BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009342
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/521 (47%), Positives = 343/521 (65%), Gaps = 27/521 (5%)
Query: 29 AENHEKFLKCLSLQ-SDTIS--EVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITP 85
A E FLKC S + ++ +++YTQ++ Y S+L ++IQNL F + PKPL I+TP
Sbjct: 1 ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60
Query: 86 FHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTA 145
+ S IQA + CSKK GLQIR RSGGHD EG+S IS VPF+++DL N I +DV +TA
Sbjct: 61 SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTA 120
Query: 146 WVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVD 205
WVE+GAT+G++ Y I EK++N L+FP G CP+V AL+R YG AAD+I+D
Sbjct: 121 WVEAGATLGEVYYWINEKNEN-LSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179
Query: 206 AHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE- 264
AH+++V G+ L+R+SMGEDLFWAIRGGGG +FGII +WKI LVAVPS T+F+V + +E
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239
Query: 265 QNATKLLNKWQYIADRVHEDLFISPFLFREN---------STMVSLFTSLFLGGVDRLLR 315
KL NKWQ IA + +DL + +N +T+ F+S+F GGVD L+
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299
Query: 316 LMQDSFPELGLTKEDCKEMTFVESIVYLDGF------EIRESIDMDVLRGRNFPKRPFIG 369
LM SFPELG+ K DCKE +++++ ++ G ++ I +D G+ K F
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGK---KTAFSI 356
Query: 370 KADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYT 429
K DY+ +PIPE A I + +E+D G+ V +PYGG + EISES IP+PHRAG +Y
Sbjct: 357 KLDYVKKPIPETAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRAGIMYE 415
Query: 430 LLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTS 489
L Y A W ++ + ++H+N +R+++N+ TPYV++NPR AY+NYRDLD+G N +
Sbjct: 416 LWYTASWEKQEDN---EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNN 472
Query: 490 VQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 530
+A +WG+KYF NF RLV VKT VDP NFFRNEQSIPP
Sbjct: 473 YTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/506 (41%), Positives = 308/506 (60%), Gaps = 18/506 (3%)
Query: 28 AAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFH 87
A + FL CL+ D LY +++ +Y+SV ++++N+ F + KPL+IITP +
Sbjct: 6 AKQVERDFLTCLT--KDIPPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTN 63
Query: 88 VSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVP--FIIIDLINFSEISVDVEDKTA 145
S IQAAV C +++G++IRVRSGGHD+EGLS S+ P F ++D+ +S+D + TA
Sbjct: 64 ASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATA 123
Query: 146 WVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVD 205
WV+SGA +G L Y IA+ S L FP G C ++ LLRKYG AAD+++D
Sbjct: 124 WVDSGAQLGDLYYGIAKASPKL-GFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVID 182
Query: 206 AHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQ 265
A ++D +GR L+R++MGED FWAIRGGGG SFGI+ SW++ L+ VP VTVF V + +++
Sbjct: 183 AKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKE 242
Query: 266 NATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELG 325
A L+ KWQ +A + +DL I + ++F +L+LG L+ LM FPELG
Sbjct: 243 GAIDLVTKWQTVAPALPDDLMIRIMAMGQG----AMFEALYLGTCKDLVLLMTARFPELG 298
Query: 326 LTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQG 385
+ CKEMT++ES+ Y+ + D+L + K K+DY+ EPIP+ ++
Sbjct: 299 MNATHCKEMTWIESVPYIPMGP--KGTVRDLLNRTSNIKAFGKYKSDYVLEPIPKSDWEK 356
Query: 386 IYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAY 445
I+ + G+++ PYGG I+ + ES P+P R+G ++ + Y W E A
Sbjct: 357 IFTWLVKPGA---GVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEG---AA 410
Query: 446 QRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSV-QEASVWGKKYFKNN 504
R ++++MTPYV+KNPR AY+NYRDLD+G N +G+ S VWG+KYFK N
Sbjct: 411 ALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGN 470
Query: 505 FYRLVHVKTMVDPENFFRNEQSIPPF 530
F RL K +DPE++FRNEQSIPP
Sbjct: 471 FERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/502 (41%), Positives = 307/502 (61%), Gaps = 18/502 (3%)
Query: 33 EKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQ 92
E FL CL + +LY +++ +Y SVL +I+N +S+P N KPL+IITP VS IQ
Sbjct: 9 EDFLGCLV--KEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQ 66
Query: 93 AAVKCSKKNGLQIRVRSGGHDHEGLSSISDVP--FIIIDLINFSEISVDVEDKTAWVESG 150
+AV C +++ ++IRVRSGGHD+EGLS S P F ++DL + VD + +TAWV+SG
Sbjct: 67 SAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSG 126
