BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009341
(537 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55EZ4|INT3_DICDI Integrator complex subunit 3 homolog OS=Dictyostelium discoideum
GN=ints3 PE=3 SV=1
Length = 1520
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 254/408 (62%), Gaps = 8/408 (1%)
Query: 52 AILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKE 111
AIL G + + K L D ALF SLL K++ + + KL D+ + Q++W+ E
Sbjct: 106 AILLGSPQNIALSHQYFKSLTFFTKDSLALFCSLLKKLIADKFQKLNDTPRQQVVWIINE 165
Query: 112 MINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLG--KWDCLLEEEPLVLSSA 169
+I + + + +LR I GG+F+ NL L ++++FL +W L PL++ +
Sbjct: 166 LIATNHQDCESVTSIILRHIYGGNFTSKNLSLSHSMLNMFLTHRQW---LNSRPLLIPTI 222
Query: 170 LYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVP 229
LY FLRL+ DH EI+FC+ +L+ +FQ CL IGRDLIRLLQ L
Sbjct: 223 LYNFLRLIQDHISRPQGLHNPTHLKDEINFCLDLLKNKFQECLVIGRDLIRLLQYLSTKT 282
Query: 230 V-FRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLG 288
+ F +WKDL P+ F PG+ DI Q T + +R++PEME Q+ ++L VK G
Sbjct: 283 IEFEQLWKDLNSKPTTF-APGYYDIIQSMKTPTPKHFLQSRLSPEMELQVLYILKEVKFG 341
Query: 289 SQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQ 348
+QKRYQ WF K+L PE E+LI DIIR+ICC +HP N ++ SDI+PRWA+IGWLLK C+
Sbjct: 342 NQKRYQQWFVTKYLVTPESESLIPDIIRYICCVYHPPNHVLCSDIVPRWAIIGWLLKHCK 401
Query: 349 KNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF-LLVD 407
+ +KL+LF DWL+F+ +D+IMNIEPA+LLM S+ +Y DMT L++F+ L+D
Sbjct: 402 SDAWRNYSKLSLFLDWLYFEPKIDSIMNIEPAILLMAGSVKKYADMTIDLVEFIVGTLLD 461
Query: 408 NYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLR 455
+YD+ RKD I +G+ ++FAT++ KGVVQSL + +L P L E+++
Sbjct: 462 SYDIQRKDAIRQGIHNSFATVLEKGVVQSLSHVFPPDSLGPSLFEKVK 509
>sp|Q7TPD0|INT3_MOUSE Integrator complex subunit 3 OS=Mus musculus GN=Ints3 PE=1 SV=2
Length = 1041
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/438 (38%), Positives = 271/438 (61%), Gaps = 12/438 (2%)
Query: 19 LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDG 78
+S R+A DAL A P ++ ++ + VL EP A+ + L + DG
Sbjct: 65 VSEREANDALN-------AYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDG 117
Query: 79 YALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSD 138
+ ++ + +++ E Y+KL D+ + QL+W+ +E++ +G DG+ ++ ++QI GGD +
Sbjct: 118 MNIVLNKINQLLMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTA 177
Query: 139 GNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEID 198
N+WL ++ + + + +L+ ++++ A+YT+LRL+ DH ++L L+ E+D
Sbjct: 178 KNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLRLIVDH---HGTAQLQTLRQKEVD 233
Query: 199 FCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYH 258
FC+ +LRE+F CL IGRDL+RLLQ++ +P F +WKD++ NP +P F+ I QL
Sbjct: 234 FCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQAL-SPQFTGILQLLQ 292
Query: 259 LRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFI 318
RTS ++ R+TP+MET+L F+ + V+ G QKRYQ WF +++L P+ ++L D+IR+I
Sbjct: 293 SRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYI 352
Query: 319 CCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIE 378
C HPSNE++ SDI+PRWA+IGWLL +C N +NAKLALFYDWLFF D+IMNIE
