRK01233 646 NVMVMAEDEALRANRLALLASLRELFLRV 674 (682)
T ss_pred CCeeeCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8665433 233455776666655554443
No 142
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=68.59 E-value=9.1 Score=25.58 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCChhHhHHHHHHcHh
Q 009329 464 DVLQLIEERAAARKNKDFSKSDQIRADLTR 493 (537)
Q Consensus 464 ~i~~li~~R~~AR~~Kdf~~AD~IRd~L~~ 493 (537)
.|..|-..-..|-++-||+.|=.|||++..
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~ 32 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKA 32 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 455666777788889999999999998765
No 143
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=67.85 E-value=19 Score=38.03 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=58.0
Q ss_pred CCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhh---------------HHHHHHHHHcCCC---hHHH
Q 009329 46 GVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD---------------DKIIRRANDLGEN---PLSL 105 (537)
Q Consensus 46 gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d---------------~ki~~~a~~~g~~---~~~~ 105 (537)
||+|. |.+|++|++.+- +-+=..|..+.|+| ..|...+++.|.+ ..+.
T Consensus 41 ~~~v~icGD~Hl~NFG~~~------------~~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~~gl~~~~~~~~ 108 (385)
T PF10009_consen 41 GPPVWICGDAHLENFGAFA------------SPEGRVVFDINDFDEALPGPFEWDLKRLATSIVLAARENGLSDKDARKA 108 (385)
T ss_pred CCceEEeccchhhccCccc------------CCCCCEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44444 999999999863 44455566666665 3577888888886 5678
Q ss_pred HHHHHHHHHHHHHHcCCCCCC-Cc-cchhhhHHHHHHHHHHHHHC
Q 009329 106 SNRYCQEYLVDMADLQCLPPT-YQ-PRVSDHMEQIKDMITQIINN 148 (537)
Q Consensus 106 ~~~~~~~~~~~l~~l~i~~~~-~~-~r~s~~~~~~~~~i~~L~~~ 148 (537)
++.+.+.|.+.|..+.=.... .+ .........+.+++++..++
T Consensus 109 ~~~~~~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka~~r 153 (385)
T PF10009_consen 109 VRAFLEGYREALADYAGMDPLDVWYFTPDNASGPVRKALKKARKR 153 (385)
T ss_pred HHHHHHHHHHHHHHhcCCChhhceecCchhhHHHHHHHHHHHHHh
Confidence 888999999888886554211 11 11123334455555555544
No 144
>PLN02886 aminoacyl-tRNA ligase
Probab=67.56 E-value=17 Score=38.32 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=17.9
Q ss_pred HHHHhhcCCCeeEEEecccCcCccchh
Q 009329 227 AMSAHYLSSKFDIHGGGIDLIFPHHEN 253 (537)
Q Consensus 227 ~m~~~~~g~~~dih~~G~Dl~f~H~~~ 253 (537)
-|+..+|-...++..+|.|+. +|++.
T Consensus 175 LqAADILl~~a~~VPVG~DQ~-qH~eL 200 (389)
T PLN02886 175 LMASDILLYQADLVPVGEDQK-QHLEL 200 (389)
T ss_pred HHHhhhhhcCCCeEEEccchH-HHHHH
Confidence 455555555778999999965 46654
No 145
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=65.87 E-value=30 Score=39.37 Aligned_cols=98 Identities=6% Similarity=-0.027 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcCccccC---CC-----CCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHh
Q 009329 332 VFYIYQTLQDCEVALSPFQEH---GK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (537)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~---~~-----~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~ 403 (537)
...+..++.|+..++++.... .. .++.++.|...+..+...+...+ ..-++..++.. |.+|...++.|++
T Consensus 578 ~~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD 655 (691)
T TIGR00211 578 AEALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESF-ESGDYETALEA-LAELRAPVDEFFD 655 (691)
T ss_pred HHHHHHHHHHHHHHHhcccccccCccChhHcCCHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHHhhhHHHHHhC
Confidence 456777788888887664311 00 12344566666666666667666 44478899999 9999999999999
Q ss_pred hhcccCc-hhhhHHHHHHHHHHHHHHHHH
Q 009329 404 MLKKKQP-KQQQLSLIESLRKIENEVKEV 431 (537)
Q Consensus 404 ~~~~~~~-~~~~~~~~~~l~~~~~~l~~~ 431 (537)
..-+-.. .+....|+.++..+...+..+
T Consensus 656 ~VmVm~~d~~iR~NRL~LL~~i~~lf~~i 684 (691)
T TIGR00211 656 SVMVMADDIELRQNRLNFLWGLRQLFLEV 684 (691)
T ss_pred CCEeeCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8765433 233456777766666555443
No 146
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=63.66 E-value=21 Score=36.20 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=49.3
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHCCCceEEE------cCcchhhHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHHc
Q 009329 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYV------RNFTDVDDKIIRRAND-LGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 51 g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v------~~idd~d~ki~~~a~~-~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
|+--+--+.--..+|+|+|-|+..|.+|.-+ +++.+ -+++..++++ -+..+++..+.|-+.|.+++...
