Query 009331
Match_columns 537
No_of_seqs 526 out of 2936
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 00:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 2.6E-41 8.9E-46 330.6 28.8 262 22-294 4-280 (285)
2 4g8k_A 2-5A-dependent ribonucl 100.0 1.1E-40 3.8E-45 335.6 27.0 264 17-294 19-328 (337)
3 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-39 4.1E-44 339.9 32.3 264 17-293 74-337 (437)
4 1n11_A Ankyrin; clathrin, BAND 100.0 2.2E-39 7.7E-44 337.8 31.8 270 16-298 7-276 (437)
5 3d9h_A CDNA FLJ77766, highly s 100.0 5.4E-40 1.8E-44 322.7 19.8 265 18-293 10-280 (285)
6 2fo1_E LIN-12 protein; beta-ba 100.0 4.9E-40 1.7E-44 335.7 17.7 263 16-292 87-371 (373)
7 3utm_A Tankyrase-1; tankyrase, 100.0 6.9E-38 2.3E-42 315.9 28.1 273 16-300 17-313 (351)
8 2xai_A ASB-9, ankyrin repeat a 100.0 1E-38 3.4E-43 309.5 21.0 250 22-287 2-258 (261)
9 3ljn_A Hypothetical protein; a 100.0 2.6E-39 8.8E-44 329.2 17.0 268 11-291 8-313 (364)
10 1yyh_A HN1;, notch 1, ankyrin 100.0 9.4E-38 3.2E-42 301.2 21.2 214 72-290 33-246 (253)
11 1k1a_A B-cell lymphoma 3-encod 100.0 1E-37 3.5E-42 297.9 20.6 233 55-291 2-240 (241)
12 1yyh_A HN1;, notch 1, ankyrin 100.0 2E-37 6.8E-42 298.9 21.2 231 16-256 3-246 (253)
13 1wdy_A 2-5A-dependent ribonucl 100.0 3.8E-36 1.3E-40 293.8 28.1 235 20-265 36-284 (285)
14 1oy3_D Transcription factor in 100.0 3.2E-37 1.1E-41 301.5 19.8 254 17-278 3-269 (282)
15 3aji_A 26S proteasome non-ATPa 100.0 1.2E-36 4E-41 288.9 22.6 227 60-292 4-230 (231)
16 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-35 3.8E-40 299.8 30.1 259 17-292 52-334 (351)
17 3b7b_A Euchromatic histone-lys 100.0 2.6E-36 8.9E-41 287.6 24.1 224 56-285 5-228 (237)
18 3b7b_A Euchromatic histone-lys 100.0 4.2E-36 1.4E-40 286.2 24.4 228 16-254 4-231 (237)
19 2dzn_A Probable 26S proteasome 100.0 6.6E-36 2.3E-40 283.0 24.6 221 62-288 2-226 (228)
20 3ljn_A Hypothetical protein; a 100.0 1.9E-36 6.6E-41 307.9 22.0 231 56-293 14-270 (364)
21 2xai_A ASB-9, ankyrin repeat a 100.0 4.1E-36 1.4E-40 291.1 23.1 222 61-293 2-223 (261)
22 3aji_A 26S proteasome non-ATPa 100.0 4E-36 1.4E-40 285.2 22.3 228 19-258 2-229 (231)
23 1k1a_A B-cell lymphoma 3-encod 100.0 2.6E-36 8.7E-41 288.2 20.2 229 17-255 3-238 (241)
24 3d9h_A CDNA FLJ77766, highly s 100.0 5.4E-36 1.8E-40 294.2 22.2 230 17-262 53-282 (285)
25 2dzn_A Probable 26S proteasome 100.0 9.3E-36 3.2E-40 281.9 21.1 222 23-254 2-226 (228)
26 3eu9_A Huntingtin-interacting 100.0 2.7E-35 9.1E-40 280.5 22.9 231 57-293 4-236 (240)
27 4g8k_A 2-5A-dependent ribonucl 100.0 4.3E-35 1.5E-39 294.8 23.8 232 59-294 22-300 (337)
28 3kea_A K1L; tropism, ANK repea 100.0 2.3E-35 7.7E-40 289.7 18.7 243 30-296 6-250 (285)
29 4b93_B Ankyrin repeat domain-c 100.0 4.9E-36 1.7E-40 291.6 13.0 217 58-279 7-230 (269)
30 2fo1_E LIN-12 protein; beta-ba 100.0 4.7E-35 1.6E-39 298.7 20.0 232 17-258 118-370 (373)
31 1oy3_D Transcription factor in 100.0 7.8E-35 2.7E-39 284.6 20.1 240 56-298 3-256 (282)
32 1s70_B 130 kDa myosin-binding 100.0 2.3E-35 7.9E-40 291.3 16.4 248 21-288 38-286 (299)
33 4b93_B Ankyrin repeat domain-c 100.0 1.4E-35 4.8E-40 288.4 14.5 222 18-245 6-230 (269)
34 3eu9_A Huntingtin-interacting 100.0 3.1E-34 1.1E-38 273.0 23.4 231 18-259 4-235 (240)
35 2f8y_A Notch homolog 1, transl 100.0 3.2E-34 1.1E-38 270.5 20.5 217 73-294 2-218 (223)
36 2f8y_A Notch homolog 1, transl 100.0 9.8E-34 3.3E-38 267.2 19.9 215 34-259 2-216 (223)
37 3kea_A K1L; tropism, ANK repea 100.0 2.8E-33 9.7E-38 274.7 16.8 226 16-264 24-251 (285)
38 3hra_A Ankyrin repeat family p 100.0 4.4E-32 1.5E-36 251.5 21.9 193 96-290 4-201 (201)
39 1ikn_D Protein (I-kappa-B-alph 100.0 5E-34 1.7E-38 271.9 8.8 215 58-275 4-227 (236)
40 1s70_B 130 kDa myosin-binding 100.0 2.1E-33 7.2E-38 277.2 13.0 256 29-297 4-262 (299)
41 2rfa_A Transient receptor pote 100.0 1.1E-31 3.7E-36 254.9 21.6 208 61-293 2-223 (232)
42 2rfa_A Transient receptor pote 100.0 1.1E-31 3.8E-36 254.8 20.5 175 96-294 2-185 (232)
43 1ikn_D Protein (I-kappa-B-alph 100.0 6.8E-33 2.3E-37 264.0 11.2 202 92-296 3-213 (236)
44 1sw6_A Regulatory protein SWI6 100.0 8.1E-33 2.8E-37 277.0 11.2 243 17-278 46-327 (327)
45 3hra_A Ankyrin repeat family p 100.0 9.6E-31 3.3E-35 242.4 22.8 192 60-254 3-199 (201)
46 2pnn_A Transient receptor pote 100.0 1.4E-31 4.7E-36 260.9 13.3 214 56-291 7-257 (273)
47 2etb_A Transient receptor pote 100.0 3.3E-31 1.1E-35 255.6 15.1 207 61-292 1-246 (256)
48 2pnn_A Transient receptor pote 100.0 3.1E-31 1.1E-35 258.4 12.6 183 91-294 7-220 (273)
49 2etb_A Transient receptor pote 100.0 2.6E-30 8.9E-35 249.3 17.4 204 22-255 1-243 (256)
50 4gpm_A Engineered protein OR26 100.0 1.8E-29 6.1E-34 227.2 19.5 157 133-293 6-162 (169)
51 1sw6_A Regulatory protein SWI6 100.0 4.9E-31 1.7E-35 264.1 6.8 252 21-297 21-313 (327)
52 4gpm_A Engineered protein OR26 100.0 5.8E-29 2E-33 223.9 19.5 159 99-262 6-164 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 2.2E-30 7.5E-35 250.3 10.9 213 59-293 2-251 (260)
54 4hbd_A KN motif and ankyrin re 100.0 2.3E-29 7.9E-34 245.7 14.8 189 99-289 78-272 (276)
55 3jxi_A Vanilloid receptor-rela 100.0 3.2E-29 1.1E-33 242.1 14.5 204 20-255 2-247 (260)
56 4hbd_A KN motif and ankyrin re 100.0 1.8E-28 6.3E-33 239.3 16.3 197 60-258 74-275 (276)
57 3v30_A DNA-binding protein rfx 100.0 7.5E-28 2.6E-32 217.3 16.9 170 97-270 2-171 (172)
58 2rfm_A Putative ankyrin repeat 99.9 1.6E-27 5.6E-32 219.3 16.3 161 126-290 30-190 (192)
59 2aja_A Ankyrin repeat family p 99.9 4E-30 1.4E-34 260.7 -2.6 156 22-189 91-249 (376)
60 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.2E-26 4.1E-31 208.9 18.1 158 129-290 12-169 (169)
61 3v31_A Ankyrin repeat family A 99.9 6.1E-27 2.1E-31 210.3 15.9 158 131-292 3-160 (167)
62 2rfm_A Putative ankyrin repeat 99.9 1.4E-26 4.8E-31 213.0 17.9 157 94-254 32-188 (192)
63 3v30_A DNA-binding protein rfx 99.9 8E-27 2.8E-31 210.6 15.8 161 131-294 2-162 (172)
64 1ihb_A P18-INK4C(INK6), cyclin 99.9 8.1E-27 2.8E-31 208.2 15.3 154 133-291 7-161 (162)
65 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.4E-26 4.7E-31 206.7 15.9 159 96-259 4-162 (162)
66 3v31_A Ankyrin repeat family A 99.9 4.1E-26 1.4E-30 204.8 18.0 154 97-254 3-156 (167)
67 3twr_A Tankyrase-2; ankyrin re 99.9 1.1E-26 3.9E-31 208.0 13.8 160 128-291 5-164 (165)
68 2y1l_E Darpin-8.4; hydrolase-i 99.9 7E-26 2.4E-30 203.9 18.4 154 97-254 14-167 (169)
69 3f6q_A Integrin-linked protein 99.9 2.8E-26 9.6E-31 208.5 15.4 162 131-295 5-166 (179)
70 2aja_A Ankyrin repeat family p 99.9 1.5E-28 5E-33 249.2 0.3 223 58-290 88-342 (376)
71 3f6q_A Integrin-linked protein 99.9 3.8E-26 1.3E-30 207.7 15.8 169 95-267 3-171 (179)
72 1awc_B Protein (GA binding pro 99.9 7.2E-26 2.5E-30 200.2 16.6 149 133-286 4-152 (153)
73 2vge_A RELA-associated inhibit 99.9 1.5E-29 5.3E-34 239.7 -7.7 201 79-286 2-207 (229)
74 2vge_A RELA-associated inhibit 99.9 1E-28 3.5E-33 234.1 -2.4 204 39-253 1-208 (229)
75 1awc_B Protein (GA binding pro 99.9 9E-26 3.1E-30 199.6 16.6 149 99-252 4-152 (153)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.1E-25 3.9E-30 199.5 16.6 151 99-254 4-154 (156)
77 3twr_A Tankyrase-2; ankyrin re 99.9 3.4E-26 1.2E-30 205.0 13.0 157 94-254 5-161 (165)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.4E-25 1.2E-29 196.4 16.7 154 131-289 2-155 (156)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 9.4E-26 3.2E-30 215.2 5.9 179 61-245 4-193 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-25 3.7E-30 214.7 5.9 179 95-279 3-193 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 2.3E-23 8E-28 184.8 10.8 142 128-274 9-151 (156)
82 3t8k_A Uncharacterized protein 99.9 1E-23 3.6E-28 192.7 7.0 40 248-287 135-174 (186)
83 3t8k_A Uncharacterized protein 99.9 3.3E-23 1.1E-27 189.3 10.1 155 97-255 6-176 (186)
84 1d9s_A Cyclin-dependent kinase 99.9 7.2E-23 2.5E-27 177.1 11.5 128 160-291 7-135 (136)
85 1d9s_A Cyclin-dependent kinase 99.9 1.3E-22 4.3E-27 175.6 11.4 126 128-258 9-135 (136)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 1.2E-22 4.1E-27 180.2 10.1 140 94-238 9-149 (156)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.1E-21 3.6E-26 166.6 14.6 125 165-292 2-126 (126)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.2E-21 7.7E-26 164.6 15.2 125 61-189 1-125 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 8.8E-22 3E-26 170.2 12.9 123 165-290 14-136 (136)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 1.3E-21 4.4E-26 169.2 12.8 126 59-188 11-136 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.8 9.5E-22 3.2E-26 170.2 7.7 128 160-290 5-132 (137)
92 3deo_A Signal recognition part 99.8 2.1E-21 7.3E-26 176.9 9.4 140 59-220 41-180 (183)
93 3deo_A Signal recognition part 99.8 2.6E-21 8.8E-26 176.4 9.5 140 94-254 41-180 (183)
94 3ui2_A Signal recognition part 99.8 2.5E-21 8.4E-26 185.1 9.3 137 97-254 45-181 (244)
95 3ui2_A Signal recognition part 99.8 1E-20 3.5E-25 180.7 11.6 144 128-292 42-185 (244)
96 3c5r_A BARD-1, BRCA1-associate 99.8 4E-21 1.4E-25 166.2 7.2 125 58-186 6-130 (137)
97 1dcq_A PYK2-associated protein 99.8 7.1E-20 2.4E-24 178.3 14.2 195 93-293 62-264 (278)
98 2b0o_E UPLC1; arfgap, structur 99.8 5E-20 1.7E-24 181.5 12.8 143 129-280 149-299 (301)
99 2b0o_E UPLC1; arfgap, structur 99.8 1.2E-19 4.2E-24 178.7 15.4 125 166-292 152-284 (301)
100 3aaa_C Myotrophin, protein V-1 99.8 1.3E-19 4.4E-24 153.6 13.4 109 163-274 5-113 (123)
101 3aaa_C Myotrophin, protein V-1 99.8 5.3E-20 1.8E-24 156.0 10.2 113 128-243 4-116 (123)
102 3ehr_A Osteoclast-stimulating 99.8 2.4E-20 8E-25 175.4 8.6 130 162-293 70-199 (222)
103 3ehr_A Osteoclast-stimulating 99.8 2.2E-20 7.7E-25 175.6 8.1 136 128-267 70-206 (222)
104 1dcq_A PYK2-associated protein 99.8 6.3E-19 2.1E-23 171.6 13.6 193 58-258 62-262 (278)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.3E-18 7.9E-23 138.1 11.3 93 198-292 1-93 (93)
106 3jue_A Arfgap with coiled-coil 99.8 3.2E-18 1.1E-22 172.6 12.8 145 130-277 198-347 (368)
107 3jue_A Arfgap with coiled-coil 99.7 4.8E-18 1.6E-22 171.3 12.4 147 94-243 196-347 (368)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.7 8.7E-18 3E-22 134.7 11.3 91 62-155 2-92 (93)
109 3lvq_E ARF-GAP with SH3 domain 99.7 7.5E-18 2.6E-22 177.9 14.2 130 131-263 132-269 (497)
110 3lvq_E ARF-GAP with SH3 domain 99.7 1.3E-17 4.3E-22 176.2 13.6 128 166-295 133-268 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.7 9.3E-18 3.2E-22 140.2 8.8 107 161-270 5-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.7 3.8E-17 1.3E-21 136.5 8.9 106 128-236 6-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.6 1.3E-15 4.6E-20 126.0 9.3 92 193-286 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 3.6E-15 1.2E-19 123.4 9.4 93 55-150 17-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 65.2 7.7 0.00026 37.8 5.6 189 58-248 69-268 (351)
116 3gvo_A Pumilio 2, pumilio homo 61.6 21 0.0007 34.7 7.9 193 16-213 66-267 (351)
117 2l2t_A Receptor tyrosine-prote 58.4 10 0.00036 24.3 3.3 27 467-493 8-34 (44)
118 3k49_A MRNA-binding protein PU 51.1 33 0.0011 33.5 7.4 195 58-254 74-285 (369)
119 3k49_A MRNA-binding protein PU 50.7 48 0.0016 32.3 8.5 200 16-220 71-285 (369)
120 2ks1_B Epidermal growth factor 47.0 9 0.00031 24.7 1.6 25 469-493 11-35 (44)
121 2knc_B Integrin beta-3; transm 46.1 41 0.0014 24.7 5.4 27 468-494 10-36 (79)
122 2jwa_A Receptor tyrosine-prote 40.1 45 0.0015 21.4 4.1 9 469-477 12-20 (44)
123 2iub_A CORA, divalent cation t 35.7 1.6E+02 0.0055 28.4 9.6 28 342-369 294-321 (363)
124 4ev6_A Magnesium transport pro 33.7 1.5E+02 0.0052 28.2 9.0 22 347-368 275-296 (339)
125 2k9j_B Integrin beta-3; transm 32.7 96 0.0033 19.7 5.1 28 467-494 8-35 (43)
126 4ev6_A Magnesium transport pro 31.2 2.2E+02 0.0074 27.1 9.6 23 439-461 279-301 (339)
127 3zrh_A Ubiquitin thioesterase 28.3 1.2E+02 0.004 29.8 6.8 20 30-49 29-48 (454)
128 3mkq_B Coatomer subunit alpha; 23.6 3.4E+02 0.012 23.1 8.6 134 21-186 6-139 (177)
129 2l8s_A Integrin alpha-1; trans 22.1 1.2E+02 0.0042 20.3 4.0 19 467-485 8-26 (54)
130 2knc_A Integrin alpha-IIB; tra 21.7 90 0.0031 21.0 3.3 19 467-485 11-29 (54)
131 3arc_F Cytochrome B559 subunit 20.3 88 0.003 19.5 2.7 24 467-490 18-41 (44)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-41 Score=330.60 Aligned_cols=262 Identities=26% Similarity=0.352 Sum_probs=238.3
Q ss_pred CCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcc-cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChH
Q 009331 22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKM-NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA 100 (537)
Q Consensus 22 ~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~-~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 100 (537)
+|.||||.|++.|+.+++++|++.+.+. +.. +..|.||||+|+..|+.+++++|++.+. +.+..+..|.||
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~ 75 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANV------NFQEEEGGWTPLHNAVQMSREDIVELLLRHGA--DPVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTCCCH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCc------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCH
Confidence 5789999999999999999999998764 333 7789999999999999999999999874 456678899999
Q ss_pred HHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCccccc---------ccCCCcHHHH
Q 009331 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA---------RSNGKTALHS 171 (537)
Q Consensus 101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~---------~~~g~tpL~~ 171 (537)
||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|+++|+++.... +..|.||||.
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~ 154 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHH
Confidence 99999999999999999999887644 8899999999999999999999999998874321 6789999999
Q ss_pred HHHCCcHHHHHHHHhc-CCCCcccCCCCCChHHHHHHhcCC----HHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcH
Q 009331 172 AARNGHLEIVKALLSK-EPGIVLRNDKKGQTALHMAVKGQS----IELVDELVKVEPVIINMVDAKGNSALHIATRKGRV 246 (537)
Q Consensus 172 A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~ 246 (537)
|+..|+.+++++|++. +.+ ....|..|.||||.|+..++ .+++++|++ .+.+++.+|..|+||||+|+..|+.
T Consensus 155 A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~ 232 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHL 232 (285)
T ss_dssp HHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 9999999999999998 555 45568999999999999999 999999999 5677899999999999999999999
Q ss_pred HHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCC
Q 009331 247 QIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG 294 (537)
Q Consensus 247 ~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~ 294 (537)
+++++|++..|++++.+|..|.|||++|+..++.+++++|+++|+++.
T Consensus 233 ~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred HHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 999999997899999999999999999999999999999999999864
No 2
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.1e-40 Score=335.61 Aligned_cols=264 Identities=25% Similarity=0.329 Sum_probs=195.5
Q ss_pred hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHccc-CCCCcHHHHHHHcCCHHHHHHHHHhCCcc-------
Q 009331 17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMN-QSGETALYVAAEYGYVDMVREMIRYHDTS------- 88 (537)
Q Consensus 17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~-~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~------- 88 (537)
...+.+|.|+||.||+.|++++|+.||++|.++ +.++ ..|.||||+|+..|+.++|++|++++...
T Consensus 19 ~~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadv------n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~ 92 (337)
T 4g8k_A 19 RRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANV------NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 92 (337)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCC------CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCC
Confidence 344556889999999999999999999999875 3334 45999999999999999999999987532
Q ss_pred ------------------------cccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhh---------cCCCCCChHH
Q 009331 89 ------------------------LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM---------TFDSSNTTAL 135 (537)
Q Consensus 89 ------------------------~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~---------~~d~~g~tpL 135 (537)
+.+..+..|.||||.|+..|+.+++++|++.+.++.. ..+..|.|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L 172 (337)
T 4g8k_A 93 ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 172 (337)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred CchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence 2334566677788888888888888887777665421 2245577788
Q ss_pred HHHHhCCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHCCc----HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331 136 HTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGH----LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210 (537)
Q Consensus 136 h~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 210 (537)
|+|+..|+.+++++|+++ |+++ +..|..|.||++.++..+. .+++++|++++.++.. .|..|+||||+|+..|
T Consensus 173 ~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~-~d~~g~t~L~~a~~~~ 250 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKK 250 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC-CCGGGCCHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhh
Confidence 888888888888877754 6665 5567777777776664332 3567777777777543 4677778888888888
Q ss_pred CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290 (537)
Q Consensus 211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g 290 (537)
+.++++.|++..+.++|.+|.+|+||||+|+..|+.+++++|++ .|++++.. +||++|+..|+.+++++|+++|
T Consensus 251 ~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~G 324 (337)
T 4g8k_A 251 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNYDHSLVKVLLSHG 324 (337)
T ss_dssp CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTT
T ss_pred hhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCc
Confidence 88888877776677777778888888888888888888888877 57776543 4788888888888888888888
Q ss_pred CCCC
Q 009331 291 VPCG 294 (537)
Q Consensus 291 a~~~ 294 (537)
|++.
T Consensus 325 A~~d 328 (337)
T 4g8k_A 325 AKED 328 (337)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7764
No 3
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-39 Score=339.90 Aligned_cols=264 Identities=26% Similarity=0.387 Sum_probs=146.5
Q ss_pred hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331 17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN 96 (537)
Q Consensus 17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 96 (537)
+..+.+|.||||+|++.|+.+++++|++.+.++ +..+..|.||||+|+..|+.++|++|++.+. .....+..
T Consensus 74 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~ 145 (437)
T 1n11_A 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP------NLATTAGHTPLHIAAREGHVETVLALLEKEA--SQACMTKK 145 (437)
T ss_dssp SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTT
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--CCcCCCCC
Confidence 446678889999999999999999999888653 3345566666666666666666666666542 22334555
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG 176 (537)
Q Consensus 97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 176 (537)
|.||||.|+..|+.+++++|++.+.+.... +..|.||||+|+..|+.+++++|++++.++ ...+.+|.||||+|+..|
T Consensus 146 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 223 (437)
T 1n11_A 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQN 223 (437)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 666666666666666666666665544332 455555555555555555555555555544 333444555555555555
Q ss_pred cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc
Q 009331 177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256 (537)
Q Consensus 177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 256 (537)
+.+++++|++.+.+.. ..+..|.||||.|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|++ .
T Consensus 224 ~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~ 300 (437)
T 1n11_A 224 QVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-H 300 (437)
T ss_dssp CHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-C
Confidence 5555555555544432 223444555555555555555555544 233344444444444444444444444444444 3
Q ss_pred CCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331 257 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 293 (537)
Q Consensus 257 g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~ 293 (537)
|++++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 337 (437)
T 1n11_A 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 4444444444444444444444444444444444443
No 4
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.2e-39 Score=337.83 Aligned_cols=270 Identities=26% Similarity=0.334 Sum_probs=238.6
Q ss_pred hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCC
Q 009331 16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR 95 (537)
Q Consensus 16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 95 (537)
.+..+..|.||||+|+..|+.++|++|++++.++ +..+..|.||||+|+..|+.++|++|++.+. +.+..+.
