Query 009342
Match_columns 537
No_of_seqs 296 out of 2255
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 11:56:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.9E-39 6.3E-44 344.7 43.9 205 47-263 40-254 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 9E-33 2E-37 292.8 38.4 196 70-278 6-204 (438)
3 TIGR01679 bact_FAD_ox FAD-link 100.0 6.4E-32 1.4E-36 286.0 33.8 174 71-254 4-179 (419)
4 PLN02805 D-lactate dehydrogena 100.0 1.1E-32 2.4E-37 298.4 23.9 192 77-273 132-330 (555)
5 COG0277 GlcD FAD/FMN-containin 100.0 6.7E-32 1.5E-36 290.7 28.9 185 75-263 28-219 (459)
6 TIGR01676 GLDHase galactonolac 100.0 2.8E-32 6E-37 290.9 23.1 197 70-278 53-251 (541)
7 PRK11230 glycolate oxidase sub 100.0 1.2E-31 2.6E-36 288.9 23.2 195 75-272 52-252 (499)
8 TIGR01677 pln_FAD_oxido plant- 100.0 2.5E-31 5.4E-36 287.4 22.5 180 71-254 24-215 (557)
9 KOG1231 Proteins containing th 100.0 2.7E-29 5.9E-34 253.1 27.5 213 26-252 21-240 (505)
10 TIGR00387 glcD glycolate oxida 100.0 7.6E-30 1.7E-34 270.3 20.3 189 82-273 1-196 (413)
11 PRK11282 glcE glycolate oxidas 100.0 1.2E-29 2.6E-34 260.2 20.4 169 87-261 3-180 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 2.9E-28 6.3E-33 262.1 22.8 198 70-279 88-287 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 6.3E-27 1.4E-31 211.1 14.5 136 79-217 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 2.2E-24 4.8E-29 218.5 14.4 162 77-251 29-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 2.1E-22 4.6E-27 212.0 18.4 194 76-274 36-289 (564)
16 PRK13903 murB UDP-N-acetylenol 99.9 1.6E-21 3.5E-26 200.3 15.5 165 76-251 30-197 (363)
17 PRK12436 UDP-N-acetylenolpyruv 99.9 1.2E-21 2.5E-26 198.4 13.9 162 76-250 34-197 (305)
18 KOG4730 D-arabinono-1, 4-lacto 99.9 6.1E-21 1.3E-25 193.0 14.9 182 71-259 42-226 (518)
19 TIGR00179 murB UDP-N-acetyleno 99.9 3.9E-21 8.4E-26 193.0 12.6 162 76-249 10-174 (284)
20 PRK14652 UDP-N-acetylenolpyruv 99.9 5.7E-21 1.2E-25 193.0 13.8 162 76-251 33-196 (302)
21 PRK13906 murB UDP-N-acetylenol 99.8 7.5E-21 1.6E-25 192.6 14.7 162 77-250 35-197 (307)
22 KOG1232 Proteins containing th 99.8 3.4E-20 7.3E-25 183.2 11.1 187 66-255 77-270 (511)
23 PRK14649 UDP-N-acetylenolpyruv 99.8 8.2E-19 1.8E-23 176.9 17.2 165 77-251 19-193 (295)
24 KOG1233 Alkyl-dihydroxyacetone 99.8 5.9E-18 1.3E-22 167.6 15.2 191 72-264 154-353 (613)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 5.6E-17 1.2E-21 163.0 13.3 159 78-251 33-194 (297)
26 PF08031 BBE: Berberine and be 99.7 2.7E-17 5.9E-22 118.7 3.2 47 470-528 1-47 (47)
27 COG0812 MurB UDP-N-acetylmuram 99.7 8.1E-16 1.7E-20 151.8 14.2 165 76-250 18-183 (291)
28 PRK14650 UDP-N-acetylenolpyruv 99.6 1.2E-15 2.5E-20 153.0 13.5 162 78-251 32-195 (302)
29 PRK00046 murB UDP-N-acetylenol 99.6 1.4E-15 3.1E-20 154.6 12.8 161 78-250 20-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.6 9.4E-15 2E-19 148.4 13.7 165 77-251 28-237 (354)