Query: 151 ATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVDAHMID 210
A +G+L Y I + S L AFP G CP++ LLRKYG AA++++D ++D
Sbjct: 127 AQLGELYYAIYKASPTL-AFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVD 185
Query: 211 VKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKL 270
G+ +++SMG+D FWA+RGGGG SFGI+V+W++ L+ VP TVT+F + +T+ + A +
Sbjct: 186 ANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDI 245
Query: 271 LNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKED 330
+NKWQ +A ++ DL I +T F +++LG L LM FPELG+
Sbjct: 246 INKWQVVAPQLPADLMIRIIAQGPKAT----FEAMYLGTCKTLTPLMSSKFPELGMNPSH 301
Query: 331 CKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIG-KADYLTEPIPEEAFQGIYDI 389
C EM++++SI ++ R++++ D+L +N K PF K+DY+ +P P+ ++ I +
Sbjct: 302 CNEMSWIQSIPFVH-LGHRDALEDDLLNRQNSFK-PFAEYKSDYVYQPFPKTVWEQILNT 359
Query: 390 FFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHV 449
+ + G+++F PYG IS ES P+PHR G ++ + Y W A +
Sbjct: 360 WLVKPGA--GIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPG---AAAAPL 414
Query: 450 NMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSV-QEASVWGKKYFKNNFYRL 508
+ + ++NYM PYV+KNPR AY NYRD+D+G N + S VWG+KYFK NF RL
Sbjct: 415 SWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERL 474
Query: 509 VHVKTMVDPENFFRNEQSIPPF 530
K VDP ++FRNEQSIPP
Sbjct: 475 AITKGKVDPTDYFRNEQSIPPL 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 352 bits (903), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 197/508 (38%), Positives = 288/508 (56%), Gaps = 15/508 (2%)
Query: 28 AAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFH 87
AE L CL+ V +++ ++ L SIQN +F KP II P
Sbjct: 20 CAEAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGS 79
Query: 88 VSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWV 147
E+ ++C +K IR+RSGGH +EGLS SD PFI+IDL+N + +S+D+E +TAWV
Sbjct: 80 KEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWV 139
Query: 148 ESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVDAH 207
ESG+T+G+L Y I E S L F G CP+V + RKYG AAD++VDA
Sbjct: 140 ESGSTLGELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAI 198
Query: 208 MIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE-QN 266
+ID G L+R++MGED+FWAIRGGGG +G I +WKI L+ VP VTVF V + +
Sbjct: 199 LIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE 258
Query: 267 ATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQD-SFPELG 325
AT LL+KWQ++A+ + ED +S L + V L F G+ + + D FPELG
Sbjct: 259 ATSLLHKWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELG 317
Query: 326 LTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQG 385
L +ED EM++ ES YL G E ++ L+ F +R F K D EP+P +AF G
Sbjct: 318 LVEEDYLEMSWGESFAYLAGLETVSQLNNRFLK---FDERAFKTKVDLTKEPLPSKAFYG 374
Query: 386 IYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAY 445
+ + ++ NG + +GG++S+IS P+PHR+G + Y W Q
Sbjct: 375 LLE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE-QKKK 430
Query: 446 QRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGHTSVQEASVWGKKYF 501
++ L ++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF
Sbjct: 431 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 490
Query: 502 KNNFYRLVHVKTMVDPENFFRNEQSIPP 529
+N+ RL+ KT++DP N F + QSIPP
Sbjct: 491 LSNYERLIRAKTLIDPNNVFNHPQSIPP 518
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 351 bits (901), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 197/507 (38%), Positives = 288/507 (56%), Gaps = 15/507 (2%)
Query: 29 AENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHV 88
AE L CL+ V +++ ++ L SIQN +F KP II P
Sbjct: 2 AEAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSK 61
Query: 89 SEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVE 148
E+ ++C +K IR+RSGGH +EGLS SD PFI+IDL+N + +S+D+E +TAWVE
Sbjct: 62 EELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVE 121
Query: 149 SGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVDAHM 208
SG+T+G+L Y I E S L F G CP+V + RKYG AAD++VDA +
Sbjct: 122 SGSTLGELYYAITESSSK-LGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAIL 180
Query: 209 IDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE-QNA 267
ID G L+R++MGED+FWAIRGGGG +G I +WKI L+ VP VTVF V + + A
Sbjct: 181 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 240
Query: 268 TKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQD-SFPELGL 326
T LL+KWQ++A+ + ED +S L + V L F G+ + + D FPELGL
