BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009334
(537 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200,
chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1
SV=1
Length = 540
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/544 (81%), Positives = 492/544 (90%), Gaps = 11/544 (2%)
Query: 1 MAISAFRGSRLPLLHPPQLPAVRGVPS------GLRKFNYRSKRFTLLAQYSQTQDLFSS 54
MA+SAFRG+RLPL H Q P R V G R F K F L AQYSQTQDLF+S
Sbjct: 1 MAVSAFRGTRLPLFHHSQFPVARTVSGTSKKMIGARNF----KGFVLTAQYSQTQDLFTS 56
Query: 55 RLQNSIENLPKLVEDIVQTSINTGPRGAIRLAQGIQAFVGVGSEWLTDVSKSRSSTSGLP 114
RLQ+ IE LPKLVEDIVQTSINTGPRG RL QG+QAFVGVG EWL D+SKS S++ GLP
Sbjct: 57 RLQSQIEKLPKLVEDIVQTSINTGPRGVTRLVQGVQAFVGVGGEWLNDLSKSTSASGGLP 116
Query: 115 TELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGE 174
+ELQLGLLSPLYLR+LFERMGATYIKLGQFIAS+PTLFPPEYV+EFQNCFD+ P VPF E
Sbjct: 117 SELQLGLLSPLYLRKLFERMGATYIKLGQFIASAPTLFPPEYVKEFQNCFDKAPPVPFEE 176
Query: 175 IKRTLLEDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVA 234
I++ L E+LGRPIESVYEYVDPTPIASAS+AQVHGARLRGSQ+DVVIKVLKPGIED LVA
Sbjct: 177 IRKILQEELGRPIESVYEYVDPTPIASASIAQVHGARLRGSQEDVVIKVLKPGIEDFLVA 236
Query: 235 DLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGL 294
DLNF+YVV+RI EFL+PE SRTS+VGIVKDIRESMLEEVDF KEA NIESF+RYLE MGL
Sbjct: 237 DLNFIYVVSRIFEFLSPEFSRTSLVGIVKDIRESMLEEVDFNKEAQNIESFKRYLETMGL 296
Query: 295 TRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLAC 354
T QATAP+VY++CS+RRVLTMERLYGVPLTDLDSI SLVSSPENSLITALNVWFGSLLAC
Sbjct: 297 TGQATAPRVYKYCSSRRVLTMERLYGVPLTDLDSIRSLVSSPENSLITALNVWFGSLLAC 356
Query: 355 ETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
E+FHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAM++FLASIATEEYESMASALI+
Sbjct: 357 ESFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQ 416
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNAL 474
MGAT++D+D KAFA+DLEK+FSSIQELDTE+VVATARGT ++TTAV+AN+V+DERQMNAL
Sbjct: 417 MGATNRDVDGKAFAKDLEKMFSSIQELDTEIVVATARGTNSDTTAVAANVVMDERQMNAL 476
Query: 475 FLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRR-NRYR 533
FLDL+RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPN+NMLQDQRISI SN+R N Y+
Sbjct: 477 FLDLVRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNLNMLQDQRISIASNKRTNGYK 536
Query: 534 DSFK 537
DSF
Sbjct: 537 DSFN 540
>sp|P96936|Y647_MYCTU Uncharacterized protein Rv0647c/MT0675 OS=Mycobacterium
tuberculosis GN=Rv0647c PE=3 SV=1
Length = 488
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/398 (33%), Positives = 207/398 (52%), Gaps = 26/398 (6%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
L + F +G TY+K GQ IASSP F EF+ DR P E+ + +E+LG
Sbjct: 96 LPQTFADLGPTYVKFGQIIASSPGAFGESLSREFRGLLDRVPPAKTDEVHKLFVEELGDE 155
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
++ + P ASAS+AQVH A LR S ++VV+K+ +PGI + ADL + A+ +
Sbjct: 156 PARLFASFEEEPFASASIAQVHYATLR-SGEEVVVKIQRPGIRRRVAADLQILKRFAQTV 214
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E L R S +V D +++ EE+DF+ EA ++E++ +L A L + P+V+
Sbjct: 215 E-LAKLGRRLSAQDVVADFADNLAEELDFRLEAQSMEAWVSHLHASPLGKNIRVPQVHWD 273
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+T RVLTMER++G+ + + +I + L F L FH D+HAGNL
Sbjct: 274 FTTERVLTMERVHGIRIDNAAAIRKAGFDGVELVKALLFSVFEGGLRHGLFHGDLHAGNL 333
Query: 367 WLLRDGRIGFLDFGIVGRISPKT-WAAMDLFLASIATEEYESMASALIEMGATDKDIDAK 425
++ GRI F DFGI+GRI P+T W +L A + +++ + ++ MGA
Sbjct: 334 YVDEAGRIVFFDFGIMGRIDPRTRWLLRELVYALLVKKDHAAAGKIVVLMGAVGTMKPET 393
Query: 426 AFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESY 485
A+DLE+ AT + A+I RQ++AL +++Y
Sbjct: 394 QAAKDLERF-------------ATPLTMQSLGDMSYADI---GRQLSAL-------ADAY 430
Query: 486 GLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRIS 523
+K PRE L+ KQ LY +RY +LLAP M+ D +++
Sbjct: 431 DVKLPRELVLIGKQFLYVERYMKLLAPRWQMMSDPQLT 468
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 199/400 (49%), Gaps = 38/400 (9%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
+R FE +G +IK GQ +++ L PP+ EE DR P PF G+ R +E+ LG
Sbjct: 57 IRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVP--PFCGQAARLKIEESLG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
P+E++++ D TP+ASAS+AQVH RL+ + ++VIKV++P IE V+ ADL + +AR
Sbjct: 115 CPVETLFDDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLAR 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
++ P+ +R + +V++ R+++L+E++ +EAAN RR + P+V+
Sbjct: 175 LVARFVPQSARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTG---SDALYVPEVF 231
Query: 305 -QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
+HC VL MER+YG+P++D+ ++ + ++ + + V+F + FHAD+H
Sbjct: 232 TEHCR-EHVLVMERIYGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGAT 418
GN+++ + IG +D GIVG ++ + + + +Y +A +E G
Sbjct: 291 GNIFVSYEHPDNPLWIG-IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWV 349
Query: 419 DKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDL 478
D F + + I E + E + L+L
Sbjct: 350 PPDTKVDEFEFAIRTVLEPIFEKP-----------------------LSEISFGHVLLNL 386
Query: 479 LRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+ + + + LL K LLY + R L P +++ Q
Sbjct: 387 FNTARRFNMAVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQ 426
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/444 (27%), Positives = 213/444 (47%), Gaps = 38/444 (8%)
Query: 82 AIRLAQGIQAFVGVGSE-WLTDVSKSRSSTSGLPTELQLGLLSPLYLRRLFERMGATYIK 140
+I L QGI V + W ++ R S L + Q GL +R FE +G +IK
Sbjct: 14 SILLEQGIDELVPARYQPWPGRLA--RRSLFWLKNKRQ-GLNRGARIRLAFEALGPIFIK 70
Query: 141 LGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEYVDPTPIA 200
GQ +++ L PP+ EE DR P +R + LG IE++++ D TP+A
Sbjct: 71 FGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEASLGCTIETLFDDFDETPLA 130
Query: 201 SASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVG 260
SAS+AQVH ARL+ + ++VIKV++P IE V+ ADL + +AR++ P+ R +
Sbjct: 131 SASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQALARLVARFVPQSGRLRPIE 190
Query: 261 IVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY-QHCSTRRVLTMERLY 319
+V++ R+++L+E++ +EAAN RR + P+V+ +HC +VL MER+Y
Sbjct: 191 VVEEYRKTILDELNLMREAANAIQLRRNFTG---SEALYVPEVFTEHCRE-QVLVMERIY 246
Query: 320 GVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG-----RI 374
G+P++D+ ++ + ++ + + V+F + FHAD+H GN+++ + I
Sbjct: 247 GIPVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPENPLWI 306
Query: 375 GFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLEKI 434
G +D GIVG ++ + + + +Y +A +E G D F + +
Sbjct: 307 G-IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTV 365
Query: 435 FSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLKFPREFA 494
I E + E + L+L + + ++ +