Sbjct: 353 CGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPEKDSIMNIE 412
Query: 379 PAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLD 438
PA+L+M S+ + +T TLLDF+ ++ N+ + + +GV S+ +V K V+ L
Sbjct: 413 PAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLA 472
Query: 439 VLVSCKTLSPYLKERLRK 456
L L L+ LR+
Sbjct: 473 PLFDNPKLDKELRSMLRE 490
>sp|Q5RE70|INT3_PONAB Integrator complex subunit 3 OS=Pongo abelii GN=INTS3 PE=2 SV=1
Length = 1043
Score = 325 bits (834), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 256/400 (64%), Gaps = 5/400 (1%)
Query: 57 VLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVS 116
+L EP A+ + L + DG + ++ + +++ E Y+KL D+ + QL+W+ +E++
Sbjct: 98 ILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSG 157
Query: 117 AVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRL 176
+G DG+ ++ ++QI GGD + N+WL ++ + + + +L+ ++++ A+YT+LRL
Sbjct: 158 VLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLRL 216
Query: 177 LADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWK 236
+ DH ++L L+ E+DFC+ +LRE+F CL IGRDL+RLLQ++ +P F +WK
Sbjct: 217 IVDH---HGTAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWK 273
Query: 237 DLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAW 296
D++ NP +P F+ I QL RTS ++ R+TP+MET+L F+ + V+ G QKRYQ W
Sbjct: 274 DIIHNPQAL-SPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDW 332
Query: 297 FAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNA 356
F +++L P+ ++L D+IR+IC HPSNE++ SDI+PRWA+IGWLL +C N +NA
Sbjct: 333 FQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTACTSNVAASNA 392
Query: 357 KLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDV 416
KLALFYDWLFF D+IMNIEPA+L+M S+ + +T TLLDF+ ++ N+ +
Sbjct: 393 KLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGH 452
Query: 417 IARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRK 456
+ +GV S+ +V K V+ L L L L+ LR+
Sbjct: 453 VRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLRE 492
>sp|Q68E01|INT3_HUMAN Integrator complex subunit 3 OS=Homo sapiens GN=INTS3 PE=1 SV=1
Length = 1043
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/401 (39%), Positives = 256/401 (63%), Gaps = 6/401 (1%)
Query: 57 VLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVS 116
+L EP A+ + L + DG + ++ + +++ E Y+KL D+ + QL+W+ +E++
Sbjct: 97 ILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSG 156
Query: 117 AVGFDGLLVSLLRQIVGG-DFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLR 175
+G DG+ ++ ++QI GG D + N+WL ++ + + + +L+ ++++ A+YT+LR
Sbjct: 157 VLGADGVCMTFMKQIAGGGDVTAKNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLR 215
Query: 176 LLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIW 235
L+ DH ++L L+ E+DFC+ +LRE+F CL IGRDL+RLLQ++ +P F +W
Sbjct: 216 LIVDH---HGTAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLW 272
Query: 236 KDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQA 295
KD++ NP +P F+ I QL RTS ++ R+TP+MET+L F+ + V+ G QKRYQ
Sbjct: 273 KDIIHNPQAL-SPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQD 331
Query: 296 WFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETN 355
WF +++L P+ ++L D+IR+IC HPSNE++ SDI+PRWA+IGWLL +C N +N