Sbjct: 241 TSLLHKWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 299
Query: 327 TKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGI 386
+ED EM++ ES YL G E ++ L+ F +R F K D EP+P +AF G+
Sbjct: 300 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLK---FDERAFKTKVDLTKEPLPSKAFYGL 356
Query: 387 YDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQ 446
+ ++ NG + +GG++S+IS P+PHR+G + Y W Q
Sbjct: 357 LE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE-QKKKT 412
Query: 447 RHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGHTSVQEASVWGKKYFK 502
++ L ++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF
Sbjct: 413 EFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFL 472
Query: 503 NNFYRLVHVKTMVDPENFFRNEQSIPP 529
+N+ RL+ KT++DP N F + QSIPP
Sbjct: 473 SNYERLIRAKTLIDPNNVFNHPQSIPP 499
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 351 bits (901), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 197/507 (38%), Positives = 288/507 (56%), Gaps = 15/507 (2%)
Query: 29 AENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHV 88
AE L CL+ V +++ ++ L SIQN +F KP II P
Sbjct: 2 AEAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSK 61
Query: 89 SEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVE 148
E+ ++C +K IR+RSGGH +EGLS SD PFI+IDL+N + +S+D+E +TAWVE
Sbjct: 62 EELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVE 121
Query: 149 SGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVDAHM 208
SG+T+G+L Y I E S L F G CP+V + RKYG AAD++VDA +
Sbjct: 122 SGSTLGELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAIL 180
Query: 209 IDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE-QNA 267
ID G L+R++MGED+FWAIRGGGG +G I +WKI L+ VP VTVF V + + A
Sbjct: 181 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 240
Query: 268 TKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQD-SFPELGL 326
T LL+KWQ++A+ + ED +S L + V L F G+ + + D FPELGL
Sbjct: 241 TSLLHKWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 299
Query: 327 TKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGI 386
+ED EM++ ES YL G E ++ L+ F +R F K D EP+P +AF G+
Sbjct: 300 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLK---FDERAFKTKVDLTKEPLPSKAFYGL 356
Query: 387 YDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQ 446
+ ++ NG + +GG++S+IS P+PHR+G + Y W Q
Sbjct: 357 LE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE-QKKKT 412
Query: 447 RHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGHTSVQEASVWGKKYFK 502
++ L ++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF
Sbjct: 413 EFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFL 472
Query: 503 NNFYRLVHVKTMVDPENFFRNEQSIPP 529
+N+ RL+ KT++DP N F + QSIPP
Sbjct: 473 SNYERLIRAKTLIDPNNVFNHPQSIPP 499
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 350 bits (897), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 195/501 (38%), Positives = 286/501 (57%), Gaps = 15/501 (2%)
Query: 35 FLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAA 94
L CL+ V +++ ++ L SIQN +F KP II P E+
Sbjct: 2 LLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 61
Query: 95 VKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVG 154
++C +K IR+RSGGH +EGLS SD PFI+IDL+N + +S+D+E +TAWVESG+T+G
Sbjct: 62 IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 121
Query: 155 QLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVDAHMIDVKGR 214
+L Y I E S L F G CP+V + RKYG AAD++VDA +ID G
Sbjct: 122 ELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGA 180
Query: 215 FLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE-QNATKLLNK 273
L+R++MGED+FWAIRGGGG +G I +WKI L+ VP VTVF V + + AT LL+K
Sbjct: 181 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 240
Query: 274 WQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQD-SFPELGLTKEDCK 332
WQ++A+ + ED +S L + V L F G+ + + D FPELGL +ED
Sbjct: 241 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 299
Query: 333 EMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFE 392
EM++ ES YL G E ++ L+ F +R F K D EP+P +AF G+ +
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLK---FDERAFKTKVDLTKEPLPSKAFYGLLE---R 353
Query: 393 QDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNML 452
++ NG + +GG++S+IS P+PHR+G + Y W Q ++ L
Sbjct: 354 LSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE-QKKKTEFLDWL 412