T Consensus 176 g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~-~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~~~ 251 (322)
T KOG1610|consen 176 GPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN-PEKLEKRMKEIWERLPQETKDEYGEDYFEDYKKS 251 (322)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3333344555678999999999999999855 46665 4666666655 35667888888888888777653
No 147
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=60.35 E-value=55 Score=36.90 Aligned_cols=95 Identities=7% Similarity=0.052 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCcccc---CC-----CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhh
Q 009329 334 YIYQTLQDCEVALSPFQE---HG-----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNML 405 (537)
Q Consensus 334 ~l~~~~~~~~~~l~~~~~---~~-----~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~ 405 (537)
.+..++.|+..++.+... .. ...+.++.+...+..+...+.+++ ..-++..|+.. |.+|...+..|++..
T Consensus 579 ~l~~a~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~-a~~~y~~al~~-L~~L~~pId~FFd~V 656 (691)
T COG0751 579 ALAAANKRVSNILAKAEKKLSGTVDPSLFEEDAEKALFEALQALKPKVAEAL-AEKDYQDALAA-LAELRPPIDEFFDNV 656 (691)
T ss_pred HHHHHHHHHHHHHHhcccccCCccChHHhcCHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHH-HHHhhhhHHHHhcCc
Confidence 455667777777765432 00 013345667777888888888888 66788999999 999999999999886
Q ss_pred cccCc-hhhhHHHHHHHHHHHHHHHH
Q 009329 406 KKKQP-KQQQLSLIESLRKIENEVKE 430 (537)
Q Consensus 406 ~~~~~-~~~~~~~~~~l~~~~~~l~~ 430 (537)
-+-.. .+....|++++..+...+..
T Consensus 657 mVm~eD~~iR~NRLalL~~l~~~f~~ 682 (691)
T COG0751 657 MVMAEDEALRNNRLALLSKLRELFLK 682 (691)
T ss_pred eeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 65432 22344566666555554443
No 148
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.98 E-value=12 Score=37.39 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=47.9
Q ss_pred CCcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009329 37 PGKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 37 ~~~v~~y~~gPt~y-g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
.|+.-+..+|-.|. +.+||||+-+++ +..||.. -++|-.|..+|| |.|.+-+- ++. +-|..|..+-.+
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPFi----ftKwlQe-~F~vpLVIqlTD-DEKflwK~----l~~-eda~~~arENaK 150 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPFI----FTKWLQD-VFDVPLVIQLTD-DEKFLWKD----LTL-EDAKKYARENAK 150 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhHH----HHHHHHH-HhCCceEEEecc-cHHHHHhh----CcH-HHHHHHHHhccc
Confidence 46666777777777 999999999997 4555553 357888888887 44444332 222 223444444455
Q ss_pred HHHHcCCC
Q 009329 116 DMADLQCL 123 (537)
Q Consensus 116 ~l~~l~i~ 123 (537)
|.-++|..
T Consensus 151 DIia~GFD 158 (397)
T KOG2145|consen 151 DIIAVGFD 158 (397)
T ss_pred ceEEeccC
Confidence 55556654
No 149
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=54.81 E-value=71 Score=37.84 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCccccCCC-----CCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhc
Q 009329 332 VFYIYQTLQDCEVALSPFQEHGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (537)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~ 406 (537)
...+..+++|+..++++...... ..+.++.|...+..+...+... .-++..++.. |.+|...++.|+++.-
T Consensus 893 ~~~l~~a~kRv~NIl~k~~~~~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~---~~dy~~al~~-La~L~~~Id~FFD~Vm 968 (1000)
T PRK14908 893 FAEIAAALNRLKRILASLSFSVTDASLLLEPAELNLKQALDAFREELTEL---PIDLKDYVAA-AAELPQAVNTFFDEVL 968 (1000)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccChhhcCCHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHH-HHhhhhHHHHHhCCCE
Confidence 44677788888888766431110 1223445555555554444443 2367888999 9999999999999876
Q ss_pred ccCc-hhhhHHHHHHHHHHHHHHHHH
Q 009329 407 KKQP-KQQQLSLIESLRKIENEVKEV 431 (537)
Q Consensus 407 ~~~~-~~~~~~~~~~l~~~~~~l~~~ 431 (537)
+-.. .+....|+.++..+...+..+
T Consensus 969 Vm~eD~~iR~NRLaLL~~i~~lf~~v 994 (1000)
T PRK14908 969 VMADDEAIRNARLGLLAAIRDLKFGV 994 (1000)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 5433 233456777666665555443
No 150
>PRK13671 hypothetical protein; Provisional
Probab=47.86 E-value=81 Score=32.01 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=42.2
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHCCCce-EEEcCcchh--h-----HH--HHHHHHHcCCC-----h----HHHHHHH
Q 009329 49 AYDLSHLGHARAAVSFDLLYRYLEHLKCEV-TYVRNFTDV--D-----DK--IIRRANDLGEN-----P----LSLSNRY 109 (537)
Q Consensus 49 ~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V-~~v~~idd~--d-----~k--i~~~a~~~g~~-----~----~~~~~~~ 109 (537)
-|+|+|.||++- +....+..|.+. .+|+.-+-. + ++ =..-+.+.|.+ | -.-|+.|
T Consensus 8 eFNP~H~GHl~~------~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~F 81 (298)
T PRK13671 8 EYNPFHNGHIYQ------INYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIF 81 (298)
T ss_pred eeCCccHHHHHH------HHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHHH
Confidence 469999999875 455555566554 454422111 1 11 12334556877 2 3456778
Q ss_pred HHHHHHHHHHcCCC
Q 009329 110 CQEYLVDMADLQCL 123 (537)
Q Consensus 110 ~~~~~~~l~~l~i~ 123 (537)
...=...|+.|||.