T Consensus 7 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~ 78 (437)
T 1n11_A 7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP------NVSNVKVETPLHMAARAGHTEVAKYLLQNKA--KVNAKAK 78 (437)
T ss_dssp --------CCHHHHHHHHTCHHHHHHHHHTTCCS------CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC--CSSCCCT
T ss_pred ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC--CCCCCCC
Confidence 3467889999999999999999999999998764 4568899999999999999999999999874 4566788
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC
Q 009331 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN 175 (537)
Q Consensus 96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 175 (537)
.|.||||+|+..|+.+++++|++.+++.... +..|.||||+|+..|+.+++++|++++.+. ...+..|.||||.|+..
T Consensus 79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~ 156 (437)
T 1n11_A 79 DDQTPLHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKY 156 (437)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHc
Confidence 9999999999999999999999999886644 889999999999999999999999999886 55678899999999999
Q ss_pred CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhh
Q 009331 176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255 (537)
Q Consensus 176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 255 (537)
|+.+++++|++++.++.. .+..|.||||.|+..|+.+++++|++. +..++..+.+|.||||+|+..|+.+++++|++
T Consensus 157 g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~- 233 (437)
T 1n11_A 157 GKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ- 233 (437)
T ss_dssp TCHHHHHHHHHTTCCTTC-CCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-
T ss_pred CCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence 999999999999988654 478999999999999999999999994 55678889999999999999999999999998
Q ss_pred cCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCC
Q 009331 256 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK 298 (537)
Q Consensus 256 ~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~ 298 (537)
.|++++..+..|.|||++|+..|+.+++++|+++|++......
T Consensus 234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 276 (437)
T 1n11_A 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276 (437)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999988755433
No 5
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=322.73 Aligned_cols=265 Identities=20% Similarity=0.189 Sum_probs=205.0
Q ss_pred ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchh-----HHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc
Q 009331 18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDME-----LREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI 92 (537)
Q Consensus 18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-----~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~ 92 (537)
.-...|.|+||+|+..|+.+.+..++..++... +...+...+..|.||||+|+..|+.++|++|++.+ .+.+.
T Consensus 10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~ 87 (285)
T 3d9h_A 10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAVNI 87 (285)
T ss_dssp --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCSCE
T ss_pred ccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCCCC
Confidence 344678999999999999888888766543200 01224667899999999999999999999999987 44667
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Q 009331 93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172 (537)
Q Consensus 93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 172 (537)
.+.+|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.|+++. .+.+|.||||+|
T Consensus 88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A 164 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEA 164 (285)
T ss_dssp ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHH
T ss_pred cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHH
Confidence 8899999999999999999999999998876644 8899999999999999999999999999874 345699999999
Q ss_pred HHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331 173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252 (537)
Q Consensus 173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L 252 (537)
+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++. +.+++ .|..|+||||+|+..++.+++++|
T Consensus 165 ~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~-~~~~g~t~L~~A~~~~~~~~v~~L 241 (285)
T 3d9h_A 165 ARRGHVECVNSLIAYGGNIDH-KISHLGTPLYLACENQQRACVKKLLES-GADVN-QGKGQDSPLHAVVRTASEELACLL 241 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTC-CBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTT-CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999988654 478999999999999999999999995 56667 489999999999999999999999
Q ss_pred hhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhc-CCCC
Q 009331 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH-GVPC 293 (537)
Q Consensus 253 l~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~-ga~~ 293 (537)
++ .|++++.+|..|.|||++|+ ++.+++++|+++ |++.
T Consensus 242 l~-~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 242 MD-FGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp HH-TTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred HH-CCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence 99 79999999999999999999 557899999998 6554
No 6
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.9e-40 Score=335.66 Aligned_cols=263 Identities=19% Similarity=0.238 Sum_probs=228.2
Q ss_pred hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHccc-CCCCcHHHHHHHcCCHHHHHHHH--------HhCC
Q 009331 16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMN-QSGETALYVAAEYGYVDMVREMI--------RYHD 86 (537)
Q Consensus 16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~-~~g~t~L~~Aa~~g~~~iv~~Ll--------~~~~ 86 (537)
....+..|.||||.|+..|+ ++++.|+... ++..+ ..|.||||+|+..|+.+++++|+ +.+
T Consensus 87 ~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~--------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g- 156 (373)
T 2fo1_E 87 PTEPEPESPIKLHTEAAGSY-AITEPITRES--------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG- 156 (373)
T ss_dssp -------CCCHHHHHHHSSS-CCCSCCSTTT--------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC-
T ss_pred ccCCCCCCccHHHHHhcCCc-hHHHHhcccc--------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-
Confidence 34567889999999999665 7777775532 34456 78999999999999998888877 554
Q ss_pred cccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcC---CCccccccc
Q 009331 87 TSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG---STLATIARS 163 (537)
Q Consensus 87 ~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~---~~~~~~~~~ 163 (537)
.+.+..|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++++ .++ ...|.
T Consensus 157 -a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~ 233 (373)
T 2fo1_E 157 -ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDR 233 (373)
T ss_dssp -CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCT
T ss_pred -CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc-CCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCC
Confidence 456678899999999999999999999999999887644 889999999999999999999999987 454 56788
Q ss_pred CCCcHHHHHHHCC---cHHHHHHHHhcCCCCcc-------cCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCC
Q 009331 164 NGKTALHSAARNG---HLEIVKALLSKEPGIVL-------RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG 233 (537)
Q Consensus 164 ~g~tpL~~A~~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G 233 (537)
+|.||||+|+..| +.+++++|++.+.++.. ..|..|.||||+|+..|+.+++++|++.++.+++.+|.+|
T Consensus 234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g 313 (373)
T 2fo1_E 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 313 (373)
T ss_dssp TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence 9999999999998 89999999999988754 2467899999999999999999999998878999999999
Q ss_pred CcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331 234 NSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 292 (537)
Q Consensus 234 ~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~ 292 (537)
+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus 314 ~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 314 KTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp CCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred CCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 999999999999999999999 7999999999999999999999999999999999875
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.9e-38 Score=315.95 Aligned_cols=273 Identities=24% Similarity=0.297 Sum_probs=237.8
Q ss_pred hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCC
Q 009331 16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR 95 (537)
Q Consensus 16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 95 (537)
...++..+.++||.|++.|+.+.++.++...+. .++..|..|.||||+|+..|+.++|++|++.+ .+.+..+.
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~ 89 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNV-----NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDK 89 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTT-----TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCT
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCC-----CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCC
Confidence 456677888999999999999999999987432 14567889999999999999999999999987 44666889
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHH----
Q 009331 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS---- 171 (537)
Q Consensus 96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~---- 171 (537)
.|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|+++|+++ ...+..|.+|++.
T Consensus 90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~ 167 (351)
T 3utm_A 90 GGLVPLHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTP 167 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSH
T ss_pred CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhh
Confidence 9999999999999999999999999887654 889999999999999999999999999987 5678888888765
Q ss_pred -----------------HHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhc---CCHHHHHHHHhcCCcccccccC
Q 009331 172 -----------------AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG---QSIELVDELVKVEPVIINMVDA 231 (537)
Q Consensus 172 -----------------A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~n~~d~ 231 (537)
++..++.+.+..++...... ...+..|.||||.|+.. +..+++++|++ .+.+++.+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~ 245 (351)
T 3utm_A 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNK 245 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCT
T ss_pred hhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCC
Confidence 45677777787777765543 33468899999999998 56899999999 5677899999
Q ss_pred CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCCCCc
Q 009331 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ 300 (537)
Q Consensus 232 ~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~ 300 (537)
+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++.......
T Consensus 246 ~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g 313 (351)
T 3utm_A 246 DFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCC
Confidence 99999999999999999999998 799999999999999999999999999999999999876554433
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=309.52 Aligned_cols=250 Identities=18% Similarity=0.159 Sum_probs=220.8
Q ss_pred CCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHH
Q 009331 22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF 101 (537)
Q Consensus 22 ~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L 101 (537)
+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+ .+.+..+..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L 73 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTADWHTPL 73 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHH
Confidence 689999999999999999999999876 3567889999999999999999999999987 45667889999999
Q ss_pred HHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHH
Q 009331 102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV 181 (537)
Q Consensus 102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv 181 (537)
|+|+..|+.+++++|++.+++... +..|.||||+|+..|+.+++++|++.|+++ ...|..|.||||+|+..|+.+++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v 150 (261)
T 2xai_A 74 FNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACV 150 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSC--SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHH
Confidence 999999999999999999988653 556999999999999999999999999987 66788999999999999999999
Q ss_pred HHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcC----
Q 009331 182 KALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNING---- 257 (537)
Q Consensus 182 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g---- 257 (537)
++|++.++++.. +..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+.++ +++++|++..+
T Consensus 151 ~~Ll~~g~~~~~--~~~g~t~Lh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l 225 (261)
T 2xai_A 151 KKLLESGADVNQ--GKGQDSPLHAVARTASEELACLLMD-FGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSL 225 (261)
T ss_dssp HHHHHHTCCTTC--CBTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCH
T ss_pred HHHHHcCCCCCC--CCCCCChHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccH
Confidence 999999998763 7899999999999999999999999 57789999999999999999665 47888888433
Q ss_pred ---CCcccccCCCCCHHHHHHHcCChhHHHHHH
Q 009331 258 ---VDKAVINKSRETALDTAEKTGHSEIGVILK 287 (537)
Q Consensus 258 ---~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~ 287 (537)
++++.+|..|.||+|.|.+...++.++-++
T Consensus 226 ~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 226 MQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp HHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred HHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 245678999999999999887776655444
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.6e-39 Score=329.17 Aligned_cols=268 Identities=19% Similarity=0.203 Sum_probs=224.4
Q ss_pred HHHHhhhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccc
Q 009331 11 WKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLA 90 (537)
Q Consensus 11 ~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~ 90 (537)
..++.....|.+|.||||+|+..|+.++|++|++.+.+. +..|..|.||||+|+..|+.++|++|++.+.
T Consensus 8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---- 77 (364)
T 3ljn_A 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP------TIQNRFGCTALHLACKFGCVDTAKYLASVGE---- 77 (364)
T ss_dssp --------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----
T ss_pred ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----
Confidence 344556778889999999999999999999999998763 5678899999999999999999999999875
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHHh----CChhhh----------------cCCCCCChHHHHHHhCC--CHHHHH
Q 009331 91 GIKARNGYDAFHIAAKQGCLEVLKILMEA----LPELLM----------------TFDSSNTTALHTASSQG--HVEVVK 148 (537)
Q Consensus 91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~----~~~~~~----------------~~d~~g~tpLh~A~~~g--~~~iv~ 148 (537)
...+.+|.||||+|+..|+.+++++|++. +..... ..|..|.||||+|+..| +.++++
T Consensus 78 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~ 157 (364)
T 3ljn_A 78 VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK 157 (364)
T ss_dssp CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHH
T ss_pred CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHH
Confidence 23345899999999999999999999998 544433 14678999999999999 999999
Q ss_pred HHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCC----cccCCCCCChHHHHHHhcCCHHHHHHHHhcCCc
Q 009331 149 FLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI----VLRNDKKGQTALHMAVKGQSIELVDELVKVEPV 224 (537)
Q Consensus 149 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~ 224 (537)
+|++.|+++ ...|..|.||||+|+..|+.+++++|++.+++. .+..|..|.||||+|+..|+.+++++|++ .+.
T Consensus 158 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga 235 (364)
T 3ljn_A 158 ILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGI 235 (364)
T ss_dssp HHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTC
T ss_pred HHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCC
Confidence 999999987 667889999999999999999999999998872 34558899999999999999999999999 577
Q ss_pred ccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCccc------------ccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331 225 IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAV------------INKSRETALDTAEKTGHSEIGVILKEHGV 291 (537)
Q Consensus 225 ~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~------------~~~~g~t~L~~A~~~~~~~i~~~L~~~ga 291 (537)
+++.+|.+|+||||+|+..|+.+++++|++. |.+++. .+..+.||++.|+..++.+.+..|++.++
T Consensus 236 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~ 313 (364)
T 3ljn_A 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence 7899999999999999999999999999984 555432 56678889998988887776666665543
No 10
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.4e-38 Score=301.18 Aligned_cols=214 Identities=22% Similarity=0.276 Sum_probs=163.5
Q ss_pred cCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHH
Q 009331 72 YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151 (537)
Q Consensus 72 ~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll 151 (537)
.++.+++++|++.+... ....+..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|+
T Consensus 33 ~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll 110 (253)
T 1yyh_A 33 EDAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILI 110 (253)
T ss_dssp --------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCChHHHHHHHHccCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 34788888888876432 2335778888888888888888888888888776544 778888888888888888888888
Q ss_pred HcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccC
Q 009331 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231 (537)
Q Consensus 152 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~ 231 (537)
+.+.......+.+|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|.
T Consensus 111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~ 188 (253)
T 1yyh_A 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNN 188 (253)
T ss_dssp HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT
T ss_pred HcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC
Confidence 888744466778888888888888888888888888877554 47888899999999999999999998 4667888899
Q ss_pred CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331 232 KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290 (537)
Q Consensus 232 ~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g 290 (537)
.|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..|+.+++++|....
T Consensus 189 ~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 189 REETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred CCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999999999999999998 68899999999999999999999999999888754
No 11
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1e-37 Score=297.87 Aligned_cols=233 Identities=24% Similarity=0.295 Sum_probs=193.4
Q ss_pred HHcccCCCCcHHHHHHHcCCHHHHHHHHHh--CCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCC
Q 009331 55 LSKMNQSGETALYVAAEYGYVDMVREMIRY--HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT 132 (537)
Q Consensus 55 l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~--~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~ 132 (537)
++.+|.+|.||||+|+..|+.+++++|++. ....+.+..+..|.||||+|+..|+.+++++|++.+.++... |..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCC
Confidence 356788899999999999999999988872 112455667888999999999999999999999988776544 78899
Q ss_pred hHHHHHHhCCCHHHHHHHHHcCC----CcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHh
Q 009331 133 TALHTASSQGHVEVVKFLLEKGS----TLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208 (537)
Q Consensus 133 tpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 208 (537)
||||+|+..|+.+++++|++.++ ++ ...+..|.||||.|+..|+.+++++|++.+++.....+..|.||||+|+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 99999999999999999999887 43 55678899999999999999999999999988766544789999999999
Q ss_pred cCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331 209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288 (537)
Q Consensus 209 ~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~ 288 (537)
.|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..++.++++.|.+
T Consensus 160 ~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 160 NNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp TTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred cCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 999999999998 467789999999999999999999999999998 799999999999999999999999999998887
Q ss_pred cCC
Q 009331 289 HGV 291 (537)
Q Consensus 289 ~ga 291 (537)
.++
T Consensus 238 ~~a 240 (241)
T 1k1a_A 238 RPA 240 (241)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 12
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2e-37 Score=298.87 Aligned_cols=231 Identities=22% Similarity=0.240 Sum_probs=179.2
Q ss_pred hhccCCCCCChHHHHHHcC-------------CHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009331 16 KQLTAKRDDTPLQSLVRTG-------------SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82 (537)
Q Consensus 16 ~~~~~~~~~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll 82 (537)
.+.+|.+|.||||+|+..| +.++++.|++.+.+. ....|..|.||||+|+..|+.++|++|+
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 77 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-----HNQTDRTGETALHLAARYSRSDAAKRLL 77 (253)
T ss_dssp ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc-----ccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 4567899999999999987 899999999998643 3456889999999999999999999999
Q ss_pred HhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccc
Q 009331 83 RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR 162 (537)
Q Consensus 83 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 162 (537)
+.+ .+.+..+..|.||||+|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.|+++ ...|
T Consensus 78 ~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d 154 (253)
T 1yyh_A 78 EAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVD 154 (253)
T ss_dssp HTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBC
T ss_pred HcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcC
Confidence 987 4456678999999999999999999999999998666667899999999999999999999999999987 6678
Q ss_pred cCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHH
Q 009331 163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR 242 (537)
Q Consensus 163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~ 242 (537)
.+|.||||+|+..|+.+++++|++++.++.. .|..|.||||+|+.+|+.+++++|++ .+.+++.+|..|+||||+|+.
T Consensus 155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~ 232 (253)
T 1yyh_A 155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQE 232 (253)
T ss_dssp TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHH
Confidence 8999999999999999999999999998654 48899999999999999999999999 567789999999999999999
Q ss_pred hCcHHHHHHHhhhc
Q 009331 243 KGRVQIVQKLLNIN 256 (537)
Q Consensus 243 ~~~~~iv~~Ll~~~ 256 (537)
+|+.+++++|....
T Consensus 233 ~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 233 RMHHDIVRLLDLEH 246 (253)
T ss_dssp TTCHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998743
No 13
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-36 Score=293.82 Aligned_cols=235 Identities=26% Similarity=0.328 Sum_probs=214.3
Q ss_pred CCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCCh
Q 009331 20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD 99 (537)
Q Consensus 20 ~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 99 (537)
+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+ .+.+..+..|.|
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t 107 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADP------VLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECDFYGFT 107 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBCTTCCB
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCcccCC
Confidence 677899999999999999999999998764 456889999999999999999999999987 445667889999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCChhhhcC---------CCCCChHHHHHHhCCCHHHHHHHHHc-CCCcccccccCCCcHH
Q 009331 100 AFHIAAKQGCLEVLKILMEALPELLMTF---------DSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTAL 169 (537)
Q Consensus 100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL 169 (537)
|||.|+..|+.+++++|++.+.+..... +..|.||||+|+..|+.+++++|++. +.++ ...+..|.|||
T Consensus 108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l 186 (285)
T 1wdy_A 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNAL 186 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHH
Confidence 9999999999999999999988765432 67899999999999999999999998 7776 66788999999
Q ss_pred HHHHHCCc----HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCc
Q 009331 170 HSAARNGH----LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245 (537)
Q Consensus 170 ~~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~ 245 (537)
|.|+..++ .+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|+..|+
T Consensus 187 ~~a~~~~~~~~~~~i~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~ 265 (285)
T 1wdy_A 187 IHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265 (285)
T ss_dssp HHHHHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHccccchHHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc
Confidence 99999999 999999999998865 4488999999999999999999999997888899999999999999999999
Q ss_pred HHHHHHHhhhcCCCcccccC
Q 009331 246 VQIVQKLLNINGVDKAVINK 265 (537)
Q Consensus 246 ~~iv~~Ll~~~g~~~~~~~~ 265 (537)
.+++++|++ .|++++.+|.
T Consensus 266 ~~i~~~Ll~-~Ga~~~~~d~ 284 (285)
T 1wdy_A 266 KKIAELLCK-RGASTDCGDL 284 (285)
T ss_dssp HHHHHHHHH-HSSCSCCSSC
T ss_pred HHHHHHHHH-cCCCCCcccc
Confidence 999999999 7999998873
No 14
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.2e-37 Score=301.55 Aligned_cols=254 Identities=18% Similarity=0.159 Sum_probs=190.0
Q ss_pred hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331 17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN 96 (537)
Q Consensus 17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 96 (537)
...|.+|.||||+|++.|+.+++++|++.+.+. ..++.++..|.||||+|+..|+.++|++|++.+. +.+..+..
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~ 77 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA--GVLVAERG 77 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CSSCCCTT
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCC
Confidence 457899999999999999999999999988653 2256788999999999999999999999999874 45667889
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCChhhh------------cCCCCCChHHHHHHhCCCHHHHH-HHHHcCCCccccccc
Q 009331 97 GYDAFHIAAKQGCLEVLKILMEALPELLM------------TFDSSNTTALHTASSQGHVEVVK-FLLEKGSTLATIARS 163 (537)
Q Consensus 97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~------------~~d~~g~tpLh~A~~~g~~~iv~-~Ll~~~~~~~~~~~~ 163 (537)
|.||||+|+..|+.+++++|++.++.... .....+.++++.++..+...... .+...+.++ ...+.
T Consensus 78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (282)
T 1oy3_D 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENY 156 (282)
T ss_dssp SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT-TCCCT
T ss_pred CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcC-CCcCC
Confidence 99999999999999999999998765321 11234567777777665544333 333334444 56788
Q ss_pred CCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHh
Q 009331 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243 (537)
Q Consensus 164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~ 243 (537)
.|.||||+|+..|+.+++++|+++++++....+..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..
T Consensus 157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~ 235 (282)
T 1oy3_D 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLR 235 (282)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTS
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHc
Confidence 999999999999999999999999999876644569999999999999999999999 4778999999999999999999
Q ss_pred CcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcC
Q 009331 244 GRVQIVQKLLNINGVDKAVINKSRETALDTAEKTG 278 (537)
Q Consensus 244 ~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~ 278 (537)
|+.+++++|++ .|++++.+|..|.||+++|....
T Consensus 236 ~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 236 PNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp SCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred CCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence 99999999998 79999999999999999998654
No 15
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.2e-36 Score=288.89 Aligned_cols=227 Identities=27% Similarity=0.297 Sum_probs=159.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHH
Q 009331 60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139 (537)
Q Consensus 60 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~ 139 (537)
..+++|||.|+..|+.+.++.|++.+. ...+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~ 81 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAA 81 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCG-GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhch-hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC-cCCCCCCHHHHHH
Confidence 345566666666666666666666542 22344556666666666666666666666666655443 3666677777777
Q ss_pred hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHH
Q 009331 140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219 (537)
Q Consensus 140 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll 219 (537)
..|+.+++++|+++|.++ ...+..|.||||.|+..|+.+++++|++.+.++.. .|..|.||||.|+..|+.+++++|+
T Consensus 82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 777777777777776665 44566677777777777777777777777666433 3667777777777777777777777
Q ss_pred hcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331 220 KVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 292 (537)
Q Consensus 220 ~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~ 292 (537)
+ .+.+++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.||+++|...++.+++++|.++|++
T Consensus 160 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 160 F-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp H-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred h-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 7 455677778888888888888888888888887 5788888888888888888877778888888777654
No 16
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=299.77 Aligned_cols=259 Identities=22% Similarity=0.269 Sum_probs=226.0
Q ss_pred hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331 17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN 96 (537)
Q Consensus 17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 96 (537)
+..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++.+ .+.+..+..
T Consensus 52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~~~~~ 123 (351)
T 3utm_A 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV------HAKDKGGLVPLHNACSYGHYEVTELLLKHG--ACVNAMDLW 123 (351)
T ss_dssp CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTT
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCC
Confidence 356788999999999999999999999998763 567899999999999999999999999987 445667889
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH---------------------HhCCCHHHHHHHHHcCC
Q 009331 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA---------------------SSQGHVEVVKFLLEKGS 155 (537)
Q Consensus 97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A---------------------~~~g~~~iv~~Ll~~~~ 155 (537)
|.||||+|+..|+.+++++|++.+.+.... +..|.||+++| +..++.+.++.++..+.
T Consensus 124 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (351)
T 3utm_A 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI 202 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc
Confidence 999999999999999999999999886654 88899987765 55667777777777654
Q ss_pred CcccccccCCCcHHHHHHHC---CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCC
Q 009331 156 TLATIARSNGKTALHSAARN---GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK 232 (537)
Q Consensus 156 ~~~~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~ 232 (537)
.. ...+..|.||||.|+.. +..+++++|++.+.++.. .|..|.||||+|+.+|+.+++++|++ .+.++|.+|..