Query: 453 RTLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRL 508
++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL
Sbjct: 413 EKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERL 472
Query: 509 VHVKTMVDPENFFRNEQSIPP 529
+ KT++DP N F + QSIPP
Sbjct: 473 IRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 346 bits (888), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/501 (38%), Positives = 285/501 (56%), Gaps = 15/501 (2%)
Query: 35 FLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAA 94
L CL+ V +++ ++ L SIQN +F KP II P E+
Sbjct: 5 LLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 64
Query: 95 VKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVG 154
++C +K IR+RSGG +EGLS SD PFI+IDL+N + +S+D+E +TAWVESG+T+G
Sbjct: 65 IRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 124
Query: 155 QLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVDAHMIDVKGR 214
+L Y I E S L F G CP+V + RKYG AAD++VDA +ID G
Sbjct: 125 ELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGA 183
Query: 215 FLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE-QNATKLLNK 273
L+R++MGED+FWAIRGGGG +G I +WKI L+ VP VTVF V + + AT LL+K
Sbjct: 184 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 243
Query: 274 WQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQD-SFPELGLTKEDCK 332
WQ++A+ + ED +S L + V L F G+ + + D FPELGL +ED
Sbjct: 244 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 302
Query: 333 EMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFE 392
EM++ ES YL G E ++ L+ F +R F K D EP+P +AF G+ +
Sbjct: 303 EMSWGESFAYLAGLETVSQLNNRFLK---FDERAFKTKVDLTKEPLPSKAFYGLLE---R 356
Query: 393 QDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNML 452
++ NG + +GG++S+IS P+PHR+G + Y W Q ++ L
Sbjct: 357 LSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE-QKKKTEFLDWL 415
Query: 453 RTLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRL 508
++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL
Sbjct: 416 EKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERL 475
Query: 509 VHVKTMVDPENFFRNEQSIPP 529
+ KT++DP N F + QSIPP
Sbjct: 476 IRAKTLIDPNNVFNHPQSIPP 496
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/501 (38%), Positives = 285/501 (56%), Gaps = 15/501 (2%)
Query: 35 FLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAA 94
L CL+ V +++ ++ L SIQN +F KP II P E+
Sbjct: 2 LLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 61
Query: 95 VKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVG 154
++C +K IR+RSGGH +EGLS SD PFI+IDL+N + +S+D+E +TAWVESG+T+G
Sbjct: 62 IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 121
Query: 155 QLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVDAHMIDVKGR 214
+L Y I E S L F G P+V + RKYG AAD++VDA +ID G
Sbjct: 122 ELYYAITESSSK-LGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGA 180
Query: 215 FLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE-QNATKLLNK 273
L+R++MGED+FWAIRGGGG +G I +WKI L+ VP VTVF V + + AT LL+K
Sbjct: 181 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 240
Query: 274 WQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQD-SFPELGLTKEDCK 332
WQ++A+ + ED +S L + V L F G+ + + D FPELGL +ED
Sbjct: 241 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 299
Query: 333 EMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFE 392
EM++ ES YL G E ++ L+ F +R F K D EP+P +AF G+ +
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLK---FDERAFKTKVDLTKEPLPSKAFYGLLE---R 353
Query: 393 QDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNML 452
++ NG + +GG++S+IS P+PHR+G + Y W Q ++ L
Sbjct: 354 LSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE-QKKKTEFLDWL 412
Query: 453 RTLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRL 508
++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL
Sbjct: 413 EKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERL 472
Query: 509 VHVKTMVDPENFFRNEQSIPP 529
+ KT++DP N F + QSIPP
Sbjct: 473 IRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/501 (38%), Positives = 285/501 (56%), Gaps = 15/501 (2%)
Query: 35 FLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAA 94
L CL+ V +++ ++ L SIQN +F KP II P E+
Sbjct: 2 LLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 61
Query: 95 VKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVG 154
