BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009331
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 140/310 (45%), Gaps = 44/310 (14%)
Query: 13 KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY 72
K K AK D TPL R G +V ++ + + L +G T L++AA
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL------ATTAGHTPLHIAARE 123
Query: 73 GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALP--------- 121
G+V+ V ++ + + G+ H+AAK G + V ++L+E A P
Sbjct: 124 GHVETVLALLEKEASQ--ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181
Query: 122 --------------ELLMTFDSS-------NTTALHTASSQGHVEVVKFLLEKGSTLATI 160
+LL+ S T LH A+ Q VEV + LL+ G + A
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANA 240
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
G T LH AA+ GH E+V LLSK+ L N K G T LH+ + + + D L+K
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVADVLIK 299
Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS 280
V+++ G + LH+A+ G +++V+ LL + D K + L A + GH+
Sbjct: 300 -HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHT 357
Query: 281 EIGVILKEHG 290
+I +L ++G
Sbjct: 358 DIVTLLLKNG 367
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)
Query: 24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
+TPL R G E+ ++ + + + + +T L+ AA G+ +MV+ ++
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKA------KDDQTPLHCAARIGHTNMVKLLLE 101
Query: 84 YHDTSLAGIKARNGYDAFHIAAKQGCLE-VLKILMEALPELLMTFDSSNTTALHTASSQG 142
+ + + G+ HIAA++G +E VL +L + + MT T LH A+ G
Sbjct: 102 --NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT--KKGFTPLHVAAKYG 157
Query: 143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
V V + LLE+ + A NG T LH A + +L+IVK LL + G G T
Sbjct: 158 KVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTP 215
Query: 203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAV 262
LH+A K +E+ L++ N +G + LH+A ++G ++V LL+ + +
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNL 273
Query: 263 INKSRETALDTAEKTGHSEIGVILKEHGV 291
NKS T L + GH + +L +HGV
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 8/195 (4%)
Query: 64 TALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
T L+VA+ G++ +V+ ++ R +++ +K H+AA+ G EV K L++ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVET---PLHMAARAGHTEVAKYLLQNKAK 72
Query: 123 LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK 182
+ + T LH A+ GH +VK LLE + +A + G T LH AAR GH+E V
Sbjct: 73 V-NAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVL 130
Query: 183 ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR 242
ALL KE KKG T LH+A K + V EL+ N G + LH+A
Sbjct: 131 ALLEKEASQACMT-KKGFTPLHVAAKYGKVR-VAELLLERDAHPNAAGKNGLTPLHVAVH 188
Query: 243 KGRVQIVQKLLNING 257
+ IV+ LL G
Sbjct: 189 HNNLDIVKLLLPRGG 203
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 12/175 (6%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL + G E+V ++S + L N+SG T L++ A+ G+V + +I++
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLG------NKSGLTPLHLVAQEGHVPVADVLIKH 300
Query: 85 HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV 144
+ R GY H+A+ G ++++K L++ ++ + LH A+ QGH
Sbjct: 301 --GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHT 357
Query: 145 EVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL--LSKEPGIVLRNDK 197
++V LL+ G++ ++ S+G T L A R G++ + L ++ E VL +DK
Sbjct: 358 DIVTLLLKNGASPNEVS-SDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 90.9 bits (224), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
NG H+AA+ G LEV+K+L+EA ++ D + T LH A+ GH+EVVK LLE G+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 156 TLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV 215
+ + NG+T LH AARNGHLE+VK LL + + DK G+T LH+A + +E+V
Sbjct: 60 DVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117
Query: 216 DELVK 220
L++
Sbjct: 118 KLLLE 122
Score = 79.0 bits (193), Expect = 6e-15, Method: Composition-based stats.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
NG+T LH AARNGHLE+VK LL + + DK G+T LH+A + +E+V L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIG 283
+N D G + LH+A R G +++V+ LL G D +K+ T L A + GH E+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 284 VILKEHG 290
+L E G
Sbjct: 118 KLLLEAG 124
Score = 68.6 bits (166), Expect = 9e-12, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL R G +E+V ++ + D+ ++ ++G T L++AA G++++V+ ++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD------KNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 85 HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV 144
A K +NG H+AA+ G LEV+K+L+EA ++ D + T LH A+ GH+
Sbjct: 58 GADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHL 114
Query: 145 EVVKFLLEKGS 155
EVVK LLE G+
Sbjct: 115 EVVKLLLEAGA 125
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
K TPL R G +E+V ++ + D+ ++ ++G T L++AA G++++V+
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD------KNGRTPLHLAARNGHLEVVKL 86
Query: 81 MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEA 119
++ A K +NG H+AA+ G LEV+K+L+EA
Sbjct: 87 LLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEA 123
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 14/220 (6%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIK----ARNGYDAFHIAAKQGCLEVLK 114
+Q+ + L+ AAE G+VD+ +++ AG + + AA+ LE +K
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQ------AGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
L++A L+ D+ +T LH A+ +GH EVV++LL G G T + A
Sbjct: 62 YLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
H+++VK LLSK I +R D + LH A +++ E++ ++ V+ G+
Sbjct: 121 YKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGD 178
Query: 235 SALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTA 274
S LHIA R+ R V L+ + D + NK ET L A
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDS-DVTLKNKEGETPLQCA 217
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 83/158 (52%), Gaps = 13/158 (8%)
Query: 104 AAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161
AA+ G + +K L+E A P DS T LH A+ GH E+VK LL KG+
Sbjct: 11 AAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAK 66
Query: 162 RSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
S+G+T LH AA NGH EIVK LLSK +P D G+T LH A + E+V +L+
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIV-KLL 122
Query: 220 KVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
+ N D+ G + L +A G +IV KLL G
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIV-KLLEKQG 159
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRN 195
A+ G+ + VK LLE G+ + S+G+T LH AA NGH EIVK LLSK +P
Sbjct: 11 AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---K 66
Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
D G+T LH A + E+V +L+ + N D+ G + LH A G +IV KLL
Sbjct: 67 DSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV-KLLLS 124
Query: 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
G D + T LD A + G+ EI +L++ G
Sbjct: 125 KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 15/162 (9%)
Query: 31 VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLA 90
G+ + V D++ + D + + G T L+ AAE G+ ++V+ ++ +
Sbjct: 12 AENGNKDRVKDLLENGADP------NASDSDGRTPLHYAAENGHKEIVKLLLSK--GADP 63
Query: 91 GIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVK 148
K +G H AA+ G E++K+L+ A P DS T LH A+ GH E+VK
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN---AKDSDGRTPLHYAAENGHKEIVK 120
Query: 149 FLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
LL KG+ T + S+G+T L A +G+ EIVK LL K+ G
Sbjct: 121 LLLSKGADPNT-SDSDGRTPLDLAREHGNEEIVK-LLEKQGG 160
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
NG H+AA+ G LEV+K+L+EA ++ D + T LH A+ GH+EVVK LLE G+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 156 TLATIARSNGKTALHSAARNGHLEIVKALL 185
+ + NG+T LH AARNGHLE+VK LL
Sbjct: 60 DVNAKDK-NGRTPLHLAARNGHLEVVKLLL 88
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
T LH A+ GH+EVVK LLE G+ + + NG+T LH AARNGHLE+VK LL +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVK 220
+ DK G+T LH+A + +E+V L++
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
NG+T LH AARNGHLE+VK LL + + DK G+T LH+A + +E+V L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA-G 58
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLL 253
+N D G + LH+A R G +++V+ LL
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL 120
+G T L++AA G++++V+ ++ A K +NG H+AA+ G LEV+K+L+EA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 121 PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
++ D + T LH A+ GH+EVVK LLE G+
Sbjct: 59 ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+T LH+A + +E+V L++ +N D G + LH+A R G +++V+ LL G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GA 59
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D +K+ T L A + GH E+ +L E G
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
K TPL R G +E+V ++ + D+ ++ ++G T L++AA G++++V+
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD------KNGRTPLHLAARNGHLEVVKL 86
Query: 81 MI 82
++
Sbjct: 87 LL 88
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
L AA G D VR I + + K ++GY H+AA++G LE++++L++A + +
Sbjct: 6 LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 62
Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
D T LH A+ +GH+E+V+ LL+ G+ + +G T LH AAR GHLEIV+ LL
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 186 SKEPGIVLRNDKKGQTALHMAVK 208
K V DK G+T +A++
Sbjct: 122 -KAGADVNAQDKFGKTPFDLAIR 143
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
A+ G + V+ L+ G+ + +G T LH AAR GHLEIV+ LL K V DK
Sbjct: 9 AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDK 66
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
G T LH+A + +E+V+ L+K +N D G + LH+A R+G ++IV+ LL G
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-G 124
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILK 287
D +K +T D A + GH +I +L+
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
L AAR G + V+ L++ + + DK G T LH+A + +E+V+ L+K +N
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNA 63
Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
D G + LH+A R+G ++IV+ LL G D +K T L A + GH EI +L +
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 289 HG 290
G
Sbjct: 123 AG 124
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N D G + LH+A R+G ++IV+ LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D +K T L A + GH EI +L + G
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 5/151 (3%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
L AA G D VR I + + K ++GY H+AA++G LE++++L++A + +
Sbjct: 18 LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 74
Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
D T LH A+ +GH+E+V+ LL+ G+ + +G T LH AAR GHLEIV+ LL
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
K V DK G+TA +++ + +L +
Sbjct: 134 -KAGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
A+ G + V+ L+ G+ + +G T LH AAR GHLEIV+ LL K V DK
Sbjct: 21 AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDK 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
G T LH+A + +E+V+ L+K +N D G + LH+A R+G ++IV+ LL G
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-G 136
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILK 287
D +K +TA D + G+ ++ IL+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ + + DK G T LH+A + +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N D G + LH+A R+G ++IV+ LL G D +K T L
Sbjct: 61 EIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLH 118
Query: 273 TAEKTGHSEI 282
A + GH EI
Sbjct: 119 LAAREGHLEI 128
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 9/156 (5%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + +K L+E ++ + DS T LH A+ GH EVVK LL +G+ S
Sbjct: 11 AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDS 68
Query: 164 NGKTALHSAARNGHLEIVKALLSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
+GKT LH AA NGH E+VK LLS+ +P D G+T LH+A + E+V +L+
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVV-KLLLS 124
Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
+ N D+ G + L +A G ++V KLL G
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVV-KLLEKQG 159
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRN 195
A+ G+ + VK LLE G+ + + S+GKT LH AA NGH E+VK LLS+ +P
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---K 66
Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255
D G+T LH+A + E+V +L+ + N D+ G + LH+A G ++V KLL
Sbjct: 67 DSDGKTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV-KLLLS 124
Query: 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
G D + T LD A + G+ E+ +L++ G
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 15/162 (9%)
Query: 31 VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLA 90
G+ + V D++ + D+ + + G+T L++AAE G+ ++V+ ++ +
Sbjct: 12 AENGNKDRVKDLLENGADV------NASDSDGKTPLHLAAENGHKEVVKLLLSQ--GADP 63
Query: 91 GIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVK 148
K +G H+AA+ G EV+K+L+ A P DS T LH A+ GH EVVK
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENGHKEVVK 120
Query: 149 FLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
LL +G+ T + S+G+T L A +G+ E+VK LL K+ G
Sbjct: 121 LLLSQGADPNT-SDSDGRTPLDLAREHGNEEVVK-LLEKQGG 160
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
A+ G+ + VK L+E G+ + + S+G+T LH AA+ GH EIVK L+SK + + D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
G+T LH A K E+V +L+ + +N D+ G + LH A ++G +IV KLL G
Sbjct: 69 DGRTPLHYAAKEGHKEIV-KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV-KLLISKG 126
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D + T LD A + G+ EI +L++ G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 15/160 (9%)
Query: 33 TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI 92
G+ + V D+I + D+ + + G T L+ AA+ G+ ++V+ +I + A +
Sbjct: 14 NGNKDRVKDLIENGADV------NASDSDGRTPLHYAAKEGHKEIVKLLI----SKGADV 63
Query: 93 KARN--GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
A++ G H AAK+G E++K+L+ ++ DS T LH A+ +GH E+VK L
Sbjct: 64 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
+ KG+ + T + S+G+T L A +G+ EIVK LL K+ G
Sbjct: 123 ISKGADVNT-SDSDGRTPLDLAREHGNEEIVK-LLEKQGG 160
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
L AA G D VR I + + K ++GY H+AA++G LE++++L++A ++
Sbjct: 6 LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
D T LH A+ +GH+E+V+ LL+ G+ + + +G T LH AAR GHLEIV+ LL
Sbjct: 64 K-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL 121
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
K V DK G+T +A+ + ++ + L K
Sbjct: 122 -KAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 4/154 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
L A+ G + V+ L+ G+ + + +G T LH AAR GHLEIV+ LL K V
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL-KAGADVNA 63
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
DK G T LH+A + +E+V+ L+K +N D G + LH+A R+G ++IV+ LL
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
G D +K +T D A G+ +I +L++
Sbjct: 123 A-GADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
L AAR G + V+ L++ + + DK G T LH+A + +E+V+ L+K +N
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNA 63
Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
D G + LH+A R+G ++IV+ LL G D +K T L A + GH EI +L +
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 289 HG 290
G
Sbjct: 123 AG 124
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N D G + LH+A R+G ++IV+ LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D +K T L A + GH EI +L + G
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 9/158 (5%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR ++ + A + AR+ G+ H+AA G LE++++L++ ++
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
DS T LH A+ +GH+E+V+ LL+ G+ + + S+G T LH AA+ GHLEIV+
Sbjct: 74 -NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
LL K V DK G+TA +++ + +L + L K+
Sbjct: 132 LL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ + R D G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N D+ G + LH+A R+G ++IV+ LL NG D + T L