Sbjct: 366 LEPIFEKP-----------------------LSEISFGHVLLNLFNTARRFNMQVQPQLV 402
Query: 495 LLLKQLLYFDRYTRLLAPNMNMLQ 518
LL K LLY + R L P +++ Q
Sbjct: 403 LLQKTLLYVEGLGRQLYPQLDLWQ 426
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 192/397 (48%), Gaps = 33/397 (8%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED-LGR 185
LR FE +G +IK GQ +++ L PP+ EE DR P+ G++ R +E LG+
Sbjct: 57 LRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFD-GQLAREQIEQALGQ 115
Query: 186 PIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARI 245
PIE+++ D P+ASASVAQVH ARL+ + ++VIKV++P I+ V+ D+ + + A+I
Sbjct: 116 PIEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLCAKI 175
Query: 246 LEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQ 305
+ FL P +R V ++++ R ++L+E++ EAAN RR E + P VY
Sbjct: 176 VAFLIPN-NRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFEN---SSHLYVPLVYS 231
Query: 306 HCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGN 365
VL MER+YG+P++D ++ + + + + V+F + FHAD+H GN
Sbjct: 232 DYCRESVLVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGN 291
Query: 366 LWLL----RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 421
+++ D + +D GIVG ++ + + + +Y +A ++ G D
Sbjct: 292 VFVSYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPD 351
Query: 422 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRV 481
+ F L + E + A + E + L+L
Sbjct: 352 TKVEEFESALRTVL--------EPIFAKP---------------LAEISFGQVLLNLFNT 388
Query: 482 SESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+ + + + LL K LLY + R L P +++ Q
Sbjct: 389 ARRFNMHVQPQLVLLQKTLLYIEGLGRHLYPQLDLWQ 425
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 198/416 (47%), Gaps = 44/416 (10%)
Query: 107 RSSTSGLPTELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDR 166
R +++ LP ++L L E +G ++K GQ +++ L PPEY +E DR
Sbjct: 42 RDTSAPLPQRVRLAL----------ESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDR 91
Query: 167 TPAVPF-GEIKRTLLE-DLGRPIESVYEYVDPTPIASASVAQVHGARLR----GSQDDVV 220
P PF G+I R ++E LGR +E ++ D P+ASASVAQVH A LR G +V
Sbjct: 92 VP--PFDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVA 149
Query: 221 IKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAA 280
+KVL+PGI V+ DL+ + +A +E L + R +V + + + +E+D EAA
Sbjct: 150 VKVLRPGILPVIEQDLSLMRTLAGWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAA 209
Query: 281 NIESFRRYLEAMGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSL 340
N RR + + P+V+ S+R VLT+E ++G+P+ ++ + +
Sbjct: 210 NASQLRRNFKGSDML---IVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLS 266
Query: 341 ITALNVWFGSLLACETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASI 400
+ ++F + FHAD+H GN+++ DGR LDFGIVG ++ + + +
Sbjct: 267 RFGVEIFFTQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAF 326
Query: 401 ATEEYESMASALIEMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAV 460
+Y +A+A IE G +D A+ + + I E + +
Sbjct: 327 FNRDYHRVATAHIESGWVPRDTRAEELEAAVRTVCEPIFE--------------KPLSEI 372
Query: 461 SANIVVDERQMNALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 516
S +V+ L L S + ++ + LL K LL + R L P +++
Sbjct: 373 SFGMVL---------LRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDL 419
>sp|A9KYL6|UBIB_SHEB9 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS195) GN=ubiB PE=3 SV=1
Length = 549
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 204/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES+++ + TP+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A6WIE7|UBIB_SHEB8 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS185) GN=ubiB PE=3 SV=1
Length = 549
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 204/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES+++ + TP+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 188/396 (47%), Gaps = 35/396 (8%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR E +G +IK GQ +++ L PP+ +E D+ P P + + LG P
Sbjct: 59 LRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAP 118
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+ ++ D P+ASASVAQVH A+L+ S ++VV+KV++PG++ V+ DL +++++ARI
Sbjct: 119 VSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWLFLLARIA 177
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E + + R V +V D +++ +E+D +EAAN RR E L P+VY
Sbjct: 178 ERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 234
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YGVP+TDL +++ + + + ++F + FHAD+H GN+
Sbjct: 235 LCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNI 294
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GI+G ++ + + L + +Y +A I+ G
Sbjct: 295 FV--STRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 352
Query: 421 DIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLR 480
D F + + I E + + L L L +
Sbjct: 353 DTKVNEFEAAIRTVCEPIFEKPLKDI-----------------------SFGQLLLRLFQ 389
Query: 481 VSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 516
+ + ++ + LL K LL + R L P++++
Sbjct: 390 TARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 198/402 (49%), Gaps = 43/402 (10%)
Query: 123 SPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED 182
SP LR+ FE +G T+IK+GQ +++ P L P Y++E + P F +I+ E+
Sbjct: 32 SPENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKLQNNVPPENFIDIENLFFEE 91
Query: 183 LGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVV 242
L I++ + Y D TPI SAS+AQVH A L+ + V++K+ +PGI +++ DL+ ++
Sbjct: 92 LSSTIDNTFLYFDKTPIGSASIAQVHDAILKDGR-FVIVKIQRPGIAEMMKTDLS---II 147
Query: 243 ARILEFLNPELSRTSMVGIVKDIRESMLE-------EVDFKKEAANIESFRRYLEAMGLT 295
++L +++T + D +E++ E E+DF E NI+ F++ E +
Sbjct: 148 KKLL-----NITKTKFTDALIDPKEAIDELFISTTQELDFINEINNIKKFKKLNEDVKFV 202
Query: 296 RQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACE 355
R P T +++ ME++ G+ + +L + + E +F +
Sbjct: 203 R---TPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLSYFKQVFQDG 259
Query: 356 TFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEM 415
FH D H GNL L+R+ I ++DFGI+G IS +++ + ++A + M S ++ +
Sbjct: 260 FFHGDPHPGNL-LIRENHICYIDFGIMGTISKSLKISLNDAILAVAYHDVNKMISVIMSI 318
Query: 416 GATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALF 475
G ++ + +E +F N +VS + +++ +
Sbjct: 319 GVKKGYVNRNSLYESIEYLFD-------------------NYISVSLKNI----KISVML 355
Query: 476 LDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNML 517
++ ++S++ +K P+E +LLK L + ++P ++++
Sbjct: 356 QEIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIV 397
>sp|A3D9F4|UBIB_SHEB5 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1
Length = 549
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES+++ + P+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|B8E6B4|UBIB_SHEB2 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS223) GN=ubiB PE=3 SV=1