++C +K IR+RSGGH +EGLS SD PFI+IDL+N + +S+D+E +TAWVESG+T+G
Sbjct: 62 IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 121
Query: 155 QLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVDAHMIDVKGR 214
+L Y I E S L F G P+V + RKYG AAD++VDA +ID G
Sbjct: 122 ELYYAITESSSK-LGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGA 180
Query: 215 FLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE-QNATKLLNK 273
L+R++MGED+FWAIRGGGG +G I +WKI L+ VP VTVF V + + AT LL+K
Sbjct: 181 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 240
Query: 274 WQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQD-SFPELGLTKEDCK 332
WQ++A+ + ED +S L + V L F G+ + + D FPELGL +ED
Sbjct: 241 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 299
Query: 333 EMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFE 392
EM++ ES YL G E ++ L+ F +R F K D EP+P +AF G+ +
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLK---FDERAFKTKVDLTKEPLPSKAFYGLLE---R 353
Query: 393 QDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNML 452
++ NG + +GG++S+IS P+PHR+G + Y W Q ++ L
Sbjct: 354 LSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE-QKKKTEFLDWL 412
Query: 453 RTLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRL 508
++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL
Sbjct: 413 EKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERL 472
Query: 509 VHVKTMVDPENFFRNEQSIPP 529
+ KT++DP N F + QSIPP
Sbjct: 473 IRAKTLIDPNNVFNHPQSIPP 493
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 111/469 (23%), Positives = 192/469 (40%), Gaps = 52/469 (11%)
Query: 79 PLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISV 138
P I + IQ+AV+C+KK L++ +SGGH + + +++ L ++ +
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDV-I 95
Query: 139 DVEDKT--AWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKY 196
DKT A VE GA +G L + +K ++ GTCP V +
Sbjct: 96 SYNDKTGIAHVEPGARLGHLATVLNDKYGRAISH--GTCPGVGISGHFAHGGFGFSSHMH 153
Query: 197 GAAADHIVDAHMIDVKGRFLNRESM-GEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVT 255
G A D +V ++ GR + + DLFW I+ G G++FGI+ WK+ P +T
Sbjct: 154 GLAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLATFPAPKVLT 212
Query: 256 VFAVPRTLE-QNATKLLNKWQYIADRVHEDLFISP----FLFRENSTMVSLFTSLFLGGV 310
F V TL +N T L + + D +++P F + L+ G
Sbjct: 213 RFGV--TLNWKNKTSALKGIEAVEDYAR---WVAPREVNFRIGDYGAGNPGIEGLYYGTP 267
Query: 311 DRLLRLMQ---DSFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPF 367
++ Q D+ P G + ++ES++ F+ + I P F
Sbjct: 268 EQWRAAFQPLLDTLPA-GYVVNPTTSLNWIESVLSYSNFDHVDFITPQ-------PVENF 319
Query: 368 IGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFP---YGGK---ISEISESEIPYP 421
K+ L + I +A + D +F+ K F+ +GGK +++++ +E YP
Sbjct: 320 YAKSLTL-KSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYP 378
Query: 422 HRAGNIYTLLYYAEWGQEAIDDAY-QRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIG 480
HR ++ + +Y + + Y + L N +T + K+ YINY D +
Sbjct: 379 HR-DKLWLIQFYDRYDN---NQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMD 434
Query: 481 TNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 529
+ K Y+ N RL +K DP + F Q++ P
Sbjct: 435 RDYAT------------KVYYGENLARLQKLKAKFDPTDRFYYPQAVRP 471
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 114/491 (23%), Positives = 200/491 (40%), Gaps = 63/491 (12%)
Query: 71 FSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDL 130
F+ + P I P +I AAV+C G+QI + GGH + + ++++L
Sbjct: 35 FNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLEL 94
Query: 131 INFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXX 190
+SVD ++ A ++ GA +G + ++ L+ GTCP+V
Sbjct: 95 DRMYRVSVD-DNNVATIQGGARLGYTALELLDQGNRALSH--GTCPAVGVGGHVLGGGYG 151
Query: 191 ALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFWAIRGGGGASFGIIVSWKINLVA 249
+G D ++ A ++ ++ E+ DLFWA+RGGGG F I+ ++ N
Sbjct: 152 FATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFE 210
Query: 250 VPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSL------FT 303
P +T + V T N+ Q++A + + RE S + + +
Sbjct: 211 APEIITTYQVTTT--------WNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWE 262
Query: 304 SLFLGGVDRLLRLMQDSFPELGLTKEDCK--EMTFVESI-VYLDGFEIRESIDMDVLRGR 360
F G L +++Q + G K E + I YL G ++ + + DV
Sbjct: 263 GNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDV---- 318