Sbjct: 61 EIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A K GH EI +L ++G
Sbjct: 119 LAAKRGHLEIVEVLLKNG 136
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N D G + LH+A G ++IV+ LL NG
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK-NGA 71
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKS 296
D + T L A + GH EI +L ++G S
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
A+ G+ + VK L+E G+ + + S+G+T LH AA NGH E+VK L+SK + + D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
G+T LH A + E+V +L+ + +N D+ G + LH A G ++V KLL G
Sbjct: 69 DGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVV-KLLISKG 126
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D + T LD A + G+ E+ +L++ G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 33 TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI 92
G+ + V D+I + D+ + + G T L+ AAE G+ ++V+ +I + A +
Sbjct: 14 NGNKDRVKDLIENGADV------NASDSDGRTPLHHAAENGHKEVVKLLI----SKGADV 63
Query: 93 KARN--GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
A++ G H AA+ G EV+K+L+ ++ DS T LH A+ GH EVVK L
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
+ KG+ + T + S+G+T L A +G+ E+VK LL K+ G
Sbjct: 123 ISKGADVNT-SDSDGRTPLDLAREHGNEEVVK-LLEKQGG 160
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ T D+ T LH A+S GH+E+V+ LL+ G+ + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDL 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
G T LH AA GHLEIV+ LL K V D G T LH+A K +E+V+ L+K
Sbjct: 79 TGITPLHLAAATGHLEIVEVLL-KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKL 252
+N D G +A I+ G + + L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
A+ G + V+ L+ G+ + ++G T LH AA NGHLEIV+ LL K V +D
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDL 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
G T LH+A +E+V+ L+K +N D G++ LH+A + G ++IV+ LL +G
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK-HG 136
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILK 287
D +K +TA D + G+ ++ IL+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
+GY H+AA G LE++++L++ ++ + D + T LH A++ GH+E+V+ LL+ G
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLKHG 103
Query: 155 STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL 214
+ + ++G T LH AA+ GHLEIV+ LL K V DK G+TA +++ + +L
Sbjct: 104 ADVNAY-DNDGHTPLHLAAKYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 215 VD 216
+
Sbjct: 162 AE 163
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ V D G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNATDNDGYTPLHLAASNGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N D G + LH+A G ++IV+ LL +G D + T L
Sbjct: 61 EIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A K GH EI +L +HG
Sbjct: 119 LAAKYGHLEIVEVLLKHG 136
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL TG +E+V ++ D+ + + G T L++AA+YG++++V ++++
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADV------NAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 85 HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
A + A++ G AF I+ G ++ +IL
Sbjct: 136 G----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D++ TT LH A+ GH+E+V+ LL+ G+ + +
Sbjct: 21 AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDV 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
G T LH AA GHLEIV+ LL K V D G T LH+A K +E+V+ L+K
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLL-KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
+N D G +A I+ G +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G H+AA G LE++++L++ ++ + D T LH A+ GH+E+V+ LL+ G+
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
+ + S+G T LH AA+ G+LEIV+ LL K V DK G+TA +++ + +L +
Sbjct: 106 VNAM-DSDGMTPLHLAAKWGYLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 217 ELVKV 221
L K+
Sbjct: 164 ILQKL 168
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ V D G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGRKLLEAARAGQDDEVRILMANGAD-VNAADNTGTTPLHLAAYSGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K ++ D G + LH+A G ++IV+ LL NG D ++ T L
Sbjct: 61 EIVEVLLK-HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A K G+ EI +L +HG
Sbjct: 119 LAAKWGYLEIVEVLLKHG 136
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL +G +E+V ++ D++ ++ G T L++AA +G++++V +++
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDASDVF------GYTPLHLAAYWGHLEIVEVLLK- 101
Query: 85 HDTSLAGIKA--RNGYDAFHIAAKQGCLEVLKILME 118
+ A + A +G H+AAK G LE++++L++
Sbjct: 102 ---NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G+ H+AA G LE++++L++ ++ +D+ +T LH A+ GH+E+V+ LL+ G+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
+ NG T LH AA GHLEIV+ LL K V DK G+TA +++ + +L +
Sbjct: 106 V-NAKDDNGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISINNGNEDLAE 163
Query: 217 ELVKV 221
L K+
Sbjct: 164 ILQKL 168
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ + D G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAA-DVVGWTPLHLAAYWGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N D G++ LH+A G ++IV+ LL NG D + + T L
Sbjct: 61 EIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A GH EI +L ++G
Sbjct: 119 LAANRGHLEIVEVLLKYG 136
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL G +E+V ++ + D+ + L G T L++AA +G++++V +++
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTL------GSTPLHLAAHFGHLEIVEVLLK- 101
Query: 85 HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV 144
+ + K NG H+AA +G LE++++L++ + + D TA + + G+
Sbjct: 102 -NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISINNGNE 159
Query: 145 EVVKFL 150
++ + L
Sbjct: 160 DLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA G + ++ILM ++ T D + T LH A++ G +E+V+ LL+ G+ + + S
Sbjct: 13 AAAAGQDDEVRILMANGADVNAT-DDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDS 70
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
G T LH AA +GHLEIV+ LL K V D+ G T LH+A +E+V+ L+K
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKL 252
+N DA G +A I+ +G+ + + L
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Query: 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
NG H+AA G LE++++L++ ++ + DS+ T LH A+ GH+E+V+ LL+ G+
Sbjct: 38 NGLTPLHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 156 TLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV-KGQ 210
+ R+ G T LH AA +G LEIV+ LL K V D G TA +++ +GQ
Sbjct: 97 DVNAYDRA-GWTPLHLAALSGQLEIVEVLL-KHGADVNAQDALGLTAFDISINQGQ 150
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPV 224
GK L +AA G + V+ L++ V D G T LH+A +E+V+ L+K
Sbjct: 7 GKKLLEAAAA-GQDDEVRILMANGAD-VNATDDNGLTPLHLAAANGQLEIVEVLLK-NGA 63
Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 284
+N D+ G + LH+A G ++IV+ LL +G D +++ T L A +G EI
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 285 ILKEHG 290
+L +HG
Sbjct: 123 VLLKHG 128
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL G +E+V ++ + D+ + + +G T L++AA G++++V ++++
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADV------NASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 85 HDTSLAGIKA--RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
A + A R G+ H+AA G LE++++L++ + + D+ TA + +QG
Sbjct: 95 G----ADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD-VNAQDALGLTAFDISINQG 149
Query: 143 HVEVVKFL 150
++ + L
Sbjct: 150 QEDLAEIL 157
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D S T LH A+ +GH+E+V+ LL+ G+ + A
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADK 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
G T LH AA GHLEIV+ LL K V D G T LH+A +E+V+ L+K
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLL-KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY-G 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
+N D G +A I+ G +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
A+ G + V+ L+ G+ + +GKT LH AA GHLEIV+ LL K V DK
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADK 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
G T LH+A +E+V+ L+K +N D G + LH+A G ++IV+ LL G
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY-G 136
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILKE 288
D +K +TA D + G+ ++ IL++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 9/158 (5%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR ++ + A + A + G H+AA +G LE++++L++ +
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD- 72
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
+ D T LH A+ GH+E+V+ LL+ G+ + + G T LH AA GHLEIV+
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
LL K V DK G+TA +++ + +L + L K+
Sbjct: 132 LL-KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ + +D G+T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAEDDS-GKTPLHLAAIKGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N D G++ LH+A G ++IV+ LL NG D + T L
Sbjct: 61 EIVEVLLK-HGADVNAADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A GH EI +L ++G
Sbjct: 119 LAADAGHLEIVEVLLKYG 136
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL G +E+V ++ D+ + ++ G+T L++AA YG++++V +++
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHGADV------NAADKMGDTPLHLAALYGHLEIVEVLLK- 101
Query: 85 HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME 118
+ A + A + G+ H+AA G LE++++L++
Sbjct: 102 ---NGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D +T LH A+ GH E+V+ LL+ G+ + +
Sbjct: 21 AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDT 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
+G T LH AA NGHLEIV+ LL K V D G T LH+A +E+V+ L+K
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
+N D G +A I+ G +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
+ G T L++AA G+ ++V ++++ A + AR+ G+ H+AA G LE++++L
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHG----ADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 117 MEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG 176
++ + + D+ T LH A+ +GH+E+V+ LL+ G+ + + GKTA + NG
Sbjct: 100 LKYGAD-VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNG 157
Query: 177 HLEIVKAL 184
+ ++ + L
Sbjct: 158 NEDLAEIL 165
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ + +D+ G T LH+A
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQ-GSTPLHLAAWIGHP 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N D G + LH+A G ++IV+ LL G D + T L
Sbjct: 61 EIVEVLLK-HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A GH EI +L +HG
Sbjct: 119 LAADRGHLEIVEVLLKHG 136
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G+ H+AAK G LE++++L++ + + +D+ T LH A+ GH+E+V+ LL+ G+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
+ G T LH AA +GHLEIV+ LL K V DK G+TA +++ + +L +
Sbjct: 106 V-NAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 217 ELVKV 221
L K+
Sbjct: 164 ILQKL 168
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ T D T LH A+ GH+E+V+ LL+ G+ + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAT-DWLGHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDN 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
G T LH AA NGHLEIV+ LL K V D +G T LH+A +E+V+ L+K
Sbjct: 79 YGATPLHLAADNGHLEIVEVLL-KHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG- 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
+N D G +A I+ G +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 72/125 (57%), Gaps = 8/125 (6%)
Query: 62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA--FHIAAKQGCLEVLKILMEA 119
G T L++AA+ G++++V +++Y A + A + Y A H+AA G LE++++L++
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYG----ADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE 179
++ D T LH A+ GH+E+V+ LL+ G+ + + GKTA + NG+ +
Sbjct: 103 GADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF-GKTAFDISIDNGNED 160
Query: 180 IVKAL 184
+ + L
Sbjct: 161 LAEIL 165
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N D G++ LH+A + G ++IV+ LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY-GA 71
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D + T L A GH EI +L +HG
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D+S T LH A+ GH+E+V+ LL+ G+ + + +
Sbjct: 21 AARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
G T L AA GHLEIV+ LL K V ND +G T LH+A +E+V+ L+K
Sbjct: 80 -GMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
+N D G +A I+ G +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 9/158 (5%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR ++ + A + A + G+ H+AA G LE++++L++ +
Sbjct: 18 LLEAARAGRDDEVRILM----ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD- 72
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
+ D + T L A+ GH+E+V+ LL+ G+ + G T LH AA GHLEIV+
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
LL K V DK G+TA +++ + +L + L K+
Sbjct: 132 LL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ + D G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N VD G + L +A G ++IV+ LL NG D + T L
Sbjct: 61 EIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A GH EI +L ++G
Sbjct: 119 LAAMFGHLEIVEVLLKNG 136
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL+ G +E+V ++ + D+ +M G T L++AA +G++++V +++
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADVNANDM------EGHTPLHLAAMFGHLEIVEVLLK- 134
Query: 85 HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
+ A + A++ G AF I+ G ++ +IL
Sbjct: 135 ---NGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 9/158 (5%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR ++ + A + A + G+ H+AA G LE++++L++ ++
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
DS T LH A+ +GH+EVV+ LL+ G+ + NG T LH AA GHLEIV+
Sbjct: 74 -NADDSLGVTPLHLAADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
LL K V DK G+TA +++ + +L + L K+
Sbjct: 132 LL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ V +D G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNASDHVGWTPLHLAAYFGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N D+ G + LH+A +G +++V+ LL NG D + + T L
Sbjct: 61 EIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A GH EI +L +HG
Sbjct: 119 LAANIGHLEIVEVLLKHG 136
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ T D+S T LH A++ GH+E+V+ LL+ G+ + I
Sbjct: 21 AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
G T LH AA GHLEIV+ LL K V D G T LH+A +E+V+ L+K
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
+N D G +A I+ G +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR ++ + A + A + G H+AA G LE++++L++ +
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD- 72
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
+ D +T LH A+ GH+E+V+ LL+ G+ + + + G T LH AA GHLEIV+
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
LL K V DK G+TA +++ + +L + L K+
Sbjct: 132 LL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ V D G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N +D G++ LH+A G ++IV+ LL +G D ++ +T L
Sbjct: 61 EIVEVLLK-HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A GH EI +L +HG
Sbjct: 119 LAAIMGHLEIVEVLLKHG 136
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
A+ G + V+ L+ G+ + + G T LH AAR GHLEIV+ LL K V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNALDF 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING 257
G T LH+A K +E+V+ L+K +N D G++ LH+A G ++IV+ LL G
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVEVLLKY-G 136
Query: 258 VDKAVINKSRETALDTAEKTGHSEIGVILK 287
D +K +TA D + G+ ++ IL+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 9/153 (5%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR ++ + A + A + Y H+AA+ G LE++++L++ ++
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
D S +T LH A+ +GH+E+V+ LL+ G+ + + G T LH AA GHLEIV+
Sbjct: 74 -NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
LL K V DK G+TA +++ + +L +
Sbjct: 132 LL-KYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ V D G T LH+A + +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAARVGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N +D G++ LH+A ++G ++IV+ LL G D + T L
Sbjct: 61 EIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A TGH EI +L ++G