Length = 549
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES+++ + P+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+
Sbjct: 115 APIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++E+L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 LIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A1RP80|UBIB_SHESW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain W3-18-1) GN=ubiB PE=3 SV=1
Length = 549
Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 202/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVP--PFDGVLARKAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
IES+++ D TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A
Sbjct: 115 ASIESLFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKILADLQLMSQTAN 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
+LE+ E +R +++D R ++L E++ K EA N R +L + L P V
Sbjct: 175 LLEYFLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFLNSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + S+ + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARSFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A4Y2Q3|UBIB_SHEPC Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=ubiB PE=3
SV=1
Length = 549
Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 202/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVP--PFDGVLARKAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
IES+++ D TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A
Sbjct: 115 ASIESLFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKILADLQLMSQTAN 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
+LE+ E +R +++D R ++L E++ K EA N R +L + L P V
Sbjct: 175 LLEYFLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFLNSDAL----YVPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + S+ + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARSFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 180/393 (45%), Gaps = 28/393 (7%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR L +G ++IK GQ +A+ P + +Y+ E D P P + E+LG+P
Sbjct: 170 LRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQP 229
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+E+++ + IA+AS+ QV+ A LR + +DV IKV +P IE ++ DL +A L
Sbjct: 230 LENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFL 289
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
+ + + IV + E +LEE+D+ EA NIE F LE P VY++
Sbjct: 290 NGFSLQKLGCNAELIVDEFGEKLLEELDYTLEARNIEDF---LENFKDDPTVKIPGVYKN 346
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
RVL ME + G+ TD +I L ++ LL FH D H GN+
Sbjct: 347 LCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNI 406
Query: 367 WLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKA 426
+ ++DGRI ++DFG V +S + + + E+Y MA+ +G KD D
Sbjct: 407 FAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSP 466
Query: 427 FARDLEKIFSSIQELDTELVVATARGTTT-NTTAVSANIVVDERQMNALFLDLLRVSESY 485
LE I+ + + +G N +V+ Q N L D +
Sbjct: 467 IVPALEAIWQN----------SAGKGLADFNFRSVTG-------QFNKLVYD-------F 502
Query: 486 GLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
++ P F+L+++ LL + L P+ L+
Sbjct: 503 PIRIPERFSLVIRSLLTQEGICFTLKPDFKFLE 535
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 189/394 (47%), Gaps = 30/394 (7%)
Query: 126 YLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGR 185
++R +G T+IK+GQ ++ LFP EYVEE D PA + + + E+LG+
Sbjct: 87 WIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGK 146
Query: 186 PIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARI 245
PI +Y DP P+A+AS+ QVH A+L + +DVV+KV +PG++ + DL + +A+
Sbjct: 147 PIAKLYRSFDPVPLAAASLGQVHKAQLH-TGEDVVVKVQRPGLKKLFTIDLAILKKIAQY 205
Query: 246 LEFLNPELSRT-SMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
+ +P+ R GI ++ + + +E D+ +E + ++FRR + P+VY
Sbjct: 206 FQN-HPKWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVK---VPRVY 261
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
++ ++LT+E L G+ ++ D++ + + + LL FHAD H G
Sbjct: 262 WRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPG 321
Query: 365 NLWLLRD-GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDID 423
NL + + G + F DFG++G I+P T + L +A + E + ++L+ +GA + D
Sbjct: 322 NLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETED 381
Query: 424 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 483
R ++ + + + E E+ + + DL ++
Sbjct: 382 MGPIRRSVQFLLDNFMDKPFE-----------------------EQSITKISDDLYEIAY 418
Query: 484 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNML 517
+FP F +++ + + L P+ N +
Sbjct: 419 DQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNFM 452
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 196/420 (46%), Gaps = 44/420 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L PP+ EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 472
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 473 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 532
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 EVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 196/420 (46%), Gaps = 44/420 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L PP+ EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 472
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 473 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 532
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 EVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 196/420 (46%), Gaps = 44/420 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L PP+ EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 472
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 473 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 532
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 EVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q0HE99|UBIB_SHESM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIETELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
I+++L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 IIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A0L1M6|UBIB_SHESA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain ANA-3) GN=ubiB PE=3 SV=1
Length = 549
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES ++ D TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIESYFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++++L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 VIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ R+ IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISREHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q0HZP9|UBIB_SHESR Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-7) GN=ubiB PE=3 SV=1