T Consensus 203 ~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~ 279 (351)
T 3utm_A 203 IN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSL 279 (351)
T ss_dssp TT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred cc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC
Confidence 43 44677899999999999 668999999999988654 48899999999999999999999999 57789999999
Q ss_pred CCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 292 (537)
Q Consensus 233 G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~ 292 (537)
|+||||+|+..|+.+++++|++ .|++++..|..|.||+++| ..++.++|.+.+..
T Consensus 280 g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 280 GQTALHRAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM 334 (351)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred CCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence 9999999999999999999999 7999999999999999998 67888888887654
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.6e-36 Score=287.62 Aligned_cols=224 Identities=28% Similarity=0.345 Sum_probs=187.8
Q ss_pred HcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHH
Q 009331 56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL 135 (537)
Q Consensus 56 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL 135 (537)
+..+..|.||||+|+..|+.+++++|++.+. +.+..+..|.||||.|+..|+.+++++|++.+.++.. .+..|.|||
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L 81 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGA--NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-KDAEGSTCL 81 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC-CCTTSCCHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCC--CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCcHH
Confidence 4567788899999999999999999988763 4555677888999999999999999999988876554 377888999
Q ss_pred HHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHH
Q 009331 136 HTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV 215 (537)
Q Consensus 136 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v 215 (537)
|+|+..|+.+++++|++.+.......+..|.||||.|+..|+.+++++|++.++++.. .|..|.||||.|+..|+.+++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHCCCHHHH
Confidence 9999999999999999988444466788889999999999999999999998887643 478899999999999999999
Q ss_pred HHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHH
Q 009331 216 DELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285 (537)
Q Consensus 216 ~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~ 285 (537)
++|++ .+.+++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.|||++|+..++.+.+..
T Consensus 161 ~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~ 228 (237)
T 3b7b_A 161 EILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQ 228 (237)
T ss_dssp HHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred HHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99998 466788889999999999999999999999998 688999999999999999998887754433
No 18
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.2e-36 Score=286.21 Aligned_cols=228 Identities=23% Similarity=0.340 Sum_probs=207.1
Q ss_pred hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCC
Q 009331 16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR 95 (537)
Q Consensus 16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 95 (537)
.+.++.+|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.+. +.+..+.
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~ 75 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI------DTCSEDQRTPLMEAAENNHLEAVKYLIKAGA--LVDPKDA 75 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC--CCCCCCT
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc------CccCCCCCCHHHHHHHhCCHHHHHHHHhCCC--CCCCCCC
Confidence 4578899999999999999999999999998763 5668899999999999999999999999874 4556788
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC
Q 009331 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN 175 (537)
Q Consensus 96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 175 (537)
.|.||||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..
T Consensus 76 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 154 (237)
T 3b7b_A 76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFS 154 (237)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHC
Confidence 99999999999999999999999996666667899999999999999999999999999987 66788999999999999
Q ss_pred CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331 176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254 (537)
Q Consensus 176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 254 (537)
|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+.+++...+..+++
T Consensus 155 ~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 155 GCVDIAEILLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp CCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988654 48899999999999999999999999 577789999999999999999999876666654
No 19
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=6.6e-36 Score=282.96 Aligned_cols=221 Identities=23% Similarity=0.259 Sum_probs=167.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhC--ChhhhcCCCCCChHHHHHH
Q 009331 62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL--PELLMTFDSSNTTALHTAS 139 (537)
Q Consensus 62 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~ 139 (537)
|+||||.|+..|+.++|+.|++.+.. .....+..|.||||+|+..|+.+++++|++.+ ++.....|..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCcc-ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 56777777777777777777776532 22335667777777777777777777777777 4444435677788888888
Q ss_pred hCCCHHHHHHHHHcC--CCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHH
Q 009331 140 SQGHVEVVKFLLEKG--STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE 217 (537)
Q Consensus 140 ~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~ 217 (537)
..|+.+++++|+++| .++ ...+..|.||||.|+..|+.+++++|++++.++. ..|..|.||||+|+..|+.+++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHH
Confidence 888888888888877 554 4556778888888888888888888888877754 346788888888888888888888
Q ss_pred HHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331 218 LVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288 (537)
Q Consensus 218 Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~ 288 (537)
|++.++.+++.+|..|+||||+|+..|+.+++++|++..|++++.+|..|.||+++|... ++.++|++
T Consensus 159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 888665778888889999999999999999999998447889999999999999988643 56666654
No 20
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.9e-36 Score=307.94 Aligned_cols=231 Identities=23% Similarity=0.286 Sum_probs=207.9
Q ss_pred HcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHH
Q 009331 56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL 135 (537)
Q Consensus 56 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL 135 (537)
+..|..|.||||+||..|+.++|++|++.+ .+.+..+..|.||||+|+..|+.+++++|++.++... +..|.|||
T Consensus 14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L 88 (364)
T 3ljn_A 14 IKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPI 88 (364)
T ss_dssp --CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHH
Confidence 445778999999999999999999999987 4567789999999999999999999999999998432 45899999
Q ss_pred HHHHhCCCHHHHHHHHHc----CCCccc----------------ccccCCCcHHHHHHHCC--cHHHHHHHHhcCCCCcc
Q 009331 136 HTASSQGHVEVVKFLLEK----GSTLAT----------------IARSNGKTALHSAARNG--HLEIVKALLSKEPGIVL 193 (537)
Q Consensus 136 h~A~~~g~~~iv~~Ll~~----~~~~~~----------------~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~ 193 (537)
|+|+..|+.+++++|++. +.++.. ..+..|.||||+|+..| +.+++++|++.+.++.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~- 167 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT- 167 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-
Confidence 999999999999999998 766532 16788999999999999 9999999999998865
Q ss_pred cCCCCCChHHHHHHhcCCHHHHHHHHhcCCc----ccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCC
Q 009331 194 RNDKKGQTALHMAVKGQSIELVDELVKVEPV----IINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRET 269 (537)
Q Consensus 194 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~----~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t 269 (537)
..|..|.||||+|+..|+.+++++|++.+.. .+|..|..|+||||+|+..|+.+++++|++ .|++++..|..|.|
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~t 246 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTV 246 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTSCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence 4488999999999999999999999995432 289999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCChhHHHHHHhcCCCC
Q 009331 270 ALDTAEKTGHSEIGVILKEHGVPC 293 (537)
Q Consensus 270 ~L~~A~~~~~~~i~~~L~~~ga~~ 293 (537)
||++|+..|+.+++++|+++|++.
T Consensus 247 pL~~A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 247 PLYLSVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp HHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHhChHHHHHHHHHcCCch
Confidence 999999999999999999998753
No 21
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=291.08 Aligned_cols=222 Identities=23% Similarity=0.268 Sum_probs=199.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHh
Q 009331 61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140 (537)
Q Consensus 61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 140 (537)
+|.||||+|+..|+.++|++|++.+ .+.+..+..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHH
Confidence 5899999999999999999999986 446678899999999999999999999999999876644 8999999999999
Q ss_pred CCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHh
Q 009331 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220 (537)
Q Consensus 141 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 220 (537)
.|+.+++++|+++|+++. .+.+|.||||.|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDH-KISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999874 356699999999999999999999999988654 47899999999999999999999999
Q ss_pred cCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331 221 VEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 293 (537)
Q Consensus 221 ~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~ 293 (537)
. +.++|. |..|+||||+|+..++.+++++|++ .|++++.+|..|.||+++|+.. .+++++|++.+.+.
T Consensus 156 ~-g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~ 223 (261)
T 2xai_A 156 S-GADVNQ-GKGQDSPLHAVARTASEELACLLMD-FGADTQAKNAEGKRPVELVPPE--SPLAQLFLEREGPP 223 (261)
T ss_dssp H-TCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTT--CTHHHHHHHC-CCC
T ss_pred c-CCCCCC-CCCCCChHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCChhhhcccc--ccHHHHHHhccCCc
Confidence 5 555664 8899999999999999999999999 6999999999999999999954 46899999987653
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4e-36 Score=285.19 Aligned_cols=228 Identities=23% Similarity=0.304 Sum_probs=206.7
Q ss_pred cCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCC
Q 009331 19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY 98 (537)
Q Consensus 19 ~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~ 98 (537)
.+..+.+|||.|++.|+.+.++++++.++. .++..+..|.||||+|+..|+.+++++|++.+ .+.+..+..|.
T Consensus 2 e~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~ 74 (231)
T 3aji_A 2 EGCVSNIMICNLAYSGKLDELKERILADKS-----LATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGW 74 (231)
T ss_dssp -CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSC
T ss_pred CCccccchHHHHHHhCCHHHHHHHHHhchh-----hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCC
Confidence 356789999999999999999999998753 25677899999999999999999999999986 44566788999
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331 99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178 (537)
Q Consensus 99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 178 (537)
||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|+++|.++ ...+..|.||||.|+..|+.
T Consensus 75 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~ 152 (231)
T 3aji_A 75 SPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNL 152 (231)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred CHHHHHHHcCHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCH
Confidence 9999999999999999999999887644 889999999999999999999999999987 56788999999999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258 (537)
Q Consensus 179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~ 258 (537)
+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|.+ .|+
T Consensus 153 ~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~-~~a 229 (231)
T 3aji_A 153 KMVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRLAEG-EEA 229 (231)
T ss_dssp HHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHhcCCCccc-cCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc-ccc
Confidence 999999999988654 48899999999999999999999999 577789999999999999999999999999987 443
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.6e-36 Score=288.19 Aligned_cols=229 Identities=23% Similarity=0.301 Sum_probs=199.6
Q ss_pred hccCCCCCChHHHHHHcCCHHHHHHHHh----hCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc
Q 009331 17 QLTAKRDDTPLQSLVRTGSVELVLDMIS----SYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI 92 (537)
Q Consensus 17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~ 92 (537)
..+|.+|.||||+||+.|+.+++++|++ .+.+ ++..|..|.||||+|+..|+.+++++|++.+. +.+.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~ 74 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA--SPMA 74 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCcccccCCCHHHHHHHcCCHHHHHHHHHcCC--Cccc
Confidence 4678999999999999999999999998 3333 45678899999999999999999999999874 4556
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHhCCh---hhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHH
Q 009331 93 KARNGYDAFHIAAKQGCLEVLKILMEALPE---LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL 169 (537)
Q Consensus 93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 169 (537)
.+..|.||||+|+..|+.+++++|++.++. .....|..|.||||+|+..|+.+++++|++.|+++....+..|.|||
T Consensus 75 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L 154 (241)
T 1k1a_A 75 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154 (241)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH
Confidence 788999999999999999999999999873 23445889999999999999999999999999998544337899999
Q ss_pred HHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHH
Q 009331 170 HSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIV 249 (537)
Q Consensus 170 ~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv 249 (537)
|+|+..|+.+++++|++++.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++
T Consensus 155 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~ 232 (241)
T 1k1a_A 155 IHAVENNSLSMVQLLLQHGANVNA-QMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDIL 232 (241)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence 999999999999999999988654 48899999999999999999999999 5777899999999999999999999999
Q ss_pred HHHhhh
Q 009331 250 QKLLNI 255 (537)
Q Consensus 250 ~~Ll~~ 255 (537)
+.|.+.
T Consensus 233 ~~l~~~ 238 (241)
T 1k1a_A 233 RGKATR 238 (241)
T ss_dssp TC----
T ss_pred hhhccC
Confidence 999873
No 24
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-36 Score=294.18 Aligned_cols=230 Identities=20% Similarity=0.201 Sum_probs=204.7
Q ss_pred hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCC
Q 009331 17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN 96 (537)
Q Consensus 17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 96 (537)
...+.+|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.++|++|++.+ .+.+..+..
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~ 124 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTAD 124 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSSCCCTT
T ss_pred cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCCC
Confidence 34678899999999999999999999999876 4567899999999999999999999999986 456678899
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG 176 (537)
Q Consensus 97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 176 (537)
|.||||+|+..|+.+++++|++.+++... +..|.||||+|+..|+.+++++|++.|+++ ...|..|.||||+|+..|
T Consensus 125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~ 201 (285)
T 3d9h_A 125 WHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQ 201 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTT
T ss_pred CCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 99999999999999999999999987653 456999999999999999999999999987 667899999999999999
Q ss_pred cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc
Q 009331 177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256 (537)
Q Consensus 177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 256 (537)
+.+++++|++.++++. .|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+ ++.+++++|++..
T Consensus 202 ~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 202 QRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVP--PESPLAQLFLERE 276 (285)
T ss_dssp CHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred cHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence 9999999999998876 37899999999999999999999999 57789999999999999999 4578999999976
Q ss_pred CCCccc
Q 009331 257 GVDKAV 262 (537)
Q Consensus 257 g~~~~~ 262 (537)
|+++..
T Consensus 277 ~a~l~~ 282 (285)
T 3d9h_A 277 GASLPK 282 (285)
T ss_dssp ------
T ss_pred ccCCCC
Confidence 776543
No 25
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=9.3e-36 Score=281.92 Aligned_cols=222 Identities=26% Similarity=0.341 Sum_probs=197.4
Q ss_pred CCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc-cCCCCChHH
Q 009331 23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI-KARNGYDAF 101 (537)
Q Consensus 23 ~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~-~~~~g~t~L 101 (537)
|.||||.|++.|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++|++.+...+... .+..|.|||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L 76 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGG-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccc-----cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHH
Confidence 789999999999999999999998643 34578999999999999999999999999986555555 788999999
Q ss_pred HHHHHcCCHHHHHHHHHhC--ChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHH
Q 009331 102 HIAAKQGCLEVLKILMEAL--PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE 179 (537)
Q Consensus 102 h~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 179 (537)
|+|+..|+.+++++|++.+ +++. ..|..|.||||+|+..|+.+++++|+++|.++ ...|..|.||||+|+..|+.+
T Consensus 77 ~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 154 (228)
T 2dzn_A 77 HIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK 154 (228)
T ss_dssp HHHHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999998 5544 44889999999999999999999999999987 677889999999999999999
Q ss_pred HHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331 180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254 (537)
Q Consensus 180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 254 (537)
++++|++.++......|..|.||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|+.. ++.++|++
T Consensus 155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 9999999995545666899999999999999999999999557888999999999999999765 45556655
No 26
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=280.47 Aligned_cols=231 Identities=24% Similarity=0.289 Sum_probs=203.4
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHH
Q 009331 57 KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALH 136 (537)
Q Consensus 57 ~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh 136 (537)
..|..|.|||+.|+..|+.+++++|++.+ .+.+..+..|.||||.|+..|+.+++++|++.++......+..|.||||
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 45778899999999999999999999977 4456678889999999999999999999999999887776777999999
Q ss_pred HHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCC-HHHH
Q 009331 137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS-IELV 215 (537)
Q Consensus 137 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v 215 (537)
+|+..|+.+++++|++.|+++ ...+..|.||||.|+..|+.+++++|++++.+.. ..+..|.||||.|+..++ .+++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~ 159 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPT 159 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCSSTTH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCChHHHH
Confidence 999999999999999999887 5678889999999999999999999999988765 447889999999996665 7888
Q ss_pred HHHHhcCCcccccccC-CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331 216 DELVKVEPVIINMVDA-KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 293 (537)
Q Consensus 216 ~~Ll~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~ 293 (537)
++|++ .+.+++..+. .|+||||+|+..|+.+++++|++ .|++++..|..|.||+++|+..++.+++++|+++|+..
T Consensus 160 ~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 160 RLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 88888 5666788886 89999999999999999999998 68999999999999999999999999999999988764
No 27
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.3e-35 Score=294.77 Aligned_cols=232 Identities=23% Similarity=0.336 Sum_probs=200.2
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccC-CCCChHHHHHHHcCCHHHHHHHHHhCChhh-------------
Q 009331 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA-RNGYDAFHIAAKQGCLEVLKILMEALPELL------------- 124 (537)
Q Consensus 59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~------------- 124 (537)
+.+|+||||.|++.|+.++|++||+.|.+ ++.++ ..|.||||+|+..|+.+++++|++++++..
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad--vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 34578999999999999999999999844 44454 459999999999999999999999876532
Q ss_pred -------------------hcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCccc---------ccccCCCcHHHHHHHCC
Q 009331 125 -------------------MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT---------IARSNGKTALHSAARNG 176 (537)
Q Consensus 125 -------------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~---------~~~~~g~tpL~~A~~~g 176 (537)
...|..|.||||+|+..|+.+++++|+++|+++.. ..+..|.||||+|+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 23478899999999999999999999999987632 23456899999999999
Q ss_pred cHHHHHHHHhc-CCCCcccCCCCCChHHHHHHhcCC----HHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHH
Q 009331 177 HLEIVKALLSK-EPGIVLRNDKKGQTALHMAVKGQS----IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQK 251 (537)
Q Consensus 177 ~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~ 251 (537)
+.+++++|+++ +.++ +..|..|.|++|.++..+. .+++++|++ .+.++|.+|.+|+||||+|+..|+.++++.
T Consensus 180 ~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~~v~~ 257 (337)
T 4g8k_A 180 HVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQR 257 (337)
T ss_dssp CHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence 99999999975 5554 4558899999998775433 357788888 677899999999999999999999999999
Q ss_pred HhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCC
Q 009331 252 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG 294 (537)
Q Consensus 252 Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~ 294 (537)
|++..|++++.+|.+|.||||+|+..|+.+++++|+++|+++.
T Consensus 258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 258 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300 (337)
T ss_dssp HHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred HHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 9997899999999999999999999999999999999999864
No 28
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.3e-35 Score=289.73 Aligned_cols=243 Identities=20% Similarity=0.204 Sum_probs=212.3
Q ss_pred HHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCC
Q 009331 30 LVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGC 109 (537)
Q Consensus 30 A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~ 109 (537)
+++..+.+.+..++..+. ++.+|..|.||||+|+..|+.++|++|++.+.+ .+.. +|.||||+|+..|+
T Consensus 6 ~i~~~~~~~v~~lL~~~~-------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~--~g~t~L~~A~~~g~ 74 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSKD-------TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL--KNLL--ENEFPLHQAATLED 74 (285)
T ss_dssp TGGGCCHHHHHHHHHSTT-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG--GSCC--TTCCHHHHHTTSSS
T ss_pred HHHhcCHHHHHHHHHhCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CCCC--CCCCHHHHHHHcCC
Confidence 345666677777776552 467899999999999999999999999998743 3333 59999999999999
Q ss_pred HHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCC-CcHHHHHHHCCcHHHHHHHHhcC
Q 009331 110 LEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG-KTALHSAARNGHLEIVKALLSKE 188 (537)
Q Consensus 110 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~ 188 (537)
.+++++|++.++++.. .|..|.||||+|+..|+.+++++|+++|+++ ...+..| .||||+|+..|+.+++++|++++
T Consensus 75 ~~~v~~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 75 TKIVKILLFSGLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp CHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 9999999999988765 4889999999999999999999999999997 5677788 89999999999999999999999
Q ss_pred CCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcH-HHHHHHhCcHHHHHHHhhhcCCCcccccCCC
Q 009331 189 PGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA-LHIATRKGRVQIVQKLLNINGVDKAVINKSR 267 (537)
Q Consensus 189 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g 267 (537)
++.... ..|.||||+|+..|+.+++++|++. +.+++.+|..|+|| ||+|+..++.+++++|++ .|++++..|.
T Consensus 153 ~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-- 226 (285)
T 3kea_A 153 PSTFDL--AILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL-- 226 (285)
T ss_dssp CTTCCC--STHHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG--
T ss_pred Cccccc--cCCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh--
Confidence 876322 3899999999999999999999994 77789999999998 999999999999999999 7999999884
Q ss_pred CCHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 009331 268 ETALDTAEKTGHSEIGVILKEHGVPCGKS 296 (537)
Q Consensus 268 ~t~L~~A~~~~~~~i~~~L~~~ga~~~~~ 296 (537)
.|+..|+.+++++|+++|++....
T Consensus 227 -----~a~~~~~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 227 -----ENVLLDDAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp -----GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred -----hhhhcCCHHHHHHHHHcCCCCCCc
Confidence 456789999999999999875433
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=291.62 Aligned_cols=217 Identities=26% Similarity=0.342 Sum_probs=145.4
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc------cccccCCCCChHHHHHHHcCCHH-HHHHHHHhCChhhhcCCCC
Q 009331 58 MNQSGETALYVAAEYGYVDMVREMIRYHDTS------LAGIKARNGYDAFHIAAKQGCLE-VLKILMEALPELLMTFDSS 130 (537)
Q Consensus 58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~------~~~~~~~~g~t~Lh~Aa~~g~~~-iv~~Ll~~~~~~~~~~d~~ 130 (537)
+|..+.+||+.||..|+.++|++|++.+... ..+..+..|.||||.|+..++.+ ++++|++.+.+++. .|.+
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~-~d~~ 85 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV-TSQD 85 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTC-CCTT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC-cCCC
Confidence 3445566777777777777777777655322 12334566778888887766653 67777777776554 3778
Q ss_pred CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210 (537)
Q Consensus 131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 210 (537)
|+||||+|+..|+.+++++|++.++++ ...+.+|.||+|.|+..++.+++++|++.++++.. .|..|.||||+|+.+|
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~-~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK-KDLSGNTPLIYACSGG 163 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCC
Confidence 888888888888888888888888776 55677788888888888888888888888877543 4778888888888888
Q ss_pred CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCC
Q 009331 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGH 279 (537)
Q Consensus 211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~ 279 (537)
+.+++++|++ .+.++|.+|..|+||||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+++++
T Consensus 164 ~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 164 HHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred CHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCc
Confidence 8888888888 566788888888899999998888888888888 688888888888999988876654
No 30
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.7e-35 Score=298.74 Aligned_cols=232 Identities=23% Similarity=0.291 Sum_probs=203.3
Q ss_pred hccC-CCCCChHHHHHHcCCHHHHHHHH--------hhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCc
Q 009331 17 QLTA-KRDDTPLQSLVRTGSVELVLDMI--------SSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDT 87 (537)
Q Consensus 17 ~~~~-~~~~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~ 87 (537)
+..| ..|.||||+|+..|+.+++++|+ +.+.+ ++..|..|.||||+|+..|+.++|++|++.+.
T Consensus 118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga- 190 (373)
T 2fo1_E 118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGA- 190 (373)
T ss_dssp TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC------CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCC-
Confidence 3445 78999999999999998888877 55554 45678999999999999999999999999874
Q ss_pred ccccccCCCCChHHHHHHHcCCHHHHHHHHHhCC--hhhhcCCCCCChHHHHHHhCC---CHHHHHHHHHcCCCccc---
Q 009331 88 SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP--ELLMTFDSSNTTALHTASSQG---HVEVVKFLLEKGSTLAT--- 159 (537)
Q Consensus 88 ~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~--~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~--- 159 (537)
+.+..+..|.||||+|+..|+.+++++|++.+. ......|..|.||||+|+..+ +.+++++|+++|+++..