Sbjct: 119 LAADTGHLEIVEVLLKYG 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 12/97 (12%)
Query: 24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
DTPL R G +E+V ++ + D+ + ++ SG T L++AA+ G++++V +++
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADV------NALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 84 YHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME 118
Y A + A + G H+AA G LE++++L++
Sbjct: 102 YG----ADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ T D+S T LH A++ GH+E+V+ LL+ G+ + I
Sbjct: 21 AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
G T LH AA GHLEIV+ LL K V D G T LH+A +E+V+ L+K
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR---VQIVQKL 252
+N D G +A I+ G +I+QKL
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR ++ + A + A + G H+AA G LE++++L++ +
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD- 72
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
+ D +T LH A+ GH+E+V+ LL+ G+ + + + G T LH AA GHLEIV+
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
LL K V DK G+TA +++ + +L + L K+
Sbjct: 132 LL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ V D G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N +D G++ LH+A G ++IV+ LL +G D ++ +T L
Sbjct: 61 EIVEVLLK-HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A GH EI +L +HG
Sbjct: 119 LAAIMGHLEIVEVLLKHG 136
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 73 GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME-ALPELLMTFDSSN 131
G +D ++E I D SLA ++ A H A G E+++ L++ +P + D +
Sbjct: 17 GKLDELKERI-LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAG 73
Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
+ LH A+S G E+VK LL KG+ + + NG T LH AA EI LL
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
+ D TA+H A ++++V L+ N+ D +GN+ LH+A + RV+ K
Sbjct: 133 DAK-DHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTPLHLACDEERVEEA-K 189
Query: 252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
L G + NK +T L A K G +G+ILK
Sbjct: 190 FLVTQGASIYIENKEEKTPLQVA-KGG---LGLILK 221
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
A G L+ LK + A L D + TALH A S GH E+V+FLL+ G +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK--VE 222
G + LH AA G EIVKALL K + N + G T LH A E+ L++
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 223 PVIINMVDAKGNSALHIATRKGRVQIVQKLL 253
P + DA +A+H A KG +++V LL
Sbjct: 132 PDAKDHYDA---TAMHRAAAKGNLKMVHILL 159
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 55 LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA--FHIAAKQGCLEV 112
++ +NQ+G T L+ AA ++ ++ A A++ YDA H AA +G L++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLE----GGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 113 LKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL 157
+ IL+ + D+ T LH A + VE KFL+ +G+++
Sbjct: 155 VHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 12/216 (5%)
Query: 73 GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME-ALPELLMTFDSSN 131
G +D ++E I D SLA ++ A H A G E+++ L++ +P + D +
Sbjct: 17 GKLDELKERI-LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAG 73
Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
+ LH A+S G E+VK LL KG+ + + NG T LH AA EI LL
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
+ D TA+H A ++++V L+ + N+ D +GN+ LH+A + RV+ K
Sbjct: 133 DAK-DHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEA-K 189
Query: 252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
L G + NK +T L A K G +G+ILK
Sbjct: 190 FLVTQGASIYIENKEEKTPLQVA-KGG---LGLILK 221
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
A G L+ LK + A L D + TALH A S GH E+V+FLL+ G +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK--VE 222
G + LH AA G EIVKALL K + N + G T LH A E+ L++
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 223 PVIINMVDAKGNSALHIATRKGRVQIVQKLL 253
P + DA +A+H A KG +++V LL
Sbjct: 132 PDAKDHYDA---TAMHRAAAKGNLKMVHILL 159
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 55 LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA--FHIAAKQGCLEV 112
++ +NQ+G T L+ AA ++ ++ A A++ YDA H AA +G L++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLE----GGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 113 LKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL 157
+ IL+ + D+ T LH A + VE KFL+ +G+++
Sbjct: 155 VHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL--SKEP 189
++ LH A+ G +++ LL+ G+ A ++ LH A + GH ++VK LL + +P
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 190 GIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV 249
+ D G T L A G ELV L++ IN + KGN+ALH A + V +V
Sbjct: 146 N---KKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVV 201
Query: 250 QKLLNINGVDKAVINKSRETALDTAEKT 277
+ LL ++G V+NK + TA+D AE+
Sbjct: 202 ELLL-LHGASVQVLNKRQRTAVDCAEQN 228
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA--FHIAAKQGCLEVLKIL 116
+Q G + L+VAA +G D++ ++++ A ARN A H+A +QG +V+K L
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHG----ANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
++ A P D S T L A S GH E+V LL+ G+++ + + G TALH A
Sbjct: 139 LDSNAKPN---KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVI 194
Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD 230
H+ +V+ LL + + N K+ +TA+ A + I EL++V P + +D
Sbjct: 195 EKHVFVVELLLLHGASVQVLN-KRQRTAVDCAEQNSKIM---ELLQVVPSCVASLD 246
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 92 IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
+ +++G H+AA G +++ +L++ ++ LH A QGH +VVK LL
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
+ + S G T L A GH E+V LL I N+ KG TALH AV +
Sbjct: 140 DSNAKPNKKDLS-GNTPLIYACSGGHHELVALLLQHGASINASNN-KGNTALHEAVIEKH 197
Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGRV 246
+ +V EL+ + + +++ + +A+ A + ++
Sbjct: 198 VFVV-ELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
+N+ G+S LH+A GR ++ LL +G + N + L A + GH ++
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQV 134
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G H+ G LE++++L++ ++ + D S T LH A+ +GH+E+V+ LL+ G+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
+ + G T LH AA +GHLEIV+ LL K V DK G+TA +++ + +L +
Sbjct: 106 VNAMDYQ-GYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 217 ELVKV 221
L K+
Sbjct: 164 ILQKL 168
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ V ND G T LH+ V +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNANDWFGITPLHLVVNNGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+++ L+K +N D G + LH+A +G ++IV+ LL G D ++ T L
Sbjct: 61 EIIEVLLKY-AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY-GADVNAMDYQGYTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A + GH EI +L ++G
Sbjct: 119 LAAEDGHLEIVEVLLKYG 136
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 56/96 (58%), Gaps = 12/96 (12%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL +V G +E++ ++ D+ + ++SG T L++AA G++++V +++Y
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADV------NASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 85 HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME 118
A + A + GY H+AA+ G LE++++L++
Sbjct: 103 G----ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL G +E+V +++ YG ++ M+ G T L++AAE G++++V +++Y
Sbjct: 82 TPLHLAAYRGHLEIV-EVLLKYG-----ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 85 HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
A + A++ G AF I+ G ++ +IL
Sbjct: 136 G----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 22/290 (7%)
Query: 19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMV 78
A D+ L V+ V+LV ++ ++ +E + G T L+ A + D+V
Sbjct: 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIV 75
Query: 79 REMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138
++R+ + ++ +NG F +AA G +++LK+ + ++ D TA A
Sbjct: 76 ELLLRHGADPV--LRKKNGATPFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEA 132
Query: 139 SSQGHVEVVKFLLEKGSTL---------ATIARSNGKTALHSAARNGHLEIVKALLSKEP 189
+ G V+ +KFL ++G+ + R G TAL AA GH+E++K LL +
Sbjct: 133 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192
Query: 190 GIVLRNDKKGQTALHMAV---KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV 246
V D G+ AL A+ +E + L+ +N+ +G + L +A K +
Sbjct: 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252
Query: 247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG--VPCG 294
+VQ+LL ++ + +TAL A + +I +L + G CG
Sbjct: 253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 302
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 17/202 (8%)
Query: 18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDM 77
L K TP GSV+L+ +S D+ ++ + G TA AA YG V
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADV------NECDFYGFTAFMEAAVYGKVKA 140
Query: 78 VREM--------IRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDS 129
++ + +R + G A AA++G +EVLKIL++ + + D+
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 130 SNTTALHTA---SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
AL A S VE + LL + GKT L A HL +V+ LL
Sbjct: 201 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260
Query: 187 KEPGIVLRNDKKGQTALHMAVK 208
+E + D G+TAL +AV+
Sbjct: 261 QEHIEINDTDSDGKTALLLAVE 282
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 22/290 (7%)
Query: 19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMV 78
A D+ L V+ V+LV ++ ++ +E + G T L+ A + D+V
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIV 55
Query: 79 REMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138
++R+ + ++ +NG F +AA G +++LK+ + ++ D TA A
Sbjct: 56 ELLLRHGADPV--LRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEA 112
Query: 139 SSQGHVEVVKFLLEKGSTL---------ATIARSNGKTALHSAARNGHLEIVKALLSKEP 189
+ G V+ +KFL ++G+ + R G TAL AA GH+E++K LL +
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
Query: 190 GIVLRNDKKGQTALHMAV---KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV 246
V D G+ AL A+ +E + L+ +N+ +G + L +A K +
Sbjct: 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232
Query: 247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP--CG 294
+VQ+LL ++ + +TAL A + +I +L + G CG
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 17/202 (8%)
Query: 18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDM 77
L K TP GSV+L+ +S D+ ++ + G TA AA YG V
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADV------NECDFYGFTAFMEAAVYGKVKA 120
Query: 78 VREM--------IRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDS 129
++ + +R + G A AA++G +EVLKIL++ + + D+
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 130 SNTTALHTA---SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
AL A S VE + LL + GKT L A HL +V+ LL
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
Query: 187 KEPGIVLRNDKKGQTALHMAVK 208
+E + D G+TAL +AV+
Sbjct: 241 QEHIEINDTDSDGKTALLLAVE 262
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 96 NGYDAF-----HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
N YD + H+AA G LE++++L+ ++ D++ TT LH A+S GH+E+V+ L
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVL 87
Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
L+ G+ + + G T L+ AA GHLEIV+ LL K V DK G+TA +++
Sbjct: 88 LKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLL-KHGADVNAQDKFGKTAFDISI 142
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 178 LEIVKALLSKEPGIVLRN-------DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD 230
LE +A E I++ N D G+T LHMA +E+V+ L++ +N VD
Sbjct: 7 LEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVD 65
Query: 231 AKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
G + LH+A G ++IV+ LL G D + + T L A GH EI +L +HG
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKY-GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ N D G + LH+A G ++IV+ LL NG
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGA 59
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D ++ + T L A GH EI +L ++G
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 125 MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS-NGKTALHSAARNGHLEIVKA 183
M T LH A+ GH E VK LL KG+ + ARS +G T LH AA+NGH EIVK
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN--ARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG 233
LL+K + R+ K G T H+A K E I+ ++DAKG
Sbjct: 61 LLAKGADVNARS-KDGNTPEHLAKKNGHHE-----------IVKLLDAKG 98
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
+G T LH+AA+NGH E VK LLSK + R+ K G T LH+A K E+V +L+ +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 224 VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD 259
+N GN+ H+A + G +IV KLL+ G D
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGAD 100
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
+++G H AAK G E +K L+ ++ NT LH A+ GH E+VK LL K
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTP-LHLAAKNGHAEIVKLLLAK 64
Query: 154 GSTLATIARS-NGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
G+ + ARS +G T H A +NGH EIVK L +K + R
Sbjct: 65 GADVN--ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKILM 117
+ G T L+ AA+ G+ + V++++ + A + AR +G H+AAK G E++K+L+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLL----SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 118 EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKT 167
++ NT H A GH E+VK L KG+ + ARS G +
Sbjct: 63 AKGADVNARSKDGNTPE-HLAKKNGHHEIVKLLDAKGADVN--ARSWGSS 109
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 197 KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256
K G T LH A K E V +L+ + +N GN+ LH+A + G +IV KLL
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIV-KLLLAK 64
Query: 257 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
G D +K T A+K GH EI +L G
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 94/215 (43%), Gaps = 39/215 (18%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
A G LE LK + A L D + TALH A S GH E+V+FLL+ G +
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRN----------------------------- 195
G + LH AA G EIVKALL K + N
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 196 ---DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
D TA+H A +++++ L+ + N+ D +GN+ LH+A + RV+ KL
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERVEEA-KL 190
Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
L G + NK +T L A K G +G+ILK
Sbjct: 191 LVSQGASIYIENKEEKTPLQVA-KGG---LGLILK 221
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 94/215 (43%), Gaps = 39/215 (18%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
A G LE LK + A L D + TALH A S GH E+V+FLL+ G +
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 73
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRN----------------------------- 195
G + LH AA G EIVKALL K + N
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 196 ---DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
D TA+H A +++++ L+ + N+ D +GN+ LH+A + RV+ KL
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERVEEA-KL 191
Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
L G + NK +T L A K G +G+ILK
Sbjct: 192 LVSQGASIYIENKEEKTPLQVA-KGG---LGLILK 222
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 7/209 (3%)
Query: 54 MLSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEV 112
+L + +Q G L+ + + ++ ++ + + +L +G+ FHIA G LEV
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 113 LKILME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
+K L + L L + T LH A + EV +FL+E G+++ + N + LH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-QIPLHR 146
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
AA G L++++ L V DK+G T L A+ + LV+ ++VD
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDK 260
KG A +A + Q+ + LN N VDK
Sbjct: 207 KGAKAEDVALNE---QVKKFFLN-NVVDK 231
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 107 QGCLE--VLKI--LMEALPELLMTFDSSNTTALH-TASSQGHVEVVKFLLEK--GSTLAT 159
Q C+E K+ L+ + P LL+ D LH + S Q H E+ FLL K L
Sbjct: 8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDD 66