Sbjct: 332 WFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASN 391
Query: 356 AKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKD 415
AKLALFYDWLFF D+IMNIEPA+L+M S+ + +T TLLDF+ ++ N+ +
Sbjct: 392 AKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEG 451
Query: 416 VIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRK 456
+ +GV S+ +V K V+ L L L L+ LR+
Sbjct: 452 HVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLRE 492
>sp|Q1LXC9|INT3_DANRE Integrator complex subunit 3 OS=Danio rerio GN=ints3 PE=2 SV=1
Length = 1017
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/438 (38%), Positives = 268/438 (61%), Gaps = 13/438 (2%)
Query: 19 LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDG 78
LS R+A DAL A PQ++ ++ + +L EP A+ + L + DG
Sbjct: 44 LSEREANDALT-------AHVCKGPQQHEEVCLGLFTLLLTEPPQAQRCYRDLTLVNRDG 96
Query: 79 YALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSD 138
+ + + +++ E ++KL D + QL+W+ +E++ +G DG+L++L++QI GGD S
Sbjct: 97 MNVVLMKINQILMEKFLKLQDVCRTQLVWLVRELVKSGVIGADGVLMTLMKQIAGGDISS 156
Query: 139 GNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEID 198
NLWL ++ + + + + +L+ LV S LYT+LRL+ DH + L L+ E+D
Sbjct: 157 KNLWLAENVLDILVDQREWVLKSGMLVAMS-LYTYLRLIVDH----GTTSLLPLRQREVD 211
Query: 199 FCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYH 258
FC+ +LRE+F C IGRDL+RLLQ++ +P +W+DL+ +P +P F+ I QL
Sbjct: 212 FCIGLLRERFMECFIIGRDLVRLLQNVARIPEMELVWRDLLHSPQTL-SPQFTGILQLLT 270
Query: 259 LRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFI 318
RTS ++ R+TP+MET+L F+ + V+ G QKRYQ WF +++L E ++L D+IR+I
Sbjct: 271 SRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTAESQSLRCDLIRYI 330
Query: 319 CCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIE 378
C HPSNE++ SDI+PRWA+IGWLL +C N +NAKLALFYDWLFF+ D+IMNIE
Sbjct: 331 CGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFNPEKDSIMNIE 390
Query: 379 PAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLD 438
PA+L+M S+ + +T TLLDF+ ++ ++ + + +GV ++ ++ K V+ L
Sbjct: 391 PAILVMHHSMKPHPAITATLLDFMCRIIPHFFPPLEGQVRQGVFNSLNFIMEKRVLAHLA 450
Query: 439 VLVSCKTLSPYLKERLRK 456
L L L+ LR+
Sbjct: 451 PLFDNPKLDRELRSMLRE 468
>sp|B4JPR2|INT3_DROGR Integrator complex subunit 3 homolog OS=Drosophila grimshawi
GN=IntS3 PE=3 SV=1
Length = 1083
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 160/414 (38%), Positives = 247/414 (59%), Gaps = 10/414 (2%)
Query: 44 QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
+++ +++ LY +L +P A + + + DG + V+ L +V E Y KL ++ +
Sbjct: 67 KQHEEISIGFLYIILTDPAMAPKTYRDITLVSRDGMNVIVANLTLLVAEKYAKLTETARR 126
Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
QLIWV +E + + + ++ + LRQ GGD S NL+L L+ +F+ ++ LE P
Sbjct: 127 QLIWVLREFVKHQVLSVENVIWNCLRQAGGGDVSHKNLYLVESLLDIFI-EYRAWLETNP 185
Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
++ S++Y+F+RL+ DH N L L+ E+ F + ++R++F + +GRD +RLLQ
Sbjct: 186 FLVQSSVYSFVRLIEDHA----NPALISLRQKEVKFTISLIRDRFHDIIPLGRDFVRLLQ 241
Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
++ +P F +W+D++ NP P F+ I L +RTS R+ R+ PEME +L FL +
Sbjct: 242 NVARIPEFELLWRDILYNPKSLH-PTFNGIWHLLQIRTSRRFLQCRLLPEMERKLHFLAS 300
Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