Length = 549
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIES ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++++L E +R +++D R ++L E++ K EA N R +L++ L P V
Sbjct: 175 VIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ RD IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRDHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 169/347 (48%), Gaps = 21/347 (6%)
Query: 111 SGLPTELQLG-LLSPLYL------------RRLFERMGATYIKLGQFIASSPTLFPPEYV 157
S LPT L++ LL+P +L R E +G ++K GQ +++ L P +
Sbjct: 26 SELPTPLKIFFLLAPWHLFPQPKLSRGDRLRLALEELGPVFVKFGQILSTRRDLLPDDMA 85
Query: 158 EEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQD 217
E + DR P P + + + + LG P+ ++ P P+ASASVAQVH A L Q
Sbjct: 86 ESLKQLQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLPNGQ- 144
Query: 218 DVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKK 277
VV+KVL+PGIE V+ DL +Y++A +LE E R V +V D ++ +E+D ++
Sbjct: 145 KVVVKVLRPGIEKVIRQDLGLMYLMAGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQR 204
Query: 278 EAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPE 337
EAAN RR E L P + + + VL MER++G+P+ D+ ++ +
Sbjct: 205 EAANASQLRRNFENSPLI---YIPFIDWDYTRKSVLVMERIHGIPIADVPALEKAGVNMR 261
Query: 338 NSLITALNVWFGSLLACETFHADVHAGNLWL----LRDGRIGFLDFGIVGRISPKTWAAM 393
+ ++F + FHAD+H GN+++ D + +DFGIVG ++P + +
Sbjct: 262 VLAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYL 321
Query: 394 DLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLEKIFSSIQE 440
L + +Y +A I+ G + F + + I E
Sbjct: 322 ARNLLAFFRRDYRQVAQLHIQSGWVPPETRVNEFEAAIRTVCEPIFE 368
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 178/395 (45%), Gaps = 35/395 (8%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LRR+F R+G T++KLGQ +++ P L PP+Y+EE D P P E + +L
Sbjct: 150 LRRIFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLS 209
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+E+++ V P PIA+AS+ QV+ A+LR S V +KV +PGIE+ + D + V +++
Sbjct: 210 LETIFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLI 269
Query: 247 ----EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPK 302
+F+ T ++ ++ + + +E+++ +EA N RR+ + P
Sbjct: 270 NKYVDFIT-----TDVLTLIDEFACRVYQELNYVQEAQNA---RRFKKLYADKADVLVPD 321
Query: 303 VYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVH 362
++ ++R+VLTME + G L + +I S + + T + LL FHAD H
Sbjct: 322 IFWDYTSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPH 381
Query: 363 AGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDI 422
GNL DG++ FLDFG++ + A+ + + +YE+MA + D+
Sbjct: 382 PGNLLATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDV 441
Query: 423 DAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVS 482
D L F + N V E L L V
Sbjct: 442 DVTPIIPALRDFFDD-----------------------ALNYTVSELNFKTLVDGLGAVF 478
Query: 483 ESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNML 517
Y P +AL+L+ L + PN +L
Sbjct: 479 YQYPFNVPPYYALILRSLTVLEGLALYADPNFKVL 513
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 152 bits (383), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLL--EDLG 184
LR + +G +IK GQ +++ L P + +E DR P PF + L E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVP--PFNPQQSVALIEEQLG 117
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
++ + D P+ASASVAQVH A+L+ + ++VV+KV++PG++ V+ DL ++Y+ AR
Sbjct: 118 ARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLAWLYLFAR 176
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
+ E + E R +V +V D +++ +E+D +EAAN +R E L P++Y
Sbjct: 177 LAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLL---YVPQIY 233
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
+VL MER+YGVP+TDL ++ + + + ++F + FHAD+H G
Sbjct: 234 WDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPG 293
Query: 365 NLWLLR----DGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
N+++ D + +D GIVG ++P+ + L + +Y +A I+ G
Sbjct: 294 NIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
D F + + I E
Sbjct: 354 DTQVNEFEAAIRTVCEPIFE 373
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 152 bits (383), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 187/395 (47%), Gaps = 32/395 (8%)
Query: 125 LYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLG 184
+ LR L +G TYIK+GQ +++ P L PP +++E D+ P+ P R + E+LG
Sbjct: 105 IQLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELG 164
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
P E +Y + P PIA+AS+ QV+ +L+ + + V +KV +P + + D +Y++
Sbjct: 165 APAEEIYAELSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLD---IYIMRS 220
Query: 245 ILEFLNPELS--RTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPK 302
+ + + R+ +V I ++ + EE+++ +EA N E F + G + P
Sbjct: 221 LSLWARRSVKRLRSDLVAITDELASRVFEEMNYYQEAINGEKFA---QLYGSLPEIYVPS 277
Query: 303 VYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVH 362
+Y + RRVLTME + G+ LT++ +I + + + + LL FHAD H
Sbjct: 278 IYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPH 337
Query: 363 AGNLWLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDI 422
GNL + DGR+ +LDFG++ I P + + + +++S+A +++ D
Sbjct: 338 PGNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDT 397
Query: 423 DAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVS 482
D K L ++F G + N QM+A+ +
Sbjct: 398 DLKPIIPALGQVF----------------GNALGASVAELNFKSITDQMSAMMYE----- 436
Query: 483 ESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNML 517
+ + P +AL+++ ++ + + PN +L
Sbjct: 437 --FPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVL 469
>sp|A3QIE3|UBIB_SHELP Probable ubiquinone biosynthesis protein UbiB OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 203/428 (47%), Gaps = 52/428 (12%)
Query: 99 WLTDVSKSRSSTSGLPTELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVE 158
WLT+ K + L +Q +G YIK GQ +++ L E+ E
Sbjct: 43 WLTNQHKDKVGGERLKLAMQ--------------ELGPVYIKFGQMLSTRRDLLSDEWAE 88
Query: 159 EFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQ 216
E DR P PF I R +E +LG PIE+ ++ D TP+ASAS++QVH A L+ +
Sbjct: 89 ELAMLQDRVP--PFDSAIARAQIEAELGAPIETYFDNFDDTPLASASISQVHTATLKSNG 146
Query: 217 DDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFK 276
++VV+KVL+P +E+ + ADL + A++LE L +R +V+D R ++ E++ K
Sbjct: 147 EEVVLKVLRPNVEEKVHADLLLMTQSAQVLETLLGHGNRLRPAEVVEDYRTTIEGELNLK 206
Query: 277 KEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSS 335
EA N R ++++ L PK+Y+ R++ MER+YGVP++D ++ + ++
Sbjct: 207 LEALNAIKLRNNFIDSGAL----YIPKMYEEFCFTRLIVMERIYGVPVSDRAALEAQGTN 262
Query: 336 PENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG-----RIGFLDFGIVGRISPKTW 390
+ + ++F + FHAD+H GN+++ + IG LD GI+G ++ +
