Query 009335
Match_columns 537
No_of_seqs 177 out of 253
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 11:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02705 beta-amylase 100.0 6E-202 1E-206 1587.2 44.7 492 27-535 34-533 (681)
2 PLN02905 beta-amylase 100.0 5E-181 1E-185 1430.3 44.1 470 55-535 68-551 (702)
3 PLN02803 beta-amylase 100.0 1E-128 3E-133 1018.3 33.6 291 244-535 81-375 (548)
4 PLN00197 beta-amylase; Provisi 100.0 1E-128 3E-133 1020.5 32.1 296 239-535 96-396 (573)
5 PLN02801 beta-amylase 100.0 3E-128 6E-133 1011.7 31.3 290 245-535 12-303 (517)
6 PLN02161 beta-amylase 100.0 1E-125 3E-130 991.4 31.6 294 241-535 84-392 (531)
7 PF01373 Glyco_hydro_14: Glyco 100.0 5E-114 1E-118 888.4 22.2 270 252-536 1-280 (402)
8 PF05687 DUF822: Plant protein 100.0 5.4E-42 1.2E-46 313.7 10.1 130 62-204 2-133 (150)
9 PF02449 Glyco_hydro_42: Beta- 99.9 1.1E-23 2.5E-28 212.7 11.9 212 268-534 8-237 (374)
10 COG1874 LacA Beta-galactosidas 99.8 9.9E-18 2.1E-22 183.9 16.5 206 267-527 27-253 (673)
11 PF01301 Glyco_hydro_35: Glyco 98.9 9E-09 1.9E-13 104.6 10.2 116 268-416 22-146 (319)
12 PLN03059 beta-galactosidase; P 98.4 2.8E-06 6.2E-11 96.6 14.4 147 267-462 56-213 (840)
13 TIGR03356 BGL beta-galactosida 98.1 1E-05 2.3E-10 85.4 9.6 111 266-416 50-164 (427)
14 PF00232 Glyco_hydro_1: Glycos 97.9 4E-05 8.7E-10 81.2 9.5 101 266-406 54-158 (455)
15 PRK09852 cryptic 6-phospho-bet 97.6 0.00032 7E-09 75.6 10.2 112 266-416 67-183 (474)
16 PRK13511 6-phospho-beta-galact 97.5 0.00036 7.8E-09 74.9 9.1 110 266-416 50-163 (469)
17 PRK15014 6-phospho-beta-glucos 97.4 0.00052 1.1E-08 74.0 9.1 112 266-416 65-181 (477)
18 PF00150 Cellulase: Cellulase 97.4 0.0013 2.8E-08 62.3 10.4 123 270-407 21-164 (281)
19 KOG0496 Beta-galactosidase [Ca 97.4 0.00086 1.9E-08 74.9 9.9 143 267-419 46-203 (649)
20 PLN02814 beta-glucosidase 97.3 0.001 2.2E-08 72.5 10.0 111 266-415 73-187 (504)
21 TIGR01233 lacG 6-phospho-beta- 97.3 0.00089 1.9E-08 72.0 9.4 110 266-416 49-162 (467)
22 PF14871 GHL6: Hypothetical gl 97.3 0.004 8.6E-08 57.0 12.1 108 274-404 4-121 (132)
23 PLN02998 beta-glucosidase 97.2 0.0012 2.6E-08 71.8 9.2 112 266-416 78-193 (497)
24 PLN02849 beta-glucosidase 97.2 0.0014 3E-08 71.4 9.5 112 266-416 75-190 (503)
25 PRK09593 arb 6-phospho-beta-gl 97.1 0.0027 6E-08 68.6 9.8 112 266-416 69-185 (478)
26 PRK09589 celA 6-phospho-beta-g 97.0 0.0027 5.9E-08 68.6 9.4 112 266-416 63-179 (476)
27 COG2723 BglB Beta-glucosidase/ 96.9 0.012 2.6E-07 64.0 12.9 132 265-444 54-190 (460)
28 PF02638 DUF187: Glycosyl hydr 96.8 0.12 2.5E-06 53.2 18.7 204 266-535 15-232 (311)
29 PLN02705 beta-amylase 96.0 0.011 2.3E-07 66.3 6.0 46 384-434 437-482 (681)
30 smart00633 Glyco_10 Glycosyl h 96.0 0.018 3.9E-07 56.6 6.7 46 293-349 3-48 (254)
31 PF01229 Glyco_hydro_39: Glyco 94.8 0.087 1.9E-06 56.8 7.8 99 270-405 39-148 (486)
32 PF07745 Glyco_hydro_53: Glyco 93.4 0.16 3.4E-06 53.3 6.1 53 274-331 28-80 (332)
33 PF00331 Glyco_hydro_10: Glyco 93.1 0.33 7.1E-06 49.9 7.8 63 275-350 26-92 (320)
34 KOG0626 Beta-glucosidase, lact 92.5 0.59 1.3E-05 52.1 9.2 102 266-406 87-193 (524)
35 cd03311 CIMS_C_terminal_like C 91.9 2.2 4.7E-05 43.4 11.8 129 270-400 155-293 (332)
36 PRK11572 copper homeostasis pr 91.7 0.59 1.3E-05 47.6 7.5 74 248-332 51-127 (248)
37 PRK10785 maltodextrin glucosid 91.3 5.9 0.00013 44.4 15.4 157 268-462 177-364 (598)
38 PF14488 DUF4434: Domain of un 90.8 0.91 2E-05 43.1 7.4 57 267-325 17-83 (166)
39 cd03465 URO-D_like The URO-D _ 90.4 0.5 1.1E-05 47.2 5.6 80 272-364 170-252 (330)
40 TIGR02104 pulA_typeI pullulana 90.1 3.6 7.8E-05 46.0 12.3 64 270-333 164-256 (605)
41 cd06592 GH31_glucosidase_KIAA1 90.1 4 8.7E-05 41.6 11.8 83 267-365 27-116 (303)
42 cd00465 URO-D_CIMS_like The UR 88.9 0.78 1.7E-05 45.4 5.5 62 270-335 144-210 (306)
43 PRK02412 aroD 3-dehydroquinate 88.4 4.1 8.8E-05 40.8 10.2 123 262-424 86-211 (253)
44 PF10566 Glyco_hydro_97: Glyco 87.7 0.51 1.1E-05 48.5 3.5 105 244-375 82-186 (273)
45 cd04724 Tryptophan_synthase_al 87.1 5.8 0.00013 39.4 10.4 62 248-328 76-137 (242)
46 PF00128 Alpha-amylase: Alpha 86.4 1.7 3.6E-05 41.4 6.0 63 268-333 2-79 (316)
47 PF02065 Melibiase: Melibiase; 85.7 5.8 0.00013 42.7 10.2 79 267-349 55-144 (394)
48 PF03198 Glyco_hydro_72: Gluca 85.5 5.8 0.00013 42.0 9.9 127 266-422 49-185 (314)
49 PF03932 CutC: CutC family; I 85.2 1.3 2.7E-05 43.8 4.6 73 246-329 48-123 (201)
50 PF00290 Trp_syntA: Tryptophan 85.2 6 0.00013 40.5 9.6 111 246-402 85-197 (259)
51 TIGR01463 mtaA_cmuA methyltran 84.9 1.7 3.6E-05 44.3 5.5 59 272-334 182-243 (340)
52 cd00502 DHQase_I Type I 3-dehy 84.8 8.7 0.00019 37.3 10.1 122 260-424 65-188 (225)
53 TIGR01093 aroD 3-dehydroquinat 84.3 9.1 0.0002 37.4 10.1 111 274-425 82-194 (228)
54 CHL00200 trpA tryptophan synth 84.1 9.4 0.0002 38.9 10.4 90 247-367 90-180 (263)
55 TIGR03234 OH-pyruv-isom hydrox 83.9 6.2 0.00013 38.1 8.7 43 271-325 15-57 (254)
56 PLN02361 alpha-amylase 83.7 3.8 8.2E-05 44.2 7.8 66 268-336 27-106 (401)
57 PRK01060 endonuclease IV; Prov 83.3 2.3 5E-05 41.6 5.6 64 254-324 1-64 (281)
58 COG3142 CutC Uncharacterized p 83.0 2.1 4.7E-05 43.7 5.3 76 247-333 50-128 (241)
59 PF03659 Glyco_hydro_71: Glyco 82.9 3.4 7.4E-05 44.2 7.1 56 268-330 15-70 (386)
60 PLN02229 alpha-galactosidase 82.7 2.9 6.2E-05 45.7 6.5 70 267-337 77-160 (427)
61 smart00642 Aamy Alpha-amylase 81.9 6.3 0.00014 37.2 7.7 69 266-334 15-97 (166)
62 PRK13111 trpA tryptophan synth 81.7 8.2 0.00018 39.2 8.9 89 247-366 88-177 (258)
63 PRK10150 beta-D-glucuronidase; 80.8 64 0.0014 36.0 16.1 64 247-325 288-354 (604)
64 cd03309 CmuC_like CmuC_like. P 80.4 3.3 7.2E-05 43.0 5.8 56 274-333 159-221 (321)
65 cd03308 CmuA_CmuC_like CmuA_Cm 80.4 2.9 6.3E-05 44.0 5.4 82 248-333 172-277 (378)
66 TIGR00542 hxl6Piso_put hexulos 80.3 3.3 7.2E-05 40.7 5.5 56 268-326 14-71 (279)
67 COG3867 Arabinogalactan endo-1 79.4 4.6 0.0001 43.2 6.4 57 273-331 66-126 (403)
68 TIGR00433 bioB biotin syntheta 79.3 4.6 0.0001 40.0 6.1 54 273-328 123-179 (296)
69 TIGR01515 branching_enzym alph 79.0 4.3 9.4E-05 45.5 6.5 55 269-329 155-228 (613)
70 COG2730 BglC Endoglucanase [Ca 78.6 10 0.00023 40.3 8.9 101 272-381 75-192 (407)
71 PF01055 Glyco_hydro_31: Glyco 78.3 8 0.00017 40.8 7.9 84 266-365 39-132 (441)
72 PLN02591 tryptophan synthase 78.2 12 0.00025 38.1 8.7 89 247-366 77-166 (250)
73 PRK08195 4-hyroxy-2-oxovalerat 77.5 13 0.00029 38.9 9.2 76 274-369 92-172 (337)
74 cd03307 Mta_CmuA_like MtaA_Cmu 76.9 3.8 8.3E-05 41.7 4.9 56 273-334 174-232 (326)
75 PRK13209 L-xylulose 5-phosphat 76.9 5.5 0.00012 39.0 5.8 66 255-326 8-76 (283)
76 COG1649 Uncharacterized protei 76.7 48 0.001 36.5 13.3 122 265-404 59-196 (418)
77 TIGR03217 4OH_2_O_val_ald 4-hy 76.7 16 0.00034 38.4 9.4 77 273-369 90-171 (333)
78 TIGR00262 trpA tryptophan synt 76.0 36 0.00077 34.4 11.4 62 248-328 87-148 (256)
79 TIGR02402 trehalose_TreZ malto 74.6 7.9 0.00017 43.0 6.9 61 268-333 109-186 (542)
80 PRK06252 methylcobalamin:coenz 74.0 4 8.6E-05 41.5 4.2 56 273-334 183-241 (339)
81 PF01487 DHquinase_I: Type I 3 73.6 45 0.00098 32.2 11.0 128 253-424 57-188 (224)
82 COG3693 XynA Beta-1,4-xylanase 73.3 3.2 7E-05 44.3 3.4 52 286-350 59-115 (345)
83 PF01261 AP_endonuc_2: Xylose 72.9 3.5 7.6E-05 37.2 3.1 46 276-326 1-46 (213)
84 PRK09856 fructoselysine 3-epim 71.4 11 0.00024 36.7 6.3 53 271-330 14-70 (275)
85 cd06565 GH20_GcnA-like Glycosy 71.0 39 0.00084 34.7 10.4 63 265-327 12-80 (301)
86 PF10566 Glyco_hydro_97: Glyco 70.9 11 0.00024 39.0 6.5 69 267-336 29-101 (273)
87 cd06593 GH31_xylosidase_YicI Y 69.9 13 0.00028 37.7 6.6 88 266-367 20-114 (308)
88 PLN02808 alpha-galactosidase 69.6 8.8 0.00019 41.5 5.7 62 267-328 46-118 (386)
89 PHA00442 host recBCD nuclease 69.3 7.8 0.00017 32.0 4.0 27 274-319 30-56 (59)
90 PRK12313 glycogen branching en 68.3 13 0.00027 41.9 6.8 62 266-333 166-246 (633)
91 PLN02389 biotin synthase 68.3 11 0.00023 40.4 6.0 52 273-325 178-231 (379)
92 TIGR02103 pullul_strch alpha-1 68.3 93 0.002 37.4 14.0 26 308-333 405-430 (898)
93 PF01208 URO-D: Uroporphyrinog 68.2 8 0.00017 39.2 4.8 79 274-364 186-265 (343)
94 TIGR02102 pullulan_Gpos pullul 68.2 11 0.00023 45.9 6.5 62 268-329 478-577 (1111)
95 PRK10933 trehalose-6-phosphate 68.1 11 0.00024 41.9 6.3 66 266-333 29-107 (551)
96 PRK13125 trpA tryptophan synth 67.5 82 0.0018 31.3 11.6 64 248-328 74-137 (244)
97 cd07944 DRE_TIM_HOA_like 4-hyd 64.9 54 0.0012 33.2 9.9 78 273-370 85-167 (266)
98 PLN02433 uroporphyrinogen deca 64.7 16 0.00035 37.8 6.3 76 273-364 182-262 (345)
99 TIGR02403 trehalose_treC alpha 64.5 22 0.00047 39.5 7.6 66 266-333 23-101 (543)
100 PRK09441 cytoplasmic alpha-amy 64.3 18 0.00039 39.2 6.8 67 268-334 20-108 (479)
101 PRK13210 putative L-xylulose 5 63.9 19 0.00041 35.1 6.3 53 270-326 16-71 (284)
102 PLN02692 alpha-galactosidase 63.5 14 0.0003 40.5 5.7 61 267-327 70-141 (412)
103 cd07943 DRE_TIM_HOA 4-hydroxy- 63.0 46 0.00099 33.2 8.9 45 274-328 89-133 (263)
104 TIGR02456 treS_nterm trehalose 62.7 25 0.00053 38.9 7.6 65 266-333 24-102 (539)
105 PRK13398 3-deoxy-7-phosphohept 62.6 35 0.00075 35.0 8.1 65 264-330 35-99 (266)
106 cd00717 URO-D Uroporphyrinogen 62.1 14 0.0003 37.7 5.2 78 273-364 180-260 (335)
107 PRK08508 biotin synthase; Prov 62.0 52 0.0011 33.4 9.2 54 267-325 40-93 (279)
108 PRK10658 putative alpha-glucos 61.9 56 0.0012 37.6 10.4 86 268-367 281-373 (665)
109 PRK14706 glycogen branching en 61.9 19 0.00041 41.2 6.7 59 266-329 163-239 (639)
110 PRK10340 ebgA cryptic beta-D-g 61.6 46 0.00099 40.1 10.0 65 247-325 330-396 (1021)
111 COG1856 Uncharacterized homolo 61.0 12 0.00026 38.8 4.4 58 273-330 100-161 (275)
112 PF02836 Glyco_hydro_2_C: Glyc 60.6 17 0.00038 36.4 5.5 51 265-329 31-81 (298)
113 PF01791 DeoC: DeoC/LacD famil 60.4 6.9 0.00015 38.2 2.6 53 273-326 79-131 (236)
114 PLN02877 alpha-amylase/limit d 60.4 12 0.00027 44.8 5.1 59 271-329 374-488 (970)
115 PRK15108 biotin synthase; Prov 60.0 1.4E+02 0.0031 31.4 12.2 54 267-325 76-129 (345)
116 cd01299 Met_dep_hydrolase_A Me 58.7 37 0.0008 34.0 7.5 64 266-333 116-182 (342)
117 PF13200 DUF4015: Putative gly 58.6 1.2E+02 0.0026 32.2 11.4 128 265-428 8-150 (316)
118 PRK00115 hemE uroporphyrinogen 58.6 16 0.00035 37.7 5.1 79 272-364 188-269 (346)
119 PRK09989 hypothetical protein; 58.3 22 0.00047 34.7 5.7 43 271-325 16-58 (258)
120 cd06591 GH31_xylosidase_XylS X 57.5 28 0.00062 35.8 6.6 87 266-367 20-114 (319)
121 PLN00196 alpha-amylase; Provis 57.1 37 0.0008 37.0 7.6 63 268-333 42-118 (428)
122 PLN02960 alpha-amylase 57.1 30 0.00066 41.3 7.4 63 266-333 412-492 (897)
123 cd06589 GH31 The enzymes of gl 57.0 34 0.00073 34.2 6.8 71 266-353 20-99 (265)
124 PRK04326 methionine synthase; 56.9 22 0.00048 36.3 5.7 78 270-364 161-239 (330)
125 cd03310 CIMS_like CIMS - Cobal 56.9 46 0.00099 33.5 7.8 59 270-334 151-211 (321)
126 cd06604 GH31_glucosidase_II_Ma 56.7 61 0.0013 33.6 8.8 87 266-366 20-113 (339)
127 PRK09525 lacZ beta-D-galactosi 56.3 61 0.0013 39.2 9.8 65 247-325 346-412 (1027)
128 PLN02475 5-methyltetrahydropte 56.2 36 0.00079 39.9 7.8 82 270-364 586-674 (766)
129 PRK05402 glycogen branching en 55.9 30 0.00065 39.9 7.0 60 265-329 260-337 (726)
130 PF01717 Meth_synt_2: Cobalami 55.9 25 0.00054 35.9 5.8 86 270-367 154-245 (324)
131 PRK12595 bifunctional 3-deoxy- 55.3 47 0.001 35.5 7.9 111 249-382 118-229 (360)
132 PF01026 TatD_DNase: TatD rela 55.2 60 0.0013 32.0 8.2 46 272-330 16-62 (255)
133 PRK07094 biotin synthase; Prov 55.2 19 0.00041 36.5 4.8 52 273-325 129-183 (323)
134 smart00518 AP2Ec AP endonuclea 54.8 34 0.00073 33.4 6.3 52 271-324 11-62 (273)
135 TIGR03699 mena_SCO4550 menaqui 54.6 11 0.00023 38.8 2.9 53 273-325 143-199 (340)
136 TIGR03551 F420_cofH 7,8-dideme 53.6 12 0.00026 38.8 3.1 56 273-328 141-200 (343)
137 cd03174 DRE_TIM_metallolyase D 53.5 1.2E+02 0.0025 29.4 9.7 60 273-332 77-141 (265)
138 cd06599 GH31_glycosidase_Aec37 53.3 36 0.00078 35.1 6.5 86 269-366 28-120 (317)
139 PRK14511 maltooligosyl trehalo 53.0 50 0.0011 39.5 8.3 65 268-333 18-95 (879)
140 TIGR01371 met_syn_B12ind 5-met 52.6 73 0.0016 37.3 9.4 118 270-400 575-707 (750)
141 PRK00957 methionine synthase; 52.1 29 0.00063 35.2 5.6 79 270-366 144-223 (305)
142 cd07491 Peptidases_S8_7 Peptid 51.3 1E+02 0.0022 30.7 9.1 72 267-347 86-159 (247)
143 PRK08445 hypothetical protein; 51.3 19 0.00041 37.9 4.2 57 273-329 144-204 (348)
144 COG0620 MetE Methionine syntha 51.1 37 0.00081 35.9 6.3 64 270-339 158-227 (330)
145 PTZ00445 p36-lilke protein; Pr 51.0 38 0.00083 34.5 6.1 62 265-326 24-97 (219)
146 COG1523 PulA Type II secretory 50.3 32 0.00069 40.1 6.1 90 234-335 173-294 (697)
147 PRK13575 3-dehydroquinate dehy 50.2 1.3E+02 0.0029 30.2 9.8 46 274-330 87-133 (238)
148 TIGR00423 radical SAM domain p 50.0 18 0.0004 36.8 3.8 56 272-327 106-165 (309)
149 PRK09875 putative hydrolase; P 49.9 56 0.0012 33.9 7.3 67 263-349 27-94 (292)
150 PF14488 DUF4434: Domain of un 49.6 1.1E+02 0.0025 29.1 8.8 142 284-463 1-153 (166)
151 PRK09505 malS alpha-amylase; R 49.6 40 0.00088 39.0 6.8 62 268-329 228-314 (683)
152 cd08592 PI-PLCc_gamma Catalyti 49.2 39 0.00085 34.4 5.9 66 263-331 23-99 (229)
153 PRK09997 hydroxypyruvate isome 48.7 29 0.00063 33.9 4.8 43 271-325 16-58 (258)
154 TIGR02631 xylA_Arthro xylose i 48.4 23 0.0005 37.9 4.4 56 268-328 30-89 (382)
155 PLN02447 1,4-alpha-glucan-bran 48.2 48 0.001 39.1 7.1 62 266-332 246-326 (758)
156 PRK12677 xylose isomerase; Pro 48.0 31 0.00067 37.0 5.2 52 271-327 32-87 (384)
157 PRK04302 triosephosphate isome 47.1 48 0.001 32.3 6.0 44 274-325 76-119 (223)
158 TIGR03700 mena_SCO4494 putativ 47.1 21 0.00046 37.2 3.8 56 272-327 149-208 (351)
159 PF00682 HMGL-like: HMGL-like 46.2 1.6E+02 0.0036 28.3 9.4 108 268-404 65-181 (237)
160 cd07948 DRE_TIM_HCS Saccharomy 46.2 1.3E+02 0.0027 30.7 9.0 53 274-328 75-133 (262)
161 PRK15108 biotin synthase; Prov 45.9 36 0.00077 35.8 5.2 51 273-324 136-188 (345)
162 PRK08508 biotin synthase; Prov 45.8 28 0.00061 35.3 4.3 67 273-350 102-177 (279)
163 cd06568 GH20_SpHex_like A subg 45.8 3.1E+02 0.0068 28.8 12.0 128 265-404 13-186 (329)
164 PLN02784 alpha-amylase 45.7 48 0.001 39.7 6.7 63 269-334 520-596 (894)
165 cd02742 GH20_hexosaminidase Be 45.4 3.5E+02 0.0076 27.8 12.1 131 265-405 11-183 (303)
166 PF13653 GDPD_2: Glycerophosph 44.9 22 0.00048 25.7 2.5 18 273-290 10-27 (30)
167 smart00812 Alpha_L_fucos Alpha 44.9 1.1E+02 0.0024 33.0 8.7 96 267-407 81-190 (384)
168 PF12868 DUF3824: Domain of un 44.8 5.6 0.00012 37.5 -0.7 10 73-82 36-45 (137)
169 PRK12568 glycogen branching en 44.8 57 0.0012 38.3 7.0 59 266-329 265-341 (730)
170 TIGR03849 arch_ComA phosphosul 44.2 52 0.0011 33.7 5.9 49 269-325 70-118 (237)
171 TIGR02090 LEU1_arch isopropylm 44.0 93 0.002 32.9 8.0 135 272-423 73-222 (363)
172 KOG4246 Predicted DNA-binding 43.7 20 0.00042 42.8 3.1 17 66-82 321-337 (1194)
173 TIGR00676 fadh2 5,10-methylene 43.0 2.4E+02 0.0051 28.7 10.3 154 267-462 12-183 (272)
174 TIGR02401 trehalose_TreY malto 42.8 92 0.002 37.2 8.4 65 268-333 14-91 (825)
175 TIGR01464 hemE uroporphyrinoge 42.8 49 0.0011 33.9 5.6 76 274-364 184-263 (338)
176 COG1082 IolE Sugar phosphate i 42.6 47 0.001 32.0 5.1 53 269-328 14-66 (274)
177 COG0159 TrpA Tryptophan syntha 42.4 2.2E+02 0.0047 29.8 10.1 91 246-367 92-183 (265)
178 PRK06256 biotin synthase; Vali 42.1 39 0.00085 34.5 4.8 47 273-325 152-205 (336)
179 cd06595 GH31_xylosidase_XylS-l 42.0 75 0.0016 32.4 6.7 62 267-328 22-95 (292)
180 PF02679 ComA: (2R)-phospho-3- 41.5 39 0.00085 34.7 4.6 66 247-325 66-131 (244)
181 cd01310 TatD_DNAse TatD like p 41.4 2.3E+02 0.005 26.7 9.4 47 271-330 16-62 (251)
182 PRK05222 5-methyltetrahydropte 41.3 41 0.00089 39.3 5.3 82 270-362 581-667 (758)
183 cd08598 PI-PLC1c_yeast Catalyt 41.3 53 0.0012 33.5 5.5 67 263-330 23-98 (231)
184 cd07937 DRE_TIM_PC_TC_5S Pyruv 40.9 69 0.0015 32.5 6.2 51 268-328 89-139 (275)
185 TIGR00677 fadh2_euk methylenet 40.8 62 0.0013 33.3 5.9 71 272-354 147-226 (281)
186 PRK00042 tpiA triosephosphate 40.6 48 0.001 33.8 5.1 43 275-325 78-124 (250)
187 cd08597 PI-PLCc_PRIP_metazoa C 39.8 50 0.0011 34.2 5.1 64 264-331 24-99 (260)
188 PRK12858 tagatose 1,6-diphosph 39.6 72 0.0016 34.0 6.3 53 274-326 110-162 (340)
189 COG1619 LdcA Uncharacterized p 39.5 89 0.0019 33.2 6.9 93 259-360 15-107 (313)
190 cd06598 GH31_transferase_CtsZ 39.4 88 0.0019 32.3 6.8 63 266-328 20-91 (317)
191 PRK09936 hypothetical protein; 39.1 61 0.0013 34.4 5.6 50 268-325 36-90 (296)
192 PLN03231 putative alpha-galact 38.9 46 0.001 35.9 4.8 58 268-325 16-104 (357)
193 TIGR02100 glgX_debranch glycog 38.9 54 0.0012 37.9 5.6 63 270-332 182-271 (688)
194 PRK07360 FO synthase subunit 2 38.7 45 0.00098 35.2 4.7 57 272-328 162-222 (371)
195 cd06600 GH31_MGAM-like This fa 38.1 89 0.0019 32.3 6.6 59 266-328 20-85 (317)
196 cd00945 Aldolase_Class_I Class 37.9 98 0.0021 28.0 6.2 55 268-327 63-120 (201)
197 PRK06233 hypothetical protein; 37.7 69 0.0015 34.0 5.9 97 270-367 171-281 (372)
198 PRK12331 oxaloacetate decarbox 37.1 86 0.0019 34.6 6.7 52 268-329 94-145 (448)
199 PRK03705 glycogen debranching 37.1 44 0.00096 38.4 4.6 51 275-329 184-264 (658)
200 PLN02389 biotin synthase 37.0 3.9E+02 0.0085 28.9 11.3 55 267-324 116-170 (379)
201 COG3250 LacZ Beta-galactosidas 36.6 61 0.0013 38.4 5.7 48 264-325 315-362 (808)
202 cd02801 DUS_like_FMN Dihydrour 36.5 67 0.0014 30.6 5.1 52 267-319 64-121 (231)
203 cd06597 GH31_transferase_CtsY 36.1 1.1E+02 0.0024 32.1 7.0 63 266-328 20-106 (340)
204 cd00958 DhnA Class I fructose- 36.1 58 0.0012 31.6 4.6 55 267-325 73-127 (235)
205 PRK06520 5-methyltetrahydropte 36.1 72 0.0016 33.9 5.7 67 270-337 170-247 (368)
206 PTZ00413 lipoate synthase; Pro 35.7 3E+02 0.0066 30.5 10.3 125 266-419 176-306 (398)
207 TIGR03822 AblA_like_2 lysine-2 35.7 2.5E+02 0.0054 29.2 9.4 109 274-407 188-299 (321)
208 PRK14705 glycogen branching en 35.5 73 0.0016 39.5 6.3 52 270-326 765-834 (1224)
209 COG2876 AroA 3-deoxy-D-arabino 35.0 84 0.0018 33.3 5.8 55 267-321 226-282 (286)
210 cd00598 GH18_chitinase-like Th 34.9 1.4E+02 0.0031 27.6 6.9 69 247-319 63-136 (210)
211 cd08629 PI-PLCc_delta1 Catalyt 34.7 90 0.002 32.5 6.0 64 264-330 24-98 (258)
212 PRK09121 5-methyltetrahydropte 34.6 63 0.0014 34.0 5.0 119 270-401 156-295 (339)
213 cd08625 PI-PLCc_beta3 Catalyti 34.5 88 0.0019 32.4 5.8 68 263-331 23-101 (258)
214 PRK15452 putative protease; Pr 34.1 44 0.00095 36.7 3.8 37 248-289 59-95 (443)
215 cd00287 ribokinase_pfkB_like r 34.1 1.6E+02 0.0034 26.6 6.8 75 274-364 41-118 (196)
216 cd07939 DRE_TIM_NifV Streptomy 34.0 2E+02 0.0043 28.7 8.1 53 273-325 72-128 (259)
217 cd08627 PI-PLCc_gamma1 Catalyt 34.0 73 0.0016 32.6 5.1 68 263-331 23-99 (229)
218 COG2352 Ppc Phosphoenolpyruvat 33.7 37 0.00081 40.5 3.4 49 284-339 558-612 (910)
219 PRK14510 putative bifunctional 33.5 2.4E+02 0.0051 35.1 10.1 62 274-335 191-276 (1221)
220 COG1060 ThiH Thiamine biosynth 33.5 62 0.0013 34.9 4.8 59 271-329 159-221 (370)
221 cd08594 PI-PLCc_eta Catalytic 33.4 1E+02 0.0022 31.6 6.0 66 264-332 24-100 (227)
222 PRK13753 dihydropteroate synth 33.2 3.9E+02 0.0085 28.0 10.3 59 258-321 13-77 (279)
223 cd06603 GH31_GANC_GANAB_alpha 33.1 1.1E+02 0.0023 32.0 6.2 59 266-328 20-85 (339)
224 PF13204 DUF4038: Protein of u 32.9 35 0.00076 34.9 2.7 62 268-329 28-110 (289)
225 smart00481 POLIIIAc DNA polyme 32.5 1.4E+02 0.0031 23.4 5.6 44 271-325 16-59 (67)
226 cd00530 PTE Phosphotriesterase 32.4 1.1E+02 0.0024 30.2 6.0 58 266-333 28-85 (293)
227 PRK09240 thiH thiamine biosynt 32.2 96 0.0021 32.9 5.9 52 273-324 163-220 (371)
228 smart00854 PGA_cap Bacterial c 32.2 1.1E+02 0.0025 29.8 6.0 56 268-330 158-213 (239)
229 cd00019 AP2Ec AP endonuclease 32.1 1.8E+02 0.0039 28.7 7.4 54 270-325 10-64 (279)
230 TIGR01235 pyruv_carbox pyruvat 31.9 1.5E+02 0.0033 36.5 8.1 68 257-325 639-707 (1143)
231 TIGR03586 PseI pseudaminic aci 31.7 1.3E+02 0.0028 32.0 6.7 72 250-325 1-95 (327)
232 cd04740 DHOD_1B_like Dihydroor 31.6 1.4E+02 0.0031 30.0 6.7 58 267-325 99-159 (296)
233 cd08593 PI-PLCc_delta Catalyti 31.6 1.1E+02 0.0025 31.6 6.1 64 264-330 24-98 (257)
234 PF08821 CGGC: CGGC domain; I 31.6 1.7E+02 0.0037 26.4 6.5 56 269-330 51-107 (107)
235 TIGR00419 tim triosephosphate 31.5 1.1E+02 0.0024 30.5 5.8 43 275-325 73-115 (205)
236 smart00729 Elp3 Elongator prot 31.5 2.2E+02 0.0049 25.2 7.3 56 268-329 134-189 (216)
237 PF04187 DUF399: Protein of un 31.5 35 0.00076 33.5 2.4 22 304-325 86-107 (213)
238 PF08874 DUF1835: Domain of un 31.4 1.1E+02 0.0024 26.8 5.3 50 270-326 71-120 (124)
239 PRK14040 oxaloacetate decarbox 31.4 1.2E+02 0.0025 34.8 6.7 51 269-329 96-146 (593)
240 cd08591 PI-PLCc_beta Catalytic 31.3 96 0.0021 32.2 5.5 66 264-330 24-100 (257)
241 PRK14566 triosephosphate isome 30.7 85 0.0018 32.5 5.0 43 275-325 87-133 (260)
242 COG0407 HemE Uroporphyrinogen- 30.7 89 0.0019 33.7 5.4 63 270-335 189-252 (352)
243 PTZ00398 phosphoenolpyruvate c 30.6 48 0.001 40.1 3.7 54 282-339 616-672 (974)
244 COG0149 TpiA Triosephosphate i 30.4 92 0.002 32.3 5.2 43 275-325 80-126 (251)
245 PRK14507 putative bifunctional 29.9 2.1E+02 0.0046 36.9 9.0 66 267-333 755-833 (1693)
246 TIGR02529 EutJ ethanolamine ut 29.9 1.4E+02 0.0031 29.6 6.3 64 253-328 24-96 (239)
247 PRK12581 oxaloacetate decarbox 29.8 1.9E+02 0.0041 32.5 7.8 70 264-350 126-196 (468)
248 PRK10426 alpha-glucosidase; Pr 29.6 2.3E+02 0.0051 32.6 8.7 88 268-367 219-317 (635)
249 PF14307 Glyco_tran_WbsX: Glyc 29.5 66 0.0014 33.6 4.1 29 266-294 54-82 (345)
250 PRK13397 3-deoxy-7-phosphohept 29.4 1.9E+02 0.0042 29.9 7.2 103 264-382 23-126 (250)
251 PRK08673 3-deoxy-7-phosphohept 29.2 1.4E+02 0.0031 31.9 6.5 58 263-325 100-162 (335)
252 cd02809 alpha_hydroxyacid_oxid 29.2 4.8E+02 0.01 26.7 10.1 130 268-407 127-287 (299)
253 PRK00009 phosphoenolpyruvate c 29.0 48 0.001 39.7 3.3 33 305-340 581-616 (911)
254 cd07381 MPP_CapA CapA and rela 29.0 1.8E+02 0.0039 28.2 6.8 57 267-330 159-215 (239)
255 PRK05799 coproporphyrinogen II 28.9 1.1E+02 0.0025 31.8 5.7 44 274-322 100-150 (374)
256 CHL00040 rbcL ribulose-1,5-bis 28.8 1.1E+02 0.0024 34.3 5.9 53 268-330 246-298 (475)
257 cd08624 PI-PLCc_beta2 Catalyti 28.6 95 0.0021 32.3 5.0 67 264-331 24-101 (261)
258 PF13380 CoA_binding_2: CoA bi 28.5 1.3E+02 0.0027 26.9 5.1 45 266-324 62-106 (116)
259 TIGR02751 PEPCase_arch phospho 28.4 1E+02 0.0022 34.9 5.5 55 305-365 224-282 (506)
260 cd06564 GH20_DspB_LnbB-like Gl 28.3 6E+02 0.013 26.3 10.7 133 265-405 12-192 (326)
261 cd03319 L-Ala-DL-Glu_epimerase 28.3 74 0.0016 32.3 4.1 57 265-337 236-293 (316)
262 PLN02561 triosephosphate isome 28.2 3.4E+02 0.0074 28.0 8.8 43 275-325 80-126 (253)
263 COG2179 Predicted hydrolase of 28.1 1.1E+02 0.0025 30.3 5.1 53 271-325 15-67 (175)
264 TIGR03326 rubisco_III ribulose 28.0 1E+02 0.0023 33.8 5.4 53 268-330 222-274 (412)
265 TIGR02026 BchE magnesium-proto 27.9 1.3E+02 0.0029 33.0 6.2 47 274-325 288-341 (497)
266 TIGR02351 thiH thiazole biosyn 27.8 92 0.002 32.9 4.8 50 273-322 162-216 (366)
267 TIGR00539 hemN_rel putative ox 27.8 1.5E+02 0.0032 31.0 6.2 48 273-325 100-155 (360)
268 PF05378 Hydant_A_N: Hydantoin 27.7 1.3E+02 0.0029 28.7 5.5 45 268-320 132-176 (176)
269 PRK00111 hypothetical protein; 27.7 95 0.0021 30.7 4.6 46 390-442 129-175 (180)
270 cd08212 RuBisCO_large_I Ribulo 27.6 1.2E+02 0.0026 33.8 5.8 52 268-330 224-275 (450)
271 cd06602 GH31_MGAM_SI_GAA This 27.4 1.5E+02 0.0032 31.1 6.2 59 266-328 20-87 (339)
272 PRK04208 rbcL ribulose bisopho 27.3 1.1E+02 0.0025 34.1 5.6 52 269-330 240-291 (468)
273 PRK14565 triosephosphate isome 27.1 1.1E+02 0.0024 31.2 5.0 43 275-325 77-123 (237)
274 PLN02429 triosephosphate isome 26.7 1.1E+02 0.0024 32.7 5.1 43 275-325 139-185 (315)
275 COG0366 AmyA Glycosidases [Car 26.7 98 0.0021 32.4 4.8 62 266-330 25-100 (505)
276 PRK13655 phosphoenolpyruvate c 26.7 1.2E+02 0.0025 34.4 5.5 56 305-366 216-275 (494)
277 PLN02540 methylenetetrahydrofo 26.6 1.4E+02 0.0031 34.2 6.3 73 270-353 153-233 (565)
278 cd08179 NADPH_BDH NADPH-depend 26.6 90 0.0019 32.8 4.5 61 270-342 39-99 (375)
279 PF05706 CDKN3: Cyclin-depende 26.5 47 0.001 32.6 2.3 48 269-324 57-104 (168)
280 COG2089 SpsE Sialic acid synth 26.5 86 0.0019 34.0 4.3 71 249-323 13-106 (347)
281 cd08631 PI-PLCc_delta4 Catalyt 26.3 1.3E+02 0.0027 31.4 5.4 64 264-330 24-98 (258)
282 cd08558 PI-PLCc_eukaryota Cata 26.2 1.3E+02 0.0027 30.8 5.2 63 264-330 24-98 (226)
283 cd08630 PI-PLCc_delta3 Catalyt 25.9 1.6E+02 0.0034 30.7 6.0 64 264-330 24-98 (258)
284 cd04735 OYE_like_4_FMN Old yel 25.9 3.5E+02 0.0075 28.5 8.6 77 206-293 181-258 (353)
285 cd06413 GH25_muramidase_1 Unch 25.8 2E+02 0.0042 27.4 6.2 51 275-332 16-66 (191)
286 cd08213 RuBisCO_large_III Ribu 25.7 1.1E+02 0.0023 33.8 4.9 48 268-325 209-256 (412)
287 PF13407 Peripla_BP_4: Peripla 25.6 1.5E+02 0.0033 27.8 5.4 105 267-404 39-150 (257)
288 TIGR00542 hxl6Piso_put hexulos 25.5 1.3E+02 0.0028 29.7 5.2 56 270-325 94-151 (279)
289 cd02810 DHOD_DHPD_FMN Dihydroo 25.5 2.3E+02 0.0049 28.3 6.9 52 268-319 109-160 (289)
290 PRK03195 hypothetical protein; 25.4 1.4E+02 0.0031 29.5 5.4 47 389-442 134-181 (186)
291 PRK07259 dihydroorotate dehydr 25.3 1.9E+02 0.0041 29.3 6.4 59 267-325 101-162 (301)
292 cd08626 PI-PLCc_beta4 Catalyti 25.2 1.7E+02 0.0036 30.5 6.0 67 263-330 23-100 (257)
293 PRK13210 putative L-xylulose 5 25.1 1.2E+02 0.0027 29.5 4.9 59 270-330 94-154 (284)
294 PF02811 PHP: PHP domain; Int 25.1 4.8E+02 0.01 23.0 11.3 44 271-325 17-60 (175)
295 PRK13347 coproporphyrinogen II 25.0 2E+02 0.0044 31.2 6.9 52 273-329 152-211 (453)
296 PRK05926 hypothetical protein; 24.9 72 0.0016 34.1 3.5 58 272-329 168-229 (370)
297 TIGR00010 hydrolase, TatD fami 24.9 2.1E+02 0.0045 27.1 6.2 46 272-330 17-62 (252)
298 cd08623 PI-PLCc_beta1 Catalyti 24.7 1.3E+02 0.0027 31.4 5.0 67 264-331 24-101 (258)
299 TIGR01211 ELP3 histone acetylt 24.7 1.1E+02 0.0024 34.5 5.0 53 273-325 206-260 (522)
300 cd08206 RuBisCO_large_I_II_III 24.7 1.3E+02 0.0028 33.2 5.3 52 269-330 212-263 (414)
301 PRK03906 mannonate dehydratase 24.3 1.3E+02 0.0028 32.7 5.3 19 307-325 83-101 (385)
302 TIGR01210 conserved hypothetic 24.2 1.3E+02 0.0028 31.2 5.1 56 273-328 117-176 (313)
303 TIGR01108 oadA oxaloacetate de 24.2 1.9E+02 0.0041 33.1 6.7 52 268-329 89-140 (582)
304 COG1099 Predicted metal-depend 24.0 45 0.00098 34.6 1.7 58 273-331 14-74 (254)
305 PTZ00333 triosephosphate isome 23.9 1.7E+02 0.0038 30.0 5.8 42 276-325 82-127 (255)
306 PRK05927 hypothetical protein; 23.9 74 0.0016 33.7 3.3 58 270-327 144-205 (350)
307 PF01136 Peptidase_U32: Peptid 23.8 78 0.0017 30.5 3.2 23 270-292 2-24 (233)
308 cd04734 OYE_like_3_FMN Old yel 23.8 4E+02 0.0086 28.0 8.6 143 207-373 179-341 (343)
309 PRK11858 aksA trans-homoaconit 23.7 4.9E+02 0.011 27.8 9.3 54 272-325 77-134 (378)
310 cd08628 PI-PLCc_gamma2 Catalyt 23.6 1.4E+02 0.0031 31.0 5.1 64 264-331 24-99 (254)
311 smart00729 Elp3 Elongator prot 23.4 1.6E+02 0.0034 26.2 4.9 54 273-327 100-157 (216)
312 cd03315 MLE_like Muconate lact 23.2 1.2E+02 0.0027 29.9 4.5 48 265-325 188-236 (265)
313 cd02876 GH18_SI-CLP Stabilin-1 23.2 1.5E+02 0.0033 30.2 5.3 52 271-325 96-152 (318)
314 PRK09856 fructoselysine 3-epim 23.2 1.2E+02 0.0027 29.5 4.5 56 270-325 90-147 (275)
315 PF07488 Glyco_hydro_67M: Glyc 23.2 1.7E+02 0.0037 31.6 5.7 60 267-331 54-116 (328)
316 PF04909 Amidohydro_2: Amidohy 23.1 1.5E+02 0.0032 28.0 4.9 52 269-325 84-135 (273)
317 cd04241 AAK_FomA-like AAK_FomA 23.1 1.3E+02 0.0028 29.6 4.6 36 299-338 15-51 (252)
318 PRK08599 coproporphyrinogen II 23.0 1.3E+02 0.0027 31.6 4.7 54 273-326 100-155 (377)
319 TIGR00695 uxuA mannonate dehyd 22.9 1.5E+02 0.0033 32.6 5.4 18 308-325 84-101 (394)
320 cd00311 TIM Triosephosphate is 22.5 1.9E+02 0.0042 29.3 5.8 47 275-325 76-122 (242)
321 cd06300 PBP1_ABC_sugar_binding 22.3 4.2E+02 0.0092 25.0 7.8 50 267-328 44-93 (272)
322 PRK13762 tRNA-modifying enzyme 22.3 2.6E+02 0.0056 29.3 6.8 60 268-335 206-265 (322)
323 KOG0471 Alpha-amylase [Carbohy 22.3 1.9E+02 0.0041 32.6 6.2 63 266-328 36-109 (545)
324 PF04476 DUF556: Protein of un 22.2 1.1E+02 0.0024 31.5 4.0 46 276-325 137-185 (235)
325 cd07062 Peptidase_S66_mccF_lik 22.1 3.1E+02 0.0067 28.4 7.3 82 269-359 17-98 (308)
326 PF04055 Radical_SAM: Radical 22.1 1.7E+02 0.0036 24.9 4.6 50 273-322 90-142 (166)
327 cd06359 PBP1_Nba_like Type I p 21.9 6.3E+02 0.014 25.1 9.2 43 270-325 173-217 (333)
328 PRK05799 coproporphyrinogen II 21.9 3.9E+02 0.0084 27.9 8.0 69 252-326 112-185 (374)
329 PF00016 RuBisCO_large: Ribulo 21.8 98 0.0021 32.8 3.7 48 268-325 93-140 (309)
330 PRK15492 triosephosphate isome 21.8 1.6E+02 0.0035 30.3 5.2 43 275-325 86-132 (260)
331 PRK14327 (dimethylallyl)adenos 21.7 1E+03 0.022 26.8 11.6 125 266-418 240-373 (509)
332 cd06338 PBP1_ABC_ligand_bindin 21.7 5.6E+02 0.012 25.3 8.8 44 271-327 184-227 (345)
333 cd00408 DHDPS-like Dihydrodipi 21.7 2.2E+02 0.0049 28.2 6.0 52 263-320 12-63 (281)
334 cd04908 ACT_Bt0572_1 N-termina 21.7 2.6E+02 0.0055 21.9 5.2 55 268-324 11-65 (66)
335 TIGR01668 YqeG_hyp_ppase HAD s 21.6 2.1E+02 0.0045 26.7 5.4 49 275-325 16-64 (170)
336 TIGR02512 Fe_only_hydrog hydro 21.6 92 0.002 33.0 3.5 85 270-398 110-197 (374)
337 TIGR03471 HpnJ hopanoid biosyn 21.5 1.8E+02 0.0039 31.5 5.7 48 273-325 287-341 (472)
338 PF09587 PGA_cap: Bacterial ca 21.4 2.9E+02 0.0064 27.2 6.7 51 270-325 171-221 (250)
339 COG1038 PycA Pyruvate carboxyl 21.4 2.5E+02 0.0054 34.3 7.0 68 258-326 645-713 (1149)
340 PF08267 Meth_synt_1: Cobalami 21.3 1.1E+02 0.0024 32.3 3.9 35 273-321 42-76 (310)
341 cd07492 Peptidases_S8_8 Peptid 21.3 6E+02 0.013 24.1 8.6 60 266-338 74-133 (222)
342 cd07025 Peptidase_S66 LD-Carbo 21.2 3.2E+02 0.0069 27.9 7.1 92 259-359 3-94 (282)
343 TIGR03128 RuMP_HxlA 3-hexulose 21.2 2.1E+02 0.0046 27.0 5.5 43 275-328 68-110 (206)
344 TIGR00676 fadh2 5,10-methylene 21.2 81 0.0018 32.0 2.9 72 272-354 143-222 (272)
345 cd06340 PBP1_ABC_ligand_bindin 21.2 5.6E+02 0.012 25.8 8.8 45 271-328 187-231 (347)
346 PF03447 NAD_binding_3: Homose 21.1 87 0.0019 27.0 2.7 48 268-324 68-115 (117)
347 PF11193 DUF2812: Protein of u 21.0 3.8E+02 0.0082 23.3 6.6 57 268-324 2-68 (115)
348 cd08572 GDPD_GDE5_like Glycero 20.9 2.7E+02 0.0059 28.5 6.6 44 270-325 223-266 (293)
349 PRK05904 coproporphyrinogen II 20.8 1.9E+02 0.004 30.6 5.5 57 273-329 103-162 (353)
350 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.8 3.3E+02 0.0071 27.7 7.1 68 267-350 115-182 (275)
351 cd08560 GDPD_EcGlpQ_like_1 Gly 20.8 1.2E+02 0.0026 32.4 4.2 50 272-325 247-296 (356)
352 PRK14581 hmsF outer membrane N 20.7 1E+02 0.0022 36.0 3.8 58 267-325 69-137 (672)
353 cd08209 RLP_DK-MTP-1-P-enolase 20.7 1.4E+02 0.0031 32.6 4.7 27 268-294 202-228 (391)
354 PRK06052 5-methyltetrahydropte 20.7 2.6E+02 0.0056 30.4 6.5 84 241-330 105-206 (344)
355 PF14542 Acetyltransf_CG: GCN5 20.6 59 0.0013 27.2 1.5 17 309-325 44-60 (78)
356 TIGR00423 radical SAM domain p 20.6 2.8E+02 0.0061 28.4 6.6 52 267-325 36-87 (309)
357 PF00682 HMGL-like: HMGL-like 20.5 2.6E+02 0.0057 27.0 6.1 65 269-351 107-171 (237)
358 PF12017 Tnp_P_element: Transp 20.5 74 0.0016 32.5 2.4 26 303-328 192-217 (236)
359 COG1609 PurR Transcriptional r 20.5 3.1E+02 0.0067 28.3 6.9 104 268-405 99-204 (333)
360 PLN03030 cationic peroxidase; 20.4 77 0.0017 33.9 2.6 46 374-425 262-317 (324)
361 TIGR00539 hemN_rel putative ox 20.4 3.7E+02 0.008 28.1 7.5 71 252-328 113-188 (360)
362 TIGR00089 RNA modification enz 20.3 8E+02 0.017 26.3 10.1 111 266-402 167-287 (429)
363 TIGR00222 panB 3-methyl-2-oxob 20.3 2.9E+02 0.0063 28.8 6.6 53 254-325 82-134 (263)
364 cd07941 DRE_TIM_LeuA3 Desulfob 20.3 2.1E+02 0.0046 28.9 5.6 52 274-325 82-137 (273)
365 PRK09432 metF 5,10-methylenete 20.1 1E+02 0.0022 32.0 3.3 64 272-354 162-241 (296)
No 1
>PLN02705 beta-amylase
Probab=100.00 E-value=6e-202 Score=1587.18 Aligned_cols=492 Identities=80% Similarity=1.290 Sum_probs=479.1
Q ss_pred CCCCCCCCCCcchhhhhHHHHHHhhcCC----CCCCCCCCCCCCCccchhHHHHhHHHHHhhhhHHHHHHHhhhhcCCCC
Q 009335 27 TQSHSRRPRGFAATAAAAAAAAAANNNS----NSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFP 102 (537)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~ 102 (537)
+|||+|||||||+||||+++|+..++++ .++|++||+|+|+|+|++||||||+|||||||||+|||+|||+||||+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~rer~rrai~~ki~aglr~~g~~~ 113 (681)
T PLN02705 34 NQPQSRRPRGFAATAAAAAIAPTENDVNNGNISSGGGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFP 113 (681)
T ss_pred CCCccCCCcchhhhhcccccCCCcccccCccccCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4589999999999999999888766655 456677777888999999999999999999999999999999999999
Q ss_pred CCcccChhHHHHHHHHHhCceEcCCCCceeccccccCccchhhhhhhhhhccccccccccccCccc---ccccccccccc
Q 009335 103 LPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS---VKNCSVKASVE 179 (537)
Q Consensus 103 lp~~~d~n~vl~al~~~ag~~v~~dg~~y~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 179 (537)
||+|||+||||||||+||||+||+|||||| . .++|+++|+|+|+|||||++ |++|+.+...+
T Consensus 114 lp~~~d~n~vl~al~~eagw~v~~dg~~yr-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (681)
T PLN02705 114 LPARADMNDVLAALAREAGWTVEADGTTYR-----------Q----SPQPSHVGSFPVRSVESPLSSSTLKNCAKAAIES 178 (681)
T ss_pred CCcccchHHHHHHHHHhcCcEEcCCCCccc-----------C----CCCCcccccccccCccCcchhhhHHHhhhhhhcc
Confidence 999999999999999999999999999999 4 67789999999999999997 99999999999
Q ss_pred cCCcccccccCCCCCCcccccccccC-CCCCCCcCCCCCcccchhhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeece
Q 009335 180 CQPSVLRIDESLSPASFDSVVIPERD-SRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANH 258 (537)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLd 258 (537)
||+|+|||||||||+|||||||+|++ +++++|+ +++|| +|++|++++|+|++++++.++.+++.+++||||||||||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd 256 (681)
T PLN02705 179 QQHSVLRIDESLSPVSLDSVVIAESDHPGNGRYT-STSPI-TSVGCLEADQLIQDVHSGEHENDFTETFYVPVYVMLAVG 256 (681)
T ss_pred cccchhccccccCcccccceeeeccccccccccc-ccCcc-ccccccchhhhhhccCCCCCccCcCCCCceeEEEEeecc
Confidence 99999999999999999999999999 8999999 99999 999999999999999999999999999999999999999
Q ss_pred eecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 009335 259 VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 259 ~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGD 338 (537)
+|+.+|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+||+++|||||||||||||||||||
T Consensus 257 ~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD 336 (681)
T PLN02705 257 IINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASG 336 (681)
T ss_pred eeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhccceeEEEecc
Q 009335 339 DAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGL 418 (537)
Q Consensus 339 t~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGL 418 (537)
+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+||+++|++||++++|+||+|||
T Consensus 337 ~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGL 416 (681)
T PLN02705 337 NVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGL 416 (681)
T ss_pred cccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCcccCCCcccccccHHHHHHHHHHHHHhCCcCcCCCCCCCCCCCCCCCCCcccccCCccccccch
Q 009335 419 GPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGR 498 (537)
Q Consensus 419 GPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~fr~aAk~kGn~~WG~gP~nAg~YNs~P~~t~FF~~gG~w~S~YGk 498 (537)
||||||||||||+..||+||||||||||||||+++|+++|+++||++||+||||||+||++|++|+||+++|+|+|+|||
T Consensus 417 GP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~Lk~aA~a~GhpeWG~gP~dAg~YN~~P~~tgFF~~~G~w~S~YGk 496 (681)
T PLN02705 417 GASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQNLRKAAKSRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYYGR 496 (681)
T ss_pred CCCccccCCCCcccCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCCCCccccCCCCCCCCCCCCCCCcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q 009335 499 FFLNWYAQTLIDHADNVLSLASLAFEETKIIVKVCME 535 (537)
Q Consensus 499 FFLsWYS~~Li~HGdrVL~~A~~~F~g~~l~aKV~G~ 535 (537)
|||+|||++||+||||||++|+.+|++++|++|||||
T Consensus 497 FFLsWYS~~Ll~HGDrVLs~A~~vF~~~~LsaKVaGI 533 (681)
T PLN02705 497 FFLHWYSQLLIDHADNVLSLANLAFEETKIIVKIPAV 533 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 9999999999999999999999999999999999998
No 2
>PLN02905 beta-amylase
Probab=100.00 E-value=5.4e-181 Score=1430.33 Aligned_cols=470 Identities=56% Similarity=0.991 Sum_probs=446.1
Q ss_pred CCCCCCCCCCCCCccchhHHHHhHHHHHhhhhHHHHHHHhhhhcCCCCCCcccChhHHHHHHHHHhCceEcCCCCceecc
Q 009335 55 NSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRLS 134 (537)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~vl~al~~~ag~~v~~dg~~y~~~ 134 (537)
+++|+++||+.++..-.|||||||+|||||||||+|||+|||+||||+||+|||+||||||||+||||+||+||||||+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~v~~~l~~eag~~v~~dg~~y~~~ 147 (702)
T PLN02905 68 EQVGTPGGGGSRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSR 147 (702)
T ss_pred HhcCCCCCCccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccchHHHHHHHHHhcCcEEcCCCCccccc
Confidence 78999988876544444799999999999999999999999999999999999999999999999999999999999964
Q ss_pred ccccCccchhhhhhhhhhccccccccccccCccc--------------ccccccccccccCCcccccccCCCCCCccccc
Q 009335 135 NQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS--------------VKNCSVKASVECQPSVLRIDESLSPASFDSVV 200 (537)
Q Consensus 135 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (537)
.++.- +.-..++.+...++|+++|+|||++ +++|+.++++-+|+|+ +|+||+|+|+||||
T Consensus 148 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~d~~~~~~~~~~~~ 221 (702)
T PLN02905 148 SQGTR----PAGGTSAVAATSSSSHLVSQQTPPPSLRGVSSGYRSSVEYNACRMKGVFVPASSP--YDVSPSQSSELVVV 221 (702)
T ss_pred CCCCC----CCCCcccccccccccccccccCCcchhcccccccccccccchhhhccccccCCCc--cccccCCCCcceeE
Confidence 33221 1111133345568999999999984 9999999999999999 79999999999999
Q ss_pred ccccCCCCCCCcCCCCCcccchhhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHH
Q 009335 201 IPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMK 280 (537)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK 280 (537)
++|++++|++| ++|.+|++|++++|++ |+++..++.+++.+++||||||||||+|+.+|+|+++++|+++|++||
T Consensus 222 ~~~~~~~~~~~----~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK 296 (702)
T PLN02905 222 MGDRGSQNENH----GLIGGSVDAINSKQIL-DIPPKLTERDFAGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILK 296 (702)
T ss_pred eeccccccccc----CCccCcccccchhhhh-hhhcccccccccCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHH
Confidence 99999999999 4777999999999888 999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhHHhhhccCCCeEe
Q 009335 281 ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFF 360 (537)
Q Consensus 281 ~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~e~g~~~PDI~y 360 (537)
++||||||||||||+||+++|++|||++|++||+||+++|||||||||||||||||||+|+||||+||++++++||||||
T Consensus 297 ~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDiff 376 (702)
T PLN02905 297 SINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFF 376 (702)
T ss_pred HcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhccceeEEEeccCCCccccCCCCCCCCCcccCCC
Q 009335 361 TDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440 (537)
Q Consensus 361 tDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGLGPaGELRYPSYp~~~GW~~PGi 440 (537)
|||+|+||+||||||+|++|||+||||+|+|+|||+||+++|++||+++||+||+|||||||||||||||+..||+||||
T Consensus 377 tDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaGELRYPSYp~s~GW~fPGi 456 (702)
T PLN02905 377 TDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCGELRYPSCPVKHGWRYPGI 456 (702)
T ss_pred ecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCccccCCCCcCcCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHhCCcCcCCCCCCCCCCCCCCCCCcccccCCccccccchhhHHHhHHHHHHHHHHHHHHHH
Q 009335 441 GEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLAS 520 (537)
Q Consensus 441 GEFQCYDky~~a~fr~aAk~kGn~~WG~gP~nAg~YNs~P~~t~FF~~gG~w~S~YGkFFLsWYS~~Li~HGdrVL~~A~ 520 (537)
||||||||||+++|+++|+++||++||+||||||+||++|++|+||+++|+|+|+||||||+|||++||+||||||++|+
T Consensus 457 GEFQCYDKymla~Lk~aA~a~GhpeWG~gP~dAG~YN~~P~~TgFF~~~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~ 536 (702)
T PLN02905 457 GEFQCYDQYLLKSLRKAAEARGHLFWARGPDNTGSYNSQPHETGFFCDGGDYDGYYGRFFLNWYSQVLVDHGDRVLSLAK 536 (702)
T ss_pred ceeeeccHHHHHHHHHHHHHhCcHhhccCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceEEEeccc
Q 009335 521 LAFEETKIIVKVCME 535 (537)
Q Consensus 521 ~~F~g~~l~aKV~G~ 535 (537)
.+|++++|++|||||
T Consensus 537 ~vF~g~~LaaKVaGI 551 (702)
T PLN02905 537 LAFEGTCIAAKLPGV 551 (702)
T ss_pred HhcCCCeEEEEeccc
Confidence 999999999999998
No 3
>PLN02803 beta-amylase
Probab=100.00 E-value=1.2e-128 Score=1018.34 Aligned_cols=291 Identities=45% Similarity=0.890 Sum_probs=285.6
Q ss_pred CCCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcE
Q 009335 244 TGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (537)
Q Consensus 244 ~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv 323 (537)
...++||||||||||+|+.+|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||
T Consensus 81 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 81 KNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred ccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHh
Q 009335 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFD 403 (537)
Q Consensus 324 ~vvmSFHqCGGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa 403 (537)
|+|||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||+|+|+|||+|||++|+
T Consensus 161 q~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 240 (548)
T PLN02803 161 QVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK 240 (548)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccceeEEEeccCCCccccCCCCCCCCC-cccCCCcccccccHHHHHHHHHHHHHhCCcCcCC-CCCCCCCCCCCCC
Q 009335 404 DLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWAR-GPDNAGQYNSLPH 481 (537)
Q Consensus 404 ~~l~~~vI~eI~VGLGPaGELRYPSYp~~~G-W~~PGiGEFQCYDky~~a~fr~aAk~kGn~~WG~-gP~nAg~YNs~P~ 481 (537)
+|++ +||+||+|||||||||||||||+..| |+||||||||||||||+++|+++|++.||++||+ ||||||+||++|+
T Consensus 241 ~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~ 319 (548)
T PLN02803 241 DYLG-GVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPE 319 (548)
T ss_pred HHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCC
Confidence 9997 79999999999999999999999888 9999999999999999999999999999999996 7999999999999
Q ss_pred CCcccccCCccccccchhhHHHhHHHHHHHHHHHHHHHHhhcCCC--ceEEEeccc
Q 009335 482 ETGFFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEET--KIIVKVCME 535 (537)
Q Consensus 482 ~t~FF~~gG~w~S~YGkFFLsWYS~~Li~HGdrVL~~A~~~F~g~--~l~aKV~G~ 535 (537)
+|+||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||
T Consensus 320 ~t~FF~~~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GI 375 (548)
T PLN02803 320 ETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGI 375 (548)
T ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEecee
Confidence 999999989999999999999999999999999999999999865 899999998
No 4
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=1.4e-128 Score=1020.52 Aligned_cols=296 Identities=42% Similarity=0.822 Sum_probs=287.1
Q ss_pred CCCCCCCCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHH
Q 009335 239 HEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIRE 318 (537)
Q Consensus 239 ~~~~~~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~ 318 (537)
....-...++||||||||||+|+.+|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||+
T Consensus 96 ~~~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~ 175 (573)
T PLN00197 96 IGGTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKR 175 (573)
T ss_pred cccccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHH
Confidence 33444556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEeeeccCCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHH
Q 009335 319 FNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSF 398 (537)
Q Consensus 319 ~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSF 398 (537)
+|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+||
T Consensus 176 ~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SF 255 (573)
T PLN00197 176 HGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAF 255 (573)
T ss_pred cCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccceeEEEeccCCCccccCCCCCCCCC-cccCCCcccccccHHHHHHHHHHHHHhCCcCcCC-CCCCCCCC
Q 009335 399 RTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWAR-GPDNAGQY 476 (537)
Q Consensus 399 r~~Fa~~l~~~vI~eI~VGLGPaGELRYPSYp~~~G-W~~PGiGEFQCYDky~~a~fr~aAk~kGn~~WG~-gP~nAg~Y 476 (537)
|++|++||+ ++|+||+|||||||||||||||+..| |+||||||||||||||+++|+++|++.||++||+ ||||||+|
T Consensus 256 r~~F~~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Y 334 (573)
T PLN00197 256 RDNFKHLLG-DTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHY 334 (573)
T ss_pred HHHHHHHhc-CceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCcccc
Confidence 999999998 59999999999999999999999888 9999999999999999999999999999999995 89999999
Q ss_pred CCCCCCCcccc-cCCccccccchhhHHHhHHHHHHHHHHHHHHHHhhcCC--CceEEEeccc
Q 009335 477 NSLPHETGFFC-ERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEE--TKIIVKVCME 535 (537)
Q Consensus 477 Ns~P~~t~FF~-~gG~w~S~YGkFFLsWYS~~Li~HGdrVL~~A~~~F~g--~~l~aKV~G~ 535 (537)
|+.|++|+||+ ++|+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||
T Consensus 335 n~~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGI 396 (573)
T PLN00197 335 NNWPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGI 396 (573)
T ss_pred CCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccc
Confidence 99999999999 57899999999999999999999999999999999985 6899999998
No 5
>PLN02801 beta-amylase
Probab=100.00 E-value=2.7e-128 Score=1011.75 Aligned_cols=290 Identities=46% Similarity=0.916 Sum_probs=285.6
Q ss_pred CCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 245 GTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 245 ~~~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
..++||||||||||+|+.+|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++|||||
T Consensus 12 ~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 12 LANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred cCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhh
Q 009335 325 VVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (537)
Q Consensus 325 vvmSFHqCGGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~ 404 (537)
||||||||||||||+|+||||+||+++++++||||||||+|+||+||||||||++|||+||||+|+|+|||+|||++|++
T Consensus 92 ~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~ 171 (517)
T PLN02801 92 AIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD 171 (517)
T ss_pred EEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeEEEeccCCCccccCCCCCCCCCcccCCCcccccccHHHHHHHHHHHHHhCCcCcCCCCCCCCCCCCCCCCCc
Q 009335 405 LFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETG 484 (537)
Q Consensus 405 ~l~~~vI~eI~VGLGPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~fr~aAk~kGn~~WG~gP~nAg~YNs~P~~t~ 484 (537)
|+++++|+||+|||||||||||||||+..||+||||||||||||||+++||++|+++||++||. |||||+||++|++|+
T Consensus 172 ~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~-P~dag~Yn~~P~~t~ 250 (517)
T PLN02801 172 FLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL-PDDAGEYNDTPEDTG 250 (517)
T ss_pred hccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC-CCCCCcccCCCCCCC
Confidence 9998899999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred ccccCCccccccchhhHHHhHHHHHHHHHHHHHHHHhhcCCC--ceEEEeccc
Q 009335 485 FFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEET--KIIVKVCME 535 (537)
Q Consensus 485 FF~~gG~w~S~YGkFFLsWYS~~Li~HGdrVL~~A~~~F~g~--~l~aKV~G~ 535 (537)
||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||
T Consensus 251 FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGI 303 (517)
T PLN02801 251 FFKSNGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGI 303 (517)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecee
Confidence 999999999999999999999999999999999999999875 899999998
No 6
>PLN02161 beta-amylase
Probab=100.00 E-value=1.4e-125 Score=991.40 Aligned_cols=294 Identities=38% Similarity=0.736 Sum_probs=283.7
Q ss_pred CCCCCCCCccEEEEeeceeecCCC----cccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHH
Q 009335 241 DDFTGTPYIPVYVMLANHVINNFC----QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNII 316 (537)
Q Consensus 241 ~~~~~~~~vpVyVMLPLd~V~~~~----~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mv 316 (537)
......++||||||||||+|+.++ +|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+||
T Consensus 84 ~~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mv 163 (531)
T PLN02161 84 LVSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLI 163 (531)
T ss_pred cccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHH
Confidence 334456899999999999999664 7999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEEeeeccCCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHH
Q 009335 317 REFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMR 396 (537)
Q Consensus 317 r~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMr 396 (537)
|++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+
T Consensus 164 r~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~ 243 (531)
T PLN02161 164 SEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFML 243 (531)
T ss_pred HHcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccceeEEEeccCCCccccCCCCCCCCC-cccCCCcccccccHHHHHHHHHHHHHhCCcCcCC-CCCCCC
Q 009335 397 SFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWAR-GPDNAG 474 (537)
Q Consensus 397 SFr~~Fa~~l~~~vI~eI~VGLGPaGELRYPSYp~~~G-W~~PGiGEFQCYDky~~a~fr~aAk~kGn~~WG~-gP~nAg 474 (537)
||+++|++|++ +||+||+|||||||||||||||+..| |+||||||||||||||+++|+++|+++||++||+ +|||||
T Consensus 244 SFr~~F~~~~~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg 322 (531)
T PLN02161 244 SFSTKFEPYIG-NVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTG 322 (531)
T ss_pred HHHHHHHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCc
Confidence 99999999997 69999999999999999999999877 9999999999999999999999999999999995 799999
Q ss_pred CCCCCCCCCccccc-CCccccccchhhHHHhHHHHHHHHHHHHHHHHhhcCC--------CceEEEeccc
Q 009335 475 QYNSLPHETGFFCE-RGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEE--------TKIIVKVCME 535 (537)
Q Consensus 475 ~YNs~P~~t~FF~~-gG~w~S~YGkFFLsWYS~~Li~HGdrVL~~A~~~F~g--------~~l~aKV~G~ 535 (537)
.||+.|++|+||++ +|+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||
T Consensus 323 ~Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GI 392 (531)
T PLN02161 323 CYNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGI 392 (531)
T ss_pred ccCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccc
Confidence 99999999999996 5789999999999999999999999999999999963 7899999998
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=4.8e-114 Score=888.38 Aligned_cols=270 Identities=53% Similarity=0.999 Sum_probs=234.0
Q ss_pred EEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeec
Q 009335 252 YVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (537)
Q Consensus 252 yVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHq 331 (537)
|||||||+|+++++++ +|+++|++||++||+|||||||||+||+++|++|||++|++|++|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988775 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhccce
Q 009335 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLI 411 (537)
Q Consensus 332 CGGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI 411 (537)
|||||||+|+||||.||+++++++ ||+||||+|+||+|||| ||++||| +|+|+|||+||+++|++|+ ++|
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~--~~I 147 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL--STI 147 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH--TGE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 699
Q ss_pred eEEEeccCCCccccCCCCCCCCCcccCCCcccccccHHHHHHHHHHHHHhC------CcCcCC-CCCCCCCCCCCCCCCc
Q 009335 412 CAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRG------HSFWAR-GPDNAGQYNSLPHETG 484 (537)
Q Consensus 412 ~eI~VGLGPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~fr~aAk~kG------n~~WG~-gP~nAg~YNs~P~~t~ 484 (537)
+||+|||||||||||||||..+||+||||||||||||||+++||++|+.|| |++||+ +|+++ ||++|++|+
T Consensus 148 ~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 148 TEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred eEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999544 899995 79988 999999999
Q ss_pred ccccCCccccccchhhHHHhHHHHHHHHHHHHHHHHhhcCCC---ceEEEecccc
Q 009335 485 FFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEET---KIIVKVCMEL 536 (537)
Q Consensus 485 FF~~gG~w~S~YGkFFLsWYS~~Li~HGdrVL~~A~~~F~g~---~l~aKV~G~~ 536 (537)
||+++|+|+|+||||||+|||++|++||||||++|+.+|+++ +|++|||||-
T Consensus 226 fF~~~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIH 280 (402)
T PF01373_consen 226 FFRDNGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIH 280 (402)
T ss_dssp TTSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---
T ss_pred CcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccee
Confidence 999999999999999999999999999999999999999987 8999999983
No 8
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=100.00 E-value=5.4e-42 Score=313.70 Aligned_cols=130 Identities=38% Similarity=0.545 Sum_probs=115.1
Q ss_pred CCCCCCccchhHHHHhHHHHHhhhhHHHHHHHhhhhcCCCCCCcccChhHHHHHHHHHhCceEcCCCCceeccccccCcc
Q 009335 62 SSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHH 141 (537)
Q Consensus 62 ~~~~~~~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~vl~al~~~ag~~v~~dg~~y~~~~~~~~~~ 141 (537)
++++.++|| ||||||+|||||||||+|||+|||+||||+||+|||+||||||||+||||+||+|||||| ++.+
T Consensus 2 ~~~r~pt~k--ErEnnk~RERrRRAIaakIfaGLR~~Gny~Lp~~aD~NeVLkALc~eAGw~Ve~DGTtyr-----~~~~ 74 (150)
T PF05687_consen 2 SGGRRPTWK--ERENNKRRERRRRAIAAKIFAGLRAHGNYKLPKHADNNEVLKALCREAGWTVEPDGTTYR-----KGCK 74 (150)
T ss_pred CCcccccHh--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHhCCEEEccCCCeec-----cCCC
Confidence 456666666 999999999999999999999999999999999999999999999999999999999999 3333
Q ss_pred chhhhhhhhhhccccccccccccCccc--ccccccccccccCCcccccccCCCCCCccccccccc
Q 009335 142 HLHQQMAAAAATTTAAFPVRSVESPLS--VKNCSVKASVECQPSVLRIDESLSPASFDSVVIPER 204 (537)
Q Consensus 142 ~~~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (537)
++ ......|.+...+.+|+.. +.+|+...++.++.+.++.+...||.++|++++++.
T Consensus 75 ~~------~~~~~~g~s~~~sp~ss~~~~~~ss~~~sp~~s~~~s~~ss~~pSp~~~d~~~~~~~ 133 (150)
T PF05687_consen 75 PP------EPMEIVGSSASASPCSSYQLSPNSSAFPSPVPSYQPSPSSSSFPSPSSLDSINNSSS 133 (150)
T ss_pred CC------ccccccccCCCCCCcCCCcCCccccCcCCcccccCCCcCCCCCCCCccccccccccc
Confidence 33 3345677777888888764 889999999999999999999999999999999776
No 9
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.90 E-value=1.1e-23 Score=212.75 Aligned_cols=212 Identities=16% Similarity=0.310 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccCh
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ 346 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~ 346 (537)
+++.|+++|+.||++|++.|+|.++ |..+|| .+|+|||+.+++++++++++||||++ + +++...|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~viL--~----------~~~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKVIL--G----------TPTAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EEEE--E----------ECTTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeEEE--E----------eccccccc
Confidence 4589999999999999999999765 999999 89999999999999999999999876 5 44567999
Q ss_pred hHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcc----hHHHHHHHHHHHHHHhhhhhccceeEEEeccCCCc
Q 009335 347 WVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTG----IEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSG 422 (537)
Q Consensus 347 WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTp----ie~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGLGPaG 422 (537)
||. +++||++.+|.+|.+.. ++.|.. .+.|+++++.|.+++++
T Consensus 75 Wl~---~~~Pe~~~~~~~g~~~~------------~g~~~~~~~~~p~yr~~~~~~~~~l~~------------------ 121 (374)
T PF02449_consen 75 WLY---DKYPEILPVDADGRRRG------------FGSRQHYCPNSPAYREYARRFIRALAE------------------ 121 (374)
T ss_dssp HHH---CCSGCCC-B-TTTSBEE------------CCCSTT-HCCHHHHHHHHHHHHHHHHH------------------
T ss_pred chh---hhcccccccCCCCCcCc------------cCCccccchhHHHHHHHHHHHHHHHHh------------------
Confidence 998 78999999999998855 444433 78999999999999988
Q ss_pred cccCCCCCCCCCccc---CCCcccccccHHHHHHHHHHHHHhC------CcCcCCCC--CCCCCCCC--CCCCCcccccC
Q 009335 423 ELKYPSLSERMGWRY---PGIGEFQCYDRYLQQSLRKAAKLRG------HSFWARGP--DNAGQYNS--LPHETGFFCER 489 (537)
Q Consensus 423 ELRYPSYp~~~GW~~---PGiGEFQCYDky~~a~fr~aAk~kG------n~~WG~gP--~nAg~YNs--~P~~t~FF~~g 489 (537)
||..+|...||++ ||.+ .|||+.|++.|++|+++|| |.+||+.- +....+.+ +|..+....+
T Consensus 122 --~y~~~p~vi~~~i~NE~~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~- 196 (374)
T PF02449_consen 122 --RYGDHPAVIGWQIDNEPGYH--RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPEN- 196 (374)
T ss_dssp --HHTTTTTEEEEEECCSTTCT--S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS----
T ss_pred --hccccceEEEEEeccccCcC--cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCC-
Confidence 8999999999988 6644 7999999999999999998 88999753 22233333 4544442211
Q ss_pred CccccccchhhHHHhHHHHHHHHHHHHHHHHhhcCCCceEEEecc
Q 009335 490 GDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEETKIIVKVCM 534 (537)
Q Consensus 490 G~w~S~YGkFFLsWYS~~Li~HGdrVL~~A~~~F~g~~l~aKV~G 534 (537)
.....+|...-+..+.++-..+..+.+++-++.+|..+.-|
T Consensus 197 ----~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~ 237 (374)
T PF02449_consen 197 ----PAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMG 237 (374)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-T
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccc
Confidence 12233455556778888888888888888778888877655
No 10
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=9.9e-18 Score=183.95 Aligned_cols=206 Identities=19% Similarity=0.344 Sum_probs=161.5
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHH-HHHHHHcCCcEEEEEeeeccCCCCCCC-cccc
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYREL-FNIIREFNLKVQVVMAFHEYGANDSGD-AWIS 343 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L-~~mvr~~GLKv~vvmSFHqCGGNVGDt-~~Ip 343 (537)
-+++.|+.+|++||++|++.|++..+ |+.+|| .+|+|||++.|+. ++|+++.||++++ + + ++..
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~vil--~----------t~P~g~ 93 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYVIL--R----------TGPTGA 93 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceEEE--e----------cCCCCC
Confidence 35699999999999999999999555 999999 7999999999999 9999999999988 5 4 6788
Q ss_pred cChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcc----hHHHHHHHHHHHHHHhhhhhccceeEEEeccC
Q 009335 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTG----IEVYFDFMRSFRTEFDDLFVAGLICAVEIGLG 419 (537)
Q Consensus 344 LP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTp----ie~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGLG 419 (537)
.|.|+. +++|+|+.+|.+|.+.. +++|.+ .+.|+.+.+.+.+++++
T Consensus 94 ~P~Wl~---~~~PeiL~~~~~~~~~~------------~g~r~~~~~~~~~Yr~~~~~i~~~ire--------------- 143 (673)
T COG1874 94 PPAWLA---KKYPEILAVDENGRVRS------------DGARENICPVSPVYREYLDRILQQIRE--------------- 143 (673)
T ss_pred CchHHh---cCChhheEecCCCcccC------------CCcccccccccHHHHHHHHHHHHHHHH---------------
Confidence 999999 89999999999999866 888976 56799999998888888
Q ss_pred CCcccc-CCCCCCCCCccc---CCCcccccccHHHHHHHHHHHHHhC------CcCcCCC--CCCCCCCCCCCCCCcccc
Q 009335 420 PSGELK-YPSLSERMGWRY---PGIGEFQCYDRYLQQSLRKAAKLRG------HSFWARG--PDNAGQYNSLPHETGFFC 487 (537)
Q Consensus 420 PaGELR-YPSYp~~~GW~~---PGiGEFQCYDky~~a~fr~aAk~kG------n~~WG~g--P~nAg~YNs~P~~t~FF~ 487 (537)
| |..++...+|+. +| |. -|||++|++.|+.|++++| |..|++. -|+...|..-+....|=.
T Consensus 144 -----r~~~~~~~v~~w~~dneY~-~~-~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e 216 (673)
T COG1874 144 -----RLYGNGPAVITWQNDNEYG-GH-PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGE 216 (673)
T ss_pred -----HHhccCCceeEEEccCccC-Cc-cccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccc
Confidence 6 999999999998 55 31 3999999999999999998 8899853 344444433222111111
Q ss_pred cC--CccccccchhhHHHhHHHHHHHHHHHHHHHHhhcCCCc
Q 009335 488 ER--GDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEETK 527 (537)
Q Consensus 488 ~g--G~w~S~YGkFFLsWYS~~Li~HGdrVL~~A~~~F~g~~ 527 (537)
+. +.+ ..|=+|+ +.+.+.--++....++..|++.+
T Consensus 217 ~~~~~~~-ld~~~f~----~e~~~~~~~~~~~~~~~~~P~~p 253 (673)
T COG1874 217 LPLPGLY-LDYRRFE----SEQILEFVREEGEAIKAYFPNRP 253 (673)
T ss_pred cCCccch-hhHhhhh----hhhhHHHHHHHHHHHHHhCCCCC
Confidence 11 111 2333333 34477778888888888896544
No 11
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.87 E-value=9e-09 Score=104.61 Aligned_cols=116 Identities=22% Similarity=0.350 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchH---HHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccccc
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG---YRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSg---Y~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpL 344 (537)
.++.|..-|++||++|+|.|.+-|.|...|+ .||+|||++ .+.++++++++||+|++=..=-.|+ ....--+
T Consensus 22 p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~a----E~~~gG~ 96 (319)
T PF01301_consen 22 PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICA----EWDNGGL 96 (319)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---T----TBGGGG-
T ss_pred ChhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEEEecccceecc----cccchhh
Confidence 5899999999999999999999999999999 799999997 6799999999999987744433444 2233459
Q ss_pred ChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcc----hHHHHHHHHHHHHHHhhhhh--ccceeEEEe
Q 009335 345 PQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTG----IEVYFDFMRSFRTEFDDLFV--AGLICAVEI 416 (537)
Q Consensus 345 P~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTp----ie~Y~DFMrSFr~~Fa~~l~--~~vI~eI~V 416 (537)
|.||.+ ++++.+ ||. ++..+.|++.+...+++++- .|.|.-|||
T Consensus 97 P~Wl~~----~~~~~~------------------------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv 146 (319)
T PF01301_consen 97 PAWLLR----KPDIRL------------------------RTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQV 146 (319)
T ss_dssp -GGGGG----STTS-S------------------------SSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE
T ss_pred hhhhhc----cccccc------------------------cccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhh
Confidence 999983 333321 333 44445555556666666542 367777877
No 12
>PLN03059 beta-galactosidase; Provisional
Probab=98.43 E-value=2.8e-06 Score=96.57 Aligned_cols=147 Identities=19% Similarity=0.252 Sum_probs=106.6
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCCcccc
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYR---ELFNIIREFNLKVQVVMAFHEYGANDSGDAWIS 343 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~---~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~Ip 343 (537)
..++.|+.-|++||++|+|.|.+-|+|..-|+ .||+|||++-. +.++++++.||.|++=..=.-|+- --..-
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAE----w~~GG 130 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAE----WNFGG 130 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeee----ecCCC
Confidence 47899999999999999999999999999999 79999999865 457899999999998555444431 11234
Q ss_pred cChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhh--------ccceeEEE
Q 009335 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV--------AGLICAVE 415 (537)
Q Consensus 344 LP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~--------~~vI~eI~ 415 (537)
||.|+. +.|+|-+ ||.-+.|.+.|+.|-+++.+.+. .|-|.-+|
T Consensus 131 lP~WL~----~~~~i~~------------------------Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 131 FPVWLK----YVPGIEF------------------------RTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred Cchhhh----cCCCccc------------------------ccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 999997 3455432 45567788888888887777663 35566666
Q ss_pred eccCCCccccCCCCCCCCCcccCCCcccccccHHHHHHHHHHHHHhC
Q 009335 416 IGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRG 462 (537)
Q Consensus 416 VGLGPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~fr~aAk~kG 462 (537)
| |=-|.||... +| --|+.-++.+++.|++.|
T Consensus 183 I------ENEYGs~~~~-----~~-----~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 183 I------ENEYGPVEWE-----IG-----APGKAYTKWAADMAVKLG 213 (840)
T ss_pred e------cccccceecc-----cC-----cchHHHHHHHHHHHHHcC
Confidence 6 4457776432 12 124555567777888877
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=98.12 E-value=1e-05 Score=85.40 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=88.8
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~I 342 (537)
......+++||+.||++|++.+++.+-|..+||.+++++| +..|+++++.++++||++++.|. | .
T Consensus 50 ~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H-----------f 117 (427)
T TIGR03356 50 CDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H-----------W 117 (427)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------C
Confidence 4567899999999999999999999999999998778888 79999999999999999999765 3 4
Q ss_pred ccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEEe
Q 009335 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (537)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~V 416 (537)
.+|.|+.+ +.|-.+ |..++.|.+|.+...++|.+..+- -||.|..+
T Consensus 118 d~P~~l~~------------~gGw~~----------------~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 118 DLPQALED------------RGGWLN----------------RDTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CccHHHHh------------cCCCCC----------------hHHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 58999863 123332 344788999999999999874321 25556654
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.92 E-value=4e-05 Score=81.16 Aligned_cols=101 Identities=20% Similarity=0.303 Sum_probs=79.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC-CCccc---chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~-p~~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~ 341 (537)
......+++||+.||++|++..++.+-|..++|.+ .+++| +..|++|++.++++||+.+|.|. |
T Consensus 54 ~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H----------- 121 (455)
T PF00232_consen 54 CDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H----------- 121 (455)
T ss_dssp TGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------
T ss_pred ccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------
Confidence 35678999999999999999999999999999976 78888 99999999999999999999776 4
Q ss_pred cccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhh
Q 009335 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLF 406 (537)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l 406 (537)
..+|.|+.+. .|-. .|.-++.|.+|.+-..++|.+..
T Consensus 122 ~~~P~~l~~~------------ggw~----------------~~~~~~~F~~Ya~~~~~~~gd~V 158 (455)
T PF00232_consen 122 FDLPLWLEDY------------GGWL----------------NRETVDWFARYAEFVFERFGDRV 158 (455)
T ss_dssp S--BHHHHHH------------TGGG----------------STHHHHHHHHHHHHHHHHHTTTB
T ss_pred cccccceeec------------cccc----------------CHHHHHHHHHHHHHHHHHhCCCc
Confidence 4699999842 1222 24558899999999999998844
No 15
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.59 E-value=0.00032 Score=75.62 Aligned_cols=112 Identities=15% Similarity=0.254 Sum_probs=88.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC----CCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~----p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~ 341 (537)
......+++|++.||++|++..++.+-|..++|.+ +++-.+..|+++++.++++||+.+|.|.-|
T Consensus 67 ~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~----------- 135 (474)
T PRK09852 67 IDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF----------- 135 (474)
T ss_pred CchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-----------
Confidence 46778999999999999999999999999999964 477889999999999999999999977733
Q ss_pred cccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEEe
Q 009335 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (537)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~V 416 (537)
.+|.|+.+ ++ .|-. .|..++.|.+|.+-..++|.+..+- -||.|..|
T Consensus 136 -~~P~~l~~---~~--------GGW~----------------~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 136 -DVPMHLVT---EY--------GSWR----------------NRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred -CCCHHHHH---hc--------CCCC----------------CHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 69999863 11 2222 2455889999999999999884431 14556653
No 16
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=97.51 E-value=0.00036 Score=74.87 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=87.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc---cchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y---DWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~I 342 (537)
......+++|++.||++|++.-+..+-|..|+|.+.+.+ -+..|++|++.++++||+-+|.|- | .
T Consensus 50 ~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H-----------~ 117 (469)
T PRK13511 50 SDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H-----------F 117 (469)
T ss_pred cchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------C
Confidence 467889999999999999999999999999999766544 577899999999999999999665 4 5
Q ss_pred ccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEEe
Q 009335 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (537)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~V 416 (537)
.||.|+.+ +.|-.| |..++.|.+|.+-..++|.+ .+. -||.|..+
T Consensus 118 dlP~~L~~------------~GGW~n----------------~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 118 DTPEALHS------------NGDWLN----------------RENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred CCcHHHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 79999973 233333 34578899999999888887 541 24556543
No 17
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.42 E-value=0.00052 Score=74.05 Aligned_cols=112 Identities=9% Similarity=0.197 Sum_probs=87.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC----CCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~----p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~ 341 (537)
......+++||+.||++|++..++.+-|..++|.+ +++-.+.+|++|++.++++||+.+|-|- |
T Consensus 65 ~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-H----------- 132 (477)
T PRK15014 65 VDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-H----------- 132 (477)
T ss_pred cCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-C-----------
Confidence 35678999999999999999999999999999964 4666789999999999999999999665 3
Q ss_pred cccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEEe
Q 009335 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (537)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~V 416 (537)
..+|.|+.+ ++ .|-. .|.-++.|.+|.+-..++|.+..+- -||.|+.+
T Consensus 133 ~dlP~~L~~---~y--------GGW~----------------n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~ 181 (477)
T PRK15014 133 FEMPLHLVQ---QY--------GSWT----------------NRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINN 181 (477)
T ss_pred CCCCHHHHH---hc--------CCCC----------------ChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccc
Confidence 469999973 11 2222 2345889999998888888874321 26777764
No 18
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.39 E-value=0.0013 Score=62.35 Aligned_cols=123 Identities=11% Similarity=0.178 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeec-cCCCC---cccchHHHHHHHHHHHcCCcEEEEEeeec----cCCCCCCCcc
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVE-GWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHE----YGANDSGDAW 341 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE-~~~p~---~YDWSgY~~L~~mvr~~GLKv~vvmSFHq----CGGNVGDt~~ 341 (537)
...+++|+.||++|++.|+|.+.|..++ +..+. .--|..++++++.+++.||+|++ .+|. |.++-+....
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil--d~h~~~~w~~~~~~~~~~ 98 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL--DLHNAPGWANGGDGYGNN 98 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE--EEEESTTCSSSTSTTTTH
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE--EeccCccccccccccccc
Confidence 4889999999999999999999995555 43233 34578899999999999999966 8888 3333333333
Q ss_pred cccChhHHh----hh---ccCCCeEeeCCCCCccccccccccccccccCCCc------chHHHHHHHHHHHHHHhhhhh
Q 009335 342 ISLPQWVME----IG---KGNQDIFFTDREGRRNTECLSWGVDKERVLNGRT------GIEVYFDFMRSFRTEFDDLFV 407 (537)
Q Consensus 342 IpLP~WV~e----~g---~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRT------pie~Y~DFMrSFr~~Fa~~l~ 407 (537)
.....|+.+ .. +.+|.++ .|-+=++|...+.. +.+.|.+|++...+.+.+.-.
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~-------------~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~ 164 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVV-------------GWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADP 164 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTE-------------EEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHhhhhhhccccCCCCcEE-------------EEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCC
Confidence 334445433 11 2223222 23333566654442 357888999998888887533
No 19
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.00086 Score=74.94 Aligned_cols=143 Identities=21% Similarity=0.334 Sum_probs=91.1
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHH---HHHHHHcCCcEEEEEeeeccC-CCCCCCccc
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYREL---FNIIREFNLKVQVVMAFHEYG-ANDSGDAWI 342 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L---~~mvr~~GLKv~vvmSFHqCG-GNVGDt~~I 342 (537)
..++-|..-|+++|++|+|+|.+-|+|..-|+ .||+||||+-.+| +.+++++||-|++=+.=--|+ .|-|
T Consensus 46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~G----- 119 (649)
T KOG0496|consen 46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFG----- 119 (649)
T ss_pred CChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCC-----
Confidence 46899999999999999999999999999999 8999999996655 667889999998743322231 2222
Q ss_pred ccChhHHhhhccCCCeEeeCCCCCcccccccccccccc----ccCCCc-c------hHHHHHHHHHHHHHHhhhhhccce
Q 009335 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKER----VLNGRT-G------IEVYFDFMRSFRTEFDDLFVAGLI 411 (537)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~p----vl~GRT-p------ie~Y~DFMrSFr~~Fa~~l~~~vI 411 (537)
-+|.|+. ..|.|.|..-+.-...|.=.|.-=-+| +|..+- | -..|-.+-+.+++....|++...+
T Consensus 120 G~P~wL~----~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~ 195 (649)
T KOG0496|consen 120 GLPWWLR----NVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAV 195 (649)
T ss_pred Ccchhhh----hCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceE
Confidence 4886664 668877644433322221122211122 221110 1 245666666677777777765555
Q ss_pred eEEEeccC
Q 009335 412 CAVEIGLG 419 (537)
Q Consensus 412 ~eI~VGLG 419 (537)
..+..+.|
T Consensus 196 m~~~l~~g 203 (649)
T KOG0496|consen 196 LATSLGTG 203 (649)
T ss_pred EEEecCCC
Confidence 44444444
No 20
>PLN02814 beta-glucosidase
Probab=97.33 E-value=0.001 Score=72.49 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=88.4
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccc---hHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW---SGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDW---SgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~I 342 (537)
......+++|++.||++|++.-+..+-|..|+|.+++..|- ..|++|++.++++||+-+|-|. | .
T Consensus 73 ~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H-----------~ 140 (504)
T PLN02814 73 SDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H-----------Y 140 (504)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 46789999999999999999999999999999987777775 6799999999999999999665 4 5
Q ss_pred ccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEE
Q 009335 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVE 415 (537)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~ 415 (537)
.||.|+.+ ++ .|-. .|.-++.|.+|.+-..++|.+..+- -||.|..
T Consensus 141 dlP~~L~~---~y--------GGW~----------------n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~ 187 (504)
T PLN02814 141 DLPQSLED---EY--------GGWI----------------NRKIIEDFTAFADVCFREFGEDVKLWTTINEAT 187 (504)
T ss_pred CCCHHHHH---hc--------CCcC----------------ChhHHHHHHHHHHHHHHHhCCcCCEEEeccccc
Confidence 79999973 11 2222 3455889999999999999885431 1455655
No 21
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=97.33 E-value=0.00089 Score=71.98 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=86.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~I 342 (537)
......+++|++.||++|++.-+..+-|..++|.+++++| ...|++||+.++++||+-+|.|- | .
T Consensus 49 ~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H-----------~ 116 (467)
T TIGR01233 49 SDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H-----------F 116 (467)
T ss_pred CchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C-----------C
Confidence 4678999999999999999999999999999998777663 67899999999999999998665 4 5
Q ss_pred ccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhh-ccceeEEEe
Q 009335 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV-AGLICAVEI 416 (537)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~-~~vI~eI~V 416 (537)
.||.|+.+ +.|-. .|.-++.|.+|.+-..++|.+ .+ =-||.|..+
T Consensus 117 dlP~~L~~------------~GGW~----------------n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 117 DTPEALHS------------NGDFL----------------NRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred CCcHHHHH------------cCCCC----------------CHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 69999973 23333 245588888888888888876 32 124556543
No 22
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.31 E-value=0.004 Score=57.03 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCCEEEEee---e-ee----eeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccC
Q 009335 274 QEISHMKALNVDGVIVNC---W-WG----IVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDV---W-WG----iVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP 345 (537)
+-++.||++|||.|+|.+ + |. .+-+..|+- .-.-+.++++.+++.||+|++.++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 446788999999999944 2 22 122222332 35669999999999999999999964 44
Q ss_pred hhHHhhhccCCCeEeeCCCCC--ccccccccccccccccCCCcchHHHHHHHHHHHHHHhh
Q 009335 346 QWVMEIGKGNQDIFFTDREGR--RNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (537)
Q Consensus 346 ~WV~e~g~~~PDI~ytDr~G~--Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~ 404 (537)
.|+. +++||=+.+|++|+ +..+....+.-.+++ ..-|+||+....+++-+
T Consensus 70 ~~~~---~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~------ns~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 70 EDAA---ERHPEWFVRDADGRPMRGERFGYPGWYTCCL------NSPYREFLLEQIREILD 121 (132)
T ss_pred hHHH---HhCCceeeECCCCCCcCCCCcCCCCceecCC------CccHHHHHHHHHHHHHH
Confidence 5555 78999999999998 223333322111222 23588888877777655
No 23
>PLN02998 beta-glucosidase
Probab=97.23 E-value=0.0012 Score=71.77 Aligned_cols=112 Identities=13% Similarity=0.201 Sum_probs=88.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~I 342 (537)
......+++||+.||++|++.-+..+-|..|+|.+.+.+| ...|++|++.++++||+-+|-|- | .
T Consensus 78 ~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H-----------~ 145 (497)
T PLN02998 78 CDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H-----------F 145 (497)
T ss_pred ccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 4678999999999999999999999999999998777664 56899999999999999999665 4 5
Q ss_pred ccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEEe
Q 009335 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (537)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~V 416 (537)
.||.|+.+ ++ .|- ..|..++.|.+|.+-..++|.+..+- =||.|..+
T Consensus 146 dlP~~L~~---~y--------GGW----------------~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 146 DLPQALED---EY--------GGW----------------LSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCCHHHHH---hh--------CCc----------------CCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 79999973 11 222 23455889999999999999884321 14556653
No 24
>PLN02849 beta-glucosidase
Probab=97.22 E-value=0.0014 Score=71.40 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=88.4
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~I 342 (537)
......+++||+.||++|++.-+..+-|..++|.+.+..| ...|++|++.++++||+-+|-|. | .
T Consensus 75 ~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H-----------~ 142 (503)
T PLN02849 75 CDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H-----------Y 142 (503)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------C
Confidence 4678999999999999999999999999999998766555 56799999999999999999665 4 5
Q ss_pred ccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEEe
Q 009335 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (537)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~V 416 (537)
.||.|+.+ ++ .|-. .|.-++.|.+|.+-..++|.+..+- -||.|..+
T Consensus 143 dlP~~L~~---~y--------GGW~----------------nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 143 DHPQYLED---DY--------GGWI----------------NRRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CCcHHHHH---hc--------CCcC----------------CchHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 79999973 11 2322 3455889999999999999884431 14556653
No 25
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=97.05 E-value=0.0027 Score=68.56 Aligned_cols=112 Identities=13% Similarity=0.234 Sum_probs=86.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC-CCc---ccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQK---YAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~-p~~---YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~ 341 (537)
......+++||+.||++|++.-+..+-|..|+|.+ +++ =-..+|++|++.++++||+-+|-|- |
T Consensus 69 ~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H----------- 136 (478)
T PRK09593 69 IDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H----------- 136 (478)
T ss_pred cchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------
Confidence 46789999999999999999999999999999975 333 3367899999999999999999665 4
Q ss_pred cccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEEe
Q 009335 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (537)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~V 416 (537)
..||.|+.+ ++ .|-. .|..++.|.+|.+-..++|.+..+- -||.|..+
T Consensus 137 ~dlP~~L~~---~~--------GGW~----------------n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 137 FDCPMHLIE---EY--------GGWR----------------NRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred cCCCHHHHh---hc--------CCCC----------------ChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 579999972 11 2222 2455788999998888888874431 15556654
No 26
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=97.02 E-value=0.0027 Score=68.55 Aligned_cols=112 Identities=13% Similarity=0.185 Sum_probs=86.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC-C---cccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNP-Q---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p-~---~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~ 341 (537)
......+++||+.||++|++.-+..+-|..|+|.+. + +=-...|++||+.++++||+-+|-|. |
T Consensus 63 ~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H----------- 130 (476)
T PRK09589 63 IDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H----------- 130 (476)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------
Confidence 467889999999999999999999999999999752 2 33367899999999999999999664 4
Q ss_pred cccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEEe
Q 009335 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (537)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~V 416 (537)
..||.|+.+ ++ .|-. .|.-++.|.+|.+-..++|.+..+. -||.|..+
T Consensus 131 ~dlP~~L~~---~y--------GGW~----------------n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 131 FEMPYHLVT---EY--------GGWR----------------NRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred CCCCHHHHH---hc--------CCcC----------------ChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 479999972 11 2222 2455788999999988888874431 25667653
No 27
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.012 Score=64.03 Aligned_cols=132 Identities=15% Similarity=0.218 Sum_probs=96.7
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-ccc---chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCc
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQ-KYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDA 340 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~-~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~ 340 (537)
........++||+.||++|++..++.+-|..+-|.+.+ ..| -..|++||+.|.+.||+..+-|. |
T Consensus 54 a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-H---------- 122 (460)
T COG2723 54 ASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-H---------- 122 (460)
T ss_pred ccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-c----------
Confidence 35668899999999999999999999999999996655 444 45599999999999999999776 4
Q ss_pred ccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhc-cceeEEEeccC
Q 009335 341 WISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEIGLG 419 (537)
Q Consensus 341 ~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~-~vI~eI~VGLG 419 (537)
..+|.|+.+ ++ .|- ..|..++.|..|.+-.-++|.+..+- -|.-|+.|=+.