31 KOG1262 FAD-binding protein DI 99.4 7.1E-14 1.5E-18 139.2 6.0 124 128-254 106-232 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.4 9.5E-13 2.1E-17 130.3 12.5 150 78-250 20-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.1 2.9E-10 6.3E-15 111.6 10.0 143 78-251 18-160 (257)
34 PF00941 FAD_binding_5: FAD bi 94.2 0.082 1.8E-06 49.2 5.3 75 79-159 2-80 (171)
35 PRK09799 putative oxidoreducta 94.0 0.17 3.6E-06 50.4 7.4 139 81-246 4-155 (258)
36 TIGR03312 Se_sel_red_FAD proba 92.5 0.37 8E-06 48.0 7.3 138 82-246 4-154 (257)
37 PF09265 Cytokin-bind: Cytokin 91.5 0.52 1.1E-05 47.2 7.0 33 494-527 248-280 (281)
38 TIGR02963 xanthine_xdhA xanthi 90.9 0.63 1.4E-05 50.4 7.3 153 79-247 192-358 (467)
39 PRK09971 xanthine dehydrogenas 88.3 0.75 1.6E-05 46.7 5.2 73 81-158 6-82 (291)
40 TIGR03195 4hydrxCoA_B 4-hydrox 87.5 0.95 2.1E-05 46.5 5.4 72 81-158 6-81 (321)
41 TIGR03199 pucC xanthine dehydr 86.6 0.91 2E-05 45.4 4.6 70 85-158 1-73 (264)
42 PLN00107 FAD-dependent oxidore 84.6 3.7 8E-05 40.5 7.5 28 496-525 171-198 (257)
43 PF02913 FAD-oxidase_C: FAD li 81.9 3.7 8E-05 39.7 6.6 27 496-522 217-244 (248)
44 PF04030 ALO: D-arabinono-1,4- 78.7 1.3 2.9E-05 43.9 2.3 28 495-524 227-254 (259)
45 PLN02906 xanthine dehydrogenas 78.5 3.5 7.5E-05 50.6 6.1 80 80-163 229-310 (1319)
46 PLN00192 aldehyde oxidase 76.2 6.5 0.00014 48.3 7.5 84 79-163 233-317 (1344)
47 TIGR02969 mam_aldehyde_ox alde 74.6 7.3 0.00016 47.9 7.3 78 80-161 237-316 (1330)
48 COG4981 Enoyl reductase domain 72.7 9.8 0.00021 41.2 6.8 79 33-116 111-196 (717)
49 TIGR01677 pln_FAD_oxido plant- 72.4 22 0.00048 39.5 9.9 28 496-525 477-504 (557)
50 TIGR00387 glcD glycolate oxida 63.7 4.9 0.00011 42.9 2.5 28 495-522 382-410 (413)
51 COG1319 CoxM Aerobic-type carb 63.1 22 0.00048 35.8 6.9 75 79-157 3-80 (284)
52 COG4630 XdhA Xanthine dehydrog 58.8 19 0.00041 37.4 5.5 140 80-231 204-353 (493)
53 PLN02805 D-lactate dehydrogena 58.2 24 0.00052 39.2 6.7 32 494-525 515-547 (555)
54 KOG4730 D-arabinono-1, 4-lacto 58.1 5.4 0.00012 42.3 1.5 21 503-523 485-505 (518)
55 COG0351 ThiD Hydroxymethylpyri 51.8 47 0.001 33.1 6.8 109 26-166 116-227 (263)
56 PF02601 Exonuc_VII_L: Exonucl 51.7 21 0.00046 36.5 4.7 58 48-112 18-87 (319)
57 PRK11230 glycolate oxidase sub 46.4 14 0.00031 40.5 2.6 31 495-525 439-470 (499)
58 PRK00286 xseA exodeoxyribonucl 41.9 31 0.00066 37.1 4.2 58 48-112 139-204 (438)
59 PRK11282 glcE glycolate oxidas 41.0 17 0.00037 37.9 2.1 20 503-522 324-344 (352)
60 TIGR01676 GLDHase galactonolac 31.8 26 0.00057 38.7 1.8 20 505-524 515-534 (541)
61 COG1519 KdtA 3-deoxy-D-manno-o 30.9 2.8E+02 0.0062 29.6 9.0 34 78-111 260-293 (419)
62 TIGR00237 xseA exodeoxyribonuc 27.7 43 0.00093 36.0 2.5 63 48-112 133-199 (432)
63 PLN03158 methionine aminopepti 26.6 96 0.0021 32.9 4.8 65 87-154 275-340 (396)