T Consensus 191 -~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~ 269 (373)
T 2fo1_E 191 -DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269 (373)
T ss_dssp -CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred -CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence 456688899999999999999999999999873 233445899999999999998 89999999999998743
Q ss_pred ----ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCc
Q 009331 160 ----IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNS 235 (537)
Q Consensus 160 ----~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T 235 (537)
..|..|.||||+|+..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+|
T Consensus 270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t 348 (373)
T 2fo1_E 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHT 348 (373)
T ss_dssp GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCC
T ss_pred cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCC
Confidence 2466899999999999999999999998744456678999999999999999999999999 57789999999999
Q ss_pred HHHHHHHhCcHHHHHHHhhhcCC
Q 009331 236 ALHIATRKGRVQIVQKLLNINGV 258 (537)
Q Consensus 236 ~Lh~A~~~~~~~iv~~Ll~~~g~ 258 (537)
|||+|+.+|+.+++++|++ .++
T Consensus 349 ~l~~A~~~g~~~iv~~Ll~-~~a 370 (373)
T 2fo1_E 349 ARQLAQANNHHNIVDIFDR-CRP 370 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHT-TC-
T ss_pred HHHHHHHcCCHHHHHHHHh-cCc
Confidence 9999999999999999998 454
No 31
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=7.8e-35 Score=284.55 Aligned_cols=240 Identities=19% Similarity=0.205 Sum_probs=188.4
Q ss_pred HcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc-cccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChH
Q 009331 56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTS-LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTA 134 (537)
Q Consensus 56 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp 134 (537)
+.+|..|.||||+|+..|+.++|++|++.+... ..+..+..|.||||+|+..|+.+++++|+++++++... |..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tp 81 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHTA 81 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCCH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCH
Confidence 457899999999999999999999999987543 26678899999999999999999999999999887644 8899999
Q ss_pred HHHHHhCCCHHHHHHHHHcCCCccc------------ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChH
Q 009331 135 LHTASSQGHVEVVKFLLEKGSTLAT------------IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202 (537)
Q Consensus 135 Lh~A~~~g~~~iv~~Ll~~~~~~~~------------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 202 (537)
||+|+..|+.+++++|++++++... .....+.++++.++..+.......++..........+..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 9999999999999999998876421 1223456677777666554444333333222334568899999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcccccccC-CCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChh
Q 009331 203 LHMAVKGQSIELVDELVKVEPVIINMVDA-KGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSE 281 (537)
Q Consensus 203 Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~ 281 (537)
||+|+..|+.+++++|++ .+..++..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+
T Consensus 162 L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~ 239 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPI 239 (282)
T ss_dssp HHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCcH
Confidence 999999999999999999 4566788875 49999999999999999999999 69999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCC
Q 009331 282 IGVILKEHGVPCGKSIK 298 (537)
Q Consensus 282 i~~~L~~~ga~~~~~~~ 298 (537)
++++|+++|+++.....
T Consensus 240 ~v~~Ll~~ga~~~~~~~ 256 (282)
T 1oy3_D 240 LARLLRAHGAPEPEDGG 256 (282)
T ss_dssp HHHHHHHTTCCCCCCC-
T ss_pred HHHHHHHcCCCcCcCCC
Confidence 99999999999765443
No 32
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-35 Score=291.27 Aligned_cols=248 Identities=24% Similarity=0.286 Sum_probs=207.9
Q ss_pred CCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChH
Q 009331 21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA 100 (537)
Q Consensus 21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 100 (537)
..|.||||.||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.++|++|++.+ .+.+..+..|.||
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tp 109 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIP 109 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHCCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcH
Confidence 4567899999999999999999999876 3567889999999999999999999999987 4456678899999
Q ss_pred HHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHCCcHH
Q 009331 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGHLE 179 (537)
Q Consensus 101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~ 179 (537)
||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++++.. +.++ ...+..+.++++ .
T Consensus 110 L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~~--------~ 179 (299)
T 1s70_B 110 LHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDI-EAARKEEERIML--------R 179 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHH--------H
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCc-hhhhhhhhhHHH--------H
Confidence 99999999999999999999886654 88999999999999999999998876 4333 222333333333 3
Q ss_pred HHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCC
Q 009331 180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD 259 (537)
Q Consensus 180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~ 259 (537)
.+..++..+.......+..|.||||+|+..|+.+++++|++ .+.++|.+|.+|+||||+|+..|+.+++++|++ .|++
T Consensus 180 ~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad 257 (299)
T 1s70_B 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCD 257 (299)
T ss_dssp HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCC
T ss_pred HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHH-cCCC
Confidence 34556666666666678899999999999999999999998 567789999999999999999999999999999 7999
Q ss_pred cccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331 260 KAVINKSRETALDTAEKTGHSEIGVILKE 288 (537)
Q Consensus 260 ~~~~~~~g~t~L~~A~~~~~~~i~~~L~~ 288 (537)
++.+|..|.||+++|.......+.+++.+
T Consensus 258 ~~~~d~~g~t~l~~A~~~~~~~l~~l~~~ 286 (299)
T 1s70_B 258 MEAVNKVGQTAFDVADEDILGYLEELQKK 286 (299)
T ss_dssp TTCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999976544444444433
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=288.41 Aligned_cols=222 Identities=22% Similarity=0.292 Sum_probs=169.4
Q ss_pred ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchh--HHHHHHcccCCCCcHHHHHHHcCCHH-HHHHHHHhCCcccccccC
Q 009331 18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDME--LREMLSKMNQSGETALYVAAEYGYVD-MVREMIRYHDTSLAGIKA 94 (537)
Q Consensus 18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~l~~~~~~g~t~L~~Aa~~g~~~-iv~~Ll~~~~~~~~~~~~ 94 (537)
..|.++.++|+.||+.|+.++|++|++.+.+.. ....++..+..|.||||.|+..++.+ +++.|++.| .+++..|
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d 83 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTS 83 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC--CCTTCCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcC
Confidence 456677899999999999999999999886431 22335667888999999999988764 888999877 4567789
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331 95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174 (537)
Q Consensus 95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 174 (537)
.+|.||||+|+..|+.+++++|++.+++.... +..|.||+|+|+..++.+++++|++.|+++ +..|.+|.||||+|+.
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACS 161 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999887654 889999999999999999999999999998 6679999999999999
Q ss_pred CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCc
Q 009331 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245 (537)
Q Consensus 175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~ 245 (537)
.|+.+++++|+++++++.. .+..|.||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|+++++
T Consensus 162 ~g~~~~v~~Ll~~gadvn~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 162 GGHHELVALLLQHGASINA-SNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TTCGGGHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred CCCHHHHHHHHHCCCCCCc-cccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCc
Confidence 9999999999999998654 58999999999999999999999999 577899999999999999998775
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=273.03 Aligned_cols=231 Identities=22% Similarity=0.286 Sum_probs=204.8
Q ss_pred ccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCC
Q 009331 18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG 97 (537)
Q Consensus 18 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g 97 (537)
..|..+.|+||.|++.|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.+... ....+..|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~ 76 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDV------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIV-DQLGGDLN 76 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTT
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCc------CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc-hhhcCCcC
Confidence 35778999999999999999999999998763 566889999999999999999999999987433 23345669
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCc
Q 009331 98 YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH 177 (537)
Q Consensus 98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 177 (537)
.||||.|+..|+.+++++|++.+.+.... |..|.||||+|+..|+.+++++|+++|+++ ...+.+|.||||.|+..++
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 77 STPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCC
T ss_pred CChhHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCC
Confidence 99999999999999999999998877654 889999999999999999999999999987 6678899999999996665
Q ss_pred -HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc
Q 009331 178 -LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256 (537)
Q Consensus 178 -~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 256 (537)
.+++++|++.+.+.....+..|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|++ .
T Consensus 155 ~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~-~ 232 (240)
T 3eu9_A 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQE-A 232 (240)
T ss_dssp SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-H
T ss_pred hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-h
Confidence 89999999999998766445899999999999999999999995 67789999999999999999999999999998 4
Q ss_pred CCC
Q 009331 257 GVD 259 (537)
Q Consensus 257 g~~ 259 (537)
+.+
T Consensus 233 ~~~ 235 (240)
T 3eu9_A 233 RQA 235 (240)
T ss_dssp C--
T ss_pred hhc
Confidence 444
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.2e-34 Score=270.48 Aligned_cols=217 Identities=22% Similarity=0.273 Sum_probs=157.8
Q ss_pred CCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHH
Q 009331 73 GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE 152 (537)
Q Consensus 73 g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 152 (537)
|+.+++++|++.+.+. ....+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++
T Consensus 2 g~~~~i~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEETTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCc-ccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4556666666655322 222356677777777777777777777777665543 36677777777777777777777777
Q ss_pred cCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCC
Q 009331 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK 232 (537)
Q Consensus 153 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~ 232 (537)
.++......+..|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++. +.+++.+|..
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~ 157 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNR 157 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCC
Confidence 76644455667777777777777777777777777766543 367778888888888888888888874 5667888888
Q ss_pred CCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCC
Q 009331 233 GNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG 294 (537)
Q Consensus 233 G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~ 294 (537)
|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..++.+++++|+++|+...
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred CcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 8888888888888888888888 688888888888888888888888888888888887643
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=9.8e-34 Score=267.17 Aligned_cols=215 Identities=21% Similarity=0.246 Sum_probs=191.4
Q ss_pred CCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHH
Q 009331 34 GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVL 113 (537)
Q Consensus 34 g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv 113 (537)
|+.+++++|++.+.+. ....|..|.||||+|+..|+.+++++|++.+ .+.+..+..|.||||+|+..|+.+++
T Consensus 2 g~~~~i~~Ll~~g~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 2 DAPAVISDFIYQGASL-----HNQTDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVF 74 (223)
T ss_dssp ---CCEETTEETTCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHcCCCc-----ccccCCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence 6788889999988753 2345789999999999999999999999987 44566788999999999999999999
Q ss_pred HHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcc
Q 009331 114 KILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVL 193 (537)
Q Consensus 114 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~ 193 (537)
++|++.++......+..|.||||+|+..|+.+++++|+++++++ ...+..|.||||+|+..|+.+++++|++++.+...
T Consensus 75 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 153 (223)
T 2f8y_A 75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153 (223)
T ss_dssp HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99999988666667899999999999999999999999999987 56788999999999999999999999999988654
Q ss_pred cCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCC
Q 009331 194 RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD 259 (537)
Q Consensus 194 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~ 259 (537)
.|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|++ .|+.
T Consensus 154 -~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~ 216 (223)
T 2f8y_A 154 -QNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLV 216 (223)
T ss_dssp -CCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCS
T ss_pred -cCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHH-cCCC
Confidence 48899999999999999999999999 566789999999999999999999999999998 5654
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.8e-33 Score=274.74 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=197.6
Q ss_pred hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCC
Q 009331 16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR 95 (537)
Q Consensus 16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 95 (537)
....|.+|.||||+|+..|+.+++++|++.+.+.+ . .+|.||||+|+..|+.++|++|++.+. +.+..+.
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~d~ 93 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN------L--LENEFPLHQAATLEDTKIVKILLFSGL--DDSQFDD 93 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS------C--CTTCCHHHHHTTSSSCHHHHHHHHTTC--CTTCCCT
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------C--CCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCC
Confidence 45678899999999999999999999999986542 2 259999999999999999999999874 4566888
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCC-ChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN-TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174 (537)
Q Consensus 96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 174 (537)
.|.||||+|+..|+.+++++|++.++++... |..| .||||+|+..|+.+++++|+++|++... ...|.||||+|+.
T Consensus 94 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~ 170 (285)
T 3kea_A 94 KGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIK 170 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHH
Confidence 9999999999999999999999999887655 7788 8999999999999999999999987622 2278999999999
Q ss_pred CCcHHHHHHHHhcCCCCcccCCCCCChH-HHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331 175 NGHLEIVKALLSKEPGIVLRNDKKGQTA-LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253 (537)
Q Consensus 175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll 253 (537)
.|+.+++++|+++++++.. .|..|.|| ||+|+.+|+.+++++|++ .+.+++..| +.|+..|+.+++++|+
T Consensus 171 ~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~-------~~a~~~~~~~iv~~Ll 241 (285)
T 3kea_A 171 NGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSAN-------LENVLLDDAEIAKMII 241 (285)
T ss_dssp TTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTT-------GGGGTTTCHHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------hhhhhcCCHHHHHHHH
Confidence 9999999999999888654 57889997 999999999999999999 577778777 3567899999999999
Q ss_pred hhcCCCccccc
Q 009331 254 NINGVDKAVIN 264 (537)
Q Consensus 254 ~~~g~~~~~~~ 264 (537)
+ .|++++..+
T Consensus 242 ~-~g~~~~~~~ 251 (285)
T 3kea_A 242 E-KHVEYKSDS 251 (285)
T ss_dssp H-HHHHHTTCT
T ss_pred H-cCCCCCCcc
Confidence 9 677665443
No 38
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4.4e-32 Score=251.53 Aligned_cols=193 Identities=24% Similarity=0.299 Sum_probs=136.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC
Q 009331 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN 175 (537)
Q Consensus 96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 175 (537)
.+.||||.|+..|+.+.++.|++.++......|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 45666666666666666666666665344444666777777777777777777777776665 44566677777777777
Q ss_pred CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCc-----HHHHH
Q 009331 176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR-----VQIVQ 250 (537)
Q Consensus 176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~-----~~iv~ 250 (537)
|+.+++++|++.+.......|..|.||||.|+..|+.+++++|++.++.+++.+|..|+||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 7777777777554444445566777777777777777777777776556677777777777777777776 77777
Q ss_pred HHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331 251 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290 (537)
Q Consensus 251 ~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g 290 (537)
+|++ .|++++.+|..|.|||++|+..|+.+++++|+++|
T Consensus 163 ~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 7777 57777777777777777777777777777777765
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=5e-34 Score=271.88 Aligned_cols=215 Identities=26% Similarity=0.276 Sum_probs=138.7
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc--cccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHH
Q 009331 58 MNQSGETALYVAAEYGYVDMVREMIRYHDTS--LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL 135 (537)
Q Consensus 58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL 135 (537)
+|.+|.||||+|+..|+.++++.|++.+... +.+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.|||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L 82 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPL 82 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHH
Confidence 4566777777777777777777776654321 3455666677777777777777777777776665543 366777777
Q ss_pred HHHHhCCCHHHHHHHHHcCCCc-----ccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331 136 HTASSQGHVEVVKFLLEKGSTL-----ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210 (537)
Q Consensus 136 h~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 210 (537)
|+|+..|+.+++++|++.+.+. ....+..|.||||+|+..|+.+++++|+++++++....+..|.||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 7777777777777777776532 23445566777777777777777777777766654442226777777777777
Q ss_pred CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcc--cccCCCCCHHHHHH
Q 009331 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKA--VINKSRETALDTAE 275 (537)
Q Consensus 211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~--~~~~~g~t~L~~A~ 275 (537)
+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|++ .|++.. ..+..|.||.+.+.
T Consensus 163 ~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 163 NPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp CHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC-
T ss_pred CHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHHHHhhhc
Confidence 7777777776 355567777777777777777777777777776 566554 56666666665543
No 40
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-33 Score=277.20 Aligned_cols=256 Identities=19% Similarity=0.226 Sum_probs=208.0
Q ss_pred HHHHcCCHHHHHHHHhhCCchhH---HHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHH
Q 009331 29 SLVRTGSVELVLDMISSYGDMEL---REMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAA 105 (537)
Q Consensus 29 ~A~~~g~~~~v~~Ll~~~~~~~~---~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa 105 (537)
.+++.|+.+.++.++......+. .......+..|.||||.||..|+.++|++|++.+. +.+..+..|.||||+|+
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~ 81 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA--DINYANVDGLTALHQAC 81 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC--CTTCBCTTCCBHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHHH
Confidence 46777888888888877643211 00012234567899999999999999999999874 45667889999999999
Q ss_pred HcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHH
Q 009331 106 KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185 (537)
Q Consensus 106 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll 185 (537)
..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|+++|+++ ...+.+|.||||+|+..|+.++++.++
T Consensus 82 ~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll 159 (299)
T 1s70_B 82 IDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEV 159 (299)
T ss_dssp HTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence 999999999999999887644 889999999999999999999999999987 567889999999999999999999988
Q ss_pred hcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccC
Q 009331 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINK 265 (537)
Q Consensus 186 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~ 265 (537)
..........+..+.++++ ..+..++..........+..|.||||+|+..|+.+++++|++ .|++++..|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~ 230 (299)
T 1s70_B 160 NRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDY 230 (299)
T ss_dssp HHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCT
T ss_pred hhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCC
Confidence 7644322222222233332 234455555666666778899999999999999999999998 7999999999
Q ss_pred CCCCHHHHHHHcCChhHHHHHHhcCCCCCCCC
Q 009331 266 SRETALDTAEKTGHSEIGVILKEHGVPCGKSI 297 (537)
Q Consensus 266 ~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~ 297 (537)
.|.||||+|+..|+.+++++|+++|+++....
T Consensus 231 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d 262 (299)
T 1s70_B 231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262 (299)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcC
Confidence 99999999999999999999999999876543
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.1e-31 Score=254.85 Aligned_cols=208 Identities=25% Similarity=0.256 Sum_probs=144.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhh----hcCCCCCChHHH
Q 009331 61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELL----MTFDSSNTTALH 136 (537)
Q Consensus 61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~----~~~d~~g~tpLh 136 (537)
.|+||||.|+..|+.++|+.|++.. ..+.+..+..|.||||+|+..|+.+++++|++.+++.. ...|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 4778888888888888888888762 24456677888888888888888888888888887653 234567888888
Q ss_pred HHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHH
Q 009331 137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216 (537)
Q Consensus 137 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~ 216 (537)
+|+..|+.+++++|+++|+++.. .+.. +.+.. .....|..|.||||+|+..|+.++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~-~~~~--~~~~~-------------------~~~~~~~~g~t~L~~A~~~~~~~~v~ 138 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSA-RATG--SVFHY-------------------RPHNLIYYGEHPLSFAACVGSEEIVR 138 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTC-CCCS--GGGSC-------------------CTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCc-ccCC--cceee-------------------cccccccCCCCHHHHHHHcCCHHHHH
Confidence 88888888888888888877632 2221 11100 01223456777777777777777777
Q ss_pred HHHhcCCcccccccCCCCcHHHHHHHhCcHHHH----HHHhhhcCCCc------ccccCCCCCHHHHHHHcCChhHHHHH
Q 009331 217 ELVKVEPVIINMVDAKGNSALHIATRKGRVQIV----QKLLNINGVDK------AVINKSRETALDTAEKTGHSEIGVIL 286 (537)
Q Consensus 217 ~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv----~~Ll~~~g~~~------~~~~~~g~t~L~~A~~~~~~~i~~~L 286 (537)
+|++ .+.+++.+|.+|+||||+|+..++.+++ ++|++ .|+++ +.+|..|.|||++|+..|+.+++++|
T Consensus 139 ~Ll~-~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~L 216 (232)
T 2rfa_A 139 LLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216 (232)
T ss_dssp HHHH-TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHH-CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 7776 3555677777777777777777776666 66666 45555 46677777777777777777777777
Q ss_pred HhcCCCC
Q 009331 287 KEHGVPC 293 (537)
Q Consensus 287 ~~~ga~~ 293 (537)
+++|...
T Consensus 217 l~~g~~~ 223 (232)
T 2rfa_A 217 MQKRKHI 223 (232)
T ss_dssp HHHHHHC
T ss_pred HhcCccc
Confidence 7776554
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=1.1e-31 Score=254.76 Aligned_cols=175 Identities=23% Similarity=0.221 Sum_probs=141.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHh-CChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcc----cccccCCCcHHH
Q 009331 96 NGYDAFHIAAKQGCLEVLKILMEA-LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA----TIARSNGKTALH 170 (537)
Q Consensus 96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~ 170 (537)
.|.||||.|+..|+.+++++|++. +.++ ...|..|+||||+|+..|+.+++++|++.++++. ...|.+|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 478888888888888888888887 4444 4458888888888888888888888888887653 234567888888
Q ss_pred HHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHH
Q 009331 171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQ 250 (537)
Q Consensus 171 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~ 250 (537)
+|+..|+.+++++|++++++.... +.. +.+ ....+..|.+|+||||+|+..|+.++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~~--~~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 138 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSAR-ATG--SVF-------------------HYRPHNLIYYGEHPLSFAACVGSEEIVR 138 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCC-CCS--GGG-------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcc-cCC--cce-------------------eecccccccCCCCHHHHHHHcCCHHHHH
Confidence 888888888888888887775432 111 111 1124567789999999999999999999
Q ss_pred HHhhhcCCCcccccCCCCCHHHHHHHcCChhHH----HHHHhcCCCCC
Q 009331 251 KLLNINGVDKAVINKSRETALDTAEKTGHSEIG----VILKEHGVPCG 294 (537)
Q Consensus 251 ~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~----~~L~~~ga~~~ 294 (537)
+|++ .|++++.+|..|.||||+|+..++.+++ ++|+++|++..
T Consensus 139 ~Ll~-~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 139 LLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp HHHH-TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHH-CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence 9999 6999999999999999999999999888 99999999763
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=6.8e-33 Score=264.03 Aligned_cols=202 Identities=21% Similarity=0.218 Sum_probs=178.8
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHhCCh---hhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcH
Q 009331 92 IKARNGYDAFHIAAKQGCLEVLKILMEALPE---LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA 168 (537)
Q Consensus 92 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp 168 (537)
..|.+|.||||+|+..|+.+++++|++.++. .....|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence 3578899999999999999999999998764 34556889999999999999999999999999987 6678899999
Q ss_pred HHHHHHCCcHHHHHHHHhcCCCC-----cccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccC-CCCcHHHHHHH
Q 009331 169 LHSAARNGHLEIVKALLSKEPGI-----VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA-KGNSALHIATR 242 (537)
Q Consensus 169 L~~A~~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~-~G~T~Lh~A~~ 242 (537)
||+|+..|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++|++ .+.+++.+|. .|+||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHH
Confidence 99999999999999999998642 45567889999999999999999999999 4667889997 99999999999
Q ss_pred hCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCC
Q 009331 243 KGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKS 296 (537)
Q Consensus 243 ~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~ 296 (537)
.|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|++....
T Consensus 161 ~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 213 (236)
T 1ikn_D 161 LQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM 213 (236)
T ss_dssp TTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSS
T ss_pred cCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhc
Confidence 999999999999 69999999999999999999999999999999999976533
No 44
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=8.1e-33 Score=277.00 Aligned_cols=243 Identities=18% Similarity=0.157 Sum_probs=185.7
Q ss_pred hccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHc-----------ccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 009331 17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSK-----------MNQSGETALYVAAEYGYVDMVREMIRYH 85 (537)
Q Consensus 17 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~-----------~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~ 85 (537)
...+..|.++++ |+.++++.|++++.+++...+... ......+.+|+|+..+..++++.|++.+
T Consensus 46 ~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g 120 (327)
T 1sw6_A 46 MKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 120 (327)
T ss_dssp EECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSC
T ss_pred ccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcC
Confidence 345677888887 999999999999865443222111 1111233468888888889999998876
Q ss_pred Ccccccc-cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCC---HHHHHHHHHcCCCccccc
Q 009331 86 DTSLAGI-KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH---VEVVKFLLEKGSTLATIA 161 (537)
Q Consensus 86 ~~~~~~~-~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~ 161 (537)
.+++. .+..|.||||+|+..|+.+++++|+++++++.. .|..|+||||+|+..|+ .++++.|++.+.......
