RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009329
(537 letters)
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 295 bits (756), Expect = 3e-97
Identities = 168/314 (53%), Positives = 207/314 (65%), Gaps = 1/314 (0%)
Query: 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKI+N++T+QKE F PI G+VGMYVCG+T YDL H+GH R V+FD++ RYL L ++
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM-EQ 137
YVRN TD+DDKII+RAN+ GE+ +++ +R E D L L P +PR + H+ E
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 138 IKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
I+ I GDV F V P YG LS Q L+ +AG RV V KRNP DF
Sbjct: 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEPSW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMH+G V + EKMSKSLGNFFT+R + + Y +R+FL+S HYRS
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ 301
Query: 318 LNYSVLQLDSASDA 331
LNYS L A A
Sbjct: 302 LNYSEENLKQARAA 315
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 172 bits (435), Expect = 7e-50
Identities = 35/314 (11%), Positives = 81/314 (25%), Gaps = 24/314 (7%)
Query: 29 KELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD 88
++ + + G+T H+G+ R + ++ L EV ++ + D D
Sbjct: 8 DKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 67
Query: 89 -----------------DKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRV 131
I D S + + +++ ++ L
Sbjct: 68 RFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASE 127
Query: 132 SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRK 191
+ + I + + + + K + R + +
Sbjct: 128 LYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQ-PPLPENWWPAMVYCPEHRREAEIIE 186
Query: 192 RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251
+ +K + E D G + W ++ + D G D +
Sbjct: 187 WDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDW---PMRWSHFGVDFEPAGKDHLVAGS 243
Query: 252 ENEIAQSCA-ACQDSNVSYWMHNGHVTNNNE--KMSKSLGNFFTIRQITERYHPLALRHF 308
+ + + V + KMS S GN + + E P +R
Sbjct: 244 SYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFI 303
Query: 309 LISAHYRSPLNYSV 322
+ +
Sbjct: 304 YARHRPNKEIKIDL 317
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 144 bits (364), Expect = 2e-39
Identities = 49/325 (15%), Positives = 92/325 (28%), Gaps = 52/325 (16%)
Query: 48 TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSN 107
A HLGH + D+ RY EV ++ I+ +A LG P +
Sbjct: 12 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIG 71
Query: 108 RYCQEYLVDMADLQCLPPTYQPRVSD-HMEQIKDMITQIINNDCAYVVEGDVFFAVE--- 163
QE+ D A Y S+ + + + + +++ N + E
Sbjct: 72 EMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGM 131
Query: 164 ----------------KSPNY-GRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAG 206
S ++ L A+ + N +
Sbjct: 132 FLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQW 191
Query: 207 EPSWDSPWGPGRPGWHIECSAMSAHYLSSKF----------------------------D 238
+ S D+P+ +
Sbjct: 192 DISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAEL 251
Query: 239 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 298
H G D+++ H A + + ++H G+VT N KMSKS G F
Sbjct: 252 YHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLN 310
Query: 299 RYHPLALRHFLIS--AHYRSPLNYS 321
+ +LR++ + + ++ +
Sbjct: 311 HFDADSLRYYYTAKLSSRIDDIDLN 335
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 138 bits (347), Expect = 5e-37
Identities = 43/319 (13%), Positives = 80/319 (25%), Gaps = 51/319 (15%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
HLGHA V D L R+ ++ + + + R A GE+P + +R +
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRF 78
Query: 114 LVDMADLQCLPPTYQPRVSDHMEQIKDMIT-QIINNDCAYVVEGDVFFAVEKSPNYGRLS 172
L + + +++ ++ ++ Y E + + V Y
Sbjct: 79 KRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE 138
Query: 173 GQRLENNRAGERVAVDSRKRNPADFALWKAAKA--------------------------- 205
G V ++
Sbjct: 139 LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPI 198
Query: 206 -----GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA 260
P PWG P + + L + +
Sbjct: 199 GDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIG 258
Query: 261 ACQDSNVS-----------------YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 303
+ + + + KMSK+LGN + E+Y
Sbjct: 259 KDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRD 318
Query: 304 ALRHFLIS-AHYRSPLNYS 321
ALR++L+ Y S
Sbjct: 319 ALRYYLLREIPYGQDTPVS 337
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 134 bits (338), Expect = 9e-36
Identities = 43/338 (12%), Positives = 84/338 (24%), Gaps = 64/338 (18%)
Query: 48 TAYDLSHLGHARAA-VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS 106
A H GH A + D+ RYL +V ++ + I RA G +P +
Sbjct: 12 YANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIV 71
Query: 107 NRYCQEYLVDMADLQCLPPTYQPRVSDHMEQ-IKDMITQIINNDCAYVVEGDVFFAVE-- 163
+ + ++ + + + + ++ + N +
Sbjct: 72 DEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDK 131
Query: 164 ----------KSPNYGRLSGQ--------------------------------------- 174
P R S
Sbjct: 132 MFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEE 191
