Query 009332
Match_columns 537
No_of_seqs 364 out of 2393
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 00:06:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 3E-118 1E-122 941.4 40.2 458 17-509 3-461 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 4E-115 1E-119 920.5 32.5 460 17-509 22-500 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 6E-108 2E-112 872.0 37.6 458 19-509 2-460 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 100.0 8.4E-85 2.9E-89 687.3 34.3 365 14-400 16-390 (414)
5 2csx_A Methionyl-tRNA syntheta 100.0 5.5E-63 1.9E-67 534.8 21.8 400 39-450 4-466 (497)
6 2d5b_A Methionyl-tRNA syntheta 100.0 2.1E-61 7E-66 523.1 24.9 396 41-450 4-467 (500)
7 3u1f_A Methionyl-tRNA syntheta 100.0 4.3E-60 1.5E-64 517.7 28.3 404 39-451 8-498 (542)
8 1rqg_A Methionyl-tRNA syntheta 100.0 2.5E-59 8.7E-64 523.6 28.4 406 42-451 6-520 (722)
9 4dlp_A Aminoacyl-tRNA syntheta 100.0 3.3E-59 1.1E-63 509.1 25.5 412 30-450 15-496 (536)
10 2x1l_A Methionyl-tRNA syntheta 100.0 2.8E-59 9.6E-64 508.9 22.9 406 37-450 9-489 (524)
11 3kfl_A Methionyl-tRNA syntheta 100.0 2.8E-58 9.7E-63 503.4 28.0 413 29-450 14-513 (564)
12 3h99_A Methionyl-tRNA syntheta 100.0 6.9E-58 2.4E-62 501.2 29.7 413 33-450 11-519 (560)
13 1iq0_A Arginyl-tRNA synthetase 100.0 6.8E-54 2.3E-58 470.3 17.4 382 39-440 104-589 (592)
14 2zue_A Arginyl-tRNA synthetase 100.0 1.7E-51 5.7E-56 452.6 19.5 383 36-440 117-626 (629)
15 1f7u_A Arginyl-tRNA synthetase 100.0 5.9E-49 2E-53 429.4 17.8 361 36-440 141-604 (607)
16 1gax_A Valrs, valyl-tRNA synth 100.0 1.9E-45 6.6E-50 416.4 30.4 402 40-451 36-695 (862)
17 1irx_A Lysyl-tRNA synthetase; 100.0 6.6E-48 2.2E-52 417.9 8.7 271 42-339 21-337 (523)
18 1ile_A Ilers, isoleucyl-tRNA s 100.0 1.4E-44 4.9E-49 411.0 23.7 407 38-452 36-771 (821)
19 1ffy_A Isoleucyl-tRNA syntheta 100.0 1.6E-43 5.4E-48 403.9 29.1 410 38-451 46-772 (917)
20 1wkb_A Leucyl-tRNA synthetase; 100.0 1.5E-43 5E-48 403.0 28.4 204 236-450 603-809 (810)
21 4arc_A Leucine--tRNA ligase; l 100.0 1.2E-42 4.1E-47 392.3 29.7 407 30-451 42-797 (880)
22 1wz2_A Leucyl-tRNA synthetase; 100.0 4.8E-42 1.6E-46 395.3 26.5 206 235-451 602-810 (967)
23 2v0c_A Aminoacyl-tRNA syntheta 100.0 5.5E-41 1.9E-45 381.5 31.3 428 38-482 31-834 (878)
24 3fnr_A Arginyl-tRNA synthetase 100.0 1E-39 3.4E-44 345.6 28.8 356 36-440 28-451 (464)
25 3aii_A Glutamyl-tRNA synthetas 100.0 2.8E-35 9.5E-40 312.8 8.2 251 45-331 101-395 (553)
26 1qtq_A GLNRS, protein (glutami 100.0 3.1E-34 1.1E-38 304.7 12.8 251 45-330 31-332 (553)
27 2hz7_A Glutaminyl-tRNA synthet 100.0 2.7E-33 9.1E-38 309.3 12.0 262 36-329 60-371 (851)
28 2cfo_A Glutamyl-tRNA synthetas 100.0 1.2E-29 4.2E-34 269.7 13.0 238 46-327 7-296 (492)
29 1nzj_A Hypothetical protein YA 99.9 5.3E-28 1.8E-32 241.9 10.5 209 46-296 11-241 (298)
30 2o5r_A Glutamyl-tRNA synthetas 99.9 2E-20 6.9E-25 198.8 23.9 228 38-312 11-292 (481)
31 1j09_A Glutamyl-tRNA synthetas 99.8 3.1E-20 1.1E-24 196.3 18.2 235 46-327 7-291 (468)
32 4g6z_A Glutamate-tRNA ligase; 99.8 1.7E-19 5.8E-24 190.4 20.3 237 46-328 31-312 (490)
33 3afh_A Glutamyl-tRNA synthetas 99.8 3.4E-19 1.2E-23 189.1 21.1 230 46-326 31-301 (488)
34 3al0_C Glutamyl-tRNA(Gln) amid 99.8 1.3E-19 4.3E-24 196.6 18.1 224 39-314 129-391 (592)
35 2ja2_A Glutamyl-tRNA synthetas 99.7 5.7E-16 2E-20 164.4 21.8 235 46-326 12-304 (498)
36 4gri_A Glutamate--tRNA ligase; 99.7 1.1E-15 3.9E-20 164.0 20.0 248 46-328 30-322 (512)
37 2cyb_A Tyrosyl-tRNA synthetase 98.7 1.4E-07 4.7E-12 95.6 14.3 69 236-312 170-239 (323)
38 2g36_A Tryptophanyl-tRNA synth 98.4 6E-07 2.1E-11 91.1 9.0 209 41-312 13-230 (340)
39 2dlc_X Tyrosyl-tRNA synthetase 98.1 7.1E-06 2.4E-10 85.0 8.6 69 235-311 181-252 (394)
40 2cya_A Tyrosyl-tRNA synthetase 98.0 1.7E-05 5.8E-10 81.2 10.0 85 41-135 36-121 (364)
41 1n3l_A Tyrosyl-tRNA synthetase 98.0 4.1E-06 1.4E-10 86.1 4.5 69 235-311 177-247 (372)
42 2zp1_A Tyrosyl-tRNA synthetase 97.9 2.5E-05 8.4E-10 78.5 9.6 81 41-135 29-109 (314)
43 2el7_A Tryptophanyl-tRNA synth 97.9 0.0003 1E-08 71.2 16.6 71 235-312 140-220 (337)
44 1y42_X Tyrosyl-tRNA synthetase 97.8 2.5E-05 8.5E-10 80.6 7.6 74 236-312 232-321 (392)
45 3hzr_A Tryptophanyl-tRNA synth 97.8 8.7E-05 3E-09 76.2 11.2 75 38-124 80-155 (386)
46 3tzl_A Tryptophanyl-tRNA synth 97.8 1.1E-05 3.9E-10 81.1 3.7 78 229-312 132-217 (322)
47 2jan_A Tyrosyl-tRNA synthetase 97.7 1.9E-05 6.5E-10 82.3 4.6 72 236-312 187-260 (432)
48 3vgj_A Tyrosyl-tRNA synthetase 97.7 0.0002 6.8E-09 73.4 11.8 69 236-311 200-272 (373)
49 1h3f_A Tyrosyl-tRNA synthetase 97.7 0.00013 4.3E-09 76.2 9.8 69 236-312 187-257 (432)
50 1jil_A Tyrrs, tyrosyl-tRNA syn 97.6 4.1E-05 1.4E-09 79.8 5.7 72 236-312 186-259 (420)
51 3i05_A Tryptophanyl-tRNA synth 97.5 7.2E-05 2.5E-09 77.1 5.9 76 38-124 76-152 (395)
52 2cyc_A Tyrosyl-tRNA synthetase 97.5 0.00018 6.3E-09 73.8 8.9 78 229-312 173-277 (375)
53 2ts1_A Tyrosyl-tRNA synthetase 97.5 5.6E-05 1.9E-09 78.6 4.8 72 236-312 185-258 (419)
54 2j5b_A Tyrosyl-tRNA synthetase 97.5 0.00022 7.4E-09 72.6 8.8 84 41-134 41-126 (348)
55 3hv0_A Tryptophanyl-tRNA synth 97.5 0.00041 1.4E-08 71.4 10.6 77 38-124 72-149 (393)
56 1yi8_B Tryptophanyl-tRNA synth 97.5 8.6E-05 2.9E-09 75.6 5.1 72 235-312 161-240 (351)
57 3jxe_A Tryptophanyl-tRNA synth 97.4 0.00022 7.6E-09 73.3 8.0 83 42-135 75-159 (392)
58 3tze_A Tryptophanyl-tRNA synth 97.2 0.00049 1.7E-08 71.0 7.7 76 38-124 99-175 (406)
59 2yy5_A Tryptophanyl-tRNA synth 97.2 0.00025 8.7E-09 72.0 5.2 80 42-135 6-87 (348)
60 2ip1_A Tryptophanyl-tRNA synth 97.2 0.00044 1.5E-08 72.2 7.0 76 38-124 100-177 (432)
61 1r6t_A Tryptophanyl-tRNA synth 97.2 0.0011 3.6E-08 70.2 9.4 75 38-124 153-229 (477)
62 1r6u_A Tryptophanyl-tRNA synth 97.1 0.00029 1E-08 73.5 4.8 75 38-124 106-182 (437)
63 1i6k_A TRPRS, tryptophanyl-tRN 97.1 0.00047 1.6E-08 69.5 6.0 78 42-133 3-82 (328)
64 3p0j_A Tyrosyl-tRNA synthetase 97.1 0.00062 2.1E-08 75.1 6.9 87 40-137 40-129 (690)
65 3a04_A Tryptophanyl-tRNA synth 96.8 0.0084 2.9E-07 61.3 12.0 90 37-137 67-157 (372)
66 3foc_A Tryptophanyl-tRNA synth 96.7 0.0031 1.1E-07 65.8 8.5 77 38-124 89-166 (451)
67 3prh_A Tryptophanyl-tRNA synth 96.7 0.0012 4.2E-08 67.6 5.3 78 43-133 38-116 (388)
68 3n9i_A Tryptophanyl-tRNA synth 96.3 0.0015 5.2E-08 66.0 3.0 77 43-133 18-96 (346)
69 2yxn_A Tyrosyl-tRNA synthetase 96.2 0.0018 6.1E-08 65.1 2.7 72 236-312 191-263 (322)
70 3sz3_A Tryptophanyl-tRNA synth 96.2 0.0019 6.4E-08 65.3 2.6 79 43-134 9-88 (341)
71 2pid_A Tyrosyl-tRNA synthetase 95.9 0.0031 1E-07 64.2 2.5 72 236-312 210-282 (356)
72 2pid_A Tyrosyl-tRNA synthetase 77.7 1.5 5.1E-05 44.3 3.8 38 41-82 47-85 (356)
73 2yxn_A Tyrosyl-tRNA synthetase 72.7 2 7E-05 42.6 3.3 39 41-83 34-73 (322)
74 3p0j_A Tyrosyl-tRNA synthetase 60.4 37 0.0013 37.2 10.4 81 46-135 388-469 (690)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=2.8e-118 Score=941.40 Aligned_cols=458 Identities=45% Similarity=0.752 Sum_probs=357.7
Q ss_pred CceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHH
Q 009332 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAN 96 (537)
Q Consensus 17 ~~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~ 96 (537)
.+|+|||||||+||+|.|..+++|+||+|||||||++||||+|++|++|+++|||+++||+|.||+|+||+|+||+.+|+
T Consensus 3 m~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~ 82 (462)
T 3tqo_A 3 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAG 82 (462)
T ss_dssp CCCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHH
T ss_pred ceEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeee-ecceeecCCCCCCCCCCcchh
Q 009332 97 DLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQR 175 (537)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~-~~~v~f~~~~~~~yG~ls~~~ 175 (537)
++|++|++++++|.+.|.++|++|||.+++.+||+|+|++.++++|++|+++|+||++ +|+||||+++++.||+||+++
T Consensus 83 ~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~ 162 (462)
T 3tqo_A 83 ENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRH 162 (462)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccCCC
Confidence 9999999999999999999999999998899999999999999999999999999998 799999999999999999999
Q ss_pred chhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhH
Q 009332 176 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (537)
Q Consensus 176 l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~ 255 (537)
++++..|++++.+.+|++|.||+|||.+++|+|+|+||||.||||||||||+|+.++||.++|||+||.||+||||+|++
T Consensus 163 ~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHhenei 242 (462)
T 3tqo_A 163 LDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEI 242 (462)
T ss_dssp CC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHH
T ss_pred hHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHH
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Q 009332 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYI 335 (537)
Q Consensus 256 a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l 335 (537)
||++|+.+.+|++||+|+|+|+++|+|||||+||+|+++|++++|++|++|||++++||+++++||++.+.++.+.+.+|
T Consensus 243 aqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl 322 (462)
T 3tqo_A 243 AQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERF 322 (462)
T ss_dssp HHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhH
Q 009332 336 YQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 415 (537)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~ 415 (537)
++++.++.. . . . ..+..+.+.|.+||+||||||.|++. |+++++.+|++.+...
T Consensus 323 ~~~~~~~~~----~---~-~--------~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~~~--------- 376 (462)
T 3tqo_A 323 YLALRGLPV----V---N-H--------EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDNNQ--------- 376 (462)
T ss_dssp HHHHTTCCC----------------------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhhh----c---c-c--------hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcccc---------
Confidence 888754311 0 0 0 01345678899999999999999999 9999999999875432
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhcCCChhHhHHHHHHcHhCC
Q 009332 416 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKG 495 (537)
Q Consensus 416 ~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~~Kdf~~AD~IRd~L~~~G 495 (537)
...+..+...+..++.+|||... ..+...+. . ...+.+++|+.||++|++||++|||++||+|||+|.++|
T Consensus 377 --~~~~~~~~~~~~~~~~vlg~~~~-~~~~~~~~---~---~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~G 447 (462)
T 3tqo_A 377 --IEKAAVLAAELKCLGNIFGLLQY-SPEQFLQG---A---KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLG 447 (462)
T ss_dssp --HHHHHHHHHHHHHHHGGGTCSCS-CHHHHC------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHhcCCCcc-chhhhhhc---c---ccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCC
Confidence 11233455678889999999764 22221110 0 012345789999999999999999999999999999999
Q ss_pred CEEEecCCceEEEe
Q 009332 496 IALMDMGKETIWRP 509 (537)
Q Consensus 496 I~l~D~~~Gt~W~~ 509 (537)
|.|+|||+||+|++
T Consensus 448 i~l~D~~~g~~w~~ 461 (462)
T 3tqo_A 448 VAIEDSSDGTSWRQ 461 (462)
T ss_dssp --------------
T ss_pred cEEEEcCCCcEEEe
Confidence 99999999999986
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=4.2e-115 Score=920.47 Aligned_cols=460 Identities=29% Similarity=0.477 Sum_probs=357.5
Q ss_pred CceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchh---------
Q 009332 17 LTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDV--------- 87 (537)
Q Consensus 17 ~~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~--------- 87 (537)
.+|+|||||||+||+|.|.. +|+||+|||||||.+||||+|++|++|+|+|||+++||+|.||+|+||+
T Consensus 22 m~l~lyntltr~ke~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~De 99 (501)
T 3sp1_A 22 MILKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDD 99 (501)
T ss_dssp CCEEEEETTTTEEEEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC------
T ss_pred CeEEEEECCCCccccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCC
Confidence 46999999999999999987 9999999999999999999999999999999999999999999999998
Q ss_pred -hHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCC
Q 009332 88 -DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 166 (537)
Q Consensus 88 -d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~ 166 (537)
|+||+.+|+++|++|++++++|++.|.++|++|||.+++.+|++++|++.++++|++|+++|+||+++++||||+++++
T Consensus 100 hddKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f~ 179 (501)
T 3sp1_A 100 GEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFK 179 (501)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGCT
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCccC
Confidence 9999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCCCCcchhc-hhhhcCCCccccccccCCccceeccc--c-cCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEe
Q 009332 167 NYGRLSGQRL-ENNRAGERVAVDSRKRNPADFALWKA--A-KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (537)
Q Consensus 167 ~yG~ls~~~l-~~~~~g~~~~~~~~k~~~~df~lwk~--~-~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~ 242 (537)
.||+||+.++ +++.+|++++++..|++|.||+|||. . ++++|+|++|||.||||||||||+|+.+|||.++|||+|
T Consensus 180 ~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~g 259 (501)
T 3sp1_A 180 SYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLG 259 (501)
T ss_dssp TTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEee
Confidence 9999999999 88988999888888999999999998 3 468899999999999999999999999999999999999
Q ss_pred cccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHh-cChhhHHHHHhhcCCCCCcccC
Q 009332 243 GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYS 321 (537)
Q Consensus 243 G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs 321 (537)
|+||+||||+||+||++|+++++|++||+|+|||+++|+|||||+||+|+|.|++++ |++|++||||++.||+++++||
T Consensus 260 G~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~fs 339 (501)
T 3sp1_A 260 GVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFS 339 (501)
T ss_dssp EGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEECC
T ss_pred ccccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCccC
Confidence 999999999999999999998999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHH
Q 009332 322 VLQLDSASDA----VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKF 397 (537)
Q Consensus 322 ~~~l~~~~~~----l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~ 397 (537)
++.+.++.+. +.+|++++.++........... ....+ ...+..+.+.|.+||+||||||.|++. |+++++.
T Consensus 340 ~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~f~~am~dDlnt~~al~~-l~~~~~~ 414 (501)
T 3sp1_A 340 LDNLQASKIARENLINKLSYFYESLDPVDLNTLNKD-LKNFG---FSVEKEYYDSFVEKISFDLNVAQGLAL-LWEIIKS 414 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSC-TTSCS---SHHHHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhccccccc-ccchh---hhhHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHH
Confidence 9999999999 7777777665432211100000 00011 123456788999999999999999999 9999998
Q ss_pred HHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhc
Q 009332 398 INSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARK 477 (537)
Q Consensus 398 ~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~ 477 (537)
+| + . .. .....+..++.+|||... ...++. . .......+++|+.||++|++||+
T Consensus 415 ~~--~---~----~~----------~~~~~~~~~~~vlGl~~~---~~~~~~---~-~~~~~~~~~~i~~li~~R~~ar~ 468 (501)
T 3sp1_A 415 DN--L---S----FV----------SKLRLAFIFDEIMSLNLR---EEILKN---L-QNHDVVIDENMKALIEERRIAKC 468 (501)
T ss_dssp SS--S---C----HH----------HHHHHHHHHHHHHCCCHH---HHHHHH---H-TTSCCCCCHHHHHHHHHHHHHHH
T ss_pred hc--c---C----HH----------HHHHHHHHHHHHcCCCcc---cchhhc---c-cccchhhHHHHHHHHHHHHHHHH
Confidence 75 1 1 00 112556777899998642 111110 0 00122456889999999999999
Q ss_pred CCChhHhHHHHHHcHhCCCEEEecCCceEEEe
Q 009332 478 NKDFSKSDQIRADLTRKGIALMDMGKETIWRP 509 (537)
Q Consensus 478 ~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~W~~ 509 (537)
+|||++||+|||+|.++||.|+|+|+||+|++
T Consensus 469 ~kd~~~aD~iRd~L~~~Gi~l~D~~~g~~w~~ 500 (501)
T 3sp1_A 469 EKNFKRADEIRDFFAKKGFVLVDTKEGTKVKR 500 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCC----------
T ss_pred ccCHHHHHHHHHHHHHCCcEEEEcCCCcEEEe
Confidence 99999999999999999999999999999986
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=6.3e-108 Score=872.00 Aligned_cols=458 Identities=45% Similarity=0.765 Sum_probs=352.5
Q ss_pred eeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHc
Q 009332 19 LKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL 98 (537)
Q Consensus 19 l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~ 98 (537)
|+|||||||+||+|.|+.+++|+||+|||||||++||||+|++|++|+++|+|++.||+|.||+|+||+|+||+.+|+++
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~ 81 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeee-ecceeecCCCCCCCCCCcchhch
Q 009332 99 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLE 177 (537)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~-~~~v~f~~~~~~~yG~ls~~~l~ 177 (537)
|++|++++++|.+.|.++|++|||.+++.++|+|+|++.+++++++|+++|+||+. +|+||||+++++.||+++++.++
T Consensus 82 g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~ 161 (461)
T 1li5_A 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLD 161 (461)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHH
Confidence 99999999999999999999999997799999999999999999999999999999 99999999999999999999888
Q ss_pred hhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHH
Q 009332 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (537)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~ 257 (537)
++.+|++++.+..|++|.||++||..++|+|+|++|||.|+||||+||++|+.++||.++|||+||+||+||||+||+||
T Consensus 162 ~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq 241 (461)
T 1li5_A 162 QLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241 (461)
T ss_dssp -------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHH
T ss_pred HhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHH
Confidence 88889998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Q 009332 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (537)
Q Consensus 258 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~ 337 (537)
++|+.+.+|+++|+|+|||+++|+|||||+||+|++.|+++.|++|++|||+|++||+++++||++.+.++.+.+.++++
T Consensus 242 ~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n 321 (461)
T 1li5_A 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYT 321 (461)
T ss_dssp HHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99987778999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHH
Q 009332 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL 417 (537)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~ 417 (537)
++.++ .. .. .+ + .+..+.+.|.++|+||||+|.|++. |++|++.+|+|++. . .
T Consensus 322 ~~~~~----~~----~~-~~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~~l~~~~N~~~~~-~----~------ 374 (461)
T 1li5_A 322 ALRGT----DK----TV-AP-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAE-D----M------ 374 (461)
T ss_dssp HHTTC----CT----TS-CC-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHH-C----H------
T ss_pred HHHHh----hc----CC-CH-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHhc-c----H------
Confidence 76543 11 00 11 1 3567788999999999999999999 99999999999965 2 0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhcCCChhHhHHHHHHcHhCCCE
Q 009332 418 IESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 497 (537)
Q Consensus 418 ~~~l~~~~~~l~~~l~vLGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~ 497 (537)
..+..+...|..++.+|||... .+.... + .. .....+..++|+.||++|++||++|||++||+|||+|.++||.
T Consensus 375 -~~~~~~~~~~~~~~~~lG~~~~-~~~~~~-~--~~-~~~~~~~~~~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~ 448 (461)
T 1li5_A 375 -AAANAMASHLRKLSAVLGLLEQ-EPEAFL-Q--SG-AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIV 448 (461)
T ss_dssp -HHHHHHHHHHHHHHTTTTCSCS-CHHHHC--------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHcCCCcc-Chhhhh-h--cc-cccccccHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCE
Confidence 1344556788899999999542 222111 0 00 0000001146889999999999999999999999999999999
Q ss_pred EEecCCceEEEe
Q 009332 498 LMDMGKETIWRP 509 (537)
Q Consensus 498 l~D~~~Gt~W~~ 509 (537)
|+|+|+||+|++
T Consensus 449 ~~d~~~g~~w~~ 460 (461)
T 1li5_A 449 LEDGPQGTTWRR 460 (461)
T ss_dssp ------------
T ss_pred EEEcCCCcEEEe
Confidence 999999999985
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=8.4e-85 Score=687.25 Aligned_cols=365 Identities=34% Similarity=0.546 Sum_probs=323.4
Q ss_pred CCCCceeeeeccCCCccccccCCCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHH
Q 009332 14 KMDLTLKIYNSMTQQKELFTPIVPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR 93 (537)
Q Consensus 14 ~~~~~l~l~ntl~~~~~~f~p~~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~ 93 (537)
+..++|+||||+|+++++|.| +++|++|+|||||||++||||+|++|++|+|+|+|+++||+|.|++|+||+|+||+.
T Consensus 16 ~~~~~~~lynt~~~~~~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~ 93 (414)
T 3c8z_A 16 GRGPALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFE 93 (414)
T ss_dssp SCCCCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHH
T ss_pred CCCCCcEEEeeccCCcccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHH
Confidence 335689999999999999999 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeee----cceeecCCCCCCCC
Q 009332 94 RANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE----GDVFFAVEKSPNYG 169 (537)
Q Consensus 94 ~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~----~~v~f~~~~~~~yG 169 (537)
+|+++|++|++++++|.+.|.++|++|||.++|.++|+|+|++.++++|++|+++|++|+++ +++||++++++.||
T Consensus 94 ~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g 173 (414)
T 3c8z_A 94 RAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFG 173 (414)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhH
Confidence 99999999999999999999999999999867999999999999999999999999999988 99999999999999
Q ss_pred CCcchhchhhhcC--CC-ccc-cccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEeccc
Q 009332 170 RLSGQRLENNRAG--ER-VAV-DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (537)
Q Consensus 170 ~ls~~~l~~~~~g--~~-~~~-~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~D 245 (537)
++++...+++..+ ++ +++ ...|++|.||++||...+|++.|++|||.|+||||+||++|+.++||.++|||++|+|
T Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D 253 (414)
T 3c8z_A 174 YESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSD 253 (414)
T ss_dssp TTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGG
T ss_pred hhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccc
Confidence 9988776666432 11 233 3458899999999998899999999999999999999999999999999999999999
Q ss_pred CcCccchhhHHHhhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHhHHHHh-cChhhHHHHHhhcCCCCCcccCHH
Q 009332 246 LIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVL 323 (537)
Q Consensus 246 l~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs~~ 323 (537)
|+||||+|+++|+.|+.+. +|+++|+|+|||+++|+|||||+||+|++.|++++ |++|++|||+++.+++++++||++
T Consensus 254 ~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~ 333 (414)
T 3c8z_A 254 LIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNE 333 (414)
T ss_dssp GTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHH
T ss_pred cccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHH
Confidence 9999999999999998664 88999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHH
Q 009332 324 QLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (537)
Q Consensus 324 ~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~ 400 (537)
.+.++.+.+.+|+++++++ . + + .+.++.+.|.++|+|+|+++.|++. |++|++.+|+
T Consensus 334 ~l~~~~~~l~~l~n~~~~~----~-----~---~-------~~~~~~~~v~~a~~d~~~~~~Al~~-i~~~~~~~n~ 390 (414)
T 3c8z_A 334 VLDEANARLARWRSATALP----E-----A---P-------DATDVIARVRQYLADDLDTPKALAA-LDGWCTDALS 390 (414)
T ss_dssp HHHHHHHHHHHHHHHHTSS----C-----B---S-------CCHHHHHHHHHHHHBTCCHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----c-----c---h-------hHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHh
Confidence 9999999998888876543 1 0 1 1245678899999889999999999 9999999998
No 5
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=5.5e-63 Score=534.81 Aligned_cols=400 Identities=19% Similarity=0.228 Sum_probs=302.9
Q ss_pred cceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009332 39 KVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 39 ~v~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
+.++|+|+|+|| |++||||+|+++++|+++|++++.||+|.+++|+|+||+||+.+|+++|.+|++++++|.+.|.++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 357999999988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCCCCCCcchhchhhh
Q 009332 117 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRLENNR 180 (537)
Q Consensus 117 l~~l~i~~~~~~~r~s~--~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~yG~ls~~~l~~~~ 180 (537)
|++|||. +|.++++++ |++.+++++++|+++|++|+++..++||+.+ |+.||. .++.+.