Query: 361 NFPKRPFIGKADYLTEP-IPEEAFQGIYDIFFEQDQKTNGLLVFFPY---GGK---ISEI 413
F A+ LT P + +EA Q D F+ G + + GGK ++ +
Sbjct: 319 ---HEYFY--ANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAV 373
Query: 414 SESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVA-------KN 466
S E Y HR ++ +Y ++I D + F +M +VA ++
Sbjct: 374 SNDETAYAHR-DQLWLWQFY-----DSIYDYENNTSPYPESGFEFMQGFVATIEDTLPED 427
Query: 467 PRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQS 526
+ Y NY D + + +EA K Y++ N +L +K DPE+ F N S
Sbjct: 428 RKGKYFNYADTTL---------TKEEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVS 475
Query: 527 IPPFNLVKDEL 537
+ P ++ +L
Sbjct: 476 VEPIAYLEQKL 486
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 113/491 (23%), Positives = 199/491 (40%), Gaps = 63/491 (12%)
Query: 71 FSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDL 130
F+ + P I P +I AAV+C G+QI + GGH + + ++++L
Sbjct: 35 FNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLEL 94
Query: 131 INFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXX 190
+SVD ++ A ++ GA +G + ++ L+ GT P+V
Sbjct: 95 DRMYRVSVD-DNNVATIQGGARLGYTALELLDQGNRALSH--GTAPAVGVGGHVLGGGYG 151
Query: 191 ALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFWAIRGGGGASFGIIVSWKINLVA 249
+G D ++ A ++ ++ E+ DLFWA+RGGGG F I+ ++ N
Sbjct: 152 FATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFE 210
Query: 250 VPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSL------FT 303
P +T + V T N+ Q++A + + RE S + + +
Sbjct: 211 APEIITTYQVTTT--------WNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWE 262
Query: 304 SLFLGGVDRLLRLMQDSFPELGLTKEDCK--EMTFVESI-VYLDGFEIRESIDMDVLRGR 360
F G L +++Q + G K E + I YL G ++ + + DV
Sbjct: 263 GNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDV---- 318
Query: 361 NFPKRPFIGKADYLTEP-IPEEAFQGIYDIFFEQDQKTNGLLVFFPY---GGK---ISEI 413
F A+ LT P + +EA Q D F+ G + + GGK ++ +
Sbjct: 319 ---HEYFY--ANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAV 373
Query: 414 SESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVA-------KN 466
S E Y HR ++ +Y ++I D + F +M +VA ++
Sbjct: 374 SNDETAYAHR-DQLWLWQFY-----DSIYDYENNTSPYPESGFEFMQGFVATIEDTLPED 427
Query: 467 PRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQS 526
+ Y NY D + + +EA K Y++ N +L +K DPE+ F N S
Sbjct: 428 RKGKYFNYADTTL---------TKEEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVS 475
Query: 527 IPPFNLVKDEL 537
+ P ++ +L
Sbjct: 476 VEPIAYLEQKL 486
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 113/468 (24%), Positives = 183/468 (39%), Gaps = 65/468 (13%)
Query: 78 KPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEIS 137
+P I ++ +V+ + NGL+I VRSGGH+ G + ++ I++DL + I
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYA--TNDGGIVLDLRLMNSIH 95
Query: 138 VDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYG 197
+D A + G G L + E ++ LA G P V L KYG
Sbjct: 96 IDTAGSRARIGGGVISGDL---VKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYG 152
Query: 198 AAADHIVDAHMIDVKGRFL-NRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVT- 255
A+D+I+ A ++ G + + +LFWA+R G G +FG++ ++ L +P +
Sbjct: 153 LASDNILGATLVTATGDVIYCSDDERPELFWAVR-GAGPNFGVVTEVEVQLYELPRKMLA 211
Query: 256 --VFAVPRTLEQNA--TKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVD 311
+ P E T LL+ +AD ++ +F+ R S V + LGG+D
Sbjct: 212 GFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVG---HLGGLD 268
Query: 312 RLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDG----FEIRES---IDMDVLRGRNFPK 364
R + LG T D + + +V L+ FE S ID ++ P
Sbjct: 269 IAERDIA-RLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIA----MPN 323
Query: 365 RPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGL---LVFFPYGGKISEISESEIPYP 421
F EA G D F + + + P+G + P
Sbjct: 324 ARF------------AEAIAGNLDKFVSEPASGGSVKLEIEGMPFG------NPKRTPAR 365
Query: 422 HRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGT 481
HR + +L AEW A +++ + R L + A + +
Sbjct: 366 HR--DAMGVLALAEWSGAA--PGSEKYPELARELDAALL--------RAGVTTSGFGLLN 413
Query: 482 NNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 529
NN S A + + Y + RL VK DPEN FR+ +I P
Sbjct: 414 NN-----SEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 117/480 (24%), Positives = 190/480 (39%), Gaps = 43/480 (8%)
Query: 78 KPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFI--IIDLINFSE 135
+P + ++ AV + G +I VRSGGH EG D P + +ID+ +