Query: 175 RLENNRAGERVAVDSRKRNPADFALWKAAKAG-EPSWDSPWGPGRPGWHIECSAMSAHYL 233
R + V + + L+ +A + R G E +
Sbjct: 192 RAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNID 251
Query: 234 SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN---------VSYWMHNGHVTNNNEKMS 284
IH G D I H A A + + N ++T +K S
Sbjct: 252 GQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFS 311
Query: 285 KSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYS 321
S + + + + LR++L + ++S
Sbjct: 312 TSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFS 349
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 80.8 bits (198), Expect = 7e-17
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 7/159 (4%)
Query: 179 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKF- 237
+ E + +R D G P+ + + L ++
Sbjct: 291 DLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPE 350
Query: 238 -----DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFF 291
D++ G D + I S A S + + +G V +KMSKSLGN
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 410
Query: 292 TIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 330
Q+ ++ R ++ S Y + + S L SD
Sbjct: 411 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449
Score = 48.8 bits (115), Expect = 1e-06
Identities = 23/187 (12%), Positives = 49/187 (26%), Gaps = 18/187 (9%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H+GHA + D + RY YV + I + G + +S +E
Sbjct: 64 HMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREK 123
Query: 114 LVDMADLQ---------------CLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDV 158
+ A Q Y ++ + ++ + Y + V
Sbjct: 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPV 183
Query: 159 FFAVEKSPNYGRLSGQRLENNRAG---ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWG 215
+++ + + + R A + + ++ WG
Sbjct: 184 YWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWG 243
Query: 216 PGRPGWH 222
R
Sbjct: 244 KTRIYNM 250
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 75.3 bits (184), Expect = 3e-15
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 26/246 (10%)
Query: 109 YCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY 168
E + +++ P Q + + + GD+ F E+
Sbjct: 177 PRCETTLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKV 236
Query: 169 GR----------LSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGR 218
+S Q ++ D + N + + SP
Sbjct: 237 NMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRD 296
Query: 219 PGWHIECSAMSAHYLSS--------------KFDIHGGGIDLIFPHHENEIAQSCAACQD 264
+ + LS+ D+ G D++F +
Sbjct: 297 EDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGE 356
Query: 265 SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSV 322
+ +G V + +KMSKS GN ++ ERY ALR LI A + +
Sbjct: 357 RPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDL 416
Query: 323 LQLDSA 328
L+ A
Sbjct: 417 RWLEMA 422
Score = 49.2 bits (116), Expect = 7e-07
Identities = 31/279 (11%), Positives = 67/279 (24%), Gaps = 30/279 (10%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTD----VDDKIIRRANDLGENPLSLSNRY 109
H+GHA D L RY E ++ + R G+ L
Sbjct: 50 HMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREK 109
Query: 110 CQ---------------EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV 154
+ L + ++ ++ + AY
Sbjct: 110 FLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA 169
Query: 155 EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD---FALWKAAKAGEPSWD 211
V + L + A+ + + K + G+ ++
Sbjct: 170 PRLVNWCPRCETTLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFV 229
Query: 212 SPWGPGR--------PGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ 263
W+I H + + + +++ P E SC AC
Sbjct: 230 PERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACG 289
Query: 264 DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHP 302
+ ++ S + + + ++P
Sbjct: 290 SPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYP 328
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 62.7 bits (151), Expect = 5e-11
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 2/116 (1%)
Query: 208 PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 267
W H S D GID +
Sbjct: 327 DVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAF 386
Query: 268 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYS 321
+ +G + + +KMSKS GN I ++ ALR ++ A + +
Sbjct: 387 KNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 442
Score = 38.0 bits (87), Expect = 0.002
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 20/125 (16%)
Query: 48 TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNF--------------------TDV 87
TA L H+GHA+A DL RY + ++
Sbjct: 48 TANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREI 107
Query: 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIIN 147
+ I R N + + + + +A L Y ++E I + + +
Sbjct: 108 EAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFD 167
Query: 148 NDCAY 152
Y
Sbjct: 168 RGLLY 172
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 54.1 bits (129), Expect = 2e-08
Identities = 30/265 (11%), Positives = 65/265 (24%), Gaps = 20/265 (7%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVT-----------------YVRNFTDVDDKIIRRAN 96