64 PLN02465 L-galactono-1,4-lacto 26.1 4.6E+02 0.01 29.3 10.2 28 494-524 537-564 (573)
65 COG4359 Uncharacterized conser 25.3 72 0.0016 30.0 3.1 26 91-116 78-103 (220)
66 TIGR00178 monomer_idh isocitra 24.6 4.3E+02 0.0093 29.5 9.1 134 88-230 312-460 (741)
67 PF03392 OS-D: Insect pheromon 24.0 36 0.00079 28.3 0.9 14 509-522 79-92 (95)
68 COG1570 XseA Exonuclease VII, 23.9 50 0.0011 35.3 2.1 58 48-112 139-205 (440)
69 cd07033 TPP_PYR_DXS_TK_like Py 23.2 1.1E+02 0.0025 27.5 4.1 30 80-109 125-154 (156)
70 KOG3282 Uncharacterized conser 22.5 1.1E+02 0.0024 28.6 3.7 36 70-107 118-153 (190)
71 PF02779 Transket_pyr: Transke 22.1 1.3E+02 0.0029 27.7 4.4 31 80-110 139-171 (178)
72 KOG2499 Beta-N-acetylhexosamin 21.0 82 0.0018 34.0 2.9 91 3-113 183-276 (542)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.9e-39 Score=344.69 Aligned_cols=205 Identities=20% Similarity=0.281 Sum_probs=177.5
Q ss_pred CceEEcCCCcCcHHHHHhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHH--hCCCeEEEEcCCCCCCCCCccCCCC
Q 009342 47 SEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSK--KNGLQIRVRSGGHDHEGLSSISDVP 124 (537)
Q Consensus 47 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~~~~~~~~ 124 (537)
.+.+.+ +...++.+ ...|+......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+...+
T Consensus 40 ~~~v~~-d~~~~~~~------s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~-- 110 (525)
T PLN02441 40 DGHLSF-DPVSTASA------SKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG-- 110 (525)
T ss_pred CceEEe-CHHHHHHH------hcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence 555543 44556554 23577777779999999999999999999997 67999999999999999887654
Q ss_pred eEEEEecCccc-------EEEeCCCCeEEEcCCCCHHHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccC
Q 009342 125 FIIIDLINFSE-------ISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYG 197 (537)
Q Consensus 125 gividl~~l~~-------i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G 197 (537)
|++|||++||+ +++|.+..+|+|++|++|.++++++.++|+. ....+.+..+++||.+.+||+|..+.+||
T Consensus 111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~Gla--P~~~~d~~~~TVGG~ist~G~gg~s~ryG 188 (525)
T PLN02441 111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLA--PRSWTDYLYLTVGGTLSNAGISGQAFRHG 188 (525)
T ss_pred eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCc--cCCccccCceEEeEEcCCCCccccccccC
Confidence 89999999999 3788889999999999999999999999853 23345667889999999999999999999
Q ss_pred chhhheeeEEEEcccCeeee-ccCCCCchhhhhhhccCCceEEEEEEEEEEEecCCeEEEEEEeccc
Q 009342 198 AAADHIVDAHMIDVKGRFLN-RESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTL 263 (537)
Q Consensus 198 ~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf~a~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~ 263 (537)
+.+|+|+++||||+||++++ ++.+|+|||||++||+ |+|||||++|+|++|.|+.+.++.+.+..