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIEL 214
+G T H A G+LE+VK+L + L+ D +G T LH+AV + E+
Sbjct: 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN---KSRETAL 271
L++ + + D LH A G +++++ L G+ K+ +N K T L
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPL 178
Query: 272 DTAEKTGHSEIGVILKE 288
A GH + V+L E
Sbjct: 179 FHALAEGHGDAAVLLVE 195
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEK--GSTLATIARSNGKTALHSAARNGHLEIVKALL 185
D S T H A S G++EVVK L ++ L I + G T LH A E+ + L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKWFEVSQFLI 127
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
+ ++ DK Q LH A S++L++ L + +N D +G + L A +G
Sbjct: 128 ENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 246 VQIVQKLLNINGVDKAVINKSRETALDTA 274
L+ G + +++ A D A
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV-KVEPV-II 226
LH A V+ LL +P ++L+ D+ G+ LH +V Q+ E+ L+ K+E V +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLN 254
+ D G + HIA G +++V+ L +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
LH A + V+ LL +L +G+ LH + EI LLSK + L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 195 N--DKKGQTALHMAVKGQSIELVDELVK--VEPVIINMVDAKGNSALHIATRKGRVQIVQ 250
+ D G T H+A ++E+V L ++P +N + +G + LH+A K ++ Q
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 251 KLLNINGVDKAVINKSRETALDTAEKTG 278
L+ NG + +K + L A G
Sbjct: 125 FLIE-NGASVRIKDKFNQIPLHRAASVG 151
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKA--RNGYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR +I + A + A G H+AA G LE++++L++ ++
Sbjct: 18 LLEAARAGQDDEVRILI----ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
D T LH A+ GH+E+V+ LL+ G+ + + G T LH AA GHLEIV+
Sbjct: 74 DAA-DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT-GSTPLHLAADEGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIEL 214
LL K V DK G+TA +++ + +L
Sbjct: 132 LL-KYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 55 LSKMNQSGETALYVAAEYGYVDMVREMIRYH-DTSLAGIKARNGYDAFHIAAKQGCLEVL 113
++ ++ +G T L++AA G++++V ++++ D A + G+ H+AA G LE++
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY---GFTPLHLAAMTGHLEIV 96
Query: 114 KILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA 173
++L++ ++ FD + +T LH A+ +GH+E+V+ LL+ G+ + + GKTA +
Sbjct: 97 EVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF-GKTAFDISI 154
Query: 174 RNGHLEIVKA 183
NG+ ++ K+
Sbjct: 155 DNGNEDLAKS 164
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ L++ + D G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K ++ D G + LH+A G ++IV+ LL G D + + T L
Sbjct: 61 EIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKY-GADVNAFDMTGSTPLH 118
Query: 273 TAEKTGHSEIGVILKEHG 290
A GH EI +L ++G
Sbjct: 119 LAADEGHLEIVEVLLKYG 136
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 13/205 (6%)
Query: 57 KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLK 114
++ + G++ L++A + + E+IR LA + +N H+A E+ +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 115 ILMEA--LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST--LATIARS---NGKT 167
L+ A PEL D T LH A QG + V L + +T L +I ++ NG T
Sbjct: 63 ALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 168 ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIIN 227
LH A+ +G+L IV+ L+S + + G+TALH+AV Q+ +LV L+K +N
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVN 178
Query: 228 MVDAKGNSALHIATRKGRVQIVQKL 252
V +G S + + +I Q+L
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQL 203
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK--VEP 223
+T LH A EI +ALL LR D +G T LH+A + + V L + P
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 224 ---VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD 259
I+ + G++ LH+A+ G + IV+ L+++ G D
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GAD 142
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREM 81
R +TPL G + V + S L +L N +G T L++A+ +GY+ +V E+
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV-EL 135
Query: 82 IRYHDTSLAGIKARNGYDAFHIA 104
+ + + NG A H+A
Sbjct: 136 LVSLGADVNAQEPCNGRTALHLA 158
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLKI 115
+ + G++ L++A + + E+IR LA + +N H+A E+ +
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 116 LMEAL--PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST--LATIARS---NGKTA 168
L+ A PEL D T LH A QG + V L + +T L +I ++ NG T
Sbjct: 61 LLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 117
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
LH A+ +G+L IV+ L+S + + G+TALH+AV Q+ +LV L+K +N
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNR 176
Query: 229 VDAKGNSALHIATRKGRVQIVQKL 252
V +G S + + +I Q+L
Sbjct: 177 VTYQGYSPYQLTWGRPSTRIQQQL 200
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK--VEP 223
+T LH A EI +ALL LR D +G T LH+A + + V L + P
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 224 ---VIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD 259
I+ + G++ LH+A+ G + IV+ L+++ G D
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GAD 139
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREM 81
R +TPL G + V + S L +L N +G T L++A+ +GY+ +V E+
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV-EL 132
Query: 82 IRYHDTSLAGIKARNGYDAFHIA 104
+ + + NG A H+A
Sbjct: 133 LVSLGADVNAQEPCNGRTALHLA 155
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 41/209 (19%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
A + G E + L+EA ++ D N T LH A+ +++VK+ + KG+ + +
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 164 NGKTALHSAARNGHLEIVKALL--SKEPGIVLRNDKKGQTALHMA-------------VK 208
T LH A R GHL +V L+ +P ++ D +G + +H+A K
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 209 GQSIELVDE------------LVKVEP--------VIINMVDA-KGNSALHIATRKGRVQ 247
GQ ++++D+ V+P V +N+ D N+ALH A G
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEK 276
++ LL G + N E+ALD A++
Sbjct: 192 VISLLLEA-GANVDAQNIKGESALDLAKQ 219
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 7/208 (3%)
Query: 54 MLSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEV 112
+L + +Q G L+ + + ++ ++ + + +L +G+ FHIA G LEV
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 113 LKILME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
+K L + L L + T LH A + EV +FL+E G+++ + N + LH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-QIPLHR 146
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
AA G L++++ L V DK+G T L A+ + LV+ ++VD
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVD 259
KG A +A + Q+ + LN N VD
Sbjct: 207 KGAKAEDVALNE---QVKKFFLN-NVVD 230
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 107 QGCLE--VLKI--LMEALPELLMTFDSSNTTALH-TASSQGHVEVVKFLLEK--GSTLAT 159
Q C+E K+ L+ + P LL+ D LH + S Q H E+ FLL K L
Sbjct: 8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDD 66
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIEL 214
+G T H A G+LE+VK+L + L+ D +G T LH+AV + E+
Sbjct: 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN---KSRETAL 271
L++ + + D LH A G +++++ L G+ K+ +N K T L
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPL 178
Query: 272 DTAEKTGHSEIGVILKE 288
A GH + V+L E
Sbjct: 179 FHALAEGHGDAAVLLVE 195
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEK--GSTLATIARSNGKTALHSAARNGHLEIVKALL 185
D S T H A S G++EVVK L ++ L I + G T LH A E+ + L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKWFEVSQFLI 127
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
+ ++ DK Q LH A S++L++ L + +N D +G + L A +G
Sbjct: 128 ENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 246 VQIVQKLLNINGVDKAVINKSRETALDTA 274
L+ G + +++ A D A
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV-KVEPV-II 226
LH A V+ LL +P ++L+ D+ G+ LH +V Q+ E+ L+ K+E V +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLN 254
+ D G + HIA G +++V+ L +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
LH A + V+ LL +L +G+ LH + EI LLSK + L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 195 N--DKKGQTALHMAVKGQSIELVDELVK--VEPVIINMVDAKGNSALHIATRKGRVQIVQ 250
+ D G T H+A ++E+V L ++P +N + +G + LH+A K ++ Q
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 251 KLLNINGVDKAVINKSRETALDTAEKTG 278
L+ NG + +K + L A G
Sbjct: 125 FLIE-NGASVRIKDKFNQIPLHRAASVG 151
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 6/203 (2%)
Query: 54 MLSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEV 112
+L + +Q G L+ + + ++ ++ + + +L +G+ FHIA G LEV
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 113 LKILME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
+K L + L L + T LH A + EV +FL+E G+++ + N + LH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-QIPLHR 146
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
AA G L++++ L V DK+G T L A+ + LV+ ++VD
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 232 KGNSALHIATRKGRVQIVQKLLN 254
KG A +A + Q+ + LN
Sbjct: 207 KGAKAEDVALNE---QVKKFFLN 226
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 107 QGCLE--VLKI--LMEALPELLMTFDSSNTTALH-TASSQGHVEVVKFLLEK--GSTLAT 159
Q C+E K+ L+ + P LL+ D LH + S Q H E+ FLL K L
Sbjct: 8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDD 66
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIEL 214
+G T H A G+LE+VK+L + L+ D +G T LH+AV + E+
Sbjct: 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVIN---KSRETAL 271
L++ + + D LH A G +++++ L G+ K+ +N K T L
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPL 178
Query: 272 DTAEKTGHSEIGVILKE 288
A GH + V+L E
Sbjct: 179 FHALAEGHGDAAVLLVE 195
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEK--GSTLATIARSNGKTALHSAARNGHLEIVKALL 185
D S T H A S G++EVVK L ++ L I + G T LH A E+ + L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKWFEVSQFLI 127
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
+ ++ DK Q LH A S++L++ L + +N D +G + L A +G
Sbjct: 128 ENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 246 VQIVQKLLNINGVDKAVINKSRETALDTA 274
L+ G + +++ A D A
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV-KVEPV-II 226
LH A V+ LL +P ++L+ D+ G+ LH +V Q+ E+ L+ K+E V +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLN 254
+ D G + HIA G +++V+ L +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
LH A + V+ LL +L +G+ LH + EI LLSK + L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 195 N--DKKGQTALHMAVKGQSIELVDELVK--VEPVIINMVDAKGNSALHIATRKGRVQIVQ 250
+ D G T H+A ++E+V L ++P +N + +G + LH+A K ++ Q
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 251 KLLNINGVDKAVINKSRETALDTAEKTG 278
L+ NG + +K + L A G
Sbjct: 125 FLIE-NGASVRIKDKFNQIPLHRAASVG 151
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK-------TALHSAARNGHLEI 180
DS+ TALH + S + VV+ LL+ G + + + N TAL + +E
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSG--VCKVDKQNRAGYSPIMLTALATLKTQDDIET 165
Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
V L + I + + GQTAL +AV +++V L+ E +N+ D G++AL A
Sbjct: 166 VLQLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCA 223
Query: 241 TRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 286
G +I LL + D ++ ++ TAL A G SEI +L
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 8/138 (5%)
Query: 55 LSKMNQSGE-----TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGC 109
+ K N++G TAL ++ V ++ R + + +A G A +A G
Sbjct: 138 VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA--GQTALMLAVSHGR 195
Query: 110 LEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL 169
++V+K L+ ++ + D +TAL A GH E+ LL S ++ +G TAL
Sbjct: 196 VDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL 254
Query: 170 HSAARNGHLEIVKALLSK 187
A G EI L S+
Sbjct: 255 MVALDAGQSEIASMLYSR 272
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
A + G + ++ILM ++ D + T LH A+ +GH+E+V+ LL+ G+ + + S
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDS 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
G+T LH AA GHLEIV+ LL + + DK G+TA +++ + +L + L K+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G H+AAK+G LE++++L++ ++ + DS T LH A++ GH+E+V+ LLE G+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKAL 184
+ + GKTA + NG+ ++ + L
Sbjct: 106 VNAQDKF-GKTAFDISIDNGNEDLAEIL 132
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
+N +D G + LH+A ++G ++IV+ LL +G D + T L A GH EI +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDSWGRTPLHLAATVGHLEIVEV 98
Query: 286 LKEHG 290
L E+G
Sbjct: 99 LLEYG 103
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 240 ATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKS 296
ATR G+ V ++L NG D ++ + T L A K GH EI +L +HG S
Sbjct: 21 ATRAGQDDEV-RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL--SK 187
++ ++H ++QG ++ +K L KG L G T L A+ G +E V+ LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
+P I+ K+ ++AL +A G ++V L++ + V IN+ D G + L A R V+
Sbjct: 61 DPHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVK 116
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
V+ LL G D S T +D A G+ ++ +++ H
Sbjct: 117 CVEALL-ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
+ H A QG L+ LK + L+ D T L AS+ G +E V+FLLE G+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
+A+ ++AL A+ G+ +IV LL ++ I + D G T L AV+G ++ V+ L+
Sbjct: 65 LAKER-ESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALL 122
Query: 220 KVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
+ D+ G + + +A G ++ Q + N
Sbjct: 123 ARGADLTTEADS-GYTPMDLAVALGYRKVQQVIEN 156
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 204 HMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVI 263
+A +G+ +L + L K + ++N D +G + L A+ G ++ V+ LL G D ++
Sbjct: 8 QLAAQGELDQLKEHLRKGDN-LVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHIL 65
Query: 264 NKSRETALDTAEKTGHSEIGVILKEHGV 291
K RE+AL A G+++I +L E V
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDV 93
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
A + G + ++ILM ++ D + T LH A+ +GH+E+V+ LL+ G A + S
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHG---ADVNAS 76
Query: 164 N--GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
+ G+T LH AA GHLEIV+ LL + + DK G+TA +++ + +L + L K+
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G H+AAK+G LE++++L++ ++ + D T LH A++ GH+E+V+ LLE G+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKAL 184
+ + GKTA + NG+ ++ + L
Sbjct: 106 VNAQDKF-GKTAFDISIDNGNEDLAEIL 132
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
+N +D G + LH+A ++G ++IV+ LL +G D + T L A GH EI +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDIWGRTPLHLAATVGHLEIVEV 98
Query: 286 LKEHG 290
L E+G
Sbjct: 99 LLEYG 103
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 240 ATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKS 296
ATR G+ V ++L NG D ++ + T L A K GH EI +L +HG S
Sbjct: 21 ATRAGQDDEV-RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
A + G + ++ILM ++ D + T LH A+ +GH+E+V+ LL+ G+ + AR
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ARD 77
Query: 164 -NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
G+T LH AA GHLEIV+ LL + + DK G+TA +++ + +L + L K+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G H+AAK+G LE++++L++ + + D T LH A++ GH+E+V+ LLE G+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKAL 184
+ + GKTA + NG+ ++ + L
Sbjct: 106 VNAQDKF-GKTAFDISIDNGNEDLAEIL 132
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 226 INMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
+N +D G + LH+A ++G ++IV+ LL +G D + T L A GH EI +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNARDIWGRTPLHLAATVGHLEIVEV 98
Query: 286 LKEHG 290
L E+G
Sbjct: 99 LLEYG 103
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 240 ATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
ATR G+ V ++L NG D ++ + T L A K GH EI +L +HG
Sbjct: 21 ATRAGQDDEV-RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D T LH A+ H+E+V+ LL+ G+ + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDN 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
+G T LH AA GHLEIV+ LL K V DK G+TA +++ + +L + L K+
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