H GH R+ + L E L EV + + + + +
Sbjct: 24 HAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIH 83
Query: 97 DLGENPLSLSNRYCQ--EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV 154
L + + ++ + + + Y R+ D E+ + + +
Sbjct: 84 HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYI 143
Query: 155 EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW 214
+ ++ G + +A + L K + +
Sbjct: 144 DTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIV 203
Query: 215 GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNG 274
+ A + I +I + AQ + +
Sbjct: 204 QKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQ 263
Query: 275 HVTNNN-EKMSKSLGNFFTIRQITE 298
HV + MS G + I E
Sbjct: 264 HVNFGMVQGMSTRKGTVVFLDNILE 288
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 49.0 bits (116), Expect = 7e-07
Identities = 32/279 (11%), Positives = 65/279 (23%), Gaps = 42/279 (15%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H+G A A L+ Y + R + I R D + +
Sbjct: 15 HVGTAYIA-----LFNYA--------WARRN---GGRFIVRIEDT--DRARYVPGAEERI 56
Query: 114 LVDMADLQCLP--------PTYQPRVSDHMEQIKDMITQIINNDCAYV---VEGDVFFAV 162
L + L P R S+ + + +++ AY ++
Sbjct: 57 LAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIR 116
Query: 163 EKSPNYGRLSGQRLENNRAGE---------RVAVDSRKRNPADFALWKAAKAGEPSWDSP 213
++ Y + R+ V L
Sbjct: 117 KEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDV 176
Query: 214 WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHN 273
G+ A + + + + A ++
Sbjct: 177 VLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLL--YRAFGWEAPRFYHMP 234
Query: 274 GHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLIS 311
+ K+SK ++ + P ALR++L
Sbjct: 235 LLRNPDKTKISKRKS-HTSLDWYKAEGFLPEALRNYLCL 272
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 87
Score = 39.9 bits (93), Expect = 5e-05
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 361 AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIES 420
A F M DD NT D + +N + +
Sbjct: 15 VAPAGGEAFEARFIEAMDDDFNTPEAY-SVLFDMAREVNRLKA------------EDMAA 61
Query: 421 LRKIENEVKEVLRILGLLP 439
+ + ++++ +LGLL
Sbjct: 62 ANAMASHLRKLSAVLGLLE 80
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 41.5 bits (96), Expect = 2e-04
Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 53/295 (17%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVT-----------------YVRNFTDVDDKIIRRAN 96
H+GH R D + R L + EV +R++ D + +
Sbjct: 23 HVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 82
Query: 97 DLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG 156
G + L E L + + L + + + + +I ++ A
Sbjct: 83 FAGRAYVRLHQDPEYERLQPAIE-EVLHALERGELREEVNRILLAQMATMHALNARYDLL 141
Query: 157 DVFFA------VEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD-------------- 196
++K+ S A+
Sbjct: 142 VWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNG 201
Query: 197 ----------FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 246
F WK + P PG + SA + K + +D+
Sbjct: 202 TATYYAKDIAFQFWKMGILEGLRFRPYENPYYPG--LRTSAPEGEAYTPKAEETINVVDV 259
Query: 247 IFPHHENEIAQSCAAC---QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 298
H + + + A + ++ + V +MS G ++ ++ E
Sbjct: 260 RQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE 314
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 34.2 bits (77), Expect = 0.044
Identities = 11/103 (10%), Positives = 25/103 (24%)
Query: 210 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 269
+ G G + + + + E+ ++ + +
Sbjct: 373 EEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRP 432
Query: 270 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
MSKS GN + + R ++ A
Sbjct: 433 HEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFA 475
Score = 27.6 bits (60), Expect = 3.9
Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H+GH + D+L R+ EV + + A G +P + ++
Sbjct: 49 HMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108
Query: 114 LVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAY 152
+ + L + + ++ + + ++ AY
Sbjct: 109 KESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAY 150
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 33.7 bits (76), Expect = 0.050
Identities = 42/289 (14%), Positives = 83/289 (28%), Gaps = 51/289 (17%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H+GHA++ + +++ + R +D NP+ Y +
Sbjct: 33 HIGHAKSI-----CLNFG--------IAQDY---KGQCNLRFDDT--NPVKEDIEYVESI 74
Query: 114 LVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE----------GDVFFAVE 163
D+ L SD+ +Q+ ++IN AYV E G + +
Sbjct: 75 KNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGK 134
Query: 164 KSPNYGR---LSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPG 220
SP R + E RAG + R D A + +
Sbjct: 135 NSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQT 194
Query: 221 ---WHIECSAMSAHYLS---SKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSY-WM 271
W I H +S ++ ++ + + +
Sbjct: 195 GNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRL 254
Query: 272 HNGHVTNNNEKMSKSLGN----------FFTIRQITER-YHPLALRHFL 309