T Consensus 82 A~gaV~lL~~lgvd 95 (298)
T PRK13671 82 AKGAIKKLNKEKID 95 (298)
T ss_pred HHHHHHHHHHcCCC
Confidence 88888999999975
No 151
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=47.25 E-value=29 Score=28.57 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=25.2
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceE
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVT 79 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~ 79 (537)
+|++||- +|.+ -.+.-.++-.++.|+..||.|.
T Consensus 1 iYIaGPm-tG~~----~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 1 IYIAGPM-TGLP----DYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred CeEeCCc-CCCc----chHHHHHHHHHHHHHHCCCEEe
Confidence 5899994 4555 2345677889999999998887
No 152
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=47.04 E-value=72 Score=26.12 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=44.5
Q ss_pred EEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchh-hhHHHHHHHHHHHHH
Q 009329 80 YVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS-DHMEQIKDMITQIIN 147 (537)
Q Consensus 80 ~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s-~~~~~~~~~i~~L~~ 147 (537)
...|...+.++|+..|++.|++.++ -....+.|..|.+. +..|... +-+.++..|+.++-+
T Consensus 26 vA~G~G~iAe~II~~Ake~~Vpi~e-----dp~Lv~~L~~lelg--~~IPeelY~vVAEifafi~~~~~ 87 (92)
T COG2257 26 VASGKGEIAEKIIEKAKEHGVPIQE-----DPLLVELLLKLELG--DEIPEELYEVVAEIFAFIYEVDN 87 (92)
T ss_pred EeecchHHHHHHHHHHHHcCCCccc-----CHHHHHHHHhcccc--ccCCHHHHHHHHHHHHHHHHHHc
Confidence 4468888999999999999998754 34567788888885 5566554 556667777766543
No 153
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.75 E-value=31 Score=35.98 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=29.2
Q ss_pred eEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcC--cchhhH
Q 009329 41 GMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN--FTDVDD 89 (537)
Q Consensus 41 ~~y~~gPt~y-g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~--idd~d~ 89 (537)
....||--|. ..+||||+-..+. |.++ ...|++++-+.| +.-+||
T Consensus 64 ~~vYcGfDPTA~SLHvGNLl~lm~---L~hf-qr~Gh~~ialIGgATa~vGD 111 (467)
T KOG2623|consen 64 QYVYCGFDPTAESLHVGNLLALMV---LIHF-QRAGHRPIALIGGATASVGD 111 (467)
T ss_pred ceEEecCCCcHHhhhhcchHHHHH---HHHH-HHcCCCceEEeccccccccC
Confidence 3456787777 9999999766542 3443 347999886654 334444
No 154
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=44.18 E-value=9.7 Score=37.95 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=39.8
Q ss_pred ceEEEeCCCCCCCCCcchhhHHH-HHHHHHHHHHHCCCceEEEc--------CcchhhHHHHHHHHHcCCChHHHHHHHH
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAV-SFDLLYRYLEHLKCEVTYVR--------NFTDVDDKIIRRANDLGENPLSLSNRYC 110 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v-~~D~l~R~l~~~G~~V~~v~--------~idd~d~ki~~~a~~~g~~~~~~~~~~~ 110 (537)
.++|- |--|+|.+|||-.-+.. ++|++ ..|.+|+... |.--=+.++ ..-+..|.
T Consensus 35 l~~Yw-GtaptGrpHiay~vpm~kiadfl-----kAGC~VtIl~AD~hA~LdNmkap~e~~-----------~~rv~yYe 97 (360)
T KOG2144|consen 35 LKCYW-GTAPTGRPHIAYFVPMMKIADFL-----KAGCEVTILFADLHAFLDNMKAPDELV-----------IRRVGYYE 97 (360)
T ss_pred ceeee-cCCCCCCcceeeeeehhHHHHHH-----hcCCeEEEEehHHHHHHhcccchHHHH-----------HHHHHHHH
Confidence 34443 55578999999854332 34433 3698888442 111111222 23456688
Q ss_pred HHHHHHHHHcCCC
Q 009329 111 QEYLVDMADLQCL 123 (537)
Q Consensus 111 ~~~~~~l~~l~i~ 123 (537)
..+...+..+|+.