T Consensus 121 --~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~-~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~ 197 (327)
T 1sw6_A 121 --LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197 (327)
T ss_dssp --CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred --CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC
Confidence 45566 789999999999999999999999999988764 48999999999999998 688888888864334778
Q ss_pred ccCCCcHHHHHHH----CCcHHHHHHHHhc--------------------CCCCcccCCCCCChHHHHHHhcCCHHHHHH
Q 009331 162 RSNGKTALHSAAR----NGHLEIVKALLSK--------------------EPGIVLRNDKKGQTALHMAVKGQSIELVDE 217 (537)
Q Consensus 162 ~~~g~tpL~~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~ 217 (537)
|..|.||||+|+. .|+.+++++|++. +.++. ..+..|.||||.|+. +++
T Consensus 198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~g~t~L~~a~~------~~~ 270 (327)
T 1sw6_A 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN-DKNGERKDSILENLD------LKW 270 (327)
T ss_dssp CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHH
T ss_pred CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc-cccccCCChhHHHHH------HHH
Confidence 9999999999999 9999999999987 44443 457899999999996 888
Q ss_pred HHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcC
Q 009331 218 LVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTG 278 (537)
Q Consensus 218 Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~ 278 (537)
|++. .+|.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|
T Consensus 271 Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 271 IIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence 8886 489999999999999999999999999998 79999999999999999998654
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=9.6e-31 Score=242.44 Aligned_cols=192 Identities=23% Similarity=0.276 Sum_probs=148.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHH
Q 009331 60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139 (537)
Q Consensus 60 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~ 139 (537)
..+.||||.|+..|+.+.++.|+..+. .+.+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~ 80 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSISDSPYLYAG 80 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHH
Confidence 456778888888888888888887642 24555677788888888888888888888888776554 3777888888888
Q ss_pred hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCC-----HHH
Q 009331 140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS-----IEL 214 (537)
Q Consensus 140 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~ 214 (537)
..|+.+++++|++.+.......+..|.||||.|+..|+.+++++|++.++......|..|.||||+|+..++ .++
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 888888888888554433366677788888888888888888888888744455567788888888888777 888
Q ss_pred HHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254 (537)
Q Consensus 215 v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 254 (537)
+++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++
T Consensus 161 v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 161 VKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 888888 466678888888888888888888888888887
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.4e-31 Score=260.90 Aligned_cols=214 Identities=16% Similarity=0.200 Sum_probs=142.4
Q ss_pred HcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc--ccc----ccCCCCChHHHHHHHc---CCHHHHHHHHHhCChhh--
Q 009331 56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTS--LAG----IKARNGYDAFHIAAKQ---GCLEVLKILMEALPELL-- 124 (537)
Q Consensus 56 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~--~~~----~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~-- 124 (537)
+..|..|.||||.|++.|+.++|+.|++.+... ... ..+..|.||||+|+.. |+.+++++|++.+++..
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 446788888999999999888888888753111 111 2467888888888876 88888888888865421
Q ss_pred ----h----cCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCC
Q 009331 125 ----M----TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND 196 (537)
Q Consensus 125 ----~----~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d 196 (537)
+ ..|..|.||||+|+..|+.+++++|+++|+++ ...+..+. .. .......+
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~------------------~~--~~~~~~~~ 145 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDF------------------FK--KTKGRPGF 145 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGG------------------GS--SCSSSCCC
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cccccccc------------------cc--cccccccc
Confidence 1 13457777888888777888888887777776 33333210 00 00011223
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHhc--CCcccccccCCCCcHHHHHHHhCc---------HHHHHHHhhhcCCCcc----
Q 009331 197 KKGQTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATRKGR---------VQIVQKLLNINGVDKA---- 261 (537)
Q Consensus 197 ~~g~t~Lh~A~~~~~~~~v~~Ll~~--~~~~~n~~d~~G~T~Lh~A~~~~~---------~~iv~~Ll~~~g~~~~---- 261 (537)
..|.||||+|+..|+.+++++|++. .+.+++.+|.+|+||||+|+..++ .+++++|++ .|++++
T Consensus 146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~ 224 (273)
T 2pnn_A 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLK 224 (273)
T ss_dssp CSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccc
Confidence 4677777777777777777777774 455667777777777777777766 677777776 566665
Q ss_pred ---cccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331 262 ---VINKSRETALDTAEKTGHSEIGVILKEHGV 291 (537)
Q Consensus 262 ---~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga 291 (537)
.+|..|.|||++|+..|+.+++++|+++|+
T Consensus 225 ~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 467777777777777777777777777777
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=3.3e-31 Score=255.57 Aligned_cols=207 Identities=18% Similarity=0.178 Sum_probs=144.1
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHhCCcccccc----cCCCCChHHHHHHHc---CCHHHHHHHHHhCChhhhc---
Q 009331 61 SGETALYVAAEYGYVD----MVREMIRYHDTSLAGI----KARNGYDAFHIAAKQ---GCLEVLKILMEALPELLMT--- 126 (537)
Q Consensus 61 ~g~t~L~~Aa~~g~~~----iv~~Ll~~~~~~~~~~----~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~--- 126 (537)
.|+||||.|+..|+.+ ++++|++.+. +.+. .+..|.||||+|+.. |+.+++++|++.+++....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~--~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK--YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC--CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCC--CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 3677777777777776 4455555542 3333 566777777777777 7777777777776654321
Q ss_pred -------CCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCC
Q 009331 127 -------FDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG 199 (537)
Q Consensus 127 -------~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g 199 (537)
.|..|.||||+|+..|+.+++++|+++|+++ ...+..+.++ .+ ....|..|
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~--------------------~~-~~~~~~~g 136 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQ--------------------KH-QGTCFYFG 136 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGS--------------------CC-SSSCCCSC
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccccccc--------------------cc-ccccccCC
Confidence 1345666666666666666666666666665 2233322110 00 11123348
Q ss_pred ChHHHHHHhcCCHHHHHHHHhc--CCcccccccCCCCcHHHHHHH--hCcHH-------HHHHHhhhcCCCc-------c
Q 009331 200 QTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATR--KGRVQ-------IVQKLLNINGVDK-------A 261 (537)
Q Consensus 200 ~t~Lh~A~~~~~~~~v~~Ll~~--~~~~~n~~d~~G~T~Lh~A~~--~~~~~-------iv~~Ll~~~g~~~-------~ 261 (537)
.||||+|+..|+.+++++|++. .+.++|.+|.+|+||||+|+. .++.+ ++++|++ .|+++ +
T Consensus 137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~ 215 (256)
T 2etb_A 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEE 215 (256)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGG
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCccccccccc
Confidence 8888888888888888888885 566788888888999999888 67777 8888888 68888 8
Q ss_pred cccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331 262 VINKSRETALDTAEKTGHSEIGVILKEHGVP 292 (537)
Q Consensus 262 ~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~ 292 (537)
.+|..|.||||+|+..|+.+++++|+++|.+
T Consensus 216 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 216 ISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 8888999999999999999999999888754
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=3.1e-31 Score=258.36 Aligned_cols=183 Identities=17% Similarity=0.127 Sum_probs=125.0
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHHhCC----hhh---hcCCCCCChHHHHHHhC---CCHHHHHHHHHcCCCccc-
Q 009331 91 GIKARNGYDAFHIAAKQGCLEVLKILMEALP----ELL---MTFDSSNTTALHTASSQ---GHVEVVKFLLEKGSTLAT- 159 (537)
Q Consensus 91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~----~~~---~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~- 159 (537)
...+..|.||||.|+..|+.++++.|++.+. .+. ...|..|.||||+|+.. |+.+++++|++.|++...
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 3457778888888888888888888887432 221 13467888888888876 888888888888754311
Q ss_pred ---------ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 009331 160 ---------IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD 230 (537)
Q Consensus 160 ---------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d 230 (537)
..|..|.||||+|+..|+.+++++|+++++++... +..+. . .....+..|
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~------------------~--~~~~~~~~~ 145 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDF------------------F--KKTKGRPGF 145 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGG------------------G--SSCSSSCCC
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-ccccc------------------c--ccccccccc
Confidence 02234445555555555555555554444443222 11110 0 011123334
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHhhh--cCCCcccccCCCCCHHHHHHHcCC---------hhHHHHHHhcCCCCC
Q 009331 231 AKGNSALHIATRKGRVQIVQKLLNI--NGVDKAVINKSRETALDTAEKTGH---------SEIGVILKEHGVPCG 294 (537)
Q Consensus 231 ~~G~T~Lh~A~~~~~~~iv~~Ll~~--~g~~~~~~~~~g~t~L~~A~~~~~---------~~i~~~L~~~ga~~~ 294 (537)
..|+||||+|+..|+.+++++|++. .|++++.+|..|.||||+|+..++ .+++++|+++|++..
T Consensus 146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220 (273)
T ss_dssp CSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence 4899999999999999999999985 699999999999999999999988 789999999998875
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.6e-30 Score=249.29 Aligned_cols=204 Identities=22% Similarity=0.309 Sum_probs=136.7
Q ss_pred CCCChHHHHHHcCCHHHHHHHHh----hCCchhHHHHHHc----ccCCCCcHHHHHHHc---CCHHHHHHHHHhCCcccc
Q 009331 22 RDDTPLQSLVRTGSVELVLDMIS----SYGDMELREMLSK----MNQSGETALYVAAEY---GYVDMVREMIRYHDTSLA 90 (537)
Q Consensus 22 ~~~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~l~~----~~~~g~t~L~~Aa~~---g~~~iv~~Ll~~~~~~~~ 90 (537)
.|.||||.|++.|+.+.++.+++ .+ ..++. .|..|.||||+|+.. |+.++|++|++.+.....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g------~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~ 74 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS------KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN 74 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHT------CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcC------CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccc
Confidence 37899999999999986655544 43 23455 788999999999999 999999999998744321
Q ss_pred ---------cccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCccccc
Q 009331 91 ---------GIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161 (537)
Q Consensus 91 ---------~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~ 161 (537)
...|..|.||||+|+..|+.+++++|++.++++... |..+.++ .+. ...
T Consensus 75 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~--------------------~~~-~~~ 132 (256)
T 2etb_A 75 PKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQ--------------------KHQ-GTC 132 (256)
T ss_dssp SSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGS--------------------CCS-SSC
T ss_pred hhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-ccccccc--------------------ccc-ccc
Confidence 113467999999999999999999999999887654 4431110 000 112
Q ss_pred ccCCCcHHHHHHHCCcHHHHHHHHh---cCCCCcccCCCCCChHHHHHHh--cCCHH-------HHHHHHhcCCccc---
Q 009331 162 RSNGKTALHSAARNGHLEIVKALLS---KEPGIVLRNDKKGQTALHMAVK--GQSIE-------LVDELVKVEPVII--- 226 (537)
Q Consensus 162 ~~~g~tpL~~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~~~~~~--- 226 (537)
+..|.||||+|+..|+.+++++|++ .+.++. ..|..|+||||+|+. +++.+ ++++|++. +.++
T Consensus 133 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~ 210 (256)
T 2etb_A 133 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPT 210 (256)
T ss_dssp CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccc
Confidence 2234444444444444444444444 343332 224455555555554 44444 66666663 3334
Q ss_pred ----ccccCCCCcHHHHHHHhCcHHHHHHHhhh
Q 009331 227 ----NMVDAKGNSALHIATRKGRVQIVQKLLNI 255 (537)
Q Consensus 227 ----n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 255 (537)
+.+|..|+||||+|+..|+.+++++|+++
T Consensus 211 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 211 VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 77888888888888888888888888873
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.8e-29 Score=227.23 Aligned_cols=157 Identities=33% Similarity=0.500 Sum_probs=115.2
Q ss_pred hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212 (537)
Q Consensus 133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 212 (537)
++|+.||..|+.++|++|+++|+++ +..|.+|.||||+|+..++.++++.|++.+.++.. .|..|+||||+|+.+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~-~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh-hccCCCCHHHHHHHcCCH
Confidence 3577777777777777777777776 45677777777777777777777777777776543 367777777777777777
Q ss_pred HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 292 (537)
Q Consensus 213 ~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~ 292 (537)
+++++|++ .+.++|.+|.+|+||||+|+..|+.+++++|++ .|++++.+|.+|.|||++|+..|+.+++++|+++||+
T Consensus 84 ~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 84 EVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 77777777 455677777788888888888888888888877 6778888888888888888888888888888888776
Q ss_pred C
Q 009331 293 C 293 (537)
Q Consensus 293 ~ 293 (537)
.
T Consensus 162 i 162 (169)
T 4gpm_A 162 L 162 (169)
T ss_dssp -
T ss_pred c
Confidence 4
No 51
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=4.9e-31 Score=264.05 Aligned_cols=252 Identities=17% Similarity=0.105 Sum_probs=192.6
Q ss_pred CCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc--------
Q 009331 21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI-------- 92 (537)
Q Consensus 21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~-------- 92 (537)
....+|+| ....+++++|++++.+ ++..+..|.|+++ |+.++|+.|++.+.......
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~ga~------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~ 85 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSSPLK------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNND 85 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTSSCC------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------
T ss_pred cccccchh----hhcCchHHHHhhCCcc------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcc
Confidence 44556666 3556789999999976 4667889999988 99999999999873321100
Q ss_pred -------cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCC
Q 009331 93 -------KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG 165 (537)
Q Consensus 93 -------~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g 165 (537)
......+.+|.|+..+..+++++|++.+.++....|..|+||||+|+..|+.++|++|+++|+++ ...|.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g 164 (327)
T 1sw6_A 86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMG 164 (327)
T ss_dssp ------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTC
T ss_pred cccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCC
Confidence 11112234588888888899999999988877646999999999999999999999999999998 6789999
Q ss_pred CcHHHHHHHCCc---HHHHHHHHhcCCCCcccCCCCCChHHHHHHh----cCCHHHHHHHHhcC----------------
Q 009331 166 KTALHSAARNGH---LEIVKALLSKEPGIVLRNDKKGQTALHMAVK----GQSIELVDELVKVE---------------- 222 (537)
Q Consensus 166 ~tpL~~A~~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~~---------------- 222 (537)
.||||+|+..|+ .++++.|++.+.......|..|+||||+|+. .|+.+++++|++..
T Consensus 165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~ 244 (327)
T 1sw6_A 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244 (327)
T ss_dssp CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence 999999999998 6777788777644456678999999999999 99999999999853
Q ss_pred ---CcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCCCC
Q 009331 223 ---PVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI 297 (537)
Q Consensus 223 ---~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~~~ 297 (537)
+.+++.+|..|+||||.|+. +++|++. +++.+|..|.||||+|+..|+.+++++|+++|+++....
T Consensus 245 ~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d 313 (327)
T 1sw6_A 245 NEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 313 (327)
T ss_dssp ---------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred hcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 67889999999999999986 8899885 689999999999999999999999999999999876543
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=5.8e-29 Score=223.90 Aligned_cols=159 Identities=35% Similarity=0.477 Sum_probs=114.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331 99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178 (537)
Q Consensus 99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 178 (537)
++|+.||..|+.++|+.|++.+++++. .|..|+||||+|+..++.+++++|++.|+++ ...|.+|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~-~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence 357777777777777777777766543 3677777777777777777777777777776 45677777777777777777
Q ss_pred HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258 (537)
Q Consensus 179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~ 258 (537)
+++++|+++++++.. .|..|+||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .|+
T Consensus 84 ~~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA 160 (169)
T 4gpm_A 84 EVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK-QGG 160 (169)
T ss_dssp HHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT-C--
T ss_pred HHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence 777777777776543 46777888888888888888888887 456677888888888888888888888888887 677
Q ss_pred Cccc
Q 009331 259 DKAV 262 (537)
Q Consensus 259 ~~~~ 262 (537)
+++.
T Consensus 161 ~ie~ 164 (169)
T 4gpm_A 161 WLEH 164 (169)
T ss_dssp ----
T ss_pred CcCC
Confidence 7653
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=2.2e-30 Score=250.33 Aligned_cols=213 Identities=18% Similarity=0.157 Sum_probs=135.4
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHH----hCCcccccc--cCCCCChHHHHHH---HcCCHHHHHHHHHhCChhh-----
Q 009331 59 NQSGETALYVAAEYGYVDMVREMIR----YHDTSLAGI--KARNGYDAFHIAA---KQGCLEVLKILMEALPELL----- 124 (537)
Q Consensus 59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~----~~~~~~~~~--~~~~g~t~Lh~Aa---~~g~~~iv~~Ll~~~~~~~----- 124 (537)
+..|.|+||.|++.|+.+.|+.|++ .+....... .+..|.||||+|+ ..|+.+++++|++.+.+..
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4567777777777777775444444 543322111 2255777777777 5577777777777654321
Q ss_pred -----hcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCC
Q 009331 125 -----MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG 199 (537)
Q Consensus 125 -----~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g 199 (537)
...|..|.||||+|+..|+.+++++|+++|+++. ..+..+.. .+......+..|
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~--------------------~~~~~~~~~~~g 140 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFF--------------------QPKDEGGYFYFG 140 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCC--------------------SSSCCCCSCCSC
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-cccccccc--------------------CcccccccccCC
Confidence 1112355555555555555555555555555542 22211000 000001112567
Q ss_pred ChHHHHHHhcCCHHHHHHHHhc--CCcccccccCCCCcHHHHHHHhCc---------HHHHHHHhhhcCCCc-------c
Q 009331 200 QTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATRKGR---------VQIVQKLLNINGVDK-------A 261 (537)
Q Consensus 200 ~t~Lh~A~~~~~~~~v~~Ll~~--~~~~~n~~d~~G~T~Lh~A~~~~~---------~~iv~~Ll~~~g~~~-------~ 261 (537)
.||||+|+..|+.+++++|++. .+.+++.+|.+|+||||+|+..++ .+++++|++ .|+++ +
T Consensus 141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~ 219 (260)
T 3jxi_A 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEA 219 (260)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGG
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhh
Confidence 8888888888888888888874 466678888888888888887776 688888887 57777 6
Q ss_pred cccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331 262 VINKSRETALDTAEKTGHSEIGVILKEHGVPC 293 (537)
Q Consensus 262 ~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~ 293 (537)
..|..|.||||+|+..|+.+++++|+++|+..
T Consensus 220 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 220 LLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 78888888888888888888888888887653
No 54
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=245.65 Aligned_cols=189 Identities=26% Similarity=0.323 Sum_probs=104.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCCh-hhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH----
Q 009331 99 DAFHIAAKQGCLEVLKILMEALPE-LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA---- 173 (537)
Q Consensus 99 t~Lh~Aa~~g~~~iv~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~---- 173 (537)
+++|.|+..|+.+.++.+++...+ ..+..|..|.||||+|+..|+.+++++|++.|+......+..|.||||.|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 445555555555555555544333 123335555555555555555555555555555222445555555555555
Q ss_pred -HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331 174 -RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252 (537)
Q Consensus 174 -~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L 252 (537)
..++.++++.|++.+... ...+..|+||||+|+.+|+.+++++|++ .+.++|.+|.+|+||||+|+..|+.+++++|
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 335555555555555433 2234555666666666666666666665 3444555666666666666666666666666
Q ss_pred hhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhc
Q 009331 253 LNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289 (537)
Q Consensus 253 l~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ 289 (537)
++..|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus 236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 6545566666666666666666666666666666554
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3.2e-29 Score=242.11 Aligned_cols=204 Identities=22% Similarity=0.258 Sum_probs=141.0
Q ss_pred CCCCCChHHHHHHcCCHHHHHHHHh----hCCchhHHHHHHcccCCCCcHHHHHH---HcCCHHHHHHHHHhCCc-----
Q 009331 20 AKRDDTPLQSLVRTGSVELVLDMIS----SYGDMELREMLSKMNQSGETALYVAA---EYGYVDMVREMIRYHDT----- 87 (537)
Q Consensus 20 ~~~~~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~l~~~~~~g~t~L~~Aa---~~g~~~iv~~Ll~~~~~----- 87 (537)
+..+.++||.||+.|+.+.++.|++ .+.+.+... ...+..|.||||+|+ ..|+.++|++|++.+..
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE--FREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG--GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh--hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 5678999999999999999999999 565532211 122377999999999 77999999999998633
Q ss_pred ----ccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCC--------------CCCChHHHHHHhCCCHHHHHH
Q 009331 88 ----SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFD--------------SSNTTALHTASSQGHVEVVKF 149 (537)
Q Consensus 88 ----~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~ 149 (537)
......|..|.||||+|+..|+.+++++|++.++++... + ..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 223334558999999999999999999999999887654 4 345566666666666666666
Q ss_pred HHH---cCCCcccccccCCCcHHHHHHHCCc--HHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCc
Q 009331 150 LLE---KGSTLATIARSNGKTALHSAARNGH--LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPV 224 (537)
Q Consensus 150 Ll~---~~~~~~~~~~~~g~tpL~~A~~~g~--~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~ 224 (537)
|++ .|+++ +..|.+|.||||+|+..|+ .+..+. ..+++++|++. +.
T Consensus 159 Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~---------------------------~~~~v~~Ll~~-ga 209 (260)
T 3jxi_A 159 LTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKF---------------------------VTKMYDLLLIK-CA 209 (260)
T ss_dssp HHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHH---------------------------HHHHHHHHHHH-HH
T ss_pred HHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHH---------------------------HHHHHHHHHHh-Cc
Confidence 666 55554 3445555555555554443 000000 03455555552 22
Q ss_pred cc-------ccccCCCCcHHHHHHHhCcHHHHHHHhhh
Q 009331 225 II-------NMVDAKGNSALHIATRKGRVQIVQKLLNI 255 (537)
Q Consensus 225 ~~-------n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 255 (537)
++ +.+|.+|+||||+|+..|+.+++++|+++
T Consensus 210 ~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 23 66778888888888888888888888873
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=239.26 Aligned_cols=197 Identities=23% Similarity=0.271 Sum_probs=178.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHH
Q 009331 60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139 (537)
Q Consensus 60 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~ 139 (537)
..+.+++|.|+..|+.+.++.+++.+.+...+..|.+|.||||+|+..|+.+++++|++.++......|..|.||||+|+
T Consensus 74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 34578999999999999999998876555577889999999999999999999999999998555667999999999999
Q ss_pred -----hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHH
Q 009331 140 -----SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL 214 (537)
Q Consensus 140 -----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~ 214 (537)
..++.+++++|++.|... ...+..|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.++
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~-~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNV-QDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHCCCHHH
Confidence 668899999999999776 56788899999999999999999999999998654 48999999999999999999
Q ss_pred HHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258 (537)
Q Consensus 215 v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~ 258 (537)
+++|++..+.+++.+|.+|+||||+|+..|+.+++++|+++.++
T Consensus 232 v~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 99999977888999999999999999999999999999996553
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=7.5e-28 Score=217.35 Aligned_cols=170 Identities=27% Similarity=0.289 Sum_probs=121.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG 176 (537)
Q Consensus 97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 176 (537)
+.+|||.|+..|+.++++.|++.++......|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 3467777777777777777777777656666777777777777777777777777777776 455677777777777777
Q ss_pred cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc
Q 009331 177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN 256 (537)
Q Consensus 177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 256 (537)
+.+++++|++++.++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|++ .