Sbjct: 263 LKLLAERGVELFFTQVFRDNFFHADMHPGNIFVSTEHPEDPFYIG-LDCGIMGTLTEQDK 321
Query: 391 AAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATA 450
+ + +Y +A IE G D D AF + ++ + +
Sbjct: 322 RYLAENFLAFFNRDYTRIAQLYIESGWVAADTDLVAFEQAIKVVCEPM------------ 369
Query: 451 RGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLL 510
N +DE + L+L R + + + + LL K LLY + R L
Sbjct: 370 -----------FNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYIEGLGRQL 418
Query: 511 APNMNMLQ 518
P +++ Q
Sbjct: 419 YPQLDLWQ 426
>sp|Q8PQT0|UBIB_XANAC Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=ubiB PE=3 SV=1
Length = 557
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 193/418 (46%), Gaps = 40/418 (9%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L P + EE DR PF G+ R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGQAARLIVEAALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNAL 474
G ++ I EL+ A AR N + E + +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYF----NRPLSEISLAQV 386
Query: 475 FLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 532
+ L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 387 LIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPRLDIWAVARPVLERILRERY 444
>sp|B8F6K1|UBIB_HAEPS Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
parasuis serovar 5 (strain SH0165) GN=ubiB PE=3 SV=1
Length = 549
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/451 (27%), Positives = 211/451 (46%), Gaps = 44/451 (9%)
Query: 84 RLAQGIQAFVGVG-SEWLTDVSKSRSSTSGLPTELQLGLLSP-----LYLRRLFERMGAT 137
RL I F+ G E + D+ +R G + + P + LR + +G
Sbjct: 8 RLYNIIHTFLRYGIDEVIPDIPLTRGIRCGRKSLFWVKNQYPNEPFGVRLRLALQELGPV 67
Query: 138 YIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED-LGRPIESVYEYVDP 196
+IKLGQ +++ LF PE ++ D A G++ R L+E+ LG +E ++ D
Sbjct: 68 WIKLGQMLSTRRDLFEPELADQLALLQDSVEAFD-GKLARRLIEEALGDKLEKWFDDFDE 126
Query: 197 TPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPE 252
T +ASAS+AQVH A+ +Q +VV+KVL+P IE V+ DL +Y +A + LN E
Sbjct: 127 TALASASIAQVHIAKFNQNQPLAGKEVVLKVLRPEIERVIKDDLALMYRLASWIPRLNKE 186
Query: 253 LSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRV 312
R V +V++ +++L+E+D +KE N R E + P++YQ + V
Sbjct: 187 GRRLRPVEVVREYEKTLLDELDLRKEMVNAIRLRNNFEN---SEMLYVPEMYQEFCHKNV 243
Query: 313 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 372
+ MER+YG+P+ ++D + + + + + V+F + FHAD+H GN+++ +
Sbjct: 244 IVMERIYGIPVANIDELKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVNPNH 303
Query: 373 -----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 427
IG +D GIVG ++ + + +Y +A +E G T D D AF
Sbjct: 304 PENPQYIG-IDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVESGWTPADTDIDAF 362
Query: 428 ARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGL 487
E+ F + E + A + E + L+L V+ + +
Sbjct: 363 ----EEAFREV----CEPIFAKP---------------LSEISFGHVLLNLFTVARKFNM 399
Query: 488 KFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+ + LL K LLY + R + P +++ Q
Sbjct: 400 EVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQ 430
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/425 (27%), Positives = 200/425 (47%), Gaps = 39/425 (9%)
Query: 114 PTELQLGLLSPLYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFG 173
PTEL G LR + +G +IK GQ +++ L PP+ +E DR P PF
Sbjct: 51 PTELSRGA----RLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVP--PFD 104
Query: 174 EIKRTLL--EDLGRPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDV 231
K L E LG + V+ D P+ASASVAQVH ARL+ + ++VV+KV++PG++ V
Sbjct: 105 PKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKVVRPGLKPV 163
Query: 232 LVADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEA 291
+ DL +++++A+ E + + R V IV D +++ +E+D +EAAN RR E
Sbjct: 164 IAQDLAWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFED 223
Query: 292 MGLTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSL 351
L P+VY +VL MER+YGVP+TD+ +++ + + + V+F +
Sbjct: 224 SELM---YVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQV 280
Query: 352 LACETFHADVHAGNLWL--LRDGRIGF--LDFGIVGRISPKTWAAMDLFLASIATEEYES 407
FHAD+H GN+++ ++ + +D GIVG ++ + + L + +Y
Sbjct: 281 FRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRR 340
Query: 408 MASALIEMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVD 467
+A I+ G + F + + I E + +
Sbjct: 341 VAQLHIDSGWVPANTKVNEFEAAIRTVCEPIFEKPLKDI--------------------- 379
Query: 468 ERQMNALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSN 527
+ + L + + + ++ + LL K LL + R L P++++ + +
Sbjct: 380 --SFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYLERW 437
Query: 528 RRNRY 532
R+RY
Sbjct: 438 MRDRY 442
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|Q9CKD4|UBIB_PASMU Probable ubiquinone biosynthesis protein UbiB OS=Pasteurella
multocida (strain Pm70) GN=ubiB PE=3 SV=1
Length = 527
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 200/407 (49%), Gaps = 43/407 (10%)
Query: 125 LYLRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED- 182
L LR + +G +IKLGQ +++ LFPP+ +E D+ PF G+I R +E
Sbjct: 55 LRLRLALQELGPVWIKLGQMLSTRRDLFPPDIADELALLQDQVD--PFDGKIARAQIEKA 112
Query: 183 LGRPIESVYEYVDPTPIASASVAQVHGARL---------RGSQDDVVIKVLKPGIEDVLV 233
LG P+E+ ++ + T +ASAS+AQVH A+ R + +VV+KVL+P I+ ++
Sbjct: 113 LGAPLETWFDEFNETALASASIAQVHTAKFKQNAPHLENRLAGKEVVLKVLRPNIQQMIN 172
Query: 234 ADLNFVYVVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMG 293
ADL+ +Y VA + + E R V +V++ +++ +E+D ++E AN R E
Sbjct: 173 ADLSLMYKVASWIPRIKAEGRRLRPVEVVREYEKNLRDELDLRREMANAIQLRANFENSP 232
Query: 294 LTRQATAPKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLA 353
+ P++Y+ + V+ MER+YG+P+++++ + + ++ + + V+F +
Sbjct: 233 ML---YIPEMYKQFCHQTVIVMERIYGIPVSNIEELHANGTNMKLLAERGVQVFFTQVFR 289
Query: 354 CETFHADVHAGNLWLLR----DGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMA 409
FHAD+H GN+++ R D + +D GIVGR++ + + +Y +A
Sbjct: 290 DSFFHADMHPGNIFVNRAHPDDPQYIGIDCGIVGRLNDHDKRYLAESFVAFFNRDYRRVA 349
Query: 410 SALIEMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDER 469
+ G T KD + D E+ F + E + A + E
Sbjct: 350 EMHVASGWTPKDTNID----DFEQAFREV----CEPIFAKP---------------LSEI 386
Query: 470 QMNALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 516
+ L+L V+ Y ++ + LL K LLY + R L P +++
Sbjct: 387 SFGHVLLNLFNVAREYNMEVQPQLVLLQKTLLYIEGLGRQLYPQLDL 433
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 12/320 (3%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR + +G +IK GQ +++ L P + E D+ P P + + E LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
IE V+ + P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLA 178