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFV---DDPAVRAVIDMSQMRQ 111
Query: 136 ISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRK 195
+ D + VE GAT+G+ YR + P G CP V L R+
Sbjct: 112 VFYDSGKRAFAVEPGATLGE-TYRALYLDWGV-TIPAGVCPQVGVGGHVLGGGYGPLSRR 169
Query: 196 YGAAADHI--VDAHMIDVKGRFLN--RESMGED----LFWAIRGGGGASFGIIVSWKINL 247
G ADH+ V+ ++D GR S +D L+WA GGGG +FGI+ +
Sbjct: 170 DGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRT 229
Query: 248 VAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPF-----LFRENSTMVSLF 302
T +P+ ++ W + A + E+ F + NS + +
Sbjct: 230 PGATGTDPSQLLPKAPTSTLRHIVT-WDWSA--LTEEAFTRIIDNHGAWHQSNSAAGTPY 286
Query: 303 TSL---FLGGVDRLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDGFE--IRESID--MD 355
S+ F +++ D + GL + FV ++ G E ++ S + +
Sbjct: 287 ASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTEPWLR 346
Query: 356 VLRGRNFPKRPF---IGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISE 412
F F K YL +P +Y D + G + + YGGK++
Sbjct: 347 ATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYR-HLSADSQVWGEVSLYSYGGKVNS 405
Query: 413 ISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVN-MLRTLFNYMTPYVAKNPRT-- 469
+ E+ R +I + A W A DDA + + R +F + RT
Sbjct: 406 VPETATATAQR-DSIIKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEG 464
Query: 470 AYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 529
+INY D+D+ + + + V W Y+K N+ RL VK DP + FR+ S+ P
Sbjct: 465 TFINYPDVDL-VDERWNTSGVP----WYTLYYKGNYPRLQKVKARWDPRDVFRHALSVRP 519
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 121/500 (24%), Positives = 198/500 (39%), Gaps = 77/500 (15%)
Query: 76 NPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSE 135
N +P +I ++ AV+ + + G ++ VRSGGH E DV +IID+ +E
Sbjct: 55 NGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTE 113
Query: 136 ISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRK 195
I+ D +E G T+ ++ Y N+ P G C V L R+
Sbjct: 114 IAYDPSMNAFLIEPGNTLSEV-YEKLYLGWNV-TIPGGVCGGVGVGGHICGGGYGPLSRQ 171
Query: 196 YGAAADHIVDAHMIDV----KGRFL----NRESMGEDLFWAIRGGGGASFGIIVSWKINL 247
+G+ D++ ++ V K R + R+ DL+WA GGGG +FG++ + +
Sbjct: 172 FGSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMR- 230
Query: 248 VAVPSTVTVFAVPRTLEQNATKLLNK-------------WQYIADRVHEDLFISPFLFRE 294
VP + +N +LL K W + + L + + E
Sbjct: 231 -----------VPEDVGRNPERLLPKPPATLLTSTVTFDWAGMTEAAFSRLLRNHGEWYE 279
Query: 295 -----NSTMVSLFTSLFLGGVDRLLRLMQDSFP---ELGLTKEDCKEMTFVESIVYLDGF 346
+S L++ L +G + + + + F ++ T+ D + + +DG
Sbjct: 280 RNSGPDSPYTGLWSQLMIG--NEVPGMGESGFMMPIQVDATRPDARRLLDAHIEAVIDGV 337
Query: 347 ---EIRESIDMDVL-----RGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTN 398
E+ E I+ L RG P KA YL + + + Q +Y+ D
Sbjct: 338 PPAEVPEPIEQRWLASTPGRGGRGPASKT--KAGYLRKRLTDRQIQAVYENMTHMDGIDY 395
Query: 399 GLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEW---GQEAIDDAYQRHVNMLRTL 455
G + YGGK++ + + P R I + Y W G EA +H+ +R L
Sbjct: 396 GAVWLIGYGGKVNTVDPAATALPQRDA-ILKVNYITGWANPGNEA------KHLTWVRKL 448
Query: 456 FNYMTPYVAKNP------RTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLV 509
+ + P AYINY D D+ + L + V W Y+K N RL
Sbjct: 449 YADVYAETGGVPVPNDVSDGAYINYPDSDL-ADPGLNTSGVP----WHDLYYKGNHPRLR 503
Query: 510 HVKTMVDPENFFRNEQSIPP 529
VK DP N F + SI P
Sbjct: 504 KVKAAYDPRNHFHHALSIRP 523
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 116/487 (23%), Positives = 190/487 (39%), Gaps = 58/487 (11%)
Query: 77 PKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI 136
P+ F+ P ++ A+++ + G + RSGGH + +++DL N I
Sbjct: 35 PEEFFL--PATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRD-LVLDLHNLHAI 91
Query: 137 SVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKY 196
+ V SGATV Q+ + + A P+G C +V L R+
Sbjct: 92 GPAADGAGVRVGSGATVDQVQKALFRRWN--AALPLGACSAVGMGGLVAGGGYGPLSRQL 149
Query: 197 GAAADHI--VDAHMID-------VKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINL 247
G DH+ V+ ++D V R + +GE LFWA GGGG +FG++ +++
Sbjct: 150 GLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGGNFGVVTAYEFRS 208
Query: 248 VAVPSTVTVFAVPRTLEQ-NATKLLNKWQYIADRVHEDLFISPFLFRE-----NSTMVSL 301
+T V +PR + + K++ W I + + F + E S SL
Sbjct: 209 PEHLATEPV-GLPRAAGRLHVQKVVFPWAMIDETSFVTVMRRFFEWHERHSEPGSPESSL 267
Query: 302 FTSLFLGGVDR-LLRLM----QDSFPELGLTKEDCKEMTFVESIV---------YLDGFE 347
F + F+ V +L+LM D PE + +T +V +L G