T Consensus 81 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~ 157 (172)
T 3v30_A 81 YTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIEN-H 157 (172)
T ss_dssp CHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHH-H
Confidence 7777777777777654 336777788888888888888888877 456677777888888888888888888888877 5
Q ss_pred CCCcccccCCCCCH
Q 009331 257 GVDKAVINKSRETA 270 (537)
Q Consensus 257 g~~~~~~~~~g~t~ 270 (537)
+++....+..|.||
T Consensus 158 ~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 ILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHSCC-------
T ss_pred HHHHhcccCCCCCC
Confidence 66777666666665
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.6e-27 Score=219.27 Aligned_cols=161 Identities=30% Similarity=0.299 Sum_probs=105.1
Q ss_pred cCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHH
Q 009331 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 205 (537)
Q Consensus 126 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~ 205 (537)
..|..|.||||+|+..|+.+++++|++.+.++ ...+..|.||||+|+..|+.+++++|++.++++. ..|..|.||||+
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~ 107 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMW 107 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHH
Confidence 34556666666666666666666666666554 3445556666666666666666666666665543 235666666666
Q ss_pred HHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHH
Q 009331 206 AVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 285 (537)
Q Consensus 206 A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~ 285 (537)
|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..|+.+++++
T Consensus 108 A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~ 185 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKI 185 (192)
T ss_dssp HHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence 666666666666666 345566667777777777777777777777776 466777777777777777777777777777
Q ss_pred HHhcC
Q 009331 286 LKEHG 290 (537)
Q Consensus 286 L~~~g 290 (537)
|+++|
T Consensus 186 Ll~~~ 190 (192)
T 2rfm_A 186 FTEVR 190 (192)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 66643
No 59
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=4e-30 Score=260.67 Aligned_cols=156 Identities=23% Similarity=0.249 Sum_probs=76.1
Q ss_pred CCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCccc-ccccCCCCChH
Q 009331 22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSL-AGIKARNGYDA 100 (537)
Q Consensus 22 ~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~-~~~~~~~g~t~ 100 (537)
++.||||+|++.|+.++|++|++.+.+... ....+..|.||||+||..|+.++|++|++.+.+.. .+..+.+ .||
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~---~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEI---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSS---CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHH---HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence 334555555555555555555555431100 00112234455555555555555555555542210 1111111 555
Q ss_pred HHHHHHcCCHHHHHHHHHhCChhhh-cCCCCCChHHHHHH-hCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331 101 FHIAAKQGCLEVLKILMEALPELLM-TFDSSNTTALHTAS-SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178 (537)
Q Consensus 101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~-~~d~~g~tpLh~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 178 (537)
||+|+..|+.+++++|++++++... ..|..|.||||+|+ ..|+.++|++|++.|+ .|.||||.|+..|+.
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~ 238 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEK 238 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCH
Confidence 5555555555555555555554332 12444555555555 5555555555555432 145555555555555
Q ss_pred HHHHHHHhcCC
Q 009331 179 EIVKALLSKEP 189 (537)
Q Consensus 179 ~iv~~Ll~~~~ 189 (537)
+++++|++.+.
T Consensus 239 evv~lL~~~ga 249 (376)
T 2aja_A 239 YVNPFIARHVN 249 (376)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHhcCc
Confidence 55555555443
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.2e-26 Score=208.94 Aligned_cols=158 Identities=33% Similarity=0.473 Sum_probs=102.3
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHh
Q 009331 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208 (537)
Q Consensus 129 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 208 (537)
..+.+||+.|+..|+.+++++|+++|.++ +..|.+|.||||.|+..|+.+++++|++++.+.. ..|..|.||||.|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAAL 89 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH
Confidence 34456666666666666666666666555 3445566666666666666666666666655543 235566666666666
Q ss_pred cCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHh
Q 009331 209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 288 (537)
Q Consensus 209 ~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~ 288 (537)
.|+.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|++ .|++++.+|..|.||+++|+..++.+++++|++
T Consensus 90 ~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 90 FGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp TTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 666666666666 345566667777777777777777777777776 567777777777777777777777777777766
Q ss_pred cC
Q 009331 289 HG 290 (537)
Q Consensus 289 ~g 290 (537)
.|
T Consensus 168 ~G 169 (169)
T 2y1l_E 168 LN 169 (169)
T ss_dssp C-
T ss_pred cC
Confidence 54
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=6.1e-27 Score=210.28 Aligned_cols=158 Identities=24% Similarity=0.324 Sum_probs=100.7
Q ss_pred CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210 (537)
Q Consensus 131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 210 (537)
|.||||.|+..|+.+++++|++.+.++ ...|..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||.|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcC
Confidence 456666666666666666666665554 34455566666666666666666666666555432 3556666666666666
Q ss_pred CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290 (537)
Q Consensus 211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g 290 (537)
+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|++ .|++++..|..|.||+++|+..|+.+++++|++++
T Consensus 81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 81 YTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 66666666663 44566666777777777777777777777776 56677777777777777777777777777776655
Q ss_pred CC
Q 009331 291 VP 292 (537)
Q Consensus 291 a~ 292 (537)
++
T Consensus 159 ~~ 160 (167)
T 3v31_A 159 LK 160 (167)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=1.4e-26 Score=213.00 Aligned_cols=157 Identities=24% Similarity=0.239 Sum_probs=77.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Q 009331 94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA 173 (537)
Q Consensus 94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 173 (537)
|..|.||||.|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++.|+++ ...|..|.||||+|+
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 109 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSI 109 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhcccccc-ccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence 33444444444444444444444444333222 2444444444444444444444444444443 333444455555555
Q ss_pred HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331 174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253 (537)
Q Consensus 174 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll 253 (537)
..|+.+++++|++.++++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|+
T Consensus 110 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 110 IFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp HHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 5555555555555444432 224555555555555555555555555 24445555555666666666666666666555
Q ss_pred h
Q 009331 254 N 254 (537)
Q Consensus 254 ~ 254 (537)
+
T Consensus 188 ~ 188 (192)
T 2rfm_A 188 E 188 (192)
T ss_dssp H
T ss_pred h
Confidence 4
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=8e-27 Score=210.56 Aligned_cols=161 Identities=27% Similarity=0.343 Sum_probs=149.4
Q ss_pred CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210 (537)
Q Consensus 131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 210 (537)
+.||||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-hcccCCCHHHHHHHCC
Confidence 468999999999999999999999886678899999999999999999999999999988654 4789999999999999
Q ss_pred CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290 (537)
Q Consensus 211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g 290 (537)
+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|
T Consensus 81 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 9999999999 567789999999999999999999999999999 79999999999999999999999999999999998
Q ss_pred CCCC
Q 009331 291 VPCG 294 (537)
Q Consensus 291 a~~~ 294 (537)
++..
T Consensus 159 ~~~~ 162 (172)
T 3v30_A 159 LKLF 162 (172)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 7643
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=8.1e-27 Score=208.20 Aligned_cols=154 Identities=25% Similarity=0.414 Sum_probs=69.9
Q ss_pred hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212 (537)
Q Consensus 133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 212 (537)
||||.|+..|+.+++++|+++|.++ ...+..|.||||.|+. |+.+++++|++.+.++.. .|..|.||||.|+..|+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 7 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-KDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCH
T ss_pred hHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCH
Confidence 4444444444444444444444433 2333444444444444 444444444444433322 234444444444444444
Q ss_pred HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCC-cccccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVD-KAVINKSRETALDTAEKTGHSEIGVILKEHGV 291 (537)
Q Consensus 213 ~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga 291 (537)
+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .|++ ++..|..|.|||++|+..++.+++++|+++|+
T Consensus 84 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 84 DTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 44444444 233344444455555555555555555555554 2333 34444555555555555555555555555544
No 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=1.4e-26 Score=206.70 Aligned_cols=159 Identities=27% Similarity=0.384 Sum_probs=144.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHC
Q 009331 96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN 175 (537)
Q Consensus 96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 175 (537)
...||||.|+..|+.+++++|++.+.++.. .|..|.||||+|+. |+.+++++|+++|+++ ...+..|.||||.|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccc-cCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 467999999999999999999999887754 48899999999999 9999999999999987 56788999999999999
Q ss_pred CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhh
Q 009331 176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNI 255 (537)
Q Consensus 176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 255 (537)
|+.+++++|++++.++.. .|..|.||||+|+..|+.+++++|++.+...++.+|..|+||||+|+..|+.+++++|++
T Consensus 81 ~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~- 158 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA- 158 (162)
T ss_dssp TCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred CCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-
Confidence 999999999999988654 588999999999999999999999997777789999999999999999999999999998
Q ss_pred cCCC
Q 009331 256 NGVD 259 (537)
Q Consensus 256 ~g~~ 259 (537)
.|+|
T Consensus 159 ~GAd 162 (162)
T 1ihb_A 159 NGAG 162 (162)
T ss_dssp TC--
T ss_pred hCCC
Confidence 5654
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=4.1e-26 Score=204.84 Aligned_cols=154 Identities=25% Similarity=0.297 Sum_probs=84.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG 176 (537)
Q Consensus 97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 176 (537)
|.||||.|+..|+.+++++|++.+..+. ..|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||.|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcC
Confidence 4455555555555555555555544332 22445555555555555555555555555544 334455555555555555
Q ss_pred cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331 177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254 (537)
Q Consensus 177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 254 (537)
+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++
T Consensus 81 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp CHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 5555555555555433 224555666666666666666666665 344455666666666666666666666666665
No 67
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=1.1e-26 Score=208.05 Aligned_cols=160 Identities=29% Similarity=0.369 Sum_probs=107.9
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q 009331 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207 (537)
Q Consensus 128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 207 (537)
|..|.||||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+.++. ..|..|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHHH
Confidence 44455666666666666666666654443334445556666666666666666666666665543 33566777777777
Q ss_pred hcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHH
Q 009331 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287 (537)
Q Consensus 208 ~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~ 287 (537)
..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|.. ++.+++++|+
T Consensus 84 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 84 SYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HcCcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 7777777777776 455567777788888888888888888888887 578888888888888888666 7778888888
Q ss_pred hcCC
Q 009331 288 EHGV 291 (537)
Q Consensus 288 ~~ga 291 (537)
++|+
T Consensus 161 ~~gA 164 (165)
T 3twr_A 161 GDAA 164 (165)
T ss_dssp TC--
T ss_pred hccc
Confidence 7765
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=7e-26 Score=203.93 Aligned_cols=154 Identities=32% Similarity=0.428 Sum_probs=86.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG 176 (537)
Q Consensus 97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 176 (537)
+.++||.|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|+++|+++ ...|..|.||||.|+..|
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence 34555555555555555555555544332 2455555555555555555555555555554 334555555555555555
Q ss_pred cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331 177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254 (537)
Q Consensus 177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 254 (537)
+.+++++|++++++.. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++
T Consensus 92 ~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 5555555555555533 234556666666666666666666665 344456666666666666666666666666665
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=2.8e-26 Score=208.53 Aligned_cols=162 Identities=23% Similarity=0.324 Sum_probs=91.4
Q ss_pred CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210 (537)
Q Consensus 131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 210 (537)
+.+|||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcC
Confidence 444555555555555555555553333344445555555555555555555555555544332 2455555555555555
Q ss_pred CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290 (537)
Q Consensus 211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g 290 (537)
+.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|++ .|++++..|..|.||+++|...++.+++++|+++|
T Consensus 84 ~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 84 HRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555 344456666666666666666666666666666 46666666666666666666666666666666666
Q ss_pred CCCCC
Q 009331 291 VPCGK 295 (537)
Q Consensus 291 a~~~~ 295 (537)
++...
T Consensus 162 ~~~~~ 166 (179)
T 3f6q_A 162 QNLNR 166 (179)
T ss_dssp CCCSC
T ss_pred cCccc
Confidence 66543
No 70
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.5e-28 Score=249.18 Aligned_cols=223 Identities=22% Similarity=0.223 Sum_probs=164.7
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc-cccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhh--hcCCCCCChH
Q 009331 58 MNQSGETALYVAAEYGYVDMVREMIRYHDTS-LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELL--MTFDSSNTTA 134 (537)
Q Consensus 58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~--~~~d~~g~tp 134 (537)
.+.++.||||+|++.|+.++|++|++.+.+. .....+..|.||||+|+..|+.+++++|++.+++.. ...+.+ .||
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence 3455679999999999999999999987532 112345568899999999999999999999996411 111122 899
Q ss_pred HHHHHhCCCHHHHHHHHHcCCCccc-ccccCCCcHHHHHH-HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331 135 LHTASSQGHVEVVKFLLEKGSTLAT-IARSNGKTALHSAA-RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212 (537)
Q Consensus 135 Lh~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpL~~A~-~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 212 (537)
||+|+..|+.+++++|+++|+++.. ..|.+|.||||+|+ ..|+.+++++|++.+. .|.||||.|+.+|+.
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~ 238 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEK 238 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCH
Confidence 9999999999999999999998643 26788999999999 9999999999998652 378999999999999
Q ss_pred HHHHHHHhcCCcccccccC-------CCCc-------------HHHHHHHh---CcHHHHHHHhhhcCCCc----ccccC
Q 009331 213 ELVDELVKVEPVIINMVDA-------KGNS-------------ALHIATRK---GRVQIVQKLLNINGVDK----AVINK 265 (537)
Q Consensus 213 ~~v~~Ll~~~~~~~n~~d~-------~G~T-------------~Lh~A~~~---~~~~iv~~Ll~~~g~~~----~~~~~ 265 (537)
+++++|++. +..++..|. +|.. .+...... +..+.+++|++..+++. ....+
T Consensus 239 evv~lL~~~-ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n 317 (376)
T 2aja_A 239 YVNPFIARH-VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG 317 (376)
T ss_dssp THHHHHHHH-HHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTT
T ss_pred HHHHHHHhc-CcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCC
Confidence 999999984 333333332 2211 11111122 23556667766332221 12234
Q ss_pred CCCCHHHHHHHcCChhHHHHHHhcC
Q 009331 266 SRETALDTAEKTGHSEIGVILKEHG 290 (537)
Q Consensus 266 ~g~t~L~~A~~~~~~~i~~~L~~~g 290 (537)
.+.|||++|+..|+.+++++|++.|
T Consensus 318 ~~~~~L~~A~~~g~~e~v~lLl~~~ 342 (376)
T 2aja_A 318 DANELLRLALRLGNQGACALLLSIP 342 (376)
T ss_dssp CCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred CccHHHHHHHHcCcHHHHHHHHcCh
Confidence 5678999999999999999999865
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=3.8e-26 Score=207.69 Aligned_cols=169 Identities=21% Similarity=0.299 Sum_probs=153.1
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331 95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174 (537)
Q Consensus 95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 174 (537)
.++.++||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.|+++ ...+..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 467899999999999999999999987767777999999999999999999999999999987 5678899999999999
Q ss_pred CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254 (537)
Q Consensus 175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 254 (537)
.|+.+++++|++++.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|++
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp TTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654 48999999999999999999999999 567789999999999999999999999999998
Q ss_pred hcCCCcccccCCC
Q 009331 255 INGVDKAVINKSR 267 (537)
Q Consensus 255 ~~g~~~~~~~~~g 267 (537)
.|++++..+..+
T Consensus 160 -~g~~~~~~~~~~ 171 (179)
T 3f6q_A 160 -MGQNLNRIPYKD 171 (179)
T ss_dssp -TTCCCSCBCCCC
T ss_pred -hhcCcccCCccc
Confidence 799998876654
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=7.2e-26 Score=200.24 Aligned_cols=149 Identities=28% Similarity=0.382 Sum_probs=88.0
Q ss_pred hHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCH
Q 009331 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212 (537)
Q Consensus 133 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 212 (537)
||||.|+..|+.+++++|++.|.+.. .+..|.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcChH
Confidence 45555555555555555555555432 34455555555555555555555555555433 2345566666666666666
Q ss_pred HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHH
Q 009331 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 286 (537)
Q Consensus 213 ~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L 286 (537)
+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..|+.+++++|
T Consensus 81 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 66666665 344456666666666666666666666666666 4666666666666666666666666666654
No 73
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.5e-29 Score=239.73 Aligned_cols=201 Identities=20% Similarity=0.158 Sum_probs=132.0
Q ss_pred HHHHHhCCccc-ccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCc
Q 009331 79 REMIRYHDTSL-AGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL 157 (537)
Q Consensus 79 ~~Ll~~~~~~~-~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~ 157 (537)
+.|++.+.... .+..+.+|.||||.|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++.|+++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 44555543322 223445566677777777777777777777665543 3667777777777777777777777777766
Q ss_pred ccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHH--HhcCCHHHHHHHHhcCCcccccccCCCCc
Q 009331 158 ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA--VKGQSIELVDELVKVEPVIINMVDAKGNS 235 (537)
Q Consensus 158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T 235 (537)
+..|..|.||||+|+..|+.+++++|++.++++....+..|.||||+| +..|+.+++++|++ .+.+++.+|..|.|
T Consensus 81 -n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~ 158 (229)
T 2vge_A 81 -NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD-VEQSMGLMNSGAVY 158 (229)
T ss_dssp -TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH-HHHHTTTSGGGEEE
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHH-cCCCcccccCCchH
Confidence 455667777777777777777777777777776555445777777777 77777777777777 34556777777777
Q ss_pred HHHHHHHhCcHHHHHHHhhhcCCC--cccccCCCCCHHHHHHHcCChhHHHHH
Q 009331 236 ALHIATRKGRVQIVQKLLNINGVD--KAVINKSRETALDTAEKTGHSEIGVIL 286 (537)
Q Consensus 236 ~Lh~A~~~~~~~iv~~Ll~~~g~~--~~~~~~~g~t~L~~A~~~~~~~i~~~L 286 (537)
|+|.++..+.. ++|++ .|++ ++.+|..|.|||++|+..|+.++++.+
T Consensus 159 ~l~~~~~~~~~---~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 159 ALWDYSAEFGD---ELSFR-EGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp ESSCBCCSSTT---BCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred HHHHHhhcccc---ccCcc-ccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 77755544332 35555 4666 566777788888888888877776543
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1e-28 Score=234.11 Aligned_cols=204 Identities=18% Similarity=0.152 Sum_probs=166.0
Q ss_pred HHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHH
Q 009331 39 VLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118 (537)
Q Consensus 39 v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~ 118 (537)
++.|++++.+++. .+..+..|.||||.|+..|+.++|++|++.+. +.+..|..|.||||+|+..|+.+++++|++
T Consensus 1 v~~ll~~~~~~~~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 75 (229)
T 2vge_A 1 MRSVLRKAGSPRK---ARRARLNPLVLLLDAALTGELEVVQQAVKEMN--DPSQPNEEGITALHNAICGANYSIVDFLIT 75 (229)
T ss_dssp ---------CCCC---CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CeehhccCCCCcc---ccccccchhHHHHHHHHcCCHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4677888776532 24556677899999999999999999999874 556789999999999999999999999999
Q ss_pred hCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHH--HHCCcHHHHHHHHhcCCCCcccCC
Q 009331 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA--ARNGHLEIVKALLSKEPGIVLRND 196 (537)
Q Consensus 119 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~~~~~~~~~d 196 (537)
.+.++... |..|.||||+|+..|+.+++++|++.|+++....+.+|.||||+| +..|+.+++++|++.+++.... |
T Consensus 76 ~ga~~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~-~ 153 (229)
T 2vge_A 76 AGANVNSP-DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-N 153 (229)
T ss_dssp TTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS-G
T ss_pred CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc-c
Confidence 99887654 889999999999999999999999999998554457999999999 9999999999999999886544 7
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHhcCCcc--cccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331 197 KKGQTALHMAVKGQSIELVDELVKVEPVI--INMVDAKGNSALHIATRKGRVQIVQKLL 253 (537)
Q Consensus 197 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~--~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll 253 (537)
..|.++++.++..+.. +.|++. +.. ++.+|.+|+||||+|+..|+.++++.++
T Consensus 154 ~~~~~~l~~~~~~~~~---~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 154 SGAVYALWDYSAEFGD---ELSFRE-GESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp GGEEEESSCBCCSSTT---BCCBCT-TCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred CCchHHHHHHhhcccc---ccCccc-cccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 8889999976665543 455653 444 7889999999999999999999987654
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=9e-26 Score=199.62 Aligned_cols=149 Identities=28% Similarity=0.337 Sum_probs=87.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331 99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178 (537)
Q Consensus 99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 178 (537)
++||.|+..|+.+++++|++.+++.. .|..|.||||+|+..|+.+++++|++.|.++ ...+..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChH
Confidence 45555555555555555555554432 2455555555555555555666655555554 34455556666666666666
Q ss_pred HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHH
Q 009331 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKL 252 (537)
Q Consensus 179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~L 252 (537)
+++++|+++++++.. .|..|.||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 666666665555432 35556666666666666666666666 3445566666666666666666666666654
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=1.1e-25 Score=199.49 Aligned_cols=151 Identities=24% Similarity=0.351 Sum_probs=82.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcH
Q 009331 99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178 (537)
Q Consensus 99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 178 (537)
||||.|+..|+.+++++|++..+......|..|.||||+ +..|+.+++++|+++|+++ ...|..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence 455555555555555555555222223335555555555 5555555555555555554 33455555555555555555
Q ss_pred HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254 (537)
Q Consensus 179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 254 (537)
+++++|++++.++.. .|..|.||||+|+..|+.+++++|++. .+++.+|.+|+||||+|+..|+.+++++|++
T Consensus 82 ~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 82 DTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCC-cCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 555555555544332 245555666666666666666665553 4455556666666666666666666666554
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=3.4e-26 Score=204.95 Aligned_cols=157 Identities=24% Similarity=0.307 Sum_probs=96.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Q 009331 94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA 173 (537)
Q Consensus 94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 173 (537)
+.+|.|+||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|.++ ...|.+|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence 3445566666666666666666665544444444555666666666666666666666666655 445556666666666
Q ss_pred HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331 174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253 (537)
Q Consensus 174 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll 253 (537)
..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+. ++.+++++|+
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HcCcHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 66666666666666655433 35666666666666666666666666 345566667777777777555 6667777666
Q ss_pred h
Q 009331 254 N 254 (537)
Q Consensus 254 ~ 254 (537)
+
T Consensus 161 ~ 161 (165)
T 3twr_A 161 G 161 (165)
T ss_dssp T
T ss_pred h
Confidence 5
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=3.4e-25 Score=196.41 Aligned_cols=154 Identities=25% Similarity=0.302 Sum_probs=141.3
Q ss_pred CChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcC
Q 009331 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210 (537)
Q Consensus 131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 210 (537)
+.||||.|+..|+.+++++|++.........+..|.||||+ +..|+.+++++|++.+.++. ..|..|.||||.|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcC
Confidence 46899999999999999999999332336778899999999 99999999999999998865 45889999999999999
Q ss_pred CHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhc
Q 009331 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 289 (537)
Q Consensus 211 ~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ 289 (537)
+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++. ++++..|..|.|||++|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999 5677899999999999999999999999999994 89999999999999999999999999999874
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=9.4e-26 Score=215.17 Aligned_cols=179 Identities=20% Similarity=0.218 Sum_probs=78.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHh
Q 009331 61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140 (537)
Q Consensus 61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 140 (537)
.|.||||.|++.|+.+.++.|++.+.+... +..|.||||.|+..|+.+++++|++.++++.. .|..|.||||+|+.
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHH
Confidence 355555555555555555555555432221 23455555555555555555555555554332 25555555555555
Q ss_pred CCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHH--HhcCCHHHHHHH
Q 009331 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA--VKGQSIELVDEL 218 (537)
Q Consensus 141 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~L 218 (537)
.|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|+++++++....+..+.||||+| +..|+.+++++|
T Consensus 80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 55555555555555554 344555555555555555555555555555554433222223555555 455555555555
Q ss_pred HhcCCcccc---------cccCCCCcHHHHHHHhCc
Q 009331 219 VKVEPVIIN---------MVDAKGNSALHIATRKGR 245 (537)
Q Consensus 219 l~~~~~~~n---------~~d~~G~T~Lh~A~~~~~ 245 (537)
++. +..++ ..|..+.++++++...|.
T Consensus 159 l~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 159 YGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 552 22122 235567777777766665
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=1.1e-25 Score=214.73 Aligned_cols=179 Identities=18% Similarity=0.191 Sum_probs=117.7
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Q 009331 95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174 (537)
Q Consensus 95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 174 (537)
..|.||||.|+..|+.++++.|++++.++.. +..|.||||.|+..|+.+++++|++.|+++ +..|.+|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 4588999999999999999999988877653 467889999999999999999999888876 5678888999999999
Q ss_pred CCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC-cHHHHH--HHhCcHHHHHH
Q 009331 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN-SALHIA--TRKGRVQIVQK 251 (537)
Q Consensus 175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~-T~Lh~A--~~~~~~~iv~~ 251 (537)
.|+.+++++|++++.++. ..|..|+||||+|+..|+.+++++|++ .+.+++.+|..|. ||||+| +..|+.+++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 999999999998888764 447888999999999999999999998 4666788887776 999988 77788899998
Q ss_pred HhhhcCCCcccc---------cCCCCCHHHHHHHcCC
Q 009331 252 LLNINGVDKAVI---------NKSRETALDTAEKTGH 279 (537)
Q Consensus 252 Ll~~~g~~~~~~---------~~~g~t~L~~A~~~~~ 279 (537)
|++ .|++++.. +..+.++++++...|.