AAR G + V+ L++ V ND+KG T LH+A +E+V+ L+K +N D
Sbjct: 21 AARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDN 78
Query: 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
G++ LH+A G ++IV+ LL +G D +K +TA D + G+ ++ IL++
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKA--RNGYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR ++ + A + A R G H+AA LE++++L++ ++
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
D+ +T LH A+ GH+E+V+ LL+ G+ + + GKTA + NG+ ++ +
Sbjct: 74 -NAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 184 L 184
L
Sbjct: 132 L 132
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N D KGN+ LH+A ++IV+ LL +G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGA 71
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK 298
D + T L A GH EI +L +HG K
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA--RNGYDAFHIAAKQGCLEVLKIL 116
++ G T L++AA+Y ++++V ++++ A + A +G H+AA G LE++++L
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHG----ADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 117 ME 118
++
Sbjct: 100 LK 101
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 8/223 (3%)
Query: 54 MLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY--DAFHIAAKQGCLE 111
M ++ ++ G+T L++A G + V ++ + N H+A
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 112 VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS--TLATIARS-NGKTA 168
V+++L+ A M D TA H A ++ LL+ + TL AR+ +G TA
Sbjct: 61 VVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
LH A E V+ LL + I + K G++ L AV+ S+ +V L++ +N
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNA 178
Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETAL 271
G+SALH A+ +G + +V+ L+ +G D ++ N +T L
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPL 220
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 12/202 (5%)
Query: 24 DTPLQSLVRTGSVELVLDMISSY--GDMELREMLSKMNQSGETALYVAAEYGYVDMVREM 81
DTPL V G++ V +++ + G EL ++ + + Q T L++A +VR +
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQ---TPLHLAVITTLPSVVRLL 65
Query: 82 IRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN---TTALHTA 138
+ + +A R+G A H+A + L+ L+++ + ++ N TALH A
Sbjct: 66 VTAGASPMA--LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123
Query: 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
+ E V+ LLE+G+ + + +G++ L A N L +V+ LL + +
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM-YS 182
Query: 199 GQTALHMAVKGQSIELVDELVK 220
G +ALH A + LV LV+
Sbjct: 183 GSSALHSASGRGLLPLVRTLVR 204
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
LH AA+ G+L ++ L G+ DK G TAL+ A G ++V+ L + +N
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
+ G++ALH A KG IVQ LL G + N ++ A D A T + ++ K+
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLL-AKGARTDLRNIEKKLAFDXA--TNAACASLLKKK 192
Query: 289 HGVPCGKSIKPQANSARELKQAVSDIK 315
G +++ +N+ L SD++
Sbjct: 193 QGT---DAVRTLSNAEDYLDDEDSDLE 216
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
H AAK+G L L+ ++ + D + +TAL+ A GH ++V+ L + +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
G TALH+AA G+ +IV+ LL+K LRN +K
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVL- 193
LH A+ +G++ ++ L+ + + ++ G TAL+ A GH +IV+ L + +P I L
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLFT-QPNIELN 134
Query: 194 RNDKKGQTALHMAV 207
+ +K G TALH A
Sbjct: 135 QQNKLGDTALHAAA 148
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
D PL + G++ + + + + R ++ ++++G TALY A G+ D+V +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDN------RVGVNGLDKAGSTALYWACHGGHKDIVEXLFT 127
Query: 84 YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
+ L + + G A H AA +G +++++L+
Sbjct: 128 QPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 55 LSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEVL 113
L++ N+ G+TAL+ AA GY D+V+ ++ + T L I+ + AF A C +L
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKL---AFDXATNAACASLL 189
Query: 114 K 114
K
Sbjct: 190 K 190
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL--SK 187
++ ++H ++QG ++ +K L KG L G T L A+ G +E V+ LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
+P I+ K+ ++AL +A G ++V L++ + V IN+ D G + L A V+
Sbjct: 61 DPHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVHGNHVK 116
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
V+ LL G D S T +D A G+ ++ +++ H
Sbjct: 117 CVEALL-ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 3/155 (1%)
Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
+ H A QG L+ LK + L+ D T L AS+ G +E V+FLLE G+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
+A+ ++AL A+ G+ +IV LL ++ I + D G T L AV G ++ V+ L+
Sbjct: 65 LAKER-ESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVHGNHVKCVEALL 122
Query: 220 KVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
+ D+ G + + +A G ++ Q + N
Sbjct: 123 ARGADLTTEADS-GYTPMDLAVALGYRKVQQVIEN 156
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 204 HMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVI 263
+A +G+ +L + L K + ++N D +G + L A+ G ++ V+ LL G D ++
Sbjct: 8 QLAAQGELDQLKEHLRKGDN-LVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHIL 65
Query: 264 NKSRETALDTAEKTGHSEIGVILKEHGV 291
K RE+AL A G+++I +L E V
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDV 93
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G HIA+ +G + ++ L++ + + D + T LH A + GH++VV+ LL+ +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLS 186
+ T N + LH AA+NGH++IVK LLS
Sbjct: 69 VNTTGYQN-DSPLHDAAKNGHVDIVKLLLS 97
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
N GET L++A+ G + V +++ + S +K G+ H A G L+V+++L++
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
L+ T N + LH A+ GHV++VK LL G++
Sbjct: 65 H-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 36/130 (27%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
T LH AS +G + V++LL+ GS + G T LH A +GHL++V
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVV----------- 59
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
EL+ ++N + +S LH A + G V IV+ L
Sbjct: 60 ------------------------ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Query: 253 LNINGVDKAV 262
L+ AV
Sbjct: 96 LSYGASRNAV 105
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D T LH A+ H+E+V+ LL+ G+ + I +
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-DA 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
G+T LH A GHLEIV+ LL K V DK G+TA +++ + +L + L K+
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
A+ G + V+ L+ G+ + + G T LH AA N HLEIV+ LL K V D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKV-GLTPLHLAAMNDHLEIVEVLL-KNGADVNAIDA 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQIVQKL 252
G+T LH+ +E+V+ L+K +N D G +A I+ G +I+QKL
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N D G + LH+A ++IV+ LL NG
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGA 71
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D I+ ET L GH EI +L +HG
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL +E+V ++ + D+ + ++ GET L++ A YG++++V ++++
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADV------NAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
Query: 85 HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
A + A++ G AF I+ G ++ +IL
Sbjct: 103 G----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
T LH A+ GH+E+V+ LL+ G+ + + G+T LH AA HLEIV+ LL K V
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLL-KHGADV 106
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKV 221
DK G+TA +++ + +L + L K+
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPV 224
G T LH AA GHLEIV+ LL K V G+T LH+A +E+V+ L+K
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLL-KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGA 104
Query: 225 IINMVDAKGNSALHIATRKGR---VQIVQKL 252
+N D G +A I+ G +I+QKL
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
+GS S+ L AAR G + V+ +L+ V ND G T LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272
E+V+ L+K +N G + LH+A ++IV+ LL +G D +K +TA D
Sbjct: 61 EIVEVLLK-NGADVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFD 118
Query: 273 TAEKTGHSEIGVILKE 288
+ G+ ++ IL++
Sbjct: 119 ISIDNGNEDLAEILQK 134
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR + + A + A + G+ H+AA G LE++++L++ ++
Sbjct: 18 LLEAARAGQDDEVRILT----ANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
T ++ T LH A+ H+E+V+ LL+ G+ + + GKTA + NG+ ++ +
Sbjct: 74 NATGNTGRTP-LHLAAWADHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 184 L 184
L
Sbjct: 132 L 132
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N D G++ LH+A G ++IV+ LL NG
Sbjct: 15 GKKLLEAARAGQDDEV--RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGA 71
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D + T L A H EI +L +HG
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 5/190 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA Q + +K +++ + D+ T L+ A +E+ K L+++G+ +
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
+ L++ A+ G EI+ +L + ++++ G AL A + I+ V L++
Sbjct: 72 SDSPYLYAGAQ-GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130
Query: 224 VIINMVDAKGNSAL--HIATRKGR--VQIVQKLLNINGVDKAVINKSRETALDTAEKTGH 279
I+ + G +AL + R+G Q + KLL NG D+++ + S TA+D A + G+
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190
Query: 280 SEIGVILKEH 289
+EI IL ++
Sbjct: 191 TEISKILAQY 200
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 55 LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAF--HIAAKQG-- 108
L+K N+ G AL AAE G++D V+ ++ + I +N GY A + ++G
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLL---EDGREDIDFQNDFGYTALIEAVGLREGNQ 155
Query: 109 -CLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
+++K+LME + + D+S TA+ A+ +G+ E+ K L
Sbjct: 156 LYQDIVKLLMENGADQSIK-DNSGRTAMDYANQKGYTEISKIL 197
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 168 ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIIN 227
AL AA + VK +L V D +G T L++AV IE+ L+ IN
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADIN 66
Query: 228 MVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
+ ++ +S A +GR +I+ +L D N+ AL A + GH + +L
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 288 EHG 290
E G
Sbjct: 127 EDG 129
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D T L+ A++ GH+E+V+ LL+ G+ + + +
Sbjct: 21 AARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DA 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
G T LH AA GHLEI + LL K V DK G+TA +++ + +L + L K+
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N D G + L++AT G ++IV+ LL NG
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGA 71
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D ++ T L A GH EI +L +HG
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
++ G T LY+A +G++++V +++ + A + A + G+ H+AA G LE+ ++L
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Query: 117 ME 118
++
Sbjct: 100 LK 101
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 29/250 (11%)
Query: 64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
T L++AA Y V +V+ ++++ A K + G H A G EV ++L++
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHA--KDKGGLVPLHNACSYGHYEVTELLLKH-GAC 116
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL-------------- 169
+ D T LH A+S+ VEV LL G+ T+ +GK+A+
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTY 175
Query: 170 ----HS---AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG--QSIELVDELVK 220
HS AAR L VK L+ E I + + +TALH AV + V EL+
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLL 234
Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS 280
+ +N + + LH+A + +++ +L+ +G ++ +TAL A GH
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKMNALDSLGQTALHRAALAGHL 293
Query: 281 EIGVILKEHG 290
+ +L +G
Sbjct: 294 QTCRLLLSYG 303
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 31/216 (14%)
Query: 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
H+AA + ++++L++ ++ D LH A S GH EV + LL+ G+ + +
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRNDKKGQTALHMA------------ 206
T LH AA +E+ LLS +P +V + G++A+ MA
Sbjct: 121 DLWQF-TPLHEAASKNRVEVCSLLLSHGADPTLV---NCHGKSAVDMAPTPELRERLTYE 176
Query: 207 VKGQSIELV---DELVKVEPV----IINMVDAKGN-SALHIAT---RKGRVQIVQKLLNI 255
KG S+ +L KV+ IIN + + +ALH A R Q+ + LL
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR- 235
Query: 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
G + NK T L A + H+++ +L +HG
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS--KEPG 190
T LH A+ + H +V++ L + G+ + + S G+TALH AA GHL+ + LLS +P
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 191 IV 192
I+
Sbjct: 308 II 309
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251
VL + K L A G +L+ L + V + D + ++ LH+A RV+IVQ
Sbjct: 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLN-VNCHASDGRKSTPLHLAAGYNRVRIVQL 76
Query: 252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291
LL +G D +K L A GH E+ +L +HG
Sbjct: 77 LLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 57 KMNQSGETALY--VAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLK 114
K QS ETAL+ VA+ + V E++ ++ K ++ H+AA++ +V++
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVME 264
Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161
+L + ++ DS TALH A+ GH++ + LL GS + I+
Sbjct: 265 VLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 37/229 (16%)
Query: 76 DMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL 135
+++R + R D + A + +G A H A ++++K L+E + D+ L
Sbjct: 55 EVLRLLERGADINYANV---DGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPL 110
Query: 136 HTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL-------------HSAARNGHLEIVK 182
H A+S G++++ ++L+ +G+ + + S G T L + R G ++
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQG--VDIE 167
Query: 183 ALLSKEPGIVLR-----------ND----KKGQTALHMAVKGQSIELVDELVKVEPVIIN 227
A +E I+LR ND K G TALH+A E++ L++ +N
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVN 226
Query: 228 MVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEK 276
+ D G + LH A G+ + + L+ N D +NK +TA D A++
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE 274
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND 196
A S G E V LLE+G+ + A +G TALH A + ++++VK L+ I + D
Sbjct: 46 AACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPD 103
Query: 197 KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256
+G LH A +++ + L+ + + V+++G++ L IA + +++Q +N
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 257 GVDKAVINKSRE 268
GVD K E
Sbjct: 163 GVDIEAARKEEE 174
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
A++G A H+AA +G EVLK+L++A ++ + D T LH A+ G E + L+E
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACRILVEN 254
Query: 154 GSTLATIARSNGKTALHSAARN--GHLE 179
+ + + G+TA A + G+LE
Sbjct: 255 LCDMEAVNKV-GQTAFDVADEDILGYLE 281
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 60 QSGETALYVAAEYGYVDMVREMI--RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
+SG TAL+VAA GY ++++ +I RY IK +G+ H AA G E +IL+
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 118 EALPEL 123
E L ++
Sbjct: 253 ENLCDM 258
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
L +A+++G +E + LL+ + G+TAL + G+ EI + LL + L+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
D+ G +H A + ++ + L++ + +N+ D +GN LH+A ++G +++V+ L+
Sbjct: 67 -DRTGNAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
+ N +TA D A G +E+ +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 92 IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
+K R G H AA+ G L+ L+ L+E ++ + D+ LH A+ +GH+ VV+FL+
Sbjct: 65 LKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
+ ++ G TA A G E+V + + G
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 35.8 bits (81), Expect = 0.058, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
+++G ++ AA G++D ++ ++ + + I+ G H+AAK+G L V++ L++
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
+ + TA A G EVV + G+ AT