T Consensus 98 ~~Ik~~l~~~nv~ 110 (360)
T KOG2144|consen 98 KEIKAALGSINVP 110 (360)
T ss_pred HHHHHHHhhcCCc
Confidence 8888888888885
No 155
>PLN02413 choline-phosphate cytidylyltransferase
Probab=43.08 E-value=27 Score=34.98 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCc
Q 009329 36 VPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNF 84 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~i 84 (537)
.+..+++|+.| +++-+|.||++-. .+. +..|-.+..|.|+
T Consensus 24 ~~r~~rVyvdG--~FDLfH~GHir~L------~qA-K~lg~~d~LIVGV 63 (294)
T PLN02413 24 SDRPVRVYADG--IYDLFHFGHARSL------EQA-KKLFPNTYLLVGC 63 (294)
T ss_pred CCCceEEEEeC--chhhCCHHHHHHH------HHH-HHhCCCCEEEEEe
Confidence 44577888886 7899999999864 222 4445345556655
No 156
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.56 E-value=54 Score=30.78 Aligned_cols=86 Identities=17% Similarity=0.010 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCc-----cchh
Q 009329 58 ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQ-----PRVS 132 (537)
Q Consensus 58 ~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~-----~r~s 132 (537)
+++.|.-|+|...|+.+||.|.+-.+. +. .+.+|.++.+ ...+..+.++..-..+-+.- .-+|
T Consensus 85 a~p~Vp~~vl~daLk~~GyrVevr~~~--l~---------T~ap~~ev~E-~vreLse~~~E~~~~~lt~~vrklVv~~S 152 (204)
T COG3286 85 ASPNVPPDVLIDALKLLGYRVEVRGGE--LK---------TNAPWSEVVE-LVRELSEVYREARFQPLTRQVRKLVVAVS 152 (204)
T ss_pred hcCCCCHHHHHHHHHhCCceEEeeCce--ee---------cCCCHHHHHH-HHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 446688899999999999999987765 22 2455554433 33333334333333211100 0011
Q ss_pred -hhHHHHHHHHHHHHHCCceeeee
Q 009329 133 -DHMEQIKDMITQIINNDCAYVVE 155 (537)
Q Consensus 133 -~~~~~~~~~i~~L~~~G~ay~~~ 155 (537)
.+--...+.++.+++.|++-+.+
T Consensus 153 ~~~~~~~dd~~eeave~Gll~e~E 176 (204)
T COG3286 153 IVYGLDPDDAAEEAVELGLLEEGE 176 (204)
T ss_pred hHhCCCHHHHHHHHHHhhhhhccc
Confidence 12223567788999999976543
No 157
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=38.59 E-value=31 Score=29.92 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=23.5
Q ss_pred cchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhH
Q 009329 55 LGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD 89 (537)
Q Consensus 55 iGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ 89 (537)
-||..+++ .|++.|+.+|++|.+... .++.+
T Consensus 9 ~Ghv~P~l---ala~~L~~rGh~V~~~~~-~~~~~ 39 (139)
T PF03033_consen 9 RGHVYPFL---ALARALRRRGHEVRLATP-PDFRE 39 (139)
T ss_dssp HHHHHHHH---HHHHHHHHTT-EEEEEET-GGGHH
T ss_pred hhHHHHHH---HHHHHHhccCCeEEEeec-cccee
Confidence 59999887 699999999999996665 33433
No 158
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=36.44 E-value=18 Score=30.25 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=11.8
Q ss_pred eCCCCCCCCCcchhhH
Q 009329 45 CGVTAYDLSHLGHARA 60 (537)
Q Consensus 45 ~gPt~yg~~HiGh~r~ 60 (537)
.|.++ |++|+||..-
T Consensus 4 ~~G~F-dp~H~GH~~l 18 (105)
T cd02156 4 FPGEP-GYLHIGHAKL 18 (105)
T ss_pred eCCCC-CCCCHHHHHH
Confidence 46667 9999999763
No 159
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.55 E-value=1.3e+02 Score=26.59 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCC
Q 009329 61 AVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGE 100 (537)
Q Consensus 61 ~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~ 100 (537)
-+-.++++++|+..|++|.+.-...... .++..|.+.+.