T Consensus 84 ~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~ 158 (497)
T 2csx_A 84 WEFLKIE-YTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQK----KCEYIK 158 (497)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC-------------------------------------C
T ss_pred HHHhCCc-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCC----CCeEEe
Confidence 9999997 688889887 9999999999999999999998888888753 233332 122111
Q ss_pred cCCC-ccccc--------cccCCcccee----------cccccCCC-----CccccCCCCCCC---chhhh---------
Q 009332 181 AGER-VAVDS--------RKRNPADFAL----------WKAAKAGE-----PSWDSPWGPGRP---GWHIE--------- 224 (537)
Q Consensus 181 ~g~~-~~~~~--------~k~~~~df~l----------wk~~~~g~-----~~w~~~wG~g~P---gWhie--------- 224 (537)
.++. +.++. .+.+| ++.. |......+ |+|+.+||.++| +||+.
T Consensus 159 ~~~wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~ 237 (497)
T 2csx_A 159 EPSYFFRLSKYQDKLLELYEKNP-EFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNY 237 (497)
T ss_dssp CEEEEECTTSSHHHHHHHHHHCT-TSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHH
T ss_pred cCceEEEcHHHHHHHHHHHHhCC-CeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhh
Confidence 1100 00000 01111 1111 11100112 345789999999 78887
Q ss_pred hHHHHH---hhcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcC
Q 009332 225 CSAMSA---HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYH 301 (537)
Q Consensus 225 cs~m~~---~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~ 301 (537)
|++|.. ++| ++|+|++|+|++||||++|++++.+++. +|++.|+|||||+++|+|||||+||+|+|.|++++||
T Consensus 238 ~s~~~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~g~-~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g 314 (497)
T 2csx_A 238 ISALEDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSLGY-ELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYG 314 (497)
T ss_dssp HHTTTTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHHTC-CCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHC
T ss_pred cccCCCcchhhC--CceEEEeecchhHhHHHHHHHHHHHcCC-CCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCC
Confidence 888865 677 7899999999999999999999988754 4555668899999999999999999999999999999
Q ss_pred hhhHHHHHhh-cCCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 009332 302 PLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378 (537)
Q Consensus 302 ~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~ 378 (537)
+|++|||+++ .+++++++||++.+.++.+. ..+++|+++|+.+.+.+........+.+++++..+.++.+.+.++|
T Consensus 315 ~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~- 393 (497)
T 2csx_A 315 LDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENYM- 393 (497)
T ss_dssp HHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCTTHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH-
Confidence 9999999998 69999999999999987654 3445566666655543321111113467899999999999999999
Q ss_pred hccChhhhhHHHHHHHHHHHHHHHhhhcccCchh-hh-HHHHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHH
Q 009332 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQ-LSLIESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQL 450 (537)
Q Consensus 379 dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~ 450 (537)
++++++.|++. |++|++.+|+|++.+++|...+ .. ......+..+..+|+.++.+| .|+|. .++++|+.+
T Consensus 394 ~~~~~~~a~~~-l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~-~aeei~~~L 466 (497)
T 2csx_A 394 EKVNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPN-KMKEALQML 466 (497)
T ss_dssp TTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHT
T ss_pred HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCH-HHHHHHHHc
Confidence 99999999999 9999999999999999884322 11 112233445566677777777 47776 566666554
No 6
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.1e-61 Score=523.14 Aligned_cols=396 Identities=20% Similarity=0.206 Sum_probs=302.5
Q ss_pred eEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009332 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 41 ~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
++|+|+|+|| |++||||+|+++++|+++|++|++||+|.+++|+|++|++|+.+|+++|.++.+++++|.+.|.++|+
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6999999996 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeecceeecCCC-------------CCCCCCCcchhchhhhcCC
Q 009332 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGRLSGQRLENNRAGE 183 (537)
Q Consensus 119 ~l~i~~~~~~~r~s~--~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~-------------~~~yG~ls~~~l~~~~~g~ 183 (537)
+|||. +|.++++++ |++.+++++++|.++|++|+++..++||+.+ |+.||. .++....++
T Consensus 84 ~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~----~v~~~~~~~ 158 (500)
T 2d5b_A 84 LLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGR----PVERRKEGN 158 (500)
T ss_dssp HTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCS----BCEEEEEEE
T ss_pred HhCCc-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCC----eeeEEecCc
Confidence 99997 688889886 9999999999999999999998888888764 222332 111111000
Q ss_pred C-ccc--------cccccCCccceecccc--------cCC----CCcc---ccCCCCCCC--------------------
Q 009332 184 R-VAV--------DSRKRNPADFALWKAA--------KAG----EPSW---DSPWGPGRP-------------------- 219 (537)
Q Consensus 184 ~-~~~--------~~~k~~~~df~lwk~~--------~~g----~~~w---~~~wG~g~P-------------------- 219 (537)
. +.+ +..+.++ +|..|+.. ++| .++| +.+||.++|
T Consensus 159 wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~ 237 (500)
T 2d5b_A 159 YFFRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSA 237 (500)
T ss_dssp EEECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHT
T ss_pred eEEEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHH
Confidence 0 000 0112233 55444221 122 2344 778999999
Q ss_pred -chhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHH
Q 009332 220 -GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQIT 297 (537)
Q Consensus 220 -gWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll 297 (537)
|||++|+ ..++| +.|||++|+|++||||++|++++.+++ .++++.|+|||||++ +|+|||||+||+|+|.|++
T Consensus 238 ~g~~~~~~--~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~g-~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i 312 (500)
T 2d5b_A 238 LDYPEGEA--YRTFW--PHAWHLIGKDILKPHAVFWPTMLKAAG-IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALL 312 (500)
T ss_dssp TTTTTCHH--HHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHHT-CCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHH
T ss_pred cCCCCCch--HHHcC--CCeEEEEeechhhhHHHHHHHHHHHcC-CCCCcEEEECceEEeCCCCcccccCCCCCCHHHHH
Confidence 7888886 44566 569999999999999999999999875 445666788999999 9999999999999999999
Q ss_pred HhcChhhHHHHHhh-cCCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHH
Q 009332 298 ERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFH 374 (537)
Q Consensus 298 ~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~ 374 (537)
++||+|++|||+++ .+++++++||++.+.++.+. ...+.+.+.|+.+.+.+..........+++++..+.++.+.+.
T Consensus 313 ~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~ 392 (500)
T 2d5b_A 313 EKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLR 392 (500)
T ss_dssp HHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGGGHHHHHH
T ss_pred HhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999998 69999999999999887653 1123333344333322111111111124678888889999999
Q ss_pred HHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHH-HHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHH
Q 009332 375 ARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI-ESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQL 450 (537)
Q Consensus 375 ~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~ 450 (537)
++| ++++++.|+.. |++|++.+|+|++.+++|...+....+. ..+..+...|+.++.+| .|+|. .++++|+.+
T Consensus 393 ~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~-~aeei~~~l 467 (500)
T 2d5b_A 393 PLV-RELKFHVALEE-AMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPD-KMAELRRAL 467 (500)
T ss_dssp HHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHT
T ss_pred HHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccH-HHHHHHHHc
Confidence 999 99999999999 9999999999999999885432211222 23444555666666666 46665 455555544
No 7
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=4.3e-60 Score=517.65 Aligned_cols=404 Identities=17% Similarity=0.170 Sum_probs=311.6
Q ss_pred cceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009332 39 KVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 39 ~v~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
.-.+|+|+|.|| |.||||||++++++|+++||+|++||+|.||+|+|+||.||+.+|+++|++|++++++|.+.|.++
T Consensus 8 ~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~ 87 (542)
T 3u1f_A 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKC 87 (542)
T ss_dssp CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 346788887777 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCCCCCCcchhchhhhcC
Q 009332 117 MADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRLSGQRLENNRAG 182 (537)
Q Consensus 117 l~~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~yG~ls~~~l~~~~~g 182 (537)
+++|||+ .|.+.||+ +|.+.++++|.+|.++|++|++.+.|+||+++ |+.||...+. ...+|
T Consensus 88 ~~~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~---~~~sg 163 (542)
T 3u1f_A 88 FEQMDYS-IDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKV---SLESG 163 (542)
T ss_dssp HHHHTCC-CSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEE---ETTTC
T ss_pred HHHhCCc-cCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccc---cCCCC
Confidence 9999998 58888877 79999999999999999999999999999875 3445532111 11234
Q ss_pred CCccccc------------------cccCCccceecccc------------cCCCCcc----ccCCCCCCCc--------
Q 009332 183 ERVAVDS------------------RKRNPADFALWKAA------------KAGEPSW----DSPWGPGRPG-------- 220 (537)
Q Consensus 183 ~~~~~~~------------------~k~~~~df~lwk~~------------~~g~~~w----~~~wG~g~Pg-------- 220 (537)
..++... .+.++ ++..|... .+..++| ...||++.|+
T Consensus 164 ~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~v 242 (542)
T 3u1f_A 164 HVVTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYV 242 (542)
T ss_dssp CBEEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECH
T ss_pred CcceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeee
Confidence 3332110 01122 33332211 1222333 3459999997
Q ss_pred hhhhhHH-HH-Hh------------------hcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCC
Q 009332 221 WHIECSA-MS-AH------------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNN 280 (537)
Q Consensus 221 Whiecs~-m~-~~------------------~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G 280 (537)
|+.+... ++ .. ....+.|+|++|+|++|||+++|+|++.+.+ .++++.++|||||+.+|
T Consensus 243 w~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g-~~~~~~v~~hg~l~~~G 321 (542)
T 3u1f_A 243 WLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAG-LPLPKKIVAHGWWTKDR 321 (542)
T ss_dssp HHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHT-CCCCSCEEEECCCEETT
T ss_pred eeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhc-ccccceeccccceecCC
Confidence 7654322 11 11 1234789999999999999999999998875 45566778899999999
Q ss_pred ccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC----C
Q 009332 281 EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH----G 353 (537)
Q Consensus 281 ~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~----~ 353 (537)
+|||||+||+|+|.|++++||+|++|||+++. ++++|++||++.+.+..|. +.+|+|.+.|+.......... .
T Consensus 322 ~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~ 401 (542)
T 3u1f_A 322 KKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPA 401 (542)
T ss_dssp BCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCC
T ss_pred ceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccc
Confidence 99999999999999999999999999999985 8999999999999887664 345666666665543322111 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHHH-HHHHHHHHHHHHHH
Q 009332 354 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI-ESLRKIENEVKEVL 432 (537)
Q Consensus 354 ~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~~l 432 (537)
...+.|+++++.+.++.+.+.++| ++++++.|+.. |++|++.+|+|++..+||...+.++.++ ..+..+.++|+.++
T Consensus 402 ~~~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~ 479 (542)
T 3u1f_A 402 AYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIA-VFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTT 479 (542)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 123346889999999999999999 99999999999 9999999999999999987643333333 33445556677666
Q ss_pred hhc-ccCCCCChHHHHHHHH
Q 009332 433 RIL-GLLPPGAYSEVLQQLK 451 (537)
Q Consensus 433 ~vL-Gi~~~~~~~~~~~~~~ 451 (537)
.+| .|+|. .++++|++|+
T Consensus 480 ~ll~P~~P~-~aeei~~~Lg 498 (542)
T 3u1f_A 480 LLLSPILPR-KSVVIFDMLG 498 (542)
T ss_dssp HHHTTTSHH-HHHHHHHHHT
T ss_pred HHHHhHhHH-HHHHHHHHCC
Confidence 666 47777 6777777663
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=2.5e-59 Score=523.60 Aligned_cols=406 Identities=16% Similarity=0.141 Sum_probs=311.6
Q ss_pred EEEeCCCCCCCCCcchhhH-HHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009332 42 MYVCGVTAYDLSHLGHARA-AVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~-~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
|.++.|+|||.+||||+++ ++.+|+++||+|++||+|.|++|+|+||++|+.+|+++|++|++++++|.+.|.++|++|
T Consensus 6 itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~l 85 (722)
T 1rqg_A 6 VTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRA 85 (722)
T ss_dssp EEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3444567779999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCCCCC--------------Cc
Q 009332 121 QCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGR--------------LS 172 (537)
Q Consensus 121 ~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~yG~--------------ls 172 (537)
||+ +|.+.|++ +|.+.++++|.+|+++|++|++.+.+|||+.+ ||.||. ++
T Consensus 86 gis-~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~ 164 (722)
T 1rqg_A 86 KIS-FDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLT 164 (722)
T ss_dssp TCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCC
T ss_pred CCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccC
Confidence 997 68888988 59999999999999999999999999999975 565553 11
Q ss_pred chhchh---hhcCCCccccc----------cccCCccce---ecccc---------cCCCC----ccccCCCCCCC----
Q 009332 173 GQRLEN---NRAGERVAVDS----------RKRNPADFA---LWKAA---------KAGEP----SWDSPWGPGRP---- 219 (537)
Q Consensus 173 ~~~l~~---~~~g~~~~~~~----------~k~~~~df~---lwk~~---------~~g~~----~w~~~wG~g~P---- 219 (537)
+.++.. .++|.+++... ++....++. .|... +.|.. +++.+||.++|
T Consensus 165 ~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~ 244 (722)
T 1rqg_A 165 PEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE 244 (722)
T ss_dssp TTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS
T ss_pred hhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCcccc
Confidence 112211 12344443211 110000110 14332 24443 45889999999
Q ss_pred chh-----------hhhHHHHH-------------hhcC--C--CeeEEEecccCcCccchhhHHHhhhcc---------
Q 009332 220 GWH-----------IECSAMSA-------------HYLS--S--KFDIHGGGIDLIFPHHENEIAQSCAAC--------- 262 (537)
Q Consensus 220 gWh-----------iecs~m~~-------------~~~g--~--~~dih~~G~Dl~f~H~~~~~a~~~a~~--------- 262 (537)
||+ ++|.+++. .||+ . ..++|++|+|++|||..+|||++++++
T Consensus 245 g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~r 324 (722)
T 1rqg_A 245 DMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEA 324 (722)
T ss_dssp SSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCB
T ss_pred CCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCccccccc
Confidence 565 44544331 3565 3 256999999999999999999999875
Q ss_pred CCCCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHH
Q 009332 263 QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTL 339 (537)
Q Consensus 263 ~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--l~~l~~~~ 339 (537)
+.++++.++|||||+++|+|||||+||+|+|.|++++||+|++|||+++. ++++|++||++.+.+..|. ++++.+++
T Consensus 325 g~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~ 404 (722)
T 1rqg_A 325 EWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFV 404 (722)
T ss_dssp CBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHH
T ss_pred CCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 33444777999999999999999999999999999999999999999997 9999999999999987663 33444444
Q ss_pred HHHHHhcCccccC-----CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhh
Q 009332 340 QDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 414 (537)
Q Consensus 340 ~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~ 414 (537)
+|+.+++.+.... ......+++++..+..+...+.++| ++|+++.|+.. |++|++.+|+|++..+||...+.+
T Consensus 405 ~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~-i~~~~~~~n~Yi~~~kpw~~~k~~ 482 (722)
T 1rqg_A 405 HRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKR-VMSLASFGNRYFDHKQPWKTAKED 482 (722)
T ss_dssp HHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHTTCHHHHTTTC
T ss_pred HHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCC
Confidence 4544443322110 1112346788999999999999999 99999999999 999999999999999998653222
Q ss_pred HHHH-HHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHH
Q 009332 415 LSLI-ESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQLK 451 (537)
Q Consensus 415 ~~~~-~~l~~~~~~l~~~l~vL-Gi~~~~~~~~~~~~~~ 451 (537)
..+. ..+..+.+.|+.++.+| .|+|. .++++|++++
T Consensus 483 ~~~~~~vl~~l~~~l~~l~~lL~P~~P~-~aeei~~~L~ 520 (722)
T 1rqg_A 483 KVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLLN 520 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHcC
Confidence 2222 33445566777777777 48887 7888888875
No 9
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=3.3e-59 Score=509.09 Aligned_cols=412 Identities=20% Similarity=0.202 Sum_probs=298.6
Q ss_pred cccccCCCCcceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHH
Q 009332 30 ELFTPIVPGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSN 107 (537)
Q Consensus 30 ~~f~p~~~~~v~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~ 107 (537)
.++.|..-++.++|+|||+|| |++||||+|++|++|+++|++|+.||+|.+++|+||+|+||+.+|.+.|.+|+++++
T Consensus 15 ~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~ 94 (536)
T 4dlp_A 15 QTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLAD 94 (536)
T ss_dssp ---------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHH
T ss_pred cccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHH
Confidence 345554434568999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchh-------
Q 009332 108 RYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN------- 178 (537)
Q Consensus 108 ~~~~~~~~~l~~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~------- 178 (537)
+|.+.|.++|++|||. +|.+.+++ +|++.+++++++|.++|++|++++.+|||+++...+. ..++.+
T Consensus 95 ~~~~~~~~~l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~---~~~~~~~~~g~~c 170 (536)
T 4dlp_A 95 RNTSAFRRMAEVLNSS-NDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYG---EEETEVRADGVRY 170 (536)
T ss_dssp HHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEEC---GGGCEECTTSCEE
T ss_pred HHHHHHHHHHHHcCCC-CCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccC---HHHhhcCCCCCcc
Confidence 9999999999999998 57888888 4999999999999999999999999999987532111 111100
Q ss_pred hhcCCCcccc----------c--------cccCCcccee----------ccc--ccCCCCccc-cCCCCCCCc-------
Q 009332 179 NRAGERVAVD----------S--------RKRNPADFAL----------WKA--AKAGEPSWD-SPWGPGRPG------- 220 (537)
Q Consensus 179 ~~~g~~~~~~----------~--------~k~~~~df~l----------wk~--~~~g~~~w~-~~wG~g~Pg------- 220 (537)
..+|..++.. . .+.+| +|.. |-. .++-.+++. ..||+++|+
T Consensus 171 ~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~y 249 (536)
T 4dlp_A 171 GPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMY 249 (536)
T ss_dssp CTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEEC
T ss_pred cCCCCcceEEeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceE
Confidence 0123322110 0 01121 2221 111 112234553 579999995
Q ss_pred -hhhhhHHHHHh--h--------cCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCC
Q 009332 221 -WHIECSAMSAH--Y--------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN 289 (537)
Q Consensus 221 -Whiecs~m~~~--~--------~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn 289 (537)
|+......... + -.++.|+|+.|+|+++||+.+|++++.+++..+|.++ ++||||+++|+|||||+||
T Consensus 250 vWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v-~~hg~v~~~G~KMSKS~GN 328 (536)
T 4dlp_A 250 VWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRV-FAHGFLFNRGEKMSKSVGN 328 (536)
T ss_dssp HHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCE-EEECCEEC-----------
T ss_pred EeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEE-EeeeeEeeCCceecccCCC
Confidence 87765443211 0 0136789999999999999999999998876667777 5569999999999999999
Q ss_pred cccHhHHHHhcChhhHHHHHhh-cCCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCCCCCChH
Q 009332 290 FFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPA 361 (537)
Q Consensus 290 ~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~~~~ 361 (537)
+|+|.|++++||+|++|||+++ .++.++++||++.+.+..|. +.+++|+++|+.+++.+.... ....+.|++
T Consensus 329 vi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ 408 (536)
T 4dlp_A 329 VIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKA 408 (536)
T ss_dssp -CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHH
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHH
Confidence 9999999999999999999999 59999999999999887652 445666666665554322111 112335688
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhh-HHHHHHHHHHHHHHHHHHhhcc-cCC
Q 009332 362 AEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLP 439 (537)
Q Consensus 362 l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~l~vLG-i~~ 439 (537)
++..+.++.+.+.++| ++++++.|+.. |++|+..+|+|++.+++|...+.. ..+...+..+..+|+.++.+|. |+|
T Consensus 409 ll~~l~~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P 486 (536)
T 4dlp_A 409 ILDQADAALETARKAM-DDQALHLALGA-IFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIP 486 (536)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999 89999999999 999999999999999988653322 2233445666777787888885 666
Q ss_pred CCChHHHHHHH
Q 009332 440 PGAYSEVLQQL 450 (537)
Q Consensus 440 ~~~~~~~~~~~ 450 (537)
. .++++++++
T Consensus 487 ~-~aeei~~~L 496 (536)
T 4dlp_A 487 Q-SAEKLLDIL 496 (536)
T ss_dssp H-HHHHHHHTT
T ss_pred H-HHHHHHHHc
Confidence 5 566666654
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=2.8e-59 Score=508.91 Aligned_cols=406 Identities=18% Similarity=0.182 Sum_probs=299.3
Q ss_pred CCcceEEEeC--CCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009332 37 PGKVGMYVCG--VTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (537)
Q Consensus 37 ~~~v~~y~~g--Pt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~ 114 (537)
+|+..+|+++ |+|+|++||||+|+++++|+++|+++++||+|.+++|+|++|+||+.+|+++|.+|.+++++|.+.|.
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 88 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQ 88 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4455555555 55669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCccchhh--hHHHHHHHHHHHHHCCceeeeecceeecCCC--CCCCCCCcch---hchhhhcCCCccc
Q 009332 115 VDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SPNYGRLSGQ---RLENNRAGERVAV 187 (537)
Q Consensus 115 ~~l~~l~i~~~~~~~r~s~--~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--~~~yG~ls~~---~l~~~~~g~~~~~ 187 (537)
+++++|||. +|.+.|+++ |++.+++++++|.++|++|++++.||||+.+ +..++.+... ......+|.+++.
T Consensus 89 ~~~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~ 167 (524)
T 2x1l_A 89 RLQEKLNIS-FDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTW 167 (524)
T ss_dssp HHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEE
T ss_pred HHHHHcCCc-CCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceE
Confidence 999999997 688899986 9999999999999999999999999999875 2222221000 0000012222210
Q ss_pred ----------ccc--------ccCCcccee----------c--ccccCCCCccc-cCCCCCCCc--------hhhh----
Q 009332 188 ----------DSR--------KRNPADFAL----------W--KAAKAGEPSWD-SPWGPGRPG--------WHIE---- 224 (537)
Q Consensus 188 ----------~~~--------k~~~~df~l----------w--k~~~~g~~~w~-~~wG~g~Pg--------Whie---- 224 (537)
+.+ +.++ ++.. | ...++-.++|. .+||.++|+ |+..
T Consensus 168 ~~~~qwF~~l~~~~~~l~~~~~~~~-~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~ 246 (524)
T 2x1l_A 168 TEEQTYFFRLSAYTDRLLALYEEHP-EFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNY 246 (524)
T ss_dssp EEEEEEEECGGGSHHHHHHHHHHCG-GGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHH
T ss_pred EecCCeEeeHHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHH
Confidence 000 0111 1111 1 01112224444 368888873 5432
Q ss_pred ---------hHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccHhH
Q 009332 225 ---------CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 295 (537)
Q Consensus 225 ---------cs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d 295 (537)
|+.+..++| +.|||++|+|++||||++|+|++.+++..+|.++|+| |||+++|+|||||+||+|+|.|
T Consensus 247 ~~~~g~p~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~h-G~v~~~G~KMSKS~GN~v~p~d 323 (524)
T 2x1l_A 247 LTGVGFPDTESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAH-GWLLNRGEKMSKSIGNVVDPVN 323 (524)
T ss_dssp HHTTTTTCTTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEE-CCEEECSCSEETTTEESSCHHH
T ss_pred HHHcCCCCCchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEEC-cEEEeCCcccCCcCCCCCCHHH
Confidence 444555566 6899999999999999999999998866666788666 9999999999999999999999
Q ss_pred HHHhcChhhHHHHHhh-cCCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCc----ccc-CCCCCCCChHHHHHHH
Q 009332 296 ITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSP----FQE-HGKTARINPAAEDCIN 367 (537)
Q Consensus 296 ll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~~--l~~l~~~~~~~~~~l~~----~~~-~~~~~~~~~~l~~~l~ 367 (537)
++++||+|++|||+++ .+++++++||++.+.++.+. ...|.+.+.|+...+.+ ... .....+.+++++..+.
T Consensus 324 ~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~ 403 (524)
T 2x1l_A 324 LVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAAD 403 (524)
T ss_dssp HHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHH
Confidence 9999999999999999 69999999999999988764 11222333333322211 100 0111234678889999
Q ss_pred HHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhh----h-HHHHHHHHHHHHHHHHHHhhc-ccCCCC
Q 009332 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ----Q-LSLIESLRKIENEVKEVLRIL-GLLPPG 441 (537)
Q Consensus 368 ~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~l~~~l~vL-Gi~~~~ 441 (537)
++.+.+.++| ++++++.|++. |++|++.+|+|++.+++|...+. . ......+..+..+|+.++.+| .|+|.