Sbjct: 268 FATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGTGVVGIPRGGVMSWLTGTR 327
Query: 348 IRESIDM-DVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPY 406
D DV+ R+ K+ Y +E ++ ++F Y
Sbjct: 328 YMSQADCGDVMGARS------ASKSAYHRAAPTDEQLSVLHRHLHADHPGQASYVMFNSY 381
Query: 407 GGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTL----FNYMTPY 462
GG+I+ S+ P R ++ +++ W +D+ H+ LR L F
Sbjct: 382 GGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDAELDEL---HLGWLRGLYEEFFAGTGGV 437
Query: 463 VAKNPRT--AYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENF 520
RT YINY D D+ L + W Y+K+N+ RL K DP N
Sbjct: 438 PVTGGRTDGCYINYPDADL-----LDPARNRSGEPWHHLYYKDNYARLRSAKRAWDPLNT 492
Query: 521 FRNEQSI 527
F + SI
Sbjct: 493 FHHSMSI 499
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Query: 67 QNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFI 126
+NL F +P+ + ++ +EI+ + + ++G ++ VRSGGH +E + SDV +
Sbjct: 51 ENLRFV--GDPEEIHLVG--SAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RV 105
Query: 127 IIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXX 186
++D+ S + D E VE+GAT+G + Y+ + + P G CP V
Sbjct: 106 VMDMSRLSAVGFDEERGAFAVEAGATLGAV-YKTLFRVWG-VTLPGGACPDVGAGGHILG 163
Query: 187 XXXXALLRKYGAAAD--HIVDAHMIDVKGR----FLNRESM--GEDLFWA 228
L R +G+ D H V+ ++D G RE DL+WA
Sbjct: 164 GGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWA 213
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 399 GLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNY 458
G++ YGGK++ + R +I ++Y W A D HV +R L+
Sbjct: 400 GVVALIAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPV---HVRWIRELYRD 455
Query: 459 M------TPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVK 512
+ P AY+NY D+D+ + + + V W + Y+K+ + RL VK
Sbjct: 456 VYADTGGVPVPGGAADGAYVNYPDVDL-ADEEWNTSGVP----WSELYYKDAYPRLQAVK 510
Query: 513 TMVDPENFFRNEQS--IPP 529
DP N FR+ S +PP
Sbjct: 511 ARWDPRNVFRHALSVRVPP 529
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 28/228 (12%)
Query: 43 SDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCS-KKN 101
+D +SE L Q A I F KPL ++ P +I AVK + + +
Sbjct: 27 TDGVSESLNIQGEILCGGA-AADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSD 85
Query: 102 GLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDV-----EDKTAWVE-SGATVGQ 155
L + R GH G + +++D +E +V D TA+V+ SG + +
Sbjct: 86 KLTVAARGNGHSINGQAXAEG--GLVVDXSTTAENHFEVGYLSGGDATAFVDVSGGALWE 143
Query: 156 -------LNYRIAEKS-QNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVDAH 207
Y +A +S + L VG S +YG ++ +
Sbjct: 144 DVLKRCVSEYGLAPRSWTDYLGLTVGGTLS--------NAGVSGQAFRYGPQTSNVTELD 195
Query: 208 MIDVKGRFLN-RESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTV 254
++ G + E +LF+++ GG G FGII ++ L P V
Sbjct: 196 VVTGNGDVVTCSEIENSELFFSVLGGLG-QFGIITRARVLLQPAPDXV 242
>pdb|1THG|A Chain A, 1.8 Angstroms Refined Structure Of The Lipase From
Geotrichum Candidum
Length = 544
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 256 VFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFL 291
+F PR + +ATK +N+W Y++ +H + PFL
Sbjct: 427 LFQSPRRVMLSATKDVNRWTYLSTHLHN---LVPFL 459
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 79 PLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPF--IIIDLINFSEI 136
P +T V ++Q VK ++ + I S G + G S + V +I+DL ++I
Sbjct: 57 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKKMNKI 115
Query: 137 -SVDVEDKTAWVESGATVGQLNYRIAEKS 164
+D E A VE G T GQ+ I E +
Sbjct: 116 IKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 79 PLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPF--IIIDLINFSEI 136
P +T V ++Q VK ++ + I S G + G S + V +I+DL ++I
Sbjct: 58 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKKMNKI 116
Query: 137 -SVDVEDKTAWVESGATVGQLNYRIAEKS 164
+D E A VE G T GQ+ I E +
Sbjct: 117 IKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 197 GAAADHIVDAHMIDVKGRFLNRESMGED--LFWAIRGGGGASFGIIVSWKINLVAVPSTV 254
G+ +H+ ++ G + GED LFWA GG G + GII+ I + P++
Sbjct: 160 GSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLT-GIIMRATIEM--TPTST 216
Query: 255 TVF 257
F
Sbjct: 217 AYF 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,507,485
Number of Sequences: 62578
Number of extensions: 644875
Number of successful extensions: 1379
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 31
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)