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~~s~e-~~v~aa~e~~a 54 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLFQTPE-EIARQAVEADV 54 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCCCCHH-HHHHHHHHcCC
Confidence 3456889999999999999776544333 45555555443
No 160
>PLN02200 adenylate kinase family protein
Probab=32.58 E-value=1.3e+02 Score=29.28 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=29.9
Q ss_pred CCCCCceeeeeccCCCccccc-----cCCCCcceEEEeCCCCCCCCCcch
Q 009329 13 PKMDLTLKIYNSMTQQKELFT-----PIVPGKVGMYVCGVTAYDLSHLGH 57 (537)
Q Consensus 13 ~~~~~~l~l~ntl~~~~~~f~-----p~~~~~v~~y~~gPt~yg~~HiGh 57 (537)
.+.+.+|+.+|+.+.+.-.+. |.......+.++||.=.|.-.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~ 61 (234)
T PLN02200 12 SQAASGLKIWESFSTEIITLEERGSSSKEKTPFITFVLGGPGSGKGTQCE 61 (234)
T ss_pred HHHhhhheecccccccccccccccCCccCCCCEEEEEECCCCCCHHHHHH
Confidence 455678999999999754442 222234578899998777655543
No 161
>PRK09620 hypothetical protein; Provisional
Probab=32.26 E-value=64 Score=31.37 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=37.2
Q ss_pred CcceEEEeCCCCC---CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcc
Q 009329 38 GKVGMYVCGVTAY---DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (537)
Q Consensus 38 ~~v~~y~~gPt~y---g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~id 85 (537)
|+.-+.++|||.= ..=.|+|..+--+|--+++.|..+|++|.++.|..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4555677788743 34478887777888889999999999999998764
No 162
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.85 E-value=1.4e+02 Score=26.54 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=43.5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCC
Q 009329 48 TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTY 127 (537)
Q Consensus 48 t~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~ 127 (537)
||-|..|- +-..++.+.|+..||+|.+.- .+---+.++..|++++. +.++++.
T Consensus 8 tv~~D~Hd------iGk~iv~~~l~~~GfeVi~LG-~~v~~e~~v~aa~~~~a-----------------diVglS~--- 60 (134)
T TIGR01501 8 VIGSDCHA------VGNKILDHAFTNAGFNVVNLG-VLSPQEEFIKAAIETKA-----------------DAILVSS--- 60 (134)
T ss_pred EecCChhh------HhHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCC-----------------CEEEEec---
Confidence 34455552 334678999999999999653 22222345555544432 2233331
Q ss_pred ccchhhhHHHHHHHHHHHHHCCc
Q 009329 128 QPRVSDHMEQIKDMITQIINNDC 150 (537)
Q Consensus 128 ~~r~s~~~~~~~~~i~~L~~~G~ 150 (537)
..+.|...+.++++.|.++|+
T Consensus 61 --l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 61 --LYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred --ccccCHHHHHHHHHHHHHCCC
Confidence 124566677778888888876
No 163
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=30.95 E-value=24 Score=35.35 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=27.8
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcc
Q 009329 37 PGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~id 85 (537)
...|+||.-| +|+-.|.||||....+ -..+ -+|..+.|+.
T Consensus 61 ~RPVRVYADG--IyDLFH~GHarqL~Qa------K~~F-PNvyLiVGvc 100 (348)
T KOG2804|consen 61 DRPVRVYADG--IYDLFHYGHARQLEQA------KKLF-PNVYLIVGVC 100 (348)
T ss_pred CCceEEEccc--hHHHhhhhHHHHHHHH------HHhC-CCeEEEEeec
Confidence 3568999988 7999999999986432 2222 3477666654
No 164
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.87 E-value=1.4e+02 Score=30.44 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCceE--EEcCcchhhHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHH
Q 009329 66 LLYRYLEHLKCEVT--YVRNFTDVDDKIIRRANDLG-ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMI 142 (537)
Q Consensus 66 ~l~R~l~~~G~~V~--~v~~idd~d~ki~~~a~~~g-~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i 142 (537)
+-++.|+.+||+|+ |..|+++.|+ -| .-|. ++=...-....+.|||. .+..--+.||-..+.+-+
T Consensus 20 Vaa~Ll~~~g~~v~gv~M~nWd~~de--------~~s~cp~---e~D~~da~~Vc~~LnI~-~~~Vnf~kEYW~~Vfs~~ 87 (377)
T KOG2805|consen 20 VAARLLAARGYNVTGVFMKNWDSLDE--------FGSQCPA---ERDWKDAKRVCKQLNIP-LHQVNFVKEYWNDVFSPF 87 (377)
T ss_pred HHHHHHHhcCCCeeEEeeeccccccc--------cccCCCc---hhhHHHHHHHHHHhCCe-eEEEeeHHHHHHHHHHHH
Confidence 45778888999999 6678877764 11 1111 11112234556777775 343334446777777777
Q ss_pred HHHHHCCc
Q 009329 143 TQIINNDC 150 (537)
Q Consensus 143 ~~L~~~G~ 150 (537)
.+.+++|.