T Consensus 404 ~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~- 480 (524)
T 2x1l_A 404 ALLERVREHF-DVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPE- 480 (524)
T ss_dssp THHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHH-
T ss_pred HHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhH-
Confidence 9999999999 99999999999 99999999999999998754221 1 112223445566777777777 47776
Q ss_pred ChHHHHHHH
Q 009332 442 AYSEVLQQL 450 (537)
Q Consensus 442 ~~~~~~~~~ 450 (537)
.++++|+++
T Consensus 481 ~aeei~~~L 489 (524)
T 2x1l_A 481 STAKLLDLL 489 (524)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 566666655
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.8e-58 Score=503.43 Aligned_cols=413 Identities=17% Similarity=0.179 Sum_probs=315.1
Q ss_pred ccccccCCC-CcceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHH
Q 009332 29 KELFTPIVP-GKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSL 105 (537)
Q Consensus 29 ~~~f~p~~~-~~v~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~ 105 (537)
-.+|.|..+ ++.++|+|+|+|| |++||||+|+++++|+++|++|++||+|.+++|+||+|+||+.+|++.|++|+++
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~ 93 (564)
T 3kfl_A 14 AQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDF 93 (564)
T ss_dssp ----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHH
T ss_pred hhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHH
Confidence 346666543 3568999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchh-----
Q 009332 106 SNRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN----- 178 (537)
Q Consensus 106 ~~~~~~~~~~~l~~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~----- 178 (537)
+++|.+.|.++|++|||. +|.+.+++ +|.+.+++++++|.++|++|++++.+|||+.+... ++..++.+
T Consensus 94 ~~~~~~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~---l~~~~~~~~~~~~ 169 (564)
T 3kfl_A 94 TTSVSSEFKQCFQEMNYD-MNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESF---LTAQNVADGVDRD 169 (564)
T ss_dssp HHHHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEE---ECGGGEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCC-CCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCC---CCHHHhccCcCCC
Confidence 999999999999999998 57788888 69999999999999999999999999999875211 11111100
Q ss_pred -------hhcCCCcccc----------c--------cccCCccceecc----------c--ccCCCCcc----ccCCCCC
Q 009332 179 -------NRAGERVAVD----------S--------RKRNPADFALWK----------A--AKAGEPSW----DSPWGPG 217 (537)
Q Consensus 179 -------~~~g~~~~~~----------~--------~k~~~~df~lwk----------~--~~~g~~~w----~~~wG~g 217 (537)
..+|..++.. . .+.++ +|..+. . .++-.+++ +..||++
T Consensus 170 g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGip 248 (564)
T 3kfl_A 170 GKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIP 248 (564)
T ss_dssp SCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCE
T ss_pred CCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCee
Confidence 0124433211 1 01122 332211 1 12223677 5689999
Q ss_pred CCc--------hhhhhHHH-H-Hhh-------------c----CCCeeEEEecccCcCccchhhHHHhhhccCCCCceEE
Q 009332 218 RPG--------WHIECSAM-S-AHY-------------L----SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (537)
Q Consensus 218 ~Pg--------Whiecs~m-~-~~~-------------~----g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~ 270 (537)
+|+ |+.+...+ + ..+ | .++.|+|+.|+|+++||..+|++++.+++..+|.++
T Consensus 249 iP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g~~~~~~v- 327 (564)
T 3kfl_A 249 VPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPERL- 327 (564)
T ss_dssp ETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCE-
T ss_pred cCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCCCCCCcEE-
Confidence 996 87765332 1 111 1 236689999999999999999999998876666666
Q ss_pred EEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhh-cCCCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHhcC
Q 009332 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALS 347 (537)
Q Consensus 271 ~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~--~l~~l~~~~~~~~~~l~ 347 (537)
++||||+.+|+|||||+||+|+|.|++++||+|++|||+++ .++.+|++||++.+.+..| .+.+|+|+++|+.+++.
T Consensus 328 ~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~ 407 (564)
T 3kfl_A 328 VSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKI 407 (564)
T ss_dssp EEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTT
T ss_pred EEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999999999 6999999999999998765 46688888888887765
Q ss_pred ccccC----CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchhhhHHH-HHHHH
Q 009332 348 PFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL-IESLR 422 (537)
Q Consensus 348 ~~~~~----~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~~~~~~-~~~l~ 422 (537)
..... ......+++++..+..+.+.+.++| ++++++.|+.. |++|+..+|+|++.++||.+.+.+..+ ...+.
T Consensus 408 ~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~ 485 (564)
T 3kfl_A 408 NVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIA-IFDVLRSLNAYVTENAPWKLVKMDTARLGTVLY 485 (564)
T ss_dssp STTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHH
T ss_pred hcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHH
Confidence 22110 0112346889999999999999999 89999999999 999999999999999988653322222 23345
Q ss_pred HHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009332 423 KIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 423 ~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
.+.++|+.++.+|. |+|. .++++++++
T Consensus 486 ~l~~~l~~l~~lL~P~~P~-~ae~i~~~L 513 (564)
T 3kfl_A 486 VTMEGLRICTMFLQPVMPQ-KAKEIMDAL 513 (564)
T ss_dssp HHHHHHHHHHHHHTTTSHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhH-HHHHHHHHc
Confidence 55666776777775 6665 556666554
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=6.9e-58 Score=501.17 Aligned_cols=413 Identities=15% Similarity=0.130 Sum_probs=312.5
Q ss_pred ccCCCCcceEEEeCCCCC--CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHH
Q 009332 33 TPIVPGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110 (537)
Q Consensus 33 ~p~~~~~v~~y~~gPt~y--g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~ 110 (537)
.|..++++++|+|+|+|| |++||||+|+++++|+++|+++++||+|.|++|+||+|++|+.+|.+.|+++++++++|.
T Consensus 11 ~~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 90 (560)
T 3h99_A 11 GSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMS 90 (560)
T ss_dssp ------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHH
Confidence 456789999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC------------CCCCCCC-----
Q 009332 111 QEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL----- 171 (537)
Q Consensus 111 ~~~~~~l~~l~i~~~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------------~~~yG~l----- 171 (537)
+.|.++|++|||. +|.+.+++ +|.+.+++++++|.++|++|++++.+|||+.+ ||.||..
T Consensus 91 ~~~~~~~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd 169 (560)
T 3h99_A 91 QEHQTDFAGFNIS-YDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGD 169 (560)
T ss_dssp HHHHHHHHHTTCC-CSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETT
T ss_pred HHHHHHHHHcCCC-CCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccc
Confidence 9999999999998 57777776 78899999999999999999999999999874 6766632
Q ss_pred ---------cchhchhh---hcCCCccccccc---cCCccce---------------------eccc--ccCCCCcccc-
Q 009332 172 ---------SGQRLENN---RAGERVAVDSRK---RNPADFA---------------------LWKA--AKAGEPSWDS- 212 (537)
Q Consensus 172 ---------s~~~l~~~---~~g~~~~~~~~k---~~~~df~---------------------lwk~--~~~g~~~w~~- 212 (537)
.+.++.+. .+|.++.....+ -.-.+|. -|.. .++-.++++.
T Consensus 170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~ 249 (560)
T 3h99_A 170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAP 249 (560)
T ss_dssp BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESS
T ss_pred hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCC
Confidence 22222211 124433211000 0000010 0111 1122356666
Q ss_pred CCCCCCC--------chhhhhHHHHH----------------hhcCCC---eeEEEecccCcCccchhhHHHhhhccCCC
Q 009332 213 PWGPGRP--------GWHIECSAMSA----------------HYLSSK---FDIHGGGIDLIFPHHENEIAQSCAACQDS 265 (537)
Q Consensus 213 ~wG~g~P--------gWhiecs~m~~----------------~~~g~~---~dih~~G~Dl~f~H~~~~~a~~~a~~~~~ 265 (537)
.||.++| .|+.+...+.. .+|... ..+|++|+|+++||+.+|+|++.+++..+
T Consensus 250 ~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~~ 329 (560)
T 3h99_A 250 YFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRK 329 (560)
T ss_dssp CSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCC
T ss_pred cCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCCC
Confidence 6899999 48766543211 123211 22999999999999999999999987766
Q ss_pred CceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCC-CCcccCHHHHHHHHH--HHHHHHHHHHH
Q 009332 266 NVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASD--AVFYIYQTLQD 341 (537)
Q Consensus 266 ~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~~~~--~l~~l~~~~~~ 341 (537)
|.++ +.||||+++|+|||||+||+|+|.|++++||+|++||||++. +.. ++++|+++.+.+..+ .+.+++|.++|
T Consensus 330 p~~v-~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R 408 (560)
T 3h99_A 330 PSNL-FVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASR 408 (560)
T ss_dssp CSEE-EEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHT
T ss_pred CcEE-EEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 556999999999999999999999999999999999999997 556 899999999987543 34456666666
Q ss_pred HHHhcCccccC-CCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCchh---hhHHH
Q 009332 342 CEVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ---QQLSL 417 (537)
Q Consensus 342 ~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~~---~~~~~ 417 (537)
+.+++.+.... ......+++++..+..+.+.+.++| ++++++.|+.. |++|+..+|+|++..++|...+ ....+
T Consensus 409 ~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~~ 486 (560)
T 3h99_A 409 NAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMALADLANRYVDEQAPWVVAKQEGRDADL 486 (560)
T ss_dssp THHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTSTTCHHHH
T ss_pred HHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCcCcHHHH
Confidence 66555432211 1123468999999999999999999 89999999999 9999999999999999885322 12233
Q ss_pred HHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009332 418 IESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 418 ~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
...+..+..+|+.++.+|. |+|. .++++|+++
T Consensus 487 ~~~~~~~~~~l~~~~~lL~P~~P~-~aeei~~~L 519 (560)
T 3h99_A 487 QAICSMGINLFRVLMTYLKPVLPK-LTERAEAFL 519 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHc
Confidence 4445566788888888886 7765 566666554
No 13
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=6.8e-54 Score=470.29 Aligned_cols=382 Identities=13% Similarity=0.061 Sum_probs=290.3
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHH---HH-----------------------
Q 009332 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK---II----------------------- 92 (537)
Q Consensus 39 ~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~k---i~----------------------- 92 (537)
+|.||+|||||||++||||+|++|++|+|+|+|++.||+|.++++++|+|.. ++
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 8999999999999999999999999999999999999999999999999732 22
Q ss_pred -H-------------------HHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhh--HHHHHHHHHHHHHCCc
Q 009332 93 -R-------------------RANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDC 150 (537)
Q Consensus 93 -~-------------------~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~--~~~~~~~i~~L~~~G~ 150 (537)
. ++.+.|. .+++++.+.+.|.++|++|||. +|.++++|++ .+.+++++++|.++|+
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~-~D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNAR-YDLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCC-CSEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCE-eEEeccCCcccccchHHHHHHHHHHCCC
Confidence 1 1134555 4899999999999999999998 5889999977 7899999999999999
Q ss_pred ee-----eeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccc--eecc-------cccCCCCccccCCCC
Q 009332 151 AY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF--ALWK-------AAKAGEPSWDSPWGP 216 (537)
Q Consensus 151 ay-----~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df--~lwk-------~~~~g~~~w~~~wG~ 216 (537)
+| +.+|.+||++..+.....+....+. -..|... | ...|+ ++|| ..+ ..|.+|||
T Consensus 262 ~y~~~~g~~~G~~~~~~~~~g~~~~l~~~vi~-ksdG~~~----Y--~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~- 330 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDASPVIPGLEDPFFVLL-RSNGTAT----Y--YAKDIAFQFWKMGILEGLRFR---PYENPYYP- 330 (592)
T ss_dssp EECCSSSTTTTCEEEECTTTSCSCSCCEEEEE-CTTSCBC----H--HHHHHHHHHHHTTSSCCCEEE---ECCCSSCT-
T ss_pred cccCcccCcCCCEEEechhcCCCCCCCceEEE-ecCCceE----E--ecchHHHHHHHhhhhhhhhhh---hhhcCcch-
Confidence 99 7789898876543211111111110 0112211 0 12355 6785 222 24788998
Q ss_pred CCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhccCCCC-ceEEEEe--eeeeeCCccccccCCCcccH
Q 009332 217 GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHN--GHVTNNNEKMSKSLGNFFTI 293 (537)
Q Consensus 217 g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~-~~~~~h~--g~v~~~G~KMSKS~Gn~i~~ 293 (537)
+|+||++|+.|....++..++||+++.++-|+++ .+...++ |.++ ++.|.|. |||+++|+|||||+||+|++
T Consensus 331 -r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~---~~~~~al-G~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l 405 (592)
T 1iq0_A 331 -GLRTSAPEGEAYTPKAEETINVVDVRQSHPQALV---RAALALA-GYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSV 405 (592)
T ss_dssp -TCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHH---HHHHHHT-TCHHHHTTEEEEEECCEEETTBCSCC----CCBH
T ss_pred -hhcccccCcccCCCCCCEEEEEEeccHHHHHHHH---HHHHHHc-CCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCH
Confidence 7999999999976566667778877433322222 1222333 3334 3445666 77999999999999999999
Q ss_pred hHHHHh-------------------------cChhhHHHHHhhcCCCCCcccCHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 009332 294 RQITER-------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALS 347 (537)
Q Consensus 294 ~dll~~-------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~-~l~~l~~~~~~~~~~l~ 347 (537)
+|++++ +|++++|||+|+.+++++++||++.+.+..+ ...+++|+++|++++++
T Consensus 406 ~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~ 485 (592)
T 1iq0_A 406 DEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILR 485 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999998 9999999999999999999999999998876 56699999999999987
Q ss_pred ccccCCC-----CCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhh-------cccCch-hhh
Q 009332 348 PFQEHGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNML-------KKKQPK-QQQ 414 (537)
Q Consensus 348 ~~~~~~~-----~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~-------~~~~~~-~~~ 414 (537)
++...+. ..+.+..|+..+.++++.+.+++ ++++++.++.. |++|++.+|+||+.+ +++... ...
T Consensus 486 k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~~~~y-l~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~ 563 (592)
T 1iq0_A 486 KAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EERTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGLR 563 (592)
T ss_dssp HHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTHH
T ss_pred hhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHHHHHHhccccccCCceeCCCHHHH
Confidence 7532111 11224567888889999999999 89986666666 999999999999999 544332 224
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC
Q 009332 415 LSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 415 ~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
..|+.++.++..+|.++|.+|||.++
T Consensus 564 ~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 564 ELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 56899999999999999999999875
No 14
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.7e-51 Score=452.63 Aligned_cols=383 Identities=17% Similarity=0.143 Sum_probs=290.9
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHH-------------------------
Q 009332 36 VPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK------------------------- 90 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~k------------------------- 90 (537)
.+++|.||+|||||+|++||||+|++|++|+|+|+|++.||+|.++++++|+|..
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 4679999999999999999999999999999999999999999999999998543
Q ss_pred --------------HHHHHHH-------------------cC-CChHHHHHHHHHHHHHHHHHcCCCCCCCccchhhh--
Q 009332 91 --------------IIRRAND-------------------LG-ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH-- 134 (537)
Q Consensus 91 --------------i~~~a~~-------------------~g-~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~-- 134 (537)
+...+++ .| ..|+++++.+.+.|.++|++|||. +|.++++|++
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~-~D~~~~es~~~~ 275 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVK-YDLLVWESDIVR 275 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCC-CSEEEEHHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCc-cccccCcCcccc
Confidence 2222222 23 556999999999999999999998 5999999987
Q ss_pred HHHHHHHHHHHHHCCcee-----eeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccc--eecc------
Q 009332 135 MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF--ALWK------ 201 (537)
Q Consensus 135 ~~~~~~~i~~L~~~G~ay-----~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df--~lwk------ 201 (537)
.+.+++++++|.++|++| +.+|.+||++..+.....+....+. -.+|... | .+.|+ ++||
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~~~~v~~-ksdG~~~----Y--~~~Diay~~~K~~ll~~ 348 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPILVLR-RSDGTAT----Y--TGKDIAYHLWKFGKIDV 348 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSCCEEEEE-CTTSCBC----H--HHHHHHHHHHHTTCSCC
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCccccCceEEE-ecCCccc----c--chhhHHHHHHHhhcccc
Confidence 789999999999999999 7789999987654211111111110 1112110 0 12465 5775
Q ss_pred --cccCC-CCcc-ccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhccCCCC-ceEEEEe--e
Q 009332 202 --AAKAG-EPSW-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHN--G 274 (537)
Q Consensus 202 --~~~~g-~~~w-~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~-~~~~~h~--g 274 (537)
..++. .+.| .+|||.|+|| +...++..++||++|.|+-|.+. .+...++ |.++ ++.|.|. |
T Consensus 349 ~fr~~~~~~~~~~~~~wG~~~Pg--------~~~~~d~~IyV~g~~q~~~~~~l---~~~l~~l-G~~~~~~~~~h~~~g 416 (629)
T 2zue_A 349 DLLYKEWDSTTWTTAPDGKSMPN--------KFGNANIVINVIGAEQKHPQLAI---KYALQLL-GFEDAAANLYHLAYE 416 (629)
T ss_dssp CCEEEECSSSCEEEEEEEEECTT--------SSCCCSEEEEEEEGGGHHHHHHH---HHHHHHT-TCHHHHHTEEEEEEC
T ss_pred cccCCcccccccccCCCCCCCCC--------ccCCCCcEEEEEeCcHhhHHHHH---HHHHHHc-CCCCCCCeEEEEEee
Confidence 33322 2345 4699999998 11234556778887666322221 2222333 3444 4456666 8
Q ss_pred eeeeCCccccccCC--CcccHhHHHHh---------------------------cChhhHHHHHhhcCCCCCcccCHHHH
Q 009332 275 HVTNNNEKMSKSLG--NFFTIRQITER---------------------------YHPLALRHFLISAHYRSPLNYSVLQL 325 (537)
Q Consensus 275 ~v~~~G~KMSKS~G--n~i~~~dll~~---------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l 325 (537)
||+++|+|||||+| |+|+++||+++ +|++++||++|+.+++++++||++.+
T Consensus 417 ~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~ 496 (629)
T 2zue_A 417 HVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDV 496 (629)
T ss_dssp CEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHH
T ss_pred eEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHH
Confidence 89999999999999 99999999998 99999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHhcCccccCC---------------CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHH
Q 009332 326 DSASD-AVFYIYQTLQDCEVALSPFQEHG---------------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 389 (537)
Q Consensus 326 ~~~~~-~l~~l~~~~~~~~~~l~~~~~~~---------------~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~ 389 (537)
.+..+ ...+++|+++|++++++++...+ ...+.+..|+..+.++++.+.+++ ++++ |+.++.
T Consensus 497 ~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~-p~~l~~ 574 (629)
T 2zue_A 497 LNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAG-KDVK-PHLIAW 574 (629)
T ss_dssp SCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTC-THHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhCC-HHHHHH
Confidence 88765 45599999999999987653211 012234568888999999999999 8887 555556
Q ss_pred HHHHHHHHHHHHHhhhcccCch-hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009332 390 AFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 390 ~L~~l~~~~N~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
||++|++.+|+||+.++++... .....|+.++.++..+|.++|.+|||.++
T Consensus 575 yl~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 575 FANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 6999999999999999887542 23457899999999999999999999875
No 15
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=5.9e-49 Score=429.38 Aligned_cols=361 Identities=12% Similarity=0.059 Sum_probs=285.2
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhh---------------------------
Q 009332 36 VPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD--------------------------- 88 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d--------------------------- 88 (537)
.+++|.|++|||||+|++||||+|++|+||+|+|+|++.||+|.++++++|+|
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 46799999999999999999999999999999999999999999999999942
Q ss_pred ---------------------HHHHHHHHH------cCCC-----hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhH-
Q 009332 89 ---------------------DKIIRRAND------LGEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM- 135 (537)
Q Consensus 89 ---------------------~ki~~~a~~------~g~~-----~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~- 135 (537)
++|+.+|++ .|.+ |+.+++.+.+.|.++|++|||.+ |.++++|+|+
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~ 299 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSK 299 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-eeecCcchhhh
Confidence 556666766 4766 78999999999999999999985 9999999887
Q ss_pred HHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCC
Q 009332 136 EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWG 215 (537)
Q Consensus 136 ~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG 215 (537)
+.+.++++.|.++|++|+.+|.+||++..+ |. +++ +.++-| ++|.++|.+.
T Consensus 300 ~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~---g~----~~d------------------~~v~~K--sDG~~~Y~t~-- 350 (607)
T 1f7u_A 300 ESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NK----KLG------------------KAIVQK--SDGTTLYLTR-- 350 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CT----TTC------------------EEEEEC--TTSCCCHHHH--
T ss_pred hHHHHHHHHHHhCCCEEEECCcEEEEeccc---CC----CCC------------------ceeEec--cCCCcCCCCC--
Confidence 789999999999999999999999988754 32 110 111111 1222222110
Q ss_pred CCCCchhhhhHHHH--HhhcCCCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeeeCCccccccCCCcccH
Q 009332 216 PGRPGWHIECSAMS--AHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTI 293 (537)
Q Consensus 216 ~g~PgWhiecs~m~--~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~ 293 (537)
-+++.... ...++..++||++|.|+.|+++ .+...+++ .+++++|.|.+|.+++ |||||+||+|++
T Consensus 351 ------Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~---~~~~~~lG-~~~~~~~~Hv~fg~v~--kMSkR~G~~v~L 418 (607)
T 1f7u_A 351 ------DVGAAMDRYEKYHFDKMIYVIASQQDLHAAQF---FEILKQMG-FEWAKDLQHVNFGMVQ--GMSTRKGTVVFL 418 (607)
T ss_dssp ------HHHHHHHHHHHHCCSEEEEECCGGGHHHHHHH---HHHHHHTT-CGGGGGEEEECCCCEE--SCCGGGTCCCBH
T ss_pred ------cHHHHHHHHhhcCCCcEEEEEcChHhhHHHHH---HHHHHHcC-CCcCcEEEEecccccc--cccCCCCCcccH
Confidence 01111000 1135567889999988777665 23333443 4567779999997776 699999999999
Q ss_pred hHHHHhcC----------h------------------hhHHHHHhhcCCCCCcccCHHHHHHHHHHH-HHHHHHHHHHHH
Q 009332 294 RQITERYH----------P------------------LALRHFLISAHYRSPLNYSVLQLDSASDAV-FYIYQTLQDCEV 344 (537)
Q Consensus 294 ~dll~~~~----------~------------------d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l-~~l~~~~~~~~~ 344 (537)
+||++++. + .++||++|+.+++++++||++.+.++.+.. .|++|+++|+++
T Consensus 419 ~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~S 498 (607)
T 1f7u_A 419 DNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRS 498 (607)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999873 3 489999999999999999999999887644 599999999999
Q ss_pred hcCcccc-C-------C---CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCch-h
Q 009332 345 ALSPFQE-H-------G---KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-Q 412 (537)
Q Consensus 345 ~l~~~~~-~-------~---~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~-~ 412 (537)
++++... . . ..++.+..|+..+.++++.+.+++ ++++ |+.++.||++|++.+|+||+.++++... .
T Consensus 499 Ilrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~-P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~~ 576 (607)
T 1f7u_A 499 VERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHE-PTTVVTYLFKLTHQVSSCYDVLWVAGQTEE 576 (607)
T ss_dssp HHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCC-HHHHHHHHHHHHHHHHHHHHHCCSTTSCHH
T ss_pred HHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcC-HHHHHHHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 9987621 0 0 012234568888999999999998 7776 8888888999999999999999987643 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009332 413 QQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 413 ~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
....|+.++.++..+|+++|.+|||.++
T Consensus 577 ~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 577 LATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3457999999999999999999999875
No 16
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=1.9e-45 Score=416.35 Aligned_cols=402 Identities=18% Similarity=0.191 Sum_probs=292.4
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHH----cCCChH------------
Q 009332 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND----LGENPL------------ 103 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~----~g~~~~------------ 103 (537)
..++.+.|+|+|.+||||++++++.|+++||.|++||+|.|+.|+|.||.++..++.+ .|+++.
T Consensus 36 f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~ 115 (862)
T 1gax_A 36 FVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVW 115 (862)
T ss_dssp EEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHH
T ss_pred EEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHH
Confidence 3344445666699999999999999999999999999999999999999988877753 477654
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccc---hh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCC-------------
Q 009332 104 SLSNRYCQEYLVDMADLQCLPPTYQPR---VS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------- 165 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~l~i~~~~~~~r---~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~------------- 165 (537)
+++++|.+.+.+.+++||+.. | +.| |+ +|...++.+|.+|.++|++|++...|+||+.+.
T Consensus 116 ~~~~~~~~~~~~q~~rlG~s~-D-w~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~ 193 (862)
T 1gax_A 116 QWKEESGGTILKQLKRLGASA-D-WSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPT 193 (862)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-C-GGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECCE
T ss_pred HHHHHHHHHHHHHHHHhCccc-c-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccccccc
Confidence 668999999999999999984 4 233 33 789999999999999999999999999998751
Q ss_pred ----------------------------------------------------CCCCCCcchhch---hhhcCCCc-----
Q 009332 166 ----------------------------------------------------PNYGRLSGQRLE---NNRAGERV----- 185 (537)
Q Consensus 166 ----------------------------------------------------~~yG~ls~~~l~---~~~~g~~~----- 185 (537)
|.+|+-.+.-.+ .+..|..+
T Consensus 194 ~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~P 273 (862)
T 1gax_A 194 PGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTP 273 (862)
T ss_dssp EEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCG
T ss_pred cceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecC
Confidence 111110000000 00000000
Q ss_pred ---------------c----ccc-cc--cCC--ccce---------------------------------ecc-------
Q 009332 186 ---------------A----VDS-RK--RNP--ADFA---------------------------------LWK------- 201 (537)
Q Consensus 186 ---------------~----~~~-~k--~~~--~df~---------------------------------lwk------- 201 (537)
. ++. .+ .+. .+|. -|+
T Consensus 274 ahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~ 353 (862)
T 1gax_A 274 AHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEY 353 (862)
T ss_dssp GGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCE
T ss_pred CCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEE
Confidence 0 000 00 000 0000 000
Q ss_pred ------------------------------------------cccCCCCccccCCCCCCCchhhh-hHHH----------
Q 009332 202 ------------------------------------------AAKAGEPSWDSPWGPGRPGWHIE-CSAM---------- 228 (537)
Q Consensus 202 ------------------------------------------~~~~g~~~w~~~wG~g~PgWhie-cs~m---------- 228 (537)
..++-.+++...||.+.|.|+.+ |..+
T Consensus 354 ~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l~~ 433 (862)
T 1gax_A 354 AIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLE 433 (862)
T ss_dssp EECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGTTC
T ss_pred EecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEeccccccc
Confidence 00122355667899999998753 3110
Q ss_pred ------------------------HHh-----hcC-----------CCeeEEEecccCcCccchhhHHHhhhccCC-CCc
Q 009332 229 ------------------------SAH-----YLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 267 (537)
Q Consensus 229 ------------------------~~~-----~~g-----------~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~ 267 (537)
.+. .+| .|.|+|++|+|++|+|+.+.++++.++.+. ||.
T Consensus 434 ~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk 513 (862)
T 1gax_A 434 DPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFK 513 (862)
T ss_dssp CCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBS
T ss_pred cchhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCccc
Confidence 000 012 378999999999999999999998877765 668
Q ss_pred eEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009332 268 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA 345 (537)
Q Consensus 268 ~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~ 345 (537)
++++| ||++. +|+|||||+||+|+|.|++++||+|++|||+++. +++++++||++.+.+..+.+.+++++++.+...