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 37/177 (20%)
Query: 99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA 158
D ++G +++ ++ L D + LH A +G VV+ L+ +G+ +
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 159 TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
+ R + T LH AA +GH +IV+ LL +
Sbjct: 67 VMNRGD-DTPLHLAASHGHRDIVQKLLQYK------------------------------ 95
Query: 219 VKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAE 275
IN V+ GN LH A G+ Q+ + L+ NG ++ NK E +D A+
Sbjct: 96 -----ADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVDKAK 146
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
+ + R G+ V+ L + + D G + LH A + + V E++ + IN+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIMRGARINV 67
Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
++ ++ LH+A G IVQKLL D +N+ L A G ++ L
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 289 HGV 291
+G
Sbjct: 127 NGA 129
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
+PL R G V++M+ G ++ MN+ +T L++AA +G+ D+V+++++Y
Sbjct: 41 SPLHWACREGR-SAVVEMLIMRG-----ARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
L +A+++G +E + LL+ + G+TAL + G+ EI + LL + L+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
D+ G +H A + ++ + L++ + +N+ D +GN LH+A ++G +++V+ L+
Sbjct: 67 -DRTGFAVIHDAARAGQLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
+ N +TA D A G +E+ +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 92 IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
+K R G+ H AA+ G L+ L+ L+E ++ + D+ LH A+ +GH+ VV+FL+
Sbjct: 65 LKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
+ ++ G TA A G E+V + + G
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
+++G ++ AA G +D ++ ++ + + I+ G H+AAK+G L V++ L++
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
+ + TA A G EVV + G+ AT
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRND 196
A+ G + V+ L+ G+ +A + NG T LH AARNGHLE+VK LL E G V D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL--EAGADVXAQD 87
Query: 197 KKGQTALHMAVKGQSIELVD 216
K G+TA +++ + +L +
Sbjct: 88 KFGKTAFDISIDNGNEDLAE 107
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D + +T LH A+ GH+EVVK LLE G+ + +
Sbjct: 31 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 164 NGKTALHSAARNGHLEIVKAL 184
GKTA + NG+ ++ + L
Sbjct: 90 -GKTAFDISIDNGNEDLAEIL 109
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
L AA G D VR I + + K +NG H+AA+ G LEV+K+L+EA ++
Sbjct: 28 LLEAARAGQDDEVR--ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA 85
Query: 126 TFDSSNTTALHTASSQGHVEVVKFL 150
D TA + G+ ++ + L
Sbjct: 86 Q-DKFGKTAFDISIDNGNEDLAEIL 109
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ + D G++ LH+A R G +++V+ LL G
Sbjct: 25 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 81
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILK 287
D +K +TA D + G+ ++ IL+
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
L AAR G + V+ L++ + + DK G T LH+A + +E+V L++ +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXA 85
Query: 229 VDAKGNSALHIATRKGRVQIVQKL 252
D G +A I+ G + + L
Sbjct: 86 QDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
E+ L +AA+ V + +++++ + + G A HIAA LE +LMEA PE
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 123 LLMTFDSS----NTTALHTASSQGHVEVVKFLLEKGSTLATIARSN------------GK 166
L+ +S TALH A +V +V+ LL +G++++ A + G+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLR-NDKKGQTALHMAV 207
L AA G EIV+ L+ E G +R D G T LH+ +
Sbjct: 123 HPLSFAACVGSEEIVRLLI--EHGADIRAQDSLGNTVLHILI 162
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVII--NMV 229
AA+ ++ + LL E V + G+TALH+A ++E L++ P ++ M
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 230 DA--KGNSALHIATRKGRVQIVQKLL----NINGVDKAVINKSR--------ETALDTAE 275
+G +ALHIA V +V+ LL +++ + R E L A
Sbjct: 70 SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129
Query: 276 KTGHSEIGVILKEHG 290
G EI +L EHG
Sbjct: 130 CVGSEEIVRLLIEHG 144
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 129 SSNTTA---LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
S N+ A L A+ G VE VK L S T LH AA + +V+ LL
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
+ V DK G LH A E+ + LVK ++N+ D + LH A KG+
Sbjct: 65 -QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGK 122
Query: 246 VQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
+I + LL +G D N+ T LD K G ++I +L+
Sbjct: 123 YEICKLLLQ-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 162
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 206 AVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINK 265
A K +E V +L V+ V ++ + ++ LH A RV +V+ LL +G D +K
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDK 75
Query: 266 SRETALDTAEKTGHSEIGVILKEHG 290
L A GH E+ +L +HG
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHG 100
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 4/160 (2%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
+S L A+ G VE VK L S T LH AA + +V+ LL +
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 63
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
V DK G LH A E+ + LVK ++N+ D + LH A KG+ +
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
I + LL +G D N+ T LD K G ++I +L+
Sbjct: 123 ICKLLLQ-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 160
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 206 AVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINK 265
A K +E V +L V+ V ++ + ++ LH A RV +V+ LL +G D +K
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDK 73
Query: 266 SRETALDTAEKTGHSEIGVILKEHG 290
L A GH E+ +L +HG
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHG 98
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
L +A+++G +E + LL+ + G+TAL + G+ EI + LL + L+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
D+ G +H A + ++ + L++ + +N+ D +GN LH+A ++G +++V+ L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
+ N +TA D A G +E+ +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 92 IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
+K R G+ H AA+ G L+ L+ L+E ++ + D+ LH A+ +GH+ VV+FL+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
+ ++ G TA A G E+V + + G
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
+++G ++ AA G++D ++ ++ + + I+ G H+AAK+G L V++ L++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
+ + TA A G EVV + G+ AT
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
L +A+++G +E + LL+ + G+TAL + G+ EI + LL + L+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
D+ G +H A + ++ + L++ + +N+ D +GN LH+A ++G +++V+ L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
+ N +TA D A G +E+ +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 92 IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
+K R G+ H AA+ G L+ L+ L+E ++ + D+ LH A+ +GH+ VV+FL+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
+ ++ G TA A G E+V + + G
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRND 196
A+ G + V+ L+ G+ +A + NG T LH AARNGHLE+VK LL E G V D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL--EAGADVNAQD 69
Query: 197 KKGQTALHMAVKGQSIELVD 216
K G+TA +++ + +L +
Sbjct: 70 KFGKTAFDISIDNGNEDLAE 89
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D + +T LH A+ GH+EVVK LLE G+ + +
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
Query: 164 NGKTALHSAARNGHLEIVKAL 184
GKTA + NG+ ++ + L
Sbjct: 72 -GKTAFDISIDNGNEDLAEIL 91
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
L AA G D VR I + + K +NG H+AA+ G LEV+K+L+EA + +
Sbjct: 10 LLEAARAGQDDEVR--ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VN 66
Query: 126 TFDSSNTTALHTASSQGHVEVVKFL 150
D TA + G+ ++ + L
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ + D G++ LH+A R G +++V+ LL G
Sbjct: 7 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 63
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILK 287
D +K +TA D + G+ ++ IL+
Sbjct: 64 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
L AAR G + V+ L++ + + DK G T LH+A + +E+V L++ +N
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVNA 67
Query: 229 VDAKGNSALHIATRKGRVQIVQKL 252
D G +A I+ G + + L
Sbjct: 68 QDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 4/160 (2%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
+S L A+ G VE VK L S T LH AA + +V+ LL +
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 67
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
V DK G LH A E+ + LVK ++N+ D + LH A KG+ +
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287
I + LL +G D N+ T LD K G ++I +L+
Sbjct: 127 ICKLLLQ-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 164
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 190 GIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV 249
GI L N + + L A K +E V +L V+ V ++ + ++ LH A RV +V
Sbjct: 4 GISLGNSEADRQLLE-AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 62
Query: 250 QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
+ LL +G D +K L A GH E+ +L +HG
Sbjct: 63 EYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 102
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 104 AAKQGCLEVLKILM-EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR 162
AA+ G + ++ILM P T D T+ LH A+ GH + LL G ++ AR
Sbjct: 9 AARAGQDDEVRILMANGAP---FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDAR 63
Query: 163 SN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
+ +T LH AA GH IV+ LL K V D TALH A + E+V+ L+K
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSS---NTTALHTASSQGHVEVVKFLLEK 153
G H+AA+ G ++L+ A ++ D+ + T LH A+S+GH +V+ LL+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAG----VSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 154 GSTLATIARSNGK-----TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208
G+ + N K TALH A + H E+V+ LL K V K +TA +++
Sbjct: 90 GADV------NAKDMLKMTALHWATEHNHQEVVE-LLIKYGADVHTQSKFCKTAFDISID 142
Query: 209 GQSIELVD 216
+ +L +
Sbjct: 143 NGNEDLAE 150
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ + P + + G S LH+A + G + LL GV
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTTDWL---GTSPLHLAAQYGHFSTTEVLLRA-GV 58
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
+ K T L A GH+ I +L +HG
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
K D TPL G +V ++ D+ ++ML KM TAL+ A E+ + ++V
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML-KM-----TALHWATEHNHQEVVEL 118
Query: 81 MIRY 84
+I+Y
Sbjct: 119 LIKY 122
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
A+ G + V+ L+ G+ + + +G T LH AA+ GHLEIV+ LL K V D
Sbjct: 21 AARAGQDDEVRILMANGADVNAL-DEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDN 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQIVQKL 252
G T LH+A +E+V+ L+K +N D G +A I+ G +I+QKL
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKA--RNGYDAFHIAAKQGCLEVLKILMEALPEL 123
L AA G D VR ++ + A + A +G H+AA+ G LE++++L++ ++
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
D+ T LH A+ +GH+E+V+ LL+ G+ + + GKTA + NG+ ++ +
Sbjct: 74 -NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 184 L 184
L
Sbjct: 132 L 132
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N +D G + LH+A + G ++IV+ LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY-GA 71
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
D + T L A GH EI +L +HG
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
L +A+++G +E + LL+ + G+TAL + G+ EI + LL + L+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
D+ G +H A + ++ + L++ + +N+ D +GN LH+A ++G +++V+ L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLENQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 255 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290
+ N +TA D A G +E+ +++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 92 IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
+K R G+ H AA+ G L+ L+ L+E ++ + D+ LH A+ +GH+ VV+FL+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
+ ++ G TA A G E+V + + G
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
+++G ++ AA G++D ++ ++ + + I+ G H+AAK+G L V++ L++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLE--NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
+ + TA A G EVV + G+ AT
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
TALH A GH E+VKFL++ G + A S+G T LH AA ++++ K L+ +
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 193 LRNDKKGQTA 202
QTA
Sbjct: 131 AMTYSDMQTA 140
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 73 GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT 132
G D+V+ +I ++ + G A H A G E++K L++ + DS
Sbjct: 48 GEFDLVQRII--YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGW 104
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA 168
T LH A+S +V+V KFL+E G+ + + S+ +TA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
L ++ G ++V+ ++ + L ND+ G TALH AV E+V LV+ V +N
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQFG-VNVNA 98
Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAE--KTGHSEIGVIL 286
D+ G + LH A VQ+ + L+ A+ +TA D E + G+++ L
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VL 193
L +S +G ++V+ ++ + ++ G TALH+A GH EIVK L+ + G+ V
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNVN 97
Query: 194 RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIAT--RKGRVQIVQK 251
D G T LH A ++++ LV+ + M + +A +G Q Q
Sbjct: 98 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Query: 252 LLNINGVDKAVINKSRETALDTAEKTGHSEI 282
L + ++NK AL E E+
Sbjct: 158 LYGVQ-EKMGIMNKGVIYALWDYEPQNDDEL 187
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
TALH A GH E+VKFL++ G + A S+G T LH AA ++++ K L+ +
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 193 LRNDKKGQTA 202
QTA
Sbjct: 131 AMTYSDMQTA 140
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 73 GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT 132
G D+V+ +I ++ + G A H A G E++K L++ + DS
Sbjct: 48 GEFDLVQRII--YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGW 104
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA 168
T LH A+S +V+V KFL+E G+ + + S+ +TA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
L ++ G ++V+ ++ + L ND+ G TALH AV E+V LV+ V +N
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQFG-VNVNA 98
Query: 229 VDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAE--KTGHSEIGVIL 286
D+ G + LH A VQ+ + L+ A+ +TA D E + G+++ L
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 7/159 (4%)
Query: 127 FDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
F+ L +S +G ++V+ ++ + ++ G TALH+A GH EIVK L+
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLV- 90
Query: 187 KEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIAT--RK 243
+ G+ V D G T LH A ++++ LV+ + M + +A +
Sbjct: 91 -QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149
Query: 244 GRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
G Q Q L + ++NK AL E E+
Sbjct: 150 GYTQCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDEL 187
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 37/148 (25%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
D + LH A +G VV+ L+ +G+ + + R + T LH AA +GH +IV+ LL
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQY 89
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
+ IN V+ GN LH A G+ Q
Sbjct: 90 KAD-----------------------------------INAVNEHGNVPLHYACFWGQDQ 114
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAE 275
+ + L+ NG ++ NK E +D A+
Sbjct: 115 VAEDLV-ANGALVSICNKYGEMPVDKAK 141
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK-GQSIELVDELVKVEPVIIN 227
+ + R G+ V+ L + + D G + LH A + G+S V E++ + IN
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA--VVEMLIMRGARIN 61
Query: 228 MVDAKGNSALHIATRKGRVQIVQKLL----NINGVDK 260
+++ ++ LH+A G IVQKLL +IN V++
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE 98
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
+PL R G V++M+ G ++ MN+ +T L++AA +G+ D+V+++++Y
Sbjct: 36 SPLHWACREGR-SAVVEMLIMRG-----ARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
D+S T+ +H A+ G ++ +K L+E G+ + + G +H A + GH +V L ++