T Consensus 88 L~~Y~~G~ 95 (377)
T KOG2805|consen 88 LEEYENGR 95 (377)
T ss_pred HHHHhcCC
Confidence 77777775
No 165
>KOG0909 consensus Peptide:N-glycanase [Posttranslational modification, protein turnover, chaperones]
Probab=27.48 E-value=1.2e+02 Score=32.20 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=38.1
Q ss_pred CCCcceEEEe--CCCCC------CCCCcch---hhHHHHHHHHHHHHHHCCCceEEEcCcchh
Q 009329 36 VPGKVGMYVC--GVTAY------DLSHLGH---ARAAVSFDLLYRYLEHLKCEVTYVRNFTDV 87 (537)
Q Consensus 36 ~~~~v~~y~~--gPt~y------g~~HiGh---~r~~v~~D~l~R~l~~~G~~V~~v~~idd~ 87 (537)
..++|-+|.| .+|-. ++.-|=- .|+-=.|.++.-++|..|++++||.+.+||
T Consensus 188 Ga~rVEiy~C~~C~~~~RFPRYNdp~kLLeTRkGRCGEWANCFTllcralg~daR~i~d~tDH 250 (500)
T KOG0909|consen 188 GAGRVEIYKCNRCGTETRFPRYNDPIKLLETRKGRCGEWANCFTLLCRALGLDARYIWDRTDH 250 (500)
T ss_pred CCceEEEEEecCCCCcccCcccCCHHHHHhhccCccchHHHHHHHHHHHcCCcceEEeecCcc
Confidence 3479999999 34433 4433322 244456788889999999999999999998
No 166
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=27.11 E-value=1.8e+02 Score=28.03 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=63.7
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009329 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
+..||-+.++.+=+-|+.++ +...++-.+..|.||-.-. ++ +--+.|.+.+.+.++.+|
T Consensus 4 L~Ls~~~~~~~~~~~~~~~~-----i~n~l~g~~~~i~FIPtAs--------------~~--~~~~~Yv~k~~~~l~~lg 62 (224)
T COG3340 4 LLLSSSTFSFEDVLEHFLPF-----IANFLQGKRKTIAFIPTAS--------------VD--SEDDFYVEKVRNALAKLG 62 (224)
T ss_pred EEecCCCcccchhhhhhhHH-----HHHHhcCCCceEEEEecCc--------------cc--cchHHHHHHHHHHHHHcC
Confidence 44556555665555566555 5666665566888886321 11 011558999999999999
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCC
Q 009329 122 CLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYG 169 (537)
Q Consensus 122 i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG 169 (537)
+. ++..++.+.+.+.+. ..|.+...+|+..|+-++-...+...|
T Consensus 63 ~~-v~~L~l~~~~~~~Ie---~~l~~~d~IyVgGGNTF~LL~~lke~g 106 (224)
T COG3340 63 LE-VSELHLSKPPLAAIE---NKLMKADIIYVGGGNTFNLLQELKETG 106 (224)
T ss_pred Ce-eeeeeccCCCHHHHH---HhhhhccEEEECCchHHHHHHHHHHhC
Confidence 98 455666555544433 567778888887776665444333333
No 167
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=26.91 E-value=1.7e+02 Score=27.32 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=43.1
Q ss_pred cCCCCcceEEEeCCCCC-CCCCcchhh--HHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH
Q 009329 34 PIVPGKVGMYVCGVTAY-DLSHLGHAR--AAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (537)
Q Consensus 34 p~~~~~v~~y~~gPt~y-g~~HiGh~r--~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~ 97 (537)
|.+-..-.||.|||.+. +..++|-++ +....|-+.+.+-.++ -|..+.|=...++.+....++
T Consensus 50 P~dl~g~~Iy~aGP~~~~~~~~v~s~GPTTs~RMd~~~~~~l~~~-G~~~~iGKG~~~~~~~ea~~~ 115 (184)
T COG1838 50 PVDLKGHIIYYAGPVKTKDGWVVGSAGPTTSGRMDKFTDELLEQT-GVLAMIGKGGRGPETVEACKK 115 (184)
T ss_pred CccCCCCEEEEeccccCCCCceeeccCCcchhhhhhhHHHHHHhc-CeEEEEecCCcCHHHHHHHHH
Confidence 34445567999999988 889999998 4456677777666554 466666666666655555444
No 168
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=26.34 E-value=2.7e+02 Score=20.63 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCCCCCccchhh-------hHHHHHHHHHHHHHCCceeeeecceee
Q 009329 109 YCQEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFF 160 (537)
Q Consensus 109 ~~~~~~~~l~~l~i~~~~~~~r~s~-------~~~~~~~~i~~L~~~G~ay~~~~~v~f 160 (537)
-.+.+.+.+..-.+.+.+.+|...+ ....+.+.+..|.+.|+++...+..+|
T Consensus 5 i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~~G~~ 63 (64)
T PF00392_consen 5 IYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRPGRGTF 63 (64)
T ss_dssp HHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECCceEE
Confidence 3344555555555554455654442 235689999999999999988777765
No 169
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=25.71 E-value=88 Score=23.21 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=17.7
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCc
Q 009329 49 AYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNF 84 (537)
Q Consensus 49 ~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~i 84 (537)
.++++|.||.+- +.+..+..+ ++..+...