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E ++ E R V +V D +++++E+D +EAAN RR E L P+VY
Sbjct: 179 ERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWD 235
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+VL MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 367 WLLRDGRIGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
++ R + +D GIVG ++ + + L + +Y +A I+ G
Sbjct: 296 FV--STRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPA 353
Query: 421 DIDAKAFARDLEKIFSSIQE 440
+ F + + I E
Sbjct: 354 ETKVNDFEAAIRTVCEPIFE 373
>sp|Q8E9R5|UBIB_SHEON Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
oneidensis (strain MR-1) GN=ubiB PE=3 SV=1
Length = 549
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 203/402 (50%), Gaps = 42/402 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
L+ + +G YIKLGQ +++ L E+ E D+ P PF G + R +E +L
Sbjct: 57 LKLAMQELGPVYIKLGQMLSTRRDLLSDEWATELAMLQDKVP--PFDGALARLAIEAELK 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
PIE+ ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+
Sbjct: 115 APIETFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTAK 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKV 303
++++L E +R +++D R ++L E++ K EA N R ++++ L P V
Sbjct: 175 VIDYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFIDSDAL----YIPYV 230
Query: 304 YQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHA 363
Y+ R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H
Sbjct: 231 YEEFCYPRLMVMERIYGIPVSDIVALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHP 290
Query: 364 GNLWLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMG 416
GN+++ R+ IG LD GI+G +S K + A + FLA +Y +A IE G
Sbjct: 291 GNIFISRENPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESG 347
Query: 417 ATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFL 476
+ D +AF + ++ + + N +DE + L
Sbjct: 348 WVSEKTDLQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLL 384
Query: 477 DLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+L R + + + + LL K LLY + R L P +++ Q
Sbjct: 385 ELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 194/420 (46%), Gaps = 44/420 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L P + EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 472
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 473 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 532
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 QVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 194/420 (46%), Gaps = 44/420 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L P + EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 472
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 473 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 532
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 QVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 194/420 (46%), Gaps = 44/420 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L P + EE DR PF GE R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 472
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 473 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 532
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 QVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q3BZ34|UBIB_XANC5 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=ubiB PE=3
SV=1
Length = 557
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 194/420 (46%), Gaps = 44/420 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G ++K GQ +++ L P + EE DR PF G+ R ++E LG
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGQAARLIVEAALG 112
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVY 240
P+ + D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++
Sbjct: 113 LPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPDIERQIDADIALLH 172
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A ++E +P + +V +I ++ E+D ++E AN RR+ E +
Sbjct: 173 SLATLVERTHPRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEG---SDDLYV 229
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P+V + R LT+ER+YG+P D+ + + + + V++ + FHAD
Sbjct: 230 PEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHAD 289
Query: 361 VHAGNLWLLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIE 414
HAGN+W+ D R LDFGI+G++S + + +I ++Y MA +E
Sbjct: 290 AHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVE 349
Query: 415 MGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMN 472
G ++ I EL+ A AR T +S E +
Sbjct: 350 AGWMPSNV--------------RIDELE-----AAARSVCEPYFTRPLS------EISLA 384
Query: 473 ALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 532
+ + L RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 385 QVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 194/398 (48%), Gaps = 34/398 (8%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
L+ + +G YIK GQ +++ L E+ +E DR PA + + +L P
Sbjct: 57 LKLAMQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSALAREAIEAELKAP 116
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
I+S+++ D TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + VA +
Sbjct: 117 IDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIKADLELMLQVATWV 176
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQ 305
L E +R V +V+D + ++L E++ K EA N R +L++ L P VY+
Sbjct: 177 NRLLGEGNRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSDAL----YIPYVYE 232
Query: 306 HCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGN 365
R++ MER+ G+P++D++++++ ++ + + ++F + FHAD+H GN
Sbjct: 233 ELCHPRLMVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGN 292
Query: 366 LWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 420
+++ R+ IG LD GI+G ++ + + + +Y +A +E G
Sbjct: 293 IFISREHPENPFYIG-LDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLYVESGWVSA 351
Query: 421 DIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLR 480
D D AF + ++ + + N ++E + L+L R
Sbjct: 352 DTDILAFEQAVKLVCEPM-----------------------FNKPLNEISFGHVLLELFR 388
Query: 481 VSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+ + + + LL K LLY + R L P +++ Q
Sbjct: 389 TARRFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q5E8V3|UBIB_VIBF1 Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=ubiB PE=3 SV=1
Length = 544
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 197/397 (49%), Gaps = 36/397 (9%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
LR + +G +IK GQ +++ LFPP ++ D+ PF G++ + +E +LG
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQV--APFDGQLAKDQMEMELG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
P+++ + D P+ASAS+AQVH A+L+ S ++V+KV++P I V+ +D+ +Y +AR