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE 123
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
+ R D +G T L +A++ + +LVD L
Sbjct: 124 SD--LHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 104 AAKQGCLEVLKILMEAL--PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161
AA+ EV ++L L P+ L F + + S+ +E LL++G++ +
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE----LLKQGAS-PNVQ 64
Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
++G + +H AAR G L+ +K L+ + + D G +H+AV+ +V L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE 123
Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
++ DA+G + L +A ++G +V L
Sbjct: 124 SD--LHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
D+S T+ +H A+ G ++ +K L+E G+ + + G +H A + GH +V L ++
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE 129
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
+ R D +G T L +A++ + +LVD L
Sbjct: 130 SD--LHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 104 AAKQGCLEVLKILMEAL--PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161
AA+ EV ++L L P+ L F + + S+ +E LL++G++ +
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE----LLKQGAS-PNVQ 70
Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
++G + +H AAR G L+ +K L+ + + D G +H+AV+ +V L
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE 129
Query: 222 EPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
++ DA+G + L +A ++G +V L
Sbjct: 130 SD--LHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE 188
+ + + LH A GH+ VK LL+ G+ + + ++ T L +A +G + V LL
Sbjct: 34 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT-ADWHTPLFNACVSGSWDCVNLLLQH- 91
Query: 189 PGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
G ++ + + +H A + +E V+ L+ I + + G + L++A +
Sbjct: 92 -GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRAC 149
Query: 249 VQKLLNINGVDKAVIN--KSRETALDTAEKTGHSEIGVILKEHG 290
V+KLL +G D +N K +++ L +T E+ +L + G
Sbjct: 150 VKKLLE-SGAD---VNQGKGQDSPLHAVARTASEELACLLMDFG 189
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Query: 61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL 120
S + ++ AA +G+ +R +I I + H A G L +KIL++
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLIS--QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 121 PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI 180
++ + T L A G + V LL+ G+++ S+ + +H AAR GH+E
Sbjct: 60 AQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVEC 116
Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG-NSALHI 239
V +L++ I + G T L++A + Q V +L++ ++ KG +S LH
Sbjct: 117 VNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESG---ADVNQGKGQDSPLHA 172
Query: 240 ATRKGRVQIVQKLLNINGVDKAVIN 264
R ++ L++ G D N
Sbjct: 173 VARTASEELACLLMDF-GADTQAKN 196
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 205
V+ + +G++L G+TALH AAR + K LL ++ D G+T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 64
Query: 206 AVKGQSIELVDELVK-------------VEPVI--------------------INMVDAK 232
AV + + L++ P+I +N VD
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
G SALH A V LL NG +K + N ET L A + G E +L +H
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKI 115
++ +++GETAL++AA Y D + ++ ++ A I+ G H A V +I
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQI 76
Query: 116 LM 117
L+
Sbjct: 77 LI 78
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 205
V+ + +G++L G+TALH AAR + K LL ++ D G+T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHA 61
Query: 206 AVKGQSIELVDELVK-------------VEPVI--------------------INMVDAK 232
AV + + L++ P+I +N VD
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
G SALH A V LL NG +K + N ET L A + G E +L +H
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 177
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 205
V+ + +G++L G+TALH AAR + K LL ++ D G+T LH
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 97
Query: 206 AVKGQSIELVDELVK-------------VEPVI--------------------INMVDAK 232
AV + + L++ P+I +N VD
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 157
Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
G SALH A V LL NG +K + N ET L A + G E +L +H
Sbjct: 158 GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDH 213
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 205
V+ + +G++L G+TALH AAR + K LL ++ D G+T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 96
Query: 206 AVKGQSIELVDELVK-------------VEPVI--------------------INMVDAK 232
AV + + L++ P+I +N VD
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
G SALH A V LL NG +K + N ET L A + G E +L +H
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKI 115
++ +++GETAL++AA Y D + ++ ++ A I+ G H A V +I
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQI 108
Query: 116 LM 117
L+
Sbjct: 109 LI 110
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 284
+IN D +G + L A G++ +V+ LL NG D ++ K RE+AL A G+++I
Sbjct: 44 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVK 102
Query: 285 ILKEHGV 291
+L + GV
Sbjct: 103 MLLDCGV 109
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 125 MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL 184
+ F +N+ ++H ++QG + + +E+ + + G T L AA +G + +V+ L
Sbjct: 13 LYFQGANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFL 71
Query: 185 LSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR 242
L +P ++ K ++AL +A ++V L+ V +N D G + L A
Sbjct: 72 LQNGADPQLL---GKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVH 127
Query: 243 KGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK 298
V+ V+ LL +G D + S ++D A G+ + +++ H + ++IK
Sbjct: 128 GNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 182
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 97 GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
G+ AA G + V++ L++ A P+LL +AL A S+G+ ++VK LL+ G
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGRESALSLACSKGYTDIVKMLLDCG 108
Query: 155 STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
+ NG T L A H++ VK LL + D G ++ +AV
Sbjct: 109 VDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 159
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 284
+IN D +G + L A G++ +V+ LL NG D ++ K RE+AL A G+++I
Sbjct: 26 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVK 84
Query: 285 ILKEHGV 291
+L + GV
Sbjct: 85 MLLDCGV 91
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 97 GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
G+ AA G + V++ L++ A P+LL +AL A S+G+ ++VK LL+ G
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGRESALSLACSKGYTDIVKMLLDCG 90
Query: 155 STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
+ NG T L A H++ VK LL + D G ++ +AV
Sbjct: 91 VDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 141
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 37/162 (22%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
D T L A++ G + VV+FLL+ G+ + + ++AL A G+ +IVK LL
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDC 89
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
V +N D G + L A V+
Sbjct: 90 -----------------------------------GVDVNEYDWNGGTPLLYAVHGNHVK 114
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
V+ LL +G D + S ++D A G+ + +++ H
Sbjct: 115 CVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 155
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
L A+ G + V+ L+ G+ + +G T LH AAR GHLEIV+ LL K V
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNA 63
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKV 221
DK G+TA +++ + +L + L K
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258
G+ L A GQ E+ ++ +N D G + LH+A R+G ++IV+ LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 259 DKAVINKSRETALDTAEKTGHSEIGVILKE 288
D +K +TA D + G+ ++ IL++
Sbjct: 60 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
AA+ G + ++ILM ++ D T LH A+ +GH+E+V+ LL+ G+ + +
Sbjct: 9 AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 164 NGKTALHSAARNGHLEIVKAL 184
GKTA + NG+ ++ + L
Sbjct: 68 -GKTAFDISIDNGNEDLAEIL 87
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
L AA G D VR I + + K ++GY H+AA++G LE++++L++A + +
Sbjct: 6 LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 62
Query: 126 TFDSSNTTALHTASSQGHVEVVKFL 150
D TA + G+ ++ + L
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 284
+IN D +G + L A G++ +V+ LL NG D ++ K RE+AL A G+++I
Sbjct: 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVK 86
Query: 285 ILKEHGV 291
+L + GV
Sbjct: 87 MLLDCGV 93
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 97 GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
G+ AA G + V++ L++ A P+LL +AL A S+G+ ++VK LL+ G
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 155 STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
+ NG T L A H++ VK LL + D G ++ +AV
Sbjct: 93 VDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 143
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 37/171 (21%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
D T L A++ G + VV+FLL+ G+ + + ++AL A G+ +IVK LL
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDC 91
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
V +N D G + L A V+
Sbjct: 92 -----------------------------------GVDVNEYDWNGGTPLLYAVHGNHVK 116
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK 298
V+ LL +G D + S ++D A G+ + +++ H + ++IK
Sbjct: 117 CVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE 188
+ + + LH A GH+ VK LL+ G+ + + ++ T L +A +G + V LL
Sbjct: 90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT-ADWHTPLFNACVSGSWDCVNLLLQH- 147
Query: 189 PGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQI 248
G ++ + + +H A + +E V+ L+ I + + G + L++A +
Sbjct: 148 -GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRAC 205
Query: 249 VQKLLNINGVDKAVIN--KSRETALDTAEKTGHSEIGVILKEHGV 291
V+KLL +G D +N K +++ L +T E+ +L + G
Sbjct: 206 VKKLLE-SGAD---VNQGKGQDSPLHAVVRTASEELACLLMDFGA 246
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
H A G L +KIL++ ++ + T L A G + V LL+ G+++
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP- 153
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
S+ + +H AAR GH+E V +L++ I + G T L++A + Q V +L++
Sbjct: 154 -ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLE 211
Query: 221 VEPVIINMVDAKG-NSALHIATRKGRVQIVQKLLNINGVDKAVIN 264
++ KG +S LH R ++ L++ G D N
Sbjct: 212 SG---ADVNQGKGQDSPLHAVVRTASEELACLLMDF-GADTQAKN 252
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 127 FDSSNTTALH-TASSQGHVEVV--KFLLEKGSTLAT--IARSN-----GKTALHSAARNG 176
D + TAL A ++G +V K L+EKG+ + AR + G+TALH AA+
Sbjct: 231 LDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290
Query: 177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA 236
+ IVK L+ ++ + D+ G+T + +A + IE+V L++ + + VDA ++A
Sbjct: 291 NXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ-QGASVEAVDATDHTA 349
Query: 237 LHIATRKGRVQIV 249
+A IV
Sbjct: 350 RQLAQANNHHNIV 362
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 127 FDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR--SNGKTALHSAARN-GHLEIVKA 183
++ S +ALH A++ + L I NG TAL A N G ++ A
Sbjct: 195 YNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASA 254
Query: 184 LLSKEPGIVLRNDK---------KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
L E G + D KG+TALH A + + +V LV + + D G
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK 314
Query: 235 SALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 282
+ + +A ++GR+++V L+ G ++ + TA A+ H I
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQ-QGASVEAVDATDHTARQLAQANNHHNI 361
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 16/215 (7%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL-- 185
D T L A +V +L + G+ TI + ++ALH AA N L
Sbjct: 163 DCDENTPLXLAVLARRRRLVAYLXKAGAD-PTIYNKSERSALHQAAANRDFGXXVYXLNS 221
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIE-------LVDELVKVEPVIINMVDA---KGNS 235
+K G + D+ G TAL + + + LV++ KV+ D+ KG +
Sbjct: 222 TKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT 281
Query: 236 ALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK 295
ALH A + IV+ L+ G +K ++ +T + A + G E+ L + G +
Sbjct: 282 ALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV-E 340
Query: 296 SIKPQANSARELKQAVSDIKHEVHDQLEHTRETRK 330
++ ++AR+L QA + H + D + R R+
Sbjct: 341 AVDATDHTARQLAQA--NNHHNIVDIFDRCRPERE 373
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 4/161 (2%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
DS N T L A G + L+E L G TAL A +N L I + LLSK
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
+ + D G+T L ++ E+ L++ +N + +G + L +A++ GR +
Sbjct: 91 GSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSE 148
Query: 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
IV+KLL + G D + + + TA +A G E+ I E
Sbjct: 149 IVKKLLEL-GADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 33 TGSVELVLDMISSYGDM-----ELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDT 87
+G L+ +I Y +M E ++ N GET L VA++YG ++V++++
Sbjct: 100 SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG-- 157
Query: 88 SLAGIKARN--GYDAFHIAAKQGCLEVLKILME 118
A I AR+ G A A G EV+KI E
Sbjct: 158 --ADISARDLTGLTAEASARIFGRQEVIKIFTE 188
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 28/193 (14%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
D N +H A+ +G + V+ L+E G + TI G TALH A + G ++ K L S
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELV-------KVEPVIINMVD---------- 230
L + GQ +H+AV +LV LV + ++N D
Sbjct: 76 GEVHSLWH---GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSH 132
Query: 231 ---AKGNSALHIATRKG--RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285
KG +ALH G ++ ++ L+ + G +K+ ET L A + + E +
Sbjct: 133 VKHCKGQTALHWCVGLGPEYLEXIKILVQL-GASPTAKDKADETPLXRAXEFRNRE-ALD 190
Query: 286 LKEHGVPCGKSIK 298
L VP S++
Sbjct: 191 LXXDTVPSKSSLR 203
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 34/211 (16%)
Query: 57 KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG-IKARNGYDAFHIAAKQGCLEVLKI 115
K + ++VAA G D VR +I +T ++ I+ R G A H+A K GC++ K
Sbjct: 15 KSDDENXEKIHVAARKGQTDEVRRLI---ETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71
Query: 116 LMEALPELLMTFDSSNTTALHTASSQGH--VEVVKFLLEKGSTLAT-------------- 159
L ++ E+ + L +++ V +V+ E+G +
Sbjct: 72 LA-SVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIG 130
Query: 160 --IARSNGKTALHSAARNG--HLEIVKAL--LSKEPGIVLRNDKKGQTALHMAVKGQSIE 213
+ G+TALH G +LE +K L L P DK +T L A + ++ E
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTA---KDKADETPLXRAXEFRNRE 187
Query: 214 LVDELVKVEP----VIINMVDAKGNSALHIA 240
+D P + ++ + +GNS LH A
Sbjct: 188 ALDLXXDTVPSKSSLRLDYANKQGNSHLHWA 218
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
D+S T+ +H A+ G ++ +K L+E G+ + + S G +H A R GH +V + L+
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNAL-DSTGSLPIHLAIREGHSSVV-SFLAP 130
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
E + R D G T L +A + + L+D L
Sbjct: 131 ESDLHHR-DASGLTPLELARQRGAQNLMDIL 160
Score = 32.0 bits (71), Expect = 1.00, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK--EPGIV 192
L A+++G V+ V+ LL + GKTAL G + LL + P +
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSPAVALELLKQGASPNV- 71
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
D G + +H A + ++ + LV+ +N +D+ G+ +H+A R+G +V L
Sbjct: 72 --QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
+ + + S T L+ A + G + IL+ H
Sbjct: 129 APESDLHHR--DASGLTPLELARQRGAQNLMDILQGH 163
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 77/206 (37%), Gaps = 37/206 (17%)
Query: 84 YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH 143
Y SL R G A H+AA + K L+EA + + D+ T LH A S
Sbjct: 44 YQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADA 102
Query: 144 VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTAL 203
V + L+ +T +G T L AAR
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAAR----------------------------- 133
Query: 204 HMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVI 263