VK G+QKRYQ WF K+ PE +L D+IRFI HP+N+++ SDIIPRWA+IGWL
Sbjct: 301 SVKFGNQKRYQDWFQDKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 360
Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
+ SC NAKL+LFYDWLFFD + DNIMNIEP +L+M SI + ++ TLLDFL
Sbjct: 361 ISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 420
Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
+ N+ V +D I GV ++ ++ K V+ +L L SP L LR +
Sbjct: 421 RITKNFYVKNEDRIRLGVYNSLKLILDKQVIPNLHPLFE----SPKLDRELRNL 470
>sp|B4KJ11|INT3_DROMO Integrator complex subunit 3 homolog OS=Drosophila mojavensis
GN=IntS3 PE=3 SV=1
Length = 1079
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/414 (38%), Positives = 247/414 (59%), Gaps = 10/414 (2%)
Query: 44 QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
+++ +++ LY +L +P A + + + DG + V+ L +V E Y KL ++ +
Sbjct: 62 KQHEEISIGFLYIILTDPAMAPKTYRDITLVSRDGMNVIVANLTLLVAEKYTKLTETARR 121
Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
QLIWV +E + + + ++ + LRQ GGD S NL+L L+ +F+ ++ LE P
Sbjct: 122 QLIWVLREFVKHQVLSVENVIWNCLRQAGGGDVSHKNLFLVESLLDIFI-EYRAWLETNP 180
Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
++ S++Y+F+RL+ DH N L L+ E+ F + ++R++F + +GRD +RLLQ
Sbjct: 181 FLVQSSVYSFVRLIEDHA----NPALISLRQKEVKFTISLIRDRFHDIIPLGRDFVRLLQ 236
Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
++ +P F +W+D++ NP P F+ I L +RTS R+ R+ PEME +L FL +
Sbjct: 237 NVARIPEFEQLWRDILYNPKSLH-PTFNGIWHLLQIRTSRRFLQCRLLPEMERKLHFLAS 295
Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
VK G+QKRYQ WF K+ PE +L D+IRFI HP+N+++ SDIIPRWA+IGWL
Sbjct: 296 SVKFGNQKRYQDWFQDKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 355
Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
+ SC NAKL+LFYDWLFFD + DNIMNIEP +L+M SI + ++ TLLDFL
Sbjct: 356 ISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 415
Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
+ N+ + +D I GV ++ ++ K V+ +L L SP L LR +
Sbjct: 416 RITKNFYIKNEDKIRLGVYNSLKLILDKQVIPNLHPLFE----SPKLDRELRNL 465
>sp|B4LQY8|INT3_DROVI Integrator complex subunit 3 homolog OS=Drosophila virilis GN=IntS3
PE=3 SV=1
Length = 1079
Score = 305 bits (782), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 168/450 (37%), Positives = 261/450 (58%), Gaps = 14/450 (3%)
Query: 12 EAENPYE---LSIRQAFDALESK-LRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVH 67
E E +E +S++Q L K + V +++ +++ LY +L +P A
Sbjct: 26 EIEEKFERSYVSLQQQIAGLSDKEMHDMLTQIVCKEKQHEEISIGFLYIILTDPAMAPKT 85
Query: 68 IKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSL 127
+ + + DG + V+ L +V E Y KL ++ + QLIWV +E + + + ++ +
Sbjct: 86 YRDITLVSRDGMNVIVANLTLLVAEKYAKLTETARRQLIWVLREFVKHQVLSVENVIWNC 145
Query: 128 LRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNS 187
LRQ GGD S NL+L L+ +F+ ++ LE P ++ S++Y+F+RL+ DH N
Sbjct: 146 LRQAGGGDVSHKNLFLVESLLDIFI-EYRAWLEAIPFLVQSSVYSFVRLIEDHA----NP 200
Query: 188 KLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKT 247
L L+ E+ F + ++R++FQ + +GRD +RLLQ++ +P F +W+D++ NP
Sbjct: 201 ALMPLRQKEVKFTISLIRDRFQDIIPLGRDFVRLLQNVARIPEFELLWRDILCNPKSLH- 259
Query: 248 PGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPER 307