T Consensus 123 -fd~P~~L~~---~y--------gGW----------------~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~ 174 (460)
T COG2723 123 -FDLPLWLQK---PY--------GGW----------------ENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVE 174 (460)
T ss_pred -cCCcHHHhh---cc--------CCc----------------cCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhc
Confidence 579999983 32 232 23566899999998888888876541 24445544333
Q ss_pred CCccccCCCCCCCCCcccCCCcccc
Q 009335 420 PSGELKYPSLSERMGWRYPGIGEFQ 444 (537)
Q Consensus 420 PaGELRYPSYp~~~GW~~PGiGEFQ 444 (537)
++-..|-+.|++..++
T Consensus 175 ---------~~y~~~~~~p~~~~~~ 190 (460)
T COG2723 175 ---------LGYLYGGHPPGIVDPK 190 (460)
T ss_pred ---------ccccccccCCCccCHH
Confidence 2222344557766543
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.83 E-value=0.12 Score=53.22 Aligned_cols=204 Identities=15% Similarity=0.179 Sum_probs=121.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeee-ee------eccCC------CCc-ccchHHHHHHHHHHHcCCcEEEEEeeec
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWW-GI------VEGWN------PQK-YAWSGYRELFNIIREFNLKVQVVMAFHE 331 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWW-Gi------VE~~~------p~~-YDWSgY~~L~~mvr~~GLKv~vvmSFHq 331 (537)
+..++.+++-|+.||++|++.|-+.||+ |. +++.. +++ -.|..+..+++.+++.||+|++=|-|--
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 4478999999999999999999999994 32 33321 111 1266699999999999999999553221
Q ss_pred cCCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhccce
Q 009335 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLI 411 (537)
Q Consensus 332 CGGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI 411 (537)
-....+.. .-..|.|+. .++|+...+...+..+.=||..+ .+.=++|+.+...++..-.+ |
T Consensus 95 ~~~~~~~~-~~~~p~~~~---~~~~~~~~~~~~~~~~~~~lnP~------------~PeVr~~i~~~v~Eiv~~Yd---v 155 (311)
T PF02638_consen 95 NAPDVSHI-LKKHPEWFA---VNHPGWVRTYEDANGGYYWLNPG------------HPEVRDYIIDIVKEIVKNYD---V 155 (311)
T ss_pred CCCchhhh-hhcCchhhe---ecCCCceeecccCCCCceEECCC------------CHHHHHHHHHHHHHHHhcCC---C
Confidence 11111111 112577876 56677555544333222233322 67788999998888765322 4
Q ss_pred eEEEeccCCCccccCCCCCCCCCcccCCCcccccccHHHHHHHHHHHHHhCCcCcCCCCCCCCCCCCCCCCCcccccCCc
Q 009335 412 CAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGD 491 (537)
Q Consensus 412 ~eI~VGLGPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~fr~aAk~kGn~~WG~gP~nAg~YNs~P~~t~FF~~gG~ 491 (537)
..|.+= -.|||.. . .| ||.+..+.|++.-.. .| + ..|.+
T Consensus 156 DGIhlD-----dy~yp~~--~-----~g------~~~~~~~~y~~~~g~--------~~-----~-~~~~d--------- 194 (311)
T PF02638_consen 156 DGIHLD-----DYFYPPP--S-----FG------YDFPDVAAYEKYTGK--------DP-----F-SSPED--------- 194 (311)
T ss_pred CeEEec-----ccccccc--c-----CC------CCCccHHHHHHhcCc--------CC-----C-CCccc---------
Confidence 444322 1133311 0 11 556666666653210 00 0 00000
Q ss_pred cccccchhhHHHhHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q 009335 492 YDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEETKIIVKVCME 535 (537)
Q Consensus 492 w~S~YGkFFLsWYS~~Li~HGdrVL~~A~~~F~g~~l~aKV~G~ 535 (537)
..+.+|-.+.+-.--.+|-...+++=+.+.+++=..|+
T Consensus 195 ------~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~ 232 (311)
T PF02638_consen 195 ------DAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGI 232 (311)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecc
Confidence 01788999998888888888887777777777765554
No 29
>PLN02705 beta-amylase
Probab=96.01 E-value=0.011 Score=66.33 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=29.4
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhccceeEEEeccCCCccccCCCCCCCCC
Q 009335 384 GRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG 434 (537)
Q Consensus 384 GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGLGPaGELRYPSYp~~~G 434 (537)
|+=-.|||..||.+--.+-+.-.+ .-+=|.||..--.|-+-|...+
T Consensus 437 GiGEFQCYDkymla~Lk~aA~a~G-----hpeWG~gP~dAg~YN~~P~~tg 482 (681)
T PLN02705 437 GIGEFQCYDKYSQQNLRKAAKSRG-----HSFWARGPDNAGQYNSRPHETG 482 (681)
T ss_pred CcceeeeccHHHHHHHHHHHHHhC-----cHhhccCCCCccccCCCCCCCC
Confidence 444478999998754333333222 3456778988888888776543
No 30
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=95.95 E-value=0.018 Score=56.56 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=37.2
Q ss_pred eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhHH
Q 009335 293 WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (537)
Q Consensus 293 WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~ 349 (537)
|+.+|+ .+|+|||+..+++++.++++||++..-..++.+ ..|.|+.
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~ 48 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVF 48 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhh
Confidence 899999 899999999999999999999998542222211 3789986
No 31
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=94.79 E-value=0.087 Score=56.75 Aligned_cols=99 Identities=19% Similarity=0.324 Sum_probs=60.6
Q ss_pred HHHHHHHHHHH-HcCCCEEEEeeeeeee-------cc-CCCC--cccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 009335 270 ELIRQEISHMK-ALNVDGVIVNCWWGIV-------EG-WNPQ--KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 270 ~al~~dL~~LK-~aGVdGV~VDVWWGiV-------E~-~~p~--~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGD 338 (537)
..++.+|+.++ ++|+..|++ |++. .. .+++ .|||+..|++++.+.++|||..+-|+|
T Consensus 39 ~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f--------- 106 (486)
T PF01229_consen 39 ADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF--------- 106 (486)
T ss_dssp HHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S---------
T ss_pred HHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe---------
Confidence 56788888886 799999986 3333 11 1233 399999999999999999999999996
Q ss_pred CcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhh
Q 009335 339 DAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDL 405 (537)
Q Consensus 339 t~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~ 405 (537)
.|.++.. ....+| . ..|+... -.-.+.+.++++.|..++.+-
T Consensus 107 -----~p~~~~~---~~~~~~-~-~~~~~~p---------------p~~~~~W~~lv~~~~~h~~~R 148 (486)
T PF01229_consen 107 -----MPMALAS---GYQTVF-W-YKGNISP---------------PKDYEKWRDLVRAFARHYIDR 148 (486)
T ss_dssp -----B-GGGBS---S--EET-T-TTEE-S----------------BS-HHHHHHHHHHHHHHHHHH
T ss_pred -----chhhhcC---CCCccc-c-ccCCcCC---------------cccHHHHHHHHHHHHHHHHhh
Confidence 6777752 111111 1 1111111 123789999999999999873
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.36 E-value=0.16 Score=53.32 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeec
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHq 331 (537)
.-|+.||+.||+.|++-|| |.|...|..|...-.++++.++++||||.+ .||-
T Consensus 28 d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~vll--dfHY 80 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKVLL--DFHY 80 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EEEE--EE-S
T ss_pred CHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeEEE--eecc
Confidence 3578899999999999997 556435889999999999999999999998 9994
No 33
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=93.06 E-value=0.33 Score=49.89 Aligned_cols=63 Identities=22% Similarity=0.512 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCEEEEe-ee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEE--EEEeeeccCCCCCCCcccccChhHHh
Q 009335 275 EISHMKALNVDGVIVN-CW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ--VVMAFHEYGANDSGDAWISLPQWVME 350 (537)
Q Consensus 275 dL~~LK~aGVdGV~VD-VW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~--vvmSFHqCGGNVGDt~~IpLP~WV~e 350 (537)
..+.+-....+.|+.. .. |+.+|+ .+|+|||+..+++++-++++|+++. +++. |. -.|.||..
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVW-HS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEE-cc-----------cccceeee
Confidence 4555555678888876 23 999999 7999999999999999999999995 4443 42 47999983
No 34
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=92.48 E-value=0.59 Score=52.05 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=78.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--Ccccch---HHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNP--QKYAWS---GYRELFNIIREFNLKVQVVMAFHEYGANDSGDA 340 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p--~~YDWS---gY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~ 340 (537)
+...-..++|++.||++||++-+..+-|..+=|.+. +..|.. +|..|++.+.++||+-.|-| ||
T Consensus 87 ~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH---------- 155 (524)
T KOG0626|consen 87 VDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH---------- 155 (524)
T ss_pred chhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec----------
Confidence 345668999999999999999999999999999776 446654 59999999999999999855 46
Q ss_pred ccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhh
Q 009335 341 WISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLF 406 (537)
Q Consensus 341 ~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l 406 (537)
--+|+|+.+ ||-+| -.++-++.+++|.+--=++|.+..
T Consensus 156 -wDlPq~LeD-------------------eYgGw--------Ln~~ivedF~~yA~~CF~~fGDrV 193 (524)
T KOG0626|consen 156 -WDLPQALED-------------------EYGGW--------LNPEIVEDFRDYADLCFQEFGDRV 193 (524)
T ss_pred -CCCCHHHHH-------------------Hhccc--------cCHHHHHHHHHHHHHHHHHhcccc
Confidence 359999972 22222 223457788888877666776643
No 35
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=91.88 E-value=2.2 Score=43.41 Aligned_cols=129 Identities=14% Similarity=0.026 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChh-
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW- 347 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~W- 347 (537)
+++.+.+++|.++|++.|.||.= |+.+=........-.+.+++++.+.+.+....+ .+|-|.||...+-...-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHHH
Confidence 57888899999999999999985 775443223345566777888888876666665 67999999743322222333
Q ss_pred HHhh-hccCCCeEeeCCCCCc--cccccc-cccccccc---cCCCcc-hHHHHHHHHHHHH
Q 009335 348 VMEI-GKGNQDIFFTDREGRR--NTECLS-WGVDKERV---LNGRTG-IEVYFDFMRSFRT 400 (537)
Q Consensus 348 V~e~-g~~~PDI~ytDr~G~R--n~EyLS-lg~D~~pv---l~GRTp-ie~Y~DFMrSFr~ 400 (537)
+++. .+..-|.++.|-...+ +-|.|. +..|+.-+ ...|++ ++.-.+-.+.+++
T Consensus 233 i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~~~~k~l~~GvVd~~~~~~e~~e~v~~ri~~ 293 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNSRAGGLEPLKELPYDKKVGLGVVDVKSPEVESPEEVKDRIEE 293 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCCCCcchHHHHhCCCCCEEEeeeecCCCCCCCCHHHHHHHHHH
Confidence 2222 2455788887776543 344443 22243332 345665 4555554444444
No 36
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.75 E-value=0.59 Score=47.64 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=56.3
Q ss_pred CccEEEEeece---eecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 248 YIPVYVMLANH---VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 248 ~vpVyVMLPLd---~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
.+||+||+=-- .+-+. ..-+.|.++++.+|++|++||.+.+- ..+++.|....++|++.++ |+++.
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~---~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~vT 119 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSD---GEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLAVT 119 (248)
T ss_pred CCCeEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCceE
Confidence 48999998442 22111 24478999999999999999998764 3588999999999999995 67776
Q ss_pred EEEeeecc
Q 009335 325 VVMAFHEY 332 (537)
Q Consensus 325 vvmSFHqC 332 (537)
.=++|-.|
T Consensus 120 FHRAfD~~ 127 (248)
T PRK11572 120 FHRAFDMC 127 (248)
T ss_pred Eechhhcc
Confidence 65676544
No 37
>PRK10785 maltodextrin glucosidase; Provisional
Probab=91.34 E-value=5.9 Score=44.35 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc-------------chHHHHHHHHHHHcCCcEEEEEeeeccCC
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD-------------WSgY~~L~~mvr~~GLKv~vvmSFHqCGG 334 (537)
|-+.|.+.|..||++||++|-+.=- .|..+--.|| ...+++|++.+++.||||++=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pi---f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPI---FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCc---ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 5699999999999999999988643 2332223343 25789999999999999998777766662
Q ss_pred CCCCCcccccChhHHhhhc-----------cCCCeEeeCCCCCcccccccc-ccccccccCCCcchHHHHHHHHHHH-HH
Q 009335 335 NDSGDAWISLPQWVMEIGK-----------GNQDIFFTDREGRRNTECLSW-GVDKERVLNGRTGIEVYFDFMRSFR-TE 401 (537)
Q Consensus 335 NVGDt~~IpLP~WV~e~g~-----------~~PDI~ytDr~G~Rn~EyLSl-g~D~~pvl~GRTpie~Y~DFMrSFr-~~ 401 (537)
. -| |+..... .+.|-|+.+..| .|.+| +++.+|-|. +-.+..++||..=. +-
T Consensus 254 ~--------~~-~f~~~~~~~~ga~~~~~spy~dwf~~~~~~----~~~~w~g~~~lPdLN--~~np~v~~~l~~~~~~v 318 (598)
T PRK10785 254 S--------HP-WFDRHNRGTGGACHHPDSPWRDWYSFSDDG----RALDWLGYASLPKLD--FQSEEVVNEIYRGEDSI 318 (598)
T ss_pred C--------CH-HHHHhhccccccccCCCCCcceeeEECCCC----CcCCcCCCCcCcccc--CCCHHHHHHHHhhhhHH
Confidence 1 23 6654321 122444444444 24565 366777665 33456667665311 12
Q ss_pred HhhhhhccceeEEEeccCCCccccCCCCCCCCCcccCC---Cc--ccccccHHHHHHHHHHHHHhC
Q 009335 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPG---IG--EFQCYDRYLQQSLRKAAKLRG 462 (537)
Q Consensus 402 Fa~~l~~~vI~eI~VGLGPaGELRYPSYp~~~GW~~PG---iG--EFQCYDky~~a~fr~aAk~kG 462 (537)
+.-++.. .| ..+||++=- ++ ...|.+....+.|++.+++..
T Consensus 319 ~~~Wl~~----------------~~----giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~ 364 (598)
T PRK10785 319 VRHWLKA----------------PY----NIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEEN 364 (598)
T ss_pred HHHhhcC----------------CC----CCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhC
Confidence 2223321 01 357888721 21 122445566788888888765
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=90.84 E-value=0.91 Score=43.08 Aligned_cols=57 Identities=26% Similarity=0.469 Sum_probs=43.5
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCcc-cc-------hHHHHHHHHHHHcCCcEEE
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN--PQKY-AW-------SGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~--p~~Y-DW-------SgY~~L~~mvr~~GLKv~v 325 (537)
-+++.|++.|+.||++|++.|.|- |.-.+... |-++ ++ ..+..+++.+.+.|+||.+
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~ 83 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFV 83 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEE
Confidence 467899999999999999999766 54444322 3333 11 2489999999999999999
No 39
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=90.44 E-value=0.5 Score=47.21 Aligned_cols=80 Identities=16% Similarity=0.331 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhH
Q 009335 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV 348 (537)
+.+.++++.++|+++|.++.-|+.-.--+|..|. +-+++++++.+++.|.++ .+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~----~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV----IHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce----EEEECC-Cch-----hHHHHH
Confidence 4556677778899999999988743311344454 999999999999998765 459996 432 344455
Q ss_pred HhhhccCCCeEeeCCC
Q 009335 349 MEIGKGNQDIFFTDRE 364 (537)
Q Consensus 349 ~e~g~~~PDI~ytDr~ 364 (537)
.+ ...|++-.|..
T Consensus 240 ~~---~~~d~~~~d~~ 252 (330)
T cd03465 240 AD---LGADVFSIDVT 252 (330)
T ss_pred HH---hCCCeEeeccc
Confidence 53 33566666543
No 40
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=90.07 E-value=3.6 Score=45.97 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCEEEE-eee-ee-eeccCCCCccc-------------------------chHHHHHHHHHHHcCC
Q 009335 270 ELIRQEISHMKALNVDGVIV-NCW-WG-IVEGWNPQKYA-------------------------WSGYRELFNIIREFNL 321 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~V-DVW-WG-iVE~~~p~~YD-------------------------WSgY~~L~~mvr~~GL 321 (537)
..+.+.|..||++||+.|.+ +|+ .. .-|......|+ ...+++|++.+.++||
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi 243 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGI 243 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence 46678899999999999976 332 11 11110111121 2469999999999999
Q ss_pred cEEEEEee-eccC
Q 009335 322 KVQVVMAF-HEYG 333 (537)
Q Consensus 322 Kv~vvmSF-HqCG 333 (537)
+|++=+-| |-|+
T Consensus 244 ~VilDvV~NH~~~ 256 (605)
T TIGR02104 244 RVIMDVVYNHTYS 256 (605)
T ss_pred EEEEEEEcCCccC
Confidence 99987777 5443
No 41
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.05 E-value=4 Score=41.60 Aligned_cols=83 Identities=6% Similarity=0.177 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCccc-----chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 009335 267 VDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYA-----WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~~~p~~YD-----WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt 339 (537)
.+.+.+.+-++.+++.| ++.|.+|.-|-. .-+.|. |-.-+++++.+++.|+|+++++.=
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P---------- 92 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHP---------- 92 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeEEEEECC----------
Confidence 56788999999999998 689999986532 123333 445789999999999999886652
Q ss_pred cccccChhHHhhhccCCCeEeeCCCC
Q 009335 340 AWISLPQWVMEIGKGNQDIFFTDREG 365 (537)
Q Consensus 340 ~~IpLP~WV~e~g~~~PDI~ytDr~G 365 (537)
.|..-.=+.+++. ..+.+.++..|
T Consensus 93 -~i~~~s~~~~e~~-~~g~~vk~~~g 116 (303)
T cd06592 93 -FINTDSENFREAV-EKGYLVSEPSG 116 (303)
T ss_pred -eeCCCCHHHHhhh-hCCeEEECCCC
Confidence 2222222333333 34688888888
No 42
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=88.86 E-value=0.78 Score=45.39 Aligned_cols=62 Identities=10% Similarity=-0.012 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeec-----cCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVE-----GWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE-----~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGN 335 (537)
+.+.+.++++.++|+++|.++.=|+... ++.-.+|-|.+|+++++.+++.|.+++ .|-||+.
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~----lH~cg~~ 210 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIV----HHSCYDA 210 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceE----EEECCCH
Confidence 3456667788899999999998777543 212234558999999999988887654 4999963
No 43
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=88.39 E-value=4.1 Score=40.80 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=70.5
Q ss_pred CCCccc-CHHHHHHHHHHHHHcC-CCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 009335 262 NFCQLV-DPELIRQEISHMKALN-VDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (537)
Q Consensus 262 ~~~~l~-~~~al~~dL~~LK~aG-VdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt 339 (537)
.+|+.. +.+...+-|+.+-.+| ++.|.|+..+. =...+++.+.+++.|.||++ |+|.-.
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~-----------~~~~~~l~~~~~~~~~kvI~--S~H~f~------ 146 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG-----------KDVVKEMVAFAHEHGVKVVL--SYHDFE------ 146 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC-----------hHHHHHHHHHHHHcCCEEEE--eeCCCC------
Confidence 344433 3333334466666778 99999987653 12377888999999999877 999322
Q ss_pred cccccChhHHhhhccCCCeEeeCCCCCccccccccccccccc-cCCCcchHHHHHHHHHHHHHHhhhhhccceeEEEecc
Q 009335 340 AWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGL 418 (537)
Q Consensus 340 ~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pv-l~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGL 418 (537)
-..+.|-+. ++ -.++.++|+|-+.+ ...+++.++.+-+ .|..++..-. ..+-=|.++|
T Consensus 147 --~tP~~~~l~------~~---------~~~~~~~gaDivKia~~a~~~~D~~~ll--~~~~~~~~~~--~~~P~i~~~M 205 (253)
T PRK02412 147 --KTPPKEEIV------ER---------LRKMESLGADIVKIAVMPQSEQDVLTLL--NATREMKELY--ADQPLITMSM 205 (253)
T ss_pred --CCcCHHHHH------HH---------HHHHHHhCCCEEEEEecCCCHHHHHHHH--HHHHHHHhcC--CCCCEEEEeC
Confidence 223444321 01 13455677886665 3445554444322 3444443210 1234478999
Q ss_pred CCCccc
Q 009335 419 GPSGEL 424 (537)
Q Consensus 419 GPaGEL 424 (537)
|+.|-+
T Consensus 206 G~~G~~ 211 (253)
T PRK02412 206 GKLGRI 211 (253)
T ss_pred CCCchH
Confidence 998854
No 44
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=87.73 E-value=0.51 Score=48.54 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=68.5
Q ss_pred CCCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcE
Q 009335 244 TGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (537)
Q Consensus 244 ~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv 323 (537)
+...+|.|.+.+--..-.+...+.+. +++-|+.+++.||.||.||.+ ..++|+-=..|.++++.+.+.+|-|
T Consensus 82 a~~KgVgi~lw~~~~~~~~~~~~~~~--~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lmv 153 (273)
T PF10566_consen 82 AKEKGVGIWLWYHSETGGNVANLEKQ--LDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLMV 153 (273)
T ss_dssp HHHTT-EEEEEEECCHTTBHHHHHCC--HHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-EE
T ss_pred HHHcCCCEEEEEeCCcchhhHhHHHH--HHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcEE
Confidence 35568888888766552111113333 599999999999999999986 2488888899999999999887654
Q ss_pred EEEEeeeccCCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccccccccc
Q 009335 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWG 375 (537)
Q Consensus 324 ~vvmSFHqCGGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg 375 (537)
-||.|= .|.=+. +.+|.++ .++|.|-.||-.|.
T Consensus 154 ----nfHg~~----------kPtG~~---RTyPN~m--T~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 154 ----NFHGAT----------KPTGLR---RTYPNLM--TREGVRGQEYNKWS 186 (273)
T ss_dssp ----EETTS-------------TTHH---HCSTTEE--EE--S--GGGGGTT
T ss_pred ----EecCCc----------CCCccc---ccCccHH--HHHHhhhhhhcccc
Confidence 689664 555233 5889875 67899999995454
No 45
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=87.10 E-value=5.8 Score=39.35 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=45.6
Q ss_pred CccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEE
Q 009335 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvm 327 (537)
.+|+.+|.=++.+- ...+++-++.++++|++||.+.-- | +....++++.++++|++.++.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~----~ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P----PEEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C----HHHHHHHHHHHHHcCCcEEEEe
Confidence 46788885544331 123566789999999999999521 1 1357899999999999999988
Q ss_pred e
Q 009335 328 A 328 (537)
Q Consensus 328 S 328 (537)
+
T Consensus 137 ~ 137 (242)
T cd04724 137 A 137 (242)
T ss_pred C
Confidence 7
No 46
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=86.40 E-value=1.7 Score=41.38 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccC-CCCcc-------------cchHHHHHHHHHHHcCCcEEEEEee-ecc
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKY-------------AWSGYRELFNIIREFNLKVQVVMAF-HEY 332 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~-~p~~Y-------------DWSgY~~L~~mvr~~GLKv~vvmSF-HqC 332 (537)
|.+.|.+.|..||++||++|-+.--+ |.. ...-| .+..+++|++.+++.||||++=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~Pi~---~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLSPIF---ESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEESS-E---ESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceeccccc---ccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 35788999999999999999885322 221 11112 2457899999999999999875544 654
Q ss_pred C
Q 009335 333 G 333 (537)
Q Consensus 333 G 333 (537)
.
T Consensus 79 ~ 79 (316)
T PF00128_consen 79 D 79 (316)
T ss_dssp T
T ss_pred c
Confidence 4
No 47
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=85.73 E-value=5.8 Score=42.68 Aligned_cols=79 Identities=20% Similarity=0.403 Sum_probs=52.1
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeee-----------eeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWW-----------GIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWW-----------GiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGN 335 (537)
.+.+.+.+.++.+|++|++.+.||-=| |.-++ .+.+|= +|.+.|++.|++.|||.=+-+..=.+ |
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v--~ 130 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMV--S 130 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EEEEEEETTEE--E
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeEEEEeccccc--c
Confidence 478899999999999999999998876 33333 233442 58999999999999999886543222 2
Q ss_pred CCCCcccccChhHH
Q 009335 336 DSGDAWISLPQWVM 349 (537)
Q Consensus 336 VGDt~~IpLP~WV~ 349 (537)
.+-...-..|.|+.
T Consensus 131 ~~S~l~~~hPdw~l 144 (394)
T PF02065_consen 131 PDSDLYREHPDWVL 144 (394)
T ss_dssp SSSCHCCSSBGGBT
T ss_pred chhHHHHhCcccee
Confidence 22233334688876
No 48
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=85.50 E-value=5.8 Score=41.97 Aligned_cols=127 Identities=13% Similarity=0.215 Sum_probs=66.2
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccC
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP 345 (537)
|.|+++.+.|+..||++||+.|+|-- |.+. .-+++-++++.++||.|++=|+--.|- + +-.-|.+
T Consensus 49 Lad~~~C~rDi~~l~~LgiNtIRVY~----vdp~-------~nHd~CM~~~~~aGIYvi~Dl~~p~~s--I--~r~~P~~ 113 (314)
T PF03198_consen 49 LADPEACKRDIPLLKELGINTIRVYS----VDPS-------KNHDECMSAFADAGIYVILDLNTPNGS--I--NRSDPAP 113 (314)
T ss_dssp GG-HHHHHHHHHHHHHHT-SEEEES-------TT-------S--HHHHHHHHHTT-EEEEES-BTTBS------TTS---
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC-------CCHHHHHHHHHhCCCEEEEecCCCCcc--c--cCCCCcC
Confidence 78999999999999999999999863 4432 248999999999999999977733111 1 1111334
Q ss_pred hhH----------HhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhccceeEEE
Q 009335 346 QWV----------MEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVE 415 (537)
Q Consensus 346 ~WV----------~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~ 415 (537)
.|= .+.-+++|.+ |-|.+-++= ........ =.-|++++.+-+..|+.+.-.-.|-
T Consensus 114 sw~~~l~~~~~~vid~fa~Y~N~-------------LgFf~GNEV-in~~~~t~-aap~vKAavRD~K~Yi~~~~~R~IP 178 (314)
T PF03198_consen 114 SWNTDLLDRYFAVIDAFAKYDNT-------------LGFFAGNEV-INDASNTN-AAPYVKAAVRDMKAYIKSKGYRSIP 178 (314)
T ss_dssp ---HHHHHHHHHHHHHHTT-TTE-------------EEEEEEESS-S-STT-GG-GHHHHHHHHHHHHHHHHHSSS----
T ss_pred CCCHHHHHHHHHHHHHhccCCce-------------EEEEeccee-ecCCCCcc-cHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 782 2234555543 233333321 11111111 2345788888888888776666777
Q ss_pred eccCCCc
Q 009335 416 IGLGPSG 422 (537)
Q Consensus 416 VGLGPaG 422 (537)
||.=.+-
T Consensus 179 VGYsaaD 185 (314)
T PF03198_consen 179 VGYSAAD 185 (314)
T ss_dssp EEEEE--
T ss_pred eeEEccC
Confidence 7765544
No 49
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=85.24 E-value=1.3 Score=43.83 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=48.7
Q ss_pred CCCccEEEEeec---eeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCc
Q 009335 246 TPYIPVYVMLAN---HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLK 322 (537)
Q Consensus 246 ~~~vpVyVMLPL---d~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLK 322 (537)
...+||+||+=- |.+-+. ..-+.|.++++.+|++|++||.+.+ +- .++..|....++|++.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 357899999854 222221 2347899999999999999998865 33 488999999999999987 777
Q ss_pred EEEEEee
Q 009335 323 VQVVMAF 329 (537)
Q Consensus 323 v~vvmSF 329 (537)
+..=++|
T Consensus 117 ~tFHRAf 123 (201)
T PF03932_consen 117 VTFHRAF 123 (201)
T ss_dssp EEE-GGG
T ss_pred EEEeCcH
Confidence 6554444
No 50
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=85.24 E-value=6 Score=40.49 Aligned_cols=111 Identities=22% Similarity=0.296 Sum_probs=74.8
Q ss_pred CCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
...+|+.+|.=...|-. -.+++=++.+|++||+||.|+=. | +....++.+.++++||.++.
T Consensus 85 ~~~~pivlm~Y~N~i~~-------~G~e~F~~~~~~aGvdGlIipDL--------P----~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIFQ-------YGIERFFKEAKEAGVDGLIIPDL--------P----PEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp CTSSEEEEEE-HHHHHH-------H-HHHHHHHHHHHTEEEEEETTS--------B----GGGHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEeeccHHhc-------cchHHHHHHHHHcCCCEEEEcCC--------C----hHHHHHHHHHHHHcCCeEEE
Confidence 46799999988876532 45677789999999999998633 1 34568889999999999999
Q ss_pred EEeeeccCCCCCCCcccccChhHHhhhccCCC-eEeeCCCCCccccccccccccccccCCCcch-HHHHHHHHHHHHHH
Q 009335 326 VMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRRNTECLSWGVDKERVLNGRTGI-EVYFDFMRSFRTEF 402 (537)
Q Consensus 326 vmSFHqCGGNVGDt~~IpLP~WV~e~g~~~PD-I~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpi-e~Y~DFMrSFr~~F 402 (537)
.++= + ..+..+..+.+.-+. |+++...|.. +.|+.+ ..+.++.+..|+..
T Consensus 146 lv~p-----------~-t~~~Ri~~i~~~a~gFiY~vs~~GvT---------------G~~~~~~~~l~~~i~~ik~~~ 197 (259)
T PF00290_consen 146 LVAP-----------T-TPEERIKKIAKQASGFIYLVSRMGVT---------------GSRTELPDELKEFIKRIKKHT 197 (259)
T ss_dssp EEET-----------T-S-HHHHHHHHHH-SSEEEEESSSSSS---------------STTSSCHHHHHHHHHHHHHTT
T ss_pred EECC-----------C-CCHHHHHHHHHhCCcEEEeeccCCCC---------------CCcccchHHHHHHHHHHHhhc
Confidence 8871 1 246677777766667 5556777653 334443 44667777666644
No 51
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=84.85 E-value=1.7 Score=44.26 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCC---cccchHHHHHHHHHHHcCCcEEEEEeeeccCC
Q 009335 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~---~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGG 334 (537)
+...++++.++|+++|.+.--|+.-.--+|. +|-+-+++++++.+++.|.. + .+|-||.
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~--~--ilH~CG~ 243 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGI--T--VLHICGF 243 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCc--e--EEEECCC
Confidence 3455667789999999888778732122344 55599999999999998743 3 3699973
No 52
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=84.82 E-value=8.7 Score=37.30 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=67.2
Q ss_pred ecCCCccc-CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 009335 260 INNFCQLV-DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 260 V~~~~~l~-~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGD 338 (537)
...+|.+. +.+...+-|+.+-.+|++.|.|+..+ .-..+++..+++.|.||++ |+|.-.+
T Consensus 65 ~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~kiI~--S~H~f~~---- 125 (225)
T cd00502 65 KSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKIIG--SYHDFSG---- 125 (225)
T ss_pred cccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEEEE--EeccCCC----
Confidence 33444432 23333444666667789999988755 2478888888888998888 9995432
Q ss_pred CcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccc-cCCCcchHHHHHHHHHHHHHHhhhhhccceeEEEec
Q 009335 339 DAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIG 417 (537)
Q Consensus 339 t~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pv-l~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~VG 417 (537)
++ +.+.|..-. .++-.+|+|-+.+ ...+++.++. +.+ .|..++.... .+.=|.++
T Consensus 126 tp--~~~~l~~~~-----------------~~~~~~gadivKla~~~~~~~D~~-~ll-~~~~~~~~~~---~~p~i~~~ 181 (225)
T cd00502 126 TP--SDEELVSRL-----------------EKMAALGADIVKIAVMANSIEDNL-RLL-KFTRQVKNLY---DIPLIAIN 181 (225)
T ss_pred Cc--CHHHHHHHH-----------------HHHHHhCCCEEEEEecCCCHHHHH-HHH-HHHHHHHhcC---CCCEEEEE
Confidence 22 233333211 1223445665554 2233333332 222 3444443321 24457899
Q ss_pred cCCCccc
Q 009335 418 LGPSGEL 424 (537)
Q Consensus 418 LGPaGEL 424 (537)
||+.|.+
T Consensus 182 MG~~G~~ 188 (225)
T cd00502 182 MGELGKL 188 (225)
T ss_pred cCCCCch
Confidence 9999864
No 53
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=84.31 E-value=9.1 Score=37.45 Aligned_cols=111 Identities=17% Similarity=0.269 Sum_probs=66.1
Q ss_pred HHHHHH-HHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhHHhhh
Q 009335 274 QEISHM-KALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIG 352 (537)
Q Consensus 274 ~dL~~L-K~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~e~g 352 (537)
+-|+.+ ...|++.|.|+.+|.. ...+++++.+++.|.||++ |+|.-. .|+ +.+.|+. .
T Consensus 82 ~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kvI~--S~H~f~----~tp--~~~~l~~-~- 140 (228)
T TIGR01093 82 EELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKIIM--SYHDFQ----KTP--SWEEIVE-R- 140 (228)
T ss_pred HHHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEEEE--eccCCC----CCC--CHHHHHH-H-
Confidence 335554 6789999999998751 2377888888999998888 999432 121 1222321 1
Q ss_pred ccCCCeEeeCCCCCccccccccccccccc-cCCCcchHHHHHHHHHHHHHHhhhhhccceeEEEeccCCCcccc
Q 009335 353 KGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELK 425 (537)
Q Consensus 353 ~~~PDI~ytDr~G~Rn~EyLSlg~D~~pv-l~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGLGPaGELR 425 (537)
-.++.++|+|-+.+ ...+++.++.+= -+|..++.... .+-=|.++||+.|-+-
T Consensus 141 ---------------~~~~~~~gaDivKia~~a~~~~D~~~l--l~~~~~~~~~~---~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 141 ---------------LEKALSYGADIVKIAVMANSKEDVLTL--LEITNKVDEHA---DVPLITMSMGDRGKIS 194 (228)
T ss_pred ---------------HHHHHHhCCCEEEEEeccCCHHHHHHH--HHHHHHHHhcC---CCCEEEEeCCCCChhH
Confidence 12344677776665 234444333322 24555554431 2445789999988653
No 54
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=84.07 E-value=9.4 Score=38.93 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=65.1
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
..+|+.+|.=+..|- .-.+++-++.+|++||+||.|.-. | +....++++.++++||+.+.+
T Consensus 90 ~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL-----P-------~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL-----P-------YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC-----C-------HHHHHHHHHHHHHcCCCEEEE
Confidence 346887887776543 235777899999999999999754 1 234789999999999999998
Q ss_pred EeeeccCCCCCCCcccccChhHHhhhccCCC-eEeeCCCCCc
Q 009335 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRR 367 (537)
Q Consensus 327 mSFHqCGGNVGDt~~IpLP~WV~e~g~~~PD-I~ytDr~G~R 367 (537)
++-+ +.+..+..+.+.-.. |+++.+.|..
T Consensus 151 v~Pt------------T~~eri~~i~~~a~gFIY~vS~~GvT 180 (263)
T CHL00200 151 IAPT------------SSKSRIQKIARAAPGCIYLVSTTGVT 180 (263)
T ss_pred ECCC------------CCHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 8732 245677776665554 5655776654
No 55
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=83.87 E-value=6.2 Score=38.14 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
-+++.|+.++++|+++|++.. + ++. ...++.+++++.||++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~------~-----~~~-~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF------P-----YDW-DAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC------C-----ccC-CHHHHHHHHHHcCCeEEE
Confidence 588999999999999999842 1 122 267788899999999865
No 56
>PLN02361 alpha-amylase
Probab=83.75 E-value=3.8 Score=44.16 Aligned_cols=66 Identities=9% Similarity=0.157 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccc-------------hHHHHHHHHHHHcCCcEEEEEee-eccC
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-------------SGYRELFNIIREFNLKVQVVMAF-HEYG 333 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDW-------------SgY~~L~~mvr~~GLKv~vvmSF-HqCG 333 (537)
-++.|.+.|..||++||++|-+.--. |..++..|+- ..+++|++.+++.||||++=+-+ |-||
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 46899999999999999999887643 2222333332 46899999999999999874444 8777
Q ss_pred CCC
Q 009335 334 AND 336 (537)
Q Consensus 334 GNV 336 (537)
..-
T Consensus 104 ~~~ 106 (401)
T PLN02361 104 TTQ 106 (401)
T ss_pred CCC
Confidence 543
No 57
>PRK01060 endonuclease IV; Provisional
Probab=83.30 E-value=2.3 Score=41.56 Aligned_cols=64 Identities=3% Similarity=0.016 Sum_probs=42.8
Q ss_pred EeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 254 MLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 254 MLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
|+++++.++- .+.+++.|+.++++|+++|++.+..... ..+..++=...+++-+++.+.||++.
T Consensus 1 ~~~~g~~~~~-----~~~~~~~l~~~~~~G~d~vEl~~~~p~~--~~~~~~~~~~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 1 MKLIGAHVSA-----AGGLEGAVAEAAEIGANAFMIFTGNPQQ--WKRKPLEELNIEAFKAACEKYGISPE 64 (281)
T ss_pred CCeEEEeeec-----CCCHHHHHHHHHHcCCCEEEEECCCCCC--CcCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 6677776531 2239999999999999999996541100 01122333346778889999999964
No 58
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=82.97 E-value=2.1 Score=43.65 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=57.8
Q ss_pred CCccEEEEeec---eeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcE
Q 009335 247 PYIPVYVMLAN---HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (537)
Q Consensus 247 ~~vpVyVMLPL---d~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv 323 (537)
..+|||+|.== |.|-++. .-+.+++|+++.|++|++||.+.+- ..+|+.|=.-..+|++... ||-|
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~~---E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSDD---ELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccChH---HHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 67999999732 2332222 3478999999999999999998775 3589999999999999887 5555
Q ss_pred EEEEeeeccC
Q 009335 324 QVVMAFHEYG 333 (537)
Q Consensus 324 ~vvmSFHqCG 333 (537)
..=|+|-.|-
T Consensus 119 TFHrAFD~~~ 128 (241)
T COG3142 119 TFHRAFDECP 128 (241)
T ss_pred eeehhhhhcC
Confidence 5555887665
No 59
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=82.91 E-value=3.4 Score=44.19 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
..+.|+++|+..|++||||..+++. ....+.+.-...+++.+...|+||.+.+-++
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~ 70 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKLFFSFDMN 70 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 6789999999999999999999996 2445678889999999999999998855443
No 60
>PLN02229 alpha-galactosidase
Probab=82.73 E-value=2.9 Score=45.74 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=50.9
Q ss_pred cCHHHHHHHHHH-----HHHcCCCEEEEeeeeeeeccCC-------CCcccchHHHHHHHHHHHcCCcEEEEEe--eecc
Q 009335 267 VDPELIRQEISH-----MKALNVDGVIVNCWWGIVEGWN-------PQKYAWSGYRELFNIIREFNLKVQVVMA--FHEY 332 (537)
Q Consensus 267 ~~~~al~~dL~~-----LK~aGVdGV~VDVWWGiVE~~~-------p~~YDWSgY~~L~~mvr~~GLKv~vvmS--FHqC 332 (537)
.+++.+++...+ ||.+|.+.|.||.=|...++.. +.+|- +|.+.|++.|++.|||+=.... ...|
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGIy~d~G~~TC 155 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGIYSDAGVFTC 155 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEEeccCCCccc
Confidence 478888888887 4999999999998664333222 33443 5899999999999999865433 4456
Q ss_pred CCCCC
Q 009335 333 GANDS 337 (537)
Q Consensus 333 GGNVG 337 (537)
+|+.|
T Consensus 156 ~~~pG 160 (427)
T PLN02229 156 QVRPG 160 (427)
T ss_pred CCCCC
Confidence 65544
No 61
>smart00642 Aamy Alpha-amylase domain.
Probab=81.88 E-value=6.3 Score=37.16 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=48.4
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeecc-CCCCcc-------------cchHHHHHHHHHHHcCCcEEEEEeeec
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEG-WNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHE 331 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~-~~p~~Y-------------DWSgY~~L~~mvr~~GLKv~vvmSFHq 331 (537)
.-+.+.+.+.|..||++||++|-+.-.+-..+. .....| ....+++|++.+++.||+|++=+-+.-
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 346789999999999999999977654322210 001111 346789999999999999988666655
Q ss_pred cCC
Q 009335 332 YGA 334 (537)
Q Consensus 332 CGG 334 (537)
|+.
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 554
No 62
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=81.69 E-value=8.2 Score=39.20 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=64.8
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
..+|+.+|.=...|-. -.+++=++.+|++||+||-|+= - -+....++++.+++.||++++.
T Consensus 88 ~~~p~vlm~Y~N~i~~-------~G~e~f~~~~~~aGvdGviipD----------L--p~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQ-------YGVERFAADAAEAGVDGLIIPD----------L--PPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHhh-------cCHHHHHHHHHHcCCcEEEECC----------C--CHHHHHHHHHHHHHcCCcEEEE
Confidence 4578888886665432 3566779999999999999961 1 2356889999999999999986
Q ss_pred EeeeccCCCCCCCcccccChhHHhhhccCCC-eEeeCCCCC
Q 009335 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR 366 (537)
Q Consensus 327 mSFHqCGGNVGDt~~IpLP~WV~e~g~~~PD-I~ytDr~G~ 366 (537)
++ ++- .+..+..+.+..++ |+++...|.
T Consensus 149 va-----------p~t-~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 149 VA-----------PTT-TDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred eC-----------CCC-CHHHHHHHHHhCCCcEEEEeCCCC
Confidence 66 222 35688877777788 555566654
No 63
>PRK10150 beta-D-glucuronidase; Provisional
Probab=80.85 E-value=64 Score=36.03 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=43.8
Q ss_pred CCccEEEEeeceeecC---CCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcE
Q 009335 247 PYIPVYVMLANHVINN---FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (537)
Q Consensus 247 ~~vpVyVMLPLd~V~~---~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv 323 (537)
++.|||+.-- ....+ .|.-.+.+.+..+|+.||++|+|.|++- + ..+ -.++++++-+.||-|
T Consensus 288 NG~pv~lrG~-~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~s--h-~p~-----------~~~~~~~cD~~GllV 352 (604)
T PRK10150 288 NGKPFYFKGF-GKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTS--H-YPY-----------SEEMLDLADRHGIVV 352 (604)
T ss_pred CCEEEEEEee-eccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEec--c-CCC-----------CHHHHHHHHhcCcEE
Confidence 6777777521 00001 1233577889999999999999999992 1 111 246789999999988
Q ss_pred EE
Q 009335 324 QV 325 (537)
Q Consensus 324 ~v 325 (537)
+.
T Consensus 353 ~~ 354 (604)
T PRK10150 353 ID 354 (604)
T ss_pred EE
Confidence 75
No 64
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=80.42 E-value=3.3 Score=43.03 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHHHc-CCCEEEEeeeeee-----eccCCCCcccchHHHHHHHHHHHcC-CcEEEEEeeeccC
Q 009335 274 QEISHMKAL-NVDGVIVNCWWGI-----VEGWNPQKYAWSGYRELFNIIREFN-LKVQVVMAFHEYG 333 (537)
Q Consensus 274 ~dL~~LK~a-GVdGV~VDVWWGi-----VE~~~p~~YDWSgY~~L~~mvr~~G-LKv~vvmSFHqCG 333 (537)
+-+++..++ |+|+|.+--.|+. +.++.=.+|-|-+++++++.+++.| ..+ .+|.||
T Consensus 159 ~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~pi----ilH~cG 221 (321)
T cd03309 159 KLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALI----VHHSCG 221 (321)
T ss_pred HHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCce----EEEeCC
Confidence 334444445 9999998766775 4443344455999999999999984 332 459998
No 65
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=80.38 E-value=2.9 Score=43.96 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=53.0
Q ss_pred CccEEEEeeceeecCC-----C----cccCHHHHHH-----------HHHHHHHcCCCE-EEEeee--ee-eeccCCCCc
Q 009335 248 YIPVYVMLANHVINNF-----C----QLVDPELIRQ-----------EISHMKALNVDG-VIVNCW--WG-IVEGWNPQK 303 (537)
Q Consensus 248 ~vpVyVMLPLd~V~~~-----~----~l~~~~al~~-----------dL~~LK~aGVdG-V~VDVW--WG-iVE~~~p~~ 303 (537)
.+-..+..|++++... + -+.+|+.+.+ -+++..++|+++ |.+..+ |+ ++.++.=.+
T Consensus 172 pi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~e 251 (378)
T cd03308 172 NAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEK 251 (378)
T ss_pred ccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHH
Confidence 4556788999855411 1 1234554443 445566789998 777776 54 444333333
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEeeeccC
Q 009335 304 YAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (537)
Q Consensus 304 YDWSgY~~L~~mvr~~GLKv~vvmSFHqCG 333 (537)
|-|-+++++++.+++.|.+++. |-||
T Consensus 252 f~~P~~k~i~~~i~~~g~~~il----h~cG 277 (378)
T cd03308 252 FYWPSFKKVVEGLAARGQRIFL----FFEG 277 (378)
T ss_pred HHHHHHHHHHHHHHhcCCCEEE----EcCC
Confidence 4499999999999998876543 9998
No 66
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=80.26 E-value=3.3 Score=40.72 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccc--hHHHHHHHHHHHcCCcEEEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW--SGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDW--SgY~~L~~mvr~~GLKv~vv 326 (537)
..-.|.+.|+.++++|+++|++.++.. .. .+..++| ....++-+++++.||+|..+
T Consensus 14 ~~~~~~e~l~~~~~~G~~~VEl~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 14 KGECWLERLQLAKTCGFDFVEMSVDET--DD-RLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEecCCc--cc-hhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 356799999999999999999965432 11 1333444 44677888999999999864
No 67
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=79.38 E-value=4.6 Score=43.16 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeecc----CCCCcccchHHHHHHHHHHHcCCcEEEEEeeec
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~----~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHq 331 (537)
+.-|..||++||+.|++-||=-=... -+-|.=|-..-.++.+.+++.|+||.+ -||-
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~--dFHY 126 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLL--DFHY 126 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEe--eccc
Confidence 44578899999999999999332211 123455666777788888899999988 9993
No 68
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=79.30 E-value=4.6 Score=39.99 Aligned_cols=54 Identities=11% Similarity=-0.029 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEEeeeeee---eccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 273 RQEISHMKALNVDGVIVNCWWGI---VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGi---VE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
++.|+.||++|++.|.+++= +. .+.-. +..+|..+.+.++.++++|+++.+-|-
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i 179 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGI 179 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEE
Confidence 56788999999999988743 21 11111 246888999999999999999766433
No 69
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=79.02 E-value=4.3 Score=45.51 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=41.2
Q ss_pred HHHHHHHH-HHHHHcCCCEEEE-eeeeeeeccCCCCcccch-----------------HHHHHHHHHHHcCCcEEEEEee
Q 009335 269 PELIRQEI-SHMKALNVDGVIV-NCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 269 ~~al~~dL-~~LK~aGVdGV~V-DVWWGiVE~~~p~~YDWS-----------------gY~~L~~mvr~~GLKv~vvmSF 329 (537)
.+.|.+.| ..||++||+.|.+ +|+.. |...+|. .+++|++.+.++||+|++=+-|
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 47777886 9999999999999 66532 1111222 4899999999999999875555
No 70
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=78.61 E-value=10 Score=40.34 Aligned_cols=101 Identities=16% Similarity=0.275 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCCEEEEeee-eeeeccC---CCCcc----cchHHHHHHHHHHHcCCcEEEEEeeecc-CCCCCCCccc
Q 009335 272 IRQEISHMKALNVDGVIVNCW-WGIVEGW---NPQKY----AWSGYRELFNIIREFNLKVQVVMAFHEY-GANDSGDAWI 342 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~VDVW-WGiVE~~---~p~~Y----DWSgY~~L~~mvr~~GLKv~vvmSFHqC-GGNVGDt~~I 342 (537)
.++++..+|++|++.|++++- |.+ +.- .|... .+ ..+++++-+++.||+|.+ .+|.- |++.++....
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V~i--D~H~~~~~~~~~~~s~ 150 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYVLI--DLHGYPGGNNGHEHSG 150 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHH-HHHHHHHHHHhcCeeEEE--EecccCCCCCCcCccc
Confidence 389999999999999999998 554 542 12222 23 788999999999999988 88865 4455555444
Q ss_pred ccChhHHhhhccCCC--------eEeeCCCCCccccccccccccccc
Q 009335 343 SLPQWVMEIGKGNQD--------IFFTDREGRRNTECLSWGVDKERV 381 (537)
Q Consensus 343 pLP~WV~e~g~~~PD--------I~ytDr~G~Rn~EyLSlg~D~~pv 381 (537)
....+-. +++. .+..++.++ ..+-|.+-+=++|.