T Consensus 514 ~v~~h-G~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~ 592 (862)
T 1gax_A 514 TVLLH-GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLS 592 (862)
T ss_dssp EEEEE-CCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEe-eeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88775 88884 9999999999999999999999999999999996 999999999999999999999999887555444
Q ss_pred cCcccc-CCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHH--HHHHHHHhhhcccCchhhhHHHHHHHH
Q 009332 346 LSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLR 422 (537)
Q Consensus 346 l~~~~~-~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~~~~~~~~~~~~~~~l~ 422 (537)
+..... .......|+++++.+..+...+.++| ++|+++.|+.. |++|+ ...|+|++..+++.... +.....
T Consensus 593 ~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~l~~~----~~~~~~ 666 (862)
T 1gax_A 593 REGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAARE-VYELVWSEFCDWYLEAAKPALKAG----NAHTLR 666 (862)
T ss_dssp SSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHTT----BHHHHH
T ss_pred ccCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHhhHHHHHHcchhhhcc----HHHHHH
Confidence 432110 01122346899999999999999999 99999999999 99999 45799998877642111 122334
Q ss_pred HHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009332 423 KIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 423 ~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.+..+|..++.+|. |+|. .++++|+.+.
T Consensus 667 ~l~~~l~~~~~lL~P~~P~-~aEeiw~~L~ 695 (862)
T 1gax_A 667 TLEEVLAVLLKLLHPMMPF-LTSELYQALT 695 (862)
T ss_dssp HHHHHHHHHHHHHTTTSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhH-HHHHHHHhcC
Confidence 56667777888884 8887 7889999885
No 17
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=6.6e-48 Score=417.92 Aligned_cols=271 Identities=15% Similarity=0.199 Sum_probs=223.0
Q ss_pred EEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhh--HHH---HHHHHHc--CCCh----------
Q 009332 42 MYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD--DKI---IRRANDL--GENP---------- 102 (537)
Q Consensus 42 ~y~~--gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d--~ki---~~~a~~~--g~~~---------- 102 (537)
.|+| ||||||++||||+|++|++|+++|+|+++|++|.|+.+|||+| +|| +.+|.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 6888 9999999999999999999999999999999999999999999 888 7777777 9988
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccchhh-hHH-HHHHHHHHHHHCC----------------ceeeeecceeecCC-
Q 009332 103 LSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-HME-QIKDMITQIINND----------------CAYVVEGDVFFAVE- 163 (537)
Q Consensus 103 ~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~-~~~-~~~~~i~~L~~~G----------------~ay~~~~~v~f~~~- 163 (537)
++++++|.+.|.++|++|||. +|.+ ++|+ |++ .+++++++|+++| ++|.. + ||++.
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~-~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~~ 175 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIE-VDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAMV 175 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCC-CEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCC-ceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceeccc
Confidence 899999999999999999996 6888 9999 998 8999999999999 55543 2 55543
Q ss_pred CCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCC-CCCCCchhhhhHHHHHhhcCCCeeEEEe
Q 009332 164 KSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (537)
Q Consensus 164 ~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~w-G~g~PgWhiecs~m~~~~~g~~~dih~~ 242 (537)
-|+.||+++.. + +.+. .++.+|.+ ++|.+.|.++| |.|+|+||++| +|.+.+||..+| ++
T Consensus 176 ~~~~~~~~~~~-~---------~~~~--~~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd--~~ 236 (523)
T 1irx_A 176 YCPEHRREAEI-I---------EWDG--GWKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVDFE--PA 236 (523)
T ss_dssp ECTTTCCEECE-E---------EECS--SSCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCCBC--CE
T ss_pred cchhhCCcccc-c---------ccCC--CCceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCCCc--CC
Confidence 26778875421 1 1111 14456666 56889999999 99999999999 888889986655 89
Q ss_pred cccCcCcc----chhhHHHhhhccCCCCceEEEEeeeeeeC--CccccccCCCcccHhHHHHhcChhhHHHHHhhcCCCC
Q 009332 243 GIDLIFPH----HENEIAQSCAACQDSNVSYWMHNGHVTNN--NEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316 (537)
Q Consensus 243 G~Dl~f~H----~~~~~a~~~a~~~~~~~~~~~h~g~v~~~--G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~ 316 (537)
|+||++|| |.++++| .+++..+| +|+|+|||+++ |+|||||+||+|++.++++.|+||++||||++.++++
T Consensus 237 G~Dh~~~h~s~~~~~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~ 313 (523)
T 1irx_A 237 GKDHLVAGSSYDTGKEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNK 313 (523)
T ss_dssp EHHHHSTTSHHHHHHHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTS
T ss_pred CcCccCCCcchhhHHHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCC
Confidence 99999999 8899997 46655454 57999999998 8999999999999999999999999999999999999
Q ss_pred CcccCHH-HHHHHHHHHHHHHHHH
Q 009332 317 PLNYSVL-QLDSASDAVFYIYQTL 339 (537)
Q Consensus 317 ~~~fs~~-~l~~~~~~l~~l~~~~ 339 (537)
+++||++ .+.++.+.+.++.+++
T Consensus 314 ~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 314 EIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp CEEECCSTTHHHHHHHHHHHHHHH
T ss_pred CceeCcchhHHHHHHHHHHHHHHH
Confidence 9999999 8988887777666544
No 18
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=1.4e-44 Score=411.00 Aligned_cols=407 Identities=15% Similarity=0.121 Sum_probs=291.5
Q ss_pred CcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHc-CCCh------------
Q 009332 38 GKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GENP------------ 102 (537)
Q Consensus 38 ~~v~~y~~--gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~-g~~~------------ 102 (537)
++-++|++ .|+|+|.+||||+++++++|+++||.|++||+|.|+.|+|+||.+|..+|.+. |.++
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f 115 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERF 115 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHH
Confidence 33344444 45566999999999999999999999999999999999999999999999885 8763
Q ss_pred ----HHHHHHHHHHHHHHHHHcCCCC-CCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchh
Q 009332 103 ----LSLSNRYCQEYLVDMADLQCLP-PTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQR 175 (537)
Q Consensus 103 ----~~~~~~~~~~~~~~l~~l~i~~-~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~ 175 (537)
.+++++|.+.+.+.+++||+.. .+.+.+|+ +|...++.+|.+|.++|++|++...|+||+.+-.. |+..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~---Lad~e 192 (821)
T 1ile_A 116 NQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTP---LSSHE 192 (821)
T ss_dssp HHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEE---CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCc---ccHhH
Confidence 5788899999999999999542 24455554 78899999999999999999999999999874210 11111
Q ss_pred chh-----------------------------------------------------------------------------
Q 009332 176 LEN----------------------------------------------------------------------------- 178 (537)
Q Consensus 176 l~~----------------------------------------------------------------------------- 178 (537)
+.+
T Consensus 193 v~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~ 272 (821)
T 1ile_A 193 VALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEG 272 (821)
T ss_dssp HHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTT
T ss_pred hhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhC
Confidence 100
Q ss_pred -----------hh---c--------CCC--------ccccc--------cccCCccce----------------------
Q 009332 179 -----------NR---A--------GER--------VAVDS--------RKRNPADFA---------------------- 198 (537)
Q Consensus 179 -----------~~---~--------g~~--------~~~~~--------~k~~~~df~---------------------- 198 (537)
+. . |.. |+.+. ...++.||.
T Consensus 273 ~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~ 352 (821)
T 1ile_A 273 TQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE 352 (821)
T ss_dssp SCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG
T ss_pred cEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCccc
Confidence 00 0 000 00000 000000000
Q ss_pred ----------------------------------------------------------------------ecccc-----
Q 009332 199 ----------------------------------------------------------------------LWKAA----- 203 (537)
Q Consensus 199 ----------------------------------------------------------------------lwk~~----- 203 (537)
-|...
T Consensus 353 ~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~ 432 (821)
T 1ile_A 353 PFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEG 432 (821)
T ss_dssp GGTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTT
T ss_pred CcCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhhHh
Confidence 01000
Q ss_pred ---------cCCCCccccCCCCCCCchhhh---------------------------------------h----------
Q 009332 204 ---------KAGEPSWDSPWGPGRPGWHIE---------------------------------------C---------- 225 (537)
Q Consensus 204 ---------~~g~~~w~~~wG~g~PgWhie---------------------------------------c---------- 225 (537)
++-.+++...||.+.|.|+.+ |
T Consensus 433 ~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~ 512 (821)
T 1ile_A 433 RYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVP 512 (821)
T ss_dssp TTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECS
T ss_pred HHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhcc
Confidence 111245566899999977521 1
Q ss_pred --------HHHH-HhhcC------------CCeeEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeee-CCcc
Q 009332 226 --------SAMS-AHYLS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEK 282 (537)
Q Consensus 226 --------s~m~-~~~~g------------~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~K 282 (537)
|... ...++ .|.|+|++|+|++++|+....+++.++.+. ||.++|+| ||++. +|+|
T Consensus 513 dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~K 591 (821)
T 1ile_A 513 YVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQK 591 (821)
T ss_dssp CBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSC
T ss_pred cccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCCC
Confidence 1100 00111 378999999999999998888998887665 77889886 67775 9999
Q ss_pred ccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCHHHHHHH-HHHHHHHHHHHHHHHHh--cCcccc-----CC
Q 009332 283 MSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSA-SDAVFYIYQTLQDCEVA--LSPFQE-----HG 353 (537)
Q Consensus 283 MSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~-~~~l~~l~~~~~~~~~~--l~~~~~-----~~ 353 (537)
||||+||+|+|.|++++||+|++|||+++. +++++++||++.+.++ .+.+.+|+++++++... +..... ..
T Consensus 592 MSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~ 671 (821)
T 1ile_A 592 MSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPE 671 (821)
T ss_dssp CCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCST
T ss_pred CCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccc
Confidence 999999999999999999999999999997 6999999999999984 66788888887665321 111100 01
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHH--HHHHHHHhhhc--ccCchhhhHHHHHHHHHHHHHHH
Q 009332 354 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLK--KKQPKQQQLSLIESLRKIENEVK 429 (537)
Q Consensus 354 ~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~--~~~N~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~ 429 (537)
.....+++++..+..+...+.++| ++|+++.|++. |++|+ ...|.|++..+ +|...+. ..+...+..+..+|+
T Consensus 672 ~~~~~d~~ll~~l~~~~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yl~~~k~~~~~~~~~-~~r~~~~~~l~~~l~ 748 (821)
T 1ile_A 672 KRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSARA-LRDFVVEDLSQWYVRRNRRRFWKNEDA-LDREAAYATLYEALV 748 (821)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHSSTTTHHHHHHHHHTCTTT-SSTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCc-HHHHHHHHHHHHHHH
Confidence 112346788899999999999999 89999999999 99999 66788887654 3543211 112233445667788
Q ss_pred HHHhhcc-cCCCCChHHHHHHHHH
Q 009332 430 EVLRILG-LLPPGAYSEVLQQLKD 452 (537)
Q Consensus 430 ~~l~vLG-i~~~~~~~~~~~~~~~ 452 (537)
.++.+|. |+|. .++++|+.+..
T Consensus 749 ~~~~lLaP~~P~-~aeelw~~L~~ 771 (821)
T 1ile_A 749 LVATLAAPFTPF-LAEVLWQNLVR 771 (821)
T ss_dssp HHHHHHTTTSTT-HHHHHHHHHTT
T ss_pred HHHHHcCCccch-HHHHHHHhccc
Confidence 8888885 8888 78999998853
No 19
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.6e-43 Score=403.93 Aligned_cols=410 Identities=17% Similarity=0.167 Sum_probs=295.2
Q ss_pred CcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCCh------------H
Q 009332 38 GKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENP------------L 103 (537)
Q Consensus 38 ~~v~~y~~--gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~------------~ 103 (537)
++-++|+. .|.|+|.+||||++++++.|+++||.|++||+|.|+.|+|.||.+|..+|.+.|.++ .
T Consensus 46 ~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~ 125 (917)
T 1ffy_A 46 GNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCK 125 (917)
T ss_dssp TSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHH
T ss_pred CCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHH
Confidence 44444444 455669999999999999999999999999999999999999999999999999876 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-CCCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCCCC-------CCCC---
Q 009332 104 SLSNRYCQEYLVDMADLQCLP-PTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------NYGR--- 170 (537)
Q Consensus 104 ~~~~~~~~~~~~~l~~l~i~~-~~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~-------~yG~--- 170 (537)
+++++|.+.+.+.+++||+.. .+...+|+ +|...++.+|.+|.++|++|++...|+||+.+-. .|+.
T Consensus 126 ~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~ 205 (917)
T 1ffy_A 126 EFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRS 205 (917)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccC
Confidence 899999999999999999974 24444454 7888999999999999999999999999987511 0000
Q ss_pred ---------------------------------------Ccch---------h------------------chhh-----
Q 009332 171 ---------------------------------------LSGQ---------R------------------LENN----- 179 (537)
Q Consensus 171 ---------------------------------------ls~~---------~------------------l~~~----- 179 (537)
+.+. + ++..
T Consensus 206 ~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~ 285 (917)
T 1ffy_A 206 ASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLE 285 (917)
T ss_dssp EEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCC
T ss_pred ceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeee
Confidence 0000 0 0000
Q ss_pred --hcCCC----------------------cccccc--------ccCCcccee----------------------------
Q 009332 180 --RAGER----------------------VAVDSR--------KRNPADFAL---------------------------- 199 (537)
Q Consensus 180 --~~g~~----------------------~~~~~~--------k~~~~df~l---------------------------- 199 (537)
..|.. |+.+.. ..++.||.+
T Consensus 286 ~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~ 365 (917)
T 1ffy_A 286 KEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGM 365 (917)
T ss_dssp CCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSS
T ss_pred eeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCc
Confidence 00000 000000 000011111
Q ss_pred --------------------------------ccccc-------------------------------------------
Q 009332 200 --------------------------------WKAAK------------------------------------------- 204 (537)
Q Consensus 200 --------------------------------wk~~~------------------------------------------- 204 (537)
|+..+
T Consensus 366 ~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l 445 (917)
T 1ffy_A 366 FYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMV 445 (917)
T ss_dssp CSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHH
Confidence 11000
Q ss_pred ----CCCCccccCCCCCCCchhhh----------------------------------------h---------------
Q 009332 205 ----AGEPSWDSPWGPGRPGWHIE----------------------------------------C--------------- 225 (537)
Q Consensus 205 ----~g~~~w~~~wG~g~PgWhie----------------------------------------c--------------- 225 (537)
+-.+++...||.+.|.|+.+ |
T Consensus 446 ~~~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~l 525 (917)
T 1ffy_A 446 RDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIM 525 (917)
T ss_dssp HHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEE
T ss_pred hcCccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCc
Confidence 11134456799999977532 0
Q ss_pred -----HHHHHh-h------cCCCeeEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeee-CCccccccCCCcc
Q 009332 226 -----SAMSAH-Y------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFF 291 (537)
Q Consensus 226 -----s~m~~~-~------~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i 291 (537)
|..+.. . +..|.|+|++|+|++++|.....+++.++.+. ||.++++| |||+. +|+|||||+||+|
T Consensus 526 D~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV 604 (917)
T 1ffy_A 526 DVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVI 604 (917)
T ss_dssp CHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCC
T ss_pred CeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcC
Confidence 000000 0 12478999999999987776667777777665 66788665 99997 9999999999999
Q ss_pred cHhHHHHhcChhhHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCcccc---C---CCCCCCChHHHHH
Q 009332 292 TIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE---H---GKTARINPAAEDC 365 (537)
Q Consensus 292 ~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~---~---~~~~~~~~~l~~~ 365 (537)
+|.|++++||+|++|||+++++++++++||++.+.+..+.+.+|+++++.+...+..... . ......|++++..
T Consensus 605 ~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~ 684 (917)
T 1ffy_A 605 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNR 684 (917)
T ss_dssp CHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHH
T ss_pred ChHHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999988888999888777665543210 0 0112346788999
Q ss_pred HHHHHHHHHHHHhhccChhhhhHHHHHHHHH--HHHHHHhhhcccCc--hhhhHHHHHHHHHHHHHHHHHHhhcc-cCCC
Q 009332 366 INKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQP--KQQQLSLIESLRKIENEVKEVLRILG-LLPP 440 (537)
Q Consensus 366 l~~~~~~v~~am~dd~n~~~al~~~L~~l~~--~~N~~~~~~~~~~~--~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~ 440 (537)
+.++...+.++| ++|+++.|++. |++|+. ..|.|++..+++.. ......+......+..+|..++.+|. |+|.
T Consensus 685 l~~~~~~v~~a~-e~~~f~~a~~~-l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~ 762 (917)
T 1ffy_A 685 LREFTASTINNY-ENFDYLNIYQE-VQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVH 762 (917)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 999999999999 99999999999 999998 45778877665321 11122233334455667777788885 7777
Q ss_pred CChHHHHHHHH
Q 009332 441 GAYSEVLQQLK 451 (537)
Q Consensus 441 ~~~~~~~~~~~ 451 (537)
.++++|+.+.
T Consensus 763 -~aEeiw~~l~ 772 (917)
T 1ffy_A 763 -TAEEVWSHTP 772 (917)
T ss_dssp -HHHHHHTTST
T ss_pred -HHHHHHHHcc
Confidence 7889998775
No 20
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-43 Score=402.99 Aligned_cols=204 Identities=18% Similarity=0.162 Sum_probs=163.3
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhh-cC
Q 009332 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AH 313 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~ 313 (537)
++|+|++|+||+||||.++++++.++.+. ++++.|+|||||+++|+|||||+||+|+|.|++++||+|++|||+++ .+
T Consensus 603 p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~ 682 (810)
T 1wkb_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAE 682 (810)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCC
T ss_pred CceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCC
Confidence 78999999999999999999999887664 56688899999999999999999999999999999999999999985 69
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHH
Q 009332 314 YRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 393 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~ 393 (537)
++++++||++.+.++.+.+.++++++.++...... ........+++++..+..+.+.+.++| ++|+++.|+...++.
T Consensus 683 ~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~~--~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~~ 759 (810)
T 1wkb_A 683 HDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVK--GNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFYS 759 (810)
T ss_dssp TTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCCCC--SCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTHH
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence 99999999999999999999999888765432110 001112346788899999999999999 999999999852579
Q ss_pred HHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHH
Q 009332 394 ALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 450 (537)
Q Consensus 394 l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~ 450 (537)
+++.+|+|++..+.- . +......+..+|+.++.+|. |+|. .++++|+.+
T Consensus 760 l~~~~n~yi~~~k~~----~---~~~~~~~l~~~l~~l~~lLaP~~P~-~aEelw~~L 809 (810)
T 1wkb_A 760 IMNDLRWYLRRTEGR----D---DEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKL 809 (810)
T ss_dssp HHHHHHHHHHHTTTC----C---CHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHhcCc----c---hhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhc
Confidence 999999999876521 1 11113345567777777774 7776 566666543
No 21
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.2e-42 Score=392.31 Aligned_cols=407 Identities=16% Similarity=0.158 Sum_probs=281.0
Q ss_pred cccccCC-CCcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHH
Q 009332 30 ELFTPIV-PGKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS 106 (537)
Q Consensus 30 ~~f~p~~-~~~v~~y~~--gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~ 106 (537)
..|.+.. +++.++|+| .|+|+|++||||+|+++++|+++||+|++||+|.+++|+|++|.+|+.+|.+.|.+|.+++
T Consensus 42 ~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~ 121 (880)
T 4arc_A 42 RTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWT 121 (880)
T ss_dssp TTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHH
T ss_pred CCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHH
Confidence 3565542 356677776 5777799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-CCccchh--hhHHHHHHHHHHHHHCCceeeeecceeecCCC-------------CCCCCC
Q 009332 107 NRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGR 170 (537)
Q Consensus 107 ~~~~~~~~~~l~~l~i~~~-~~~~r~s--~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~-------------~~~yG~ 170 (537)
+++.+.|.++|++||+..+ +.+.+++ +|...++++|.+|.++|++|++++.|+||+.+ |+.||.
T Consensus 122 ~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~ 201 (880)
T 4arc_A 122 YDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDT 201 (880)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------------------------
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCC
Confidence 9999999999999999853 1333343 79999999999999999999999999999874 444542
Q ss_pred -------------Ccc---h---hchhh---------------------------hc----------------CCC-ccc
Q 009332 171 -------------LSG---Q---RLENN---------------------------RA----------------GER-VAV 187 (537)
Q Consensus 171 -------------ls~---~---~l~~~---------------------------~~----------------g~~-~~~ 187 (537)
++. . .++.+ .. |.+ +.+
T Consensus 202 ~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav 281 (880)
T 4arc_A 202 KVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAV 281 (880)
T ss_dssp -----CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEE
T ss_pred ccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEE
Confidence 000 0 00000 00 000 000
Q ss_pred c------------------------------------------c--cccCC-----------------------------
Q 009332 188 D------------------------------------------S--RKRNP----------------------------- 194 (537)
Q Consensus 188 ~------------------------------------------~--~k~~~----------------------------- 194 (537)
. . +-.+|
T Consensus 282 ~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pah 361 (880)
T 4arc_A 282 AAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGH 361 (880)
T ss_dssp CTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTTT
T ss_pred CCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccCcEEecCCCCCEeEEEEeCccccCCCCceEEEccCC
Confidence 0 0 00011
Q ss_pred --ccceecccc------------------------cCC-----------------------------------------C
Q 009332 195 --ADFALWKAA------------------------KAG-----------------------------------------E 207 (537)
Q Consensus 195 --~df~lwk~~------------------------~~g-----------------------------------------~ 207 (537)
+||.+++.. .+| .
T Consensus 362 d~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~ 441 (880)
T 4arc_A 362 DQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWG 441 (880)
T ss_dssp CHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEE
T ss_pred CHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccce
Confidence 122211100 000 0
Q ss_pred CccccCCCCCCCchhhh-hHH-----------------------------------------------H-----HHhhc-
Q 009332 208 PSWDSPWGPGRPGWHIE-CSA-----------------------------------------------M-----SAHYL- 233 (537)
Q Consensus 208 ~~w~~~wG~g~PgWhie-cs~-----------------------------------------------m-----~~~~~- 233 (537)
+++..-||.+.|-||.+ |.. | |+.||
T Consensus 442 iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~~ 521 (880)
T 4arc_A 442 VSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYA 521 (880)
T ss_dssp CEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHHH
T ss_pred eeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccCCCcceeCCCcCCCcccCcHHHH
Confidence 22344699999998854 310 0 11110
Q ss_pred ------------C-------CCeeEEEecccCcCccchhhH---HHhhhc---cC-CCCceEEEEeeeee--------eC
Q 009332 234 ------------S-------SKFDIHGGGIDLIFPHHENEI---AQSCAA---CQ-DSNVSYWMHNGHVT--------NN 279 (537)
Q Consensus 234 ------------g-------~~~dih~~G~Dl~f~H~~~~~---a~~~a~---~~-~~~~~~~~h~g~v~--------~~ 279 (537)
. .|+|+++||+||...|..+.. ..+..+ .+ .||.++ +++|||+ .+
T Consensus 522 r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~l-l~qGmVl~~~~~~~d~~ 600 (880)
T 4arc_A 522 RYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQL-LCQGMVLADAFYYVGEN 600 (880)
T ss_dssp HTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEE-ECCCCEEEEEEEEECTT
T ss_pred hhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHe-EEeceEeecceeccccC
Confidence 0 278999999998877764433 222222 23 455555 8889996 25
Q ss_pred Cc------------------------------------cccccCCCcccHhHHHHhcChhhHHHHHhhc-CCCCCcccCH
Q 009332 280 NE------------------------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSV 322 (537)
Q Consensus 280 G~------------------------------------KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~ 322 (537)
|+ |||||+||+|+|.|++++||+|++|||+++. +++++++||+
T Consensus 601 G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~ 680 (880)
T 4arc_A 601 GERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQE 680 (880)
T ss_dssp SCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCH
T ss_pred CcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCH
Confidence 65 9999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccc-cCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHHHHHHHHHHH
Q 009332 323 LQLDSASDAVFYIYQTLQDCEVALSPFQ-EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (537)
Q Consensus 323 ~~l~~~~~~l~~l~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~ 401 (537)
+.+..+.+.+.++++++..+........ ........+++++..+.++...|.++|+++|+++.|++. |++|+..+|+|
T Consensus 681 ~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~-l~efvn~l~k~ 759 (880)
T 4arc_A 681 SGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA-IMELMNKLAKA 759 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHhh
Confidence 9999999999999998876544311100 001112346889999999999999999558999999999 99999998875
Q ss_pred HhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009332 402 LNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
... . . .....+..+|..++.+|. |+|. .++++|+.++
T Consensus 760 ~~~------~---~---~~~~~l~~~l~~ll~LLaPf~Ph-iaEElW~~Lg 797 (880)
T 4arc_A 760 PTD------G---E---QDRALMQEALLAVVRMLNPFTPH-ICFTLWQELK 797 (880)
T ss_dssp CCS------S---H---HHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHTT
T ss_pred hcc------c---h---HHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHcC
Confidence 311 0 0 112234566777788886 7776 6778887764
No 22
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.8e-42 Score=395.28 Aligned_cols=206 Identities=17% Similarity=0.159 Sum_probs=167.9
Q ss_pred CCeeEEEecccCcCccchhhHHHhhhccCC-CCceEEEEeeeeeeCCccccccCCCcccHhHHHHhcChhhHHHHHhh-c
Q 009332 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 312 (537)
Q Consensus 235 ~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~ 312 (537)
.|+|+|++|+||+||||.++++++.++.+. ++++.|+|||||+.+|+|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 378999999999999999999999887764 56688899999999999999999999999999999999999999985 6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHHHH
Q 009332 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (537)
Q Consensus 313 ~~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~L~ 392 (537)
+++++++|+++.+.++.+.+.++++++.++..... .........|++++..+..+...+.++| ++|+++.|+..-++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~--~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEV--KGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 99999999999999999999999998876643210 0011112346889999999999999999 99999999986247
Q ss_pred HHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHH
Q 009332 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 451 (537)
Q Consensus 393 ~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~ 451 (537)
.++..+|+|++..+.- . +......+..+|+.++.+|. |+|. .++++|+.++
T Consensus 759 ~l~~~~n~Yi~~~k~~----~---~~~~~~~l~~~l~~l~~LLaP~~P~-~aEeiw~~L~ 810 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGR----D---DEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKLG 810 (967)
T ss_dssp HHHHHHHHHHHHTTTC----C---CHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHSS
T ss_pred HHHHHHHHHHHhccch----h---HHHHHHHHHHHHHHHHHHhccccch-HHHHHHHhcC
Confidence 8999999999876521 0 11223455667777777874 8887 7889998874
No 23
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=5.5e-41 Score=381.51 Aligned_cols=428 Identities=15% Similarity=0.110 Sum_probs=284.9
Q ss_pred CcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009332 38 GKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~--gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++.++|++ .|+|+|.+||||+|+++++|+++||+|++||+|.|++|+|++|++|+.+|.+.|.+|.+++++|.+.|.+
T Consensus 31 ~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~ 110 (878)
T 2v0c_A 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKE 110 (878)
T ss_dssp ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45556665 3888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCC---CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC-------------CCC-CCCC-------
Q 009332 116 DMADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPN-YGRL------- 171 (537)
Q Consensus 116 ~l~~l~i~~~---~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~-------------~~~-yG~l------- 171 (537)
+|++|||..+ ...+...+|...++++|.+|.++|++|++.+.||||+.+ |+. ||..