T Consensus 7 ~Fdp~H~GH~~~------l~~a~~~~~-~~vv~i~~ 35 (66)
T TIGR00125 7 TFDPFHLGHLDL------LERAKELFD-ELIVGVGS 35 (66)
T ss_pred ccCCCCHHHHHH------HHHHHHhCC-EEEEEECc
Confidence 569999999864 333344444 55555444
No 170
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.49 E-value=1e+02 Score=31.02 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=40.8
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009329 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
.+.+++|.-|.|.+||||.-.++--.+=---....|..|.|. +-|+- |.-.+.+|.. -++..-.....+-+
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~--vvDlH------aITvp~dp~~-lrq~~~dm~A~lLA 83 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFS--VVDLH------AITVPQDPAE-LRQATHDMAASLLA 83 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEE--Eeece------eecCCCChHH-HHHHHHHHHHHHHH
Confidence 467889999999999999655533322222222234444433 22221 1112334442 23344555666677
Q ss_pred cCCCC
Q 009329 120 LQCLP 124 (537)
Q Consensus 120 l~i~~ 124 (537)
.||.+
T Consensus 84 cGIdp 88 (347)
T KOG2713|consen 84 CGIDP 88 (347)
T ss_pred hccCc
Confidence 88874
No 171
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=24.78 E-value=62 Score=30.39 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCC--CCC-CcchhhHHHHHHHHHHHHHHCCCceEEEcCcch
Q 009329 38 GKVGMYVCGVTAY--DLS-HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTD 86 (537)
Q Consensus 38 ~~v~~y~~gPt~y--g~~-HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd 86 (537)
|+.-+.++|||-= ++. =|+|..+--.+-.|++.+..+|++|.+|.|-..
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~ 54 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS 54 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 3445566677632 333 367777788889999999999999999998754
No 172
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.43 E-value=50 Score=26.53 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCceEEEcCcchh---h--------------------HHHHHHHHHcCCChHHHHHHHHHHH
Q 009329 66 LLYRYLEHLKCEVTYVRNFTDV---D--------------------DKIIRRANDLGENPLSLSNRYCQEY 113 (537)
Q Consensus 66 ~l~R~l~~~G~~V~~v~~idd~---d--------------------~ki~~~a~~~g~~~~~~~~~~~~~~ 113 (537)
-++.+|+.+||+|.-+.+-.|. | -++|. ..|+++.++++.-.+.+
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVIn---A~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVIN---ASGLTAEEIVQEVEERL 79 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEe---cCCCCHHHHHHHHHHhh
Confidence 3678999999999966543311 1 12222 25889999888766543
No 173
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=23.67 E-value=1.1e+02 Score=27.64 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=22.1
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcc
Q 009329 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~id 85 (537)
.+|+. -.++++|.||+. +|.+..+. |..+....+.|
T Consensus 4 iv~~~--G~FD~~H~GHi~------~L~~A~~l-gd~liVgV~~D 39 (152)
T cd02173 4 VVYVD--GAFDLFHIGHIE------FLEKAREL-GDYLIVGVHDD 39 (152)
T ss_pred EEEEc--CcccCCCHHHHH------HHHHHHHc-CCEEEEEEeCc
Confidence 45554 467999999985 35665544 65554444433
No 174
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=23.56 E-value=1.2e+02 Score=27.48 Aligned_cols=20 Identities=55% Similarity=0.886 Sum_probs=15.7
Q ss_pred cceEEEeCCCCCCCCCcchhhH
Q 009329 39 KVGMYVCGVTAYDLSHLGHARA 60 (537)
Q Consensus 39 ~v~~y~~gPt~yg~~HiGh~r~ 60 (537)
.+++|++| .++.+|.||++-
T Consensus 2 ~~rV~~~G--~FDl~H~GHi~~ 21 (150)
T cd02174 2 PVRVYVDG--CFDLFHYGHANA 21 (150)
T ss_pred CeEEEEeC--ccCCCCHHHHHH
Confidence 35788877 569999999863
No 175
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.17 E-value=3e+02 Score=24.22 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHH
Q 009329 62 VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDM 141 (537)
Q Consensus 62 v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~ 141 (537)
+-.+++++.|+..||+|.+.- .+---..++..|.+++. +.++++. -.+.|...+.++
T Consensus 14 iGkniv~~~L~~~GfeVidLG-~~v~~e~~v~aa~~~~a-----------------diVglS~-----L~t~~~~~~~~~ 70 (128)
T cd02072 14 VGNKILDHAFTEAGFNVVNLG-VLSPQEEFIDAAIETDA-----------------DAILVSS-----LYGHGEIDCKGL 70 (128)
T ss_pred HHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCC-----------------CEEEEec-----cccCCHHHHHHH
Confidence 345778999999999998642 22112334444444322 2233321 123566667777
Q ss_pred HHHHHHCCc
Q 009329 142 ITQIINNDC 150 (537)
Q Consensus 142 i~~L~~~G~ 150 (537)
++.|.++|+
T Consensus 71 ~~~l~~~gl 79 (128)
T cd02072 71 REKCDEAGL 79 (128)
T ss_pred HHHHHHCCC
Confidence 777777776