T Consensus 151 ~~~~~~~----~~~~~~~~~~~w~~ia~~f~~-~~~VIg~~~~NEP~ 192 (407)
T COG2730 151 YTSDYKE----ENENVEATIDIWKFIANRFKN-YDTVIGFELINEPN 192 (407)
T ss_pred ccccccc----cchhHHHHHHHHHHHHHhccC-CCceeeeeeecCCc
Confidence 3443332 1111 122344444 55566665556665
No 71
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=78.29 E-value=8 Score=40.76 Aligned_cols=84 Identities=11% Similarity=0.239 Sum_probs=54.0
Q ss_pred ccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCcccch-----HHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 009335 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~~~p~~YDWS-----gY~~L~~mvr~~GLKv~vvmSFHqCGGNVGD 338 (537)
..+.+.+.+-++.+++.| ++++.+|.+|.. .-+.|.|. ..+++++.+++.|+|+++.+.=
T Consensus 39 ~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P--------- 105 (441)
T PF01055_consen 39 YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHP--------- 105 (441)
T ss_dssp BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEES---------
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeccccccc----cccccccccccccchHHHHHhHhhCCcEEEEEeec---------
Confidence 456888999999999866 588999999875 23344444 5899999999999999885442
Q ss_pred CcccccChh---HHhhhccCCCeEeeCCCC
Q 009335 339 DAWISLPQW---VMEIGKGNQDIFFTDREG 365 (537)
Q Consensus 339 t~~IpLP~W---V~e~g~~~PDI~ytDr~G 365 (537)
.|....- ..+.+++ .++++++.+|
T Consensus 106 --~v~~~~~~~~~~~~~~~-~~~~v~~~~g 132 (441)
T PF01055_consen 106 --FVSNDSPDYENYDEAKE-KGYLVKNPDG 132 (441)
T ss_dssp --EEETTTTB-HHHHHHHH-TT-BEBCTTS
T ss_pred --ccCCCCCcchhhhhHhh-cCceeecccC
Confidence 2222222 2222222 3778888888
No 72
>PLN02591 tryptophan synthase
Probab=78.22 E-value=12 Score=38.09 Aligned_cols=89 Identities=11% Similarity=0.164 Sum_probs=63.6
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
..+|+.+|.=...|- .-.+++=++.+|++||+||-|+= .-+..-.++.+.++++||..+++
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipD------------LP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPD------------LPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCC------------CCHHHHHHHHHHHHHcCCeEEEE
Confidence 346888887776553 24677789999999999999972 12466788999999999999997
Q ss_pred EeeeccCCCCCCCcccccChhHHhhhccCCC-eEeeCCCCC
Q 009335 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR 366 (537)
Q Consensus 327 mSFHqCGGNVGDt~~IpLP~WV~e~g~~~PD-I~ytDr~G~ 366 (537)
.+ ++ +-+..+..+.+.-++ |++..+.|.
T Consensus 138 v~-----------Pt-t~~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 138 TT-----------PT-TPTERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred eC-----------CC-CCHHHHHHHHHhCCCcEEEeeCCCC
Confidence 76 22 235688877777666 433354443
No 73
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=77.52 E-value=13 Score=38.90 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhHHhhhc
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGK 353 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~e~g~ 353 (537)
++|+.....||+.|+|-.-+...+ .-.+.++.+|+.|+++.+.+. .....-|..+.+..+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~----------~~~~~i~~ak~~G~~v~~~l~----------~a~~~~~e~l~~~a~ 151 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEAD----------VSEQHIGLARELGMDTVGFLM----------MSHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHH----------HHHHHHHHHHHCCCeEEEEEE----------eccCCCHHHHHHHHH
Confidence 678999999999999887554322 369999999999999988666 222334666665422
Q ss_pred ----cCCC-eEeeCCCCCccc
Q 009335 354 ----GNQD-IFFTDREGRRNT 369 (537)
Q Consensus 354 ----~~PD-I~ytDr~G~Rn~ 369 (537)
.-+| |.++|-.|.-.+
T Consensus 152 ~~~~~Ga~~i~i~DT~G~~~P 172 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGALLP 172 (337)
T ss_pred HHHhCCCCEEEeCCCCCCCCH
Confidence 2244 666777776544
No 74
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=76.89 E-value=3.8 Score=41.66 Aligned_cols=56 Identities=11% Similarity=0.025 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHcCCcEEEEEeeeccCC
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGG 334 (537)
.+-++++.++|+++|.+..-|+...--+|..|. +-+++++++.+++ . .+ -+|-||+
T Consensus 174 ~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~--~--~~--ilh~cG~ 232 (326)
T cd03307 174 IEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG--C--PT--ILHICGN 232 (326)
T ss_pred HHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc--C--Cc--EEEECCC
Confidence 355666778999999998889844312466666 9999999999998 2 22 3588984
No 75
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.85 E-value=5.5 Score=39.03 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=46.4
Q ss_pred eeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchH--HHHHHHHHHHcCCcEEEE
Q 009335 255 LANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSG--YRELFNIIREFNLKVQVV 326 (537)
Q Consensus 255 LPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSg--Y~~L~~mvr~~GLKv~vv 326 (537)
+||++... .++..-.|.+.++.+|++|+++|++.+. +.. ....++|+. .+++-+++++.||+|..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVDESDE----RLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecCcccc----chhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 46666542 2334457899999999999999999643 110 123345653 678899999999999864
No 76
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.70 E-value=48 Score=36.53 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=81.0
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeee-eee------eccCCCC-------cccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNCW-WGI------VEGWNPQ-------KYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDVW-WGi------VE~~~p~-------~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
.+..+..+...|..|..+|+|.|-.-|| +|. +.+...+ .=.|.-+..+++.+++.||+|++=+.|-
T Consensus 59 v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 59 VLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 4789999999999999999999999999 873 2332222 1134456677788889999999933322
Q ss_pred ccCCCCCCCcc--cccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhh
Q 009335 331 EYGANDSGDAW--ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (537)
Q Consensus 331 qCGGNVGDt~~--IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~ 404 (537)
--+ + .+.. .--|.|.. .+.|+..|....|.. .-+|.|- -++.=++|+.+...+...
T Consensus 139 ~~a-~--~~s~~~~~~p~~~~---~~~~~~~~~~~~~~~----~~~~ldP--------g~Pevq~~i~~lv~evV~ 196 (418)
T COG1649 139 RMA-P--PTSPLTKRHPHWLT---TKRPGWVYVRHQGWG----KRVWLDP--------GIPEVQDFITSLVVEVVR 196 (418)
T ss_pred ccC-C--CCChhHhhCCCCcc---cCCCCeEEEecCCce----eeeEeCC--------CChHHHHHHHHHHHHHHh
Confidence 111 1 1222 22478887 566777777777643 1133332 156778888888887765
No 77
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=76.66 E-value=16 Score=38.43 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhHHhhh
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIG 352 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~e~g 352 (537)
.++|+....+||+.|+|-.-+...+ --.+.++.+|+.|+++++.+. ...-.-|.-+.+..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d----------~~~~~i~~ak~~G~~v~~~l~----------~s~~~~~e~l~~~a 149 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEAD----------VSEQHIGMARELGMDTVGFLM----------MSHMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHH----------HHHHHHHHHHHcCCeEEEEEE----------cccCCCHHHHHHHH
Confidence 3578999999999999887544322 368999999999999987554 11223455555432
Q ss_pred ----ccCCC-eEeeCCCCCccc
Q 009335 353 ----KGNQD-IFFTDREGRRNT 369 (537)
Q Consensus 353 ----~~~PD-I~ytDr~G~Rn~ 369 (537)
+.-+| |.++|-.|.-.+
T Consensus 150 ~~~~~~Ga~~i~i~DT~G~~~P 171 (333)
T TIGR03217 150 KLMESYGADCVYIVDSAGAMLP 171 (333)
T ss_pred HHHHhcCCCEEEEccCCCCCCH
Confidence 22344 666777776544
No 78
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=76.05 E-value=36 Score=34.45 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=46.4
Q ss_pred CccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEE
Q 009335 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvm 327 (537)
.+|+..|+=...|- .-.+++-++.++++||+||.+.- |+ +..-.++++.+++.||+.++++
T Consensus 87 ~~plv~m~Y~Npi~-------~~G~e~f~~~~~~aGvdgviipD-----lp-------~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 87 NIPIGLLTYYNLIF-------RKGVEEFYAKCKEVGVDGVLVAD-----LP-------LEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CCCEEEEEeccHHh-------hhhHHHHHHHHHHcCCCEEEECC-----CC-------hHHHHHHHHHHHHCCCcEEEEE
Confidence 46766666554331 24677789999999999999983 22 2456789999999999999877
Q ss_pred e
Q 009335 328 A 328 (537)
Q Consensus 328 S 328 (537)
+
T Consensus 148 ~ 148 (256)
T TIGR00262 148 A 148 (256)
T ss_pred C
Confidence 7
No 79
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=74.59 E-value=7.9 Score=42.99 Aligned_cols=61 Identities=11% Similarity=0.309 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchH-----------------HHHHHHHHHHcCCcEEEEEeee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----------------YRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSg-----------------Y~~L~~mvr~~GLKv~vvmSFH 330 (537)
+-..+.+.|..||++||++|.+-= +.| .++.++|.+ +++|++.+.+.||+|++=+-|.
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 447888999999999999997632 122 244455543 8999999999999998866664
Q ss_pred ccC
Q 009335 331 EYG 333 (537)
Q Consensus 331 qCG 333 (537)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 454
No 80
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=74.04 E-value=4 Score=41.50 Aligned_cols=56 Identities=5% Similarity=0.004 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEeeeeee---eccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCC
Q 009335 273 RQEISHMKALNVDGVIVNCWWGI---VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGi---VE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGG 334 (537)
.+-++++.++|+++|.+..=|+. +-++.=.+|-+-+++++++-+++. .+ .+|-||.
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~----~~--ilH~cG~ 241 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL----PT--ILHICGD 241 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC----Cc--EEEECCC
Confidence 44566677899999999888863 333223334488999999999876 33 4688973
No 81
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=73.55 E-value=45 Score=32.24 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=72.1
Q ss_pred EEeeceeecCCCccc-CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeec
Q 009335 253 VMLANHVINNFCQLV-DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (537)
Q Consensus 253 VMLPLd~V~~~~~l~-~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHq 331 (537)
|.+-+-+...+|.+. +.+.-.+-|+.+-.+|++.|.|+.+ .+..+.......+..+.||++ |+|-
T Consensus 57 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~iI~--S~H~ 122 (224)
T PF01487_consen 57 IIFTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKIIL--SYHD 122 (224)
T ss_dssp EEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEEEE--EEEE
T ss_pred EEEEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeEEE--Eecc
Confidence 333444455556553 4455556666777778999888655 133344447788888999888 9994
Q ss_pred cCCCCCCCcccccChh--HHhhhccCCCeEeeCCCCCccccccccccccccc-cCCCcchHHHHHHHHHHHHHHhhhhhc
Q 009335 332 YGANDSGDAWISLPQW--VMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVA 408 (537)
Q Consensus 332 CGGNVGDt~~IpLP~W--V~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pv-l~GRTpie~Y~DFMrSFr~~Fa~~l~~ 408 (537)
..+ -|.| +.+. -.+...+|+|-+.+ ...++..++.+ +..|..++.+.
T Consensus 123 f~~---------tp~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~--- 172 (224)
T PF01487_consen 123 FEK---------TPSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREE--- 172 (224)
T ss_dssp SS------------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHH---
T ss_pred CCC---------CCCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhc---
Confidence 432 2333 2211 12333466665544 34455555554 45555666654
Q ss_pred cceeEEEeccCCCccc
Q 009335 409 GLICAVEIGLGPSGEL 424 (537)
Q Consensus 409 ~vI~eI~VGLGPaGEL 424 (537)
..+-=|-++||+.|.+
T Consensus 173 ~~~p~i~~~MG~~G~~ 188 (224)
T PF01487_consen 173 PDIPVIAISMGELGRI 188 (224)
T ss_dssp TSSEEEEEEETGGGHH
T ss_pred cCCcEEEEEcCCCchh
Confidence 1467789999999864
No 82
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=73.26 E-value=3.2 Score=44.28 Aligned_cols=52 Identities=15% Similarity=0.434 Sum_probs=40.9
Q ss_pred EEEEeee---eeeeccCCCCcccchHHHHHHHHHHHcCCcEE--EEEeeeccCCCCCCCcccccChhHHh
Q 009335 286 GVIVNCW---WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ--VVMAFHEYGANDSGDAWISLPQWVME 350 (537)
Q Consensus 286 GV~VDVW---WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~--vvmSFHqCGGNVGDt~~IpLP~WV~e 350 (537)
.+-+.+| |..+|+ .+|.|+|..=+.+++-+|++||+++ ..+.-| ..|.|+..
T Consensus 59 n~iTpenemKwe~i~p-~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~------------q~P~W~~~ 115 (345)
T COG3693 59 NQITPENEMKWEAIEP-ERGRFNFEAADAIANFARKHNMPLHGHTLVWHS------------QVPDWLFG 115 (345)
T ss_pred cccccccccccccccC-CCCccCccchHHHHHHHHHcCCeeccceeeecc------------cCCchhhc
Confidence 4456666 999999 8999999999999999999999873 323322 47888873
No 83
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=72.86 E-value=3.5 Score=37.17 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 276 L~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
|+.+|++|+++|.+..++..-... . -...+++.+.+++.||++..+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~----~~~~~~~~~~~~~~gl~i~~~ 46 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K----DDEAEELRRLLEDYGLKIASL 46 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H----HHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c----hHHHHHHHHHHHHcCCeEEEE
Confidence 678999999999999986633320 0 356889999999999997663
No 84
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=71.39 E-value=11 Score=36.72 Aligned_cols=53 Identities=15% Similarity=0.408 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc--cc--hHHHHHHHHHHHcCCcEEEEEeee
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY--AW--SGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y--DW--SgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
-+.+.|+.++++|+++|++ |+. .+..| ++ ..-+++-+.+.+.||++..+..+|
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~ 70 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET 70 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecCcc
Confidence 5899999999999999998 321 11111 12 246788899999999986644433
No 85
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=71.04 E-value=39 Score=34.74 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=50.8
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEE---eee--eeeeccCC-CCcccchHHHHHHHHHHHcCCcEEEEE
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIV---NCW--WGIVEGWN-PQKYAWSGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~V---DVW--WGiVE~~~-p~~YDWSgY~~L~~mvr~~GLKv~vvm 327 (537)
.+-..+.|++-|+.|...|.+++.+ |-| -+.-|-.. .+.|.=+.+++|.+.+++.||.|++-+
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecC
Confidence 5677899999999999999999987 333 33333322 678888899999999999999999954
No 86
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=70.93 E-value=11 Score=39.05 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=48.7
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeecc----CCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAND 336 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~----~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNV 336 (537)
.+-+..++-+....+.|++.|.||..|---+. .--..+.+....+|++-.++.|.+|.+.+- |..+||+
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~-~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH-SETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE-CCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEe-CCcchhh
Confidence 36688899999999999999999999975332 112456778899999999999999999655 4455554
No 87
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=69.85 E-value=13 Score=37.70 Aligned_cols=88 Identities=15% Similarity=0.337 Sum_probs=58.3
Q ss_pred ccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCcccch-----HHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 009335 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~~~p~~YDWS-----gY~~L~~mvr~~GLKv~vvmSFHqCGGNVGD 338 (537)
..+.+.+.+-++.+|++| +|.+.+|.=|- ....-+.|+|. -.+++++.+++.|+|+++++ |-+ |+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~--~P~---i~~ 92 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWI--NPY---IAQ 92 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEe--cCC---CCC
Confidence 467889999999999999 88899998443 11111244444 68999999999999988854 321 111
Q ss_pred CcccccChhHHhhhccCCCeEeeCCCCCc
Q 009335 339 DAWISLPQWVMEIGKGNQDIFFTDREGRR 367 (537)
Q Consensus 339 t~~IpLP~WV~e~g~~~PDI~ytDr~G~R 367 (537)
+ -| +.++++ .++.|.++.+|..
T Consensus 93 ~----~~--~~~e~~-~~g~~v~~~~g~~ 114 (308)
T cd06593 93 K----SP--LFKEAA-EKGYLVKKPDGSV 114 (308)
T ss_pred C----ch--hHHHHH-HCCeEEECCCCCe
Confidence 1 12 233333 3578888877653
No 88
>PLN02808 alpha-galactosidase
Probab=69.56 E-value=8.8 Score=41.51 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=48.5
Q ss_pred cCHHHHHHHHHH-----HHHcCCCEEEEeeeeeeeccCCCCccc-----c-hHHHHHHHHHHHcCCcEEEEEe
Q 009335 267 VDPELIRQEISH-----MKALNVDGVIVNCWWGIVEGWNPQKYA-----W-SGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 267 ~~~~al~~dL~~-----LK~aGVdGV~VDVWWGiVE~~~p~~YD-----W-SgY~~L~~mvr~~GLKv~vvmS 328 (537)
.+++.+++...+ ||.+|.+.|.||.-|...++...|..- | ++.+.|++.|++.|||.=+...
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~ 118 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSD 118 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEec
Confidence 478888888887 599999999999888766554444322 2 6899999999999999966443
No 89
>PHA00442 host recBCD nuclease inhibitor
Probab=69.33 E-value=7.8 Score=31.99 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHc
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~ 319 (537)
.-|.+|++.||| ||++|.+..+|+.+.
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 457778888887 899999999998753
No 90
>PRK12313 glycogen branching enzyme; Provisional
Probab=68.32 E-value=13 Score=41.93 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=43.5
Q ss_pred ccCHHHHHHHH-HHHHHcCCCEEEEe-eeeeeeccCCCCcccch-----------------HHHHHHHHHHHcCCcEEEE
Q 009335 266 LVDPELIRQEI-SHMKALNVDGVIVN-CWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 266 l~~~~al~~dL-~~LK~aGVdGV~VD-VWWGiVE~~~p~~YDWS-----------------gY~~L~~mvr~~GLKv~vv 326 (537)
.-+-..+.+.| ..||++||+.|.+- |+ | .|...+|. .+++|++.+++.||+|++=
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34457777774 99999999999853 32 2 12223333 4999999999999999886
Q ss_pred EeeeccC
Q 009335 327 MAFHEYG 333 (537)
Q Consensus 327 mSFHqCG 333 (537)
+-|--|+
T Consensus 240 ~V~nH~~ 246 (633)
T PRK12313 240 WVPGHFP 246 (633)
T ss_pred ECCCCCC
Confidence 5553343
No 91
>PLN02389 biotin synthase
Probab=68.28 E-value=11 Score=40.37 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCEEEEeee--eeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 273 RQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVW--WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
+++|+.||++|++.+.++.= ...+..-.+ .-+|..+.+.++.+++.||++..
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~s~e~rl~ti~~a~~~Gi~v~s 231 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TRSYDDRLETLEAVREAGISVCS 231 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CCCHHHHHHHHHHHHHcCCeEeE
Confidence 57889999999999988421 111111111 23899999999999999999844
No 92
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=68.27 E-value=93 Score=37.41 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEeeeccC
Q 009335 308 GYRELFNIIREFNLKVQVVMAFHEYG 333 (537)
Q Consensus 308 gY~~L~~mvr~~GLKv~vvmSFHqCG 333 (537)
.++++++.+.++||+|++=+-|--|+
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVyNHt~ 430 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVYNHTN 430 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeeccccc
Confidence 38889999999999998755554343
No 93
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=68.24 E-value=8 Score=39.16 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeecc-CCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhHHhhh
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEG-WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIG 352 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~-~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~e~g 352 (537)
+-++++.++|+|+|.+.--++.+=+ +.=.+|-+-+++++++.+++.|.+ .+ -+|-|| ..+.-++.+ .
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~-~~--~lH~cG-----~~~~~~~~l-~--- 253 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAGKD-PV--ILHICG-----NTTPILDDL-A--- 253 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHETE--E--EEEETT-----HG-GGHHHH-H---
T ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-ce--EEEECC-----chHHHHHHH-H---
Confidence 4456777999999977664443322 112367899999999999999994 22 459998 332223333 3
Q ss_pred ccCCCeEeeCCC
Q 009335 353 KGNQDIFFTDRE 364 (537)
Q Consensus 353 ~~~PDI~ytDr~ 364 (537)
+...|++-.|..
T Consensus 254 ~~g~d~~~~~~~ 265 (343)
T PF01208_consen 254 DLGADVLSVDEK 265 (343)
T ss_dssp TSS-SEEEE-TT
T ss_pred hcCCCEEEEcCC
Confidence 234566666543
No 94
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=68.22 E-value=11 Score=45.91 Aligned_cols=62 Identities=15% Similarity=0.281 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe-ee-eeeec-cC----------CCCcccch-------------------------HH
Q 009335 268 DPELIRQEISHMKALNVDGVIVN-CW-WGIVE-GW----------NPQKYAWS-------------------------GY 309 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VD-VW-WGiVE-~~----------~p~~YDWS-------------------------gY 309 (537)
+-.+|.+.|..||++||+.|.+- |+ .+.+. .. +...|+|. .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 44788899999999999999653 43 33331 10 12345554 38
Q ss_pred HHHHHHHHHcCCcEEEEEee
Q 009335 310 RELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 310 ~~L~~mvr~~GLKv~vvmSF 329 (537)
++|++.+.++||+|++=+-|
T Consensus 558 K~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccc
Confidence 99999999999999875555
No 95
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=68.06 E-value=11 Score=41.89 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=46.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc-------------chHHHHHHHHHHHcCCcEEEEEeeecc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHEY 332 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD-------------WSgY~~L~~mvr~~GLKv~vvmSFHqC 332 (537)
.-|-+.+.+.|..||++||++|-+.=.+-. +.....|+ ...+++|++.+++.||||++=+-|--|
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 346789999999999999999976444311 10112332 245899999999999999875555444
Q ss_pred C
Q 009335 333 G 333 (537)
Q Consensus 333 G 333 (537)
+
T Consensus 107 s 107 (551)
T PRK10933 107 S 107 (551)
T ss_pred c
Confidence 4
No 96
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=67.49 E-value=82 Score=31.29 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=42.6
Q ss_pred CccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEE
Q 009335 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvm 327 (537)
.+|+.+|.=+..+ +.+ ..+-++.++++|+++|.+... -+|. .....++++.++++||++.+.+
T Consensus 74 ~~Pl~lM~y~n~~-----~~~---~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 74 SVPIILMTYLEDY-----VDS---LDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred CCCEEEEEecchh-----hhC---HHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4677666544321 123 344578889999999999521 0121 2346789999999999999955
Q ss_pred e
Q 009335 328 A 328 (537)
Q Consensus 328 S 328 (537)
+
T Consensus 137 ~ 137 (244)
T PRK13125 137 S 137 (244)
T ss_pred C
Confidence 5
No 97
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.94 E-value=54 Score=33.20 Aligned_cols=78 Identities=15% Similarity=0.042 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhHHhhh
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIG 352 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~e~g 352 (537)
..+|+..+..||+.|.|-+=. .++....+.++.+++.|++|.+-+.. . .-.-|..+.+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~----------~~~~~~~~~i~~ak~~G~~v~~~~~~---------a-~~~~~~~~~~~~ 144 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHK----------HEFDEALPLIKAIKEKGYEVFFNLMA---------I-SGYSDEELLELL 144 (266)
T ss_pred HHHHHHHhcCCcCEEEEeccc----------ccHHHHHHHHHHHHHCCCeEEEEEEe---------e-cCCCHHHHHHHH
Confidence 357888889999999986522 27888999999999999999886651 1 123466766642
Q ss_pred ----ccCCC-eEeeCCCCCcccc
Q 009335 353 ----KGNQD-IFFTDREGRRNTE 370 (537)
Q Consensus 353 ----~~~PD-I~ytDr~G~Rn~E 370 (537)
+.-+| |.+.|-.|.-+++
T Consensus 145 ~~~~~~g~~~i~l~DT~G~~~P~ 167 (266)
T cd07944 145 ELVNEIKPDVFYIVDSFGSMYPE 167 (266)
T ss_pred HHHHhCCCCEEEEecCCCCCCHH
Confidence 22344 6677777766553
No 98
>PLN02433 uroporphyrinogen decarboxylase
Probab=64.65 E-value=16 Score=37.81 Aligned_cols=76 Identities=9% Similarity=0.100 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCCcccccChh
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREF--NLKVQVVMAFHEYGANDSGDAWISLPQW 347 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~--GLKv~vvmSFHqCGGNVGDt~~IpLP~W 347 (537)
.+-++++.++|++.|.+.--|+-+ -+|..|+ |-+.+++++.+++. +..+ ..|.||.. ++-.+
T Consensus 182 ~~~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~----ilh~cG~~-------~~~~~ 248 (345)
T PLN02433 182 IEYVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDVPL----ILYANGSG-------GLLER 248 (345)
T ss_pred HHHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE----EEEeCCCH-------HHHHH
Confidence 344455667999999776657643 2466666 99999999999986 3333 44889831 33345
Q ss_pred HHhhhccCCCeEeeCCC
Q 009335 348 VMEIGKGNQDIFFTDRE 364 (537)
Q Consensus 348 V~e~g~~~PDI~ytDr~ 364 (537)
+. +...|++-.|..
T Consensus 249 ~~---~~~~~~i~~d~~ 262 (345)
T PLN02433 249 LA---GTGVDVIGLDWT 262 (345)
T ss_pred HH---hcCCCEEEcCCC
Confidence 54 334467766655
No 99
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=64.46 E-value=22 Score=39.49 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=49.2
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc-------------chHHHHHHHHHHHcCCcEEEEEeeecc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHEY 332 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD-------------WSgY~~L~~mvr~~GLKv~vvmSFHqC 332 (537)
.-+-+.+.+.|..||++||++|-+.-..-.-+ ....|+ ...+++|++.+++.||||++=+-|.-|
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 34668999999999999999997765432211 122342 356899999999999999987777666
Q ss_pred C
Q 009335 333 G 333 (537)
Q Consensus 333 G 333 (537)
+
T Consensus 101 ~ 101 (543)
T TIGR02403 101 S 101 (543)
T ss_pred c
Confidence 5
No 100
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=64.28 E-value=18 Score=39.16 Aligned_cols=67 Identities=9% Similarity=0.058 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc---cc-------------------hHHHHHHHHHHHcCCcEEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AW-------------------SGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y---DW-------------------SgY~~L~~mvr~~GLKv~v 325 (537)
.++.|.+.|..||.+||++|-|.-.+--........| |+ ..+++|++.+++.||||++
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 3678999999999999999988664322211011222 32 2489999999999999988
Q ss_pred EEeeeccCC
Q 009335 326 VMAFHEYGA 334 (537)
Q Consensus 326 vmSFHqCGG 334 (537)
=+-|--|++
T Consensus 100 D~V~NH~~~ 108 (479)
T PRK09441 100 DVVLNHKAG 108 (479)
T ss_pred EECcccccC
Confidence 777766664
No 101
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.88 E-value=19 Score=35.06 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccC-CCCcccch--HHHHHHHHHHHcCCcEEEE
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKYAWS--GYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~-~p~~YDWS--gY~~L~~mvr~~GLKv~vv 326 (537)
-.|.+.|+.++++|+++|.+.+. +.. .....+|+ ...++.+++++.||+|..+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 36789999999999999999532 210 12234554 3688999999999999875
No 102
>PLN02692 alpha-galactosidase
Probab=63.48 E-value=14 Score=40.52 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=44.9
Q ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCCCcccc------hHHHHHHHHHHHcCCcEEEEE
Q 009335 267 VDPELIRQEISHM-----KALNVDGVIVNCWWGIVEGWNPQKYAW------SGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 267 ~~~~al~~dL~~L-----K~aGVdGV~VDVWWGiVE~~~p~~YDW------SgY~~L~~mvr~~GLKv~vvm 327 (537)
.+++.+.+...+| |++|.+.|.||.-|...+....|..-. +|.+.|++.|++.|||.=...
T Consensus 70 i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~ 141 (412)
T PLN02692 70 IDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYS 141 (412)
T ss_pred cCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEe
Confidence 4677787777754 889999999998665444433333322 689999999999999986643
No 103
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=62.97 E-value=46 Score=33.21 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
++++..++.|++.|++-+....+ .-..++++.+++.|+++++.++
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~----------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA----------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH----------HHHHHHHHHHHHCCCeEEEEEE
Confidence 67888899999999987655432 3578899999999999988664
No 104
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=62.70 E-value=25 Score=38.87 Aligned_cols=65 Identities=11% Similarity=0.205 Sum_probs=48.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC-CCccc-------------chHHHHHHHHHHHcCCcEEEEEeeec
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHE 331 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~-p~~YD-------------WSgY~~L~~mvr~~GLKv~vvmSFHq 331 (537)
.-|-+.|.+.|..||++||++|-+.=.. |... ...|+ ...+++|++.+++.||||++=+-|.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~---~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPFF---QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCCc---CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 3566899999999999999999776432 2211 22332 35789999999999999998777766
Q ss_pred cC
Q 009335 332 YG 333 (537)
Q Consensus 332 CG 333 (537)
|+
T Consensus 101 ~s 102 (539)
T TIGR02456 101 TS 102 (539)
T ss_pred CC
Confidence 65
No 105
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.61 E-value=35 Score=34.97 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=47.9
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
|.+.+++.+.+--+.||++|+..++...|==..-+.+-.-+-..+|+.+.+.+++.||.+.. .+|
T Consensus 35 Csie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t--e~~ 99 (266)
T PRK13398 35 CAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT--EVM 99 (266)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE--eeC
Confidence 55789999999999999999998888876210001011111256899999999999999988 654
No 106
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=62.11 E-value=14 Score=37.71 Aligned_cols=78 Identities=8% Similarity=0.061 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhHH
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~ 349 (537)
.+-++++.++|+++|.+.-=|+.+ -+|.+|+ +-+++++++.+++.|-. .. ..|-|||+ . ++-.++.
T Consensus 180 ~~~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~--ilh~cg~~----~--~~~~~~~ 248 (335)
T cd00717 180 IEYLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPG-VP--VILFAKGA----G--GLLEDLA 248 (335)
T ss_pred HHHHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCC-CC--EEEEcCCC----H--HHHHHHH
Confidence 344555667999999765436543 3466777 99999999999998411 12 24567743 1 4555666
Q ss_pred hhhccCCCeEeeCCC
Q 009335 350 EIGKGNQDIFFTDRE 364 (537)
Q Consensus 350 e~g~~~PDI~ytDr~ 364 (537)
+. ..|++-.|..
T Consensus 249 ~~---~~~~~s~d~~ 260 (335)
T cd00717 249 QL---GADVVGLDWR 260 (335)
T ss_pred hc---CCCEEEeCCC
Confidence 32 3577766655
No 107
>PRK08508 biotin synthase; Provisional
Probab=61.99 E-value=52 Score=33.38 Aligned_cols=54 Identities=17% Similarity=-0.018 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+++.+.+.++.+++.|+..+.+=.-+- .....++.+|.++++.|++.++++.+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~-----~~~~~~~e~~~ei~~~ik~~~p~l~i 93 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGR-----GLDDKKLEYVAEAAKAVKKEVPGLHL 93 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccC-----CCCcccHHHHHHHHHHHHhhCCCcEE
Confidence 4668888888888999998886611121 11234778899999999998776554
No 108
>PRK10658 putative alpha-glucosidase; Provisional
Probab=61.89 E-value=56 Score=37.64 Aligned_cols=86 Identities=15% Similarity=0.334 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCcccch-----HHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCc
Q 009335 268 DPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSGDA 340 (537)
Q Consensus 268 ~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~~~p~~YDWS-----gY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~ 340 (537)
+.+.+.+-++.+++.| +++|.+|+.|.. ...-+.|.|. --+++++.+++.|+|+++++- +
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~-----------P 347 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWIN-----------P 347 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEecc-----------C
Confidence 5677888888888766 578999998852 1111244443 458999999999999988543 3
Q ss_pred ccccChhHHhhhccCCCeEeeCCCCCc
Q 009335 341 WISLPQWVMEIGKGNQDIFFTDREGRR 367 (537)
Q Consensus 341 ~IpLP~WV~e~g~~~PDI~ytDr~G~R 367 (537)
.|..-.-+.+++.+. +.|.++.+|..
T Consensus 348 ~i~~~s~~f~e~~~~-gy~vk~~~G~~ 373 (665)
T PRK10658 348 YIAQKSPLFKEGKEK-GYLLKRPDGSV 373 (665)
T ss_pred CcCCCchHHHHHHHC-CeEEECCCCCE
Confidence 333323444555543 77888888864
No 109
>PRK14706 glycogen branching enzyme; Provisional
Probab=61.88 E-value=19 Score=41.17 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=42.8
Q ss_pred ccCHHHHHHHH-HHHHHcCCCEEEEeeeeeeeccCCCCcccchH-----------------HHHHHHHHHHcCCcEEEEE
Q 009335 266 LVDPELIRQEI-SHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----------------YRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 266 l~~~~al~~dL-~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSg-----------------Y~~L~~mvr~~GLKv~vvm 327 (537)
+-.-..+.+.| ..||++||+.|.+-- +.|- |...+|.+ +++|++.+.++||+|++=+
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 44556677776 789999999988642 3443 44445544 8999999999999998755
Q ss_pred ee
Q 009335 328 AF 329 (537)
Q Consensus 328 SF 329 (537)
-+
T Consensus 238 v~ 239 (639)
T PRK14706 238 VP 239 (639)
T ss_pred cc
Confidence 44
No 110
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=61.58 E-value=46 Score=40.07 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=43.1
Q ss_pred CCccEEEEeecee--ecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 247 PYIPVYVMLANHV--INNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 247 ~~vpVyVMLPLd~--V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
++.||++--=... -...|...+.+.+..+|+.||++|+|.|++- ...+. ..++++|-+.||-|+
T Consensus 330 NGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s---HyP~~-----------~~fydlcDe~GllV~ 395 (1021)
T PRK10340 330 NNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA---HYPND-----------PRFYELCDIYGLFVM 395 (1021)
T ss_pred CCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec---CCCCC-----------HHHHHHHHHCCCEEE
Confidence 5666666432110 0011334578999999999999999999972 22211 256889999999876
Q ss_pred E
Q 009335 325 V 325 (537)
Q Consensus 325 v 325 (537)
.
T Consensus 396 d 396 (1021)
T PRK10340 396 A 396 (1021)
T ss_pred E
Confidence 6
No 111
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=60.97 E-value=12 Score=38.78 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeee-eeccCCCC-cccchHHHHHHHHHHHcCCcEEE--EEeee
Q 009335 273 RQEISHMKALNVDGVIVNCWWG-IVEGWNPQ-KYAWSGYRELFNIIREFNLKVQV--VMAFH 330 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWG-iVE~~~p~-~YDWSgY~~L~~mvr~~GLKv~v--vmSFH 330 (537)
+.+++.||+.+||.|.+|..=- .|=+.-=+ .+.-.-|.+.+..++++|++|++ ++..|
T Consensus 100 E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~ 161 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLD 161 (275)
T ss_pred HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEec
Confidence 6789999999999999997610 00000001 11223499999999999999954 44444
No 112
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=60.63 E-value=17 Score=36.35 Aligned_cols=51 Identities=10% Similarity=0.259 Sum_probs=34.5
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEee
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSF 329 (537)
.-.+.+.+..+|+.||++|+|.|++-. ..+ -.++++++-+.||-|+.=+.+
T Consensus 31 ~a~~~~~~~~d~~l~k~~G~N~iR~~h---~p~-----------~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 31 RAMPDEAMERDLELMKEMGFNAIRTHH---YPP-----------SPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp T---HHHHHHHHHHHHHTT-SEEEETT---S-------------SHHHHHHHHHHT-EEEEE-S-
T ss_pred ccCCHHHHHHHHHHHHhcCcceEEccc---ccC-----------cHHHHHHHhhcCCEEEEeccc
Confidence 345789999999999999999999822 111 256788899999999875544
No 113
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=60.44 E-value=6.9 Score=38.16 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
-.+.+...++|+|.|.+-++|+.+.+ +...+...-..++.+.+++.|||+++-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67788889999999999999998877 556677777788888888889999884
No 114
>PLN02877 alpha-amylase/limit dextrinase
Probab=60.38 E-value=12 Score=44.80 Aligned_cols=59 Identities=14% Similarity=0.364 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCEEEE-eee-eeee-ccC-----------------------------CCCcccchH----------
Q 009335 271 LIRQEISHMKALNVDGVIV-NCW-WGIV-EGW-----------------------------NPQKYAWSG---------- 308 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~V-DVW-WGiV-E~~-----------------------------~p~~YDWSg---------- 308 (537)
+.-.-|+.||++||+.|.+ +|+ .+-| |.. ....|+|.|
T Consensus 374 ~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEg 453 (970)
T PLN02877 374 AGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKG 453 (970)
T ss_pred hHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCc
Confidence 3345688888889999986 666 5544 211 023488976
Q ss_pred --------------HHHHHHHHHHcCCcEEEEEee
Q 009335 309 --------------YRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 309 --------------Y~~L~~mvr~~GLKv~vvmSF 329 (537)
++++++.+.++||+|++=+-|
T Consensus 454 SYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVy 488 (970)
T PLN02877 454 SYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVY 488 (970)
T ss_pred ccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECC
Confidence 899999999999999874444
No 115
>PRK15108 biotin synthase; Provisional
Probab=60.00 E-value=1.4e+02 Score=31.43 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=41.9
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+++.+.+..+.+++.||.-|.+..-|- .|-..++.+|.++++.|++.|+++.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~-----~p~~~~~e~i~~~i~~ik~~~i~v~~ 129 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWK-----NPHERDMPYLEQMVQGVKAMGLETCM 129 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCC-----CCCcchHHHHHHHHHHHHhCCCEEEE
Confidence 4567888888899999999997754451 34455788899999999999987654
No 116
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=58.72 E-value=37 Score=34.04 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=47.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccC---CCCcccchHHHHHHHHHHHcCCcEEEEEeeeccC
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGW---NPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~---~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCG 333 (537)
+.+++.+.+.++.+++.|++.|-+-.=++..-+. ....++-..+.++++.+++.|+++.+ |.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~----H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAA----HAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEE----EeCC
Confidence 4678899999999999999999776534322111 11256778899999999999998765 7554
No 117
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=58.64 E-value=1.2e+02 Score=32.20 Aligned_cols=128 Identities=13% Similarity=0.201 Sum_probs=82.6
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeee--eeeecc----------CCCCcccchHHHHHHHHHHHcCCcEEEE-Eeeec
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNCW--WGIVEG----------WNPQKYAWSGYRELFNIIREFNLKVQVV-MAFHE 331 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDVW--WGiVE~----------~~p~~YDWSgY~~L~~mvr~~GLKv~vv-mSFHq 331 (537)
.+.+++.+++-|+.+|..|+|.|.|||= +|.|== ..-..+ -.-.++|++.+++.||.+++= .+|-
T Consensus 8 ~a~~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~-i~D~~~l~~~l~e~gIY~IARIv~Fk- 85 (316)
T PF13200_consen 8 SAGSPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPY-IKDLKALVKKLKEHGIYPIARIVVFK- 85 (316)
T ss_pred hcCCHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccccc-ccCHHHHHHHHHHCCCEEEEEEEEec-
Confidence 3567889999999999999999999996 664311 111111 255789999999999999763 3442
Q ss_pred cCCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccc--cccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhcc
Q 009335 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNT--ECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAG 409 (537)
Q Consensus 332 CGGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~--EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~~ 409 (537)
|+ ..+ +++||..+....|..-. +-.+ |+|- -.+.-.+|.-.+..+.+.. |
T Consensus 86 ------D~-~la---------~~~pe~av~~~~G~~w~d~~~~~-WvnP--------~~~evw~Y~i~IA~Eaa~~-G-- 137 (316)
T PF13200_consen 86 ------DP-VLA---------EAHPEWAVKTKDGSVWRDNEGEA-WVNP--------YSKEVWDYNIDIAKEAAKL-G-- 137 (316)
T ss_pred ------Ch-HHh---------hhChhhEEECCCCCcccCCCCCc-cCCC--------CCHHHHHHHHHHHHHHHHc-C--
Confidence 22 221 34566555555553211 1112 4443 1678889999999998874 2
Q ss_pred ceeEEEeccCCCccccCCC
Q 009335 410 LICAVEIGLGPSGELKYPS 428 (537)
Q Consensus 410 vI~eI~VGLGPaGELRYPS 428 (537)
+.||+.= =+|||+
T Consensus 138 -FdEIqfD-----YIRFP~ 150 (316)
T PF13200_consen 138 -FDEIQFD-----YIRFPD 150 (316)
T ss_pred -CCEEEee-----eeecCC
Confidence 4566542 358887
No 118
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=58.57 E-value=16 Score=37.70 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhH
Q 009335 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV 348 (537)
+.+-++++.++|+++|.+.-=|+-+ -+|..|+ +-+.++|++.+++.|=. .+ ..|-|||. . ++-.|+
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~--ilh~cg~~----~--~~~~~~ 256 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPD-VP--VILFGKGA----G--ELLEAM 256 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCC-CC--EEEEcCCc----H--HHHHHH
Confidence 3445566677999999765446643 3477776 99999999999998511 12 23667743 1 223345
Q ss_pred HhhhccCCCeEeeCCC
Q 009335 349 MEIGKGNQDIFFTDRE 364 (537)
Q Consensus 349 ~e~g~~~PDI~ytDr~ 364 (537)
. +...|++-.|..
T Consensus 257 ~---~~~~~~is~d~~ 269 (346)
T PRK00115 257 A---ETGADVVGLDWT 269 (346)
T ss_pred H---hcCCCEEeeCCC
Confidence 4 334477766654
No 119
>PRK09989 hypothetical protein; Provisional
Probab=58.30 E-value=22 Score=34.74 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
-+.+.|+.+|++|+++|++..-| .++ -+++.+++++.||++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~---------~~~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPY---------DYS---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc---------cCC---HHHHHHHHHHcCCcEEE
Confidence 57899999999999999994322 233 46788889999999875
No 120
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=57.54 E-value=28 Score=35.81 Aligned_cols=87 Identities=8% Similarity=0.133 Sum_probs=57.0
Q ss_pred ccCHHHHHHHHHHHHHc--CCCEEEEee-eeeeeccCCCCcccch-----HHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 009335 266 LVDPELIRQEISHMKAL--NVDGVIVNC-WWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (537)
Q Consensus 266 l~~~~al~~dL~~LK~a--GVdGV~VDV-WWGiVE~~~p~~YDWS-----gY~~L~~mvr~~GLKv~vvmSFHqCGGNVG 337 (537)
..+.+.+.+-++.+++. -+|+|.+|. ||. ..+-+.|+|. --+++++.+++.|+||++++-=| |.
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~-----v~ 91 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPT-----FG 91 (319)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCC-----cC
Confidence 45778899999999887 678999996 453 1111256555 57899999999999999955311 11
Q ss_pred CCcccccChhHHhhhccCCCeEeeCCCCCc
Q 009335 338 GDAWISLPQWVMEIGKGNQDIFFTDREGRR 367 (537)
Q Consensus 338 Dt~~IpLP~WV~e~g~~~PDI~ytDr~G~R 367 (537)
..-+. .+++++ .+.|+++..|..
T Consensus 92 ----~~~~~--y~e~~~-~g~~v~~~~g~~ 114 (319)
T cd06591 92 ----PETEN--YKEMDE-KGYLIKTDRGPR 114 (319)
T ss_pred ----CCChh--HHHHHH-CCEEEEcCCCCe
Confidence 11122 233333 378888877764
No 121
>PLN00196 alpha-amylase; Provisional
Probab=57.13 E-value=37 Score=37.00 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc------c--------hHHHHHHHHHHHcCCcEEEEEeeeccC
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA------W--------SGYRELFNIIREFNLKVQVVMAFHEYG 333 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD------W--------SgY~~L~~mvr~~GLKv~vvmSFHqCG 333 (537)
..+.|.+.|..||++||+.|-+.-- .|..+...|+ - ..|++|++.+++.||||++=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 5688999999999999999988742 2332333332 2 259999999999999998755554444
No 122
>PLN02960 alpha-amylase
Probab=57.13 E-value=30 Score=41.35 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=44.3
Q ss_pred ccCHHHHH-HHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchH-----------------HHHHHHHHHHcCCcEEEEE
Q 009335 266 LVDPELIR-QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----------------YRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 266 l~~~~al~-~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSg-----------------Y~~L~~mvr~~GLKv~vvm 327 (537)
+-.-+.+. +-|..||++||+.|.+- .+.|- ++...|.+ +++|++.+.++||+|++=+
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34556666 45999999999999874 23442 34444544 8999999999999998744
Q ss_pred eeeccC
Q 009335 328 AFHEYG 333 (537)
Q Consensus 328 SFHqCG 333 (537)
-+--|+
T Consensus 487 V~NH~~ 492 (897)
T PLN02960 487 VHSYAA 492 (897)
T ss_pred cccccC
Confidence 443333
No 123
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.96 E-value=34 Score=34.18 Aligned_cols=71 Identities=14% Similarity=0.305 Sum_probs=53.0
Q ss_pred ccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCcc-------cchHHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 009335 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKY-------AWSGYRELFNIIREFNLKVQVVMAFHEYGAND 336 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~~~p~~Y-------DWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNV 336 (537)
..+.+.+.+-++.+++.| +|+|.+|.+|.. .-+.+ .|.-.+++++.+++.|+|+++++.-
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~----~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P------- 88 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTD----GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDP------- 88 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECccccc----CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeCh-------
Confidence 467788889999998855 679999999873 23333 3556789999999999999996542
Q ss_pred CCCcccccChhHHhhhc
Q 009335 337 SGDAWISLPQWVMEIGK 353 (537)
Q Consensus 337 GDt~~IpLP~WV~e~g~ 353 (537)
.| -.|..+.-+
T Consensus 89 ----~v--~~w~~~~~~ 99 (265)
T cd06589 89 ----YI--REWWAEVVK 99 (265)
T ss_pred ----hH--HHHHHHHHH
Confidence 22 678887544
No 124
>PRK04326 methionine synthase; Provisional
Probab=56.94 E-value=22 Score=36.27 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhH
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV 348 (537)
+.+.+.++.|+++|++.|.||.= |.. .+. +|..+.+.++.+-+ +++..+ ..|-|.||.. |.|=
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~v--~lH~C~G~~~-------~~~~ 224 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAKL--GLHVCYGDYS-------RIAP 224 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCEE--EEEEeCCCcH-------HHHH
Confidence 57788899999999999999974 654 122 34556666666655 455444 6799987752 1121
Q ss_pred HhhhccCCCeEeeCCC
Q 009335 349 MEIGKGNQDIFFTDRE 364 (537)
Q Consensus 349 ~e~g~~~PDI~ytDr~ 364 (537)
...+..-|.+..|-.
T Consensus 225 -~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 225 -YILEFPVDQFDLEFA 239 (330)
T ss_pred -HHHhCCCCEEEEEeC
Confidence 122556677776664
No 125
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=56.91 E-value=46 Score=33.47 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHH-cCCcEEEEEeeeccCC
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIRE-FNLKVQVVMAFHEYGA 334 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~-~GLKv~vvmSFHqCGG 334 (537)
+.+.+.++.|+++|++.|.+|.= |...-. + ..++...++++++.+.+ .|.. + ..|-||+
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~--~--~lHic~~ 211 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGD--V--EVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCc--e--EEEECCC
Confidence 46778889999999999999875 664332 1 35788889999998876 3333 3 5688986
No 126
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=56.69 E-value=61 Score=33.63 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=56.5
Q ss_pred ccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCcccch-----HHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 009335 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~~~p~~YDWS-----gY~~L~~mvr~~GLKv~vvmSFHqCGGNVGD 338 (537)
..+.+.+.+-++.+++.| +|+|.+|+-|.. .-+.|+|. .-+++++.+++.|+|+++++.=|-+ +
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~---~-- 90 (339)
T cd06604 20 YYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK---V-- 90 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee---C--
Confidence 457788889999998876 588888866641 23345444 3689999999999999886542211 0
Q ss_pred CcccccChhHHhhhccCCCeEeeCCCCC
Q 009335 339 DAWISLPQWVMEIGKGNQDIFFTDREGR 366 (537)
Q Consensus 339 t~~IpLP~WV~e~g~~~PDI~ytDr~G~ 366 (537)
++ .-| +.+++++ -+.|.++.+|.
T Consensus 91 ~~--~~~--~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 91 DP--GYD--VYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred CC--CCh--HHHHHHH-CCeEEECCCCC
Confidence 00 012 3334443 37788888774
No 127
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=56.26 E-value=61 Score=39.17 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=43.6
Q ss_pred CCccEEEEeeceee--cCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 247 PYIPVYVMLANHVI--NNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 247 ~~vpVyVMLPLd~V--~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
++.|+++.-=..-= ...+.-.+++.+.++|+.||++|+|.|++ +...+. .++.++|-+.||-|+
T Consensus 346 NGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~---sHyP~~-----------p~fydlcDe~GilV~ 411 (1027)
T PRK09525 346 NGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC---SHYPNH-----------PLWYELCDRYGLYVV 411 (1027)
T ss_pred CCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe---cCCCCC-----------HHHHHHHHHcCCEEE
Confidence 56677654322110 01133468899999999999999999999 222211 355788999999876
Q ss_pred E
Q 009335 325 V 325 (537)
Q Consensus 325 v 325 (537)
.