+AV+G +L++ V N VD G SALH A V LL NG +K +
Sbjct: 134 -LAVEGMLEDLINSHADV-----NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQ 186
Query: 264 NKSRETALDTAEKTGHSEIGVILKEH 289
N ET L A + G E +L +H
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDH 212
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
D+S T+ +H A+ G ++ +K L+E G+ + + S G +H A R GH +V + L+
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNAL-DSTGSLPIHLAIREGHSSVV-SFLAP 128
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
E + R D G T L +A + + L+D L
Sbjct: 129 ESDLHHR-DASGLTPLELARQRGAQNLMDIL 158
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK--EPGIV 192
L A+++G V+ V+ LL + GKTAL G + LL + P +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSPAVALELLKQGASPNV- 69
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252
D G + +H A + ++ + LV+ +N +D+ G+ +H+A R+G +V L
Sbjct: 70 --QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
Query: 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289
+ + + S T L+ A + G + IL+ H
Sbjct: 127 APESDLHHR--DASGLTPLELARQRGAQNLMDILQGH 161
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G H AA G LE+L+ L+ ++ D + T L +A +GHV VK LL KG+
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALL 185
T+ +G TAL + + +KALL
Sbjct: 94 -KTVKGPDGLTALEATDN----QAIKALL 117
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
LH A+ G +E+++FLL KG+ + + + T L SA GH+ VK LLSK ++
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHH-ITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Query: 195 NDKKGQTALHMAVKGQSIE 213
G TAL A Q+I+
Sbjct: 98 G-PDGLTALE-ATDNQAIK 114
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
AR N L AA G LE+V+ + KE + +++G TALH A+ G + +VD L+
Sbjct: 17 ARLNPLVLLLDAALTGELEVVQQAV-KEMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75
Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAE--KTG 278
+N D+ G + LH A I L+ A TA + + + G
Sbjct: 76 AG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG 134
Query: 279 HSEIGVILKE 288
+++ L +
Sbjct: 135 YADCATYLAD 144
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
TALH A + +V FL+ G+ + + S+G T LH AA I AL+ I
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNS-PDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114
Query: 193 LRNDKKGQTAL 203
G TA
Sbjct: 115 ATTLSDGATAF 125
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
G H AA G LE+L+ L+ ++ D + T L +A +GHV VK LL KG+
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALL 185
T+ +G TA + + +KALL
Sbjct: 99 -KTVKGPDGLTAFEATDN----QAIKALL 122
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
LH A+ G +E+++FLL KG+ + + + T L SA GH+ VK LLSK
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHH-ITPLLSAVYEGHVSCVKLLLSK 95
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
+ AA++ + L L+E + D + TAL + G + V+ L E G+ L
Sbjct: 49 WWTAARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 206
G TALH AA E+V+AL+ I + D++G TAL +A
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELA 151
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE 188
S T TA+ + + + LLE A NG+TAL A G + V+ L
Sbjct: 43 SEYETPWWTAARKADEQALSQLLEDRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAG 100
Query: 189 PGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
+ R+ + G TALHMA E+V+ LV++ I + D +G +AL +A
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELA 151
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
NG A A G + +++L EA +L TALH A+ EVV+ L+E G+
Sbjct: 76 NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135
Query: 156 TLATIARSNGKTALHSA 172
+ + G TAL A
Sbjct: 136 DI-EVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
D + TAL + G + V+ L E G+ L G TALH AA E+V+AL+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 188 EPGIVLRNDKKGQTALHMA 206
I + D++G TAL +A
Sbjct: 133 GADIEV-EDERGLTALELA 150
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE 188
S T TA+ + + + LLE A NG+TAL A G + V+ L
Sbjct: 42 SEYETPWWTAARKADEQALSQLLEDRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAG 99
Query: 189 PGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
+ R+ + G TALHMA E+V+ LV++ I + D +G +AL +A
Sbjct: 100 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELA 150
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
NG A A G + +++L EA +L TALH A+ EVV+ L+E G+
Sbjct: 75 NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 134
Query: 156 TLATIARSNGKTALHSA 172
+ + G TAL A
Sbjct: 135 DI-EVEDERGLTALELA 150
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 53 EMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCL 110
E L N G+TAL++AA G V ++ + AG+ R G+ A H+A +
Sbjct: 36 EYLDLQNDLGQTALHLAAILGEASTVEKLY----AAGAGVLVAERGGHTALHLACRVRAH 91
Query: 111 EVLKILMEALPE---------LLMTFDSSNTTALHTAS--SQGHVEVVKFLLEKGSTLAT 159
+L++ P L + D + T+ A+ SQ + E + ++ L
Sbjct: 92 TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151
Query: 160 IARS-NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
A + +G T LH A + E+V+ L + G+T LH+AV+ Q+ +++ L
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 219 VKV 221
+K
Sbjct: 212 LKA 214
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 197 KKGQTALHMAVKGQSIELVDELVKVEP--VIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
+ G TALH+AV Q +D L+ +++ + G +ALH+A G V+KL
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY- 65
Query: 255 INGVDKAVINKSRETALDTAEKT-GHSEIGVILK 287
G V + TAL A + H+ V+L+
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 48 DMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQ 107
D + R L N G T L+VA + +MVR ++R L + G H+A +
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEA 202
Query: 108 GCLEVLKILMEA 119
VL++L++A
Sbjct: 203 QAASVLELLLKA 214
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 53 EMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCL 110
E L N G+TAL++AA G V ++ + AG+ R G+ A H+A +
Sbjct: 36 EYLDLQNDLGQTALHLAAILGEASTVEKLY----AAGAGVLVAERGGHTALHLACRVRAH 91
Query: 111 EVLKILMEALPE---------LLMTFDSSNTTALHTAS--SQGHVEVVKFLLEKGSTLAT 159
+L++ P L + D + T+ A+ SQ + E + ++ L
Sbjct: 92 TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151
Query: 160 IARS-NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
A + +G T LH A + E+V+ L + G+T LH+AV+ Q+ +++ L
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 219 VKV 221
+K
Sbjct: 212 LKA 214
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 197 KKGQTALHMAVKGQSIELVDELVKVEP--VIINMVDAKGNSALHIATRKGRVQIVQKLLN 254
+ G TALH+AV Q +D L+ +++ + G +ALH+A G V+KL
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY- 65
Query: 255 INGVDKAVINKSRETALDTAEKT-GHSEIGVILK 287
G V + TAL A + H+ V+L+
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 48 DMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQ 107
D + R L N G T L+VA + +MVR ++R L + G H+A +
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEA 202
Query: 108 GCLEVLKILMEA 119
VL++L++A
Sbjct: 203 QAASVLELLLKA 214
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 102 HIAAKQGCLEVLKILM-EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
H AA +++KIL+ L + FD TAL+ A G+ + VK ++K L
Sbjct: 67 HQAATLEDTKIVKILLFSGLDD--SQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFY 124
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPG 190
++ KT+ + A + IV LS+ P
Sbjct: 125 GKTGWKTSFYHAVXLNDVSIVSYFLSEIPS 154
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 3/171 (1%)
Query: 111 EVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH 170
+V+ L+ EL T D + T+LH A+ + K LL+ G+ A + G+T LH
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLH 89
Query: 171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD 230
+A + + + LL + G T L +A + +V++L+ + IN D
Sbjct: 90 AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD-ADINAAD 148
Query: 231 AKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE 281
G +ALH A + V LL ++ ++ + ET L A + G E
Sbjct: 149 NSGKTALHWAAAVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYE 198
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
TPL R +V D+I++ D ++ + SG+TAL+ AA + V ++ +
Sbjct: 120 TPLILAARLAIEGMVEDLITADAD------INAADNSGKTALHWAAAVNNTEAVNILLMH 173
Query: 85 HDTSLAGIKARNGYD--AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
H A A++ D +AA++G E K L++ +T D + AS +
Sbjct: 174 H----ANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREIT-DHMDRLPRDVASERL 228
Query: 143 HVEVVKFLLE 152
H ++V+ L E
Sbjct: 229 HHDIVRLLDE 238
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 144 VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTAL 203
+V+ LL +G+ L G+T+LH AAR + K LL D G+T L
Sbjct: 30 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPL 88
Query: 204 HMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVI 263
H AV ++ + L++ +N G + L +A R +V+ L+ + D
Sbjct: 89 HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD-ADINAA 147
Query: 264 NKSRETALDTAEKTGHSE-IGVILKEH 289
+ S +TAL A ++E + ++L H
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHH 174
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 103 IAAKQGC---LEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST-LA 158
+AA GC L+ L +L+ + E++ + N A A+ GH+ V+ L E T +
Sbjct: 98 VAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIX 156
Query: 159 TIARSNGKTALHSAARNGHLEIVKALLSKEP 189
++ A AA NGHL ++ L P
Sbjct: 157 AXIQAENYHAFRLAAENGHLHVLNRLCELAP 187
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 203 LHMAVK---GQSIELVDELVKVEPVIINMVDAK---GNSALHIATRKGRVQIVQKLLNIN 256
LH+AVK S+ LVD +++ +DAK GN+ALH A + ++ LL
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNG----GHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 257 GVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
+ +N++ ETALD A K H E +L++
Sbjct: 250 AL-VGTVNEAGETALDIARKKHHKECEELLEQ 280
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 203 LHMAVK---GQSIELVDELVKVEPVIINMVDAK---GNSALHIATRKGRVQIVQKLLNIN 256
LH+AVK S+ LVD +++ +DAK GN+ALH A + ++ LL
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNG----GHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230
Query: 257 GVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
+ +N++ ETALD A K H E +L++
Sbjct: 231 AL-VGTVNEAGETALDIARKKHHKECEELLEQ 261
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 200 QTALHMAVKG---QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256
+TALH+AV+ S+ +VD LV+ ++ KG++ALH + ++ LL
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-G 227
Query: 257 GVDKAVINKSRETALDTAEKTGHSEIGVILKE 288
+ N+S ET LD A++ H +L +
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 116 LMEALPELLMTFDSSNTTALHTAS---SQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
L E +P L + TALH A + + +V FL++ L G TALH
Sbjct: 156 LTEKIP--LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYC 212
Query: 173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK 232
+ E +K LL + I + N+ G+T L +A + L E E ++ + +
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKR-----LKHE--HCEELLTQALSGR 264
Query: 233 GNSALHI 239
NS +H+
Sbjct: 265 FNSHVHV 271
>pdb|1KAE|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed
With L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAE|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed
With L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAH|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed
With L-histidine (product), Zn And Nad (cofactor)
pdb|1KAH|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed
With L-histidine (product), Zn And Nad (cofactor)
pdb|1KAR|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed
With Histamine (inhibitor), Zinc And Nad (cofactor)
pdb|1KAR|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed
With Histamine (inhibitor), Zinc And Nad (cofactor)
Length = 434
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 13 KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
+ ++QL + + +S+ RT V +LD + + GD LRE +K +++ TAL V+AE
Sbjct: 15 EQQRQLLXRPAISASESITRT--VNDILDNVKARGDEALREYSAKFDKTTVTALKVSAE 71
>pdb|1K75|A Chain A, The L-Histidinol Dehydrogenase (Hisd) Structure
Implicates Domain Swapping And Gene Duplication.
pdb|1K75|B Chain B, The L-Histidinol Dehydrogenase (Hisd) Structure
Implicates Domain Swapping And Gene Duplication
Length = 434
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 13 KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
+ ++QL + + +S+ RT V +LD + + GD LRE +K +++ TAL V+AE
Sbjct: 15 EQQRQLLXRPAISASESITRT--VNDILDNVKARGDEALREYSAKFDKTTVTALKVSAE 71
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 202 ALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKA 261
A +A++G +L++ V N VD G SALH A V LL NG +K
Sbjct: 22 AARLALEGMLEDLINSHADV-----NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKD 75
Query: 262 VINKSRETALDTAEKTGHSEIGVILKEH 289
+ N ET L A + G E +L +H
Sbjct: 76 MQNNKEETPLFLAAREGSYETAKVLLDH 103
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSN-------------GKTALHSAARNGHLE 179
TALH A + + +V L+E G+ + A + G+ L AA L
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 180 IVKALL--SKEPGIVLRNDKKGQTALHMAVK 208
IVK LL S +P + D G T LH V+
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVE 193
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 227 NMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTG 278
+M D++ NS LHI R+Q + K + + V ++ +R+ + T E G
Sbjct: 89 DMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENXG 140
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 29/150 (19%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSN------------GKTALHSAARNGHLEI 180
+ALH A + ++ VK L+E G+ + A G+ L AA ++
Sbjct: 97 SALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDV 156
Query: 181 VKALLSK--EPGIVLRNDKKGQTALHMAV-----KGQSIELV----DELVKVEPVIINMV 229
V LL +P + D +G T LH V ++I LV D L++ + V
Sbjct: 157 VSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTV 216
Query: 230 ------DAKGNSALHIATRKGRVQIVQKLL 253
+ + + L +A ++G+++I + +L
Sbjct: 217 QLEDIRNLQDLTPLKLAAKEGKIEIFRHIL 246
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSN------------GKTALHSAARNGHLEI 180
+ALH A + ++ VK L+E G+ + A G+ L AA ++
Sbjct: 105 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 164
Query: 181 VKALLSK--EPGIVLRNDKKGQTALHMAV---------KGQSIELVDELVKVEPVIINMV 229
V LL +P + D G T LH V I + D L+++ + V
Sbjct: 165 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 224
Query: 230 ------DAKGNSALHIATRKGRVQIVQKLL 253
+ +G + L +A ++G+++I + +L
Sbjct: 225 QLEEISNHQGLTPLKLAAKEGKIEIFRHIL 254
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSN------------GKTALHSAARNGHLEI 180
+ALH A + ++ VK L+E G+ + A G+ L AA ++
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151
Query: 181 VKALLSK--EPGIVLRNDKKGQTALHMAV---------KGQSIELVDELVKVEPVIINMV 229
V LL +P + D G T LH V I + D L+++ + V
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 211
Query: 230 ------DAKGNSALHIATRKGRVQIVQKLL 253
+ +G + L +A ++G+++I + +L
Sbjct: 212 QLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 51/204 (25%)
Query: 58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG-----------IKARNGYDAFHIAAK 106
+++ G T L+ +++V+ ++++ L G +K+ N YD+
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS------ 180
Query: 107 QGCLEVLKILMEALPELLMTFDSSNTTALH----TASSQGHVEVVKFLLE---------- 152
G E L ++ L L+ DS N T LH T+ G K+ L+
Sbjct: 181 -GTFEAL---LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236
Query: 153 ----KGSTLATIARSNGKTALHSAARNGHLE---IVKALLSKEPGIVLRNDKKGQTALHM 205
+ T ++ N K + +L+ I+ +L+ + D G T L++
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ-------DSNGDTCLNI 289
Query: 206 AVKGQSIELVDELVK--VEPVIIN 227
A + +I +VD L+ +P I N
Sbjct: 290 AARLGNISIVDALLDYGADPFIAN 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,043,930
Number of Sequences: 62578
Number of extensions: 457895
Number of successful extensions: 2429
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1402
Number of HSP's gapped (non-prelim): 432
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)