+ + + K++ + + TI + R Y ++R F
Sbjct: 255 NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 303
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 105
Score = 28.7 bits (64), Expect = 0.55
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 417 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLK--DKALKR 457
+IE L + + E+ RIL + G+ +L+ LK K KR
Sbjct: 16 IIELLLEGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKR 58
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 28.0 bits (61), Expect = 2.0
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 66 LLYRYLEHLKCEVTYVRNFTDVDD 89
++R L +L E + N T +++
Sbjct: 15 RIWRTLRYLGVETKIIPNTTPLEE 38
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 28.3 bits (62), Expect = 2.1
Identities = 30/260 (11%), Positives = 50/260 (19%), Gaps = 31/260 (11%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H G AA L YL R + + R D+ +P +
Sbjct: 16 HFGSLIAA-----LGSYL--------QARAR---QGRWLVRIEDI--DPPREVPGAAETI 57
Query: 114 LVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSG 173
L + S + ++ + + +Y Y
Sbjct: 58 LRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCR 117
Query: 174 QRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGR----PGWHIECSAMS 229
L A E + R +++
Sbjct: 118 VLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDD 177
Query: 230 AHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN 289
G DLI P Y + K+SK
Sbjct: 178 HFQ---GVTEIVRGADLIEPTVRQISLYQL--FGWKVPDYIHLPLALNPQGAKLSKQNHA 232
Query: 290 FFTIRQITERYHPLALRHFL 309
+ + L L
Sbjct: 233 PA----LPKGDPRPVLIAAL 248
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 28.5 bits (62), Expect = 2.2
Identities = 7/109 (6%), Positives = 25/109 (22%), Gaps = 6/109 (5%)
Query: 416 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLK------DKALKRAELTEEDVLQLI 469
++ + E + GL+P A + + + + L+
Sbjct: 21 GRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLV 80
Query: 470 EERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQEQE 518
+ + T + + + ++ +
Sbjct: 81 KALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGK 129
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 27.7 bits (60), Expect = 3.7
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 416 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLK--------DKALKRAELTEEDVLQ 467
+L+ + + E + + +G++P A + + + K D L +
Sbjct: 20 ALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLAGNIAIP 79
Query: 468 LIEERAAARKNKDFSKSDQIRADLTRKGIALMDM 501
+++ A K+ D + + T + I
Sbjct: 80 FVKQLTAIVKDADEDAARYVHWGATSQDILDTAC 113
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 27.1 bits (59), Expect = 4.6
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 67 LYRYLEHLKCEVTYVRNFTDVDDKII 92
L L +V RN + ++I
Sbjct: 16 LVDQLRASGHQVVIYRN--QIGAEVI 39
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 26.5 bits (58), Expect = 5.2
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 414 QLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDK-ALKRAELTEE--------- 463
QLSL +KI+ E+ E + G+ P + VL LK +LK +E+ E
Sbjct: 10 QLSLQALFQKIQPEMLESMEKQGVTPAQLF--VLASLKKHGSLKVSEIAERMEVKPSAVT 67
Query: 464 DVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMD 500
+ +E++ + + I LT +G +
Sbjct: 68 LMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 104
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 89
Score = 25.4 bits (55), Expect = 6.4
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 366 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIE 425
I++++ EF A +S +L T A+ + + L++ K+ + + L +
Sbjct: 16 IDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLL 75
Query: 426 NEVKEVLRI 434
NE+ + R+
Sbjct: 76 NELLDFSRL 84
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 26.4 bits (57), Expect = 6.6
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 66 LLYRYLEHLKCEVTYVRNFTDVDD 89
+R L L + V N D +
Sbjct: 16 REWRVLRELGVDTKIVPNDIDSSE 39
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 26.4 bits (57), Expect = 6.9
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 67 LYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97
+ + + L +RN I R D
Sbjct: 17 IAQIVGELGSYPIVIRNDEISIKGIERIDPD 47
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 26.3 bits (57), Expect = 8.6
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 406 KKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDV 465
P + E R I + ++ I+ Y E L+ + K L++ +T E+
Sbjct: 132 VDTSPDLLREIDEEVKRIITEQYEKAKAIVE-----EYKEPLKAVVKKLLEKETITCEEF 186
Query: 466 LQLIEERAAARKNK 479
+++ + K+K
Sbjct: 187 VEVFKLYGIELKDK 200
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.392
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,997,092
Number of extensions: 95468
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 42
Length of query: 537
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 447
Effective length of database: 1,171,896
Effective search space: 523837512
Effective search space used: 523837512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)