T Consensus 412 d 412 (1027)
T PRK09525 412 D 412 (1027)
T ss_pred E
Confidence 5
No 128
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=56.17 E-value=36 Score=39.87 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHH----HHHHHcCC--cEEEEEeeeccCCCCCCCccc
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELF----NIIREFNL--KVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~----~mvr~~GL--Kv~vvmSFHqCGGNVGDt~~I 342 (537)
.++++.++.|..+|+..|-||.= |. |...-...+|..|.+.+ ++ -..|+ .+++ .+|-|-||..+ |
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal~--e~~~~~~~~~~~~l~~av~af~~-~~~~v~~~~~I--~~H~C~gnf~~---I 657 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAALR--EGLPLRKSEHAFYLDWAVHSFRI-TNCGVQDTTQI--HTHMCYSNFND---I 657 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcchh--hcCCcCccCHHHHHHHHHHHHHH-HHhcCCCCCEE--EEEEecCCcHH---H
Confidence 46788889999999999999987 63 33222346776666554 33 34456 4454 88999999654 1
Q ss_pred ccChhHHhhhccCCCeEeeCCC
Q 009335 343 SLPQWVMEIGKGNQDIFFTDRE 364 (537)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~ 364 (537)
+|. +.+-+-|.++.|-.
T Consensus 658 -~~~----i~~l~~D~~~~E~~ 674 (766)
T PLN02475 658 -IHS----IIDMDADVITIENS 674 (766)
T ss_pred -HHH----HHhCCCCEEEEEcC
Confidence 221 23667787776543
No 129
>PRK05402 glycogen branching enzyme; Provisional
Probab=55.91 E-value=30 Score=39.86 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=41.8
Q ss_pred cccCHHHHHHHH-HHHHHcCCCEEEEeeeeeeeccCCCCcccch-----------------HHHHHHHHHHHcCCcEEEE
Q 009335 265 QLVDPELIRQEI-SHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 265 ~l~~~~al~~dL-~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWS-----------------gY~~L~~mvr~~GLKv~vv 326 (537)
..-+-+.+.+.| ..||++||++|.+-=- .|. |...+|. .+++|++.+.++||+|++=
T Consensus 260 ~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 260 RFLSYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred cccCHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 344557788785 9999999999976432 121 1111222 3899999999999999885
Q ss_pred Eee
Q 009335 327 MAF 329 (537)
Q Consensus 327 mSF 329 (537)
+-|
T Consensus 335 ~V~ 337 (726)
T PRK05402 335 WVP 337 (726)
T ss_pred ECC
Confidence 555
No 130
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=55.90 E-value=25 Score=35.87 Aligned_cols=86 Identities=20% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCc------ccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccc
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK------YAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWIS 343 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~------YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~Ip 343 (537)
+++.++++.|..+|+..|-||.= .+.+.-.... .+|.-..+.++.+- .+..+.+ ++|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v--~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGEDATV--GVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STTTSEE--EEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCCCCEE--EEEecCccchhhH---
Confidence 57788999999999999999976 2222211111 12322232332221 2455544 8999999854321
Q ss_pred cChhHHhhhccCCCeEeeCCCCCc
Q 009335 344 LPQWVMEIGKGNQDIFFTDREGRR 367 (537)
Q Consensus 344 LP~WV~e~g~~~PDI~ytDr~G~R 367 (537)
....+.+-|.|+.+-...+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2234667788777666655
No 131
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=55.29 E-value=47 Score=35.52 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=71.1
Q ss_pred ccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 249 IPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 249 vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
-|+++..| |.+.+.+.+...-+.||++||..+.-..|==..-+.+-....+.+|+.|.+.+++.||.+.. +
T Consensus 118 ~~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t--~ 188 (360)
T PRK12595 118 NQSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVIS--E 188 (360)
T ss_pred CeeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEE--e
Confidence 34555566 56788999999999999999999987666311111223344568899999999999999988 5
Q ss_pred eeccCCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccccccc-ccccccccc
Q 009335 329 FHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLS-WGVDKERVL 382 (537)
Q Consensus 329 FHqCGGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLS-lg~D~~pvl 382 (537)
.|. +.-+-.. .+..|++-.=-.--+|.+.|. .+--..||+
T Consensus 189 v~d-------------~~~~~~l-~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVi 229 (360)
T PRK12595 189 IVN-------------PADVEVA-LDYVDVIQIGARNMQNFELLKAAGRVNKPVL 229 (360)
T ss_pred eCC-------------HHHHHHH-HHhCCeEEECcccccCHHHHHHHHccCCcEE
Confidence 431 1122211 233676655555555555554 343345664
No 132
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=55.20 E-value=60 Score=32.01 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCEEE-EeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 272 IRQEISHMKALNVDGVI-VNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~-VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
..+.|+.++++||..+. +.+.. ..++.+.++.++.+.+|.+.+.+|
T Consensus 16 ~~~~~~~~~~~g~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 16 RPEVLERAREAGVSAIIIVSTDP-------------EDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp HHHHHHHHHHTTEEEEEEEESSH-------------HHHHHHHHHHHHTTTEEEEEE---
T ss_pred HHHHHHHHHHcCCCEEEEcCCCH-------------HHhHHHHHHHhcCCCeEEEEecCC
Confidence 67788999999998884 22222 345588888888999999999988
No 133
>PRK07094 biotin synthase; Provisional
Probab=55.16 E-value=19 Score=36.51 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCEEEEeee---eeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 273 RQEISHMKALNVDGVIVNCW---WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVW---WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+.|+.||++|++.|.+.+= -.+.+.-.+ ...|..+.+.++.++++|+++..
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~ 183 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGS 183 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecc
Confidence 56788999999999987652 222232223 57889999999999999998755
No 134
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=54.81 E-value=34 Score=33.43 Aligned_cols=52 Identities=10% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
.+...|..+.++|+++|.+ |.+......+..++=...+++-+++++.||++.
T Consensus 11 ~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls 62 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDVS 62 (273)
T ss_pred cHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 4778999999999999998 333222111222333458889999999999853
No 135
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=54.56 E-value=11 Score=38.81 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCEEEE---eee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 273 RQEISHMKALNVDGVIV---NCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~V---DVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
++.|+.||++|++.+.- .+. .-+.+.-.|.+..|..|.+.++.++++||++..
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~ 199 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTA 199 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 78999999999986631 111 111222236677899999999999999999764
No 136
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=53.58 E-value=12 Score=38.81 Aligned_cols=56 Identities=9% Similarity=0.171 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEE---eee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 273 RQEISHMKALNVDGVIV---NCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~V---DVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
++.|+.||+||++.+.. +.+ -.+...-.|++..+..+.+.+++++++||++...|=
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i 200 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIM 200 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEE
Confidence 68899999999998751 222 122222245556677789999999999999876443
No 137
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.51 E-value=1.2e+02 Score=29.44 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeecc----CCCCcccchHHHHHHHHHHHcCCcEEEEEe-eecc
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQVVMA-FHEY 332 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~----~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS-FHqC 332 (537)
..+++.++++|++.|.+-+--...-. ......++....+.++.+++.|+++.+.+. ...|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 67899999999999998875331000 012223677788999999999999998773 4434
No 138
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.33 E-value=36 Score=35.07 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCC--CEEEEeeeeeeeccCCCCcccch-----HHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 009335 269 PELIRQEISHMKALNV--DGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (537)
Q Consensus 269 ~~al~~dL~~LK~aGV--dGV~VDVWWGiVE~~~p~~YDWS-----gY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~ 341 (537)
.+.+.+-++.+++.+| |+|.+|.=|-.-+...-+.|+|. --+++++.+++.|+|+++++- -+=.. +
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~--P~i~~--~--- 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIK--PGLLQ--D--- 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeC--CcccC--C---
Confidence 6778888889988775 77777743432222112335553 378999999999999988543 22110 1
Q ss_pred cccChhHHhhhccCCCeEeeCCCCC
Q 009335 342 ISLPQWVMEIGKGNQDIFFTDREGR 366 (537)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~ 366 (537)
-|. .+++++. +.|.++..|.
T Consensus 101 --~~~--y~e~~~~-g~~v~~~~g~ 120 (317)
T cd06599 101 --HPR--YKELKEA-GAFIKPPDGR 120 (317)
T ss_pred --CHH--HHHHHHC-CcEEEcCCCC
Confidence 122 3444443 6788887765
No 139
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=53.00 E-value=50 Score=39.51 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc-------------cchHHHHHHHHHHHcCCcEEEEEeeeccC
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y-------------DWSgY~~L~~mvr~~GLKv~vvmSFHqCG 333 (537)
+-+.+.+.|..||++||+.|-+.-.+-.... +...| ....++++++.+++.||+|++=+-+.-|+
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4478999999999999999977654422111 12222 34789999999999999998866665555
No 140
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=52.64 E-value=73 Score=37.25 Aligned_cols=118 Identities=13% Similarity=0.053 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHH-HHHHHHHHc--CCc--EEEEEeeeccCCCCCCCcccc
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYR-ELFNIIREF--NLK--VQVVMAFHEYGANDSGDAWIS 343 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~-~L~~mvr~~--GLK--v~vvmSFHqCGGNVGDt~~Ip 343 (537)
.++++.++.|.++|+..|-||.= |..--+ -..-+|..|. ...+.++.+ |++ +++ .+|-|-||.++-
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~--~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I--~~H~C~g~~~~i---- 646 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPALREGLP--LRKSDWPEYLDWAVEAFRLATSGVKDETQI--HTHMCYSEFNEI---- 646 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchhhhcCC--ccchhHHHHHHHHHHHHHHHHhCCCCCCEE--EEEEECCCcHHH----
Confidence 36778889999999999999987 642211 1223555543 333444442 553 454 889999987631
Q ss_pred cChhHHhhhccCCCeEeeCCCCCccccccccc-----ccc--cc-ccCCCcc-hHHHHHHHHHHHH
Q 009335 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLSWG-----VDK--ER-VLNGRTG-IEVYFDFMRSFRT 400 (537)
Q Consensus 344 LP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg-----~D~--~p-vl~GRTp-ie~Y~DFMrSFr~ 400 (537)
=.++. +.+-|.+..|-.. .+.|-|... .++ .+ |..+|++ ++-..+..+.++.
T Consensus 647 -~~~l~---~l~vD~i~lE~~r-~~~e~L~~~~~~~~~~~~ig~GVvD~~s~~ve~~eei~~~i~~ 707 (750)
T TIGR01371 647 -IESIA---DLDADVISIEASR-SDMELLSAFKNGFGYPNGIGPGVYDIHSPRVPSVEEMADLIEK 707 (750)
T ss_pred -HHHHH---hCCCCEEEEEecC-CChhHHHHhhhhcccCCeEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 12333 5666777766332 112333311 111 11 3678888 5555444343333
No 141
>PRK00957 methionine synthase; Provisional
Probab=52.08 E-value=29 Score=35.18 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhH
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV 348 (537)
+++.+.++.|+++|++.|.+|.= |.. +..++....+.++.+.+ ++++.+ ..|-|| | . -|.|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~~v--~lH~CG-~---~----~~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNVPV--AMHVCG-D---V----SNII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCCce--EEEECC-C---c----HHHH-
Confidence 56788889999999999999974 663 12234455555655554 345444 679995 2 2 1212
Q ss_pred HhhhccCCCeEeeCCCCC
Q 009335 349 MEIGKGNQDIFFTDREGR 366 (537)
Q Consensus 349 ~e~g~~~PDI~ytDr~G~ 366 (537)
-...+.+-|.++.|-.+.
T Consensus 206 ~~l~~~~vd~i~ld~~~~ 223 (305)
T PRK00957 206 DDLLKFNVDILDHEFASN 223 (305)
T ss_pred HHHHhCCCCEEEEeecCC
Confidence 112356678888887654
No 142
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=51.30 E-value=1e+02 Score=30.72 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=48.1
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCc--cccc
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDA--WISL 344 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~--~IpL 344 (537)
.+...+.+.|+...+.|++.|.+- ||.-.+ ......-+.++++++.+.+.|+-|++ + .||-|... +++.
T Consensus 86 ~~~~~i~~Ai~~Ai~~gadIIn~S--~g~~~~-~~~~~~~~~l~~ai~~A~~~Gilvva--a----AGN~g~~~~~~~~~ 156 (247)
T cd07491 86 ITPQSAAKAIEAAVEKKVDIISMS--WTIKKP-EDNDNDINELENAIKEALDRGILLFC--S----ASDQGAFTGDTYPP 156 (247)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEee--eecccc-cccccchHHHHHHHHHHHhCCeEEEE--e----cCCCCCcCCCcccC
Confidence 466788999999999999977766 774332 11122357788888888888855554 5 46766554 4556
Q ss_pred Chh
Q 009335 345 PQW 347 (537)
Q Consensus 345 P~W 347 (537)
|.+
T Consensus 157 pa~ 159 (247)
T cd07491 157 PAA 159 (247)
T ss_pred ccc
Confidence 654
No 143
>PRK08445 hypothetical protein; Provisional
Probab=51.28 E-value=19 Score=37.90 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEE---EEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEee
Q 009335 273 RQEISHMKALNVDGV---IVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV---~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSF 329 (537)
++.|+.||+||++.+ .+... -.+.+.-.|..-....|.+.++.++++||++..-|=|
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
Confidence 689999999999954 34433 2233333366666777799999999999999875543
No 144
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=51.06 E-value=37 Score=35.88 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEee-eeeeeccCCCCcccchHHHHH----HH-HHHHcCCcEEEEEeeeccCCCCCCC
Q 009335 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYREL----FN-IIREFNLKVQVVMAFHEYGANDSGD 339 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDV-WWGiVE~~~p~~YDWSgY~~L----~~-mvr~~GLKv~vvmSFHqCGGNVGDt 339 (537)
.++++.++.|+.+||..|-+|. -|+.-.+... |..|.+. ++ .++..|.++++ +.|-|.|+..+.
T Consensus 158 ~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~d~~i--~~HiCy~e~~~~ 227 (330)
T COG0620 158 LALRDEVKDLEDAGIKIIQIDEPALREGLPLRR----DDDYLEWAVEAINLAAAGVGADTQI--HLHICYSEFNDI 227 (330)
T ss_pred HHHHHHHHHHHHcCCCEEeechhhhhcCCcccc----chHHHHHHHHHHHHHHhcCCCCcEE--EEEEECCcccch
Confidence 5788889999999999999999 4886655222 2333332 22 33445778888 889999977665
No 145
>PTZ00445 p36-lilke protein; Provisional
Probab=51.01 E-value=38 Score=34.46 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=47.8
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccch------------HHHHHHHHHHHcCCcEEEE
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS------------GYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWS------------gY~~L~~mvr~~GLKv~vv 326 (537)
.++..+....=.+.||+.||..|.+|.==-+|...+.|-.++. .++.++..++++||+|.+|
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVV 97 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence 4567778888888899999999999975555554444444442 4889999999999999883
No 146
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=50.33 E-value=32 Score=40.07 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=62.2
Q ss_pred cccCCCCCCCC-CCCCccEEEEeeceeecCCCcccCHHHHHHH--HHHHHHcCCCEEEE-eeeeeeeccC---CCCcccc
Q 009335 234 VRAGEHEDDFT-GTPYIPVYVMLANHVINNFCQLVDPELIRQE--ISHMKALNVDGVIV-NCWWGIVEGW---NPQKYAW 306 (537)
Q Consensus 234 ~~~~~~~~~~~-~~~~vpVyVMLPLd~V~~~~~l~~~~al~~d--L~~LK~aGVdGV~V-DVWWGiVE~~---~p~~YDW 306 (537)
|.-.+|.++|+ ..+.||--.--.- .+|.+. |..||++||..|.+ +|+.-.-|+. ..-.|+|
T Consensus 173 vIYE~HVr~fT~~~~~v~~~~rGTy------------~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~W 240 (697)
T COG1523 173 VIYEAHVRDFTQLHPGVPEELRGTY------------LGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNW 240 (697)
T ss_pred EEEEeeecccccCCCCCchhhccce------------ehhccccHHHHHHHhCCceEEEecceEEecccccccccccccc
Confidence 44567888998 7777774322222 233333 99999999999985 7775555542 3567788
Q ss_pred h------------------------HHHHHHHHHHHcCCcEEEEEee-eccCCC
Q 009335 307 S------------------------GYRELFNIIREFNLKVQVVMAF-HEYGAN 335 (537)
Q Consensus 307 S------------------------gY~~L~~mvr~~GLKv~vvmSF-HqCGGN 335 (537)
. .++++++.+.++||-||+=+=| |-+.||
T Consensus 241 GYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~ 294 (697)
T COG1523 241 GYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGN 294 (697)
T ss_pred CCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCccccc
Confidence 4 4788999999999999864444 777666
No 147
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=50.20 E-value=1.3e+02 Score=30.23 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=31.9
Q ss_pred HHHHHH-HHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 274 QEISHM-KALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 274 ~dL~~L-K~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
+-|+.+ +..+||.|-|...... +-....++++.+++.|.||++ |+|
T Consensus 87 ~ll~~~~~~~~~d~vDiE~~~~~---------~~~~~~~l~~~~~~~~~~vI~--S~H 133 (238)
T PRK13575 87 NLLSDLANINGIDMIDIEWQADI---------DIEKHQRLITHLQQYNKEVVI--SHH 133 (238)
T ss_pred HHHHHHHHhCCCCEEEEEcccCC---------ChHHHHHHHHHHHHcCCEEEE--ecC
Confidence 334433 4456899888765421 233588899999999988777 999
No 148
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=49.98 E-value=18 Score=36.82 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCEEE-Ee--ee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEE
Q 009335 272 IRQEISHMKALNVDGVI-VN--CW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~-VD--VW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvm 327 (537)
.++.|+.||+||++.+. +. .. -.+...-.|++..|..+.+.++.+++.||++..-|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeE
Confidence 47889999999998763 11 11 11112223777889999999999999999987643
No 149
>PRK09875 putative hydrolase; Provisional
Probab=49.89 E-value=56 Score=33.91 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=47.9
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 009335 263 FCQLVDPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (537)
Q Consensus 263 ~~~l~~~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~ 341 (537)
+..+.+.+...+.|+.+|++|+..| ||+= .|+ |+ --..|.++.++.|+.|++.=.||. .
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T~~g~------GR----d~~~l~~is~~tgv~Iv~~TG~y~-------~-- 86 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEMTNRYM------GR----NAQFMLDVMRETGINVVACTGYYQ-------D-- 86 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-EecCCCcc------Cc----CHHHHHHHHHHhCCcEEEcCcCCC-------C--
Confidence 4467889999999999999999987 5554 332 21 145677788889999888555552 1
Q ss_pred cccChhHH
Q 009335 342 ISLPQWVM 349 (537)
Q Consensus 342 IpLP~WV~ 349 (537)
.-+|.|+.
T Consensus 87 ~~~p~~~~ 94 (292)
T PRK09875 87 AFFPEHVA 94 (292)
T ss_pred ccCCHHHh
Confidence 13688886
No 150
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=49.60 E-value=1.1e+02 Score=29.08 Aligned_cols=142 Identities=16% Similarity=0.244 Sum_probs=73.9
Q ss_pred CCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCC-CCC------cccccChhHHhhhccC
Q 009335 284 VDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAND-SGD------AWISLPQWVMEIGKGN 355 (537)
Q Consensus 284 VdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNV-GDt------~~IpLP~WV~e~g~~~ 355 (537)
|+|.=++.| |.+ + ++++=+..++.+.++++.|++.++++-. +-++.+ +.+ +..+-+.||...-+
T Consensus 1 itGtF~q~~~~d~-~----~~~~~~~W~~~~~~m~~~GidtlIlq~~-~~~~~~~yps~~~~~~~~~~~~d~l~~~L~-- 72 (166)
T PF14488_consen 1 ITGTFLQPWSWDI-H----QNWTPAQWREEFRAMKAIGIDTLILQWT-GYGGFAFYPSKLSPGGFYMPPVDLLEMILD-- 72 (166)
T ss_pred CceEEEccccchh-h----cCCCHHHHHHHHHHHHHcCCcEEEEEEe-ecCCcccCCccccCccccCCcccHHHHHHH--
Confidence 355666666 655 3 3344456789999999999999987752 112211 111 11223334433211
Q ss_pred CCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhhccceeEEEeccCCCccccCCCCCCCCCc
Q 009335 356 QDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGW 435 (537)
Q Consensus 356 PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGLGPaGELRYPSYp~~~GW 435 (537)
-.|+.|-+- ++.++.|. .=+. .+..+.-.++-+...+++.. +|..||+-.||
T Consensus 73 ----~A~~~Gmkv--~~Gl~~~~-~~w~-~~~~~~~~~~~~~v~~el~~--------------------~yg~h~sf~GW 124 (166)
T PF14488_consen 73 ----AADKYGMKV--FVGLYFDP-DYWD-QGDLDWEAERNKQVADELWQ--------------------RYGHHPSFYGW 124 (166)
T ss_pred ----HHHHcCCEE--EEeCCCCc-hhhh-ccCHHHHHHHHHHHHHHHHH--------------------HHcCCCCCceE
Confidence 134444432 24444332 1122 22233333344445555554 79999988999
Q ss_pred ccCCCccc---ccccHHHHHHHHHHHHHhCC
Q 009335 436 RYPGIGEF---QCYDRYLQQSLRKAAKLRGH 463 (537)
Q Consensus 436 ~~PGiGEF---QCYDky~~a~fr~aAk~kGn 463 (537)
=+|- |+ .=-+.-..+.|.+++++.-+
T Consensus 125 Yip~--E~~~~~~~~~~~~~~l~~~lk~~s~ 153 (166)
T PF14488_consen 125 YIPY--EIDDYNWNAPERFALLGKYLKQISP 153 (166)
T ss_pred EEec--ccCCcccchHHHHHHHHHHHHHhCC
Confidence 8865 21 01134556677777776543
No 151
>PRK09505 malS alpha-amylase; Reviewed
Probab=49.58 E-value=40 Score=39.01 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEee-eeeeec---c--------CCCCcc-------------cchHHHHHHHHHHHcCCc
Q 009335 268 DPELIRQEISHMKALNVDGVIVNC-WWGIVE---G--------WNPQKY-------------AWSGYRELFNIIREFNLK 322 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDV-WWGiVE---~--------~~p~~Y-------------DWSgY~~L~~mvr~~GLK 322 (537)
|.+.|.+.|..||++||++|-|.= +=.+-. . .+...| ....+++|++.+++.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 568899999999999999998642 211100 0 000111 235799999999999999
Q ss_pred EEEEEee
Q 009335 323 VQVVMAF 329 (537)
Q Consensus 323 v~vvmSF 329 (537)
|++=+-|
T Consensus 308 VilD~V~ 314 (683)
T PRK09505 308 ILFDVVM 314 (683)
T ss_pred EEEEECc
Confidence 9875544
No 152
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=49.19 E-value=39 Score=34.45 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=44.2
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc-cc-----hHHHHHHHHHHHcCCc-----EEEEEeeec
Q 009335 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-AW-----SGYRELFNIIREFNLK-----VQVVMAFHE 331 (537)
Q Consensus 263 ~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y-DW-----SgY~~L~~mvr~~GLK-----v~vvmSFHq 331 (537)
+++|..+..++.-.++|+ .|+.+|++|||=|- ...|-.| ++ =.++++++.|++...+ |++.|.-|.
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg~--dgePvV~HG~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc 99 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPIIYHGHTLTSKIKFMDVLKTIKEHAFVTSEYPVILSIENHC 99 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCCcCHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 356777777777777777 89999999999541 1112222 11 2478999999998764 556555563
No 153
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=48.71 E-value=29 Score=33.90 Aligned_cols=43 Identities=12% Similarity=0.022 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
-+++.|+.++++|.++|++. + + .. ...+++.+++++.||++..
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~---~---~---~~---~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFM---F---P---YD---YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEc---C---C---CC---CCHHHHHHHHHHcCCcEEE
Confidence 48889999999999999992 2 1 11 2378888999999999854
No 154
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=48.38 E-value=23 Score=37.85 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe---ee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 268 DPELIRQEISHMKALNVDGVIVN---CW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VD---VW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
.+-.+...+++++++|+++|++. +| |+..+.+ . + .-++++-+++++.||+|..|..
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e--~--~-~~~~~lk~~L~~~GL~v~~v~~ 89 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE--R--D-QIVRRFKKALDETGLKVPMVTT 89 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH--H--H-HHHHHHHHHHHHhCCeEEEeec
Confidence 44567788999999999999864 23 4332210 0 1 1267889999999999877544
No 155
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=48.21 E-value=48 Score=39.06 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=41.8
Q ss_pred ccCHHHH-HHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccc-----------------hHHHHHHHHHHHcCCcEEEEE
Q 009335 266 LVDPELI-RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-----------------SGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 266 l~~~~al-~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDW-----------------SgY~~L~~mvr~~GLKv~vvm 327 (537)
+...+.+ ++.|..||++||+.|.+-- +.|. +....| ..+++|++.+.++||+|++=+
T Consensus 246 ~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 246 VNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4445665 5569999999999998752 2221 111122 348999999999999998744
Q ss_pred ee-ecc
Q 009335 328 AF-HEY 332 (537)
Q Consensus 328 SF-HqC 332 (537)
-+ |.|
T Consensus 321 V~nH~~ 326 (758)
T PLN02447 321 VHSHAS 326 (758)
T ss_pred cccccc
Confidence 44 544
No 156
>PRK12677 xylose isomerase; Provisional
Probab=47.99 E-value=31 Score=36.96 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCEEEEee---e-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEE
Q 009335 271 LIRQEISHMKALNVDGVIVNC---W-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDV---W-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvm 327 (537)
.+.+-++.++++|+++|++.. | |+.-.. ..+ ...+++-+.+++.||+|..|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v~~v~ 87 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVVPMVT 87 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCeeEEEe
Confidence 478889999999999998841 2 332211 111 147889999999999988653
No 157
>PRK04302 triosephosphate isomerase; Provisional
Probab=47.10 E-value=48 Score=32.32 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
..+++||++|+++|.++.. +....+..-.++++.+++.||.+++
T Consensus 76 ~~~~~l~~~G~~~vii~~s--------er~~~~~e~~~~v~~a~~~Gl~~I~ 119 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINHS--------ERRLTLADIEAVVERAKKLGLESVV 119 (223)
T ss_pred hHHHHHHHcCCCEEEEecc--------ccccCHHHHHHHHHHHHHCCCeEEE
Confidence 3488999999999988752 3334455578899999999999885
No 158
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=47.05 E-value=21 Score=37.20 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCEEE---Eeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEE
Q 009335 272 IRQEISHMKALNVDGVI---VNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~---VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvm 327 (537)
.++.|+.||+||++.+- +... --+...-.+++..|..+.+.++.++++||++..-|
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~ 208 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATM 208 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEE
Confidence 46679999999998664 2222 22223333667778889999999999999986643
No 159
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=46.21 E-value=1.6e+02 Score=28.35 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeee--ecc--CCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccc
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGI--VEG--WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWIS 343 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGi--VE~--~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~Ip 343 (537)
+.+.++..+++++..|++.|.+-+-=.. .+. ...-+....-..++++.+++.|+++..-+- +.+-.
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~----------~~~~~ 134 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE----------DASRT 134 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET----------TTGGS
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc----------ccccc
Confidence 4577888899999999999887654111 000 011223356788899999999999955221 22223
Q ss_pred cChhHHhhh----ccCCC-eEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhh
Q 009335 344 LPQWVMEIG----KGNQD-IFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (537)
Q Consensus 344 LP~WV~e~g----~~~PD-I~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~ 404 (537)
-|..+.+.. +..+| |.+.|-.|.-. |.+ +.++.+.+++++.+
T Consensus 135 ~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~------------------P~~-v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 135 DPEELLELAEALAEAGADIIYLADTVGIMT------------------PED-VAELVRALREALPD 181 (237)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEEETTS-S-------------------HHH-HHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHcCCeEEEeeCccCCcC------------------HHH-HHHHHHHHHHhccC
Confidence 455665532 23455 55566665543 343 44777777776653
No 160
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.15 E-value=1.3e+02 Score=30.71 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeecc------CCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEG------WNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~------~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
++++..+++|++.|.+-+- .-|. ...-...+..+.++++.+++.|++|.+.+.
T Consensus 75 ~di~~a~~~g~~~i~i~~~--~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 75 DDARIAVETGVDGVDLVFG--TSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHcCcCEEEEEEe--cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4678888899998887552 1110 012234577788899999999999998665
No 161
>PRK15108 biotin synthase; Provisional
Probab=45.88 E-value=36 Score=35.79 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCEEEEeee--eeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 273 RQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVW--WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
++.|+.||++|+|.+-++.= -+....--+ .-+|....+.++.++++|+++.
T Consensus 136 ~e~l~~LkeAGld~~n~~leT~p~~f~~I~~-~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNLDTSPEFYGNIIT-TRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHHHHHcCCCEEeeccccChHhcCCCCC-CCCHHHHHHHHHHHHHcCCcee
Confidence 67899999999998887542 222222111 1267777888888888999775
No 162
>PRK08508 biotin synthase; Provisional
Probab=45.82 E-value=28 Score=35.25 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCC-------CcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc--cc
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNP-------QKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW--IS 343 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p-------~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~--Ip 343 (537)
++.|+.||++|++.+-++ +|. ++ ...+|....+.++.++++||++..-|=+ | .|++.. +-
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~---G--lGEt~ed~~~ 170 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF---G--LGESWEDRIS 170 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE---e--cCCCHHHHHH
Confidence 678999999999999886 443 22 1357778888889999999988553322 1 455532 33
Q ss_pred cChhHHh
Q 009335 344 LPQWVME 350 (537)
Q Consensus 344 LP~WV~e 350 (537)
+=.|+.+
T Consensus 171 ~l~~lr~ 177 (279)
T PRK08508 171 FLKSLAS 177 (279)
T ss_pred HHHHHHc
Confidence 4456663
No 163
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=45.79 E-value=3.1e+02 Score=28.79 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=77.8
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEee----eeeee--------cc--------CCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNC----WWGIV--------EG--------WNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDV----WWGiV--------E~--------~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
.+...+.|++.|..|...++|...+-. -|-+- +. ...+.|-=+-+++|++.+++.|+.|+
T Consensus 13 ~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 13 HFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 477889999999999999998876544 24321 11 12346777889999999999999999
Q ss_pred EEEee-------------eccCCC---------CC-CCcccccCh---hHHhhhccCCCeEeeCCCCCcccccccccccc
Q 009335 325 VVMAF-------------HEYGAN---------DS-GDAWISLPQ---WVMEIGKGNQDIFFTDREGRRNTECLSWGVDK 378 (537)
Q Consensus 325 vvmSF-------------HqCGGN---------VG-Dt~~IpLP~---WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~ 378 (537)
+-+-+ ..|.+. ++ ++-++..|. .|.+.-++.=++| ..+|+-+|.|+
T Consensus 93 PEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f--------~~~~iHiGgDE 164 (329)
T cd06568 93 PEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALT--------PGPYIHIGGDE 164 (329)
T ss_pred EecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhC--------CCCeEEEeccc
Confidence 95431 112110 00 111122221 1111111111121 24688999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHhh
Q 009335 379 ERVLNGRTGIEVYFDFMRSFRTEFDD 404 (537)
Q Consensus 379 ~pvl~GRTpie~Y~DFMrSFr~~Fa~ 404 (537)
.+. +..+.|..|+....+.+.+
T Consensus 165 ~~~----~~~~~~~~f~~~~~~~v~~ 186 (329)
T cd06568 165 AHS----TPHDDYAYFVNRVRAIVAK 186 (329)
T ss_pred CCC----CchHHHHHHHHHHHHHHHH
Confidence 764 3467888888887777665
No 164
>PLN02784 alpha-amylase
Probab=45.74 E-value=48 Score=39.73 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc---cc----------hHHHHHHHHHHHcCCcEEEEEee-eccCC
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AW----------SGYRELFNIIREFNLKVQVVMAF-HEYGA 334 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y---DW----------SgY~~L~~mvr~~GLKv~vvmSF-HqCGG 334 (537)
++.|.+.|..|+++||++|-+.--. +...+..| || ..+++|++.+++.||+|++=+-| |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~---~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPT---ESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCC---CCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 6899999999999999999887632 22223334 32 35899999999999999763333 77764
No 165
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=45.40 E-value=3.5e+02 Score=27.80 Aligned_cols=131 Identities=12% Similarity=0.191 Sum_probs=80.6
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeee----eee--------ecc-------CCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNCW----WGI--------VEG-------WNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDVW----WGi--------VE~-------~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+...+.|++-|..|...++|.+-+-.= |-+ .+. ...+.|.=.-+++|++.+++.|+.|++
T Consensus 11 ~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 11 HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEE
Confidence 5778899999999999999998755443 432 111 124578889999999999999999999
Q ss_pred EEee--ec-----------cC-------CCCCCCcccccCh---hHHhhhccCCCeEeeCCCCCcccccccccccccccc
Q 009335 326 VMAF--HE-----------YG-------ANDSGDAWISLPQ---WVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVL 382 (537)
Q Consensus 326 vmSF--Hq-----------CG-------GNVGDt~~IpLP~---WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl 382 (537)
-+-+ |. |. +...+.-++.-|. .+.+.-++.-++| ..+|+-+|.|+....
T Consensus 91 EiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf--------~~~~iHiGgDE~~~~ 162 (303)
T cd02742 91 EIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELF--------PDRYLHIGGDEAHFK 162 (303)
T ss_pred eccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhC--------CCCeEEecceecCCC
Confidence 5541 10 00 0000111111221 1111111111222 357889999997543
Q ss_pred CCCcchHHHHHHHHHHHHHHhhh
Q 009335 383 NGRTGIEVYFDFMRSFRTEFDDL 405 (537)
Q Consensus 383 ~GRTpie~Y~DFMrSFr~~Fa~~ 405 (537)
.+..+.|..|+....+...+.
T Consensus 163 --~~~~~l~~~f~~~~~~~v~~~ 183 (303)
T cd02742 163 --QDRKHLMSQFIQRVLDIVKKK 183 (303)
T ss_pred --CCHHHHHHHHHHHHHHHHHHc
Confidence 455778888888777776653
No 166
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=44.94 E-value=22 Score=25.74 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 009335 273 RQEISHMKALNVDGVIVN 290 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VD 290 (537)
.+.++.|=.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345577888999999987
No 167
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=44.90 E-value=1.1e+02 Score=32.99 Aligned_cols=96 Identities=21% Similarity=0.434 Sum_probs=62.2
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEe--------ee------eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeecc
Q 009335 267 VDPELIRQEISHMKALNVDGVIVN--------CW------WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEY 332 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VD--------VW------WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqC 332 (537)
.|+++| .+++|+||...|.+- .| |-+|.. +|++ |- .++|++.+|+.|||+-+..|
T Consensus 81 fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~-~pkr-Di--v~el~~A~rk~Glk~G~Y~S---- 149 (384)
T smart00812 81 FDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDT-GPKR-DL--VGELADAVRKRGLKFGLYHS---- 149 (384)
T ss_pred CCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCC-CCCc-ch--HHHHHHHHHHcCCeEEEEcC----
Confidence 456555 567899999998863 22 555664 4533 44 89999999999999999666
Q ss_pred CCCCCCCcccccChhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhh
Q 009335 333 GANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (537)
Q Consensus 333 GGNVGDt~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~ 407 (537)
+..|- +|+ |.+.. ..+. .....+.|.+|++.+..++.+++.
T Consensus 150 -----------~~DW~------~p~--y~~~~----------~~~~-----~~~~~~~~~~y~~~~~~Ql~ELit 190 (384)
T smart00812 150 -----------LFDWF------NPL--YAGPT----------SSDE-----DPDNWPRFQEFVDDWLPQLRELVT 190 (384)
T ss_pred -----------HHHhC------CCc--ccccc----------cccc-----ccccchhHHHHHHHHHHHHHHHHh
Confidence 34553 333 21110 0010 011245789999888899999886
No 168
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=44.80 E-value=5.6 Score=37.50 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=4.0
Q ss_pred HHHHhHHHHH
Q 009335 73 EKERTKLRER 82 (537)
Q Consensus 73 ere~~~~rer 82 (537)
|||+.+.|++
T Consensus 36 erer~r~r~~ 45 (137)
T PF12868_consen 36 ERERERRRHD 45 (137)
T ss_pred hhcccccccc
Confidence 4444333333
No 169
>PRK12568 glycogen branching enzyme; Provisional
Probab=44.79 E-value=57 Score=38.29 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=41.6
Q ss_pred ccCHHHHHHH-HHHHHHcCCCEEEEeeeeeeeccCCCCcccc-----------------hHHHHHHHHHHHcCCcEEEEE
Q 009335 266 LVDPELIRQE-ISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-----------------SGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 266 l~~~~al~~d-L~~LK~aGVdGV~VDVWWGiVE~~~p~~YDW-----------------SgY~~L~~mvr~~GLKv~vvm 327 (537)
..+.+.+.+. |..||++||+.|.+-= +.|- |..+.| ..++++++.+.++||+|++=+
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmP---i~e~--~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLP---ITEH--PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECc---cccC--CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3456777777 5999999999997642 1121 211222 258999999999999998855
Q ss_pred ee
Q 009335 328 AF 329 (537)
Q Consensus 328 SF 329 (537)
-+
T Consensus 340 V~ 341 (730)
T PRK12568 340 VS 341 (730)
T ss_pred cc
Confidence 55
No 170
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=44.20 E-value=52 Score=33.71 Aligned_cols=49 Identities=8% Similarity=0.090 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
...+++-|+..|++|++.|+|.. +--...-.-..++++++++.|||+.+
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEiS~--------G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEISD--------GSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEEcC--------CccCCCHHHHHHHHHHHHhCCCeEec
Confidence 36888888899999999988742 22223344567789999999999887
No 171
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=44.03 E-value=93 Score=32.94 Aligned_cols=135 Identities=14% Similarity=0.099 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCCEEEEeee--eeeecc--CCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChh
Q 009335 272 IRQEISHMKALNVDGVIVNCW--WGIVEG--WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~VDVW--WGiVE~--~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~W 347 (537)
..+++++++++|++.|.+-+- ...++. .......|.-..+.++.+++.|+++.+.+. +.+-.-|..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e----------da~r~~~~~ 142 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE----------DATRTDIDF 142 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe----------ecCCCCHHH
Confidence 357789999999999887443 222221 112334567788999999999999887443 223334777
Q ss_pred HHhhh----ccCCC-eEeeCCCCCccccccc----ccccc--ccccCCCcchHHHHHHHHHHHHHHhhhhhccceeEEEe
Q 009335 348 VMEIG----KGNQD-IFFTDREGRRNTECLS----WGVDK--ERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEI 416 (537)
Q Consensus 348 V~e~g----~~~PD-I~ytDr~G~Rn~EyLS----lg~D~--~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~V 416 (537)
+.+.. +.-+| |.+.|-.|.-.++-+. .-.+. +|+ -+.+--|+--++...++-+.. | +.-|..
T Consensus 143 l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l-----~~H~Hnd~GlA~AN~laA~~a-G-a~~vd~ 215 (363)
T TIGR02090 143 LIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLPI-----SVHCHNDFGLATANSIAGVKA-G-AEQVHV 215 (363)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceE-----EEEecCCCChHHHHHHHHHHC-C-CCEEEE
Confidence 76642 22234 6777777765443321 00111 111 012233333444555555432 4 467888
Q ss_pred ccCCCcc
Q 009335 417 GLGPSGE 423 (537)
Q Consensus 417 GLGPaGE 423 (537)
.++.-||
T Consensus 216 s~~GlGe 222 (363)
T TIGR02090 216 TVNGIGE 222 (363)
T ss_pred Eeecccc
Confidence 8888887
No 172
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=43.73 E-value=20 Score=42.79 Aligned_cols=17 Identities=53% Similarity=0.786 Sum_probs=7.9
Q ss_pred CCccchhHHHHhHHHHH
Q 009335 66 GKKEREKEKERTKLRER 82 (537)
Q Consensus 66 ~~~~~~~ere~~~~rer 82 (537)
.-++|+|||||.+-|||
T Consensus 321 ~d~srererer~r~RER 337 (1194)
T KOG4246|consen 321 RDKSRERERERERDRER 337 (1194)
T ss_pred cccccchhhhhhhhhhc
Confidence 33444445555444444
No 173
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=42.98 E-value=2.4e+02 Score=28.68 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=89.6
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHH-HcCCcEEEEEeeeccCCCCCCCcccccC
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIR-EFNLKVQVVMAFHEYGANDSGDAWISLP 345 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr-~~GLKv~vvmSFHqCGGNVGDt~~IpLP 345 (537)
...+.+.+.++.||.+|++.|.|- .+++......=.++...++ +.|+.+++-++ |- |...+.|-
T Consensus 12 ~~~~~l~~~~~~l~~~~pd~isvT--------~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt---~r----~~n~~~l~ 76 (272)
T TIGR00676 12 EGEENLWETVDRLSPLDPDFVSVT--------YGAGGSTRDRTVRIVRRIKKETGIPTVPHLT---CI----GATREEIR 76 (272)
T ss_pred hhHHHHHHHHHHHhcCCCCEEEec--------cCCCCCcHHHHHHHHHHHHHhcCCCeeEEee---ec----CCCHHHHH
Confidence 345788889999999999999984 3466556666778888888 56999998555 32 24456688
Q ss_pred hhHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHH---HHHHHHHHHHhhhhhccceeEEEeccCCCc
Q 009335 346 QWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYF---DFMRSFRTEFDDLFVAGLICAVEIGLGPSG 422 (537)
Q Consensus 346 ~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~---DFMrSFr~~Fa~~l~~~vI~eI~VGLGPaG 422 (537)
.|+.... ..|-+|- |-+.-|...... .++...|. +.++.+++... .+.||.+
T Consensus 77 ~~L~~~~----------~~Gi~nv--L~l~GD~~~~~~-~~~~~~f~~a~~Li~~i~~~~~---------~f~ig~a--- 131 (272)
T TIGR00676 77 EILREYR----------ELGIRHI--LALRGDPPKGEG-TPTPGGFNYASELVEFIRNEFG---------DFDIGVA--- 131 (272)
T ss_pred HHHHHHH----------HCCCCEE--EEeCCCCCCCCC-CCCCCCCCCHHHHHHHHHHhcC---------CeeEEEE---
Confidence 8887431 1332222 223333221100 01112222 22333333222 2334433
Q ss_pred cccCCC-CCCCCC---------ccc-CCCccc---ccccHHHHHHHHHHHHHhC
Q 009335 423 ELKYPS-LSERMG---------WRY-PGIGEF---QCYDRYLQQSLRKAAKLRG 462 (537)
Q Consensus 423 ELRYPS-Yp~~~G---------W~~-PGiGEF---QCYDky~~a~fr~aAk~kG 462 (537)
=||. ||.... ++. -|.-.| -|||......|...+++.|
T Consensus 132 --~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g 183 (272)
T TIGR00676 132 --AYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAG 183 (272)
T ss_pred --eCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcC
Confidence 2666 555421 112 566545 3899999999999998886
No 174
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=42.84 E-value=92 Score=37.16 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc-------------cchHHHHHHHHHHHcCCcEEEEEeeeccC
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y-------------DWSgY~~L~~mvr~~GLKv~vvmSFHqCG 333 (537)
+.+.+.+.|..||.+||+.|-+.-.+-.... +...| ....+++|++.+++.||+|++=+-+.-++
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~g-s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPG-STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCC-CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4578999999999999999977665432211 22333 26779999999999999999855554444
No 175
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=42.76 E-value=49 Score=33.95 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---chHHHHHHHHHHHc-CCcEEEEEeeeccCCCCCCCcccccChhHH
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREF-NLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WSgY~~L~~mvr~~-GLKv~vvmSFHqCGGNVGDt~~IpLP~WV~ 349 (537)
+-++++.++|++++.+.--|+-+ -+|.+|+ +-+++++++-+++. |-. +| .|-|||. . ++-.|+.
T Consensus 184 ~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~--~i--lh~cg~~----~--~~~~~~~ 251 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNV--PV--ILFAKGA----G--HLLEELA 251 (338)
T ss_pred HHHHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCC--CE--EEEeCCc----H--HHHHHHH
Confidence 44455667999998865446533 3466666 99999999999987 322 22 3557643 1 3444555
Q ss_pred hhhccCCCeEeeCCC
Q 009335 350 EIGKGNQDIFFTDRE 364 (537)
Q Consensus 350 e~g~~~PDI~ytDr~ 364 (537)
+ ...|++-.|..
T Consensus 252 ~---~~~~~~s~d~~ 263 (338)
T TIGR01464 252 E---TGADVVGLDWT 263 (338)
T ss_pred h---cCCCEEEeCCC
Confidence 3 34577766664
No 176
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=42.64 E-value=47 Score=31.96 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
...+++-|+..+++|.+||.+.. +..... ++...+++.+.+++.||++..+..
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~~------~~~~~~~l~~~l~~~gl~i~~~~~ 66 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFPA------DYKELAELKELLADYGLEITSLAP 66 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCCc------hhhhHHHHHHHHHHcCcEEEeecc
Confidence 46678889999999999999987 222222 333389999999999999977333
No 177
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.40 E-value=2.2e+02 Score=29.83 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=61.3
Q ss_pred CCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
...+|+-+|.=...|- ...+++=++.+|++|||||.|.-- -++ .=+++.+.++++||+.+.
T Consensus 92 ~~~~Pivlm~Y~Npi~-------~~Gie~F~~~~~~~GvdGlivpDL----------P~e--e~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 92 GVKVPIVLMTYYNPIF-------NYGIEKFLRRAKEAGVDGLLVPDL----------PPE--ESDELLKAAEKHGIDPIF 152 (265)
T ss_pred CCCCCEEEEEeccHHH-------HhhHHHHHHHHHHcCCCEEEeCCC----------ChH--HHHHHHHHHHHcCCcEEE
Confidence 3568888887665543 356777899999999999988521 111 234677788899999999
Q ss_pred EEeeeccCCCCCCCcccccChhHHhhhccC-CCeEeeCCCCCc
Q 009335 326 VMAFHEYGANDSGDAWISLPQWVMEIGKGN-QDIFFTDREGRR 367 (537)
Q Consensus 326 vmSFHqCGGNVGDt~~IpLP~WV~e~g~~~-PDI~ytDr~G~R 367 (537)
+.+ ++ .-+.++-.+.+.- .-|+|..+.|..
T Consensus 153 lva-----------Pt-t~~~rl~~i~~~a~GFiY~vs~~GvT 183 (265)
T COG0159 153 LVA-----------PT-TPDERLKKIAEAASGFIYYVSRMGVT 183 (265)
T ss_pred EeC-----------CC-CCHHHHHHHHHhCCCcEEEEeccccc
Confidence 666 11 1235555554433 348888887654
No 178
>PRK06256 biotin synthase; Validated
Probab=42.11 E-value=39 Score=34.52 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCC-------CcccchHHHHHHHHHHHcCCcEEE
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNP-------QKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p-------~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
++.++.||++|++.|.++ +|. .+ ...+|..+.+.++.++++||++..
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~ 205 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCS 205 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 356788999999998774 343 22 234788888999999999998764
No 179
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.97 E-value=75 Score=32.40 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=42.6
Q ss_pred cCHHHHHHHHHHHHHcC--CCEEEEeeeeeee-cc----CCCCcccc-----hHHHHHHHHHHHcCCcEEEEEe
Q 009335 267 VDPELIRQEISHMKALN--VDGVIVNCWWGIV-EG----WNPQKYAW-----SGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aG--VdGV~VDVWWGiV-E~----~~p~~YDW-----SgY~~L~~mvr~~GLKv~vvmS 328 (537)
.+.+.+.+-++.+++.| +|+|.+|+=|... ++ .+=+.|.| -..+++++.+++.|+|+++++-
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 35677888888888766 5899998844321 10 01233444 4578999999999999998553
No 180
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=41.46 E-value=39 Score=34.68 Aligned_cols=66 Identities=14% Similarity=0.052 Sum_probs=44.2
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+|+||-.-.|--+- .-...+++-|+.+|++|++.|+|.. +--...-.-..++++++++.||||..