Sbjct: 115 GPLDNWFTDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMAR 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
++E PE R V ++++ +++L+E+D ++EA+N RR E + + P+V
Sbjct: 175 LVEQHIPEARRLKPVKVIEEYEKTLLDELDLRREASNAMQLRRNFEG---SEELYVPEVI 231
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
S+ ++ ER+YG+ ++D++ + ++ + ++V+F + FHAD+H G
Sbjct: 232 LDLSSEHLMVSERIYGIQVSDIEQLERNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPG 291
Query: 365 NLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATD 419
N+++ D IG LD GIVG ++ + + L +Y +A ++ G
Sbjct: 292 NVFVNPDNPENPQWIG-LDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVP 350
Query: 420 KDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLL 479
D + + F + + E + A G E + L+L
Sbjct: 351 ADTNVEEFEFAIRMV--------CEPIFAKPLG---------------EISFGHVLLNLF 387
Query: 480 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 516
+ + ++ + LL K LLY + R L P +++
Sbjct: 388 NTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDL 424
>sp|Q7VN62|UBIB_HAEDU Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=ubiB PE=3 SV=1
Length = 542
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 197/405 (48%), Gaps = 44/405 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G +IKLGQ +A+ LF P ++ D PF G++ R ++E LG
Sbjct: 57 LRLALQELGPVWIKLGQMLATRRDLFEPALADQLALLQDSV--APFDGKLARKIIEQALG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVY 240
+E+ ++ D +ASAS+AQVH A +Q +VV+KV++P IE ++ AD+ +Y
Sbjct: 115 NTLETWFDDFDEQALASASIAQVHTATFNKNQPLAGQNVVLKVIRPDIEHIIKADIALMY 174
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A+++ +L+ + R +V++ +++L+E+D +E AN R E +
Sbjct: 175 QLAKLIPYLSDDAKRLRATEVVREYEKTLLDELDLTREMANAIRLRNNFEN---SEMLYV 231
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITA---LNVWFGSLLACETF 357
P +Y + V+ MER+YG+P++D I++L + N + A + V+F + F
Sbjct: 232 PAMYPDFCHKNVIVMERIYGIPVSD---IATLTENGTNMKLLAERGVQVFFTQVFRDSFF 288
Query: 358 HADVHAGNLWL----LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALI 413
HAD+HAGN+++ D + +D GIVG ++ + + +Y +A I
Sbjct: 289 HADMHAGNIFVNPNHPEDPQYIGIDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHI 348
Query: 414 EMGATDKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNA 473
E G T D D AF E+ F ++ E + A + E
Sbjct: 349 ESGWTPADTDVDAF----EEAFRTV----CEPIFAKP---------------LAEISFGQ 385
Query: 474 LFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+ L+L V+ + ++ + LL K LLY + R + P +++ Q
Sbjct: 386 VLLNLFNVARQFNMEVQPQLVLLQKTLLYIEGLGRQVYPALDLWQ 430
>sp|B5FF80|UBIB_VIBFM Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain MJ11) GN=ubiB PE=3 SV=1
Length = 544
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 197/397 (49%), Gaps = 36/397 (9%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLG 184
LR + +G +IK GQ +++ LFPP ++ D+ PF G++ + +E +LG
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQV--APFDGQLAKDQMEMELG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
P+++ + D P+ASAS+AQVH A+L+ S ++V+KV++P I V+ +D+ +Y +AR
Sbjct: 115 GPLDNWFTDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMAR 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
++E PE R V ++++ +++L+E+D ++EA+N RR E + + P+V
Sbjct: 175 LVEQHIPEARRLKPVEVIEEYEKTLLDELDLRREASNAMQLRRNFEG---SEELYVPEVI 231
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
S+ ++ ER+YG+ ++D++ + ++ + ++V+F + FHAD+H G
Sbjct: 232 LDLSSEHLMVSERIYGIQVSDIEQLEKNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPG 291
Query: 365 NLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATD 419
N+++ D IG LD GIVG ++ + + L +Y +A ++ G
Sbjct: 292 NVFVNPDNPENPQWIG-LDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVP 350
Query: 420 KDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLL 479
D + + F + + E + A G E + L+L
Sbjct: 351 ADTNVEEFEFAIRMV--------CEPIFAKPLG---------------EISFGHVLLNLF 387
Query: 480 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 516
+ + ++ + LL K LLY + R L P +++
Sbjct: 388 NTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDL 424
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 8/294 (2%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LRR E +G ++K GQ +++ L P + +E + D+ P R + E L P
Sbjct: 55 LRRALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEESLKSP 114
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+ ++ P+ASAS+AQVH A L+ + +VV+KV++PGIE + D+ + +VAR++
Sbjct: 115 VSELFADFQTYPMASASIAQVHAATLKNGK-EVVVKVIRPGIEKTIRLDIALMLLVARLV 173
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E + R V +VKD ++++E+D ++EAAN +R L P+VY
Sbjct: 174 ENYWEDGKRLHPVEVVKDYEHTIIDELDLQREAANTSQLKRNFAGSELI---YIPEVYWE 230
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+ RVL MER+YGVP+ D++ + + + + ++F + FHAD+H GN+
Sbjct: 231 MTHSRVLVMERIYGVPIADVEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHPGNI 290
Query: 367 WL----LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG 416
++ + R +D GIVG ++P+ + + L + +Y +A I G
Sbjct: 291 FVDVSNPANPRYIAIDCGIVGTLTPEDQSYLARNLLAFFRRDYRQVAVLHISSG 344
>sp|Q088I0|UBIB_SHEFN Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
frigidimarina (strain NCIMB 400) GN=ubiB PE=3 SV=1
Length = 549
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 196/399 (49%), Gaps = 36/399 (9%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
L+ + +G YIKLGQ +++ L E+ + DR P + + +LG P
Sbjct: 57 LKLAMQDLGPVYIKLGQMLSTRRDLLDDEWAYQLAMLQDRVPPFDSALAREAIEAELGAP 116
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
I + ++ + TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A +L
Sbjct: 117 IATYFDDFNDTPLASASISQVHTATLKSNGKAVVLKVLRPNVEQQILADLQLMTQTANLL 176
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
E L + +R +++D R ++L E++ K EA N R +G + P VY+
Sbjct: 177 ETLLGDGNRLRPAEVIEDYRTTILGELNLKLEALNAIKLRNNF--LG-SNSLYVPFVYEE 233
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
S +R++ MER+YG+P++D +++ + ++ + + ++F + FHAD+H GN+
Sbjct: 234 HSYQRLMVMERIYGIPVSDTEALRAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNI 293
Query: 367 WLLRDG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATD 419
++ R+ IG LD GI+G ++ K + A + FLA +Y +A IE G
Sbjct: 294 FISREHPDDPFYIG-LDCGIMGTLTEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVS 350
Query: 420 KDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLL 479
+ D AF + ++ + + N +DE + L+L
Sbjct: 351 EHTDIIAFEQAVKVVCEPM-----------------------FNKPLDEISFGHVLLELF 387
Query: 480 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
R + + + + LL K LLY + R L P +++ Q
Sbjct: 388 RTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q87TH2|UBIB_VIBPA Probable ubiquinone biosynthesis protein UbiB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=ubiB PE=3 SV=1