T Consensus 189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~ 254 (525)
T PLN02441 189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD 254 (525)
T ss_pred cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence 99999999999999999997 7788999999999998 89999999999999999977666666654
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=9e-33 Score=292.79 Aligned_cols=196 Identities=23% Similarity=0.349 Sum_probs=170.4
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEc
Q 009342 70 IFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVE 148 (537)
Q Consensus 70 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~ 148 (537)
.|+......|.+|+.|+|++||+++|++|++++++++++|+|||+.+.... +|++|||++|++| ++|.++++|+|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~---~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT---DGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC---CeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 377777789999999999999999999999999999999999999876543 3799999999997 999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCceeec-cCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee-ccCCCCchh
Q 009342 149 SGATVGQLNYRIAEKSQNLLAFP-VGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLF 226 (537)
Q Consensus 149 ~G~~~~~l~~~l~~~g~~gl~~~-~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf 226 (537)
||+++.+|.+.|.++|+. ++ .|.++.++|||++++|+||. +.+||..+|+|++++||++||++++ +..+++|||
T Consensus 83 aG~~l~~L~~~L~~~Gl~---l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf 158 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYS---MSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVF 158 (438)
T ss_pred CCCCHHHHHHHHHHcCCE---ecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHH
Confidence 999999999999999965 44 57888999999999999996 7899999999999999999999997 677899999
Q ss_pred hhhhhccCCceEEEEEEEEEEEecCCeEEEEEEeccchhHHHHHHHHHHHHH
Q 009342 227 WAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIA 278 (537)
Q Consensus 227 ~a~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (537)
||.+||. |+|||||++|||++|........ .. ....++++.|++..
T Consensus 159 ~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 159 QAARVSL-GCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHW 204 (438)
T ss_pred HHHhcCC-CceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHh
Confidence 9999998 89999999999999987643221 11 12346677776654
No 3
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=6.4e-32 Score=285.97 Aligned_cols=174 Identities=22% Similarity=0.354 Sum_probs=155.0
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcC
Q 009342 71 FSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVES 149 (537)
Q Consensus 71 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~ 149 (537)
|+......|.+|+.|+|++||+++|+.|++ +++++|+|||+.+.+. . ++++|||++||+| ++|+++++|+|||
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~-~--~g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC-T--DGTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc-C--CCEEEEhhHcCCceeecCCCCEEEEcC
Confidence 777777899999999999999999999974 7999999999987654 2 2799999999997 9999999999999
Q ss_pred CCCHHHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee-ccCCCCchhhh
Q 009342 150 GATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFWA 228 (537)
Q Consensus 150 G~~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf~a 228 (537)
|+++.+|.+.|.++|+. +.+. |.+..++|||.+.+|+||.. ..||..+|+|++++||++||++++ ++.+|+|||||
T Consensus 78 G~~l~~l~~~L~~~G~~-l~~~-~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a 154 (419)
T TIGR01679 78 GTRLGALGPQLAQRGLG-LENQ-GDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLA 154 (419)
T ss_pred CCCHHHHHHHHHHcCCc-cccC-CCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHH
Confidence 99999999999999975 4333 44556789999999999974 689999999999999999999997 77789999999
Q ss_pred hhhccCCceEEEEEEEEEEEecCCeE
Q 009342 229 IRGGGGASFGIIVSWKINLVAVPSTV 254 (537)
Q Consensus 229 ~rGgg~g~~GiVt~~~~~~~p~~~~~ 254 (537)
+|||+ |+|||||++|||++|.....