T Consensus 66 ~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 66 HGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp TT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred cCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEee
Confidence 467777776665443 2267899999999999999999853 22223344577899999999999988
No 181
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=41.43 E-value=2.3e+02 Score=26.74 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
...+.|+.|+++||..+.+--.+ +..++.+.+++++. .++.+.++||
T Consensus 16 ~~~~~l~~~~~~gv~~~v~~~~~------------~~~~~~~~~la~~~-~~i~~~~G~h 62 (251)
T cd01310 16 DRDDVLARAREAGVIKIIVVGTD------------LKSSKRALELAKKY-DNVYAAVGLH 62 (251)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCC------------HHHHHHHHHHHHhC-CCeEEEEeeC
Confidence 34778899999999988776332 12345566667777 6787878888
No 182
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=41.33 E-value=41 Score=39.25 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHH----HHHHHHHHHcCCcEEEEEeeeccCCCCCCCccccc
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGY----RELFNIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY----~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpL 344 (537)
.++++.++.|..+|+..|-||.= |- |.-....-+|..| -+.|+.+-+ |++--..+++|-|=||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal~--e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPALR--EGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchhh--hcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 47788899999999999999987 73 3322334567444 555555554 6643223399999888765 1 3
Q ss_pred ChhHHhhhccCCCeEeeC
Q 009335 345 PQWVMEIGKGNQDIFFTD 362 (537)
Q Consensus 345 P~WV~e~g~~~PDI~ytD 362 (537)
|.- .+-+-|.++.+
T Consensus 654 ~~i----~~l~vD~~~lE 667 (758)
T PRK05222 654 DAI----AALDADVISIE 667 (758)
T ss_pred HHH----HhCCCCEEEEE
Confidence 332 35677877766
No 183
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=41.31 E-value=53 Score=33.51 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=45.3
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeeeeee-eccCCCCcccch---HHHHHHHHHHHcCCc-----EEEEEeee
Q 009335 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGI-VEGWNPQKYAWS---GYRELFNIIREFNLK-----VQVVMAFH 330 (537)
Q Consensus 263 ~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGi-VE~~~p~~YDWS---gY~~L~~mvr~~GLK-----v~vvmSFH 330 (537)
+++|......+.-.++|+. |+-.|++|||=|- -||--=--|.+. .++++++.|++...+ |++.|.-|
T Consensus 23 g~Ql~~~ss~~~y~~aL~~-GcRcvElD~wdg~~~ep~V~HG~t~ts~i~f~dv~~~Ik~~aF~~s~yPvILslE~H 98 (231)
T cd08598 23 GRQLAGDSSVEGYIRALQR-GCRCVEIDVWDGDDGEPVVTHGYTLTSSVPFRDVCRAIKKYAFVTSPYPLILSLEVH 98 (231)
T ss_pred CCccCCccCHHHHHHHHHh-CCcEEEEEeecCCCCCcEEeeCCCCcCceEHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 3566666667777777754 9999999999442 443211123444 478999999998776 56666667
No 184
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=40.93 E-value=69 Score=32.47 Aligned_cols=51 Identities=4% Similarity=-0.027 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
+.+..+.++++....|++.|.|-+-..- +.--.+.++.+++.|+++++.++
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~~----------~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALND----------VRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCCh----------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 4466888999999999999988654332 45688899999999999887444
No 185
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=40.79 E-value=62 Score=33.26 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=45.9
Q ss_pred HHHHHHHHH---HcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCC------CCccc
Q 009335 272 IRQEISHMK---ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS------GDAWI 342 (537)
Q Consensus 272 l~~dL~~LK---~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVG------Dt~~I 342 (537)
++.++..|| ++|++.+..-. -||-..|.++++.++++|+.+-+|.++=-|. |.. .-|-|
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~-----------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~-s~~~~~~~~~~~Gi 214 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQL-----------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPIN-NYASFLRRAKWSKT 214 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccc-----------eecHHHHHHHHHHHHHcCCCCCEEeeccccC-CHHHHHHHHhcCCC
Confidence 444555554 49999776433 4788899999999999988875544422111 000 12447
Q ss_pred ccChhHHhhhcc
Q 009335 343 SLPQWVMEIGKG 354 (537)
Q Consensus 343 pLP~WV~e~g~~ 354 (537)
.+|.||.+.-++
T Consensus 215 ~vP~~l~~~l~~ 226 (281)
T TIGR00677 215 KIPQEIMSRLEP 226 (281)
T ss_pred CCCHHHHHHHHh
Confidence 899999975443
No 186
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=40.63 E-value=48 Score=33.78 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=36.0
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHH----HHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNI----IREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~m----vr~~GLKv~v 325 (537)
...+||++|+++|.|+- ++++=.|..=++++.. +.++||+.++
T Consensus 78 S~~mLkd~G~~~viiGH--------SERR~~f~Etd~~v~~K~~~a~~~gl~pIv 124 (250)
T PRK00042 78 SAEMLKDLGVKYVIIGH--------SERRQYFGETDELVNKKVKAALKAGLTPIL 124 (250)
T ss_pred CHHHHHHCCCCEEEeCc--------ccccCccCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45789999999999974 5666677777888888 9999999988
No 187
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=39.84 E-value=50 Score=34.20 Aligned_cols=64 Identities=22% Similarity=0.429 Sum_probs=43.4
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeee-eeccCCCCcc-cch-----HHHHHHHHHHHcCCc-----EEEEEeeec
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWG-IVEGWNPQKY-AWS-----GYRELFNIIREFNLK-----VQVVMAFHE 331 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWG-iVE~~~p~~Y-DWS-----gY~~L~~mvr~~GLK-----v~vvmSFHq 331 (537)
++|.-...++.-.++|+ .|+..|++|||=| .-| |-.| ++. .++++++.|++...+ |++.|.-|.
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcR~vElD~w~g~~ge---pvV~Hg~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc 99 (260)
T cd08597 24 DQLRGPSSVEGYVRALQ-RGCRCVELDCWDGPNGE---PVIYHGHTLTSKISFRSVIEAINEYAFVASEYPLILCIENHC 99 (260)
T ss_pred CeecCccCHHHHHHHHH-hCCCEEEEEeEcCCCCC---EEEEeCCccccceEHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 45666666666677775 8999999999943 122 2222 233 589999999998776 566666663
No 188
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=39.61 E-value=72 Score=34.03 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
-..+.+|.+|.|+|.+-|||+-=+...-..-......++.+.+++.||-+.+-
T Consensus 110 ~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 34566899999999999999932221014567777999999999999998873
No 189
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=39.47 E-value=89 Score=33.15 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=65.4
Q ss_pred eecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 009335 259 VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 259 ~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGD 338 (537)
+|...+.+...+.++..++.|+..|.+.|--.+=|...+.-... +=+-..+|.++..+-..|++.-+. | |.
T Consensus 15 iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~Il~~r----G---Gy 85 (313)
T COG1619 15 IIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKAILCVR----G---GY 85 (313)
T ss_pred EEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeEEEEcc----c---CC
Confidence 33333444578999999999999999888877766544431111 123467888888888888877333 4 34
Q ss_pred CcccccChhHHhhhccCCCeEe
Q 009335 339 DAWISLPQWVMEIGKGNQDIFF 360 (537)
Q Consensus 339 t~~IpLP~WV~e~g~~~PDI~y 360 (537)
.++==||-|-.+..+++|-||+
T Consensus 86 gs~rlLp~ld~~~i~~~pKifi 107 (313)
T COG1619 86 GSNRLLPYLDYDLIRNHPKIFI 107 (313)
T ss_pred ChhhhhhhcchHHHhcCCceEE
Confidence 6665699999988899998874
No 190
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.35 E-value=88 Score=32.29 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=45.7
Q ss_pred ccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeecc--CCCCcccc-----hHHHHHHHHHHHcCCcEEEEEe
Q 009335 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEG--WNPQKYAW-----SGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~--~~p~~YDW-----SgY~~L~~mvr~~GLKv~vvmS 328 (537)
..+.+.+.+-++.+++.| +|+|.+|.-|-.... ..-+.|+| .--+++++.+++.|+||++++-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 456788888899998876 589999975543221 11234544 3578999999999999999765
No 191
>PRK09936 hypothetical protein; Provisional
Probab=39.10 E-value=61 Score=34.41 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccch----HHHHHHHHHHHcCCcEEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWS----GYRELFNIIREFNLKVQV 325 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWS----gY~~L~~mvr~~GLKv~v 325 (537)
.+..|+.-|+++|.+|++-+.|--- ||-- ||. +..++++.++++||||++
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQWt~yG~~--------~fg~~~g~La~~l~~A~~~Gl~v~v 90 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQWTRYGDA--------DFGGQRGWLAKRLAAAQQAGLKLVV 90 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeeccCC--------CcccchHHHHHHHHHHHHcCCEEEE
Confidence 5789999999999999999987522 4321 443 478899999999999999
No 192
>PLN03231 putative alpha-galactosidase; Provisional
Probab=38.95 E-value=46 Score=35.86 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=39.8
Q ss_pred CHHHHHHHH----HHHHHcCCCEEEEeeeeeeecc----------------CCCCcc-----cch------HHHHHHHHH
Q 009335 268 DPELIRQEI----SHMKALNVDGVIVNCWWGIVEG----------------WNPQKY-----AWS------GYRELFNII 316 (537)
Q Consensus 268 ~~~al~~dL----~~LK~aGVdGV~VDVWWGiVE~----------------~~p~~Y-----DWS------gY~~L~~mv 316 (537)
+++.+++.. +-||.+|-+.|.||.-|-.-+. ..-|+. -|- |.+.|++.|
T Consensus 16 ~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyv 95 (357)
T PLN03231 16 SEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKV 95 (357)
T ss_pred CHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHH
Confidence 455555554 3678999999999988753321 111222 232 899999999
Q ss_pred HHcCCcEEE
Q 009335 317 REFNLKVQV 325 (537)
Q Consensus 317 r~~GLKv~v 325 (537)
++.|||+=+
T Consensus 96 Hs~GLKfGI 104 (357)
T PLN03231 96 HALGLKLGI 104 (357)
T ss_pred HhCCcceEE
Confidence 999999855
No 193
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=38.87 E-value=54 Score=37.91 Aligned_cols=63 Identities=16% Similarity=0.330 Sum_probs=40.9
Q ss_pred HHHHH--HHHHHHHcCCCEEEEe-e----------------eeeeecc---CCCCcc----cchHHHHHHHHHHHcCCcE
Q 009335 270 ELIRQ--EISHMKALNVDGVIVN-C----------------WWGIVEG---WNPQKY----AWSGYRELFNIIREFNLKV 323 (537)
Q Consensus 270 ~al~~--dL~~LK~aGVdGV~VD-V----------------WWGiVE~---~~p~~Y----DWSgY~~L~~mvr~~GLKv 323 (537)
..|.+ .|..||++||+.|.+- | +||.-=. .-+..| .-..+++|++.++++||+|
T Consensus 182 ~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 182 AGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred HHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 45544 4999999999999763 2 2441000 001122 2346999999999999999
Q ss_pred EEEEee-ecc
Q 009335 324 QVVMAF-HEY 332 (537)
Q Consensus 324 ~vvmSF-HqC 332 (537)
++=+-| |-+
T Consensus 262 IlDvV~NHt~ 271 (688)
T TIGR02100 262 ILDVVYNHTA 271 (688)
T ss_pred EEEECcCCcc
Confidence 876655 544
No 194
>PRK07360 FO synthase subunit 2; Reviewed
Probab=38.69 E-value=45 Score=35.20 Aligned_cols=57 Identities=12% Similarity=0.122 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCCEEEE--e-ee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 272 IRQEISHMKALNVDGVIV--N-CW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~V--D-VW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
.++.|+.||+||++.+-- . .+ -.+-+.-.|++-.+..|.+.++++++.||++..-|=
T Consensus 162 ~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i 222 (371)
T PRK07360 162 YEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMM 222 (371)
T ss_pred HHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEE
Confidence 367899999999999830 0 00 000001137777888889999999999999966444
No 195
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=38.12 E-value=89 Score=32.30 Aligned_cols=59 Identities=12% Similarity=0.290 Sum_probs=44.4
Q ss_pred ccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCcccch-----HHHHHHHHHHHcCCcEEEEEe
Q 009335 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~~~p~~YDWS-----gY~~L~~mvr~~GLKv~vvmS 328 (537)
..+.+.+.+-++.+++.+ +|+|.+|+=|. . .-+.|+|. -.+++++.+++.|+||++++-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~ 85 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVD 85 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEee
Confidence 457788888899998866 58888886553 1 23455553 478899999999999998665
No 196
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=37.90 E-value=98 Score=28.00 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHH---cCCcEEEEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIRE---FNLKVQVVM 327 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~---~GLKv~vvm 327 (537)
..+...+..+..+++|+|+|++..-++..-. + ++....+.+..+.+ .++.+.+..
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~-~----~~~~~~~~~~~i~~~~~~~~pv~iy~ 120 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSLKE-G----DWEEVLEEIAAVVEAADGGLPLKVIL 120 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHHhC-C----CHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3577778889999999999999766542211 1 23444444444444 477776643
No 197
>PRK06233 hypothetical protein; Provisional
Probab=37.70 E-value=69 Score=34.05 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeee-ccCC---CCcccchHHHH-------HHHHHHHcCCcEEEEEeeeccCCCCC
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIV-EGWN---PQKYAWSGYRE-------LFNIIREFNLKVQVVMAFHEYGANDS 337 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiV-E~~~---p~~YDWSgY~~-------L~~mvr~~GLKv~vvmSFHqCGGNVG 337 (537)
+++++.+++|..+|+..|-||.= |+.. +... ..--.+..|.+ +++.+-+ |+.--+.+++|-|-||-.
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~-~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALA-DLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCcCCEEEEEeeCCCCC
Confidence 46788889999999999999986 7642 2100 00002333333 3333332 553333349999988864
Q ss_pred CCcccc--cChhHHhhhccCCCeEeeCCCCCc
Q 009335 338 GDAWIS--LPQWVMEIGKGNQDIFFTDREGRR 367 (537)
Q Consensus 338 Dt~~Ip--LP~WV~e~g~~~PDI~ytDr~G~R 367 (537)
.+.... .-.=+-...+.+-|.|+.+-...|
T Consensus 250 ~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r 281 (372)
T PRK06233 250 STYLFSGGYEPVAKYLGQLNYDGFFLEYDNDR 281 (372)
T ss_pred CcccccCcHHHHHHHHHhCCCCEEEEecCCCc
Confidence 221111 000011123567787777655444
No 198
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=37.13 E-value=86 Score=34.56 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSF 329 (537)
..+.++.++++..++||+.|.|-+-...++ -..+.++.+++.|+++++.+|+
T Consensus 94 pddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 94 ADDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 446788899999999999988877644332 3788999999999999887763
No 199
>PRK03705 glycogen debranching enzyme; Provisional
Probab=37.11 E-value=44 Score=38.42 Aligned_cols=51 Identities=20% Similarity=0.479 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCEEEEe-e----------------eeee-------eccCCCCcccc------hHHHHHHHHHHHcCCcEE
Q 009335 275 EISHMKALNVDGVIVN-C----------------WWGI-------VEGWNPQKYAW------SGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 275 dL~~LK~aGVdGV~VD-V----------------WWGi-------VE~~~p~~YDW------SgY~~L~~mvr~~GLKv~ 324 (537)
.|..||++||+.|.+- | .||. +|+ .|-= ..+++|++.+.++||+|+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~----~ygt~~~~~~~efk~LV~~~H~~GI~VI 259 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP----AYASGPETALDEFRDAVKALHKAGIEVI 259 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc----ccCCCCcchHHHHHHHHHHHHHCCCEEE
Confidence 4999999999999762 2 2431 221 1110 259999999999999998
Q ss_pred EEEee
Q 009335 325 VVMAF 329 (537)
Q Consensus 325 vvmSF 329 (537)
+=+-|
T Consensus 260 lDvV~ 264 (658)
T PRK03705 260 LDVVF 264 (658)
T ss_pred EEEcc
Confidence 86666
No 200
>PLN02389 biotin synthase
Probab=37.03 E-value=3.9e+02 Score=28.87 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=40.7
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
.+++.+.+..+.+++.|+..+.+-..|-..- .....|.+|.+++..+++.||.+.
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~---~e~~~~e~i~eiir~ik~~~l~i~ 170 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTV---GRKTNFNQILEYVKEIRGMGMEVC 170 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCC---CChhHHHHHHHHHHHHhcCCcEEE
Confidence 4678888899999999999988765563211 111257789999999998887754
No 201
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=36.55 E-value=61 Score=38.43 Aligned_cols=48 Identities=19% Similarity=0.348 Sum_probs=35.1
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
+.+.+++++..+|+.||++|+|.|++- +.-|. .+..++|-+.||-|+-
T Consensus 315 G~~~~~~~~~~dl~lmk~~n~N~vRts---HyP~~-----------~~~ydLcDelGllV~~ 362 (808)
T COG3250 315 GRVTDEDAMERDLKLMKEANMNSVRTS---HYPNS-----------EEFYDLCDELGLLVID 362 (808)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEec---CCCCC-----------HHHHHHHHHhCcEEEE
Confidence 567799999999999999999999975 44333 2344556666666644
No 202
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=36.46 E-value=67 Score=30.58 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=37.9
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc------cchHHHHHHHHHHHc
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY------AWSGYRELFNIIREF 319 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y------DWSgY~~L~~mvr~~ 319 (537)
.+++.+.+..+.++++|+|+|.|.+---.... ..+.| ++....++++.+++.
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~-~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKV-TKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHH-hCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999875422111 11223 677788888888764
No 203
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.12 E-value=1.1e+02 Score=32.08 Aligned_cols=63 Identities=11% Similarity=0.297 Sum_probs=42.0
Q ss_pred ccCHHHHHHHHHHHHHcCC--CEEEEeee--------eee---eccCC--C---Cccc------chHHHHHHHHHHHcCC
Q 009335 266 LVDPELIRQEISHMKALNV--DGVIVNCW--------WGI---VEGWN--P---QKYA------WSGYRELFNIIREFNL 321 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGV--dGV~VDVW--------WGi---VE~~~--p---~~YD------WSgY~~L~~mvr~~GL 321 (537)
..+.+.+.+-++.+++.|| ++|.||.| |.. ++..+ + +.++ |--.+++++.+++.|+
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 4577889999999999885 78888842 111 11001 1 1122 2347899999999999
Q ss_pred cEEEEEe
Q 009335 322 KVQVVMA 328 (537)
Q Consensus 322 Kv~vvmS 328 (537)
|+++++.
T Consensus 100 kv~l~v~ 106 (340)
T cd06597 100 KVLLWQI 106 (340)
T ss_pred EEEEEec
Confidence 9987544
No 204
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=36.09 E-value=58 Score=31.55 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=43.5
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+...+..+++.+..+|+++|.+-+.++..+ ..+......++.+.+++.|+++++
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3456677788899999999998888887432 355666788888888999999877
No 205
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=36.08 E-value=72 Score=33.93 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeee-ccC-----CCCccc----chHHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIV-EGW-----NPQKYA----WSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiV-E~~-----~p~~YD----WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVG 337 (537)
+++++.++.|.++|+..|-||.= |+.. ... .....+ =..|.++++.+-+ |+.--+.+++|-|-||-.
T Consensus 170 ~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~-~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 170 KTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALA-GKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEeecCCCC
Confidence 57788889999999999999987 8742 110 011111 1124455555443 664334459999988864
No 206
>PTZ00413 lipoate synthase; Provisional
Probab=35.75 E-value=3e+02 Score=30.50 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=73.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeee-eccCCCCcccchHHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCCccc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGI-VEGWNPQKYAWSGYRELFNIIREF--NLKVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGi-VE~~~p~~YDWSgY~~L~~mvr~~--GLKv~vvmSFHqCGGNVGDt~~I 342 (537)
+.|++.+.+.-++.+++|+.-|.|--.|.. +. .-..+-+.+.++.|++. +++|.+.+. |- ..
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~-----D~ga~~~a~~I~~Ir~~~p~~~Ievlig---------Df-~g 240 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLP-----DGGASHVARCVELIKESNPELLLEALVG---------DF-HG 240 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCC-----hhhHHHHHHHHHHHHccCCCCeEEEcCC---------cc-cc
Confidence 457888999999999999988877666651 22 13678899999999985 677777322 10 00
Q ss_pred ccChhHHhhhccCCCeEeeCCCCCccccccc-cccccccccCCCcchHHHHHHHHHHHHHHhhhhhcccee--EEEeccC
Q 009335 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLS-WGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLIC--AVEIGLG 419 (537)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLS-lg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~--eI~VGLG 419 (537)
-...+....+.-||++ +.|-|..- |. .+ . |++--.|.+.++-++..-.-| ..++.+ .|-||||
T Consensus 241 -~~e~l~~L~eAG~dvy------nHNLETv~rLy-p~---V--Rt~~atYe~sLe~Lr~AKe~f-~~gi~tcSGiIVGLG 306 (398)
T PTZ00413 241 -DLKSVEKLANSPLSVY------AHNIECVERIT-PY---V--RDRRASYRQSLKVLEHVKEFT-NGAMLTKSSIMLGLG 306 (398)
T ss_pred -CHHHHHHHHhcCCCEE------ecccccCHhHH-HH---H--ccCcCCHHHHHHHHHHHHHHh-cCCceEeeeeEecCC
Confidence 1245555567788888 44555531 22 11 1 222225666666665432221 223433 5666665
No 207
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=35.73 E-value=2.5e+02 Score=29.22 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCC-EEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc--cccChhHHh
Q 009335 274 QEISHMKALNVD-GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW--ISLPQWVME 350 (537)
Q Consensus 274 ~dL~~LK~aGVd-GV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~--IpLP~WV~e 350 (537)
+-++.|+++|+. .|. ++...+... +....+-++.++++|+.+..-.-+. . .|.|+.. ..|=.|+.+
T Consensus 188 ell~~L~~~g~~v~i~-------l~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl--~-gvNd~~~~l~~l~~~l~~ 256 (321)
T TIGR03822 188 ALIAALKTSGKTVYVA-------LHANHAREL-TAEARAACARLIDAGIPMVSQSVLL--R-GVNDDPETLAALMRAFVE 256 (321)
T ss_pred HHHHHHHHcCCcEEEE-------ecCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeEe--C-CCCCCHHHHHHHHHHHHh
Confidence 445678888854 233 333334433 5778899999999999885522221 2 2566643 344566664
Q ss_pred hhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHHHHHHhhhhh
Q 009335 351 IGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (537)
Q Consensus 351 ~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~l~ 407 (537)
.+-.---++..|..+.... | |.+.+.+.++|+..+.....|.-
T Consensus 257 ~gv~pyyl~~~~p~~g~~~------------f--~~~~~~~~~i~~~l~~~~~g~~~ 299 (321)
T TIGR03822 257 CRIKPYYLHHLDLAPGTAH------------F--RVTIEEGQALVRALRGRISGLAQ 299 (321)
T ss_pred cCCeeEEEEecCCCCCccc------------c--cCcHHHHHHHHHHHHHhCCCCcc
Confidence 4322112344444432211 2 57899999999999998887754
No 208
>PRK14705 glycogen branching enzyme; Provisional
Probab=35.51 E-value=73 Score=39.52 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=37.3
Q ss_pred HHHHHH-HHHHHHcCCCEEEEeeeeeeeccCCCCcccch-----------------HHHHHHHHHHHcCCcEEEE
Q 009335 270 ELIRQE-ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 270 ~al~~d-L~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWS-----------------gY~~L~~mvr~~GLKv~vv 326 (537)
+.+... |..||++||+.|.+-= +.|- |..+.|. .++++++.+.++||+|++=
T Consensus 765 ~~l~~~lldYlk~LGvt~IeLmP---v~e~--p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 765 RELAKELVDYVKWLGFTHVEFMP---VAEH--PFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHHHHHHHHhCCCEEEECc---cccC--CCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 455555 6999999999997532 2232 3334443 3899999999999999873
No 209
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=35.01 E-value=84 Score=33.25 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=41.1
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeee--eeeeccCCCCcccchHHHHHHHHHHHcCC
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNL 321 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVW--WGiVE~~~p~~YDWSgY~~L~~mvr~~GL 321 (537)
.+++-+.---++.+.+|.||+|+.|. =...=..++++.++..|+++++.++..+.
T Consensus 226 Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 226 GRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred cchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 34444455556668999999999998 22222357999999999999999987653
No 210
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=34.91 E-value=1.4e+02 Score=27.60 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=41.1
Q ss_pred CCccEEEEeeceeecCCC-cccCH---H-HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHc
Q 009335 247 PYIPVYVMLANHVINNFC-QLVDP---E-LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (537)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~-~l~~~---~-al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~ 319 (537)
++++|.+++--..-.... -+.++ + -+++-++.+++.|.|||.||.-|...+.. -++..|.++++.+++.
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSA 136 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHH
Confidence 567776666543221100 02222 2 34455667789999999999655433321 2477788888888875
No 211
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=34.73 E-value=90 Score=32.48 Aligned_cols=64 Identities=22% Similarity=0.437 Sum_probs=44.2
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc-ch-----HHHHHHHHHHHcCCc-----EEEEEeee
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-WS-----GYRELFNIIREFNLK-----VQVVMAFH 330 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD-WS-----gY~~L~~mvr~~GLK-----v~vvmSFH 330 (537)
++|.-....+.-.++|+ .|+-.|++|||=| +...|-.|. |. .++++++.|++..++ |++.|--|
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~S~yPvIlsLE~H 98 (258)
T cd08629 24 DQLTGPSSTEAYIRALC-KGCRCLELDCWDG--PNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENH 98 (258)
T ss_pred CccCCccCHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCCCccCcCHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 45666666677777777 7999999999976 222233332 12 588999999998776 56655555
No 212
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=34.60 E-value=63 Score=33.96 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCC---CC------
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS---GD------ 339 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVG---Dt------ 339 (537)
+++++.++.|..+|+..|-+|.= |...= .. .=..|.++++.+-+ |+...+ +.|-|-||-+ .+
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~~----~~-~~~~~v~~~n~~~~-g~~~~v--~~HvC~G~~~~~~~~~~~~~~ 227 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVFF----DE-VNDWGVAALERAIE-GLKCET--AVHICYGYGIKANTDWKKTLG 227 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhhh----HH-HHHHHHHHHHHHHc-CCCCce--EEEEeCCCCCCCccccccccc
Confidence 46788889999999999999977 77311 00 13446666766664 677665 6799987864 11
Q ss_pred ------cccccChhHHhhhccCCCeEeeCCCCCcc-cccccccccccc---ccCCCcc-hHHHHHHHHHHHHH
Q 009335 340 ------AWISLPQWVMEIGKGNQDIFFTDREGRRN-TECLSWGVDKER---VLNGRTG-IEVYFDFMRSFRTE 401 (537)
Q Consensus 340 ------~~IpLP~WV~e~g~~~PDI~ytDr~G~Rn-~EyLSlg~D~~p---vl~GRTp-ie~Y~DFMrSFr~~ 401 (537)
..| +|.- .+-+-|.|+.+-...|. .|-|.+..|+.= |..-|++ +|--.+-.+.+++.
T Consensus 228 ~~~g~y~~i-~~~l----~~~~vd~~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a 295 (339)
T PRK09121 228 SEWRQYEEA-FPKL----QKSNIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKA 295 (339)
T ss_pred cccccHHHH-HHHH----HhCCCCEEEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHH
Confidence 011 2332 25677888776554442 233333334311 1355666 55555555554443
No 213
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=34.50 E-value=88 Score=32.42 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=47.2
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc---cch---HHHHHHHHHHHcCCc-----EEEEEeeec
Q 009335 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK-----VQVVMAFHE 331 (537)
Q Consensus 263 ~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y---DWS---gY~~L~~mvr~~GLK-----v~vvmSFHq 331 (537)
+++|.-+...+.-+++|+ .|+-.|++|||=|.-....|-.| .+. .++++++.|++..++ |++.|--|.
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~eP~v~Hg~t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc 101 (258)
T cd08625 23 AGQLTGLSSVEMYRQVLL-TGCRCIELDCWKGRPPEEEPFITHGFTMTTEIPFKDVIEAIAESAFKTSPYPVILSFENHV 101 (258)
T ss_pred CCccCCccCHHHHHHHHH-cCCCEEEEEecCCCCCCCCCEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEehhcC
Confidence 356777777888888885 79999999999663211123333 222 378999999997766 677666674
No 214
>PRK15452 putative protease; Provisional
Probab=34.12 E-value=44 Score=36.75 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=0.0
Q ss_pred CccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEE
Q 009335 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV 289 (537)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~V 289 (537)
+++|||.+| ++..+..+ +.+...|+.|+++|||||.|
T Consensus 59 g~kvyvt~n--~i~~e~el---~~~~~~l~~l~~~gvDgvIV 95 (443)
T PRK15452 59 GKKFYVVVN--IAPHNAKL---KTFIRDLEPVIAMKPDALIM 95 (443)
T ss_pred CCEEEEEec--CcCCHHHH---HHHHHHHHHHHhCCCCEEEE
No 215
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=34.12 E-value=1.6e+02 Score=26.57 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhH---Hh
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV---ME 350 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV---~e 350 (537)
+-...|+.+|++.+++..=|-.+....+. ...+.++++.+++.|.++.+ ++......|. ..
T Consensus 41 n~a~~l~~LG~~~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~~~~~~v~~-------------D~~~~~~~~~~~~~~ 104 (196)
T cd00287 41 NVAVALARLGVSVTLVGADAVVISGLSPA---PEAVLDALEEARRRGVPVVL-------------DPGPRAVRLDGEELE 104 (196)
T ss_pred HHHHHHHHCCCcEEEEEccEEEEecccCc---HHHHHHHHHHHHHcCCeEEE-------------eCCccccccccchHH
Confidence 45567788899988888557777664444 56799999999999988766 3333333443 11
Q ss_pred hhccCCCeEeeCCC
Q 009335 351 IGKGNQDIFFTDRE 364 (537)
Q Consensus 351 ~g~~~PDI~ytDr~ 364 (537)
....++|+++.++.
T Consensus 105 ~~~~~~dvl~~n~~ 118 (196)
T cd00287 105 KLLPGVDILTPNEE 118 (196)
T ss_pred HHHhhCCEECCCHH
Confidence 22456788766654
No 216
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=34.04 E-value=2e+02 Score=28.71 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeecc----CCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~----~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.++++..+.+|++.|.+-+-....-. ......-+..+.++++.+++.|+++.+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 45567788999999888774331100 011122356788899999999998764
No 217
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=34.04 E-value=73 Score=32.63 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=44.8
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeeeeee-eccCCCCcccch---HHHHHHHHHHHcCCc-----EEEEEeeec
Q 009335 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGI-VEGWNPQKYAWS---GYRELFNIIREFNLK-----VQVVMAFHE 331 (537)
Q Consensus 263 ~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGi-VE~~~p~~YDWS---gY~~L~~mvr~~GLK-----v~vvmSFHq 331 (537)
+++|..+..++.-.++|+ .|+..|++|||=|- =|+--=--+.+. .++++++.|++..++ |++.|--|.
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg~dgePvV~Hg~tlts~i~f~dv~~~I~~~AF~~S~yPvIlslE~Hc 99 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDGPDGMPVIYHGHTLTTKIKFSDVLHTIKEHAFVTSEYPIILSIEDHC 99 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecCCCCCEEEEeCCcCCCceEHHHHHHHHHHhhccCCCCCEEEEEcccC
Confidence 356777777888888877 89999999999651 111000011222 378999999998775 566566663
No 218
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=33.73 E-value=37 Score=40.50 Aligned_cols=49 Identities=18% Similarity=0.434 Sum_probs=39.4
Q ss_pred CCEEEEeeeeeeeccCCCCcc---cchHHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 009335 284 VDGVIVNCWWGIVEGWNPQKY---AWSGYR---ELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (537)
Q Consensus 284 VdGV~VDVWWGiVE~~~p~~Y---DWSgY~---~L~~mvr~~GLKv~vvmSFHqCGGNVGDt 339 (537)
+.-||++-. -+..++-| +|.-|+ .|.+.++++|+++.. ||.=||.||--
T Consensus 558 ~QEVMlGYS----DSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lrl---FHGRGGtVGRG 612 (910)
T COG2352 558 VQEVMLGYS----DSNKDGGYLAANWALYKAQLALVELCEKAGVELRL---FHGRGGSVGRG 612 (910)
T ss_pred ceEEEeccc----ccccccchhhhHHHHHHHHHHHHHHHHHhCceEEE---EccCCCCCCCC
Confidence 888998643 33455555 788886 689999999999998 99999999863
No 219
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=33.54 E-value=2.4e+02 Score=35.13 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEE-eeeeeeeccC------------C-------CCcc---cchHHHHHHHHHHHcCCcEEEEEee-
Q 009335 274 QEISHMKALNVDGVIV-NCWWGIVEGW------------N-------PQKY---AWSGYRELFNIIREFNLKVQVVMAF- 329 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~V-DVWWGiVE~~------------~-------p~~Y---DWSgY~~L~~mvr~~GLKv~vvmSF- 329 (537)
+.|..||++||+.|.+ +|+=..-|.. . +..| .-..++++++.++++||+|++=+-|
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~N 270 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFN 270 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 4577999999999976 3331111100 0 1111 3346999999999999999886666
Q ss_pred eccCCC
Q 009335 330 HEYGAN 335 (537)
Q Consensus 330 HqCGGN 335 (537)
|-+-+|
T Consensus 271 Ht~~~~ 276 (1221)
T PRK14510 271 HTGESN 276 (1221)
T ss_pred cccCCC
Confidence 655443
No 220
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=33.50 E-value=62 Score=34.88 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeecc----CCCCcccchHHHHHHHHHHHcCCcEEEEEee
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~----~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSF 329 (537)
.+++.|+.||+||.+.++..-===+.|. ..|.+-++.+..++++.+.+.||+-...|-|
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 4567799999999999887544333333 4588899999999999999999999888874
No 221
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=33.43 E-value=1e+02 Score=31.60 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=43.9
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---ch---HHHHHHHHHHHcCCc-----EEEEEeeecc
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK-----VQVVMAFHEY 332 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WS---gY~~L~~mvr~~GLK-----v~vvmSFHqC 332 (537)
++|.-+...+.-.++| ..|+-.|++|||=|- ...|-.|. +. .++++++.|++.+++ |++.|--|.|
T Consensus 24 ~Ql~~~ss~e~Y~~aL-~~GcRcvElD~wdg~--~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlSlE~Hcs 100 (227)
T cd08594 24 DQLLSQSRVDMYARVL-QAGCRCVEVDCWDGP--DGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEYPVILSIENHCS 100 (227)
T ss_pred CcccCcccHHHHHHHH-HhCCcEEEEEeecCC--CCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCCCEEEEecccCC
Confidence 4555555666677777 679999999999762 11233332 11 378999999998766 5665666643
No 222
>PRK13753 dihydropteroate synthase; Provisional
Probab=33.20 E-value=3.9e+02 Score=28.03 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=43.7
Q ss_pred eeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc------cchHHHHHHHHHHHcCC
Q 009335 258 HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY------AWSGYRELFNIIREFNL 321 (537)
Q Consensus 258 d~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y------DWSgY~~L~~mvr~~GL 321 (537)
|..++++...+.+...+..+.|-+.|+|.|-|.- |+..|+-= +|.-...+++.+++.+.
T Consensus 13 DSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGg-----eSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~ 77 (279)
T PRK13753 13 DSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGP-----AASHPDARPVSPADEIRRIAPLLDALSDQMH 77 (279)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECC-----CCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 4455667777888888888888899999999974 55446532 57777788888888754
No 223
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=33.09 E-value=1.1e+02 Score=31.96 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=43.0
Q ss_pred ccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCcccch-----HHHHHHHHHHHcCCcEEEEEe
Q 009335 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~~~p~~YDWS-----gY~~L~~mvr~~GLKv~vvmS 328 (537)
..+.+.+.+-++.+++.| +++|.+|+-|- .+.+.|+|. --+++++.+++.|+||++++-
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEec
Confidence 456788888888888866 57888887442 134455554 356899999999999988654
No 224
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=32.93 E-value=35 Score=34.92 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeee--eeee-----cc------CCCCccc--------chHHHHHHHHHHHcCCcEEEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCW--WGIV-----EG------WNPQKYA--------WSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVW--WGiV-----E~------~~p~~YD--------WSgY~~L~~mvr~~GLKv~vv 326 (537)
+.+.++.-|+.+|+.|.+.|.+.|. |-.. ++ ..+.++| |...+++++++.+.||-+.+|
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv 107 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALV 107 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4577888899999999999999998 5422 11 1122233 456788999999999999865
Q ss_pred Eee
Q 009335 327 MAF 329 (537)
Q Consensus 327 mSF 329 (537)
+..
T Consensus 108 ~~w 110 (289)
T PF13204_consen 108 PFW 110 (289)
T ss_dssp SS-
T ss_pred EEE
Confidence 553
No 225
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=32.49 E-value=1.4e+02 Score=23.41 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+++-++.+|+.|++.|-+- +-. +..++.++.+.+++.||++++
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT------Dh~-----~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT------DHG-----NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe------eCC-----cccCHHHHHHHHHHcCCeEEE
Confidence 36677889999999999663 321 566688888999999999876
No 226
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=32.44 E-value=1.1e+02 Score=30.20 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=39.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccC
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCG 333 (537)
+.+.+.....|+.++++||..|. + +|.. +.+. +| +.+.+++++.|+.+.+.+.+|.+-
T Consensus 28 ~~~~~~~~~~~~~~~~~Gvttiv-~--~~~~---~~~~-~~---~~~~~~~~~~g~~v~~~~G~hp~~ 85 (293)
T cd00530 28 LADVEAAKEELKRFRAHGGRTIV-D--ATPP---GIGR-DV---EKLAEVARATGVNIVAATGFYKDA 85 (293)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEE-E--cCCc---ccCc-CH---HHHHHHHHHhCCcEEEecccCCCc
Confidence 55667888899999999998872 2 2210 0000 33 666777888999999988888543
No 227
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=32.19 E-value=96 Score=32.88 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCEEEEeee---eeeeccCC--CCcccchHHHHHHHHHHHcCCc-EE
Q 009335 273 RQEISHMKALNVDGVIVNCW---WGIVEGWN--PQKYAWSGYRELFNIIREFNLK-VQ 324 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVW---WGiVE~~~--p~~YDWSgY~~L~~mvr~~GLK-v~ 324 (537)
.++++.||++||++|.+.+= -.....-. ....+|..-.+-++.++++|++ |.
T Consensus 163 ~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~ 220 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIG 220 (371)
T ss_pred HHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeec
Confidence 56679999999999997642 11111101 1245677788889999999996 63
No 228
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=32.17 E-value=1.1e+02 Score=29.82 Aligned_cols=56 Identities=29% Similarity=0.455 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
+.+.+++.++.||+ ++|.|.+-.=||.=....| ...-++++..+-+.|..+++ +=|
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~DvIi--G~H 213 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADVVI--GHH 213 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCEEE--cCC
Confidence 46889999999998 7999999999996322122 23346788888889988777 644
No 229
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=32.10 E-value=1.8e+02 Score=28.70 Aligned_cols=54 Identities=11% Similarity=-0.071 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHc-CCcEEE
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF-NLKVQV 325 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~-GLKv~v 325 (537)
..|.+.|+.+|++|+++|.+.+=+..-.. .+. .+=...+++.+++.+. |+.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL-SRP-LKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC-CCC-CCHHHHHHHHHHHHHcCCCcEEE
Confidence 56889999999999999998763211000 000 0115688888999998 666544
No 230
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=31.86 E-value=1.5e+02 Score=36.51 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=50.2
Q ss_pred ceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 257 NHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 257 Ld~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
+|++-....||+-+.|+..++++|++|. -|...+- =|.+....--+|+..+|.++++.+.+.|...+.
T Consensus 639 idifrifD~lN~~~n~~~~~~~~~~~g~-~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ 707 (1143)
T TIGR01235 639 IDIFRVFDSLNWVENMRVGMDAVAEAGK-VVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILG 707 (1143)
T ss_pred CCEEEECccCcCHHHHHHHHHHHHHcCC-EEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 5555555678899999999999999997 4444444 443333233489999999999999999987643
No 231
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.69 E-value=1.3e+02 Score=31.98 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=47.2
Q ss_pred cEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeee--eeeccCCCC---------------------cccc
Q 009335 250 PVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWW--GIVEGWNPQ---------------------KYAW 306 (537)
Q Consensus 250 pVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWW--GiVE~~~p~---------------------~YDW 306 (537)
|+||.+-+++ |-+| +-+..++-++..|++|.|+|-.--|= .++.+..+. .+.+
T Consensus 1 ~~~iIAEiG~-NH~G---~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 76 (327)
T TIGR03586 1 PPFIIAELSA-NHNG---SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPW 76 (327)
T ss_pred CCEEEEEECC-CCCC---hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCH
Confidence 4566666653 3333 45777788889999999998766541 111111111 1235
Q ss_pred hHHHHHHHHHHHcCCcEEE
Q 009335 307 SGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 307 SgY~~L~~mvr~~GLKv~v 325 (537)
.+|.+|++.+++.||.+..
T Consensus 77 e~~~~L~~~~~~~Gi~~~s 95 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFS 95 (327)
T ss_pred HHHHHHHHHHHHhCCcEEE
Confidence 6688999999999999876
No 232
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=31.63 E-value=1.4e+02 Score=29.98 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=41.0
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCc--ccchHHHHHHHHHHHc-CCcEEE
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK--YAWSGYRELFNIIREF-NLKVQV 325 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~--YDWSgY~~L~~mvr~~-GLKv~v 325 (537)
.+.+.+.+..+.++++|+|+|+|++.-=.+.. .... -+...+.++++.++++ ++.|.+
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~-~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKG-GGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCC-CcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 35788999999999999999999977433322 1111 2556788899999887 555544
No 233
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=31.61 E-value=1.1e+02 Score=31.62 Aligned_cols=64 Identities=27% Similarity=0.427 Sum_probs=43.6
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccc------hHHHHHHHHHHHcCCc-----EEEEEeee
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW------SGYRELFNIIREFNLK-----VQVVMAFH 330 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDW------SgY~~L~~mvr~~GLK-----v~vvmSFH 330 (537)
++|.-....+.-.++|+ .|+-.|++|||=| +...|-.|.= =.++++++.|++.++. |++.|--|
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg--~~~eP~v~HG~t~t~~i~f~~v~~~I~~~aF~~s~yPvIlslE~H 98 (257)
T cd08593 24 DQLKGPSSTEAYIRALK-KGCRCVELDCWDG--PDGEPIIYHGHTLTSKILFKDVIQAIREYAFKVSPYPVILSLENH 98 (257)
T ss_pred CcccCCccHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 45666666777777777 7999999999976 2212433321 2478999999998866 45555545
No 234
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=31.57 E-value=1.7e+02 Score=26.45 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHc-CCcEEEEEeee
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF-NLKVQVVMAFH 330 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~-GLKv~vvmSFH 330 (537)
.+.+...++.||+.|||.|-+..= ++-....+.--+ ++++.++|++. |++|+. .+|
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC--~~~~~~~~~CP~--~~~~~~~I~~~~gi~VV~--GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSC--MVKGNPHGPCPH--IDEIKKIIEEKFGIEVVE--GTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCC--EecCCCCCCCCC--HHHHHHHHHHHhCCCEee--ecC
Confidence 578888999999999997765432 222211113333 99999999999 998776 665
No 235
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=31.50 E-value=1.1e+02 Score=30.46 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
...+||++|+++|.|.- ++++|.=+--.+-+..+.++||+.++
T Consensus 73 S~~mLkd~G~~~viiGH--------SERRf~Etdi~~Kv~~a~~~gl~~Iv 115 (205)
T TIGR00419 73 SAEMLKDIGAKGTLINH--------SERRMKLADIEKKIARLKELGLTSVV 115 (205)
T ss_pred CHHHHHHcCCCEEEECc--------ccCCCCccHHHHHHHHHHHCCCEEEE
Confidence 45789999999999974 34445555566777788899999888
No 236
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=31.49 E-value=2.2e+02 Score=25.25 Aligned_cols=56 Identities=9% Similarity=0.158 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSF 329 (537)
..+.+.+.|+.++++|.-.|.+.+.-|+- ..+...+.++++.+++.|.+-+.+..|
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~ 189 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLP------GETEEDFEETLKLLKELGPDRVSIFPL 189 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCC------CCCHHHHHHHHHHHHHcCCCeEEeeee
Confidence 34778888888888884234444444433 126677888888888888885444443
No 237
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=31.47 E-value=35 Score=33.54 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.6
Q ss_pred ccchHHHHHHHHHHHcCCcEEE
Q 009335 304 YAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 304 YDWSgY~~L~~mvr~~GLKv~v 325 (537)
|+|+.|+.|++.++++||+++.
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipviA 107 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVIA 107 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EEE
T ss_pred CchHHHHHHHHHHHHCCCCEEE
Confidence 6899999999999999999998
No 238
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=31.42 E-value=1.1e+02 Score=26.82 Aligned_cols=50 Identities=24% Similarity=0.503 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
+.++..++.|+++.=+. .|=+|+| ..-||--++..++..+++...+|.+|
T Consensus 71 ~~~~~~~~~l~~l~~~~-~I~iW~~------~~~~dq~gl~~~l~~L~~~~~~I~~v 120 (124)
T PF08874_consen 71 QRFEQELKRLEELPEDD-PIVIWYG------DNAYDQLGLRYLLSLLKDKPNRIYVV 120 (124)
T ss_pred HHHHHHHHHHHhCCCCC-EEEEEeC------CCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 56778888888886666 8888986 67899999999999999999887775
No 239
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=31.36 E-value=1.2e+02 Score=34.80 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEee
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSF 329 (537)
.+.++.+++..+++||+.|+|-.-+..+ .-....++.+++.|+++++.+||
T Consensus 96 ddvv~~~v~~a~~~Gid~~rifd~lnd~----------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 96 DDVVERFVERAVKNGMDVFRVFDAMNDP----------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeeCCcH----------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 4567778888888888887776544333 34667778888888877776664
No 240
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=31.25 E-value=96 Score=32.25 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=44.8
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---ch---HHHHHHHHHHHcCCc-----EEEEEeee
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK-----VQVVMAFH 330 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WS---gY~~L~~mvr~~GLK-----v~vvmSFH 330 (537)
++|.-....+.-.++|+ .|+-.|++|||=|---...|-.|. +. .++++++.|++.+.+ |++.|--|
T Consensus 24 ~Ql~g~ss~e~y~~aL~-~GcRcvElD~Wdg~~~~~eP~V~HG~tlts~i~f~~v~~aIk~~AF~~s~yPvIlslE~H 100 (257)
T cd08591 24 RQFGGKSSVEMYRQVLL-SGCRCIELDCWDGKGEDEEPIITHGKTMCTEILFKDVIEAIAETAFKTSEYPVILSFENH 100 (257)
T ss_pred CcccCcccHHHHHHHHH-hCCcEEEEEeecCCCCCCCCEEeeCCCCccCeEHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 56666677778888887 799999999996641001233222 22 378999999997766 56666656
No 241
>PRK14566 triosephosphate isomerase; Provisional
Probab=30.74 E-value=85 Score=32.49 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=34.2
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHH----HHHHHHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRE----LFNIIREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~----L~~mvr~~GLKv~v 325 (537)
.-.+||++||++|.|+- ++.+-.|..-++ -++.+.++||+.++
T Consensus 87 S~~mL~d~G~~~viiGH--------SERR~~f~Etd~~v~~Kv~~al~~gl~pIv 133 (260)
T PRK14566 87 SGQMLKDAGCRYVIIGH--------SERRRMYGETSNIVAEKFAAAQKHGLTPIL 133 (260)
T ss_pred CHHHHHHcCCCEEEECc--------ccccCCCCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34689999999999974 566666776677 67788899999888
No 242
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=30.69 E-value=89 Score=33.66 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeee-eeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWG-IVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWG-iVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGN 335 (537)
+....-|+++-++|+|.|.|---|+ .+......+|.+.+-.++++.+++.+-+ .+|+ |-|+|.
T Consensus 189 d~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~pii--~f~~ga 252 (352)
T COG0407 189 DAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-VPVI--HFCKGA 252 (352)
T ss_pred HHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-CcEE--EECCCc
Confidence 3444566777789999999987775 3444468889999999999999988877 3322 567754
No 243
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=30.61 E-value=48 Score=40.06 Aligned_cols=54 Identities=22% Similarity=0.422 Sum_probs=36.0
Q ss_pred cCCCEEEEeeeeeeeccCCCCcccchHHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 009335 282 LNVDGVIVNCWWGIVEGWNPQKYAWSGYR---ELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (537)
Q Consensus 282 aGVdGV~VDVWWGiVE~~~p~~YDWSgY~---~L~~mvr~~GLKv~vvmSFHqCGGNVGDt 339 (537)
.|..-||+.-.=+-... |---=+|+-|+ +|.++.+++|+++.+ ||.+||.||--
T Consensus 616 ~~~qeVMlGYSDS~Kd~-G~laa~w~l~~Aq~~L~~~~~~~gV~l~~---FhGrGGsvgRG 672 (974)
T PTZ00398 616 NGIQEIMIGYSDSGKDG-GRLTSAWELYKAQERLSNIARQYGVEIRF---FHGRGGSVSRG 672 (974)
T ss_pred CCeEEEEEecccccccc-cHHHHHHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCC
Confidence 67777777654221111 11122677665 567778999999998 99999999863
No 244
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=30.38 E-value=92 Score=32.28 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHH----HHHHHHHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYR----ELFNIIREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~----~L~~mvr~~GLKv~v 325 (537)
...+||++|+++|.|+ +++.+-.|..=+ +-+..++++||+.++
T Consensus 80 S~~mL~d~G~~~viiG--------HSERR~~~~E~d~~i~~K~~aa~~~Gl~pIl 126 (251)
T COG0149 80 SAEMLKDLGAKYVLIG--------HSERRLYFGETDELIAKKVKAAKEAGLTPIL 126 (251)
T ss_pred CHHHHHHcCCCEEEEC--------ccccccccccchHHHHHHHHHHHHCCCeEEE
Confidence 3468999999999997 467777888777 778889999999777
No 245
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=29.93 E-value=2.1e+02 Score=36.94 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=48.7
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc-------------chHHHHHHHHHHHcCCcEEEEEeeeccC
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHEYG 333 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD-------------WSgY~~L~~mvr~~GLKv~vvmSFHqCG 333 (537)
..-+.+.+.|..||++||+.|-+.-.+--... +...|| ...+++|++.+++.||+|++=+-+.-+|
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~g-s~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPILKARPG-STHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCcCCCCC-CCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 45588999999999999999988766642221 233333 3467899999999999998866554444
No 246
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=29.92 E-value=1.4e+02 Score=29.57 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=47.9
Q ss_pred EEeeceeecCCCcccCHHHHHHHHHHHH-----HcCCC----EEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcE
Q 009335 253 VMLANHVINNFCQLVDPELIRQEISHMK-----ALNVD----GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (537)
Q Consensus 253 VMLPLd~V~~~~~l~~~~al~~dL~~LK-----~aGVd----GV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv 323 (537)
+++|-+.|. ++.+.|.++...-|+.|| .+|.. .|.|+.|+..+|+ +.+.+.++.+||++
T Consensus 24 ~~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~ 91 (239)
T TIGR02529 24 VMQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEV 91 (239)
T ss_pred Eeccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCce
Confidence 345555554 577999999999999998 34553 5677788877766 57889999999999
Q ss_pred EEEEe
Q 009335 324 QVVMA 328 (537)
Q Consensus 324 ~vvmS 328 (537)
..++.