P F+ I L +RTS R+ R+ PEME +L FL + VK G+QKRYQ WF K+ PE
Sbjct: 260 PTFNGIWHLLQIRTSRRFLQCRLLPEMERKLHFLASSVKFGNQKRYQDWFQDKYFATPES 319
Query: 308 ETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFF 367
+L D+IRFI HP+N+++ SDIIPRWA+IGWL+ SC NAKL+LFYDWLFF
Sbjct: 320 HSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWLISSCTNPIASANAKLSLFYDWLFF 379
Query: 368 DESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFAT 427
D + DNIMNIEP +L+M SI + ++ TLLDFL + N+ + +D I GV ++
Sbjct: 380 DPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLCRITKNFYIKNEDKIRLGVYNSLKL 439
Query: 428 LVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
++ K V+ +L L SP L LR +
Sbjct: 440 ILDKQVIPNLHPLFE----SPKLDRELRNL 465
>sp|B4NP05|INT3_DROWI Integrator complex subunit 3 homolog OS=Drosophila willistoni
GN=IntS3 PE=3 SV=1
Length = 1086
Score = 305 bits (782), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 160/414 (38%), Positives = 250/414 (60%), Gaps = 10/414 (2%)
Query: 44 QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
+++ +++ +LY +L +P A + + + DG ++ V+ L +V E Y KL +
Sbjct: 64 KQHDEMSIGLLYIMLTDPIMAPKTYRDITLVSRDGMSVIVANLTLLVAEKYSKLTEGACR 123
Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
Q+IWV +E + + + ++ + LRQ GGD S NL+L L+ +F+ ++ LE P
Sbjct: 124 QIIWVLREFVKHQVLSVENVIWNCLRQAGGGDVSHKNLYLVENLLDIFI-EYRNWLETNP 182
Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
++ S +Y+++RL+ DH +N L L+ E++F + ++R++FQ + +GRD +RLLQ
Sbjct: 183 FLVQSIVYSYVRLIEDH----SNPALASLRQKEVNFTISLIRDRFQDVIPLGRDFVRLLQ 238
Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
++ +P F +W+D++ NP P F+ I QL +RTS R+ R+ PEME +L FL +
Sbjct: 239 NVARIPEFEQLWRDVLYNPKSLH-PTFNGIWQLLQIRTSRRFLQCRLLPEMERKLHFLAS 297
Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
VK G+QKRYQ WF K+ PE +L D+IRFI HP+N+++ SDIIPRWA+IGWL
Sbjct: 298 SVKFGNQKRYQDWFQDKYFSTPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 357
Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
+ SC NAKL+LFYDWLFFD + DNIMNIEP +L+M SI + ++ TLLDFL
Sbjct: 358 ISSCTNPIASANAKLSLFYDWLFFDPTKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 417
Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
+ N+ V +D I GV ++ ++ K V+ +L L SP L LR +
Sbjct: 418 RITKNFYVKYEDKIRMGVYNSLKLILDKQVIPNLQPLFE----SPKLDRELRNL 467
>sp|B4ISV0|INT3_DROYA Integrator complex subunit 3 homolog OS=Drosophila yakuba GN=IntS3
PE=3 SV=1
Length = 1072
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 161/414 (38%), Positives = 246/414 (59%), Gaps = 10/414 (2%)
Query: 44 QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
+++ +++ LY +L +P A + + + DG V+ L +V E Y KL + +
Sbjct: 62 KQHEEISIGFLYIMLTDPSMAPKTYRDVTLVSRDGMNGIVTNLTFLVAEKYTKLTEVARR 121
Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
QLIW+ +E + + + ++ + LRQ GGD S NL+L L+ +F+ ++ LE P
Sbjct: 122 QLIWLLREFVKHQVLSVENVIWNCLRQAGGGDVSSRNLFLIESLLDIFI-EFRTWLEGNP 180
Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
++ S +Y+F+RL+ DH N L L+ E+ F + ++RE+F + +GRD +RLLQ
Sbjct: 181 FLVQSTVYSFVRLIEDHA----NPALMSLRQKEVKFTISLIRERFHDIIPLGRDFVRLLQ 236
Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
++ +P F +W+DL+ NP F+ I QL H+RTS R+ R+ PEME ++ FL +