T Consensus 155 ~~g~~-G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 155 ARVSL-GALGVISQVTLQTVALFRLR 179 (419)
T ss_pred HHhCC-CceEEEEEEEEEeecceEeE
Confidence 99998 89999999999999987643
No 4
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.1e-32 Score=298.42 Aligned_cols=192 Identities=21% Similarity=0.311 Sum_probs=169.6
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHH
Q 009342 77 PKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQ 155 (537)
Q Consensus 77 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~ 155 (537)
..|.+||+|+|++||+++|++|+++++|+++||||||+.|.+.... ++++|||++||+| ++|.++.+|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4799999999999999999999999999999999999998776543 5899999999998 7999999999999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee--cc----CCCCchhhhh
Q 009342 156 LNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN--RE----SMGEDLFWAI 229 (537)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~--~~----~~~~dLf~a~ 229 (537)
|+++|.++|+ .++.+.++.++|||+++++++|..+.+||.++|+|+++|||++||++++ +. ..++||||++
T Consensus 211 L~~~L~~~Gl---~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~ 287 (555)
T PLN02805 211 LNEYLEPYGL---FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLV 287 (555)
T ss_pred HHHHHHHcCC---EeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHh
Confidence 9999999985 5777777788999999999999999999999999999999999999995 21 2468999999
Q ss_pred hhccCCceEEEEEEEEEEEecCCeEEEEEEeccchhHHHHHHHH
Q 009342 230 RGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNK 273 (537)
Q Consensus 230 rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 273 (537)
+|+. |+|||||+++||++|.|+......+.|+..+++.+++..
T Consensus 288 ~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 288 IGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred ccCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 9998 899999999999999998766666667654445454443
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=6.7e-32 Score=290.71 Aligned_cols=185 Identities=24% Similarity=0.370 Sum_probs=162.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCH
Q 009342 75 ANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATV 153 (537)
Q Consensus 75 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~ 153 (537)
....|.+|+.|+|++||+++|++|.++++||++||+|||+.|.+... . +++|||++||+| ++|+++++++|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34578999999999999999999999999999999999999887766 3 899999999998 89999999999999999
Q ss_pred HHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee--c----cCCCCchhh
Q 009342 154 GQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN--R----ESMGEDLFW 227 (537)
Q Consensus 154 ~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~--~----~~~~~dLf~ 227 (537)
.+|.++|.++|+. +.+.+++..+++|||+++++++|..+.+||.+.|+|++++||++||++++ . +....||++
T Consensus 106 ~~l~~~l~~~G~~-~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~ 184 (459)
T COG0277 106 EDLEKALAPHGLF-LPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTA 184 (459)
T ss_pred HHHHHHHHHcCCc-cCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHH
Confidence 9999999999876 44444444479999999999999999999999999999999999999995 2 234589999
Q ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEeccc
Q 009342 228 AIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTL 263 (537)
Q Consensus 228 a~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~ 263 (537)
++.|+. |+|||||++|+|++|.|+........+..
T Consensus 185 l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 185 LFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred hcccCC-ccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 999988 89999999999999988755444444433
No 6
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2.8e-32 Score=290.85 Aligned_cols=197 Identities=17% Similarity=0.235 Sum_probs=170.3
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEc
Q 009342 70 IFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVE 148 (537)
Q Consensus 70 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~ 148 (537)
+|+......|..+++|+|++||+++|++|++++++|+++|+|||+.+.+... +.+|||++||+| ++|.++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 4999888999999999999999999999999999999999999999877654 357999999997 999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee-ccCCCCchhh
Q 009342 149 SGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFW 227 (537)
Q Consensus 149 ~G~~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf~ 227 (537)
||+++.+|.++|.++|+. + ...|.++.++|||++++|+||.. .+||..+|+|++++||++||++++ ++.+|+||||
T Consensus 130 AG~~l~~L~~~L~~~Gla-l-~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 206 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGIT-L-QNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFF 206 (541)
T ss_pred CCCCHHHHHHHHHHcCCE-e-ccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHH
Confidence 999999999999999965 2 23478888999999999999985 479999999999999999999997 7778999999
Q ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEeccchhHHHHHHHHHHHHH
Q 009342 228 AIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIA 278 (537)
Q Consensus 228 a~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (537)
|.|||+ |+|||||++|||++|.+.... .....+ ..++++.+.++.