T Consensus 111 ~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~ 190 (878)
T 2v0c_A 111 SLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELE 190 (878)
T ss_dssp HHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEE
T ss_pred HHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecc
Confidence 9999999853 123444589999999999999999999999999999885 334 5421
Q ss_pred ------cc---h---hchhh-------------------------hcC--C-------Ccc---------cc--------
Q 009332 172 ------SG---Q---RLENN-------------------------RAG--E-------RVA---------VD-------- 188 (537)
Q Consensus 172 ------s~---~---~l~~~-------------------------~~g--~-------~~~---------~~-------- 188 (537)
+. . .++.+ ..| . +.+ +.
T Consensus 191 ~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~ 270 (878)
T 2v0c_A 191 QWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLE 270 (878)
T ss_dssp EEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHH
T ss_pred eeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeeh
Confidence 10 0 00000 000 0 000 00
Q ss_pred --------------------------------------ccccCC-------------------------------cccee
Q 009332 189 --------------------------------------SRKRNP-------------------------------ADFAL 199 (537)
Q Consensus 189 --------------------------------------~~k~~~-------------------------------~df~l 199 (537)
.+-.+| .||.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~ 350 (878)
T 2v0c_A 271 LAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 350 (878)
T ss_dssp HSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHH
T ss_pred hccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHH
Confidence 000011 12211
Q ss_pred cccc-----------------------------------------------------------------cCCCCccccCC
Q 009332 200 WKAA-----------------------------------------------------------------KAGEPSWDSPW 214 (537)
Q Consensus 200 wk~~-----------------------------------------------------------------~~g~~~w~~~w 214 (537)
++.. ++-.+++..-|
T Consensus 351 ~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~W 430 (878)
T 2v0c_A 351 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYW 430 (878)
T ss_dssp HHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSS
T ss_pred HHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhccccc
Confidence 1100 00012445579
Q ss_pred CCCCCchhhh-hH------------------H--H--------------------------------------HHhh---
Q 009332 215 GPGRPGWHIE-CS------------------A--M--------------------------------------SAHY--- 232 (537)
Q Consensus 215 G~g~PgWhie-cs------------------~--m--------------------------------------~~~~--- 232 (537)
|.+.|-||.+ |. . . |+.|
T Consensus 431 G~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~ 510 (878)
T 2v0c_A 431 GTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLR 510 (878)
T ss_dssp SEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHH
T ss_pred CCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhh
Confidence 9999988742 21 0 0 0000
Q ss_pred cC-----------------CCeeEEEecccCcCccchh---hHHHhh--h-ccC-CCCceEEEEeeeeee----------
Q 009332 233 LS-----------------SKFDIHGGGIDLIFPHHEN---EIAQSC--A-ACQ-DSNVSYWMHNGHVTN---------- 278 (537)
Q Consensus 233 ~g-----------------~~~dih~~G~Dl~f~H~~~---~~a~~~--a-~~~-~~~~~~~~h~g~v~~---------- 278 (537)
++ .|+|++.+|+|+..-|..+ +...+. + +.+ .||.++ +.||||+.
T Consensus 511 ~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l-~~~G~vl~~~~~~~~~~~ 589 (878)
T 2v0c_A 511 YTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGL-FTQGMVLAWTDFGPVEVE 589 (878)
T ss_dssp TTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBE-ECCCCEEEEEEEEEEEEE
T ss_pred ccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhh-eecceEeccceecccccc
Confidence 00 3799999999976555332 222222 2 223 466777 66799975
Q ss_pred -------------------------------------CC-------ccccccCCCcccHhHHHHhcChhhHHHHHhh-cC
Q 009332 279 -------------------------------------NN-------EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AH 313 (537)
Q Consensus 279 -------------------------------------~G-------~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~ 313 (537)
+| +|||||+||+|+|.|++++||+|++|||+++ ++
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~ 669 (878)
T 2v0c_A 590 GSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAP 669 (878)
T ss_dssp TTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSC
T ss_pred ccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCC
Confidence 89 8999999999999999999999999999999 69
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcC-ccc--cCCCCCCCChHHHHHHHHHHHHHHHHHhhccChhhhhHHH
Q 009332 314 YRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS-PFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 390 (537)
Q Consensus 314 ~~~~~~fs~~~l~~~~~~l~~l~~~~~~~~~~l~-~~~--~~~~~~~~~~~l~~~l~~~~~~v~~am~dd~n~~~al~~~ 390 (537)
++++++||++.+..+.+.+.++++++......+. ... ........+++++..+.++...+.++| ++|+++.|++.
T Consensus 670 ~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~- 747 (878)
T 2v0c_A 670 PENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA- 747 (878)
T ss_dssp TTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-
T ss_pred CCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-
Confidence 9999999999999999999999887765433210 000 001112346899999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhhhcccCchhhhHHHHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHHHHHh--------hhhcc
Q 009332 391 FQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKDKALK--------RAELT 461 (537)
Q Consensus 391 L~~l~~~~N~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~vLG-i~~~~~~~~~~~~~~~~~~~--------~~~~~ 461 (537)
|++|+..+|+|.+... . . ..+..+|+.++.+|. |+|. .++++|+.+++..+. ..-+.
T Consensus 748 l~~f~~~l~k~~~~~~-----~----~----~~l~~~l~~l~~LLaPf~P~-~aEElw~~Lg~~sv~~~~wP~~d~~~l~ 813 (878)
T 2v0c_A 748 LMEFLNALYEYRKDRP-----V----T----PVYRTAIRYYLQMLFPFAPH-LAEELWHWFWPDSLFEAGWPELDEKALE 813 (878)
T ss_dssp HHHHHHHHHHHHHHCC-----S----C----HHHHHHHHHHHHHHTTTSHH-HHHHHHHHHCSSCGGGSCCCCCCGGGGC
T ss_pred HHHHHHHHhhhcccch-----h----H----HHHHHHHHHHHHHHcccchH-HHHHHHHHcCCCceeecCCCCCCHHHHH
Confidence 9999999999865311 0 0 234566777777774 7777 788899887511000 01123
Q ss_pred HHHHHHHHHHHHHHhcCCChh
Q 009332 462 EEDVLQLIEERAAARKNKDFS 482 (537)
Q Consensus 462 ~~~i~~li~~R~~AR~~Kdf~ 482 (537)
++.++.+++.|...|..-+..
T Consensus 814 ~~~~~~~vqvngkvR~~i~v~ 834 (878)
T 2v0c_A 814 KDVVEVAVQVNGAVAGTIHIP 834 (878)
T ss_dssp ---------------------
T ss_pred HHHHHHHHhhHHHHHHHcccC
Confidence 456777778887777665543
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=1e-39 Score=345.64 Aligned_cols=356 Identities=16% Similarity=0.149 Sum_probs=262.9
Q ss_pred CCCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHH-------HHHHHH--cCCC-----
Q 009332 36 VPGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI-------IRRAND--LGEN----- 101 (537)
Q Consensus 36 ~~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki-------~~~a~~--~g~~----- 101 (537)
.+++|.+-.++|+|+|++||||+|+++++|+++|++++.||+|...+.+.|+|..+ ..++.+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 45789999999999999999999999999999999999999999999999999876 233232 1221
Q ss_pred --------------------------------hHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCC
Q 009332 102 --------------------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 149 (537)
Q Consensus 102 --------------------------------~~~~~~~~~~~~~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G 149 (537)
++...+...+.|.+++++|||.+ |.+...|...+.+.++++.|.++|
T Consensus 108 ~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~f-D~~~~Ess~~~~~~~vv~~L~~~g 186 (464)
T 3fnr_A 108 QYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKI-DSYVSERSYYDALNATLESLKEHK 186 (464)
T ss_dssp SCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCC-SCEEEGGGGSTTHHHHHHHHHHTT
T ss_pred hhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-eeecCHHHHHHHHHHHHHHHHHCC
Confidence 11223334567899999999984 666555432238899999999999
Q ss_pred ceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCccceecccccCCCCccccCCCCCCCchhhh-hHHH
Q 009332 150 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE-CSAM 228 (537)
Q Consensus 150 ~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhie-cs~m 228 (537)
++|+++|.+|++... +|. +.|.++-|+ + |-|.|... .++.
T Consensus 187 ~~~e~dGa~~~~~~~---~g~-----------------------~~~~vl~ks--D-----------G~~~Y~t~DiA~~ 227 (464)
T 3fnr_A 187 GIYEQEGKIWLASSQ---KGD-----------------------EKDRVIIRE--D-----------GRGTYLAADIVYH 227 (464)
T ss_dssp CEEEETTEEEECGGG---GTC-----------------------SSCEEEECT--T-----------SCBCHHHHHHHHH
T ss_pred CEEEeCCeEEEEecc---cCC-----------------------CCceEEEeC--C-----------CceehhhHHHHHH
Confidence 999999999987642 221 114444443 3 34444421 1122
Q ss_pred HHhh-cCCCeeEEEecccCcCccchhhHH---HhhhccCCCCce-EEEEeeeeee--CCc--cccccCCCcccHhHHHHh
Q 009332 229 SAHY-LSSKFDIHGGGIDLIFPHHENEIA---QSCAACQDSNVS-YWMHNGHVTN--NNE--KMSKSLGNFFTIRQITER 299 (537)
Q Consensus 229 ~~~~-~g~~~dih~~G~Dl~f~H~~~~~a---~~~a~~~~~~~~-~~~h~g~v~~--~G~--KMSKS~Gn~i~~~dll~~ 299 (537)
..++ .+....|++.|.| ||.+... ...+++ .++.+ ..+++|||++ +|+ |||||+||+|+|.|++++
T Consensus 228 ~~r~~~~~d~~Iyv~G~d----q~~~f~~l~~~l~~lG-~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~ 302 (464)
T 3fnr_A 228 KDKMSRGYGKCINIWGAD----HHGYIPRMKAAMEFLG-FDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDE 302 (464)
T ss_dssp HHHHTSSCSEEEEEEEGG----GGGGHHHHHHHHHTTT-CCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHH
T ss_pred HHHHHcCCCeEEEEecCc----HHHHHHHHHHHHHHcC-CCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhh
Confidence 2222 2445668899999 5533332 223333 33344 3467899976 886 999999999999999999
Q ss_pred cChhhHHHHHhhcCCCCCcccCHHHHHHHH--HHHHHHHHHHHHHHHhcCccccCCC---------CCCCChHHHHHHHH
Q 009332 300 YHPLALRHFLISAHYRSPLNYSVLQLDSAS--DAVFYIYQTLQDCEVALSPFQEHGK---------TARINPAAEDCINK 368 (537)
Q Consensus 300 ~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~--~~l~~l~~~~~~~~~~l~~~~~~~~---------~~~~~~~l~~~l~~ 368 (537)
+|+|++|||+++.+++++++|+++.+.+.. |...+++|+++|+++++++....+. ..+.+.+++..+.+
T Consensus 303 ~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~ 382 (464)
T 3fnr_A 303 IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALN 382 (464)
T ss_dssp HCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHH
Confidence 999999999999999999999999997754 3466899999999998876532110 01125778889999
Q ss_pred HHHHHHHHHhhccChhhhhHHHHHHHHHHHHHHHhhhcccCch-hhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009332 369 LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (537)
Q Consensus 369 ~~~~v~~am~dd~n~~~al~~~L~~l~~~~N~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~l~vLGi~~~ 440 (537)
+++.+.+++ ++++++.++.. |++|+..+|+||+.++++... +...+|+.++.++ +|+++|.+|||.++
T Consensus 383 ~~~~v~~a~-~~~ep~~i~~y-L~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 383 LKAVLNDAF-EARALQKIPDY-LKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHHHHHH-HHTCTTHHHHH-HHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 999999999 89986666655 999999999999999987543 3356788888888 99999999999876
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.8e-35 Score=312.81 Aligned_cols=251 Identities=19% Similarity=0.185 Sum_probs=183.6
Q ss_pred eCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC
Q 009332 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (537)
Q Consensus 45 ~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~ 124 (537)
-.|||||++||||||++++.+.++| +|.+.|+.+|||.|++ ++ ...|.+.|.++|++||+.+
T Consensus 101 FaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~---R~----------~~e~~~~I~edL~wLGl~w 162 (553)
T 3aii_A 101 FAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR---RV----------DPEAYDMIPADLEWLGVEW 162 (553)
T ss_dssp ECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---GC----------CTTHHHHHHHHHHHHTCCC
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---cc----------cHHHHHHHHHHHHHcCCCC
Confidence 3699999999999999987555555 7899999999999974 11 3469999999999999995
Q ss_pred CCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC----CCC------CCCCcchh-c---hhhhcCCC------
Q 009332 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPN------YGRLSGQR-L---ENNRAGER------ 184 (537)
Q Consensus 125 ~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~----~~~------yG~ls~~~-l---~~~~~g~~------ 184 (537)
|..+++|+|++.+++++++|+++|+|| +|||... ... |..++..+ + +++..|..
T Consensus 163 -d~~~~qSdr~~~y~~~~~~Li~~G~AY-----~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR 236 (553)
T 3aii_A 163 -DETVIQSDRMETYYEYTEKLIERGGAY-----VCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVR 236 (553)
T ss_dssp -SEEEEGGGGHHHHHHHHHHHHHTTSEE-----EECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEE
T ss_pred -CCCcccccCHHHHHHHHHHHHHcCCce-----eCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEE
Confidence 788999999999999999999999999 5777653 112 33344321 1 24555642
Q ss_pred c--cccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCc---cchhhHHHh-
Q 009332 185 V--AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP---HHENEIAQS- 258 (537)
Q Consensus 185 ~--~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~---H~~~~~a~~- 258 (537)
+ +....+.++.||++|+..+.+++.|-..|. ++|+||++|+. |.|.+|++++++ |+.+.++|.
T Consensus 237 ~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~-g~PtYhfa~~v----------DD~~~GIThviRG~D~~~nt~~Q~~ 305 (553)
T 3aii_A 237 VKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYR-VYPMMNFSVAV----------DDHLLGVTHVLRGKDHLANREKQEY 305 (553)
T ss_dssp ECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCC-EEECHHHHHHH----------HHHHTTCCEEEC-----CHHHHHHH
T ss_pred EEcccccCCCCCCCcEEEEecCCCCCccCCCce-eeeeeeeeeee----------eeccCCCceEeccHhhhhCHHHHHH
Confidence 2 222223467899999987766665333332 69999999964 334444444444 999999998
Q ss_pred -hhccCCCCceEEEEeeeeeeCCccccccCCC---------------cccHhHHHHh-cChhhHHHHHhhcCC-CCCccc
Q 009332 259 -CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAHY-RSPLNY 320 (537)
Q Consensus 259 -~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~dll~~-~~~d~lR~~ll~~~~-~~~~~f 320 (537)
..+.+.++++|| |+++|+++|+|||||+|| +.|+.++.+. |.|++||.|+++.++ +++.+|
T Consensus 306 l~~alG~~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~ 384 (553)
T 3aii_A 306 LYRHLGWEPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTM 384 (553)
T ss_dssp HHHHHTCCCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCC
T ss_pred HHHHcCCCCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccc
Confidence 333355677785 999999999999999998 7789999975 999999999999888 689999
Q ss_pred CHHHHHHHHHH
Q 009332 321 SVLQLDSASDA 331 (537)
Q Consensus 321 s~~~l~~~~~~ 331 (537)
|++.|.++.+.
T Consensus 385 s~~~L~~~~r~ 395 (553)
T 3aii_A 385 SWKKIYGLNRS 395 (553)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987654
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=3.1e-34 Score=304.75 Aligned_cols=251 Identities=19% Similarity=0.139 Sum_probs=201.5
Q ss_pred eCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC
Q 009332 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (537)
Q Consensus 45 ~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~ 124 (537)
.+|+|||++||||||++++.+.++| +|.+.|+.+|||.|+. .....|.+.|+++|++||+.+
T Consensus 31 FaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~wLGl~w 92 (553)
T 1qtq_A 31 FPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEWLGFHW 92 (553)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTTCCC
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHHcCCCC
Confidence 4899999999999999988776666 6788999999999862 245679999999999999998
Q ss_pred CCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------CCCCCC------Ccchh-c---hhhhcCC---
Q 009332 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SPNYGR------LSGQR-L---ENNRAGE--- 183 (537)
Q Consensus 125 ~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------~~~yG~------ls~~~-l---~~~~~g~--- 183 (537)
++..+++|+|++.+.+++++|+++|+|| +|||... +..+|. ++..+ + +++.+|.
T Consensus 93 de~~~~qSer~~~~~~~a~~Li~~G~AY-----~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~ 167 (553)
T 1qtq_A 93 SGNVRYSSDYFDQLHAYAIELINKGLAY-----VDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEE 167 (553)
T ss_dssp SSSCEEGGGGHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred CCCCeehcccHHHHHHHHHHHHHCCCce-----ecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccC
Confidence 7889999999999999999999999999 5777642 112333 22211 1 2455665
Q ss_pred -----C--ccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcC---ccchh
Q 009332 184 -----R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF---PHHEN 253 (537)
Q Consensus 184 -----~--~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f---~H~~~ 253 (537)
+ ++....+.++.||++||..+++++.|.++| .++|+||++|+ +|.|.+|++|++ +|+.|
T Consensus 168 g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~v----------vDDh~~GITHviRg~e~~~n 236 (553)
T 1qtq_A 168 GKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHC----------ISDALEGITHSLCTLEFQDN 236 (553)
T ss_dssp TSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHTTCSEEEEEGGGTTT
T ss_pred CceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccE----------EEeccCCcceEeeccchhhh
Confidence 2 223344667789999998888888999999 68999999884 577888888888 89999
Q ss_pred hHHHh---hhccCCCCceEEEEeeeeeeCCccccccCCC---------------cccHhHHHHh-cChhhHHHHHhhcCC
Q 009332 254 EIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAHY 314 (537)
Q Consensus 254 ~~a~~---~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~dll~~-~~~d~lR~~ll~~~~ 314 (537)
.++|. .|++...++++| |+++++++|+|||||+|| ++|+.++.+. |.|++||.|+++.++
T Consensus 237 ~~~q~~l~~alg~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~ 315 (553)
T 1qtq_A 237 RRLYDWVLDNITIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGV 315 (553)
T ss_dssp HHHHHHHHHTSCCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCC
Confidence 99998 566433357786 789999999999999997 7899999975 999999999999988
Q ss_pred CCCcc-cCHHHHHHHHH
Q 009332 315 RSPLN-YSVLQLDSASD 330 (537)
Q Consensus 315 ~~~~~-fs~~~l~~~~~ 330 (537)
+...+ +++..+.+...
T Consensus 316 s~~~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 316 TKQDNTIEMASLESCIR 332 (553)
T ss_dssp CSSCCCBCHHHHHHHHH
T ss_pred CCCccccchhhHHHHHH
Confidence 76554 78888877544
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=2.7e-33 Score=309.35 Aligned_cols=262 Identities=17% Similarity=0.108 Sum_probs=201.4
Q ss_pred CCCcceEEEe--CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 009332 36 VPGKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113 (537)
Q Consensus 36 ~~~~v~~y~~--gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~ 113 (537)
.+|++..++| +|+|||++||||||++++...++| +|.+.|+.+|||.|++ | -...|.+.|
T Consensus 60 ~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~e~~~~I 121 (851)
T 2hz7_A 60 EAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE---L----------ARQEYVDSI 121 (851)
T ss_dssp HTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---T----------CCHHHHHHH
T ss_pred hcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---c----------ccHHHHHHH
Confidence 3566666777 999999999999999988666665 6889999999999974 1 155799999
Q ss_pred HHHHHHcCCCCCCCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------CCCCCC------Ccchh-c--
Q 009332 114 LVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SPNYGR------LSGQR-L-- 176 (537)
Q Consensus 114 ~~~l~~l~i~~~~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------~~~yG~------ls~~~-l-- 176 (537)
+++|++|||.+++..+++|+|++.+++++++|+++|+|| +|||... +..+|. ++..+ +
T Consensus 122 ledL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY-----~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~ 196 (851)
T 2hz7_A 122 ADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAY-----VESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDL 196 (851)
T ss_dssp HHHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEE-----EECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHH
T ss_pred HHHHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcE-----eecCCHHHHHHHhcchhccCCCcccccCCHHHHhhH
Confidence 999999999987889999999999999999999999999 5777652 222333 33321 2
Q ss_pred -hhhhcCC--------C--ccccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEeccc
Q 009332 177 -ENNRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (537)
Q Consensus 177 -~~~~~g~--------~--~~~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~D 245 (537)
+++..|. | ++....+.++.||++||..+.+++.|.++| .++|+||++|+.. .+..|. +-.+.|.|
T Consensus 197 fe~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~vVD-D~~~GI--THViRG~D 272 (851)
T 2hz7_A 197 LRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHPLQ-DAIEGV--THSMCSLE 272 (851)
T ss_dssp HHHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHHHH-HHHHTC--SEEEEEGG
T ss_pred HHHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeEee-eccCCc--ceeecchh
Confidence 3455665 2 233344667789999999888889999999 7899999999743 223332 22234445
Q ss_pred CcCccchhhHHHh---hhccCCCCceEEEEeeeeeeCCccccccCCC---------------cccHhHHHHh-cChhhHH
Q 009332 246 LIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALR 306 (537)
Q Consensus 246 l~f~H~~~~~a~~---~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~dll~~-~~~d~lR 306 (537)
|+.|.++|. .+++....+++| |+++++++|.|||||+|| ++|+.++.+. |.|++||
T Consensus 273 ----~~~n~~~q~~l~~alG~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr 347 (851)
T 2hz7_A 273 ----FVDNRAIYDWLMEKLNFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVR 347 (851)
T ss_dssp ----GTTTHHHHHHHHHHTTCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHH
T ss_pred ----hhhChHHHHHHHHHcCCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHH
Confidence 889999987 666433226675 779999999999999987 6789999965 9999999
Q ss_pred HHHhhcCCCCCc-ccCHHHHHHHH
Q 009332 307 HFLISAHYRSPL-NYSVLQLDSAS 329 (537)
Q Consensus 307 ~~ll~~~~~~~~-~fs~~~l~~~~ 329 (537)
.|+++.+|...- .+++..+....
T Consensus 348 ~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 348 AFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp HHHHHSCCCSSCEEECHHHHHHHH
T ss_pred HHHHhcCCCCCcccccHHHHHHHH
Confidence 999999887543 47888777444
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.96 E-value=1.2e-29 Score=269.73 Aligned_cols=238 Identities=18% Similarity=0.199 Sum_probs=178.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009332 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|||++||||+|+++.. ||.++++.+.|+.+|+|.|+ .+ -...|.+.|.++|++|||.++
T Consensus 7 APSPtG~lHiG~artal~n-----~l~Ar~~~G~filRieDtD~---------~R----~~~~~~~~i~~dL~wLGl~wd 68 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFN-----WLYARHRGGKFILRIEDTDR---------ER----SRPEYTENILEGLQWLGLTWD 68 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHH-----HHHHHHTTCEEEEEECCCSS---------SS----CCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHH-----HHHHHhcCCeEEEEEeeCCc---------cc----cchHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999774 55555688999999999985 11 125699999999999999965
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCC-----------------CCCC-CCCCcchhc-hhhhcCC---
Q 009332 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE-----------------KSPN-YGRLSGQRL-ENNRAGE--- 183 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~-----------------~~~~-yG~ls~~~l-~~~~~g~--- 183 (537)
+..+++|++++.+++++++|+++|+|| .|||+. .++. |+.++..+. +.+.+|.
T Consensus 69 e~~~~QS~r~~~y~~~~~~Li~~G~AY-----~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~ 143 (492)
T 2cfo_A 69 EGPYFQSDRLDLYRQAIQTLLDKGLAY-----YCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPV 143 (492)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCE
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCce-----EecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCce
Confidence 568899999999999999999999999 588765 2333 666776532 2344454
Q ss_pred -Ccccc----------------ccccCC-ccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEeccc
Q 009332 184 -RVAVD----------------SRKRNP-ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (537)
Q Consensus 184 -~~~~~----------------~~k~~~-~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~D 245 (537)
++..+ ..+.+. .||++||..+ +| |.|+|+||++|+ +|.|.+|++
T Consensus 144 iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~v----------vDD~~~gIt 205 (492)
T 2cfo_A 144 IRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVV----------VDDIAMGIT 205 (492)
T ss_dssp EEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHH----------HHHHHTTCS
T ss_pred EEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhhhh----------hhhhcCCCC
Confidence 21111 123456 7999999753 45 689999999997 344444555
Q ss_pred CcCc---cchhhHHHhh---hccCCCCceEEEEeeee-eeCCccccccCCCcccHhHHHH-hcChhhHHHHHhhcCCCC-
Q 009332 246 LIFP---HHENEIAQSC---AACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRS- 316 (537)
Q Consensus 246 l~f~---H~~~~~a~~~---a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~- 316 (537)
+++. |+.|.+.|.. +++ .+++ .|.|.+++ +.+|+|||||.||+ ++.++.+ .|.|++||.|++...+..