Length = 544
Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 198/403 (49%), Gaps = 44/403 (10%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G +IK GQ +++ LFPP + D+ PF GE+ + +E LG
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQV--APFDGELAKQQMEKALG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVAR 244
P+E+ + D P+ASAS+AQVH ARL+ + +VV+KV++P I V+ +DL ++ +AR
Sbjct: 115 GPLENWFTEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMAR 174
Query: 245 ILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY 304
I+ PE R V +V++ +++L+E+D ++EAAN RR E + + P+V+
Sbjct: 175 IVAGAMPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEG---SEELYVPEVF 231
Query: 305 QHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAG 364
S V+ ER+YG+ ++D++ + + ++ + ++V+F + FHAD+H G
Sbjct: 232 PDFSNETVMVSERIYGIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPG 291
Query: 365 NLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG--A 417
N+++ + IG LD GIVG ++ + + + +Y +A ++ G
Sbjct: 292 NVFVKPEHPENPMWIG-LDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAELHVDSGWVP 350
Query: 418 TDKDIDAKAFARDL--EKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALF 475
D ++D FA + E IF+ + E +
Sbjct: 351 ADTNVDEFEFAIRIVCEPIFAK---------------------------PLCEISFGHVL 383
Query: 476 LDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
L+L + + ++ + LL K LLY + R L P +++ +
Sbjct: 384 LNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWE 426
>sp|A3N3S2|UBIB_ACTP2 Probable ubiquinone biosynthesis protein UbiB OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=ubiB PE=3
SV=1
Length = 544
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/407 (27%), Positives = 197/407 (48%), Gaps = 48/407 (11%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LG 184
LR + +G +IKLGQ +++ LF PE E+ D PF G+ R ++E LG
Sbjct: 57 LRLALQELGPVWIKLGQMLSTRRDLFEPELAEQLALLQDSVE--PFDGKSARQIIEQALG 114
Query: 185 RPIESVYEYVDPTPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVY 240
+E+ ++ D +ASAS+AQVH A+ +Q DVV+KV++P IE ++ AD+ +Y
Sbjct: 115 GSLETWFDEFDEQALASASIAQVHTAKFNQNQPLAGKDVVLKVIRPDIEPIIKADIALMY 174
Query: 241 VVARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATA 300
+A + L+ + R +V++ +++L+E+D +E AN R E +
Sbjct: 175 RLASWIPRLSNDAKRLRATEVVREYEKTLLDELDLTREMANAIRLRNNFEN---SEMLYV 231
Query: 301 PKVYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHAD 360
P++YQ + V+ MER+YG+P++D++++ + + + + V+F + FHAD
Sbjct: 232 PEMYQDFCHKNVIVMERIYGIPVSDVETLKANGTDMKLLAERGVQVFFTQVFRDSFFHAD 291
Query: 361 VHAGNLWLLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEM 415
+HAGN+++ + IG +D GIVG ++ + + +Y +A +E
Sbjct: 292 MHAGNIFVNPNHPENPQYIG-IDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVES 350
Query: 416 GAT--DKDIDA--KAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQM 471
G T D DIDA +AF E IF+ + E
Sbjct: 351 GWTPPDTDIDAFEQAFREVCEPIFAK---------------------------PLSEISF 383
Query: 472 NALFLDLLRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+ L+L V+ + ++ + LL K LLY + R + P +++ Q
Sbjct: 384 GHVLLNLFNVAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQ 430
>sp|A4WFY3|UBIB_ENT38 Probable ubiquinone biosynthesis protein UbiB OS=Enterobacter sp.
(strain 638) GN=ubiB PE=3 SV=1
Length = 546
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 193/397 (48%), Gaps = 31/397 (7%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGR- 185
LR + +G +IK GQ +++ LFPP+ ++ DR K+ + E +G
Sbjct: 57 LRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDRVAPFDGARAKQQIEEAMGNI 116
Query: 186 PIESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARI 245
P+E+ ++ D P+ASAS+AQVH ARL+ + ++VIKV++P I V+ AD+ +Y +AR
Sbjct: 117 PVETWFDDFDIKPLASASIAQVHTARLKENGKEIVIKVIRPDILPVIRADMKLIYRLARW 176
Query: 246 LEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQ 305
+ L P+ R + +V++ +++++E++ +E+AN RR E + P+VY
Sbjct: 177 VPRLLPDGRRLRPMEVVREYEKTLIDELNLLRESANAIQLRRNFENSPML---YVPEVYS 233
Query: 306 HCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGN 365
++ ++ MER+YG+P++D+ ++ + ++ + + V+F + FHAD+H GN
Sbjct: 234 DYCSQNMMVMERIYGIPVSDIVALENQGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGN 293
Query: 366 LWL----LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 421
+++ D + +D GIVG ++ + + + +Y +A ++ G D
Sbjct: 294 IFVSYEHPEDPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPD 353
Query: 422 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRV 481
+ + F + + I E + E + L+L
Sbjct: 354 TNVEEFEFAIRTVCEPIFEKP-----------------------LSEISFGHVLLNLFNT 390
Query: 482 SESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+ + ++ + LL K LLY + R L P +++ +
Sbjct: 391 ARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWK 427
>sp|B2VG47|UBIB_ERWT9 Probable ubiquinone biosynthesis protein UbiB OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=ubiB PE=3
SV=1
Length = 545
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 188/396 (47%), Gaps = 30/396 (7%)
Query: 127 LRRLFERMGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRP 186
LR E++G +IK GQ +++ LFPP ++ D+ + K+ + LG P
Sbjct: 57 LRLALEQLGPVWIKFGQMMSTRRDLFPPHIADQLAMLQDKVAPFDGAQAKKLIEHSLGAP 116
Query: 187 IESVYEYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARIL 246
+ES ++ D P+ASAS+AQVH A L+ + +VVIKV++P I V+ AD+ +Y +AR +
Sbjct: 117 VESQFDDFDIVPLASASIAQVHTATLKENGREVVIKVIRPDILPVIKADMKLIYRLARWV 176
Query: 247 EFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 306
L P+ R +V D +++L+E++ +EAAN RR A G + P++Y
Sbjct: 177 PRLLPDGRRLRPQEVVADYEKTLLDELNLLREAANAIQLRRNF-ADG--QMLYVPEIYSD 233
Query: 307 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 366
+ +L MER+YG+P++D+ ++ + + + V+F + FHAD+H GN+
Sbjct: 234 YCSENMLVMERIYGIPISDVATLEQHGVNMKLLAERGVQVFFTQVFRDSFFHADMHPGNI 293
Query: 367 WLL----RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDI 422
++ D + +D GIVG ++ + + + +Y +A ++ G D
Sbjct: 294 FVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPADT 353
Query: 423 DAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVS 482
+ + F + + I E + E + L+L +
Sbjct: 354 NVEDFEFAIRTVCEPIFEKP-----------------------LAEISFGHVLLNLFNTA 390
Query: 483 ESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 518
+ ++ + LL K LLY + R L P +++ +
Sbjct: 391 RRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWK 426
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,006,980
Number of Sequences: 539616
Number of extensions: 7577058
Number of successful extensions: 23146
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 22467
Number of HSP's gapped (non-prelim): 244
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)