T Consensus 158 Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 158 LYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHH-hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 887 56676655 4456677776665554
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=2.3e-23 Score=184.76 Aligned_cols=142 Identities=21% Similarity=0.237 Sum_probs=102.6
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCCh-HHHHH
Q 009331 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQT-ALHMA 206 (537)
Q Consensus 128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~Lh~A 206 (537)
+..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+ .|+.+++++|++.+.++.. .|..|.| |||+|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-~d~~g~ttpL~~A 85 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPATLTRPVHDA 85 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTTTCCCHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHH
Confidence 567788888888888888888888888776 556778888888874 7888888888888777543 4778888 99999
Q ss_pred HhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHH
Q 009331 207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTA 274 (537)
Q Consensus 207 ~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A 274 (537)
+..|+.+++++|++. +.+++.+|.+|+||||+|+..|+.+++++|++ .|++++..|..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred HHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence 998999999988884 66788889999999999999999999999998 7899999999998887643
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=1e-23 Score=192.66 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=16.0
Q ss_pred HHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHH
Q 009331 248 IVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287 (537)
Q Consensus 248 iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~ 287 (537)
++++|++..|++++.+|..|.||||+|...++.+++++|.
T Consensus 135 iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~ 174 (186)
T 3t8k_A 135 LYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174 (186)
T ss_dssp HHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3333333233444444444444444444444444443333
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=3.3e-23 Score=189.34 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=136.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCH----HHHHHHHHcCCCcccccccCCCcHHHHH
Q 009331 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV----EVVKFLLEKGSTLATIARSNGKTALHSA 172 (537)
Q Consensus 97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 172 (537)
++++|+.|++.|+.+.++.+++.+..... +..|+||||+|+..|+. +++++|+++|+++ +..|.+|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~--~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE--SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCHH--HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccccc--ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 56899999999999999999998765332 36799999999999975 5999999999998 67789999999999
Q ss_pred HHCCc------HHHHHHHHhcCCCCcccCCCCCC-hHHHHHHhcC-----CHHHHHHHHhcCCcccccccCCCCcHHHHH
Q 009331 173 ARNGH------LEIVKALLSKEPGIVLRNDKKGQ-TALHMAVKGQ-----SIELVDELVKVEPVIINMVDAKGNSALHIA 240 (537)
Q Consensus 173 ~~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~-----~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A 240 (537)
+..|+ .+++++|+++|.++.. .|..|. ||||+|+..+ ..+++++|++..+.+++.+|..|+||||+|
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~-~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITA-LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSS-CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCc-cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence 99886 6889999999999765 488999 9999999954 356999999866788999999999999999
Q ss_pred HHhCcHHHHHHHhhh
Q 009331 241 TRKGRVQIVQKLLNI 255 (537)
Q Consensus 241 ~~~~~~~iv~~Ll~~ 255 (537)
+..++.+++++|.+.
T Consensus 162 ~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 162 KRCQKPIALKMMEDY 176 (186)
T ss_dssp HTTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 999999999999873
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=7.2e-23 Score=177.12 Aligned_cols=128 Identities=21% Similarity=0.265 Sum_probs=77.9
Q ss_pred ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCC-CCcHHH
Q 009331 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK-GNSALH 238 (537)
Q Consensus 160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~-G~T~Lh 238 (537)
..+..|.||||.|+..|+.+++++|++.+.++. ..|..|+||||+|+. |+.+++++|++ .+.+++.+|.. |+||||
T Consensus 7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~ 83 (136)
T 1d9s_A 7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLTRPVH 83 (136)
T ss_dssp CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTBCHHH
T ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCCCHHH
Confidence 344555555555555555555555555555433 234556666666666 66666666665 34445666666 666666
Q ss_pred HHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCC
Q 009331 239 IATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 291 (537)
Q Consensus 239 ~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga 291 (537)
+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|+
T Consensus 84 ~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 84 DAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 6666666666666666 566666666666666666666666666666666665
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=1.3e-22 Score=175.58 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=79.3
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCC-CChHHHHH
Q 009331 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK-GQTALHMA 206 (537)
Q Consensus 128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-g~t~Lh~A 206 (537)
|..|.||||+|+..|+.+++++|+++|.++ ...|..|.||||+|+. |+.+++++|+++++++... |.. |.||||+|
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A 85 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-DPATLTRPVHDA 85 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-BTTTTBCHHHHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-CCCCCCCHHHHH
Confidence 555666666666666666666666665554 3445556666666666 6666666666665554332 445 66666666
Q ss_pred HhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331 207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258 (537)
Q Consensus 207 ~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~ 258 (537)
+..|+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|++ .|+
T Consensus 86 ~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Ga 135 (136)
T 1d9s_A 86 AREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA-ATG 135 (136)
T ss_dssp HHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHC
T ss_pred HHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCC
Confidence 66666677776666 345566777777777777777777777777776 344
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.87 E-value=1.2e-22 Score=180.16 Aligned_cols=140 Identities=20% Similarity=0.192 Sum_probs=77.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCc-HHHHH
Q 009331 94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKT-ALHSA 172 (537)
Q Consensus 94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL~~A 172 (537)
+..|.||||.|+..|+.+++++|++.+.++... |..|.||||+|+ .|+.+++++|+++|+++ ...|..|.| |||+|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA 85 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 445566666666666666666666665554332 556666666653 66666666666666655 445566666 66666
Q ss_pred HHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHH
Q 009331 173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH 238 (537)
Q Consensus 173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh 238 (537)
+..|+.+++++|++++.++.. .|..|.||||+|+..|+.+++++|++ .+.+++.+|..|.||.+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSS-CC---------------
T ss_pred HHCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccc
Confidence 666666666666666665433 35666677777776667777766666 45556666666666655
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.1e-21 Score=166.64 Aligned_cols=125 Identities=39% Similarity=0.615 Sum_probs=78.4
Q ss_pred CCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG 244 (537)
Q Consensus 165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~ 244 (537)
|.||||.|+..|+.+++++|++.+++... .|..|.||||.|+..++.+++++|++ .+..++.+|..|+||||+|+..+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcC
Confidence 55555555555555555555555554332 34556666666666666666666666 34445666666666666666666
Q ss_pred cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331 245 RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 292 (537)
Q Consensus 245 ~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~ 292 (537)
+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 6666666666 4666666666666777777666666677766666653
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=2.2e-21 Score=164.61 Aligned_cols=125 Identities=42% Similarity=0.644 Sum_probs=81.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHh
Q 009331 61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140 (537)
Q Consensus 61 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 140 (537)
+|.||||.|+..|+.+++++|++.+. +.+..+..|.||||.|+..|+.+++++|++.+.++... |..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCC--CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCcHHHHHHH
Confidence 36677777777777777777776652 33445666667777777777777777777666654433 5666677777777
Q ss_pred CCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCC
Q 009331 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP 189 (537)
Q Consensus 141 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 189 (537)
.|+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++++
T Consensus 78 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred cChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 77777777777766665 4456666677777776677777776666654
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=8.8e-22 Score=170.24 Aligned_cols=123 Identities=30% Similarity=0.417 Sum_probs=73.5
Q ss_pred CCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG 244 (537)
Q Consensus 165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~ 244 (537)
+.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..+
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcC
Confidence 4555555555555555555555555433 234556666666666666666666665 34445666666666666666666
Q ss_pred cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331 245 RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290 (537)
Q Consensus 245 ~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g 290 (537)
+.+++++|++ .|++++..|..|.|||++|+..++.+++++|+++|
T Consensus 92 ~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 6666666666 46666666666666666666666666666666554
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=1.3e-21 Score=169.21 Aligned_cols=126 Identities=25% Similarity=0.352 Sum_probs=90.9
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138 (537)
Q Consensus 59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A 138 (537)
...+.||||.|+..|+.+++++|++.+ .+.+..|..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHH
Confidence 345677788888888888888777765 334556677777777777777777777777777665433 66777777777
Q ss_pred HhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcC
Q 009331 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE 188 (537)
Q Consensus 139 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 188 (537)
+..|+.+++++|+++|+++ ...|.+|.||||+|+..|+.+++++|++.|
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 7777777777777777776 456677777777777777777777777653
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=9.5e-22 Score=170.19 Aligned_cols=128 Identities=24% Similarity=0.370 Sum_probs=84.7
Q ss_pred ccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHH
Q 009331 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHI 239 (537)
Q Consensus 160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~ 239 (537)
..|.+|.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHH
Confidence 345566666666666666666666666665543 335666777777777777777777776 455567777777777777
Q ss_pred HHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcC
Q 009331 240 ATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 290 (537)
Q Consensus 240 A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~g 290 (537)
|+..++.+++++|++ .|++++.+|..|.||+++|...+..+++++|.+.+
T Consensus 83 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 777777777777776 57777777777777777777666666666655543
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=2.1e-21 Score=176.90 Aligned_cols=140 Identities=21% Similarity=0.188 Sum_probs=100.6
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHH
Q 009331 59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138 (537)
Q Consensus 59 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A 138 (537)
+..|.||||.|+..|+.++++.|++ + .+.+..+..|.||||+|+..|+.+++++|++.++++....+..|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 4567788888888888888888887 4 345566777888888888888888888888877776655336777888888
Q ss_pred HhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHH
Q 009331 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218 (537)
Q Consensus 139 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 218 (537)
+..|+.+++++|+++|+++ ...|.+|.||||+|+..++. ..+.++|+.|+..|..+++++|
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence 8888888888888877776 45677777777777753221 3345677777777766766666
Q ss_pred Hh
Q 009331 219 VK 220 (537)
Q Consensus 219 l~ 220 (537)
.+
T Consensus 179 ~~ 180 (183)
T 3deo_A 179 EG 180 (183)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=2.6e-21 Score=176.39 Aligned_cols=140 Identities=26% Similarity=0.289 Sum_probs=88.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Q 009331 94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA 173 (537)
Q Consensus 94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 173 (537)
+..|.||||.|+..|+.++++.|++ +.++. ..|..|+||||+|+..|+.+++++|+++|+++....+.+|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 3456677777777777777777776 44433 346667777777777777777777777776663333366677777777
Q ss_pred HCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHh
Q 009331 174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLL 253 (537)
Q Consensus 174 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll 253 (537)
..|+.+++++|+++++++. ..|..|.||||+|++.++. ..+.++|++|+..|..+++++|.
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHH
Confidence 7777777777777666643 3366666777666653211 23456666666666666666665
Q ss_pred h
Q 009331 254 N 254 (537)
Q Consensus 254 ~ 254 (537)
+
T Consensus 180 ~ 180 (183)
T 3deo_A 180 G 180 (183)
T ss_dssp T
T ss_pred H
Confidence 4
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=2.5e-21 Score=185.09 Aligned_cols=137 Identities=26% Similarity=0.294 Sum_probs=66.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCC
Q 009331 97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG 176 (537)
Q Consensus 97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 176 (537)
|.||||.|+..|+.++++.|++ +.++. ..|..|+||||+|+..|+.+++++|+++|+++....+..|.||||+|+..|
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence 4444444444444444444444 33222 224444555555555555555555555544442222244555555555555
Q ss_pred cHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331 177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254 (537)
Q Consensus 177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 254 (537)
+.+++++|+++++++. ..|..|.||||+|+..++. ..+.||||+|+..|+.+++++|++
T Consensus 123 ~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~~------------------~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 123 RPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp CHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHTT------------------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHhc------------------cCCCCHHHHHHHcChHHHHHHHHH
Confidence 5555555555544432 2244555555555432221 235566666666666666666665
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=1e-20 Score=180.75 Aligned_cols=144 Identities=25% Similarity=0.276 Sum_probs=128.5
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q 009331 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207 (537)
Q Consensus 128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 207 (537)
+..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..|+.+++++|+++++++....+..|.||||+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 3468999999999999999999999 8776 6688999999999999999999999999999987665588999999999
Q ss_pred hcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHH
Q 009331 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 287 (537)
Q Consensus 208 ~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~ 287 (537)
..|+.+++++|++ .+.+++.+|..|+||||+|+..++ +..+.|||++|+..|+.+++++|.
T Consensus 120 ~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 120 GYVRPEVVEALVE-LGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence 9999999999999 477899999999999999986221 256789999999999999999999
Q ss_pred hcCCC
Q 009331 288 EHGVP 292 (537)
Q Consensus 288 ~~ga~ 292 (537)
+++.+
T Consensus 181 ~~~~~ 185 (244)
T 3ui2_A 181 GQVFE 185 (244)
T ss_dssp HHHEE
T ss_pred Hhccc
Confidence 87543
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=4e-21 Score=166.25 Aligned_cols=125 Identities=24% Similarity=0.351 Sum_probs=70.7
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHH
Q 009331 58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHT 137 (537)
Q Consensus 58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~ 137 (537)
+|..|.||||+|+..|+.+++++|++.+ .+.+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~ 82 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQNDSPLHD 82 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCGGGCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-cCCCCCCHHHH
Confidence 3555666666666666666666666654 23344555566666666666666666666665554433 25555666666
Q ss_pred HHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHh
Q 009331 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186 (537)
Q Consensus 138 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 186 (537)
|+..|+.+++++|+++|+++ ...|.+|.||||+|+..+..+++++|.+
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 66666666666666665554 4455556666666655555555544443
No 97
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=7.1e-20 Score=178.33 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=139.5
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Q 009331 93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172 (537)
Q Consensus 93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 172 (537)
.|..+.+.++.+...|+..+.+++....+.........+... ......-..+++................++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM----IARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH----HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH----HHHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 456677788888888887666554433222111000011111 1111111222332222111111222335688999
Q ss_pred HHCCcHHHHHHHHhcCCCCccc-----CCCCCChHHHHHHhc---CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhC
Q 009331 173 ARNGHLEIVKALLSKEPGIVLR-----NDKKGQTALHMAVKG---QSIELVDELVKVEPVIINMVDAKGNSALHIATRKG 244 (537)
Q Consensus 173 ~~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~ 244 (537)
+..|+.+.+..+++.+.+.... .|..|.||||+|+.. |+.+++++|++. +.++|.+|.+|+||||+|+..|
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g 216 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTD 216 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTT
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcC
Confidence 9999999999999988875433 377899999999998 899999999994 6778999999999999999999
Q ss_pred cHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331 245 RVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 293 (537)
Q Consensus 245 ~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~ 293 (537)
+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+..
T Consensus 217 ~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 217 NAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999998 79999999999999999999999999999999998863
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=181.45 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=117.4
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHcCCCcccc-----cccCCCcHHHHHHHC---CcHHHHHHHHhcCCCCcccCCCCCC
Q 009331 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATI-----ARSNGKTALHSAARN---GHLEIVKALLSKEPGIVLRNDKKGQ 200 (537)
Q Consensus 129 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~ 200 (537)
....++|+.|+..|+.+.++.|++.|+++... .+..|.||||+|+.. |+.+++++|+++++++.. .|..|+
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~-~d~~G~ 227 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-KAADGN 227 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC-CCTTCC
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC-CCCCCC
Confidence 34557899999999999999999999887543 578899999999987 899999999999988654 478999
Q ss_pred hHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCCh
Q 009331 201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHS 280 (537)
Q Consensus 201 t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~ 280 (537)
||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|++ .|++ .|.||||+|+..|+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC--------
T ss_pred CHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCCc
Confidence 99999999999999999999 577789999999999999999999999999998 4554 578999999988764
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=178.70 Aligned_cols=125 Identities=27% Similarity=0.284 Sum_probs=77.9
Q ss_pred CcHHHHHHHCCcHHHHHHHHhcCCCCccc-----CCCCCChHHHHHHhc---CCHHHHHHHHhcCCcccccccCCCCcHH
Q 009331 166 KTALHSAARNGHLEIVKALLSKEPGIVLR-----NDKKGQTALHMAVKG---QSIELVDELVKVEPVIINMVDAKGNSAL 237 (537)
Q Consensus 166 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~n~~d~~G~T~L 237 (537)
.++|+.|+..|+.+.++.|++.++++... .+..|.||||+|+.. ++.+++++|++. +.++|.+|.+|+|||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTAL 230 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHH
Confidence 34566666666666666666666654432 355666666666664 566666666663 445566666666666
Q ss_pred HHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCC
Q 009331 238 HIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 292 (537)
Q Consensus 238 h~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~ 292 (537)
|+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++|++
T Consensus 231 h~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp HHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 66666666666666666 4666666666666666666666666666666666654
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=1.3e-19 Score=153.57 Aligned_cols=109 Identities=28% Similarity=0.344 Sum_probs=72.0
Q ss_pred cCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHH
Q 009331 163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR 242 (537)
Q Consensus 163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~ 242 (537)
..|.||||.|+..|+.+++++|++.++++. ..|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHH
Confidence 345566666666666666666666665543 335666666666666666666666666 345566677777777777777
Q ss_pred hCcHHHHHHHhhhcCCCcccccCCCCCHHHHH
Q 009331 243 KGRVQIVQKLLNINGVDKAVINKSRETALDTA 274 (537)
Q Consensus 243 ~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A 274 (537)
.++.+++++|++ .|++++.+|..|.||+++|
T Consensus 83 ~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 83 EGHVSCVKLLLS-KGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHC
T ss_pred cCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHh
Confidence 777777777776 4777777777777777776
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=5.3e-20 Score=156.00 Aligned_cols=113 Identities=27% Similarity=0.274 Sum_probs=77.5
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q 009331 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207 (537)
Q Consensus 128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 207 (537)
+..|.||||+|+..|+.+++++|++.+.++ ...|..|.||||+|+..|+.+++++|++.++++. ..|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHH
Confidence 345667777777777777777777777665 4556667777777777777777777777766643 34667777777777
Q ss_pred hcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHh
Q 009331 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243 (537)
Q Consensus 208 ~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~ 243 (537)
..|+.+++++|++. +.+++.+|.+|+||||+|...
T Consensus 82 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 82 YEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCCH
T ss_pred HcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhCCH
Confidence 77777777777773 555677777777777777433
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.81 E-value=2.4e-20 Score=175.43 Aligned_cols=130 Identities=28% Similarity=0.355 Sum_probs=87.6
Q ss_pred ccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHH
Q 009331 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIAT 241 (537)
Q Consensus 162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~ 241 (537)
+.+|.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 4456667777777777777777776666543 336667777777777777777777777546667777777777777777
Q ss_pred HhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCC
Q 009331 242 RKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 293 (537)
Q Consensus 242 ~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~ 293 (537)
..|+.+++++|++ .|++++.+|..|.|||++|+..++.++++.|++.|+..
T Consensus 149 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 149 WKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp HHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred HcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 7777777777777 47777777777778888777777777777777776653
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.81 E-value=2.2e-20 Score=175.58 Aligned_cols=136 Identities=22% Similarity=0.284 Sum_probs=88.7
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhc-CCCCcccCCCCCChHHHHH
Q 009331 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK-EPGIVLRNDKKGQTALHMA 206 (537)
Q Consensus 128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A 206 (537)
+..|.||||+|+..|+.+++++|++.|.++ ...|..|.||||+|+..|+.+++++|++. +.++ ...|..|.||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHH
Confidence 455667777777777777777777777665 45566777777777777777777777776 4443 34467788888888
Q ss_pred HhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCC
Q 009331 207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSR 267 (537)
Q Consensus 207 ~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g 267 (537)
+..|+.+++++|++. +.+++.+|.+|+||||+|+..++.++++.|++ .+++.+..|.++
T Consensus 148 ~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~ 206 (222)
T 3ehr_A 148 AWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED 206 (222)
T ss_dssp HHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence 888888888888874 56678888888888888888888888888877 566666655543
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=6.3e-19 Score=171.60 Aligned_cols=193 Identities=19% Similarity=0.173 Sum_probs=139.6
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHH
Q 009331 58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHT 137 (537)
Q Consensus 58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~ 137 (537)
.|..+.+.|+.+...|+....+++............+ .+....+ ....-..+++...........+....++|+.
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~-~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~ 136 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPN-PGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCE 136 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCC-TTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCC-CCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence 4677889999999999987776654332111110111 1111111 1111112233322222111111223478999
Q ss_pred HHhCCCHHHHHHHHHcCCCccc-----ccccCCCcHHHHHHHC---CcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhc
Q 009331 138 ASSQGHVEVVKFLLEKGSTLAT-----IARSNGKTALHSAARN---GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG 209 (537)
Q Consensus 138 A~~~g~~~iv~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 209 (537)
|+..|+.+.++.+++.|.++.. ..+..|.||||+|+.. |+.+++++|+++++++.. .|..|.||||+|+..
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~-~d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCLT 215 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHHHHHHHT
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc-cCCCCCCHHHHHHHc
Confidence 9999999999999999988632 3377899999999998 899999999999988654 488999999999999
Q ss_pred CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCC
Q 009331 210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGV 258 (537)
Q Consensus 210 ~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~ 258 (537)
|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++. |+
T Consensus 216 g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga 262 (278)
T 1dcq_A 216 DNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQA-LS 262 (278)
T ss_dssp TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HT
T ss_pred CCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence 99999999999 6778999999999999999999999999999984 44
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.77 E-value=2.3e-18 Score=138.12 Aligned_cols=93 Identities=33% Similarity=0.548 Sum_probs=73.5
Q ss_pred CCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHc
Q 009331 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKT 277 (537)
Q Consensus 198 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~ 277 (537)
+|+||||+|+..|+.+++++|++ .+.++|.+|.+|+||||+|+..++.+++++|++ .|++++.+|..|.|||++|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence 36788888888888888888887 456677888888888888888888888888887 6788888888888888888888
Q ss_pred CChhHHHHHHhcCCC
Q 009331 278 GHSEIGVILKEHGVP 292 (537)
Q Consensus 278 ~~~~i~~~L~~~ga~ 292 (537)
++.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 888888888888763
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.75 E-value=3.2e-18 Score=172.60 Aligned_cols=145 Identities=21% Similarity=0.200 Sum_probs=89.7
Q ss_pred CCChHHHHHHhC-CCHHHHHHHHHcCCCcccccc--cCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHH
Q 009331 130 SNTTALHTASSQ-GHVEVVKFLLEKGSTLATIAR--SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 206 (537)
Q Consensus 130 ~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A 206 (537)
.+.||||.|+.. |+.++++.|+++|++++ ..+ ..|.||||+|+..|+.+++++|++++.++. ..|..|.||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHH
Confidence 445677777777 77777777777777763 344 667777777777777777777777777654 3467777777777
Q ss_pred HhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhc--CCCcccccCCCCCHHHHHHHc
Q 009331 207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNIN--GVDKAVINKSRETALDTAEKT 277 (537)
Q Consensus 207 ~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~--g~~~~~~~~~g~t~L~~A~~~ 277 (537)
+..|+.+++++|++ .+.+++.+|.+|+||||+|+..++.+++++|+... +.+....+..+.|+++++...