T Consensus 206 hviRG~D~~~~t~~q~~l~~alg-~~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~ 282 (492)
T 2cfo_A 206 DVIRGEDHIGNTPKQILLYEALG-ATPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPP 282 (492)
T ss_dssp EEEEEGGGTTHHHHHHHHHHHTT-CCCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCC
T ss_pred eEEEchhhhhCHHHHHHHHHHcC-CCCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 5554 8999998874 444 4444 56999995 55999999999996 8999987 599999999999864432
Q ss_pred ---CcccCHHHHHH
Q 009332 317 ---PLNYSVLQLDS 327 (537)
Q Consensus 317 ---~~~fs~~~l~~ 327 (537)
.--||.+.+.+
T Consensus 283 ~~~~e~~~~~e~i~ 296 (492)
T 2cfo_A 283 EGVGELFTLDLAAK 296 (492)
T ss_dssp TTTCSCCCHHHHHH
T ss_pred CccccccCHHHHHh
Confidence 33577777654
No 29
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.95 E-value=5.3e-28 Score=241.90 Aligned_cols=209 Identities=14% Similarity=0.142 Sum_probs=146.8
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009332 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|||++||||+|+++ .++|.++++.+.|+.+|+|.|++ ++ ...|.+.|.++|++|||.++
T Consensus 11 APsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~---R~----------~~~~~~~I~~dL~~LGl~~D 72 (298)
T 1nzj_A 11 APSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP---RE----------VPGAAETILRQLEHYGLHWD 72 (298)
T ss_dssp CCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG---GS----------CTTHHHHHHHHHHHTTCCCS
T ss_pred CcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch---hh----------HHHHHHHHHHHHHHcCCCCC
Confidence 69999999999999996 66666667889999999999874 11 14589999999999999976
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeee---------ecceeecCCCC-CCCCCCcc---------hhchhhhcCCCcc
Q 009332 126 TYQPRVSDHMEQIKDMITQIINNDCAYVV---------EGDVFFAVEKS-PNYGRLSG---------QRLENNRAGERVA 186 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~---------~~~v~f~~~~~-~~yG~ls~---------~~l~~~~~g~~~~ 186 (537)
...+++|++.+.+++++++|+++|+||.. .+.+|+++.+. +.+|+.+. ...+++..|. +.
T Consensus 73 ~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~-~~ 151 (298)
T 1nzj_A 73 GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGI-IH 151 (298)
T ss_dssp SCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEE-EE
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcc-cc
Confidence 66889999999999999999999999964 24466654432 44554331 1122333332 21
Q ss_pred ccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhh--hccCC
Q 009332 187 VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC--AACQD 264 (537)
Q Consensus 187 ~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~--a~~~~ 264 (537)
.+ .+.+..||++||+ .|+|+||++|++ .....|.+.+|+ |.| |+.|.+.|.. .+.+.
T Consensus 152 ~~-~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D----~l~~t~~q~~l~~alG~ 210 (298)
T 1nzj_A 152 AD-EKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GAD----LIEPTVRQISLYQLFGW 210 (298)
T ss_dssp CC-HHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGG----GHHHHHHHHHHHHHHTC
T ss_pred cC-cccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Ccc----ccccHHHHHHHHHHcCC
Confidence 11 1235579999996 479999999988 677889999999 779 8899999986 33355
Q ss_pred CCceEEEEeeee-eeCCccccccCCCcccHhHH
Q 009332 265 SNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQI 296 (537)
Q Consensus 265 ~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~dl 296 (537)
++++| +|.+++ ..+|+|||||.||+ +++++
T Consensus 211 ~~p~~-~H~pll~~~~g~KLSKR~g~~-~v~~~ 241 (298)
T 1nzj_A 211 KVPDY-IHLPLALNPQGAKLSKQNHAP-ALPKG 241 (298)
T ss_dssp CCCEE-EEECBCCC--------------CCCSS
T ss_pred CCCeE-EEeeeeECCCCCcccccCCcc-ChhcC
Confidence 66777 899998 66999999999996 55543
No 30
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.86 E-value=2e-20 Score=198.80 Aligned_cols=228 Identities=20% Similarity=0.261 Sum_probs=156.0
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009332 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
..|.+.-++|+|+|++||||+|+++++|+++|. ..| .++..|+|.|. ......+.+.+.++|
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G---~~iLRieDtD~-------------~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKG---KFILRIEDTDL-------------ERSEREYEEKLMESL 72 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTC---EEEECBCCSSC-------------CSGGGHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCC---eEEEEEecCCc-------------cccHHHHHHHHHHHH
Confidence 456778889999999999999999999999998 456 56677888873 223345888899999
Q ss_pred HHcCCCCCCCc---------cchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCC--------------CCC------
Q 009332 118 ADLQCLPPTYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNY------ 168 (537)
Q Consensus 118 ~~l~i~~~~~~---------~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~--------------~~y------ 168 (537)
++||+.+ |.. .++|++.+.+.+++++|+++|.+| .+||.... |.|
T Consensus 73 ~wlGl~~-de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY-----~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~ 146 (481)
T 2o5r_A 73 RWLGLLW-DEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAY-----YVYAYPEEIEEMREKLLSEGKAPHYSQEMFE 146 (481)
T ss_dssp HHHTCCC-SBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEE-----EECCCSTTTHHHHHHHHHTTCCCCBCGGGGT
T ss_pred HHcCCCC-CCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCee-----EecCCHHHHHHHHHHHHhcCCCCCCCCchhh
Confidence 9999985 432 478999999999999999999999 55665521 112
Q ss_pred CCCcchhc-hhhhcCCC--cccc-----------------ccccCCccceecccccCCCCccccCCCCCCCchhhhhHHH
Q 009332 169 GRLSGQRL-ENNRAGER--VAVD-----------------SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAM 228 (537)
Q Consensus 169 G~ls~~~l-~~~~~g~~--~~~~-----------------~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m 228 (537)
-.++..+. ..+..|.. +.+. ....+..||++||+ .|.|+||++|..
T Consensus 147 r~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------------DG~ptY~~a~vv- 212 (481)
T 2o5r_A 147 KFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS-------------NGLPTYNFACVV- 212 (481)
T ss_dssp TTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECT-------------TSCBCHHHHHHH-
T ss_pred hcCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEcc-------------CCCcchhhHHHH-
Confidence 11222111 11122321 0000 00112235566554 489999999873
Q ss_pred HHhhcCCCeeEEEecccCcCccchhhHHHh---hhccCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHH-hcChh
Q 009332 229 SAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPL 303 (537)
Q Consensus 229 ~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~---~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d 303 (537)
.....|.+.. +.|.| |+.+.+.|. .+++..+ +. |.|.++++ .+|+|||||.|++ +++++++ .|.|+
T Consensus 213 DD~~~githv--irG~D----~~~~t~~q~~l~~aLG~~~-p~-~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~pe 283 (481)
T 2o5r_A 213 DDMLMEITHV--IRGDD----HLSNTLRQLALYEAFEKAP-PV-FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPE 283 (481)
T ss_dssp HHHHTTCSEE--EEEGG----GHHHHHHHHHHHHHTTCCC-CE-EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHH
T ss_pred HHHhCCCCeE--EEChh----HHHhHHHHHHHHHHcCCCC-Ce-EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHH
Confidence 3445565544 47789 766666554 5555443 44 58988854 4899999999997 9999998 48888
Q ss_pred hHHHHHhhc
Q 009332 304 ALRHFLISA 312 (537)
Q Consensus 304 ~lR~~ll~~ 312 (537)
+++.|+...
T Consensus 284 al~~~l~~l 292 (481)
T 2o5r_A 284 ALVNYLALL 292 (481)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHh
Confidence 888777664
No 31
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.84 E-value=3.1e-20 Score=196.29 Aligned_cols=235 Identities=16% Similarity=0.169 Sum_probs=167.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009332 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|+++....++|. +...|+..|+|.|.+ .....|.+.+.++|++||+.+
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dl~wlGl~w- 67 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR-----NGGRFIVRIEDTDRA-------------RYVPGAEERILAALKWLGLSY- 67 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH-----TTCEEEECBCCCCTT-------------SCCTTHHHHHHHHHHHTTCCC-
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCCc-------------ccChHHHHHHHHHHHHcCCCC-
Confidence 6999999999999999877777773 556899999999852 113358899999999999985
Q ss_pred CCc---------cchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC-----------CC-CCCCCcchhch-hhhcCC
Q 009332 126 TYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------SP-NYGRLSGQRLE-NNRAGE 183 (537)
Q Consensus 126 ~~~---------~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~-----------~~-~yG~ls~~~l~-~~~~g~ 183 (537)
|.- .++|++.+.+.+++++|+++|+|| .+||... ++ .|..++..+.. .+..|.
T Consensus 68 d~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY-----~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~ 142 (468)
T 1j09_A 68 DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAY-----RAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGE 142 (468)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEE-----EECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeE-----EcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCC
Confidence 544 589999999999999999999999 6666441 11 13345543222 122343
Q ss_pred Cc--c--c----------------cccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEec
Q 009332 184 RV--A--V----------------DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (537)
Q Consensus 184 ~~--~--~----------------~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G 243 (537)
.. . . .....+..||++||. .|.|+||++|+. .....|.+..|+ |
T Consensus 143 ~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~-------------dg~PtY~~a~vv-DD~~~githvir--G 206 (468)
T 1j09_A 143 PHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS-------------DGYPTYHLANVV-DDHLMGVTDVIR--A 206 (468)
T ss_dssp CCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--E
T ss_pred CceEEEecCCCCceEEEeccceeEeecccCCCCeEEEec-------------CCCeeehhHHHH-HHHHCCCCeEEE--C
Confidence 11 0 0 000122357777765 379999999875 345567666655 6
Q ss_pred ccCcCccchhhHHHh---hhccCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHH-hcChhhHHHHHhhcCCCCC-
Q 009332 244 IDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRSP- 317 (537)
Q Consensus 244 ~Dl~f~H~~~~~a~~---~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~~- 317 (537)
.| |+.+.+.|. .+++..+ +.| .|.++++ .+|+|||||.|++ ++.++.+ +|.|++||.|++...+..+
T Consensus 207 ~D----~~~~t~~q~~l~~alg~~~-p~~-~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~ 279 (468)
T 1j09_A 207 EE----WLVSTPIHVLLYRAFGWEA-PRF-YHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPD 279 (468)
T ss_dssp GG----GGGGHHHHHHHHHHHTCCC-CEE-EEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTT
T ss_pred hh----hhhhHHHHHHHHHHcCCCC-CeE-EEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCcc
Confidence 69 777777665 4554443 445 7888764 4899999999997 8999987 5999999999987644432
Q ss_pred --cccCHHHHHH
Q 009332 318 --LNYSVLQLDS 327 (537)
Q Consensus 318 --~~fs~~~l~~ 327 (537)
..|+.+.+.+
T Consensus 280 ~~~~~~~~el~~ 291 (468)
T 1j09_A 280 GREIFTLEEFIQ 291 (468)
T ss_dssp CCSCCCHHHHHH
T ss_pred cccCCCHHHHHh
Confidence 4588776654
No 32
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.83 E-value=1.7e-19 Score=190.35 Aligned_cols=237 Identities=21% Similarity=0.228 Sum_probs=160.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009332 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|+++..++++| ++...|+.+|+|.|++ .....|.+.|.++|++|||.++
T Consensus 31 APSPTG~lHiG~~rtal~n~l~Ar-----~~~G~filRieDtD~~-------------R~~~~~~~~i~~dl~wlGl~~d 92 (490)
T 4g6z_A 31 APSPTGFIHLGNIRSALYPWAFAR-----KMKGTFVLRIEDTDVE-------------RSSQEAVDAILEGMAWLGLDYD 92 (490)
T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEeCCCCcc-------------cccHHHHHHHHHHHHHcCCCCC
Confidence 599999999999999988777776 4678999999999861 1235799999999999999964
Q ss_pred CCccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCC--------------CCC----CCCcchhchhhhcCCCc--
Q 009332 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNY----GRLSGQRLENNRAGERV-- 185 (537)
Q Consensus 126 ~~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~--------------~~y----G~ls~~~l~~~~~g~~~-- 185 (537)
....++|+|++.+++++++|+++|+|| .|||.... |.| -.++.........|...
T Consensus 93 ~~~~~qS~r~~~y~~~~~~Li~~G~aY-----~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~ 167 (490)
T 4g6z_A 93 EGPYYQMQRMDRYREVLAQMQEKGLVY-----PCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVL 167 (490)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEE-----EECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEE
T ss_pred CCCcccccCHHHHHHHHHHHHHCCCEE-----eCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceE
Confidence 445799999999999999999999999 77776531 111 11221111111111110
Q ss_pred ccccc------------------ccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCc
Q 009332 186 AVDSR------------------KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (537)
Q Consensus 186 ~~~~~------------------k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~ 247 (537)
.+... -..-.||++.| ..|.|.||++|.. -....|.+..|. |.|
T Consensus 168 R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R-------------~DG~ptY~lA~vV-DD~~mgIThViR--G~D-- 229 (490)
T 4g6z_A 168 RFRNPLTGTVAWDDAVKGRVEISNEELDDLVVAR-------------PDGTPMYNFCVVV-DDLDMGITHVIR--GDD-- 229 (490)
T ss_dssp EECCCCSSEEEEEETTTEEEEEEGGGCCCCEEEC-------------TTSCBCHHHHHHH-HHHHTTCCEEEE--EGG--
T ss_pred EEecCCCCcEEEEEeeeeeeeeccccCCCeEEEe-------------eCCCccchhHHHH-HHHhcCCCEEEe--ccc--
Confidence 00000 00002333333 2478999998754 234456665665 679
Q ss_pred CccchhhHHHh---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHH-hcChhhHHHHHhhcCC--CCCccc
Q 009332 248 FPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY--RSPLNY 320 (537)
Q Consensus 248 f~H~~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~--~~~~~f 320 (537)
|..+.+.|. .|++..+ +.| .|..+++. +|+|||||.|. +++.++.+ +|.|++|+-|++...+ ...--|
T Consensus 230 --~l~~tprq~~l~~aLG~~~-P~f-~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~ 304 (490)
T 4g6z_A 230 --HVNNTPRQINILRALGGEV-PVY-AHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIF 304 (490)
T ss_dssp --GGGGHHHHHHHHHHTTCCC-CEE-EEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCC
T ss_pred --cccChHHHHHHHHHcCCCC-CeE-EEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCcccc
Confidence 888877775 4454444 445 88888765 89999999997 68998886 5999999999987533 333458
Q ss_pred CHHHHHHH
Q 009332 321 SVLQLDSA 328 (537)
Q Consensus 321 s~~~l~~~ 328 (537)
|.+.+.+.
T Consensus 305 s~~eli~~ 312 (490)
T 4g6z_A 305 TREQFVEW 312 (490)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHhh
Confidence 88777654
No 33
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.82 E-value=3.4e-19 Score=189.10 Aligned_cols=230 Identities=18% Similarity=0.214 Sum_probs=162.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009332 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|+++....++|. +...++..|+|.|.+ .....+.+.+.++|++|||.+
T Consensus 31 APsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~w- 91 (488)
T 3afh_A 31 APSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESLRWCGLDW- 91 (488)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCTT-------------TCCHHHHHHHHHHHHHTTCCC-
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCcc-------------cccHHHHHHHHHHHHHcCCCC-
Confidence 6999999999999999877777764 567899999999752 223458899999999999984
Q ss_pred CCc---------cchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCC------CCCCCCcchhchhhhcCCC--c---
Q 009332 126 TYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------PNYGRLSGQRLENNRAGER--V--- 185 (537)
Q Consensus 126 ~~~---------~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~------~~yG~ls~~~l~~~~~g~~--~--- 185 (537)
|.- .++|++.+.+.+++++|+++|+|| .+||.... |.|..-. ..+..|.. +
T Consensus 92 De~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY-----~c~ct~eel~~~~~~~Y~~~~----~~~~~G~~~~iR~k 162 (488)
T 3afh_A 92 DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY-----YVVYDKEDPSKELFTTYEYPH----EYKEKGHPVTIKFK 162 (488)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EEEECSSSTTSEEEEESSCCH----HHHHTTCCEEEEEC
T ss_pred CcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeE-----ecCCCHHHHHhhcCCCCCchh----hHHhcCCCceEEEE
Confidence 553 489999999999999999999999 66765531 1121110 01111211 0
Q ss_pred ------c--------ccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcCccc
Q 009332 186 ------A--------VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251 (537)
Q Consensus 186 ------~--------~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~ 251 (537)
. +.....+..||+++|+ .|.|.||++|.. .....|.+..|+ |.| |+
T Consensus 163 ~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------DG~PtY~lA~vV-DD~~mgIThViR--G~D----~l 222 (488)
T 3afh_A 163 VLPGKTSFEDLLKGYMEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVFR--GED----HL 222 (488)
T ss_dssp CCSSEEEEEETTTEEEEEEGGGSCCEEEECT-------------TSCBCHHHHHHH-HHHHTTCSEEEE--EGG----GG
T ss_pred CCCCceeEEeccceeEeecCCCCCCeEEEec-------------CCCeehhhHHHH-HHHhcCCCEEEE--chh----hh
Confidence 0 0000122347777775 488999999875 345567666665 669 88
Q ss_pred hhhHHHh---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHH-hcChhhHHHHHhhcCCCC--CcccCHHH
Q 009332 252 ENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRS--PLNYSVLQ 324 (537)
Q Consensus 252 ~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~--~~~fs~~~ 324 (537)
.+.+.|. .+++..+ +.| .|..+++. +|+|||||.|+ +++.++.+ .|.|++|+.|++...+.. +-.||.+.
T Consensus 223 ~~tp~q~~l~~aLG~~~-P~f-~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e 299 (488)
T 3afh_A 223 SNTPKQLMIYEAFGWEA-PVF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEE 299 (488)
T ss_dssp GGHHHHHHHHHHHTCCC-CEE-EEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHH
T ss_pred hCHHHHHHHHHHcCCCC-CeE-EEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHH
Confidence 8888776 3444443 444 88888754 89999999999 68999987 599999999998754432 14566665
Q ss_pred HH
Q 009332 325 LD 326 (537)
Q Consensus 325 l~ 326 (537)
+.
T Consensus 300 ~i 301 (488)
T 3afh_A 300 KL 301 (488)
T ss_dssp HG
T ss_pred HH
Confidence 43
No 34
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.82 E-value=1.3e-19 Score=196.62 Aligned_cols=224 Identities=18% Similarity=0.203 Sum_probs=159.7
Q ss_pred cceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 009332 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (537)
Q Consensus 39 ~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (537)
+|..=.. |+|+|++||||+|++++.+.++|. |...|+..|+|.|. ..-...+.+.+.++|+
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~-----~~G~~ilRieDtD~-------------~r~~~~~~~~I~~dL~ 189 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDT-------------ERSSREYEQQILESLR 189 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCS-------------SSCCHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh-----cCCcEEEEecCcCh-------------hhccHHHHHHHHHHHH
Confidence 4555555 999999999999999999999985 55678999999773 2234468899999999
Q ss_pred HcCCCCCCCc---------cchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC------CCCCCCCcchhchhhhcCC
Q 009332 119 DLQCLPPTYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------SPNYGRLSGQRLENNRAGE 183 (537)
Q Consensus 119 ~l~i~~~~~~---------~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~------~~~yG~ls~~~l~~~~~g~ 183 (537)
+|||.+ |.- .++|++.+.+.+++++|+++|+|| .+||... .|.|..-. ..+..|.
T Consensus 190 wlGl~~-D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY-----~c~ct~~el~~~~~~~Y~~~~----~~~~~g~ 259 (592)
T 3al0_C 190 WCGLDW-DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY-----YVVYDKEDPSKELFTTYEYPH----EYKEKGH 259 (592)
T ss_dssp HTTCCC-SBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEE-----EEEEETTEEEEECCCCSSCCH----HHHHTTC
T ss_pred HcCCCC-CCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCce-----EecCCHHHHHhhcCCCCCcHH----HHhhcCC
Confidence 999984 553 389999999999999999999999 6666542 12222110 0111121
Q ss_pred C-----------cc--------ccccccCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEEEecc
Q 009332 184 R-----------VA--------VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (537)
Q Consensus 184 ~-----------~~--------~~~~k~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih~~G~ 244 (537)
. +. +.....+..||++||. .|.|+||++|.. .....|.+..|+ |.
T Consensus 260 ~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dg~ptY~~a~vv-DD~~~githvir--G~ 323 (592)
T 3al0_C 260 PVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVFR--GE 323 (592)
T ss_dssp CEEEEECCCSSCCEECCTTTCSEECCSSSSCCEEEECT-------------TSCCCHHHHHHH-HHHHTTCSBCCE--EG
T ss_pred CceEEEECCCCCceeeecccceeeeccccCCCeEEEcC-------------CCCeehhhHHHH-HHHhcCCCeEEE--ch
Confidence 0 00 0000123357777775 488999999874 344567666665 66
Q ss_pred cCcCccchhhHHHh---hhccCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHH-hcChhhHHHHHhhcCC
Q 009332 245 DLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY 314 (537)
Q Consensus 245 Dl~f~H~~~~~a~~---~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~ 314 (537)
| |+.+.+.|. .+++.. ++.| .|..+++ .+|+|||||.|+ +++.++.+ .|.|++||.|++...+
T Consensus 324 D----~~~~t~~q~~l~~alg~~-~P~~-~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 324 D----HLSNTPKQLMIYEAFGWE-APVF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp G----GGGGHHHHHHHHTTTTCC-CCBC-CEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred h----hHhCHHHHHHHHHHhCCC-CCeE-EEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 9 887877776 344433 3445 7877774 489999999999 69999988 5999999999987544
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.70 E-value=5.7e-16 Score=164.41 Aligned_cols=235 Identities=17% Similarity=0.147 Sum_probs=156.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009332 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||+|+++....++|.. . -.|+.-|+|.|. ......+.+.+.++|++||+.++
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~~--g---G~fiLRieDtD~-------------~R~~~~~~~~I~~~L~wlGl~wD 73 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARHT--G---GTFVFRIEDTDA-------------QRDSEESYLALLDALRWLGLDWD 73 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHHH--T---CEEEECBCCCCT-------------TTCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHHc--C---CEEEEEECcCCC-------------cccChHHHHHHHHHHHHcCCCcC
Confidence 48899999999999999999998853 3 478889999864 22334588999999999999864
Q ss_pred C--------CccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC-------------CCCCC----CCcchhchh-h
Q 009332 126 T--------YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYG----RLSGQRLEN-N 179 (537)
Q Consensus 126 ~--------~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~-------------~~~yG----~ls~~~l~~-~ 179 (537)
. ...++|++.+.+.+++++|+++|.|| .+||... -|.|. .++..+... .
T Consensus 74 egp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY-----~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~ 148 (498)
T 2ja2_A 74 EGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAY-----HAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL 148 (498)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH
T ss_pred CCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeE-----EeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh
Confidence 3 25689999999999999999999999 7777542 12222 233322111 1
Q ss_pred hcCCC--ccccccc-----------------cCCccceecccccCCCCccccCCCCCCCchhhhhHHHHHhhcCCCeeEE
Q 009332 180 RAGER--VAVDSRK-----------------RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIH 240 (537)
Q Consensus 180 ~~g~~--~~~~~~k-----------------~~~~df~lwk~~~~g~~~w~~~wG~g~PgWhiecs~m~~~~~g~~~dih 240 (537)
..|.. +.+.-.. ..-.||++.| ..|.|.||++|..- ....|.+..|
T Consensus 149 ~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R-------------~Dg~ptY~lA~vVD-D~~mgithvi- 213 (498)
T 2ja2_A 149 AEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTR-------------ASGDPLYTLVNPCD-DALMKITHVL- 213 (498)
T ss_dssp HTTCCCEEEECCCSSCEEEEETTTEEEEECTTCSCCCBSBC-------------TTSCBCHHHHHHHH-HHHTTCCEEE-
T ss_pred ccCCCceEEEECCCCceEEEecccceEeecccccCcceeEc-------------cCCCcchhhHHHHH-hhhcCCCEEE-
Confidence 22332 1110000 0011333333 35889999987643 3445555544
Q ss_pred EecccCcCccchhhHHH---hhhc-----cCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHH-hcChhhHHHHHh
Q 009332 241 GGGIDLIFPHHENEIAQ---SCAA-----CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLI 310 (537)
Q Consensus 241 ~~G~Dl~f~H~~~~~a~---~~a~-----~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll 310 (537)
-|.| |+.+.+.| ..++ +.. .+.| .|..+++ .+|+|||||.|+ +++.++.+ .|.|++++.|+.
T Consensus 214 -RG~D----~~~~t~~q~~l~~aL~~~g~g~~-~P~~-~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~ 285 (498)
T 2ja2_A 214 -RGED----LLPSTPRQLALHQALIRIGVAER-IPKF-AHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLA 285 (498)
T ss_dssp -EEGG----GGGGHHHHHHHHHHHHHTTSCCC-CCEE-EEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHH
T ss_pred -EChh----hhhccHHHHHHHHHHHhhcCCCC-CCeE-EEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHH
Confidence 6679 77666544 3455 433 3455 7877765 489999999999 58999987 599999999998
Q ss_pred hcCCC---CCcccCHHHHH
Q 009332 311 SAHYR---SPLNYSVLQLD 326 (537)
Q Consensus 311 ~~~~~---~~~~fs~~~l~ 326 (537)
...+. ..-.||.+.+.
T Consensus 286 ~lG~s~~~~~e~~s~~eli 304 (498)
T 2ja2_A 286 LLGWSIADDHDLFGLDEMV 304 (498)
T ss_dssp TSSCCSCSSCCCCCHHHHH
T ss_pred HhCCCCCcccccCCHHHHH
Confidence 75332 12345555543
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.68 E-value=1.1e-15 Score=163.97 Aligned_cols=248 Identities=19% Similarity=0.217 Sum_probs=158.0
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Q 009332 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~~ 125 (537)
.|+|+|++||||||++++...++|. +.-.|+.-|+|.|. ......|.+.+.++|++|||.++
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~-----~~G~fiLRieDtD~-------------~R~~~~~~~~I~~~L~wlGl~wD 91 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS-----CGGKFLLRIEDTDQ-------------SRYSPEAENDLYSSLKWLGISFD 91 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH-----TTCEEEECBCCCCT-------------TSCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CcCCHHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999988875 34589999999884 12224588999999999999853
Q ss_pred CC--------ccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCC--------------CCC----CCCCcchhchhh
Q 009332 126 TY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPN----YGRLSGQRLENN 179 (537)
Q Consensus 126 ~~--------~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~--------------~~~----yG~ls~~~l~~~ 179 (537)
.. -.++|++.+.+.+++++|+++|.|| +|||... .|. |-.++..+....