No 176
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=22.27 E-value=5.1e+02 Score=22.42 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHH-H-CCCceEEEcCcchhhHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHHHHcC
Q 009329 60 AAVSFDLLYRYLE-H-LKCEVTYVRNFTDVDDKIIRRANDLGEN----------------PLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 60 ~~v~~D~l~R~l~-~-~G~~V~~v~~idd~d~ki~~~a~~~g~~----------------~~~~~~~~~~~~~~~l~~l~ 121 (537)
+|..+|.....-. + -+..++.|.-+.-++...+.+|.+.|.+ -...+.+-.....+.|+.+|
T Consensus 11 ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~G 90 (124)
T PF02662_consen 11 AYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELG 90 (124)
T ss_pred cHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC
Confidence 4455555542211 1 3455667777888888888888887644 24678888899999999999
Q ss_pred CCCCCCcc--chh-----hhHHHHHHHHHHHHHCC
Q 009329 122 CLPPTYQP--RVS-----DHMEQIKDMITQIINND 149 (537)
Q Consensus 122 i~~~~~~~--r~s-----~~~~~~~~~i~~L~~~G 149 (537)
|.+ +... ..+ ...+.+.+|.++|.+-|
T Consensus 91 i~~-eRv~~~~~~~~~~~~fa~~~~~f~~~i~~lG 124 (124)
T PF02662_consen 91 IEP-ERVRLYWISAPEGKRFAEIVNEFTERIKELG 124 (124)
T ss_pred CCh-hHeEEEEeCcccHHHHHHHHHHHHHHHHHcC
Confidence 984 4321 111 33445666666665543
No 177
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=22.02 E-value=1.1e+02 Score=31.85 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=28.5
Q ss_pred cCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcc
Q 009329 34 PIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (537)
Q Consensus 34 p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~id 85 (537)
|..++.+++|+.| .++-+|.||++-. |..+..|..+.+-.+.|
T Consensus 6 ~~~~~~~~v~~~G--~FD~vH~GH~~~L-------~qAk~~g~~Livgv~~d 48 (353)
T PTZ00308 6 PKKPGTIRVWVDG--CFDMLHFGHANAL-------RQARALGDELFVGCHSD 48 (353)
T ss_pred CCCCCcEEEEEEe--ecccCCHHHHHHH-------HHHHHhCCEEEEEeCCH
Confidence 3446778888887 6799999998742 33344565555555544
No 178
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=1e+02 Score=26.30 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=34.0
Q ss_pred HHHHHHcCCCCCCCccc---hhhhHHHHHHHHHHHHH-CCceeeee----cceeecCCCCCCCCC
Q 009329 114 LVDMADLQCLPPTYQPR---VSDHMEQIKDMITQIIN-NDCAYVVE----GDVFFAVEKSPNYGR 170 (537)
Q Consensus 114 ~~~l~~l~i~~~~~~~r---~s~~~~~~~~~i~~L~~-~G~ay~~~----~~v~f~~~~~~~yG~ 170 (537)
...++.||....-.+.. +..+-+.+-.+|..+++ ||++|... .++++|...++.|+.
T Consensus 23 l~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~~glvcl~~~g~~~e 87 (119)
T COG3171 23 LGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDWEGLVCLQRIGKCDE 87 (119)
T ss_pred HHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceeeeeeehHhhcCCccH
Confidence 34455666653233444 22455567777777776 49999653 356667666666664
No 179
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=21.27 E-value=5.6e+02 Score=22.38 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=45.5
Q ss_pred eEEEcCcchhhHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHHHHcCCCCCCCc----cchh---hh
Q 009329 78 VTYVRNFTDVDDKIIRRANDLGEN----------------PLSLSNRYCQEYLVDMADLQCLPPTYQ----PRVS---DH 134 (537)
Q Consensus 78 V~~v~~idd~d~ki~~~a~~~g~~----------------~~~~~~~~~~~~~~~l~~l~i~~~~~~----~r~s---~~ 134 (537)
++.|+-+.-++...+.+|.+.|.+ -...+.+-.+...+.++.|||.+ +.+ .-++ ..
T Consensus 32 iIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~-eRv~~~wiSa~E~ekf 110 (132)
T COG1908 32 IIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEP-ERVRVLWISAAEGEKF 110 (132)
T ss_pred EEEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCc-ceEEEEEEehhhHHHH
Confidence 445555556666666666665544 13456667778899999999984 422 2222 24
Q ss_pred HHHHHHHHHHHHHCCc
Q 009329 135 MEQIKDMITQIINNDC 150 (537)
Q Consensus 135 ~~~~~~~i~~L~~~G~ 150 (537)
.+.+.+|.+++.+-|-
T Consensus 111 ~e~~~efv~~i~~lGp 126 (132)
T COG1908 111 AETINEFVERIKELGP 126 (132)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4567788888877663
No 180
>PRK08116 hypothetical protein; Validated
Probab=20.74 E-value=84 Score=31.32 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=29.8
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcC
Q 009329 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~ 83 (537)
+.+.+|++||+=.|..||-++ +++.+...|+.|.|++.
T Consensus 113 ~~~gl~l~G~~GtGKThLa~a--------ia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAAC--------IANELIEKGVPVIFVNF 150 (268)
T ss_pred CCceEEEECCCCCCHHHHHHH--------HHHHHHHcCCeEEEEEH
Confidence 346799999998899998886 55666666999988863
Done!