T Consensus 92 ~~li~ 96 (239)
T TIGR02529 92 LHVLD 96 (239)
T ss_pred EEEee
Confidence 87665
No 247
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=29.78 E-value=1.9e+02 Score=32.46 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=52.9
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccc
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~I 342 (537)
-.+++.+.++..++.+|++|....-.-+. + +| +|+-.+|.++++.+.+.|.+.+. +-|+.-+
T Consensus 126 d~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~------sp-~~t~~y~~~~a~~l~~~Gad~I~----------IkDtaG~ 188 (468)
T PRK12581 126 DALNDPRNIQQALRAVKKTGKEAQLCIAYTT------SP-VHTLNYYLSLVKELVEMGADSIC----------IKDMAGI 188 (468)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe------CC-cCcHHHHHHHHHHHHHcCCCEEE----------ECCCCCC
Confidence 35789999999999999999875433333 3 24 78999999999999999988654 2367777
Q ss_pred ccChhHHh
Q 009335 343 SLPQWVME 350 (537)
Q Consensus 343 pLP~WV~e 350 (537)
..|.=+.+
T Consensus 189 l~P~~v~~ 196 (468)
T PRK12581 189 LTPKAAKE 196 (468)
T ss_pred cCHHHHHH
Confidence 77775554
No 248
>PRK10426 alpha-glucosidase; Provisional
Probab=29.61 E-value=2.3e+02 Score=32.56 Aligned_cols=88 Identities=13% Similarity=0.209 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcC--CCEEEEeeeeeeecc-CCCCc---cc-----chHHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 009335 268 DPELIRQEISHMKALN--VDGVIVNCWWGIVEG-WNPQK---YA-----WSGYRELFNIIREFNLKVQVVMAFHEYGAND 336 (537)
Q Consensus 268 ~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~-~~p~~---YD-----WSgY~~L~~mvr~~GLKv~vvmSFHqCGGNV 336 (537)
..+.+.+-++.+++.| +|+|-+|-|-+.-.. .+... |. |-..+++++.+++.|+|+++++-=|-+
T Consensus 219 ~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~---- 294 (635)
T PRK10426 219 GTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA---- 294 (635)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC----
Confidence 3567888899999987 578878866332221 11111 22 344589999999999999996652221
Q ss_pred CCCcccccChhHHhhhccCCCeEeeCCCCCc
Q 009335 337 SGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367 (537)
Q Consensus 337 GDt~~IpLP~WV~e~g~~~PDI~ytDr~G~R 367 (537)
.-.-+.+++++ -+.|.+|.+|..
T Consensus 295 -------~~~~~y~e~~~-~gy~vk~~~g~~ 317 (635)
T PRK10426 295 -------SDGDLCEEAAE-KGYLAKDADGGD 317 (635)
T ss_pred -------CCCHHHHHHHH-CCcEEECCCCCE
Confidence 11123444443 367888887753
No 249
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=29.53 E-value=66 Score=33.62 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=27.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeee
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWG 294 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWG 294 (537)
|.+++++++|++..|++||+|-...-.|-
T Consensus 54 l~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf 82 (345)
T PF14307_consen 54 LRDPEVMEKQAELAKEYGIDGFCFYHYWF 82 (345)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeeec
Confidence 68999999999999999999999998787
No 250
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.38 E-value=1.9e+02 Score=29.86 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=67.5
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccc
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWIS 343 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~Ip 343 (537)
|.+..++.+.+--+.+|++|+..+.-..|==..-+.+-+-....+++.|.+..++.||.+.. ..|
T Consensus 23 C~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~------------- 87 (250)
T PRK13397 23 CSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIM------------- 87 (250)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeC-------------
Confidence 56889999999999999999999999988411111111112346799999999999999988 533
Q ss_pred cChhHHhhhccCCCeEeeCCCCCccccccc-ccccccccc
Q 009335 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLS-WGVDKERVL 382 (537)
Q Consensus 344 LP~WV~e~g~~~PDI~ytDr~G~Rn~EyLS-lg~D~~pvl 382 (537)
-|.-+-.. .++.|++-.=-.--+|.+.|- .+--..||+
T Consensus 88 d~~~v~~~-~e~vdilqIgs~~~~n~~LL~~va~tgkPVi 126 (250)
T PRK13397 88 SERQLEEA-YDYLDVIQVGARNMQNFEFLKTLSHIDKPIL 126 (250)
T ss_pred CHHHHHHH-HhcCCEEEECcccccCHHHHHHHHccCCeEE
Confidence 12222222 236777755555555666654 444455775
No 251
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=29.23 E-value=1.4e+02 Score=31.86 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=46.0
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchH-----HHHHHHHHHHcCCcEEE
Q 009335 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----YRELFNIIREFNLKVQV 325 (537)
Q Consensus 263 ~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSg-----Y~~L~~mvr~~GLKv~v 325 (537)
-|.+.+++.+.+--+.||++|.+.++..+| +..-.-|.|.+ |+-|.+.+++.||.+..
T Consensus 100 PCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 100 PCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred cCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcEEE
Confidence 466789999999999999999997776666 21222355554 99999999999999988
No 252
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=29.23 E-value=4.8e+02 Score=26.74 Aligned_cols=130 Identities=15% Similarity=0.122 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHH------------------HHHHHHcCCcEEEEEee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYREL------------------FNIIREFNLKVQVVMAF 329 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L------------------~~mvr~~GLKv~vvmSF 329 (537)
+++.+.+.++.++..|+++|.+.+--- +++ ...+|...+++ +..+.++|.+.+. .
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~---~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~---v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLG---RRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIV---V 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCC---CCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEE---E
Confidence 568888889999999999998876421 111 11344322222 2334445554443 4
Q ss_pred eccCCCCCCCcccccChhHHhhhccCC-CeEeeCCC----CCccccccccccccccccCCCcchH--------HHHHHHH
Q 009335 330 HEYGANDSGDAWISLPQWVMEIGKGNQ-DIFFTDRE----GRRNTECLSWGVDKERVLNGRTGIE--------VYFDFMR 396 (537)
Q Consensus 330 HqCGGNVGDt~~IpLP~WV~e~g~~~P-DI~ytDr~----G~Rn~EyLSlg~D~~pvl~GRTpie--------~Y~DFMr 396 (537)
|.+||-..|. .++....+.++.+.-+ +|-..=-- |..-.++|.+|+|-+-| ||.-+. --.++++
T Consensus 200 ~~~gG~~~~~-g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i--g~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLDG-APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI--GRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCCC-CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE--cHHHHHHHHhcCHHHHHHHHH
Confidence 4566654432 2233334444433322 33332223 44445688899997543 553332 2246777
Q ss_pred HHHHHHhhhhh
Q 009335 397 SFRTEFDDLFV 407 (537)
Q Consensus 397 SFr~~Fa~~l~ 407 (537)
.+++++...+.
T Consensus 277 ~l~~el~~~m~ 287 (299)
T cd02809 277 ILRDELERAMA 287 (299)
T ss_pred HHHHHHHHHHH
Confidence 78887777653
No 253
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=28.98 E-value=48 Score=39.74 Aligned_cols=33 Identities=21% Similarity=0.558 Sum_probs=27.4
Q ss_pred cchHHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCCc
Q 009335 305 AWSGYR---ELFNIIREFNLKVQVVMAFHEYGANDSGDA 340 (537)
Q Consensus 305 DWSgY~---~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~ 340 (537)
+|+-|+ +|.++.++.|+++.+ ||.+||.||---
T Consensus 581 ~w~l~~Aq~~L~~~~~~~gv~l~~---FhGrGGsv~RGG 616 (911)
T PRK00009 581 NWALYRAQEALVELAEKHGVRLTL---FHGRGGTVGRGG 616 (911)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCCC
Confidence 687776 567778999999998 999999998653
No 254
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=28.98 E-value=1.8e+02 Score=28.24 Aligned_cols=57 Identities=28% Similarity=0.416 Sum_probs=42.0
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
.+.+.+++.++.||+. +|.|.+-+=||.-....| -..-+++++.+-+.|..+++ +=|
T Consensus 159 ~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p----~~~~~~la~~l~~~G~D~Ii--G~H 215 (239)
T cd07381 159 LDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYP----TPEQRELARALIDAGADLVI--GHH 215 (239)
T ss_pred cCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCC----CHHHHHHHHHHHHCCCCEEE--cCC
Confidence 4568899999999988 999999999996322122 23446777788889988887 544
No 255
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=28.92 E-value=1.1e+02 Score=31.80 Aligned_cols=44 Identities=11% Similarity=0.456 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCC-------CcccchHHHHHHHHHHHcCCc
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNP-------QKYAWSGYRELFNIIREFNLK 322 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p-------~~YDWSgY~~L~~mvr~~GLK 322 (537)
+.|+.||++||+.|.|.| |...+ ..+++.-+.+.+++++++|++
T Consensus 100 e~l~~l~~~G~~rvsiGv-----qS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL-----QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HHHHHHHHcCCCEEEEEC-----ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 578999999999999988 44332 346788899999999999987
No 256
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=28.79 E-value=1.1e+02 Score=34.26 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
+.+.|.+..+.++++|.++|||++++. -|+....|.+.+++.+|-|+.=-+||
T Consensus 246 ~~~em~~ra~~a~e~G~~~~mv~~~~~----------G~~al~~l~~~~~~~~l~IhaHrA~~ 298 (475)
T CHL00040 246 TCEEMYKRAVFARELGVPIVMHDYLTG----------GFTANTSLAHYCRDNGLLLHIHRAMH 298 (475)
T ss_pred CHHHHHHHHHHHHHcCCceEEEecccc----------ccchHHHHHHHhhhcCceEEeccccc
Confidence 579999999999999999999998875 46677777777778876665544455
No 257
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=28.65 E-value=95 Score=32.34 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=46.4
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc---cch---HHHHHHHHHHHcCCc-----EEEEEeeec
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK-----VQVVMAFHE 331 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y---DWS---gY~~L~~mvr~~GLK-----v~vvmSFHq 331 (537)
++|.-....+.-+++|+ .|+-.|++|||=|.-....|-.| .+. .++++++.|++..++ |++.|--|.
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~ePvV~HG~tlts~i~f~dv~~~I~~~AF~~s~yPvIlslE~Hc 101 (261)
T cd08624 24 GQFSGLSSPEMYRQVLL-SGCRCVELDCWKGKPPDEEPIITHGFTMTTEILFKDAIEAIAESAFKTSPYPVILSFENHV 101 (261)
T ss_pred CccCCccCHHHHHHHHH-cCCcEEEEEecCCCCCCCCCEEeeCCCcccCcCHHHHHHHHHHHhccCCCCCEEEEehhcC
Confidence 46666677778888887 79999999999773211123332 233 378999999997765 566666674
No 258
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.46 E-value=1.3e+02 Score=26.86 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=32.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
+.+++.+.+-|+.++++|+.+|-+- ++ +.=.++.+.++++||+++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~----------~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQ----------PG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE-----------TT----S--HHHHHHHHHTT-EEE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEE----------cc----hHHHHHHHHHHHcCCEEE
Confidence 5688999999999999999887542 22 556899999999999986
No 259
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=28.38 E-value=1e+02 Score=34.94 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=41.4
Q ss_pred cchHHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCCccccc-ChhHHhhhccCCCeEeeCCCC
Q 009335 305 AWSGYR---ELFNIIREFNLKVQVVMAFHEYGANDSGDAWISL-PQWVMEIGKGNQDIFFTDREG 365 (537)
Q Consensus 305 DWSgY~---~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpL-P~WV~e~g~~~PDI~ytDr~G 365 (537)
.|.-|. +|.++.++.|+++.+ ||.+||.+|-- -+ |..+.++-..+|..+-...+|
T Consensus 224 ~~al~~Aq~~L~e~~ee~gV~l~p---fhGrGgspfRG---Gg~P~n~a~il~qppG~~t~TeQs 282 (506)
T TIGR02751 224 VLSNKYALSRLYELSEETGISIYP---IIGAGSLPFRG---HLSPENIERVLDEYPGVYTFTVQS 282 (506)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---EeecCCCCcCC---CCChhhHHHHHhcCCCceEEeeec
Confidence 566554 567778999999999 89999998765 35 777766667888866555555
No 260
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.29 E-value=6e+02 Score=26.34 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=80.3
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeee--eeee-c-------------------------cCCCCcccchHHHHHHHHH
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNCW--WGIV-E-------------------------GWNPQKYAWSGYRELFNII 316 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDVW--WGiV-E-------------------------~~~p~~YDWSgY~~L~~mv 316 (537)
.+...+.|++-|..|...++|.+.+-.= |.+- + ....+.|-=+-+++|++.+
T Consensus 12 ~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA 91 (326)
T cd06564 12 KYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYA 91 (326)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHH
Confidence 4667899999999999999999886222 3321 1 1135678888999999999
Q ss_pred HHcCCcEEEEEee-------------eccCCC----CCCCcccccCh---hHHhhhccCCCeEeeCCCCCcccccccccc
Q 009335 317 REFNLKVQVVMAF-------------HEYGAN----DSGDAWISLPQ---WVMEIGKGNQDIFFTDREGRRNTECLSWGV 376 (537)
Q Consensus 317 r~~GLKv~vvmSF-------------HqCGGN----VGDt~~IpLP~---WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~ 376 (537)
++.|+.|++-+-. ..|... ..++-++..|. .+.+.-++.-++| .+ ..+|+-+|.
T Consensus 92 ~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f-~~-----~~~~~HiGg 165 (326)
T cd06564 92 KDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGF-NP-----KSDTVHIGA 165 (326)
T ss_pred HHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhc-CC-----CCCEEEecc
Confidence 9999999984431 122210 11111222221 2222122222222 11 146788888
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHhhh
Q 009335 377 DKERVLNGRTGIEVYFDFMRSFRTEFDDL 405 (537)
Q Consensus 377 D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~ 405 (537)
|+.+.. .+..+.|.+|++.+.+.+.+.
T Consensus 166 DE~~~~--~~~~~~~~~f~~~~~~~v~~~ 192 (326)
T cd06564 166 DEYAGD--AGYAEAFRAYVNDLAKYVKDK 192 (326)
T ss_pred cccccc--CccHHHHHHHHHHHHHHHHHc
Confidence 886543 455677777777777777663
No 261
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.26 E-value=74 Score=32.29 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=40.7
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVG 337 (537)
.+.+...++ +.++.-++|+|.+|+- +|=+. ...+++++++++|+++++ +.| |.+++|
T Consensus 236 ~~~~~~~~~---~~~~~~~~d~v~~~~~~~GGi~----------~~~~~~~~a~~~gi~~~~--~~~-~~~~i~ 293 (316)
T cd03319 236 SCFSAADAA---RLAGGGAYDGINIKLMKTGGLT----------EALRIADLARAAGLKVMV--GCM-VESSLS 293 (316)
T ss_pred CCCCHHHHH---HHHhcCCCCEEEEeccccCCHH----------HHHHHHHHHHHcCCCEEE--ECc-hhhHHH
Confidence 455555554 5567789999999987 44333 379999999999999988 433 354444
No 262
>PLN02561 triosephosphate isomerase
Probab=28.19 E-value=3.4e+02 Score=27.98 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=30.7
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHH----HHHHHHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRE----LFNIIREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~----L~~mvr~~GLKv~v 325 (537)
...+||++|+++|.|+- ++.+-.|..=++ -+..+.++||+.++
T Consensus 80 S~~mL~d~G~~~viiGH--------SERR~~f~Etd~~v~~Kv~~al~~gl~pIv 126 (253)
T PLN02561 80 SAEMLVNLGIPWVILGH--------SERRALLGESNEFVGDKVAYALSQGLKVIA 126 (253)
T ss_pred CHHHHHHcCCCEEEECc--------ccccCccCCChHHHHHHHHHHHHCcCEEEE
Confidence 45789999999999975 344445555533 34467888998777
No 263
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=28.08 E-value=1.1e+02 Score=30.31 Aligned_cols=53 Identities=26% Similarity=0.243 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.++-+...|+..||.||.+|+==-+|+=..+ +.=...++.++.++++|+||.+
T Consensus 15 v~~i~~~~L~~~Gikgvi~DlDNTLv~wd~~--~~tpe~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 15 VFDITPDILKAHGIKGVILDLDNTLVPWDNP--DATPELRAWLAELKEAGIKVVV 67 (175)
T ss_pred HhhCCHHHHHHcCCcEEEEeccCceecccCC--CCCHHHHHHHHHHHhcCCEEEE
Confidence 4455677899999999999975333332122 2223377779999999999987
No 264
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=27.99 E-value=1e+02 Score=33.79 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
+.+.+.+..+.++++|.++|||++++. -|+....|.+..++.+|-|+.=-+||
T Consensus 222 ~~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ih~Hra~~ 274 (412)
T TIGR03326 222 PVREMERRAELVADLGGQYVMVDVVVC----------GWSALQYIRELTEDLGLAIHAHRAMH 274 (412)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeecc----------chHHHHHHHHhhccCCeEEEEcCCcc
Confidence 358899999999999999999999875 45666666655556566555433333
No 265
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.86 E-value=1.3e+02 Score=32.96 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCC-------CcccchHHHHHHHHHHHcCCcEEE
Q 009335 274 QEISHMKALNVDGVIVNCWWGIVEGWNP-------QKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVWWGiVE~~~p-------~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
+-|+.||++|+..|.+.+ |...+ ...+.+.+.+.+++++++|+++.+
T Consensus 288 ell~~l~~aG~~~v~iGi-----ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGT-----EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred HHHHHHHHhCCcEEEEcc-----ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 467899999999998864 54332 456788899999999999998765
No 266
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=27.81 E-value=92 Score=32.90 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCEEEEeee---eeeeccCC--CCcccchHHHHHHHHHHHcCCc
Q 009335 273 RQEISHMKALNVDGVIVNCW---WGIVEGWN--PQKYAWSGYRELFNIIREFNLK 322 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVW---WGiVE~~~--p~~YDWSgY~~L~~mvr~~GLK 322 (537)
.++++.||++||+.+.+.+= -.....-. ...-+|..-.+.+++++++|++
T Consensus 162 ~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 45679999999999988641 11111100 1233566677889999999997
No 267
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=27.79 E-value=1.5e+02 Score=31.03 Aligned_cols=48 Identities=2% Similarity=0.099 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCC-------CcccchHHHHHHHHHHHcCCc-EEE
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNP-------QKYAWSGYRELFNIIREFNLK-VQV 325 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p-------~~YDWSgY~~L~~mvr~~GLK-v~v 325 (537)
.+.|+.||++||+.|.|.| |...+ ...++..+.+.+++++++|++ |.+
T Consensus 100 ~e~l~~l~~~Gv~risiGv-----qS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~ 155 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-----QSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISL 155 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-----ccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 3668999999999999986 33222 347889999999999999996 434
No 268
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=27.71 E-value=1.3e+02 Score=28.73 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcC
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFN 320 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~G 320 (537)
|++.+++.++.||..||+.|.|-.=|+.+-+. .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 67999999999999999999998888877663 2356777777765
No 269
>PRK00111 hypothetical protein; Provisional
Probab=27.68 E-value=95 Score=30.71 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhhhccceeEEEeccCCCccccCCCCCCCCC-cccCCCcc
Q 009335 390 VYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGE 442 (537)
Q Consensus 390 ~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGLGPaGELRYPSYp~~~G-W~~PGiGE 442 (537)
.-+-....+.+.+.++++..+|.+|-| .||. =||.. .| |+++|.|-
T Consensus 129 EL~~~r~~Il~rLNe~LG~~vV~dIri-~GP~----~psw~--~G~~~v~grgp 175 (180)
T PRK00111 129 NLRMMQRQILQVIAEKVGPDIITELRI-FGPQ----APSWR--KGPLHVKGRGP 175 (180)
T ss_pred HHHhHHHHHHHHHHHHcCcCceeEEEE-ECCC----CCCCC--cCCCcCCCCCC
Confidence 334445678888999999889999999 9996 35533 44 77888773
No 270
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=27.62 E-value=1.2e+02 Score=33.77 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
+.+.|.+..+.++++|.++|||++.+| |+....|.+.+++.+|-|+.=-+||
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccc
Confidence 478999999999999999999997765 4456677776677777665533444
No 271
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=27.39 E-value=1.5e+02 Score=31.11 Aligned_cols=59 Identities=8% Similarity=0.175 Sum_probs=44.0
Q ss_pred ccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCccc-----chHH--HHHHHHHHHcCCcEEEEEe
Q 009335 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYA-----WSGY--RELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aG--VdGV~VDVWWGiVE~~~p~~YD-----WSgY--~~L~~mvr~~GLKv~vvmS 328 (537)
..+.+.+.+-++.+++.| +|+|-+|+-|.. .-+.|. |.-- +++++.+++.|+||++++-
T Consensus 20 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 20 YKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 567788899999998866 588888866531 233444 3445 9999999999999999664
No 272
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=27.28 E-value=1.1e+02 Score=34.08 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
.+.|.+..+.++++|.++|||++++. -|+....|.+.+++.+|-|+.=-++|
T Consensus 240 ~~em~~ra~~~~e~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~IhaHrA~~ 291 (468)
T PRK04208 240 MEEMYKRAEFAKELGSPIVMIDVVTA----------GWTALQSLREWCRDNGLALHAHRAMH 291 (468)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccc----------ccHHHHHHHHhhhcCCcEEEecCCcc
Confidence 68999999999999999999999875 46666777776667777666544555
No 273
>PRK14565 triosephosphate isomerase; Provisional
Probab=27.13 E-value=1.1e+02 Score=31.24 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHH----HHHHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELF----NIIREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~----~mvr~~GLKv~v 325 (537)
...+||++|++.|.|.- ++.+=.|..=++++ ..+.++||+.++
T Consensus 77 S~~mLkd~G~~~viiGH--------SERR~~f~Etd~~V~~Kv~~al~~gl~pIv 123 (237)
T PRK14565 77 SAKMLKECGCSYVILGH--------SERRSTFHETDSDIRLKAESAIESGLIPII 123 (237)
T ss_pred CHHHHHHcCCCEEEECc--------ccccCcCCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45789999999999974 45555666667777 788889999887
No 274
>PLN02429 triosephosphate isomerase
Probab=26.74 E-value=1.1e+02 Score=32.68 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHH----HHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNI----IREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~m----vr~~GLKv~v 325 (537)
.-.+||++||..|.|+- ++.+=.|..=++++.. +.++||+.++
T Consensus 139 Sa~mLkd~Gv~~ViiGH--------SERR~~f~Etd~~V~~Kv~~al~~GL~pIv 185 (315)
T PLN02429 139 SVEQLKDLGCKWVILGH--------SERRHVIGEKDEFIGKKAAYALSEGLGVIA 185 (315)
T ss_pred CHHHHHHcCCCEEEeCc--------cccCCCCCcCHHHHHHHHHHHHHCcCEEEE
Confidence 45789999999999974 4555567777888888 9999999998
No 275
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=26.73 E-value=98 Score=32.38 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=42.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEE---------eee-e----eeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 266 LVDPELIRQEISHMKALNVDGVIV---------NCW-W----GIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~V---------DVW-W----GiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
.-|.+.|.+.|..||++||++|=+ +.- | -.|.+ ..| .+.-.++|++.+++.|+||++=+-|.
T Consensus 25 ~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~-~~G--t~~d~~~li~~~H~~gi~vi~D~V~N 100 (505)
T COG0366 25 GGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDP-HFG--TEEDFKELVEEAHKRGIKVILDLVFN 100 (505)
T ss_pred cccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 456688899999999999999933 222 1 12222 111 34457888999999999998855443
No 276
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=26.72 E-value=1.2e+02 Score=34.41 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=38.4
Q ss_pred cchHHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccC-hhHHhhhccCCCeEeeCCCCC
Q 009335 305 AWSGYR---ELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP-QWVMEIGKGNQDIFFTDREGR 366 (537)
Q Consensus 305 DWSgY~---~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP-~WV~e~g~~~PDI~ytDr~G~ 366 (537)
.|+-|+ +|.++.++.|+++.+ ||.+||.||-- -.| ..+..+-..+|..+-...+|.
T Consensus 216 ~w~l~~A~~~L~~~~~~~gv~i~~---fhGrGg~~~RG---Ggpp~~~~ail~q~~g~~r~TeQga 275 (494)
T PRK13655 216 VLSVKYALSRLYELEEELGVEIYP---ILGVGSLPFRG---HLSPENLENVLEEYPGVYTFTVQSA 275 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---eccCCCCCCCC---CCChHHHHHHHhCCCCCeEEEeccc
Confidence 566554 567788999999998 99999999864 233 222333357777666666663
No 277
>PLN02540 methylenetetrahydrofolate reductase
Probab=26.60 E-value=1.4e+02 Score=34.18 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHHHHHHH---HcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCC-----CCCCcc
Q 009335 270 ELIRQEISHMK---ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN-----DSGDAW 341 (537)
Q Consensus 270 ~al~~dL~~LK---~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGN-----VGDt~~ 341 (537)
..++.+|..|| +||++.+..- --||-..|.+.++++++.|+++-+|..+--+..- .-.-|.
T Consensus 153 ~~~~~dl~~Lk~KvdAGAdFiITQ-----------lfFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~G 221 (565)
T PLN02540 153 EAYQKDLAYLKEKVDAGADLIITQ-----------LFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCK 221 (565)
T ss_pred CChHHHHHHHHHHHHcCCCEEeec-----------cccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccC
Confidence 34566777776 4999987653 3589999999999999999766444342211100 001245
Q ss_pred cccChhHHhhhc
Q 009335 342 ISLPQWVMEIGK 353 (537)
Q Consensus 342 IpLP~WV~e~g~ 353 (537)
|.+|.|+.+..+
T Consensus 222 i~IP~~i~~rLe 233 (565)
T PLN02540 222 TKIPAEITAALE 233 (565)
T ss_pred CcCCHHHHHHHH
Confidence 889999998643
No 278
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=26.57 E-value=90 Score=32.80 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccc
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~I 342 (537)
..++.=...|+.+|++.+ ++.-+|++ | ..+..+++++.+++.+..+++-+. ||.|-|+..+
T Consensus 39 g~~~~v~~~L~~~g~~~~----~~~~v~~~-p---~~~~v~~~~~~~~~~~~D~IIavG----GGSviD~AK~ 99 (375)
T cd08179 39 GFLDKVEAYLKEAGIEVE----VFEGVEPD-P---SVETVLKGAEAMREFEPDWIIALG----GGSPIDAAKA 99 (375)
T ss_pred ChHHHHHHHHHHcCCeEE----EeCCCCCC-c---CHHHHHHHHHHHHhcCCCEEEEeC----CccHHHHHHH
Confidence 344455566788888643 44455542 2 778899999999999999888555 7788887653
No 279
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=26.55 E-value=47 Score=32.57 Aligned_cols=48 Identities=6% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
.+.|++||..||..||..|-+ ++|...=..|... .|.+.+++.||+++
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAWH 104 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EEE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEEE
Confidence 468999999999999999865 5665434444443 56788999998764
No 280
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=26.45 E-value=86 Score=33.98 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=49.2
Q ss_pred ccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEee---------------------eeee--eccCCCCccc
Q 009335 249 IPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNC---------------------WWGI--VEGWNPQKYA 305 (537)
Q Consensus 249 vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDV---------------------WWGi--VE~~~p~~YD 305 (537)
-|+|+.+-++. |-+|.| +.=.+-+++.|++|+|.|-.-- ||+. .|--..-..+
T Consensus 13 ~~~~iIAEig~-NHnG~l---e~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p 88 (347)
T COG2089 13 KKPFIIAEIGA-NHNGDL---ERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETP 88 (347)
T ss_pred CCcEEEeeecc-cccCcH---HHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCC
Confidence 34566666653 444545 5556678888999999998766 6652 2322244567
Q ss_pred chHHHHHHHHHHHcCCcE
Q 009335 306 WSGYRELFNIIREFNLKV 323 (537)
Q Consensus 306 WSgY~~L~~mvr~~GLKv 323 (537)
|+|+.+|++.+++.|+-+
T Consensus 89 ~e~~~~Lke~a~~~Gi~~ 106 (347)
T COG2089 89 LEWHAQLKEYARKRGIIF 106 (347)
T ss_pred HHHHHHHHHHHHHcCeEE
Confidence 888999999999999754
No 281
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=26.29 E-value=1.3e+02 Score=31.43 Aligned_cols=64 Identities=19% Similarity=0.379 Sum_probs=43.5
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc---cchH---HHHHHHHHHHcCCc-----EEEEEeee
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWSG---YRELFNIIREFNLK-----VQVVMAFH 330 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y---DWSg---Y~~L~~mvr~~GLK-----v~vvmSFH 330 (537)
++|.-+...+.-.++|+ .|+-.|++|||=| +...|-.| .+.. ++++++.|++..++ |++.|--|
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~Ik~~AF~~s~yPvIlslE~H 98 (258)
T cd08631 24 DQLRGQSSVEGYIRALK-RGCRCVEVDVWDG--PNGEPIVYHGHTFTSKILFKDVVAAVAQYAFQVSDYPVILSLENH 98 (258)
T ss_pred CcccCccCHHHHHHHHH-cCCcEEEEEeecC--CCCCcEEeeCCcccCCcCHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 55666666777777877 5999999999976 21123332 2222 89999999999877 44544445
No 282
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=26.20 E-value=1.3e+02 Score=30.83 Aligned_cols=63 Identities=22% Similarity=0.402 Sum_probs=42.2
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeee-eeccCCCCcc---cch---HHHHHHHHHHHcCCc-----EEEEEeee
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWG-IVEGWNPQKY---AWS---GYRELFNIIREFNLK-----VQVVMAFH 330 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWG-iVE~~~p~~Y---DWS---gY~~L~~mvr~~GLK-----v~vvmSFH 330 (537)
++|.-....+.-.++|+ .|+-.|++|||=| .-| |-.| .+. .++++++.|++.+.+ |++.|.-|
T Consensus 24 ~Ql~~~Ss~~~y~~aL~-~GcRcvElD~wdg~~~e---P~v~HG~t~ts~i~f~dv~~~Ik~~aF~~s~yPvILslE~H 98 (226)
T cd08558 24 DQLTGESSVEAYIRALL-RGCRCVELDCWDGPDGE---PVVYHGHTLTSKILFKDVIEAIKEYAFVTSPYPVILSLENH 98 (226)
T ss_pred CccCCccCHHHHHHHHH-hCCcEEEEEeecCCCCC---eEEeeCCCCccceEHHHHHHHHHHHhcccCCCCeEEEEecC
Confidence 45665566666667766 7999999999944 223 3333 222 378999999998665 55655556
No 283
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=25.91 E-value=1.6e+02 Score=30.71 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=43.5
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---c---hHHHHHHHHHHHcCCc-----EEEEEeee
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---W---SGYRELFNIIREFNLK-----VQVVMAFH 330 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---W---SgY~~L~~mvr~~GLK-----v~vvmSFH 330 (537)
++|.-+...+.-.++|+ .|+-.|++|||=|.- ..|-.|. + =.++++++.|++.+++ |++.|--|
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg~~--~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~s~yPvIlslE~H 98 (258)
T cd08630 24 SQIGGPSSTEAYVRAFA-QGCRCVELDCWEGPG--GEPVIYHGHTLTSKILFRDVIQAVRQHAFTASPYPVILSLENH 98 (258)
T ss_pred CcccCcccHHHHHHHHH-cCCcEEEEEeecCCC--CCcEEeeCCccccceEHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 45666666777777775 799999999996621 1233332 1 2378999999998776 55555555
No 284
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.86 E-value=3.5e+02 Score=28.49 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=42.5
Q ss_pred CCCCCCcCCCCCcccchhhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeece-eecCCCcccCHHHHHHHHHHHHHcCC
Q 009335 206 SRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANH-VINNFCQLVDPELIRQEISHMKALNV 284 (537)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLd-~V~~~~~l~~~~al~~dL~~LK~aGV 284 (537)
.|+++|+++ ..|..-..+ +.++.++...... ....++|-|=+..+ .+. +.+ +.+...+-++.|.++||
T Consensus 181 ~R~D~yGGs--lenR~r~~~---eii~~vr~~vg~~---~~~~~~v~~R~s~~~~~~--~g~-~~ee~~~i~~~L~~~Gv 249 (353)
T cd04735 181 RRTDEWGGS--LENRMRFPL---AVVKAVQEVIDKH---ADKDFILGYRFSPEEPEE--PGI-RMEDTLALVDKLADKGL 249 (353)
T ss_pred CCCcccCCc--HHHHHHHHH---HHHHHHHHHhccc---cCCCceEEEEECcccccC--CCC-CHHHHHHHHHHHHHcCC
Confidence 478899853 332222233 4555554442110 11345555544432 222 122 34555677788999999
Q ss_pred CEEEEeeee
Q 009335 285 DGVIVNCWW 293 (537)
Q Consensus 285 dGV~VDVWW 293 (537)
|.|.|..++
T Consensus 250 D~I~Vs~g~ 258 (353)
T cd04735 250 DYLHISLWD 258 (353)
T ss_pred CEEEeccCc
Confidence 999998874
No 285
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=25.80 E-value=2e+02 Score=27.42 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=39.6
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeecc
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEY 332 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqC 332 (537)
++.+||+.||+.|.|=+.-|. .|.=..|.+-++-++++||++-+..=++.|
T Consensus 16 d~~~vk~~gi~fviiKateG~-------~~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~ 66 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEGG-------DHVDKRFAENWRGARAAGLPRGAYHFFTFC 66 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCCC-------CccCHHHHHHHHHHHHcCCceEEEEEEecC
Confidence 577889999999999985332 344467888899999999999887655544
No 286
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=25.70 E-value=1.1e+02 Score=33.77 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
+.+.|.+..+.++++|.+.|||++++. -|+....|.+..++.+|-|+.
T Consensus 209 ~~~em~~ra~~a~e~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~iha 256 (412)
T cd08213 209 PVREMERRAELVADLGGKYVMIDVVVA----------GWSALQYLRDLAEDYGLAIHA 256 (412)
T ss_pred CHHHHHHHHHHHHHhCCCeEEeecccc----------ChHHHHHHHHhccccCeEEEE
Confidence 358899999999999999999999875 455555555555555555544
No 287
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.64 E-value=1.5e+02 Score=27.80 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=66.3
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccCh
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ 346 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~ 346 (537)
.+.+...+.|+.+-+.|+|||-+..+-. +....+++.+++.|++|+.+.+-
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~~------------~~~~~~l~~~~~~gIpvv~~d~~----------------- 89 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPVDP------------DSLAPFLEKAKAAGIPVVTVDSD----------------- 89 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESSST------------TTTHHHHHHHHHTTSEEEEESST-----------------
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCCH------------HHHHHHHHHHhhcCceEEEEecc-----------------
Confidence 5678888999999999999997654321 33568899999999998885551
Q ss_pred hHHhhhccCCCeEe--eCC--CCCccccccc--ccc-ccccccCCCcchHHHHHHHHHHHHHHhh
Q 009335 347 WVMEIGKGNQDIFF--TDR--EGRRNTECLS--WGV-DKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (537)
Q Consensus 347 WV~e~g~~~PDI~y--tDr--~G~Rn~EyLS--lg~-D~~pvl~GRTpie~Y~DFMrSFr~~Fa~ 404 (537)
+. ...+.+.+ +|. .|..-.++|. ++. .++-++.|........+.++.|++.|.+
T Consensus 90 ---~~-~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~ 150 (257)
T PF13407_consen 90 ---EA-PDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKE 150 (257)
T ss_dssp ---HH-TTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHH
T ss_pred ---cc-ccccceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhh
Confidence 00 01111111 111 1333334443 111 2334456666678888899999999988
No 288
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.48 E-value=1.3e+02 Score=29.71 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc--chHHHHHHHHHHHcCCcEEE
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA--WSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD--WSgY~~L~~mvr~~GLKv~v 325 (537)
+.++..|+..+.+|++.|.+.-.....+...+..++ ...++++++++++.|+++.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 458889999999999988753211001111111111 24567889999999987766
No 289
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.46 E-value=2.3e+02 Score=28.34 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHc
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~ 319 (537)
+++.+.+..+.++++|+++|++++.=-.+.....-..+.....++++.+++.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~ 160 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA 160 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc
Confidence 6688889999999999999999986221111111234677788888888876
No 290
>PRK03195 hypothetical protein; Provisional
Probab=25.41 E-value=1.4e+02 Score=29.54 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccceeEEEeccCCCccccCCCCCCCCC-cccCCCcc
Q 009335 389 EVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGE 442 (537)
Q Consensus 389 e~Y~DFMrSFr~~Fa~~l~~~vI~eI~VGLGPaGELRYPSYp~~~G-W~~PGiGE 442 (537)
+.-+-....+.+.+.++++.++|.+|-| +||.+ ||. ..| |+++|.|-
T Consensus 134 teL~~~k~~Ii~rLN~~lG~~vV~~I~i-~GP~~----psw--~~g~~~v~grGp 181 (186)
T PRK03195 134 TQLRMMQAQLLAKIAAAVGDGVVTSLKI-TGPAA----PSW--RKGPRHIAGRGP 181 (186)
T ss_pred HHHHhhHHHHHHHHHHHhCccceeEEEE-eCCCC----CCC--CcCCCcCCCCCC
Confidence 3344455678888999999999999977 78864 444 244 88898874
No 291
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.29 E-value=1.9e+02 Score=29.29 Aligned_cols=59 Identities=15% Similarity=0.020 Sum_probs=40.0
Q ss_pred cCHHHHHHHHHHHHHcC-CCEEEEeeeeeeeccC-CCCcccchHHHHHHHHHHHc-CCcEEE
Q 009335 267 VDPELIRQEISHMKALN-VDGVIVNCWWGIVEGW-NPQKYAWSGYRELFNIIREF-NLKVQV 325 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aG-VdGV~VDVWWGiVE~~-~p~~YDWSgY~~L~~mvr~~-GLKv~v 325 (537)
.+++.|.+-.+.++++| +|+|++++..=..... ..-..+-..+.++++.++++ .+.|.+
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~v 162 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIV 162 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999 9999998864322210 01112446688889999887 444433
No 292
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=25.21 E-value=1.7e+02 Score=30.55 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=46.1
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc---ch---HHHHHHHHHHHcCCc-----EEEEEeee
Q 009335 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK-----VQVVMAFH 330 (537)
Q Consensus 263 ~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD---WS---gY~~L~~mvr~~GLK-----v~vvmSFH 330 (537)
+++|..+...+.-.++|+ .|+-.|++|||=|--+...|-.|. +. .++++++.|++..++ |++.|--|
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg~~~~~eP~V~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlslE~H 100 (257)
T cd08626 23 GRQFGGKSSVEMYRQVLL-AGCRCIELDCWDGKGEDQEPIITHGKAMCTDILFKDVIQAIKDTAFVTSDYPVILSFENH 100 (257)
T ss_pred CCcccCCccHHHHHHHHH-cCCcEEEEEecCCCCCCCCCEEeeCCCCccCcCHHHHHHHHHHHhcccCCCCEEEEEecc
Confidence 356777777788888885 799999999997742222233322 21 378999999988776 56655556
No 293
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.13 E-value=1.2e+02 Score=29.47 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccc--hHHHHHHHHHHHcCCcEEEEEeee
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW--SGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDW--SgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
+.++.-|+..+.+|++.|.+.-+-...++..+..+++ ..++++.+++.+.|+++.+ -+|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l--E~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV--EIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE--Eec
Confidence 5678888999999999998732210111111111111 3578889999999987765 555
No 294
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=25.07 E-value=4.8e+02 Score=23.03 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+++-++..|+.|++.|.+--- .++.++.+..+.+++.||++.+
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH-----------~~~~~~~~~~~~~~~~~i~vi~ 60 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDH-----------NNFAGYPDFYKEAKKKGIKVIP 60 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE-----------TTTTTHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEcCC-----------cccccchHHHHHHHhcCCceEE
Confidence 4566678899999998877543 4677789999999999999876
No 295
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.01 E-value=2e+02 Score=31.17 Aligned_cols=52 Identities=6% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCC-------CCcccchHHHHHHHHHHHcCCc-EEEEEee
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWN-------PQKYAWSGYRELFNIIREFNLK-VQVVMAF 329 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~-------p~~YDWSgY~~L~~mvr~~GLK-v~vvmSF 329 (537)
++.|+.||++||+.|.|.| |... -+.++.....+.+++++++|++ |.+-|-|
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-----QS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~ 211 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-----QDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIY 211 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-----CCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEE
No 296
>PRK05926 hypothetical protein; Provisional
Probab=24.94 E-value=72 Score=34.13 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCEEEEe---ee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEee
Q 009335 272 IRQEISHMKALNVDGVIVN---CW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~VD---VW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSF 329 (537)
.++.|+.||+||++.+-.. +. .-+-+.-.|++-.+..+.+.+++++++||++..-|=|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~ 229 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLC 229 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEE
Confidence 4777999999999876543 11 2222223466767778899999999999999875554
No 297
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=24.89 E-value=2.1e+02 Score=27.14 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
+++-++.++++||+.|.+--+. +..++.+++++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 5566778899999988743221 245677888899999 999988988
No 298
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=24.74 E-value=1.3e+02 Score=31.42 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=45.4
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc---cch---HHHHHHHHHHHcCCc-----EEEEEeeec
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK-----VQVVMAFHE 331 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y---DWS---gY~~L~~mvr~~GLK-----v~vvmSFHq 331 (537)
++|.-....+.-.++|+ .|+-.|++|||=|--...+|-.| .+. .++++++.|++...+ |++.|--|.
T Consensus 24 ~Ql~g~ss~e~y~~aL~-~GcRcvElD~wdG~~~~~ePiV~HG~tlts~i~f~dv~~~I~~~AF~~S~yPvIlSlE~Hc 101 (258)
T cd08623 24 GQLAGNSSVEMYRQVLL-SGCRCVELDCWKGRTAEEEPVITHGFTMTTEISFKEVIEAIAECAFKTSPFPILLSFENHV 101 (258)
T ss_pred CccCCccCHHHHHHHHH-cCCCEEEEEeeCCCCCCCCCEEeeCCCcccCcCHHHHHHHHHHHhccCCCCCEEEEehhcC
Confidence 56666677778888885 79999999999774211123322 233 378999999998876 455555563
No 299
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=24.72 E-value=1.1e+02 Score=34.48 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEEeee--eeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 273 RQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVW--WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+.|+.||++|++-|.+.|= --.|-..--..++.....+.+++++++|++|.+
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~ 260 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVY 260 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 57789999999999999874 111111234557888899999999999998655
No 300
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=24.67 E-value=1.3e+02 Score=33.18 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeee
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFH 330 (537)
.+.|.+..+.++++|.++|||++++. -|+....|.+...+.+|-|+.=-++|
T Consensus 212 ~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ih~HrA~~ 263 (414)
T cd08206 212 PEEMIKRAEFAKELGSVIVMVDGVTA----------GWTAIQSARRWCPDNGLALHAHRAGH 263 (414)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeeecc----------cHHHHHHHHHhccccCeEEEEccccc
Confidence 68999999999999999999999865 35555555555445555554433333
No 301
>PRK03906 mannonate dehydratase; Provisional
Probab=24.31 E-value=1.3e+02 Score=32.72 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHcCCcEEE
Q 009335 307 SGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 307 SgY~~L~~mvr~~GLKv~v 325 (537)
..|++.+.-+-++|+|++-
T Consensus 83 e~y~~sirnlg~~GI~~ic 101 (385)
T PRK03906 83 ENYKQTLRNLAAAGIKVVC 101 (385)
T ss_pred HHHHHHHHHHHhcCCcEEE
Confidence 3444444444455555443
No 302
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=24.24 E-value=1.3e+02 Score=31.20 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCC-EEEEeeeee---eeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 273 RQEISHMKALNVD-GVIVNCWWG---IVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 273 ~~dL~~LK~aGVd-GV~VDVWWG---iVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
.+.|+.||++|++ .|.+.+==+ +.+..--..++...+.+.+++++++|+++.+.|=
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 5677889999998 788875311 1110012345778899999999999999877544
No 303
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=24.16 E-value=1.9e+02 Score=33.10 Aligned_cols=52 Identities=4% Similarity=0.027 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSF 329 (537)
..+.++.+++..+++||+.|.|-.-...+ .-....++.++++|+.+++.+|+
T Consensus 89 pddvv~~~v~~a~~~Gvd~irif~~lnd~----------~n~~~~i~~ak~~G~~v~~~i~~ 140 (582)
T TIGR01108 89 ADDVVERFVKKAVENGMDVFRIFDALNDP----------RNLQAAIQAAKKHGAHAQGTISY 140 (582)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecCcH----------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 34567777777777788777766554433 23667777777778777776553
No 304
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.01 E-value=45 Score=34.58 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc--chHHHHH-HHHHHHcCCcEEEEEeeec
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA--WSGYREL-FNIIREFNLKVQVVMAFHE 331 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD--WSgY~~L-~~mvr~~GLKv~vvmSFHq 331 (537)
..||.+|+..||..|-.--+|= ++...++.|- |+....+ ...+.++|||+.+-+..|-
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHP 74 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDP-YPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHP 74 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCC-CCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCC
Confidence 4689999999999998888887 6665666552 3333333 4457899999999888883
No 305
>PTZ00333 triosephosphate isomerase; Provisional
Probab=23.90 E-value=1.7e+02 Score=29.96 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=32.8
Q ss_pred HHHHHHcCCCEEEEeeeeeeeccCCCCcccc----hHHHHHHHHHHHcCCcEEE
Q 009335 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAW----SGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 276 L~~LK~aGVdGV~VDVWWGiVE~~~p~~YDW----SgY~~L~~mvr~~GLKv~v 325 (537)
-.+||++|+++|.|.- ++.+=.| .--.+-++.+.++||+.++
T Consensus 82 ~~mL~d~G~~~viiGH--------SERR~~f~Etd~~I~~Kv~~al~~gl~pIl 127 (255)
T PTZ00333 82 AEMLKDLGINWTILGH--------SERRQYFGETNEIVAQKVKNALENGLKVIL 127 (255)
T ss_pred HHHHHHcCCCEEEECc--------ccccCcCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 4789999999999974 4555566 5566667788899998888
No 306
>PRK05927 hypothetical protein; Provisional
Probab=23.90 E-value=74 Score=33.74 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCCEEE---Eeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEE
Q 009335 270 ELIRQEISHMKALNVDGVI---VNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~---VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvm 327 (537)
...+++|+.||++|++.++ ..+. --+-..-.|+++......+.++.+++.||++..=|
T Consensus 144 ~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~ 205 (350)
T PRK05927 144 ISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATM 205 (350)
T ss_pred CCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCcee
Confidence 3467899999999997444 3333 22223345888888889999999999999986533
No 307
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=23.81 E-value=78 Score=30.48 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEeee
Q 009335 270 ELIRQEISHMKALNVDGVIVNCW 292 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVW 292 (537)
+.+++.|+.|+++||+||+|.-.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~~ 24 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSNP 24 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcCH
Confidence 57899999999999999999765
No 308
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=23.78 E-value=4e+02 Score=28.04 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCCCcCCCCCcccchhhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHHcC-CC
Q 009335 207 RGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALN-VD 285 (537)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~dL~~LK~aG-Vd 285 (537)
++++|+++ ..|..-..++ +++.+... -...++|-|=|..+-...++ .+.+....-++.|.++| ||
T Consensus 179 RtD~yGGs--lenR~r~~~e---iv~~ir~~-------vg~~~~v~iRl~~~~~~~~G--~~~~e~~~~~~~l~~~G~vd 244 (343)
T cd04734 179 RTDEYGGS--LENRMRFLLE---VLAAVRAA-------VGPDFIVGIRISGDEDTEGG--LSPDEALEIAARLAAEGLID 244 (343)
T ss_pred CCCcCCCC--HHHHhHHHHH---HHHHHHHH-------cCCCCeEEEEeehhhccCCC--CCHHHHHHHHHHHHhcCCCC
Q ss_pred EEEEeeeeee-----eccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCC------------CCCcccccChhH
Q 009335 286 GVIVNCWWGI-----VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAND------------SGDAWISLPQWV 348 (537)
Q Consensus 286 GV~VDVWWGi-----VE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNV------------GDt~~IpLP~WV 348 (537)
.|.|-.++-. .....+..|.=....++++.+++. +++.++.. |++ |+.--|.+=.-+
T Consensus 245 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~ipvi~~-----G~i~~~~~~~~~l~~~~~D~V~~gR~~ 318 (343)
T cd04734 245 YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-VDLPVFHA-----GRIRDPAEAEQALAAGHADMVGMTRAH 318 (343)
T ss_pred EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-cCCCEEee-----CCCCCHHHHHHHHHcCCCCeeeecHHh
Q ss_pred HhhhccCCCeEeeCCCCC--ccccccc
Q 009335 349 MEIGKGNQDIFFTDREGR--RNTECLS 373 (537)
Q Consensus 349 ~e~g~~~PDI~ytDr~G~--Rn~EyLS 373 (537)
+ .|||++-.-.+|+ .-..|++
T Consensus 319 l----adP~l~~k~~~g~~~~i~~C~~ 341 (343)
T cd04734 319 I----ADPHLVAKAREGREDDIRPCIG 341 (343)
T ss_pred H----hCccHHHHHHcCCccCcCcCcC
No 309
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.67 E-value=4.9e+02 Score=27.84 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeeeeee--cc--CCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 272 IRQEISHMKALNVDGVIVNCWWGIV--EG--WNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~VDVWWGiV--E~--~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
..++++.+.++|++.|.+-+--..+ +. .......+.-..+.++.+++.|++|.+
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~ 134 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF 134 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3567888889999987776542211 10 012344567788899999999998877
No 310
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=23.57 E-value=1.4e+02 Score=30.97 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=41.1
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeeeee-eeccCCCCcc---cch---HHHHHHHHHHHcCCc-----EEEEEeeec
Q 009335 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWG-IVEGWNPQKY---AWS---GYRELFNIIREFNLK-----VQVVMAFHE 331 (537)
Q Consensus 264 ~~l~~~~al~~dL~~LK~aGVdGV~VDVWWG-iVE~~~p~~Y---DWS---gY~~L~~mvr~~GLK-----v~vvmSFHq 331 (537)
++|.-....+.-.++|+ .|+-.|++|||=| .=| |-.| .+. .++++++.|++...+ |++.|--|.