Sbjct: 237 NVARIPEFEQLWRDLIFNPKILHQ-TFNGIWQLLHIRTSRRFLQCRLLPEMERKISFLAS 295
Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
VK G+QKRYQ WF +K+ PE +L D+IRFI HP+N+++ SDIIPRWA+IGWL
Sbjct: 296 SVKFGNQKRYQDWFQEKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 355
Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
+ SC NAKL+LFYDWLFFD + DNIMNIEP +L+M SI + ++ TLLDFL
Sbjct: 356 ISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 415
Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
+ N+ V +D I GV ++ ++ K V+ +L L SP L LR +
Sbjct: 416 RITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFE----SPKLDRELRNL 465
>sp|B3N449|INT3_DROER Integrator complex subunit 3 homolog OS=Drosophila erecta GN=IntS3
PE=3 SV=1
Length = 1072
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 160/414 (38%), Positives = 247/414 (59%), Gaps = 10/414 (2%)
Query: 44 QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
+++ +++ LY +L +P A + + + DG V+ L +V E Y KL + +
Sbjct: 62 KQHEEISIGFLYIMLTDPSMAPKTYRDVTLVSRDGMNGIVTNLTFLVAEKYTKLTEVARR 121
Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
QLIW+ +E + + + ++ + LRQ GGD S NL+L L+ +F+ ++ LE P
Sbjct: 122 QLIWLLREFVKHQVLSVENVIWNCLRQAGGGDVSSRNLFLIESLLDIFI-EFRTWLEGNP 180
Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
++ S +Y+F+RL+ DH N L L+ E+ F + ++RE+F + +GRD +RLLQ
Sbjct: 181 FLVQSTVYSFVRLIEDHA----NPALMSLRQKEVKFTISLIRERFHDIIPLGRDFVRLLQ 236
Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
++ +P F +W+D++ NP + F+ I QL H+RTS R+ R+ PEME ++ FL +
Sbjct: 237 NVARIPEFEQLWRDILFNP-KILNQTFNGIWQLLHIRTSRRFLQCRLLPEMERKISFLAS 295
Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
VK G+QKRYQ WF +K+ PE +L D+IRFI HP+N+++ SDIIPRWA+IGWL
Sbjct: 296 SVKFGNQKRYQDWFQEKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 355
Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
+ SC NAKL+LFYDWLFFD + DNIMNIEP +L+M SI + ++ TLLDFL
Sbjct: 356 ISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 415
Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
+ N+ V +D I GV ++ ++ K V+ +L L SP L LR +
Sbjct: 416 RITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFE----SPKLDRELRNL 465
>sp|Q7PLS8|INT3_DROME Integrator complex subunit 3 homolog OS=Drosophila melanogaster
GN=IntS3 PE=1 SV=1
Length = 1068
Score = 301 bits (770), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 160/414 (38%), Positives = 245/414 (59%), Gaps = 10/414 (2%)
Query: 44 QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
+++ +++ LY +L +P A + + + DG V+ L +V E Y KL + +
Sbjct: 62 KQHEEISIGFLYIMLTDPSMASKTYRDVTLVSRDGMNGIVTNLTFLVAEKYTKLTEVARR 121
Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
QLIW+ +E + + + ++ + LRQ GGD S NL+L L+ +F+ ++ LE P
Sbjct: 122 QLIWLLREFVKHQVLSVENVIWNCLRQAGGGDVSSRNLFLIESLLDIFI-EFRTWLETNP 180
Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
++ S +Y+F+RL+ DH N L L+ E+ F + ++RE+F + +GRD +RLLQ
Sbjct: 181 FLVQSTVYSFVRLIEDHA----NPALLSLRQKEVKFTISLIRERFHDIIPLGRDFVRLLQ 236
Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
++ +P F +W+D++ NP F+ I QL H+RTS R+ R+ PEME ++ FL +
Sbjct: 237 NVARIPEFEQLWRDILFNPKMLHQ-TFNGIWQLLHIRTSRRFLQCRLLPEMERKISFLAS 295
Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
VK G+QKRYQ WF K+ PE +L D+IRFI HP+N+++ SDIIPRWA+IGWL
Sbjct: 296 SVKFGNQKRYQDWFQDKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 355
Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
+ SC NAKL+LFYDWLFFD + DNIMNIEP +L+M SI + ++ TLLDFL
Sbjct: 356 ISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 415
Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
+ N+ V +D I GV ++ ++ K V+ +L L SP L LR +
Sbjct: 416 RITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFE----SPKLDRELRNL 465
>sp|B4IMI7|INT3_DROSE Integrator complex subunit 3 homolog OS=Drosophila sechellia
GN=IntS3 PE=3 SV=1
Length = 1068
Score = 300 bits (769), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/414 (38%), Positives = 244/414 (58%), Gaps = 10/414 (2%)
Query: 44 QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
+++ ++ LY +L +P A + + + DG V+ L +V E Y KL + +
Sbjct: 62 KQHEDISIGFLYIMLTDPSMASKTYRDVTLVSRDGMNGIVTNLTFLVAEKYTKLTEVARR 121
Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
QLIW+ +E + + + ++ + LRQ GGD S NL+L L+ +F+ ++ LE P
Sbjct: 122 QLIWLLREFVKHQVLSVENVIWNCLRQAGGGDVSSRNLFLIESLLDIFI-EFRTWLESNP 180
Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
++ S +Y+F+RL+ DH N L L+ E+ F + ++RE+F + +GRD +RLLQ
Sbjct: 181 FLVQSTVYSFVRLIEDHA----NPALLSLRQKEVKFTISLIRERFHDIIPLGRDFVRLLQ 236
Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
++ +P F +W+D++ NP F+ I QL H+RTS R+ R+ PEME ++ FL +
Sbjct: 237 NVARIPEFEQLWRDILFNPKMLHQ-TFNGIWQLLHIRTSRRFLQCRLLPEMERKISFLAS 295
Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
VK G+QKRYQ WF K+ PE +L D+IRFI HP+N+++ SDIIPRWA+IGWL
Sbjct: 296 SVKFGNQKRYQDWFQDKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 355
Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
+ SC NAKL+LFYDWLFFD + DNIMNIEP +L+M SI + ++ TLLDFL
Sbjct: 356 ISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 415
Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
+ N+ V +D I GV ++ ++ K V+ +L L SP L LR +
Sbjct: 416 RITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFE----SPKLDRELRNL 465
>sp|Q7PRB8|INT3_ANOGA Integrator complex subunit 3 homolog OS=Anopheles gambiae
GN=AGAP002539 PE=3 SV=5
Length = 1082
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 262/462 (56%), Gaps = 12/462 (2%)
Query: 40 VPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFD 99
V +++ +++ A++Y +L +P A + L + DG + L +V E Y KL D
Sbjct: 57 VSKEKQHEEISLALVYIILTDPSSAPKTYRDLTLLTRDGLGFVTANLAMLVAEKYHKLTD 116
Query: 100 SVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLL 159
+ QL+W+ +E+I + D L ++LRQ GGD S N+ L L+ +F + L
Sbjct: 117 VGRKQLLWLLRELIKNQVLNVDNLAWNILRQASGGDISPKNVALIEGLLDIFT-EHRAWL 175
Query: 160 EEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLI 219
E++ ++ + YTF+RL+ DH + L+ E+ F + ++R++F + +GR+ +
Sbjct: 176 EKDQFLVGTVAYTFVRLIEDHF----GPQFVHLRNREVKFVISLIRDRFMDIIPLGREFV 231
Query: 220 RLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLR 279
RLLQ++ +P F +WKD++ NP P F+ + QL RTS R+ R+TP++E ++
Sbjct: 232 RLLQNVGRIPEFDQLWKDMLYNPKSL-CPTFNGVWQLLQTRTSRRFLRGRLTPDIERKIH 290
Query: 280 FLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAV 339