T Consensus 92 e~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY-----~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~ 166 (512)
T 4gri_A 92 EGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAY-----YCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENA 166 (512)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHH
T ss_pred cCCccCCCCCCccccchHHHHHHHHHHHHHcCCcc-----ccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhh
Confidence 21 1278999999999999999999999 7887641 122 222333222211
Q ss_pred -hcCCCccccccccCCcc-ceecccccCCCCccc------cC---CCCCCCchhhhhHHHHHhhcCCCeeEEEecccCcC
Q 009332 180 -RAGERVAVDSRKRNPAD-FALWKAAKAGEPSWD------SP---WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 248 (537)
Q Consensus 180 -~~g~~~~~~~~k~~~~d-f~lwk~~~~g~~~w~------~~---wG~g~PgWhiecs~m~~~~~g~~~dih~~G~Dl~f 248 (537)
..|....+. .| .|.+ -..|...-.|.+.+. .. -..|.|.||++|+.- ....|.+..|. |.|
T Consensus 167 ~~~~~~~~~R-~k-~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVD-D~~mgITHViR--G~D--- 238 (512)
T 4gri_A 167 LIKKIKPVVR-FK-IPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVD-DYLMKITHVLR--AQE--- 238 (512)
T ss_dssp HHTTCCCEEE-EC-CCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHH-HHHTTCSEEEE--EGG---
T ss_pred hhhhccceee-ec-ccccCCceeeccccceEEecccccCCceEEEecCCcccccccceec-ccccCCceecc--ccc---
Confidence 112110000 00 0000 001110000111110 00 124789999987543 33455554554 559
Q ss_pred ccchhhHHHh---hhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHH-hcChhhHHHHHhhc--CCCC-Cccc
Q 009332 249 PHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA--HYRS-PLNY 320 (537)
Q Consensus 249 ~H~~~~~a~~---~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~--~~~~-~~~f 320 (537)
|..+.+.|. .+++.+ ++.| .|...++. +|+|+||+.|. .++.++.+ +|-|+++.-|++.- ++.. .--|
T Consensus 239 -~l~sTp~q~~l~~alg~~-~P~y-~H~pli~~~~g~kLSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eif 314 (512)
T 4gri_A 239 -WVSSGPLHVLLYKAFKWK-PPIY-CHLPMVMGNDGQKLSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFF 314 (512)
T ss_dssp -GGGGHHHHHHHHHHHTCC-CCEE-EEECCCBCTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCC
T ss_pred -cccccHHHHHHHHHcCCC-CCeE-EecchhccccccccCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhh
Confidence 766766554 444444 4445 88888876 79999999998 57888776 59999999998764 3332 3568
Q ss_pred CHHHHHHH
Q 009332 321 SVLQLDSA 328 (537)
Q Consensus 321 s~~~l~~~ 328 (537)
|.+.|.+.
T Consensus 315 s~~eli~~ 322 (512)
T 4gri_A 315 SKNDLEQF 322 (512)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 98888765
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.71 E-value=1.4e-07 Score=95.56 Aligned_cols=69 Identities=25% Similarity=0.260 Sum_probs=49.9
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009332 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++.++|.|+.. |.+...-....++..+ + +.+|+.++. ++|+|||||.||.|++.| +|+++|..+.+.
T Consensus 170 ~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~-p-~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 170 GVDLAVGGIDQRK-IHMLARENLPRLGYSS-P-VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCCEEEechhhHH-HHHHHHHHHHhcCCCC-c-eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 6789999999755 5443333333333333 3 347777774 499999999999999987 599999999885
No 38
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.39 E-value=6e-07 Score=91.15 Aligned_cols=209 Identities=15% Similarity=0.110 Sum_probs=108.3
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009332 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
....||.-|+|.+||||..+++. -.+.|...|+++.++. .|.-. ++.+ ..+|.. ...+..+...++.++
T Consensus 13 ~~v~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~~I--aD~ha-~t~~----~~dp~~-~~~~~~~~~~~~lA~ 81 (340)
T 2g36_A 13 MRILSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFYFV--ADWHA-LTTH----YDDVSK-LKEYTRDLVRGFLAC 81 (340)
T ss_dssp CEEEEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEEEE--CHHHH-HHHH----TTCCTT-HHHHHHHHHHHHHHT
T ss_pred CeEEEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEEEE--eccee-ecCC----CCCHHH-HHHHHHHHHHHHHHh
Confidence 35567888999999999876542 3344566899998874 44322 2211 245554 445666777888889
Q ss_pred CCCCCC-CccchhhhHHHHHHHHHHHHHCCceeeeecceeecCCCCCCCCCCcchhchhhhcCCCccccccccCCcccee
Q 009332 121 QCLPPT-YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFAL 199 (537)
Q Consensus 121 ~i~~~~-~~~r~s~~~~~~~~~i~~L~~~G~ay~~~~~v~f~~~~~~~yG~ls~~~l~~~~~g~~~~~~~~k~~~~df~l 199 (537)
|+.+.. .+...|+.. ...++...| . +.-..|.|.. .. .+|..
T Consensus 82 Gldp~k~~if~qS~~~-~~~el~~~l-~----------------~~~~v~~l~r-----~~--------~~k~~------ 124 (340)
T 2g36_A 82 GIDPEKSVIFVQSGVK-EHAELALLF-S----------------MIVSVSRLER-----VP--------TYKEI------ 124 (340)
T ss_dssp TCCTTTSEEEEGGGCT-HHHHHHHHH-H----------------TTSCHHHHHT-----CH--------HHHTC------
T ss_pred CCChhHeEEEECCchH-HHHHHHHHH-H----------------ccCCHHHHHH-----hH--------HHHhH------
Confidence 997421 334445432 222222111 1 1111111111 00 00100
Q ss_pred cccccCCCCccccCCCCCCC-chhhhhHHHHHhhcCCCeeEEEecccCcCccchhhHHHhhhc---cC---CCCceEEEE
Q 009332 200 WKAAKAGEPSWDSPWGPGRP-GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMH 272 (537)
Q Consensus 200 wk~~~~g~~~w~~~wG~g~P-gWhiecs~m~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~---~~---~~~~~~~~h 272 (537)
+.... ++.+.+ |-+.--.-|+..++-...++..+|.|+.. |.+...-....+ .+ ..|.-+..|
T Consensus 125 ~~r~~---------~~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~ 194 (340)
T 2g36_A 125 KSELN---------YKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSR 194 (340)
T ss_dssp ----------------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECC
T ss_pred HHHhc---------cCCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhcc
Confidence 00000 000111 11111122344444456899999999654 554332222222 12 233333334
Q ss_pred eeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009332 273 NGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 273 ~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
+.+|.- +|.|||||.||.|++.| +|+.++=.+.+.
T Consensus 195 ~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~Ki~~a 230 (340)
T 2g36_A 195 VPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQTILRM 230 (340)
T ss_dssp SCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHHHHHTC
T ss_pred ccccCCCCccccCCCCCCeEeeeC-----CHHHHHHHHHhC
Confidence 455543 89999999999999988 888888888775
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=7.1e-06 Score=85.02 Aligned_cols=69 Identities=19% Similarity=0.057 Sum_probs=35.6
Q ss_pred CCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeee-eC-CccccccCCCc-ccHhHHHHhcChhhHHHHHhh
Q 009332 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-NEKMSKSLGNF-FTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 235 ~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~-G~KMSKS~Gn~-i~~~dll~~~~~d~lR~~ll~ 311 (537)
...++.++|.|+.. |.+..+-....++..+ + +.+|+.+|. ++ |+|||||.||. |++.| +|+.++=-+.+
T Consensus 181 ~~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~~i~kKI~k 252 (394)
T 2dlc_X 181 LDVDCQFGGVDQRK-IFVLAEENLPSLGYKK-R-AHLMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPKQVKKKINS 252 (394)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCCC----------CCSCBTTC-----CHHHHHHHHHH
T ss_pred hCCCEEecCccHHH-HHHHHHHHHHHcCCCC-C-EEEecccccCCCCCCcCCCCCCCCEEeccC-----CHHHHHHHHHH
Confidence 46789999999543 4433333333333333 3 336767765 47 99999999996 88876 36666666665
No 40
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.00 E-value=1.7e-05 Score=81.24 Aligned_cols=85 Identities=9% Similarity=-0.057 Sum_probs=48.4
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009332 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
....||--|+|.+||||+.+.. ..+.|...|+++++..+ |+-..+-. ..|.+++++. .+...+..++.++
T Consensus 36 ~~iy~G~~PTg~lHlG~l~~l~----~~~~lQ~~G~~~~~~ia--D~~a~~~~---ps~~~~e~i~-~~~~~~~~~~la~ 105 (364)
T 2cya_A 36 IKGYIGYEPSGVAHIGWLVWMY----KVKDLVEAGVDFSVLEA--TWHAYIND---KLGGDMDLIR-AAARIVRRVMEAA 105 (364)
T ss_dssp CEEEEEECCCSSCBTHHHHHHH----HHHHHHHTTCEEEEEEC--HHHHHHTT---GGGGCHHHHH-HHHHHHHHHHHHT
T ss_pred CEEEeccCCCCCccHhHHHHHH----HHHHHHHCCCCEEEEEe--CcchhhCC---CCCCCHHHHH-HHHHHHHHHHHHh
Confidence 3445666677999999944432 33445557999876644 22111110 1133554443 4557788899999
Q ss_pred CCCCCC-CccchhhhH
Q 009332 121 QCLPPT-YQPRVSDHM 135 (537)
Q Consensus 121 ~i~~~~-~~~r~s~~~ 135 (537)
|+.+.. .+...|+..
T Consensus 106 G~dp~k~~i~~qS~~~ 121 (364)
T 2cya_A 106 GVPVERVRFVDAEELA 121 (364)
T ss_dssp TCCGGGCEEEEHHHHH
T ss_pred CCCccceEEEecchhh
Confidence 997421 244555443
No 41
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.96 E-value=4.1e-06 Score=86.13 Aligned_cols=69 Identities=20% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeee-eCCccccccCCC-cccHhHHHHhcChhhHHHHHhh
Q 009332 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 235 ~~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~ 311 (537)
...++..+|.|+.. |.+.-+-....++..+ + +.+|+.++. ++|+|||||.|| .|++.| +|+.++=.+.+
T Consensus 177 ~~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gldG~KMSKS~~ns~I~L~d-----~p~~i~kKi~~ 247 (372)
T 1n3l_A 177 LKVDAQFGGIDQRK-IFTFAEKYLPALGYSK-R-VHLMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDVKKKLKK 247 (372)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCSSCC-------CCSCBTTC-----CHHHHHHHHHT
T ss_pred hcCCEEEcChhHHH-HHHHHHHHHHHcCCCC-C-EEEecCccCCCCcccccCCCCCCeEeccC-----CHHHHHHHHHH
Confidence 35689999999543 4433333333333233 3 336666665 489999999999 798876 37778877766
No 42
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.94 E-value=2.5e-05 Score=78.51 Aligned_cols=81 Identities=10% Similarity=-0.026 Sum_probs=48.5
Q ss_pred eEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009332 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
....||--|+|.+||||+.+.. ..+.++..|+++++..+ |.-..+ .. ..++++ .+++...+..++.++
T Consensus 29 ~~vy~G~~PTg~lHlGhl~~l~----~~~~lQ~~g~~~~~~i~--D~~a~~-~~----~~~~e~-i~~~~~~~~~~~~a~ 96 (314)
T 2zp1_A 29 KSAYIGFEPSGKIHLGHYLQIK----KMIDLQNAGFDIIILLA--DLAAYL-NQ----KGELDE-IRKIGDYNKKVFEAM 96 (314)
T ss_dssp EEEEEEECCCSSCBHHHHHHHH----HHHHHHHTTEEEEEEEC--HHHHHH-TT----CCCHHH-HHHHHHHHHHHHHHT
T ss_pred CEEEEccCCCCCcchhhHHHHH----HHHHHHHCCCCEEEEEe--cceEec-CC----CCCHHH-HHHHHHHHHHHHHhc
Confidence 4455666677999999944432 34455567988876543 211111 10 123443 455678889999999
Q ss_pred CCCCCCCccchhhhH
Q 009332 121 QCLPPTYQPRVSDHM 135 (537)
Q Consensus 121 ~i~~~~~~~r~s~~~ 135 (537)
|+. ..+...|+..
T Consensus 97 G~d--~~~~~qs~~~ 109 (314)
T 2zp1_A 97 GLK--AKYVYGSEFQ 109 (314)
T ss_dssp TCC--CEEEEGGGTT
T ss_pred CCC--eEEEECChhh
Confidence 986 4555566543
No 43
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=97.89 E-value=0.0003 Score=71.24 Aligned_cols=71 Identities=23% Similarity=0.142 Sum_probs=44.9
Q ss_pred CCeeEEEecccCcCccchhhHHHhhhc---cCC--CCceEEEEe---eeee-eCC-ccccccCCCcccHhHHHHhcChhh
Q 009332 235 SKFDIHGGGIDLIFPHHENEIAQSCAA---CQD--SNVSYWMHN---GHVT-NNN-EKMSKSLGNFFTIRQITERYHPLA 304 (537)
Q Consensus 235 ~~~dih~~G~Dl~f~H~~~~~a~~~a~---~~~--~~~~~~~h~---g~v~-~~G-~KMSKS~Gn~i~~~dll~~~~~d~ 304 (537)
...++..+|.|+.. |.+...-....+ .+. +.+.. +|+ .+|. ++| +|||||.||.|++.| +|+.
T Consensus 140 ~~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~-~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-----~p~~ 212 (337)
T 2el7_A 140 YKADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQA-LLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-----PEES 212 (337)
T ss_dssp TTCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEE-ECCTTSCCCBCTTSSSBCCTTTTCCCBSSS-----CHHH
T ss_pred hCCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCee-ecccccccccCCCCccccCCCCCCeeeCcC-----CHHH
Confidence 46799999999654 554432222211 121 22333 333 3443 389 999999999999877 4888
Q ss_pred HHHHHhhc
Q 009332 305 LRHFLISA 312 (537)
Q Consensus 305 lR~~ll~~ 312 (537)
++=.+.+.
T Consensus 213 i~~Ki~~a 220 (337)
T 2el7_A 213 IWQKIQHL 220 (337)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 88877775
No 44
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=97.83 E-value=2.5e-05 Score=80.62 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=47.8
Q ss_pred CeeEEEecccCcCccchhhH--HHhh-hcc---C-----CC----CceEEEEeeeeee-CCccccccCCCcccHhHHHHh
Q 009332 236 KFDIHGGGIDLIFPHHENEI--AQSC-AAC---Q-----DS----NVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 299 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~--a~~~-a~~---~-----~~----~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~ 299 (537)
..++..||.|. .+|.+.-+ +... ..+ + .| ...+-+++.+|.- +|+|||||.||.|++.| +.
T Consensus 232 ~~~i~~gG~DQ-~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQ-YGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ 308 (392)
T ss_dssp CEEEEEECTTC-HHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST--TT
T ss_pred CccEEecCcch-HhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC--CC
Confidence 47999999996 44554322 2221 001 0 00 1224466666654 99999999999999987 45
Q ss_pred cChhhHHHHHhhc
Q 009332 300 YHPLALRHFLISA 312 (537)
Q Consensus 300 ~~~d~lR~~ll~~ 312 (537)
-+|+.++=++++.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 6788888777765
No 45
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.81 E-value=8.7e-05 Score=76.24 Aligned_cols=75 Identities=9% Similarity=0.027 Sum_probs=47.5
Q ss_pred CcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009332 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 38 ~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
|+.....+|--|+|++||||.- .+..+.+ |.. .|..|.++ ++|.. +.. ....+++++. ++...+..+
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v---~~~~~~~-lQ~~~g~~v~i~--I~D~~-a~~----~r~~~~e~i~-~~~~~~~~~ 147 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYI---TLEFARY-LQDAFNIQVIIQ--ILDDI-KVL----NREATINEAS-KMSNDLMKY 147 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHH---HHHHHHH-HHHHHCCEEEEE--ECHHH-HHH----TTSCCHHHHH-HHHHHHHHH
T ss_pred CCCeEEEeccCCCCCccHHHHH---HHHHHHH-HHHhcCCeEEEE--eCchH-Hhh----cCCCCHHHHH-HHHHHHHHH
Confidence 4444555778888999999944 4444444 544 58777777 66653 222 1225665554 455577888
Q ss_pred HHHcCCCC
Q 009332 117 MADLQCLP 124 (537)
Q Consensus 117 l~~l~i~~ 124 (537)
+-++|+.+
T Consensus 148 ~lA~GlDp 155 (386)
T 3hzr_A 148 ILAFGFNE 155 (386)
T ss_dssp HHHTCCCG
T ss_pred HHHcCCCC
Confidence 88999974
No 46
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.76 E-value=1.1e-05 Score=81.11 Aligned_cols=78 Identities=26% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHhhcCCCeeEEEecccCcCccchh--hHHHhhhc-cC---CCCceEE-EEeeeee-eCCccccccCCCcccHhHHHHhc
Q 009332 229 SAHYLSSKFDIHGGGIDLIFPHHEN--EIAQSCAA-CQ---DSNVSYW-MHNGHVT-NNNEKMSKSLGNFFTIRQITERY 300 (537)
Q Consensus 229 ~~~~~g~~~dih~~G~Dl~f~H~~~--~~a~~~a~-~~---~~~~~~~-~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~ 300 (537)
+..++-...++..+|.|... |.+. ++|..... .+ ..|..++ .++.+|. ++|+|||||.+|.|++.|
T Consensus 132 AaDil~~~~~~vpvG~DQ~~-hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d----- 205 (322)
T 3tzl_A 132 AADILLFDTRIVPVGKDQIQ-HVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS----- 205 (322)
T ss_dssp HHHHHHTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----
T ss_pred HHHHHHhCCcEEEeccchHH-HHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----
Confidence 33333346799999999654 5543 33332211 11 1222221 0133443 389999999999999876
Q ss_pred ChhhHHHHHhhc
Q 009332 301 HPLALRHFLISA 312 (537)
Q Consensus 301 ~~d~lR~~ll~~ 312 (537)
+|+.++=.+.+.
T Consensus 206 ~p~~i~~KI~~a 217 (322)
T 3tzl_A 206 SEKTLKKQISSI 217 (322)
T ss_dssp CHHHHHHHHHTC
T ss_pred CHHHHHHHHHhc
Confidence 677787777663
No 47
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=97.71 E-value=1.9e-05 Score=82.27 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=49.1
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeee-CCccccccCCC-cccHhHHHHhcChhhHHHHHhhc
Q 009332 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGN-FFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|..+ |.+.-.-...-++..+ + +-++..++.- +|+|||||.|| .|++.| +.-+|+.++=++.+.
T Consensus 187 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~-~-~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 187 GCTLQIGGADQWG-NIIAGVRLVRQKLGAT-V-HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CCCEEEECSTTHH-HHHHHHHHHHHHHCCC-C-EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCC-c-cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 5789999999644 5443332222233333 2 3355566543 99999999999 999987 577888888888774
No 48
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=97.70 E-value=0.0002 Score=73.45 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=41.3
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeee--CCc-cccccC-CCcccHhHHHHhcChhhHHHHHhh
Q 009332 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN--NNE-KMSKSL-GNFFTIRQITERYHPLALRHFLIS 311 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~--~G~-KMSKS~-Gn~i~~~dll~~~~~d~lR~~ll~ 311 (537)
..|+..||.|..+ |++.-.-...-++.. +..+.+++.+|.- +|. |||||. +|.|++.| +|+.++==+.+
T Consensus 200 ~ad~vpgG~DQ~~-~l~l~Rdla~r~~~~-~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-----~p~~i~~KI~k 272 (373)
T 3vgj_A 200 NVDICQLGIDQRK-VNMLAREYCDIKKIK-KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD-----SESDVNRKIKK 272 (373)
T ss_dssp TCSEECCBGGGHH-HHHHHHHHHHHHTCS-CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC-----CHHHHHHHHHH
T ss_pred CCcEEEcchhhHH-HHHHHHHHHHHhCCC-CCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC-----CHHHHHHHHHh
Confidence 5689999999654 544333222223322 2223466677654 784 999999 57888754 44555544444
No 49
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.66 E-value=0.00013 Score=76.24 Aligned_cols=69 Identities=23% Similarity=0.201 Sum_probs=48.4
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeee-CCc-cccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009332 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNE-KMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|.. +|.+.-.-....++..+ + +.+++.++.- +|. |||||.||.|++.| +|+.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~-~-~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQR-FNLLVGREVQRAYGQSP-Q-VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHHHTTCCC-C-EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHH-HHHHHHHHHHHHhCCCC-c-eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 478999999975 46554333333333333 3 3366666654 886 99999999999988 888888888775
No 50
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=97.63 E-value=4.1e-05 Score=79.77 Aligned_cols=72 Identities=22% Similarity=0.222 Sum_probs=49.0
Q ss_pred CeeEEEecccCcCccchhhHHHhhhc-cCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009332 236 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~-~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|..+ |.+.-.-...-+ +..+ + +-+++.++.- +|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 186 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~-~-~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 259 (420)
T 1jil_A 186 NCKIQVGGSDQWG-NITSGIELMRRMYGQTD-A-YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWINQ 259 (420)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHCCCC-C-EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCC-e-eEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 5899999999644 554433333333 3333 2 3355566644 99999999999999987 567787787777764
No 51
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.54 E-value=7.2e-05 Score=77.14 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=47.6
Q ss_pred CcceEEEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009332 38 GKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 38 ~~v~~y~~gPt~yg-~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
|+.....||--|+| .+||||. |.+..++++.+..|..|..+ |+|.- + +.....+++++. ++...+..+
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~---v~~~~~~~lQ~~~~~~v~i~--I~D~~-~----~l~~~~~~e~i~-~~~~~~~~~ 144 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHL---IPFMFTKWLQDSFRVPLVIQ--MTDDE-K----FYFRNIPMEQVE-AMTTENIKD 144 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGS---HHHHHHHHHHHHHTCCEEEE--ECHHH-H----HHHSCCCHHHHH-HHHHHHHHH
T ss_pred CCCeEEEEeecCCCccchHHHH---HHHHHHHHHHHhcCCcEEEE--EcchH-H----HhcCCCCHHHHH-HHHHHHHHH
Confidence 44456667778888 7999996 34444555444457777766 55432 2 222235665544 466678888
Q ss_pred HHHcCCCC
Q 009332 117 MADLQCLP 124 (537)
Q Consensus 117 l~~l~i~~ 124 (537)
+-++|+.+
T Consensus 145 ~lA~GlDp 152 (395)
T 3i05_A 145 IIAMGFDP 152 (395)
T ss_dssp HHTTTCCT
T ss_pred HHHcCCCC
Confidence 88889874
No 52
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.00018 Score=73.83 Aligned_cols=78 Identities=22% Similarity=0.143 Sum_probs=47.4
Q ss_pred HHhhcCCCeeEEEecccCcCccchhhHHHhhhccC-------CCCceEEEEeeeeee-CC------------------cc
Q 009332 229 SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ-------DSNVSYWMHNGHVTN-NN------------------EK 282 (537)
Q Consensus 229 ~~~~~g~~~dih~~G~Dl~f~H~~~~~a~~~a~~~-------~~~~~~~~h~g~v~~-~G------------------~K 282 (537)
+..++-...++..+|.|.. +|++.-.-...-++. ..+..+.+|+.+|.- +| +|
T Consensus 173 aaDil~~~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~K 251 (375)
T 2cyc_A 173 VADIFYQGVTIAHAGMDQR-KAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMK 251 (375)
T ss_dssp HHHHHHTTCSEEEEEGGGH-HHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHB
T ss_pred HHHHHHhCCCeecccchHH-HHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhc
Confidence 3333334578999999965 465443333332322 011123366666554 66 89
Q ss_pred ccccC-CCcccHhHHHHhcChhhHHHHHhhc
Q 009332 283 MSKSL-GNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 283 MSKS~-Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
||||. +|.|++.| +|+.++=.+.+.
T Consensus 252 MSKS~~~~~I~L~d-----~p~~i~~KI~~A 277 (375)
T 2cyc_A 252 MSKSKPYSAVFIHD-----SPEEIRQKLRKA 277 (375)
T ss_dssp GGGSCGGGSCBTTC-----CHHHHHHHHHHS
T ss_pred ccCCCCCCeeccCC-----CHHHHHHHHHHh
Confidence 99998 78898876 377777777663
No 53
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=97.52 E-value=5.6e-05 Score=78.58 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=48.4
Q ss_pred CeeEEEecccCcCccchhhHHHhhhc-cCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009332 236 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~-~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..||.|..+ |.+.-.-...-+ +..+ + +-+++.++.- +|+|||||.||.|++.| +.-+|+.++=++++.
T Consensus 185 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~-~-~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (419)
T 2ts1_A 185 GCRLQIGGSDQWG-NITAGLELIRKTKGEAR-A-FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWINT 258 (419)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHC--C-C-EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCC-e-eecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 5899999999644 554433222333 3332 2 3355566643 99999999999999987 567788887777764
No 54
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=97.51 E-value=0.00022 Score=72.58 Aligned_cols=84 Identities=7% Similarity=-0.086 Sum_probs=46.2
Q ss_pred eEEEeCCCCCCCCCcch-hhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 009332 41 GMYVCGVTAYDLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (537)
Q Consensus 41 ~~y~~gPt~yg~~HiGh-~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (537)
....||--|+|.+|||| +.+. ...+.|...|+++++..+ |.-.-+ . ...|.++++ .+++...+.+.+-+
T Consensus 41 ~~vy~G~~PTg~lHlGhyl~~l----~~~~~lQ~~G~~~~~~i~--D~~a~~-~--~~~~~~~e~-i~~~~~~~~~~~la 110 (348)
T 2j5b_A 41 FTAYNGFEPSGRIHIAQALITV----MNTNNMIECGGQMIIYIA--DWFAKM-N--LKMNGDINK-IRELGRYFIEVFKA 110 (348)
T ss_dssp EEEEEEECCCSSCBHHHHHHHH----HHHHHHHHTTEEEEEEEC--HHHHHH-T--TGGGGCHHH-HHHHHHHHHHHHHH
T ss_pred CEEEeccCCCCCCchhHHHHHH----HHHHHHHHcCCcEEEEec--cchhhh-C--CCCCCCHHH-HHHHHHHHHHHHHH
Confidence 34466766669999999 4433 234445567998876653 111101 0 011234433 34566777778888
Q ss_pred cCCCCC-CCccchhhh
Q 009332 120 LQCLPP-TYQPRVSDH 134 (537)
Q Consensus 120 l~i~~~-~~~~r~s~~ 134 (537)
+|+.+. ..+...|+.