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~Wdg~~~e---P~V~HG~t~ts~i~f~dv~~~I~~~AF~~s~yPvIlslE~Hc 99 (254)
T cd08628 24 DQLRSESSTEAYIRCLR-MGCRCIELDCWDGPDGK---PIIYHGWTRTTKIKFDDVVQAIKDHAFVTSEYPVILSIEEHC 99 (254)
T ss_pred CeeecCCCHHHHHHHHH-cCCcEEEEEeecCCCCC---eEEeeCCCccCCcCHHHHHHHHHHHhccCCCCCEEEEEeccC
Confidence 34444455566677774 7999999999944 223 3333 222 378999999988664 455555563
No 311
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.41 E-value=1.6e+02 Score=26.20 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCEEEEeee-ee--eeccCCCCcccchHHHHHHHHHHHcC-CcEEEEE
Q 009335 273 RQEISHMKALNVDGVIVNCW-WG--IVEGWNPQKYAWSGYRELFNIIREFN-LKVQVVM 327 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVW-WG--iVE~~~p~~YDWSgY~~L~~mvr~~G-LKv~vvm 327 (537)
...++.|+.+|++.|.+++= +. +.+. -.....++.+.+.++.++++| +++...+
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDEVLKA-INRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHH-hcCCCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 45678899999998777654 32 1111 123346789999999999999 6665533
No 312
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=23.22 E-value=1.2e+02 Score=29.91 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=36.6
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 265 QLVDPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 265 ~l~~~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+.++..++. .+++-.+|.|.+++- +|=+. ..++++++++++|+++.+
T Consensus 188 ~~~~~~~~~~---~i~~~~~d~v~~k~~~~GGi~----------~~~~~~~~A~~~gi~~~~ 236 (265)
T cd03315 188 SAFTPHDAFR---ELALGAADAVNIKTAKTGGLT----------KAQRVLAVAEALGLPVMV 236 (265)
T ss_pred CCCCHHHHHH---HHHhCCCCEEEEecccccCHH----------HHHHHHHHHHHcCCcEEe
Confidence 3555555443 556778999999987 56443 389999999999999987
No 313
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=23.19 E-value=1.5e+02 Score=30.21 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeee-eeeeccCCCCcccchHHHHHHHHHH----HcCCcEEE
Q 009335 271 LIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIR----EFNLKVQV 325 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p~~YDWSgY~~L~~mvr----~~GLKv~v 325 (537)
-++.-++.+++.|.|||.||+| +-..+. .| =|...|.++++.++ ..|+++.+
T Consensus 96 fi~s~~~~~~~~~~DGidiD~we~p~~~~-~~--~d~~~~~~~l~el~~~l~~~~~~l~~ 152 (318)
T cd02876 96 LIKLLVTTAKKNHFDGIVLEVWSQLAAYG-VP--DKRKELIQLVIHLGETLHSANLKLIL 152 (318)
T ss_pred HHHHHHHHHHHcCCCcEEEechhhhcccC-CH--HHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 4455567789999999999976 322221 11 14445555555554 45666665
No 314
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.18 E-value=1.2e+02 Score=29.52 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccc--chHHHHHHHHHHHcCCcEEE
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA--WSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YD--WSgY~~L~~mvr~~GLKv~v 325 (537)
+.++..|+..+.+|+..|.+.-+..-........+. -..+++|.+++.+.|+++.+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 577788899999999999774432211111111222 23588899999999987754
No 315
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=23.16 E-value=1.7e+02 Score=31.63 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=39.8
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeee---eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeec
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCW---WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVW---WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHq 331 (537)
.+...+..--|+|.+.||+||.|+-= --++.+ . .-..+.+|++..|..|||+-+.+.|-.
T Consensus 54 ~~~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~---~--~l~~v~~lAdvfRpYGIkv~LSvnFas 116 (328)
T PF07488_consen 54 RDLTRYRDYARLLASIGINGVVLNNVNANPKLLTP---E--YLDKVARLADVFRPYGIKVYLSVNFAS 116 (328)
T ss_dssp S--HHHHHHHHHHHHTT--EEE-S-SS--CGGGST---T--THHHHHHHHHHHHHTT-EEEEEE-TTH
T ss_pred cchhHHHHHHHHHhhcCCceEEecccccChhhcCH---H--HHHHHHHHHHHHhhcCCEEEEEeeccC
Confidence 35578899999999999999998632 222222 1 345688999999999999999888753
No 316
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=23.12 E-value=1.5e+02 Score=27.97 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+++++-.+.+++.|+-||.+....+-.-.. +-..++.+++.+.+.|+-|.+
T Consensus 84 ~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~pv~~ 135 (273)
T PF04909_consen 84 EDAVEELERALQELGFRGVKLHPDLGGFDPD-----DPRLDDPIFEAAEELGLPVLI 135 (273)
T ss_dssp HHHHHHHHHHHHTTTESEEEEESSETTCCTT-----SGHCHHHHHHHHHHHT-EEEE
T ss_pred hhHHHHHHHhccccceeeeEecCCCCccccc-----cHHHHHHHHHHHHhhccceee
Confidence 4677777777889999999988865433332 222237999999999975543
No 317
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=23.09 E-value=1.3e+02 Score=29.64 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=29.3
Q ss_pred CCCCcccchHHHHHHHHHHHc-CCcEEEEEeeeccCCCCCC
Q 009335 299 WNPQKYAWSGYRELFNIIREF-NLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 299 ~~p~~YDWSgY~~L~~mvr~~-GLKv~vvmSFHqCGGNVGD 338 (537)
+.++.++.+..+++++.+++. |.++++| |. ||+.|+
T Consensus 15 ~~~~~~~~~~l~~l~~~l~~l~g~~vvlV---hG-gg~~~~ 51 (252)
T cd04241 15 DRPETIREENLERIARELAEAIDEKLVLV---HG-GGSFGH 51 (252)
T ss_pred CCCCccCHHHHHHHHHHHHhccCCCEEEE---EC-CCcccC
Confidence 357789999999999999999 9999986 64 556554
No 318
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=22.98 E-value=1.3e+02 Score=31.59 Aligned_cols=54 Identities=6% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeee--eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 273 RQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVW--WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
.+.|+.||++|++.|.|.|= --.+=..-.+.+++....+.+++++++|++.+-+
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~ 155 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISI 155 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEE
No 319
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=22.92 E-value=1.5e+02 Score=32.58 Aligned_cols=18 Identities=11% Similarity=0.349 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHcCCcEEE
Q 009335 308 GYRELFNIIREFNLKVQV 325 (537)
Q Consensus 308 gY~~L~~mvr~~GLKv~v 325 (537)
.|++.+.-+-++|+|++-
T Consensus 84 nyk~~irNla~~GI~vic 101 (394)
T TIGR00695 84 NYKQTLRNLAQCGIKTVC 101 (394)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 344444455555555443
No 320
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=22.52 E-value=1.9e+02 Score=29.33 Aligned_cols=47 Identities=13% Similarity=-0.051 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
...+||++||++|.|.-. |+...-.=.=.--.+-+..+.++||+.++
T Consensus 76 S~~mL~d~G~~~viiGHS----ERR~~f~Et~~~i~~Kv~~a~~~gl~pIv 122 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHS----ERRQYFGETDEDVAKKVKAALEAGLTPIL 122 (242)
T ss_pred CHHHHHHcCCCEEEeCcc----cccCcCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 457899999999999753 32111001223355556678899999888
No 321
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=22.33 E-value=4.2e+02 Score=24.99 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=38.5
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
.+.+...+.++.|...+||||-+... +.....++++.+++.|+.++.+.+
T Consensus 44 ~~~~~~~~~~~~~~~~~vdgiIi~~~------------~~~~~~~~l~~~~~~~iPvv~~~~ 93 (272)
T cd06300 44 GDVAQQIADIRNLIAQGVDAIIINPA------------SPTALNPVIEEACEAGIPVVSFDG 93 (272)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC------------ChhhhHHHHHHHHHCCCeEEEEec
Confidence 35677889999999999999998531 223356778889999999888765
No 322
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=22.32 E-value=2.6e+02 Score=29.35 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGN 335 (537)
..+.+.+.|+.|++.|+..+.- .-+|-+ +|-..-.++++++++.|.+.+-|+.||.+|.+
T Consensus 206 ~~~~vl~~L~~l~~~~~~~~ir---~tlv~g-----~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~ 265 (322)
T PRK13762 206 AWERILETLELLPSKKTRTVIR---ITLVKG-----YNMHDPEGFAKLIERANPDFVEVKAYMHVGYS 265 (322)
T ss_pred cHHHHHHHHHHHHhCCCCEEEE---EEEECC-----cCccHHHHHHHHHHHcCCCEEEEECCeECCCc
Confidence 5678888899999988643221 222322 23333448888999999999999999999844
No 323
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=22.28 E-value=1.9e+02 Score=32.59 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeecc-CC--CCccc--------chHHHHHHHHHHHcCCcEEEEEe
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEG-WN--PQKYA--------WSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~-~~--p~~YD--------WSgY~~L~~mvr~~GLKv~vvmS 328 (537)
+-+.+.+..-|..+|++|+++|=+.=.=...|+ .+ +..|. -.-+++|+..+.+.|||+++-+-
T Consensus 36 ~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 36 VGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred ccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 457899999999999999999876544443333 00 11111 12367899999999999988544
No 324
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=22.16 E-value=1.1e+02 Score=31.53 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=35.4
Q ss_pred HHHHHHcCCCEEEEeeeeeeeccCCCCc---ccchHHHHHHHHHHHcCCcEEE
Q 009335 276 ISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 276 L~~LK~aGVdGV~VDVWWGiVE~~~p~~---YDWSgY~~L~~mvr~~GLKv~v 325 (537)
+..++++|++|||+|-+ .+.+..- +++....+.++.++++||+.-+
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aL 185 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMCAL 185 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchhhc
Confidence 46779999999999976 3333333 4567778889999999999866
No 325
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=22.14 E-value=3.1e+02 Score=28.37 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhH
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV 348 (537)
++.++..++.||+.|.+.|.-+..|..-.- --.=+-.--++|.+++.+-.+|.+. | +.| |+.++==||.-=
T Consensus 17 ~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~--~ag~~~~Ra~dL~~a~~Dp~i~aI~--~---~rG--G~g~~rlL~~lD 87 (308)
T cd07062 17 PHRLERAKKRLENLGFEVVEGPNALKGDKY--LSASPEERAEELMAAFADPSIKAII--P---TIG--GDDSNELLPYLD 87 (308)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccccccc--ccCCHHHHHHHHHHHhcCCCCCEEE--E---CCc--ccCHhhhhhhcC
Confidence 799999999999999999998887652110 0111445578899999999988887 4 223 444443356544
Q ss_pred HhhhccCCCeE
Q 009335 349 MEIGKGNQDIF 359 (537)
Q Consensus 349 ~e~g~~~PDI~ 359 (537)
++..+++|-+|
T Consensus 88 ~~~i~~~PK~f 98 (308)
T cd07062 88 YELIKKNPKIF 98 (308)
T ss_pred HHHHhhCCCEE
Confidence 44457888776
No 326
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=22.07 E-value=1.7e+02 Score=24.94 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeec---cCCCCcccchHHHHHHHHHHHcCCc
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVE---GWNPQKYAWSGYRELFNIIREFNLK 322 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE---~~~p~~YDWSgY~~L~~mvr~~GLK 322 (537)
.+.|+.|+++|++-|.+.+-=..=+ ..--...+|.-..+.++.++++|++
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIP 142 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCC
Confidence 7889999999988888877522111 1001567899999999999999999
No 327
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=21.89 E-value=6.3e+02 Score=25.12 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCC--cEEE
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNL--KVQV 325 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GL--Kv~v 325 (537)
..+...+..||+++.|.|.+-. ++ ...-.++.-+++.|+ ++.+
T Consensus 173 ~d~~~~i~~l~~~~pd~v~~~~-~~------------~~~~~~~~~~~~~G~~~~~~~ 217 (333)
T cd06359 173 LDFSAELAQIRAAKPDAVFVFL-PG------------GMGVNFVKQYRQAGLKKDIPL 217 (333)
T ss_pred cchHHHHHHHHhCCCCEEEEEc-cC------------ccHHHHHHHHHHcCcccCCee
Confidence 3567788999999999998721 21 115677888999999 6554
No 328
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=21.85 E-value=3.9e+02 Score=27.94 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=50.6
Q ss_pred EEEeeceeecCC-----CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 252 YVMLANHVINNF-----CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 252 yVMLPLd~V~~~-----~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
.|.+.+.++++. |...+.+...+.++.++++|++.|.+|+=.|+ |++ +-..+.+.++.+.+.|...+-+
T Consensus 112 rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~Gl-----Pgq-t~e~~~~~l~~~~~l~~~~is~ 185 (374)
T PRK05799 112 RLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGL-----PNQ-TLEDWKETLEKVVELNPEHISC 185 (374)
T ss_pred EEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----CCC-CHHHHHHHHHHHHhcCCCEEEE
Confidence 455666666532 44446778888999999999998999988884 333 5566788899999888775543
No 329
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=21.85 E-value=98 Score=32.81 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
+.+.|.+..+..+++|.++|||++... -|+....+.+..++.++-|+.
T Consensus 93 ~~~em~~ra~~a~~~G~~~vmv~~~~~----------G~~~~~~l~~~~~~~~~~ih~ 140 (309)
T PF00016_consen 93 TPDEMIERAEYAKEAGANAVMVNVLTA----------GFSALQSLAEDARDNGLPIHA 140 (309)
T ss_dssp SHHHHHHHHHHHHHHTGSEEEEEHHHH----------CHHHHHHHHHHHHHHTSEEEE
T ss_pred cHHHHHHhhhhhhhhccchhhcccccc----------cccccchhhhhhcccceeeee
Confidence 358999999999999999999987654 577788888888888844433
No 330
>PRK15492 triosephosphate isomerase; Provisional
Probab=21.80 E-value=1.6e+02 Score=30.30 Aligned_cols=43 Identities=5% Similarity=0.076 Sum_probs=32.5
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHH----HHHHHHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRE----LFNIIREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~----L~~mvr~~GLKv~v 325 (537)
.-.+||++|+++|.|.- ++.+=.|..=++ -+..+.++||+.++
T Consensus 86 Sa~mLkd~G~~~viiGH--------SERR~~f~Etd~~v~~Kv~~a~~~gl~pIv 132 (260)
T PRK15492 86 SPLMLKEIGTQLVMIGH--------SERRHKFGETDQEENAKVLAALKHDFTTLL 132 (260)
T ss_pred CHHHHHHcCCCEEEECc--------cccccccCcchHHHHHHHHHHHHCCCEEEE
Confidence 35689999999999974 444445555666 56678889999888
No 331
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.73 E-value=1e+03 Score=26.85 Aligned_cols=125 Identities=18% Similarity=0.323 Sum_probs=68.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEE-eee---eeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIV-NCW---WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~V-DVW---WGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~ 341 (537)
-.+++.+.++++.|++.|+.-|++ +.. ||. ...+.. ..+.+|++.|.+.|++.+-+++.|- +
T Consensus 240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~--d~~~~~---~~l~~Ll~~I~~~~i~~ir~~s~~P------~--- 305 (509)
T PRK14327 240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGK--DFEDIE---YGLGDLMDEIRKIDIPRVRFTTSHP------R--- 305 (509)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcc--cccccc---hHHHHHHHHHHhCCCceEEEeecCc------c---
Confidence 347899999999999999876654 222 331 000001 1367889999888886555444331 0
Q ss_pred cccChhHHhhhccCCCeEeeCCCCCcccccccccccc--ccc---cCCCcchHHHHHHHHHHHHHHhhhhhccceeEEEe
Q 009335 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDK--ERV---LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEI 416 (537)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~--~pv---l~GRTpie~Y~DFMrSFr~~Fa~~l~~~vI~eI~V 416 (537)
.+..-+++..++. |.. -.+|++++.. ..| .+-++..+.|.+..+.+++.+-++ .+-++|-|
T Consensus 306 -~i~deli~~m~~~---------g~~-~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i---~i~tdiIv 371 (509)
T PRK14327 306 -DFDDHLIEVLAKG---------GNL-VEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNV---ALTTDIIV 371 (509)
T ss_pred -cCCHHHHHHHHhc---------CCc-cceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCc---EEeeeEEE
Confidence 1233344333332 221 1244444321 122 233455789999999998875432 13346666
Q ss_pred cc
Q 009335 417 GL 418 (537)
Q Consensus 417 GL 418 (537)
|+
T Consensus 372 Gf 373 (509)
T PRK14327 372 GF 373 (509)
T ss_pred eC
Confidence 64
No 332
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=21.73 E-value=5.6e+02 Score=25.34 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEE
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvm 327 (537)
.+...+..||..+.+.|.+..| .+ ....+++.+++.|++..+++
T Consensus 184 d~~~~v~~l~~~~~d~i~~~~~---~~----------~~~~~~~~~~~~g~~~~~~~ 227 (345)
T cd06338 184 DLSPLISKAKAAGPDAVVVAGH---FP----------DAVLLVRQMKELGYNPKALY 227 (345)
T ss_pred chHHHHHHHHhcCCCEEEECCc---ch----------hHHHHHHHHHHcCCCCCEEE
Confidence 4777888888888888765442 11 25667788888888866543
No 333
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.70 E-value=2.2e+02 Score=28.23 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcC
Q 009335 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFN 320 (537)
Q Consensus 263 ~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~G 320 (537)
+++ .|++.+++.++.|.+.||+||.+.--=| .--...++.++++++.+.+..
T Consensus 12 dg~-iD~~~~~~~i~~l~~~Gv~gi~~~GstG-----E~~~ls~~Er~~l~~~~~~~~ 63 (281)
T cd00408 12 DGE-VDLDALRRLVEFLIEAGVDGLVVLGTTG-----EAPTLTDEERKEVIEAVVEAV 63 (281)
T ss_pred CCC-cCHHHHHHHHHHHHHcCCCEEEECCCCc-----ccccCCHHHHHHHHHHHHHHh
Confidence 443 5999999999999999999997654322 122346778999999887763
No 334
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=21.69 E-value=2.6e+02 Score=21.88 Aligned_cols=55 Identities=7% Similarity=0.023 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
.+..|.+=+..|.++|++-..+-+.= .+...-=+++..-.+++.+.++++|+++.
T Consensus 11 ~pG~La~v~~~l~~~~inI~~i~~~~--~~~~~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 11 KPGRLAAVTEILSEAGINIRALSIAD--TSEFGILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CCChHHHHHHHHHHCCCCEEEEEEEe--cCCCCEEEEEECCHHHHHHHHHHCCCEEE
Confidence 46788999999999999998887621 11112223345556689999999999875
No 335
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=21.65 E-value=2.1e+02 Score=26.70 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+..|++.||..|-+|+=.-+.-. ....-|.+..++++.+++.|+++.+
T Consensus 16 ~~~~~~~~~v~~vv~D~Dgtl~~~--~~~~~~pgv~e~L~~Lk~~g~~l~I 64 (170)
T TIGR01668 16 TIDLLKKVGIKGVVLDKDNTLVYP--DHNEAYPALRDWIEELKAAGRKLLI 64 (170)
T ss_pred CHHHHHHCCCCEEEEecCCccccC--CCCCcChhHHHHHHHHHHcCCEEEE
Confidence 345578899999999975333322 2335577889999999999988755
No 336
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=21.61 E-value=92 Score=32.98 Aligned_cols=85 Identities=14% Similarity=0.234 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHH---HHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccCh
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGY---RELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ 346 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY---~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~ 346 (537)
....+=+.+||++|++.|.=-. .-.||.-+ .++++.+++ +-+. ++++ + .=|.
T Consensus 110 ~~~~~l~~~lk~lGf~~v~et~----------~~ad~~~~e~~~e~i~~~~~-~~~~-p~it----------S---~CP~ 164 (374)
T TIGR02512 110 DVTGKMVAALRKLGFDYVFDTN----------FAADLTIMEEGTELLERLKN-GGKL-PMFT----------S---CCPG 164 (374)
T ss_pred hHHHHHHHHHHHcCCCEEEECc----------HHHHHHHHHHHHHHHHHhhc-CCCC-CeEe----------c---CCHH
Confidence 4566778888999998864322 22355544 444444432 2222 2334 1 2699
Q ss_pred hHHhhhccCCCeEeeCCCCCccccccccccccccccCCCcchHHHHHHHHHH
Q 009335 347 WVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSF 398 (537)
Q Consensus 347 WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~~pvl~GRTpie~Y~DFMrSF 398 (537)
||.=+.+.+|+++ ++|| .=++|++.--.+++..
T Consensus 165 ~v~~iek~~P~li----------~~ls---------~v~SP~~~~g~~iK~~ 197 (374)
T TIGR02512 165 WVNYAEKYYPELL----------PNLS---------SCKSPQQMLGAVIKTY 197 (374)
T ss_pred HHHHHHHHChhhh----------cccc---------CCCChHHHHHHHHHHH
Confidence 9998888899865 3333 2368888877777664
No 337
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.50 E-value=1.8e+02 Score=31.47 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCC-------CCcccchHHHHHHHHHHHcCCcEEE
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWN-------PQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~-------p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+.|+.||++|+..|.+.+ |... ...++...+.+.++.++++|+.+.+
T Consensus 287 ~e~l~~l~~aG~~~v~iGi-----ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~ 341 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY-----ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHG 341 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC-----CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 3567899999999988775 4322 2345777899999999999998875
No 338
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=21.45 E-value=2.9e+02 Score=27.18 Aligned_cols=51 Identities=27% Similarity=0.410 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
+.+.++++.+| .++|.|.|-+=||.--...|. ..-++++..+-++|..+++
T Consensus 171 ~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~p~----~~q~~~a~~lidaGaDiIi 221 (250)
T PF09587_consen 171 ERIKEDIREAR-KKADVVIVSLHWGIEYENYPT----PEQRELARALIDAGADIII 221 (250)
T ss_pred HHHHHHHHHHh-cCCCEEEEEeccCCCCCCCCC----HHHHHHHHHHHHcCCCEEE
Confidence 88999999999 799999999999932222232 3357788888889988888
No 339
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=21.36 E-value=2.5e+02 Score=34.31 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=51.9
Q ss_pred eeecCCCcccCHHHHHHHHHHHHHcCCCEEEEe-eeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 258 HVINNFCQLVDPELIRQEISHMKALNVDGVIVN-CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 258 d~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VD-VWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
|+.-..-.||.-+.|+-.+.+.+++| ..++.- |+=|.+=..+..+|+-.||.+|++.+.++|..+..|
T Consensus 645 DvFRiFDsLNwv~~M~vaidAV~e~g-kv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaI 713 (1149)
T COG1038 645 DVFRIFDSLNWVEQMRVAIDAVREAG-KVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAI 713 (1149)
T ss_pred cEEEeehhhcchhhhhhHHHHHHhcC-CeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEe
Confidence 33333445788899999999999999 444443 556654444788999999999999999999988776
No 340
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=21.32 E-value=1.1e+02 Score=32.30 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCC
Q 009335 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNL 321 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GL 321 (537)
++-++..|++|||-|.++ |||+||.+++|+--.|.
T Consensus 42 ~~~w~~q~~agld~ip~g--------------dfs~YD~vLD~~~~~g~ 76 (310)
T PF08267_consen 42 KEHWQLQKEAGLDLIPVG--------------DFSLYDHVLDTAVLLGA 76 (310)
T ss_dssp HHHHHHHHHTT-SBEEES-----------------SS-HHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCcccCC--------------CCchhhHHHHHHHHhcc
Confidence 345667889999998774 67777777777666554
No 341
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=21.31 E-value=6e+02 Score=24.06 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=42.4
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 009335 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGD 338 (537)
....+.+.+.|+.+.+.||+.| .+.||.- ..+++..+.++++.+.+.|.=+++ + .||-|.
T Consensus 74 ~~~~~~~~~ai~~a~~~~v~Vi--n~S~G~~-----~~~~~~~~~~~~~~a~~~g~l~V~--a----agN~~~ 133 (222)
T cd07492 74 RCNSFVLEKALRACVENDIRIV--NLSLGGP-----GDRDFPLLKELLEYAYKAGGIIVA--A----APNNND 133 (222)
T ss_pred CcCHHHHHHHHHHHHHCCCCEE--EeCCCCC-----CCCcCHHHHHHHHHHHHCCCEEEE--E----CCCCCC
Confidence 3566788899999999999865 4568843 334678889999988887653333 4 456554
No 342
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=21.25 E-value=3.2e+02 Score=27.88 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=59.5
Q ss_pred eecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 009335 259 VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (537)
Q Consensus 259 ~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGD 338 (537)
+|...+.+.+.+.++..++.||+.|++.+.-+.=+..-. --..=+..--++|.+++.+-.+|.+..+. | |+
T Consensus 3 iiapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~--~~a~s~~~Ra~dL~~a~~d~~i~aI~~~r-----G--G~ 73 (282)
T cd07025 3 IVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDG--YLAGTDEERAADLNAAFADPEIKAIWCAR-----G--GY 73 (282)
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhhcC--ccCCCHHHHHHHHHHHhhCCCCCEEEEcC-----C--cC
Confidence 445445555559999999999999999888776543110 00111455678899999999988888333 3 44
Q ss_pred CcccccChhHHhhhccCCCeE
Q 009335 339 DAWISLPQWVMEIGKGNQDIF 359 (537)
Q Consensus 339 t~~IpLP~WV~e~g~~~PDI~ 359 (537)
.++--||..=++.-+++|-+|
T Consensus 74 ga~rlL~~ld~~~~~~~pK~~ 94 (282)
T cd07025 74 GANRLLPYLDYDLIRANPKIF 94 (282)
T ss_pred CHHHhhhhCCHHHHhhCCeEE
Confidence 444345554444456788766
No 343
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.25 E-value=2.1e+02 Score=27.01 Aligned_cols=43 Identities=19% Similarity=0.038 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 275 dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
+++.++++|+|.|.+.+..+. ..-.++++.+++.|+++.+-|.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-----------~~~~~~i~~~~~~g~~~~~~~~ 110 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-----------ATIKGAVKAAKKHGKEVQVDLI 110 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-----------HHHHHHHHHHHHcCCEEEEEec
Confidence 788899999999999876531 2247899999999999998543
No 344
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.24 E-value=81 Score=31.95 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=47.2
Q ss_pred HHHHHHHHH---HcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCC-----CCCCcccc
Q 009335 272 IRQEISHMK---ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN-----DSGDAWIS 343 (537)
Q Consensus 272 l~~dL~~LK---~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGN-----VGDt~~Ip 343 (537)
++.+++.|| ++|++.+..-. -||-..|.++++.+++.|+++-++.++--|..- .-.-|-|.
T Consensus 143 ~~~~~~~L~~K~~aGA~f~iTQ~-----------~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~ 211 (272)
T TIGR00676 143 LEEDIENLKRKVDAGADYAITQL-----------FFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAE 211 (272)
T ss_pred HHHHHHHHHHHHHcCCCeEeecc-----------ccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCC
Confidence 445555554 58998655432 578899999999999999887666554433210 00024588
Q ss_pred cChhHHhhhcc
Q 009335 344 LPQWVMEIGKG 354 (537)
Q Consensus 344 LP~WV~e~g~~ 354 (537)
+|.|+.+..++
T Consensus 212 vP~~~~~~l~~ 222 (272)
T TIGR00676 212 IPAWLVKRLEK 222 (272)
T ss_pred CCHHHHHHHHh
Confidence 99999976544
No 345
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.18 E-value=5.6e+02 Score=25.79 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 271 al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
.+...|+.|+.+++|.|.+..| + . ....+++.+++.|++...+++
T Consensus 187 d~~~~i~~l~~~~~d~v~~~~~-~--~----------~~~~~~~~~~~~G~~~~~~~~ 231 (347)
T cd06340 187 DLTSEVLKLKAANPDAILPASY-T--N----------DAILLVRTMKEQRVEPKAVYS 231 (347)
T ss_pred chHHHHHHHHhcCCCEEEEccc-c--h----------hHHHHHHHHHHcCCCCcEEEe
Confidence 4667788888888888765432 2 1 134567778888887665544
No 346
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=21.08 E-value=87 Score=27.01 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~ 324 (537)
..+.+.+-+...=+.|++.|+.+. ++.- |...|++|.++++++|.++.
T Consensus 68 ~~~~~~~~~~~~L~~G~~VVt~nk--------~ala-~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 68 SSEAVAEYYEKALERGKHVVTANK--------GALA-DEALYEELREAARKNGVRIY 115 (117)
T ss_dssp SCHHHHHHHHHHHHTTCEEEES-H--------HHHH-SHHHHHHHHHHHHHHT-EEE
T ss_pred CchHHHHHHHHHHHCCCeEEEECH--------HHhh-hHHHHHHHHHHHHHcCCEEE
Confidence 346777777777778999999874 5666 88899999999999998875
No 347
>PF11193 DUF2812: Protein of unknown function (DUF2812); InterPro: IPR021359 This is a bacterial family of uncharacterised proteins, however some members of this family are annotated as membrane proteins.
Probab=21.00 E-value=3.8e+02 Score=23.34 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc----c------chHHHHHHHHHHHcCCcEE
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY----A------WSGYRELFNIIREFNLKVQ 324 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~Y----D------WSgY~~L~~mvr~~GLKv~ 324 (537)
+.+..++-|..|.+-|=.-+.+..+.-..|+..|.++ | -....+.+++++++|-+++
T Consensus 2 ~~~~~E~wL~ema~kGw~l~~~~~~~~~F~k~ep~~~~Y~vd~~~~~~~~~~~~y~~~~e~~GW~~v 68 (115)
T PF11193_consen 2 DYDKEEQWLNEMAAKGWHLKKIGGFGYTFEKGEPKDYRYRVDFNDPKSKEEQKEYLEFFEEAGWEYV 68 (115)
T ss_pred ChHHHHHHHHHHHHCCCeEEEecceEEEEEECCCceEEEEEEEccccchhhhHHHHHHHHHCCCEEE
Confidence 4578899999999999999999999777787678776 3 3377899999999999998
No 348
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.86 E-value=2.7e+02 Score=28.48 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 270 ~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
..+..-+..+|..|++++.+...+.++ -.++++.++++||+|.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~Gl~v~~ 266 (293)
T cd08572 223 RSLQAAVNFALAEGLLGVVLHAEDLLK------------NPSLISLVKALGLVLFT 266 (293)
T ss_pred hhHHHHHHHHHHCCCeEEEechHHhhc------------CcHHHHHHHHcCcEEEE
Confidence 346666677788999998776655332 24899999999999988
No 349
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.79 E-value=1.9e+02 Score=30.62 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeee--eeeeccCCCCcccchHHHHHHHHHHHcCCc-EEEEEee
Q 009335 273 RQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNLK-VQVVMAF 329 (537)
Q Consensus 273 ~~dL~~LK~aGVdGV~VDVW--WGiVE~~~p~~YDWSgY~~L~~mvr~~GLK-v~vvmSF 329 (537)
.+.|+.||++||+.|.|.|= =-.+=..--+.++...+.+.+++++++|++ |.+-|-|
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~ 162 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLY 162 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEee
No 350
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.77 E-value=3.3e+02 Score=27.69 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=49.2
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccCh
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ 346 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~ 346 (537)
++-+.+...++..|+.|.. |++.+ .. +. ...++...|.++++.+.++|.+.+- | .||.-+-.|.
T Consensus 115 ~~~~~~~~~i~~ak~~G~~-v~~~i--~~-~~--~~~~~~~~~~~~~~~~~~~Ga~~i~-l---------~DT~G~~~P~ 178 (275)
T cd07937 115 NDVRNLEVAIKAVKKAGKH-VEGAI--CY-TG--SPVHTLEYYVKLAKELEDMGADSIC-I---------KDMAGLLTPY 178 (275)
T ss_pred ChHHHHHHHHHHHHHCCCe-EEEEE--Ee-cC--CCCCCHHHHHHHHHHHHHcCCCEEE-E---------cCCCCCCCHH
Confidence 4568899999999999964 33322 11 11 2578999999999999999988754 2 3787777887
Q ss_pred hHHh
Q 009335 347 WVME 350 (537)
Q Consensus 347 WV~e 350 (537)
=+.+
T Consensus 179 ~v~~ 182 (275)
T cd07937 179 AAYE 182 (275)
T ss_pred HHHH
Confidence 6654
No 351
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.76 E-value=1.2e+02 Score=32.41 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 272 l~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
+.+.|+.++..|+++|-.+. |.++-.... +.. -..++++.++++||+|++
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~--~~~-~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPI-WMLVDPDEN--GKI-VPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred HHHHHHHHHhCCccEecCch-hhccccccc--ccc-CCHHHHHHHHHcCCEEEE
Confidence 44678999899999865543 333322122 222 567899999999999999
No 352
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=20.74 E-value=1e+02 Score=36.02 Aligned_cols=58 Identities=16% Similarity=0.321 Sum_probs=46.1
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CC---------cccchHHHHHHHHHHHcCCcEEE
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN--PQ---------KYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~--p~---------~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
..++.|+++|+.||+.|.+.|+++-+........ |. -|. +.|..++.++++.|++...
T Consensus 69 Vspe~Fe~QL~~Lk~nGY~~VSL~el~~~~~g~~~LP~KaV~LTFDDGy~-sny~~AlPILKkyg~pATf 137 (672)
T PRK14581 69 VRSSALNEQFVWLRDNGYHVVSVDQILAARNGGPTLPDKAVLLTFDDGYS-SFYRRVYPLLKAYKWSAVL 137 (672)
T ss_pred cCHHHHHHHHHHHHHCcCEEecHHHHHHHHhcCCCCCCCeEEEEEEcCCc-chHHHHHHHHHHcCCCEEE
Confidence 4679999999999999999999999876554321 22 222 4689999999999999765
No 353
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=20.70 E-value=1.4e+02 Score=32.60 Aligned_cols=27 Identities=4% Similarity=0.100 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeee
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWG 294 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWG 294 (537)
+.+.|.+..+.++++|.++|||+++|.
T Consensus 202 ~~~em~~ra~~~~~~G~~~~mv~~~~~ 228 (391)
T cd08209 202 PVFTLKEKARRLVEAGANALLFNVFAY 228 (391)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 358899999999999999999998865
No 354
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=20.66 E-value=2.6e+02 Score=30.45 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=59.2
Q ss_pred CCCCCCCCccEEEEeeceeecCC-C--cccC---------HHHHHHHHHHHHHcCCCEEEEeee-eeeeccCCC-Ccccc
Q 009335 241 DDFTGTPYIPVYVMLANHVINNF-C--QLVD---------PELIRQEISHMKALNVDGVIVNCW-WGIVEGWNP-QKYAW 306 (537)
Q Consensus 241 ~~~~~~~~vpVyVMLPLd~V~~~-~--~l~~---------~~al~~dL~~LK~aGVdGV~VDVW-WGiVE~~~p-~~YDW 306 (537)
..+..+.+|++-|.-|....... + ...+ .+.+++.++.|+.+||..|.||.- |++ +| -+|+-
T Consensus 105 ~~~~~~~~VKv~iTGP~tL~~~~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~----~~~~~~~~ 180 (344)
T PRK06052 105 EETGETLEVRVCVTGPTELYLQEFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGI----NPEIQFSD 180 (344)
T ss_pred HhhCCCCCeEEEecCHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCccccc----CCccccCH
Confidence 34445678899999998766421 1 2333 346788889999999999999998 874 33 24666
Q ss_pred hHHHHHHHHH----HHcCCcEEEEEeee
Q 009335 307 SGYRELFNII----REFNLKVQVVMAFH 330 (537)
Q Consensus 307 SgY~~L~~mv----r~~GLKv~vvmSFH 330 (537)
.+-.+.++.+ +..|++++. +.|
T Consensus 181 ~~~i~Al~~a~~~a~~~gvdv~i--~lH 206 (344)
T PRK06052 181 DEIISALTVASTYARKQGADVEI--HLH 206 (344)
T ss_pred HHHHHHHHHHHhhhccCCcceEE--EEe
Confidence 6677777766 456888888 666
No 355
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=20.63 E-value=59 Score=27.18 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCcEEE
Q 009335 309 YRELFNIIREFNLKVQV 325 (537)
Q Consensus 309 Y~~L~~mvr~~GLKv~v 325 (537)
.+++++.++++|+||++
T Consensus 44 ~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 44 VEAALDYARENGLKVVP 60 (78)
T ss_dssp HHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 57889999999999999
No 356
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=20.61 E-value=2.8e+02 Score=28.36 Aligned_cols=52 Identities=27% Similarity=0.398 Sum_probs=39.1
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 267 ~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+.+.+.+.++.++..|+..|.+- | ...| .+++..|.++++.|++.+.++.+
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l~---g---g~~~-~~~~~~~~~i~~~Ik~~~~~i~~ 87 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCIQ---G---GLNP-QLDIEYYEELFRAIKQEFPDVHI 87 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe---c---CCCC-CCCHHHHHHHHHHHHHHCCCceE
Confidence 356788888999999999988773 1 1123 36788899999999999765554
No 357
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.47 E-value=2.6e+02 Score=26.96 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChhH
Q 009335 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (537)
Q Consensus 269 ~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~WV 348 (537)
.+.+.+-++..|+.|.+. .++. | .-..++.+.|.++++.+.+.|.+.+. |+ ||.-+-.|..+
T Consensus 107 ~~~~~~~v~~ak~~g~~v-----~~~~-~--~~~~~~~~~~~~~~~~~~~~g~~~i~-l~---------Dt~G~~~P~~v 168 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEV-----AFGC-E--DASRTDPEELLELAEALAEAGADIIY-LA---------DTVGIMTPEDV 168 (237)
T ss_dssp HHHHHHHHHHHHHTTSEE-----EEEE-T--TTGGSSHHHHHHHHHHHHHHT-SEEE-EE---------ETTS-S-HHHH
T ss_pred HHHHHHHHHHHHhcCCce-----EeCc-c--ccccccHHHHHHHHHHHHHcCCeEEE-ee---------CccCCcCHHHH
Confidence 456677788889999877 2222 2 34578999999999999999999864 44 68888899988
Q ss_pred Hhh
Q 009335 349 MEI 351 (537)
Q Consensus 349 ~e~ 351 (537)
.+.
T Consensus 169 ~~l 171 (237)
T PF00682_consen 169 AEL 171 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 358
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.47 E-value=74 Score=32.45 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=23.7
Q ss_pred cccchHHHHHHHHHHHcCCcEEEEEe
Q 009335 303 KYAWSGYRELFNIIREFNLKVQVVMA 328 (537)
Q Consensus 303 ~YDWSgY~~L~~mvr~~GLKv~vvmS 328 (537)
..+.+..++++..+.++|+.|++|.|
T Consensus 192 ~m~~~~l~~iI~~l~~~g~~VvAivs 217 (236)
T PF12017_consen 192 SMDADILKNIIEKLHEIGYNVVAIVS 217 (236)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 56788899999999999999999888
No 359
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=20.46 E-value=3.1e+02 Score=28.33 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcccccChh
Q 009335 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (537)
Q Consensus 268 ~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSFHqCGGNVGDt~~IpLP~W 347 (537)
+++..+.-++.|++.+||||.+-- .. .-+.+.+++.+.|+.+++|..... +
T Consensus 99 ~~~~e~~~~~~l~~~~vdGiIi~~----~~----------~~~~~~~~l~~~~~P~V~i~~~~~-~-------------- 149 (333)
T COG1609 99 DPEKEREYLETLLQKRVDGLILLG----ER----------PNDSLLELLAAAGIPVVVIDRSPP-G-------------- 149 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec----CC----------CCHHHHHHHHhcCCCEEEEeCCCc-c--------------
Confidence 788999999999999999998854 11 135678888889999999766321 1
Q ss_pred HHhhhccCCCeEeeCCCCC-cccccc-ccccccccccCCCcchHHHHHHHHHHHHHHhhh
Q 009335 348 VMEIGKGNQDIFFTDREGR-RNTECL-SWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDL 405 (537)
Q Consensus 348 V~e~g~~~PDI~ytDr~G~-Rn~EyL-Slg~D~~pvl~GRTpie~Y~DFMrSFr~~Fa~~ 405 (537)
...|-|..=|+.|- .-.++| ..|..++-++.|.......++-...|++.+.+.
T Consensus 150 -----~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~ 204 (333)
T COG1609 150 -----LGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREA 204 (333)
T ss_pred -----CCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHC
Confidence 11122222223322 223444 467777777777765666677777788777763
No 360
>PLN03030 cationic peroxidase; Provisional
Probab=20.40 E-value=77 Score=33.87 Aligned_cols=46 Identities=15% Similarity=0.378 Sum_probs=33.8
Q ss_pred cccccccccCCCcc--hHHHH--------HHHHHHHHHHhhhhhccceeEEEeccCCCcccc
Q 009335 374 WGVDKERVLNGRTG--IEVYF--------DFMRSFRTEFDDLFVAGLICAVEIGLGPSGELK 425 (537)
Q Consensus 374 lg~D~~pvl~GRTp--ie~Y~--------DFMrSFr~~Fa~~l~~~vI~eI~VGLGPaGELR 425 (537)
|..|..-+-.+||- ++.|. .|.+.|...|..+ .+|.|=-|-.||+|
T Consensus 262 L~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKM------g~i~VlTG~~GEIR 317 (324)
T PLN03030 262 LESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKM------SNIGVKTGTNGEIR 317 (324)
T ss_pred cCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHH------ccCCCCCCCCCcee
Confidence 56676555566665 77886 5888888888774 45777789999998
No 361
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.36 E-value=3.7e+02 Score=28.10 Aligned_cols=71 Identities=11% Similarity=0.215 Sum_probs=50.5
Q ss_pred EEEeeceeecCC-----CcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEE
Q 009335 252 YVMLANHVINNF-----CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (537)
Q Consensus 252 yVMLPLd~V~~~-----~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vv 326 (537)
.|.+.+++.++. |...+.+.+.+.++.+|++|++.|.+|.=.|+ |++ +.....+.++.+.+.|.+.+.+
T Consensus 113 risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl-----Pgq-t~~~~~~~l~~~~~l~~~~is~ 186 (360)
T TIGR00539 113 RLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGL-----PLQ-TLNSLKEELKLAKELPINHLSA 186 (360)
T ss_pred EEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCC-----CCC-CHHHHHHHHHHHHccCCCEEEe
Confidence 445555555421 44456788889999999999999999988885 333 5566778888888888876543
Q ss_pred Ee
Q 009335 327 MA 328 (537)
Q Consensus 327 mS 328 (537)
..
T Consensus 187 y~ 188 (360)
T TIGR00539 187 YA 188 (360)
T ss_pred ec
Confidence 33
No 362
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=20.34 E-value=8e+02 Score=26.28 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=61.0
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEE---eee-eeeeccCCCCcccchHHHHHHHHHHHc-CCcEEEEEeeeccCCCCCCCc
Q 009335 266 LVDPELIRQEISHMKALNVDGVIV---NCW-WGIVEGWNPQKYAWSGYRELFNIIREF-NLKVQVVMAFHEYGANDSGDA 340 (537)
Q Consensus 266 l~~~~al~~dL~~LK~aGVdGV~V---DVW-WGiVE~~~p~~YDWSgY~~L~~mvr~~-GLKv~vvmSFHqCGGNVGDt~ 340 (537)
..+++.+.++++.|.+.|+..|.+ +.. ||. + ..+-..+.+|++.+++. |++++-+.+.|..
T Consensus 167 ~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~-----d-~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~-------- 232 (429)
T TIGR00089 167 SRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGK-----D-LKGETNLADLLRELSKIDGIERIRFGSSHPD-------- 232 (429)
T ss_pred CCCHHHHHHHHHHHHHCCCceEEEEeeccccccC-----C-CCCCcCHHHHHHHHhcCCCCCEEEECCCChh--------
Confidence 346889999999999999887654 222 431 0 00012488888888877 7877665443310
Q ss_pred ccccChhHHhhhccCCCeEeeCCCCCcccccccccccc-----ccccCCCcchHHHHHHHHHHHHHH
Q 009335 341 WISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDK-----ERVLNGRTGIEVYFDFMRSFRTEF 402 (537)
Q Consensus 341 ~IpLP~WV~e~g~~~PDI~ytDr~G~Rn~EyLSlg~D~-----~pvl~GRTpie~Y~DFMrSFr~~F 402 (537)
.+..-+++..++.+.+ --+|++|+.. +..++-+...+.|.+.++.+++.+
T Consensus 233 --~i~~ell~~m~~~~~~----------~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~ 287 (429)
T TIGR00089 233 --DVTDDLIELIAENPKV----------CKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKI 287 (429)
T ss_pred --hcCHHHHHHHHhCCCc----------cCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHC
Confidence 1233344333332111 1134443221 111222234788888888888865
No 363
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=20.33 E-value=2.9e+02 Score=28.79 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=39.8
Q ss_pred EeeceeecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 254 MLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 254 MLPLd~V~~~~~l~~~~al~~dL~~LK~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
=||.... + ...+++++-.+.||++|+++|-|.= + ...-++++++.++|+-|.-
T Consensus 82 DmPf~sy---~--~~e~a~~na~rl~~eaGa~aVkiEg----------g----~~~~~~i~~l~~~gIpV~g 134 (263)
T TIGR00222 82 DLPFMSY---A--TPEQALKNAARVMQETGANAVKLEG----------G----EWLVETVQMLTERGVPVVG 134 (263)
T ss_pred CCCcCCC---C--CHHHHHHHHHHHHHHhCCeEEEEcC----------c----HhHHHHHHHHHHCCCCEEE
Confidence 3666532 1 2568999999999999999998742 1 3356778999999998774
No 364
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=20.32 E-value=2.1e+02 Score=28.95 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCEEEEeee---eeeecc-CCCCcccchHHHHHHHHHHHcCCcEEE
Q 009335 274 QEISHMKALNVDGVIVNCW---WGIVEG-WNPQKYAWSGYRELFNIIREFNLKVQV 325 (537)
Q Consensus 274 ~dL~~LK~aGVdGV~VDVW---WGiVE~-~~p~~YDWSgY~~L~~mvr~~GLKv~v 325 (537)
.+++.++.+|++.|.+-+- +-+-+. .......+.-..++++++++.|+++++
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~ 137 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIF 137 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 5677889999999887532 111111 012345677899999999999999877
No 365
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=20.14 E-value=1e+02 Score=32.03 Aligned_cols=64 Identities=13% Similarity=0.303 Sum_probs=44.2
Q ss_pred HHHHHHHHH---HcCCCEEEEeeeeeeeccCCCCcccchHHHHHHHHHHHcCCcEEEEEee-------------eccCCC
Q 009335 272 IRQEISHMK---ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF-------------HEYGAN 335 (537)
Q Consensus 272 l~~dL~~LK---~aGVdGV~VDVWWGiVE~~~p~~YDWSgY~~L~~mvr~~GLKv~vvmSF-------------HqCGGN 335 (537)
++.+|..|| ++|.+.+..- =-||-..|.++++.++++|+.+-++... +-||
T Consensus 162 ~~~dl~~Lk~K~~aGA~~~iTQ-----------~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~G-- 228 (296)
T PRK09432 162 AQADLINLKRKVDAGANRAITQ-----------FFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTN-- 228 (296)
T ss_pred HHHHHHHHHHHHHcCCCeeecc-----------cccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccC--
Confidence 344444554 5899766532 3578889999999999999766554441 2244
Q ss_pred CCCCcccccChhHHhhhcc
Q 009335 336 DSGDAWISLPQWVMEIGKG 354 (537)
Q Consensus 336 VGDt~~IpLP~WV~e~g~~ 354 (537)
|.+|.|+.+..++
T Consensus 229 ------v~vP~~l~~~l~~ 241 (296)
T PRK09432 229 ------VRIPAWMAKMFDG 241 (296)
T ss_pred ------CCCCHHHHHHHHh
Confidence 7899999976554
Done!