FL ++VK G+QKRYQ WF +++ PE ++L D+IRFI HP+N+++ SDIIPRWA+
Sbjct: 291 FLTSNVKFGNQKRYQDWFQERYFNTPESQSLRCDLIRFIISAIHPTNDMLCSDIIPRWAI 350
Query: 340 IGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLL 399
IGWLL SC NAKLALFYDWLFFD + DNIMN+EP +L+M SI + ++ TLL
Sbjct: 351 IGWLLTSCTNAVTLANAKLALFYDWLFFDPAKDNIMNVEPGILVMYHSIKNHPLVSCTLL 410
Query: 400 DFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQV 459
DFL ++ N+ +D I G+ ++ ++ V+ +L L L LK LR+
Sbjct: 411 DFLCRIMKNFYPKWEDRIRTGIYNSLRKILEMKVIPNLVPLFESPKLDRELKGMLRET-F 469
Query: 460 LEVRVPNELHLLHIS--QHSMET---FNLPSPTPCSETERQP 496
E VP +H Q MET + P P + E+ P
Sbjct: 470 REFCVPPNSMYMHPGPPQPGMETPMMMHYPGPGGGEQVEQHP 511
>sp|Q87B85|TTCA_XYLFT tRNA 2-thiocytidine biosynthesis protein TtcA OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ttcA PE=3 SV=2
Length = 299
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 15/160 (9%)
Query: 175 RLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAI 234
R+ + C+L + V + + DF + ++ +CL G+D LL L+ + +
Sbjct: 19 RIRREQCKLAKRLRRQVGQAIA-DFGMIEANDKIMVCLSGGKDSYTLLDMLLQLRAKAPV 77
Query: 235 WKDLVLNPSEFKTPGF---------SDISQLYHLRTSSRY-FLTRITPEMETQLRFLLTH 284
+L + K PGF S I YH+ Y +TR+ PE +T L L +
Sbjct: 78 PFELTAVNLDQKQPGFPKHVLPEYLSSIGVPYHIIEQDTYSVVTRVVPEGKT-LCALCSR 136
Query: 285 VKLGSQKRY-QAWFAKKFLFGPERETLIVDIIRFICCGHH 323
++ G+ Y + K G R+ ++ F+ HH
Sbjct: 137 MRRGALYAYAETQGFTKIALGHHRDDMVATF--FMNLFHH 174
>sp|B2I7H1|TTCA_XYLF2 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Xylella fastidiosa
(strain M23) GN=ttcA PE=3 SV=1
Length = 299
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 15/160 (9%)
Query: 175 RLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAI 234
R+ + C+L + V + + DF + ++ +CL G+D LL L+ + +
Sbjct: 19 RIRREQCKLAKRLRRQVGQAIA-DFGMIEANDKIMVCLSGGKDSYTLLDMLLQLRAKAPV 77
Query: 235 WKDLVLNPSEFKTPGF---------SDISQLYHLRTSSRY-FLTRITPEMETQLRFLLTH 284
+L + K PGF S I YH+ Y +TR+ PE +T L L +
Sbjct: 78 PFELTAVNLDQKQPGFPKHVLPEYLSSIGVPYHIIEQDTYSVVTRVVPEGKT-LCALCSR 136
Query: 285 VKLGSQKRY-QAWFAKKFLFGPERETLIVDIIRFICCGHH 323
++ G+ Y + K G R+ ++ F+ HH
Sbjct: 137 MRRGALYAYAETQGFTKIALGHHRDDMVATF--FMNLFHH 174
>sp|B0U453|TTCA_XYLFM tRNA 2-thiocytidine biosynthesis protein TtcA OS=Xylella fastidiosa
(strain M12) GN=ttcA PE=3 SV=1
Length = 299
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 15/160 (9%)
Query: 175 RLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAI 234
R+ + C+L + V + + DF + ++ +CL G+D LL L+ + +
Sbjct: 19 RIRREKCKLAKRLRRQVGQAIA-DFGMIEANDKIMVCLSGGKDSYTLLDMLLQLRAKAPV 77
Query: 235 WKDLVLNPSEFKTPGF---------SDISQLYHLRTSSRY-FLTRITPEMETQLRFLLTH 284
+L + K PGF S I YH+ Y +TR+ PE +T L L +
Sbjct: 78 PFELTAVNLDQKQPGFPKHVLPEYLSSIGVPYHIIEQDTYSVVTRVVPEGKT-LCALCSR 136
Query: 285 VKLGSQKRY-QAWFAKKFLFGPERETLIVDIIRFICCGHH 323
++ G+ Y + K G R+ ++ F+ HH
Sbjct: 137 MRRGALYAYAETQGFTKIALGHHRDDMVATF--FMNLFHH 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,129,596
Number of Sequences: 539616
Number of extensions: 8057257
Number of successful extensions: 21939
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 21876
Number of HSP's gapped (non-prelim): 28
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)