T Consensus 111 ~Gldp~k~~i~~qs~~ 126 (348)
T 2j5b_A 111 CGINLDGTRFIWASEF 126 (348)
T ss_dssp TTCCGGGEEEEEHHHH
T ss_pred hcCCccceEEEECCHh
Confidence 999742 124444553
No 55
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.48 E-value=0.00041 Score=71.44 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=46.4
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009332 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
|+.....||--|+ |.+||||. |.+..++++.+..|..|.+ -|.|.. +.+.+ ...+++++ .++...+..+
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~---v~~~~~~~lQ~~~~~~v~i--~I~D~~-~~~~r---~~~~~e~i-~~~~~~~~~~ 141 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHL---VPFLFTKYLQDTFKVPLVI--QLTDDE-KFIFK---SNLTLEET-HNYAYENMKD 141 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTH---HHHHHHHHHHHHHCCCEEE--EECHHH-HHHHC---TTCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEeCCCCCCCCccHHHH---HHHHHHHHHHHhcCCCeEe--eccChH-HHhhc---cCCCHHHH-HHHHHHHHHH
Confidence 4334455778888 79999994 4444455544444777665 355543 22211 14565554 4466677888
Q ss_pred HHHcCCCC
Q 009332 117 MADLQCLP 124 (537)
Q Consensus 117 l~~l~i~~ 124 (537)
+.++|+.+
T Consensus 142 ~lA~GlDp 149 (393)
T 3hv0_A 142 IIACGFDP 149 (393)
T ss_dssp HHTTCCCT
T ss_pred HHHcCCCC
Confidence 88899974
No 56
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=97.46 E-value=8.6e-05 Score=75.62 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=43.4
Q ss_pred CCeeEEEecccCcCccchhhHHHhhhc---cC---CCCceEEEEeeeeee-CCc-cccccCCCcccHhHHHHhcChhhHH
Q 009332 235 SKFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMHNGHVTN-NNE-KMSKSLGNFFTIRQITERYHPLALR 306 (537)
Q Consensus 235 ~~~dih~~G~Dl~f~H~~~~~a~~~a~---~~---~~~~~~~~h~g~v~~-~G~-KMSKS~Gn~i~~~dll~~~~~d~lR 306 (537)
...++..+|.|+.. |.+...-....+ .+ ..|.-+..|+.+|.- +|. |||||.||.|++.| +|+.++
T Consensus 161 ~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d-----~p~~i~ 234 (351)
T 1yi8_B 161 FGATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD-----SADEVA 234 (351)
T ss_dssp HTCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC-----CHHHHH
T ss_pred cCCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC-----CHHHHH
Confidence 35789999999654 554322222211 12 223322223444443 886 99999999998876 277777
Q ss_pred HHHhhc
Q 009332 307 HFLISA 312 (537)
Q Consensus 307 ~~ll~~ 312 (537)
=.+.+.
T Consensus 235 ~Ki~~a 240 (351)
T 1yi8_B 235 RKVMGM 240 (351)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 777653
No 57
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00022 Score=73.34 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=48.4
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009332 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
...+|--|+|.+||||.-+++ +.|+|.. .|++|.+..+ |.+. ++. ..+.++.+ ...+...+..++.++
T Consensus 75 ~i~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i~Ia-D~ha--~~~---~~~~~~e~-i~~~~~~~~~~~lA~ 143 (392)
T 3jxe_A 75 FLYTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYIQIT-DDEK--FLF---KENLTFDD-TKRWAYDNILDIIAV 143 (392)
T ss_dssp EEEEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEEEEC-HHHH--HHH---CSSCCHHH-HHHHHHHHHHHHHTT
T ss_pred EEEeccCCCCchhHHHHHHHH----HHHHHHHhcCCceEEEec-chHH--hhc---CCCCCHHH-HHHHHHHHHHHHHHh
Confidence 344555566999999966553 3455665 7998887754 2221 111 11345544 444666788888889
Q ss_pred CCCCCC-CccchhhhH
Q 009332 121 QCLPPT-YQPRVSDHM 135 (537)
Q Consensus 121 ~i~~~~-~~~r~s~~~ 135 (537)
|+.+.. .+...|+..
T Consensus 144 GlDp~kt~i~~qS~~~ 159 (392)
T 3jxe_A 144 GFDPDKTFIFQNSEFT 159 (392)
T ss_dssp CCCTTSEEEEETTTST
T ss_pred CcCccceEEEECchhH
Confidence 997422 233445443
No 58
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.23 E-value=0.00049 Score=71.05 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=45.9
Q ss_pred CcceEEEeCCCCCC-CCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009332 38 GKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 38 ~~v~~y~~gPt~yg-~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
++.....||--|+| .+||||.- .+..++++.+..|..|.+. |.|.. +++.+ ..+++++ .++...+..+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v---~~~~~~~lQ~~~g~~~~i~--IaD~~-a~l~~----~~~~e~i-~~~~~~~~~~ 167 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTI---PFLLCKYMQDAFKIRLVIQ--ITDDE-KFLWK----SMRLEDA-MAYGRENIKD 167 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHH---HHHHHHHHHHHHTCCEEEE--ECHHH-HHHHS----SCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeeCCCCCcccHHHHH---HHHHHHHHHHhcCCcEEEE--eeChH-HHcCC----CCCHHHH-HHHHHHHHHH
Confidence 44445557788887 89999944 3444444333347776653 45542 23222 2565554 4466678888
Q ss_pred HHHcCCCC
Q 009332 117 MADLQCLP 124 (537)
Q Consensus 117 l~~l~i~~ 124 (537)
+-++|+.+
T Consensus 168 ~lA~GlDp 175 (406)
T 3tze_A 168 IVTLGFDP 175 (406)
T ss_dssp HHTTTCCG
T ss_pred HHHcCCCc
Confidence 88889873
No 59
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=97.21 E-value=0.00025 Score=72.03 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=46.1
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009332 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
...||--|+|.+||||...++.- .+.|+. |+++.+..+ |+-.-+ . ..+|+++ ..+..++..++.++|
T Consensus 6 ~i~sG~~PTG~lHLGn~vg~l~~---~~~lQ~-~~~~~~~Ia--D~ha~~-~-----~~d~~~i-~~~~~~~~~~~lA~G 72 (348)
T 2yy5_A 6 RALTGIQASGKQHLGNYLGVMQS---LIELQE-QCQLFVFVA--DLHSIT-V-----DFQPQAL-KQNNFDLVRTLLAVG 72 (348)
T ss_dssp EEEEEECCCTTCBHHHHHHTGGG---HHHHHH-HSEEEEEEC--HHHHTT-S-----CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHH---HHHHHh-CCcEEEEEc--Chhhcc-C-----CCCHHHH-HHHHHHHHHHHHHhC
Confidence 45667777799999997765411 112444 888765532 211100 0 0344443 346677788899999
Q ss_pred CCCCC--CccchhhhH
Q 009332 122 CLPPT--YQPRVSDHM 135 (537)
Q Consensus 122 i~~~~--~~~r~s~~~ 135 (537)
+.+ + .+...|+..
T Consensus 73 ldp-~k~~if~qS~~~ 87 (348)
T 2yy5_A 73 LDP-QKACLFLQSDLL 87 (348)
T ss_dssp CCT-TTEEEEEGGGCH
T ss_pred CCh-hHeEEEECCccc
Confidence 984 4 344555543
No 60
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.20 E-value=0.00044 Score=72.17 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=46.2
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009332 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++.....||--|+ |.+||||.-+++ .++ +|.. .|+.++++.+ |.- ..+.. ...++.. ..++..+...
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~---~l~-~lQ~~~g~~~i~lI~--D~t-a~l~~---~~~t~e~-i~~~~~~~~~ 168 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFV---FTK-WLQEVFDVPLVIELT--DDE-KFLFK---HKLTIND-VKNFARENAK 168 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHH---HHH-HHHHHHTCCEEEEEC--HHH-HHHHC---TTCCHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHH---HHH-HHHHHcCCeEEEEEe--ccc-ceeCC---CCCCHHH-HHHHHHHHHH
Confidence 3344566778888 899999966543 233 4555 8998776665 211 11110 1245544 4556666777
Q ss_pred HHHHcCCCC
Q 009332 116 DMADLQCLP 124 (537)
Q Consensus 116 ~l~~l~i~~ 124 (537)
++-++|+.+
T Consensus 169 ~~lA~GlDp 177 (432)
T 2ip1_A 169 DIIAVGFDP 177 (432)
T ss_dssp HHHTTTCCG
T ss_pred HHHHhCCCC
Confidence 888888873
No 61
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=97.15 E-value=0.0011 Score=70.17 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=46.1
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009332 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++.....||--|+ |.+||||.-+++ +.|+|.. .|+.|+++.+ |.. ..+.. ..++++ ...+...+..
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~----~~~~lQ~~~g~~~iilI~--D~~-a~igd----~lt~e~-i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVIQMT--DDE-KYLWK----DLTLDQ-AYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEEEEC--HHH-HHHHS----SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEEEEe--cce-eeecC----CCCHHH-HHHHHHHHHH
Confidence 4445566788888 999999976654 2444665 8998776543 211 11111 355554 4445556677
Q ss_pred HHHHcCCCC
Q 009332 116 DMADLQCLP 124 (537)
Q Consensus 116 ~l~~l~i~~ 124 (537)
++-++|+.+
T Consensus 221 ~~lA~GlDp 229 (477)
T 1r6t_A 221 DIIACGFDI 229 (477)
T ss_dssp HHHTTCCCT
T ss_pred HHHHhCCCC
Confidence 788889874
No 62
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=97.13 E-value=0.00029 Score=73.46 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=45.6
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 009332 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 115 (537)
++.....||--|+ |.+||||.-+++ . .|+|.. .|+.++++.+ |.. ..+.. ..++++ ..++...+..
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~---~-~~~lQ~~~G~~~iilIg--D~t-a~igd----~lt~e~-i~~n~~~~~~ 173 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFI---F-TKWLQDVFNVPLVIQMT--DDE-KYLWK----DLTLDQ-AYGDAVENAK 173 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH---H-HHHHHHHHTCCEEEEEC--HHH-HHHHS----SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH---H-HHHHHHHhCCcEEEEEe--cce-eeecC----CCCHHH-HHHHHHHHHH
Confidence 4445566788888 999999976554 2 344555 7998776543 211 11111 355555 4445555677
Q ss_pred HHHHcCCCC
Q 009332 116 DMADLQCLP 124 (537)
Q Consensus 116 ~l~~l~i~~ 124 (537)
++-++|+.+
T Consensus 174 ~~lA~GlDp 182 (437)
T 1r6u_A 174 DIIACGFDI 182 (437)
T ss_dssp HHHTTTCCG
T ss_pred HHHHhCCCc
Confidence 777888863
No 63
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=97.12 E-value=0.00047 Score=69.53 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=45.6
Q ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Q 009332 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (537)
Q Consensus 42 ~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (537)
...||--|+|.+||||...++ ..++++ .|+++.+..+ |.-.-+- ..++++ ..++...+..++-++
T Consensus 3 ~vysG~~PTG~lHlGn~vg~l-----~~~~~lQ~g~~~~~~Ia--D~ha~~~------~~~~e~-i~~~~~~~~~~~la~ 68 (328)
T 1i6k_A 3 TIFSGIQPSGVITIGNYIGAL-----RQFVELQHEYNCYFCIV--DQHAITV------WQDPHE-LRQNIRRLAALYLAV 68 (328)
T ss_dssp EEEEEECCCSCCBHHHHHHTH-----HHHHHHTTTSEEEEEEC--HHHHTTS------CCCHHH-HHHHHHHHHHHHHHT
T ss_pred EEEEeeCCCCcccHHHHHHHH-----HHHHHHHcCCcEEEEEe--CceeecC------CCCHHH-HHHHHHHHHHHHHHh
Confidence 356777777999999987664 222222 3999865532 2111000 034543 344666888999999
Q ss_pred CCCCCC-Cccchhh
Q 009332 121 QCLPPT-YQPRVSD 133 (537)
Q Consensus 121 ~i~~~~-~~~r~s~ 133 (537)
|+.+.. .+...|+
T Consensus 69 Gldp~k~~if~qS~ 82 (328)
T 1i6k_A 69 GIDPTQATLFIQSE 82 (328)
T ss_dssp TCCTTTEEEEEGGG
T ss_pred CCChhhcEEEecCc
Confidence 998421 3444554
No 64
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.07 E-value=0.00062 Score=75.12 Aligned_cols=87 Identities=9% Similarity=0.025 Sum_probs=48.1
Q ss_pred ceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcC-cchh-hHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 009332 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN-FTDV-DDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (537)
Q Consensus 40 v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~-idd~-d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (537)
.....||--|+|.+|||| .++--+..+.+...|++|+++.+ ++-+ +++ .|.+++++ +.+...+..++
T Consensus 40 ~~~vy~G~~PTg~lHLG~---~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~-------~~~~~e~i-~~~~~~~~~~~ 108 (690)
T 3p0j_A 40 LIRCYDGFEPSGRMHIAQ---GIFKAVNVNKCTAAGCEFVFWVADWFALMNDK-------VGGELEKI-RIVGRYLIEVW 108 (690)
T ss_dssp TEEEEEEECCCSCCBHHH---HHHHHHHHHHHHHTTEEEEEEECCGGGGGGCT-------TTTHHHHH-HHHHHHHHHHH
T ss_pred CceEEeeecCCCcchhHh---hHHHHHHHHHHHHCCCcEEEEEeeeEEEecCC-------CcchHHHH-HHHHHHHHHHH
Confidence 345567777889999999 22222223445567999876543 2211 111 12233333 33445667788
Q ss_pred HHcCCCCC-CCccchhhhHHH
Q 009332 118 ADLQCLPP-TYQPRVSDHMEQ 137 (537)
Q Consensus 118 ~~l~i~~~-~~~~r~s~~~~~ 137 (537)
.++|+.+. ..+...|++++.
T Consensus 109 lA~GlDp~k~~i~~qS~~v~~ 129 (690)
T 3p0j_A 109 KAAGMDMDKVLFLWSSEEITS 129 (690)
T ss_dssp HHTTCCGGGEEEEEHHHHHTT
T ss_pred HHcCCChHHeEEEechHHHHh
Confidence 89999742 124455655543
No 65
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.78 E-value=0.0084 Score=61.32 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=53.9
Q ss_pred CCcceEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009332 37 PGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 37 ~~~v~~y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
.|+.-...+|--|+|.+||||.-.++ -.+++...|++|.+. |.|+.. +. -...+..+....+..++..+
T Consensus 67 ~gk~~~v~sG~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~--IaD~ha-~t----~~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 67 RGERVAVLTGFMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVA--IADAEA-FA----VRRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp TTCCCEEEEEECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEE--ECHHHH-HH----TTCCCHHHHHHHHHHTTHHH
T ss_pred cCCCCEEEeCcCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEE--Eecchh-hc----cCCCCCHHHHHHHHHHHHHH
Confidence 34555566788888999999954332 345666679998754 333321 11 11233445556677777888
Q ss_pred HHHcCCCCCC-CccchhhhHHH
Q 009332 117 MADLQCLPPT-YQPRVSDHMEQ 137 (537)
Q Consensus 117 l~~l~i~~~~-~~~r~s~~~~~ 137 (537)
+-++|+.+.. .+...|+....
T Consensus 136 ~lA~GlDP~kt~if~qS~~~~~ 157 (372)
T 3a04_A 136 MIALGLDPKDTEFYFQTNRGTP 157 (372)
T ss_dssp HHHHTCCTTTCEEEEGGGSCHH
T ss_pred HHHcCCChHHcchhhhccchHH
Confidence 8899998532 24445543333
No 66
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=96.74 E-value=0.0031 Score=65.78 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=46.6
Q ss_pred CcceEEEeCCCCC-CCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 009332 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (537)
Q Consensus 38 ~~v~~y~~gPt~y-g~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (537)
|+.....||--|+ |.+||||.-. +-.++++.+..|..|.+. |+|.. +.+. +...+++++ ..+...+..+
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~---~~~l~~lQ~~~g~~v~I~--IgD~~-a~~~---r~~lt~E~I-~~n~~~~~~~ 158 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLP---FIFTKYLQDAFKCYVVIQ--ITDDE-KFLR---NRSLSYAEV-DSYTRENIKD 158 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHH---HHHHHHHHHHHTCEEEEE--ECHHH-HHHH---CTTCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEecCCCCCCCccHHHHHH---HHHHHHHHHccCceEEEE--eeCcH-Hhhc---ccCCCHHHH-HHHHHHHHHH
Confidence 4445566788888 8999999443 344444444446666653 55542 2221 114566554 4466677888
Q ss_pred HHHcCCCC
Q 009332 117 MADLQCLP 124 (537)
Q Consensus 117 l~~l~i~~ 124 (537)
+-++|+.+
T Consensus 159 ~lA~GlDp 166 (451)
T 3foc_A 159 IIACGFDP 166 (451)
T ss_dssp HHTTTCCG
T ss_pred HHHcCCCC
Confidence 88889863
No 67
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=96.73 E-value=0.0012 Score=67.62 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=45.9
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC
Q 009332 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (537)
Q Consensus 43 y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i 122 (537)
..+|--|+|.+||||.-.++.- .+.|. .|++|.+.. .|+-. ++ ...++.++ ..+..+...++-++|+
T Consensus 38 i~sG~~PTG~lHLGhyvGal~~---~~~LQ-~~~~~~~~I--aD~hA-lt-----~~~~~~~l-r~~~~~~aa~~lA~Gl 104 (388)
T 3prh_A 38 IFSGIQPSGSVTLGNYIGAMKQ---FVELQ-HDYNSYFCI--VDQHA-IT-----VPQDRLEL-RKNIRNLAALYLAVGL 104 (388)
T ss_dssp EEEEECCCSCCBHHHHHHTHHH---HHHTT-TTSEEEEEE--CHHHH-TT-----SCCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred EEEeeCCCCcchHHHHHHHHHH---HHHHH-ccCcEEEEE--eccee-ee-----cCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 5678888899999996554320 12222 499987654 23221 11 12455554 4456678888899999
Q ss_pred CCCC-Cccchhh
Q 009332 123 LPPT-YQPRVSD 133 (537)
Q Consensus 123 ~~~~-~~~r~s~ 133 (537)
.+.. .+...|+
T Consensus 105 Dp~kt~if~qS~ 116 (388)
T 3prh_A 105 DPEKATLFIQSE 116 (388)
T ss_dssp CTTTEEEEEGGG
T ss_pred ChhHeEEEeccc
Confidence 8432 2344554
No 68
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=96.34 E-value=0.0015 Score=66.02 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=44.4
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Q 009332 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (537)
Q Consensus 43 y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 121 (537)
..+|--|+|.+||||.-.++ ..+.++ .++++++.. .|+---+ . ..++. ...++..+...++.++|
T Consensus 18 i~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~i--aD~hA~t-~-----~~~~~-~~~~~~~~~~~~~lA~G 83 (346)
T 3n9i_A 18 VFSGAQPSGELTIGNYMGAL-----RQWVQMQDDYDCIYCI--VDLHAIT-A-----RQDPA-LLRKRTLDTLALYLACG 83 (346)
T ss_dssp EEEEECSCSCCBHHHHHHTH-----HHHHTTTTTSEEEEEE--CHHHHTT-S-----CCCHH-HHHHHHHHHHHHHHHHT
T ss_pred EEECcCCCCcccHHHHHHHH-----HHHHHHHhhCcEEEEE--ecceeec-C-----CCCHH-HHHHHHHHHHHHHHHcC
Confidence 44567777999999965442 333222 367776543 3332111 1 23443 44556677888889999
Q ss_pred CCCCC-Cccchhh
Q 009332 122 CLPPT-YQPRVSD 133 (537)
Q Consensus 122 i~~~~-~~~r~s~ 133 (537)
+.+.. .+...|+
T Consensus 84 lDp~k~~if~qS~ 96 (346)
T 3n9i_A 84 IDPKKSTIFVQSH 96 (346)
T ss_dssp CCTTTSEEEEGGG
T ss_pred CCccceEEEeccc
Confidence 98432 2344454
No 69
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.21 E-value=0.0018 Score=65.10 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=49.3
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeeee-CCccccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009332 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..+|.+||.|... |.+...-...-++..++ +-+++.++.- +|+|||||.||.|++.| +..+|+.++=++.+.
T Consensus 191 ~~~v~~gG~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQWG-NITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhHH-HHHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 5789999999643 55443322222333332 2245555544 89999999999999988 678888888777764
No 70
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=96.16 E-value=0.0019 Score=65.31 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=45.2
Q ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHCCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC
Q 009332 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (537)
Q Consensus 43 y~~gPt~yg~~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i 122 (537)
..+|--|+|.+||||.-.++. -+.++.. |+++.+.. .|+---+ . ..+++ ...++..++..++-++|+
T Consensus 9 v~sG~~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~i--aD~ha~~-~-----~~~~~-~~~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 9 VLSGVQPSGELSIGNYLGALR--QWQQMQD--DYDCQYCV--VDLHAIT-V-----RQDPQ-ALHEATLDALAICLAVGV 75 (341)
T ss_dssp EEEEECSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEE--CHHHHTT-S-----CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred EEeCcCCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEE--ecceeEc-C-----CCCHH-HHHHHHHHHHHHHHHcCC
Confidence 456777779999999665541 1223333 57776553 3332111 1 23554 445567788889999999
Q ss_pred CCCC-Cccchhhh
Q 009332 123 LPPT-YQPRVSDH 134 (537)
Q Consensus 123 ~~~~-~~~r~s~~ 134 (537)
.+.. .+...|+.
T Consensus 76 Dp~k~~i~~qS~v 88 (341)
T 3sz3_A 76 DPKKSTLFVQSHV 88 (341)
T ss_dssp CTTTSEEEEGGGC
T ss_pred ChhhcEEEeccch
Confidence 8432 23444543
No 71
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.86 E-value=0.0031 Score=64.21 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=38.6
Q ss_pred CeeEEEecccCcCccchhhHHHhhhccCCCCceEEEEeeeee-eCCccccccCCCcccHhHHHHhcChhhHHHHHhhc
Q 009332 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (537)
Q Consensus 236 ~~dih~~G~Dl~f~H~~~~~a~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 312 (537)
..++..+|.|... |.+.-.-...-++..++ +-++..++. ++|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 210 ~~~i~p~G~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 210 GCRVQLGGSDQLG-NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp CCCEEEEEGGGHH-HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 5789999999643 55443332233333332 335556654 489999999999999988 567888888888874
No 72
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=77.68 E-value=1.5 Score=44.27 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=26.3
Q ss_pred eEEEeCCCCCCC-CCcchhhHHHHHHHHHHHHHHCCCceEEEc
Q 009332 41 GMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (537)
Q Consensus 41 ~~y~~gPt~yg~-~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~ 82 (537)
....||--|+|+ +||||+.+.. .+ +.|...|++++++.
T Consensus 47 ~~vy~G~~PTg~sLHLGhl~~l~---~~-~~lQ~~G~~~~~lI 85 (356)
T 2pid_A 47 QTIYCGFDPTADSLHVGHLLALL---GL-FHLQRAGHNVIALV 85 (356)
T ss_dssp CEEEEEECCSSSSCBHHHHHHHH---HH-HHHHHTTCEEEEEE
T ss_pred CEEEEeecCCCCcccHHHHHHHH---HH-HHHHHCCCcEEEEE
Confidence 456678888896 9999955433 23 44556799988764
No 73
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=72.71 E-value=2 Score=42.64 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=26.5
Q ss_pred eEEEeCCCCCCC-CCcchhhHHHHHHHHHHHHHHCCCceEEEcC
Q 009332 41 GMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (537)
Q Consensus 41 ~~y~~gPt~yg~-~HiGh~r~~v~~D~l~R~l~~~G~~V~~v~~ 83 (537)
....||--|+|+ +||||.- ..-.+ +.|...|++++++.+
T Consensus 34 ~~vy~G~~PTg~slHlGh~l---~l~~~-~~lQ~~g~~~~~~i~ 73 (322)
T 2yxn_A 34 IALVCGFDPTADSLHLGHLV---PLLCL-KRFQQAGHKPVALVG 73 (322)
T ss_dssp CEEEEEECCSSSSCBHHHHH---HHHHH-HHHHHTTCEEEEEEC
T ss_pred CEEEEeecCCCCcccHHHHH---HHHHH-HHHHHcCCcEEEEEc
Confidence 345677788899 9999944 23333 455567999887654
No 74
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=60.35 E-value=37 Score=37.18 Aligned_cols=81 Identities=10% Similarity=-0.060 Sum_probs=49.9
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHH-CCCceEEEcCcchhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC
Q 009332 46 GVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (537)
Q Consensus 46 gPt~yg~~HiGh~r~~v~~D~l~R~l~~-~G~~V~~v~~idd~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~i~~ 124 (537)
.| +.|.+||||+-.++ -+++.+++. .|++|.++.+ |+-..| .. ..|.++ +-++.+...+.+++..+|..+
T Consensus 388 ~p-s~g~lHLGh~v~~~--k~l~~~~~~~~g~~v~ilIa--D~~A~i-~d--~~g~~~-e~i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 388 MP-ALLKVPLDVAEGMI--KVTKDFIAAHPEGTVTLVLP--DWSAVA-SD--EITGVE-KDISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp CC-CCSSCBHHHHHHHH--HHHHHHHHHCSSCEEEEEEC--TTHHHH-TT--CTTCCH-HHHHHHHHHHHHHHHHHTCCT
T ss_pred cC-CCCCcccchHHHHH--HHHHHHHHHcCCCeEEEEEe--cchhhh-CC--CCCCCH-HHHHHHHHHHHHHHHhcCCCc
Confidence 45 67999999976543 336677776 5777776543 332211 11 234554 445556778889999999963
Q ss_pred CCCccchhhhH
Q 009332 125 PTYQPRVSDHM 135 (537)
Q Consensus 125 ~~~~~r~s~~~ 135 (537)
-..+...|+..
T Consensus 459 k~~fv~~S~~~ 469 (690)
T 3p0j_A 459 SVKIVTENEVI 469 (690)
T ss_dssp TSEEEEHHHHH
T ss_pred CeEEEECCchh
Confidence 34455556543
Done!