T Consensus 276 ~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 276 TILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 77777777777777 45666777777777777777777777777777532 122334455566666665543
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.75 E-value=4.8e-18 Score=171.33 Aligned_cols=147 Identities=19% Similarity=0.229 Sum_probs=83.7
Q ss_pred CCCCChHHHHHHHc-CCHHHHHHHHHhCChhhhcCC--CCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHH
Q 009331 94 ARNGYDAFHIAAKQ-GCLEVLKILMEALPELLMTFD--SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH 170 (537)
Q Consensus 94 ~~~g~t~Lh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 170 (537)
+..+.|+||.|+.. |+.++++.|++.+.++... + ..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 33455677777766 7777777777766665443 3 56677777777777777777777777665 455666777777
Q ss_pred HHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCC--cccccccCCCCcHHHHHHHh
Q 009331 171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP--VIINMVDAKGNSALHIATRK 243 (537)
Q Consensus 171 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~--~~~n~~d~~G~T~Lh~A~~~ 243 (537)
+|+..|+.+++++|+++++++. ..|..|.||||+|+..++.+++++|+.... ......+..+.|+++++...
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 7777777777777777766653 336667777777777777777777765432 22233445566777766543
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.74 E-value=8.7e-18 Score=134.72 Aligned_cols=91 Identities=40% Similarity=0.615 Sum_probs=48.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhC
Q 009331 62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ 141 (537)
Q Consensus 62 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 141 (537)
|.||||+|+..|+.+++++|++.+ .+.+.+|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARN 78 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHc
Confidence 455555555555555555555544 223344555555555555555555555555555544322 45555555555555
Q ss_pred CCHHHHHHHHHcCC
Q 009331 142 GHVEVVKFLLEKGS 155 (537)
Q Consensus 142 g~~~iv~~Ll~~~~ 155 (537)
|+.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 55555555555543
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=7.5e-18 Score=177.88 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=101.7
Q ss_pred CChHHHHHHhCCCHHHHHHHHHcCCCcccc-----cccCCCcHHHHHHH---CCcHHHHHHHHhcCCCCcccCCCCCChH
Q 009331 131 NTTALHTASSQGHVEVVKFLLEKGSTLATI-----ARSNGKTALHSAAR---NGHLEIVKALLSKEPGIVLRNDKKGQTA 202 (537)
Q Consensus 131 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~---~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 202 (537)
..+.||.|+..|+.+.++.|++.|++++.. .+..|.||||+|+. .|+.+++++|+++++++.. .|..|+||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~-~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-KAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTC-CCSSSCCH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCc-cCCCCCcH
Confidence 346788888888888888888888876322 26678888888865 8888888888888887654 47888888
Q ss_pred HHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccc
Q 009331 203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVI 263 (537)
Q Consensus 203 Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~ 263 (537)
||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .|++++..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~ 269 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQ-AQAGTFAF 269 (497)
T ss_dssp HHHHTTTTCHHHHHHHHH-TCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHH-TCC-----
T ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hCCCCCCC
Confidence 888888888888888888 567788888888888888888888888888888 68777764
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.3e-17 Score=176.16 Aligned_cols=128 Identities=27% Similarity=0.275 Sum_probs=115.8
Q ss_pred CcHHHHHHHCCcHHHHHHHHhcCCCCccc-----CCCCCChHHHHHHh---cCCHHHHHHHHhcCCcccccccCCCCcHH
Q 009331 166 KTALHSAARNGHLEIVKALLSKEPGIVLR-----NDKKGQTALHMAVK---GQSIELVDELVKVEPVIINMVDAKGNSAL 237 (537)
Q Consensus 166 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~---~~~~~~v~~Ll~~~~~~~n~~d~~G~T~L 237 (537)
.+.||.|+..|+.+.++.|++.++++... .|..|.||||+|+. .|+.+++++|++ .+.++|.+|.+|+|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCccCCCCCcHH
Confidence 36799999999999999999999886543 37789999999966 999999999999 5678999999999999
Q ss_pred HHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHHHHHHcCChhHHHHHHhcCCCCCC
Q 009331 238 HIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK 295 (537)
Q Consensus 238 h~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~~A~~~~~~~i~~~L~~~ga~~~~ 295 (537)
|+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++...
T Consensus 212 h~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HHHTTTTCHHHHHHHHH-TCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 99999999999999999 7999999999999999999999999999999999998654
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.72 E-value=9.3e-18 Score=140.17 Aligned_cols=107 Identities=35% Similarity=0.481 Sum_probs=75.8
Q ss_pred cccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHH
Q 009331 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240 (537)
Q Consensus 161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A 240 (537)
.|.+|.||||.|+..|+.+++++|++.++++. ..|..|.||||+|+..++.+++++|++ .+.+++.+|..|+||||+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHH
Confidence 45667777777777777777777777766643 336677777777777777777777777 3555677777788888888
Q ss_pred HHhCcHHHHHHHhhhcCCCcccccCCCCCH
Q 009331 241 TRKGRVQIVQKLLNINGVDKAVINKSRETA 270 (537)
Q Consensus 241 ~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~ 270 (537)
+..++.+++++|++ .|++++..+..|.+|
T Consensus 83 ~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDA-KGADVNARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHT-TSSSHHHHSCCCC--
T ss_pred HHCCCHHHHHHHHH-cCCCCCcCCcccccc
Confidence 88888888887777 677877777777765
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.69 E-value=3.8e-17 Score=136.46 Aligned_cols=106 Identities=37% Similarity=0.477 Sum_probs=62.7
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q 009331 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207 (537)
Q Consensus 128 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 207 (537)
|.+|.||||+|+..|+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|++.+++.. ..|..|.||||+|+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLAK 83 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHH
Confidence 555666666666666666666666666554 3445556666666666666666666666655543 23556666666666
Q ss_pred hcCCHHHHHHHHhcCCcccccccCCCCcH
Q 009331 208 KGQSIELVDELVKVEPVIINMVDAKGNSA 236 (537)
Q Consensus 208 ~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~ 236 (537)
..++.+++++|++ .+.++|.++..|.||
T Consensus 84 ~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 84 KNGHHEIVKLLDA-KGADVNARSWGSSHH 111 (115)
T ss_dssp TTTCHHHHHHHHT-TSSSHHHHSCCCC--
T ss_pred HCCCHHHHHHHHH-cCCCCCcCCcccccc
Confidence 6666666666665 445566666666655
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.61 E-value=1.3e-15 Score=126.04 Aligned_cols=92 Identities=25% Similarity=0.347 Sum_probs=70.2
Q ss_pred ccCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhhhcCCCcccccCCCCCHHH
Q 009331 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALD 272 (537)
Q Consensus 193 ~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~~~~g~t~L~ 272 (537)
...|.+|.|+||.|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||+
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcHHH
Confidence 3446777788888888888888888887 456677788888888888888888888888887 57888888888888888
Q ss_pred HHHHcCChhHHHHH
Q 009331 273 TAEKTGHSEIGVIL 286 (537)
Q Consensus 273 ~A~~~~~~~i~~~L 286 (537)
+|+..++.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 88888888887765
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.59 E-value=3.6e-15 Score=123.39 Aligned_cols=93 Identities=30% Similarity=0.380 Sum_probs=59.7
Q ss_pred HHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChHHHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChH
Q 009331 55 LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTA 134 (537)
Q Consensus 55 l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp 134 (537)
....+.+|.||||+|+..|+.+++++|++.+ .+.+..|..|.||||+|+..|+.+++++|++.+.++.. .|..|.||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tp 93 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTA 93 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCcH
Confidence 4455667777777777777777777777765 33445566677777777777777777777777665443 36667777
Q ss_pred HHHHHhCCCHHHHHHH
Q 009331 135 LHTASSQGHVEVVKFL 150 (537)
Q Consensus 135 Lh~A~~~g~~~iv~~L 150 (537)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 7777777777776665
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=65.23 E-value=7.7 Score=37.77 Aligned_cols=189 Identities=10% Similarity=0.058 Sum_probs=91.1
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc-ccCCCCChHHHHHHHcCCHHHHHHHHHhC-C-hhhhcCCCCCChH
Q 009331 58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG-IKARNGYDAFHIAAKQGCLEVLKILMEAL-P-ELLMTFDSSNTTA 134 (537)
Q Consensus 58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~-~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~-~-~~~~~~d~~g~tp 134 (537)
.|..|+..+--....|..+....+++.-.+.... ..+..|...+..+......+-...+++.- + ......|.+|...
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~V 148 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHV 148 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHH
Confidence 4677777777777777777666666543222111 24555655666665555544333333321 1 1111225555555
Q ss_pred HHHHHhCCCHHHHHHHHHcCCC-c-ccccccCCCcHHHHHHHCCcH----HHHHHHHhcCCCCcccCCCCCChHHHHHHh
Q 009331 135 LHTASSQGHVEVVKFLLEKGST-L-ATIARSNGKTALHSAARNGHL----EIVKALLSKEPGIVLRNDKKGQTALHMAVK 208 (537)
Q Consensus 135 Lh~A~~~g~~~iv~~Ll~~~~~-~-~~~~~~~g~tpL~~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 208 (537)
+......+..+..+.+++.-.. . .-..+..|...+..+...... .+++.|..... ....|..|.-.+..+..
T Consensus 149 iQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~--~L~~d~~Gn~ViQ~~l~ 226 (351)
T 3gvo_A 149 VQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE--QLVQDQYGNYVIQHVLE 226 (351)
T ss_dssp HHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHH--HHHTSTTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHH--hcCCCchHHHHHHHHHH
Confidence 5555444443333333332110 0 011122333333333332222 23333332211 12346778888888888
Q ss_pred cCCHHHHHHHHhcCCc-c-cccccCCCCcHHHHHHHhCcHHH
Q 009331 209 GQSIELVDELVKVEPV-I-INMVDAKGNSALHIATRKGRVQI 248 (537)
Q Consensus 209 ~~~~~~v~~Ll~~~~~-~-~n~~d~~G~T~Lh~A~~~~~~~i 248 (537)
.+..+..+.+++.-.. . -=..+..|...+.-+...+..+.
T Consensus 227 ~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~ 268 (351)
T 3gvo_A 227 HGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAE 268 (351)
T ss_dssp HSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred hCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHH
Confidence 8877766666653211 1 11245666667766666665543
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=61.55 E-value=21 Score=34.68 Aligned_cols=193 Identities=16% Similarity=0.178 Sum_probs=101.9
Q ss_pred hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc-cccccC
Q 009331 16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTS-LAGIKA 94 (537)
Q Consensus 16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~ 94 (537)
..++|..|...+......|+.+....+++.-.. .+.+ -..+..|.-.+.-+......+-...+++.-.+. ..-..|
T Consensus 66 ~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g-~~~~--l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d 142 (351)
T 3gvo_A 66 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRG-HVLP--LALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKD 142 (351)
T ss_dssp HHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTT-CHHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHS
T ss_pred HHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHh-hHHH--HhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHh
Confidence 455666666666666666666665555554321 1111 134666777777777777666555555432221 122356
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCCh--hhhcCCCCCChHHHHHHhCCCHH----HHHHHHHcCCCcccccccCCCcH
Q 009331 95 RNGYDAFHIAAKQGCLEVLKILMEALPE--LLMTFDSSNTTALHTASSQGHVE----VVKFLLEKGSTLATIARSNGKTA 168 (537)
Q Consensus 95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~g~~~----iv~~Ll~~~~~~~~~~~~~g~tp 168 (537)
.+|+..+..+...+..+..+.+++.-.. ..-..+..|...+..+......+ +++.|..+ ...-..|.+|.-.
T Consensus 143 ~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~--~~~L~~d~~Gn~V 220 (351)
T 3gvo_A 143 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH--TEQLVQDQYGNYV 220 (351)
T ss_dssp TTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTT--HHHHHTSTTHHHH
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhh--HHhcCCCchHHHH
Confidence 6777666666665554444444443211 11122445555555555444433 33333321 1123457778878
Q ss_pred HHHHHHCCcHHHHHHHHhcCCCC--cccCCCCCChHHHHHHhcCCHH
Q 009331 169 LHSAARNGHLEIVKALLSKEPGI--VLRNDKKGQTALHMAVKGQSIE 213 (537)
Q Consensus 169 L~~A~~~g~~~iv~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~ 213 (537)
+......+..+..+.+++.-... ....++.|...+.-+...+..+
T Consensus 221 iQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~ 267 (351)
T 3gvo_A 221 IQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 267 (351)
T ss_dssp HHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHH
Confidence 88888877776666666542211 1123556666666666665554
No 117
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=58.41 E-value=10 Score=24.35 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=16.5
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHH
Q 009331 467 RGWAVAVTFIGTVIMVSTIGTMSYWVI 493 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (537)
...+|...+++.++.+.+++...|+++
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 345677777777766666665544444
No 118
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=51.09 E-value=33 Score=33.46 Aligned_cols=195 Identities=12% Similarity=0.111 Sum_probs=81.3
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc-ccCCCCChHHHHHHHcCCHHHHHHHHHh-CCh-hhhcCCCCCChH
Q 009331 58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG-IKARNGYDAFHIAAKQGCLEVLKILMEA-LPE-LLMTFDSSNTTA 134 (537)
Q Consensus 58 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~-~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~-~~~~~d~~g~tp 134 (537)
.|..|+..+.-....+..+....+++.-.+.... ..+..|...+.-+......+-...+++. .+. .....|.+|...
T Consensus 74 ~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~V 153 (369)
T 3k49_A 74 NDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHV 153 (369)
T ss_dssp HSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHH
T ss_pred hCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchH
Confidence 4677777777777777776666666542221111 1234454444444444443332223221 111 111124455544
Q ss_pred HHHHHhCCCHHHHHHHHHc--CCCcccccccCCCcHHHHHHHCCcHHHHHHHHhcCCCC--cccCCCCCChHHHHHHhcC
Q 009331 135 LHTASSQGHVEVVKFLLEK--GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI--VLRNDKKGQTALHMAVKGQ 210 (537)
Q Consensus 135 Lh~A~~~g~~~iv~~Ll~~--~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~~ 210 (537)
+......+..+-.+.+++. +.-..-..+..|...+..+...+..+--+.+++.-.+. ....|..|.-.+..+...+
T Consensus 154 iQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~ 233 (369)
T 3k49_A 154 IQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQD 233 (369)
T ss_dssp HHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcC
Confidence 4444443332221222211 00000112333444444444444443333333321111 1123555555555555544
Q ss_pred CH----------HHHHHHHhcCCcccccccCCCCcHHHHHHHhCcHHHHHHHhh
Q 009331 211 SI----------ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLN 254 (537)
Q Consensus 211 ~~----------~~v~~Ll~~~~~~~n~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 254 (537)
.. .+++.+... ..-=..++.|...+..+...+..+.-+.+++
T Consensus 234 ~~~~~~~~~~~~~i~~~l~~~--~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~ 285 (369)
T 3k49_A 234 QFTNKEMVDIKQEIIETVANN--VVEYSKHKFASNVVEKSILYGSKNQKDLIIS 285 (369)
T ss_dssp TTSCHHHHHHHHHHHHHHHTT--HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHT
T ss_pred CchhhhhHhHHHHHHHHHHHH--HHHHHhhhHhhHHHHHHHHhCCHHHHHHHHH
Confidence 32 122222221 0011245566666666666666555555554
No 119
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=50.65 E-value=48 Score=32.27 Aligned_cols=200 Identities=14% Similarity=0.140 Sum_probs=89.0
Q ss_pred hhccCCCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc-cccccC
Q 009331 16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTS-LAGIKA 94 (537)
Q Consensus 16 ~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~ 94 (537)
...+|..|...+......++.+....+++.-.. .+..+ ..+..|.-.+.-+......+-...+++.-.+. ..-..|
T Consensus 71 ~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g-~~~~L--~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d 147 (369)
T 3k49_A 71 ELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKG-NMKQL--SLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKD 147 (369)
T ss_dssp HHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTT-CHHHH--HHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHS
T ss_pred HHhhCcccccHHHHHHHhCCHHHHHHHHHHHhh-hHHHH--hcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcC
Confidence 445556666666666666655554444443221 11111 13455655666666555555444444432111 112246
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhCC--hhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCC--cccccccCCCcHHH
Q 009331 95 RNGYDAFHIAAKQGCLEVLKILMEALP--ELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST--LATIARSNGKTALH 170 (537)
Q Consensus 95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~--~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~ 170 (537)
.+|+..+......+..+..+.+++.-. -..-..+..|...+..+...+..+--+.+++.=.+ ..-..|..|...+.
T Consensus 148 ~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ 227 (369)
T 3k49_A 148 QNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQ 227 (369)
T ss_dssp TTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHH
T ss_pred cccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 666665555555444332222222110 01112245565566666555555444444433111 11233455555555
Q ss_pred HHHHCCcH----------HHHHHHHhcCCCCcccCCCCCChHHHHHHhcCCHHHHHHHHh
Q 009331 171 SAARNGHL----------EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220 (537)
Q Consensus 171 ~A~~~g~~----------~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 220 (537)
.+...+.. .+++.+..+-.. ...++.|...+.-+...+..+.-+.+++
T Consensus 228 ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~--Ls~~k~gS~Vvek~l~~~~~~~r~~ii~ 285 (369)
T 3k49_A 228 YVLQQDQFTNKEMVDIKQEIIETVANNVVE--YSKHKFASNVVEKSILYGSKNQKDLIIS 285 (369)
T ss_dssp HHHTCCTTSCHHHHHHHHHHHHHHHTTHHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHT
T ss_pred HHHhcCCchhhhhHhHHHHHHHHHHHHHHH--HHhhhHhhHHHHHHHHhCCHHHHHHHHH
Confidence 55544431 223333222111 1234556666666666666555555554
No 120
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=47.05 E-value=9 Score=24.69 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=14.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 009331 469 WAVAVTFIGTVIMVSTIGTMSYWVI 493 (537)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (537)
.+|...+++.++.+.+++...++++
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHh
Confidence 4456666766666666654444444
No 121
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.07 E-value=41 Score=24.67 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=19.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 009331 468 GWAVAVTFIGTVIMVSTIGTMSYWVIV 494 (537)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (537)
.++++..+++++++++++.++.|.++.
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777788888877777776544
No 122
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=40.09 E-value=45 Score=21.38 Aligned_cols=9 Identities=11% Similarity=0.346 Sum_probs=4.8
Q ss_pred HHHHHHHHh
Q 009331 469 WAVAVTFIG 477 (537)
Q Consensus 469 ~~~~~~~~~ 477 (537)
.++...++|
T Consensus 12 ~~Ia~~vVG 20 (44)
T 2jwa_A 12 TSIISAVVG 20 (44)
T ss_dssp HHHHHHHHH
T ss_pred cchHHHHHH
Confidence 445555555
No 123
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=35.70 E-value=1.6e+02 Score=28.36 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=19.4
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHhhhc
Q 009331 342 MHTEGLNNAINSTTVVAVLIATVAFAAI 369 (537)
Q Consensus 342 ~~~e~~~~~~~~~~~va~liatv~f~a~ 369 (537)
.....+++.-..+++++++++-.||-||
T Consensus 294 ~is~~~N~imk~LTiit~IflP~T~IaG 321 (363)
T 2iub_A 294 SVSNKTNEVMKVLTIIATIFMPLTFIAG 321 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555578888888888888883
No 124
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.70 E-value=1.5e+02 Score=28.23 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=14.0
Q ss_pred hhhhcchhHHHHHHHHHHHhhh
Q 009331 347 LNNAINSTTVVAVLIATVAFAA 368 (537)
Q Consensus 347 ~~~~~~~~~~va~liatv~f~a 368 (537)
.++.-..+++++++++-.||-|
T Consensus 275 ~N~~mk~LTiit~IflP~T~Ia 296 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWIT 296 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445777777777777776
No 125
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=32.72 E-value=96 Score=19.68 Aligned_cols=28 Identities=7% Similarity=0.341 Sum_probs=18.3
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 009331 467 RGWAVAVTFIGTVIMVSTIGTMSYWVIV 494 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (537)
..+++...+++++++++++.++.|.++.
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~~ 35 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777766666553
No 126
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=31.22 E-value=2.2e+02 Score=27.09 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhe
Q 009331 439 INKLMWLACIMISVAFLALSYIV 461 (537)
Q Consensus 439 ~~~~~~~~~~~~~~af~~~~~~~ 461 (537)
.+.|-.++.+++..+|++|+|=+
T Consensus 279 mk~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 279 MKILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhccC
Confidence 44566788899999999999954
No 127
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=28.27 E-value=1.2e+02 Score=29.80 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=16.9
Q ss_pred HHHcCCHHHHHHHHhhCCch
Q 009331 30 LVRTGSVELVLDMISSYGDM 49 (537)
Q Consensus 30 A~~~g~~~~v~~Ll~~~~~~ 49 (537)
.+..|+...|+..+..|+++
T Consensus 29 gv~e~~~~~ve~y~~~gg~~ 48 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDI 48 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCT
T ss_pred HHHcCChhHHHHHHhcCCch
Confidence 45689999999999999865
No 128
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=23.60 E-value=3.4e+02 Score=23.11 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHcCCHHHHHHHHhhCCchhHHHHHHcccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccCCCCChH
Q 009331 21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA 100 (537)
Q Consensus 21 ~~~~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 100 (537)
.+.++-+..|+..|+++....+.+...+ .......=..|...|++++++.......+... .
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~----------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~---------L 66 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKLND----------SITWERLIQEALAQGNASLAEMIYQTQHSFDK---------L 66 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH---------H
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH---------H
Q ss_pred HHHHHHcCCHHHHHHHHHhCChhhhcCCCCCChHHHHHHhCCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHCCcHHH
Q 009331 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI 180 (537)
Q Consensus 101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~i 180 (537)
+.+....|+.+-++.+.+.... ..+-....+.+...|+.+-..-++........ +...|-.+|..++
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~-----~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~e--------A~~~A~t~g~~~~ 133 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQT-----REDFGSMLLNTFYNNSTKERSSIFAEGGSLPL--------AYAVAKANGDEAA 133 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH--------HHHHHHHTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-----CccHHHHHHHHHHcCCHHHHHHHHHHCCChHH--------HHHHHHHcCcHHH
Q ss_pred HHHHHh
Q 009331 181 VKALLS 186 (537)
Q Consensus 181 v~~Ll~ 186 (537)
.+.+++
T Consensus 134 a~~~~~ 139 (177)
T 3mkq_B 134 ASAFLE 139 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 129
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.12 E-value=1.2e+02 Score=20.29 Aligned_cols=19 Identities=5% Similarity=0.380 Sum_probs=11.3
Q ss_pred chHHHHHHHHhhHHHHHHH
Q 009331 467 RGWAVAVTFIGTVIMVSTI 485 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~ 485 (537)
.|+.+.+.++++.+++.++
T Consensus 8 p~WiIi~svl~GLLLL~Li 26 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLL 26 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4666666666665555444
No 130
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.68 E-value=90 Score=20.98 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=11.1
Q ss_pred chHHHHHHHHhhHHHHHHH
Q 009331 467 RGWAVAVTFIGTVIMVSTI 485 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~ 485 (537)
.||.+.+.++++.+++.++
T Consensus 11 p~wiIi~svl~GLllL~li 29 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4666666666665554444
No 131
>3arc_F Cytochrome B559 subunit beta; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_F* 3a0b_F* 3a0h_F* 1w5c_F* 3kzi_F* 3bz1_F* 1s5l_F* 2axt_F* 3bz2_F* 3prq_F* 3prr_F*
Probab=20.27 E-value=88 Score=19.49 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=16.8
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHH
Q 009331 467 RGWAVAVTFIGTVIMVSTIGTMSY 490 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
+|+++--..+-.+++++.+..|||
T Consensus 18 RWlAvH~lavPtVfflGai~AmQf 41 (44)
T 3arc_F 18 RWVAVHTLAVPTIFFLGAIAAMQF 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ehhhhhcccccceeeccHHHHHHH
Confidence 688776666667777777766654
Done!