T Consensus 207 Aargsl-G~LGVItevTLr~~Pa~~l~~-~~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 207 LARCGL-GGLGVVAEVTLQCVERQELVE-HTFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHhcCC-CceEeEEEEEEEEEeccceeE-EEEecC----HHHHHHHHHHHH
Confidence 999998 899999999999999987432 121122 345566666654
No 7
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.2e-31 Score=288.89 Aligned_cols=195 Identities=17% Similarity=0.289 Sum_probs=167.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCH
Q 009342 75 ANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATV 153 (537)
Q Consensus 75 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~ 153 (537)
....|.+||+|+|++||+++|++|+++++||++||+||++.|.+.... ++++|||++||+| ++|+++++|+||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 345899999999999999999999999999999999999987665443 4899999999997 99999999999999999
Q ss_pred HHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee-cc----CCCCchhhh
Q 009342 154 GQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN-RE----SMGEDLFWA 228 (537)
Q Consensus 154 ~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~----~~~~dLf~a 228 (537)
.+|.++|.++|+. +...+++....+|||++.+++.|+.+.+||...|+|++++||++||++++ .. ..++||+|+
T Consensus 131 ~~L~~~l~~~Gl~-~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l 209 (499)
T PRK11230 131 LAISQAAAPHGLY-YAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLAL 209 (499)
T ss_pred HHHHHHHHHcCCe-eCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhh
Confidence 9999999999964 33334444567899999999999999999999999999999999999996 21 347899999
Q ss_pred hhhccCCceEEEEEEEEEEEecCCeEEEEEEeccchhHHHHHHH
Q 009342 229 IRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLN 272 (537)
Q Consensus 229 ~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 272 (537)
++|+. |+|||||++|||++|.|+....+.+.|...+++.+++.
T Consensus 210 ~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~ 252 (499)
T PRK11230 210 FTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVG 252 (499)
T ss_pred hccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHH
Confidence 99998 89999999999999999876666666655444444443
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.98 E-value=2.5e-31 Score=287.37 Aligned_cols=180 Identities=19% Similarity=0.222 Sum_probs=159.4
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEc-CCCCCCCCCccCC-CCeEEEEecCccc-EEEeCCCCeEEE
Q 009342 71 FSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRS-GGHDHEGLSSISD-VPFIIIDLINFSE-ISVDVEDKTAWV 147 (537)
Q Consensus 71 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g-gGh~~~g~~~~~~-~~gividl~~l~~-i~~d~~~~~v~v 147 (537)
|+......|.+|+.|+|++||+++|++|+++++||+++| +||++.+.+...+ +++++|||++||+ +++|.++++|+|
T Consensus 24 Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV 103 (557)
T TIGR01677 24 FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTV 103 (557)
T ss_pred cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEE
Confidence 999889999999999999999999999999999999996 6999877554331 1369999999999 599999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCceeeccC-CCCcccchhhhcCCCCCCcc-cccCchhhheeeEEEEcccC------eeee-c
Q 009342 148 ESGATVGQLNYRIAEKSQNLLAFPVG-TCPSVGVGGHFSGGGYGALL-RKYGAAADHIVDAHMIDVKG------RFLN-R 218 (537)
Q Consensus 148 ~~G~~~~~l~~~l~~~g~~gl~~~~g-~~~~vgvgG~~~ggg~g~~s-~~~G~~~d~v~~~~vV~a~G------~~~~-~ 218 (537)
+||+++.+|.+.|.++|+. ++.+ .+..++|||.+.+|+||... +.+|..+|+|++++||++|| ++++ +
T Consensus 104 ~AG~~l~~L~~~L~~~Gla---l~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s 180 (557)
T TIGR01677 104 ESGMSLRELIVEAEKAGLA---LPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILS 180 (557)
T ss_pred CCCCcHHHHHHHHHHcCCE---eccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeC
Confidence 9999999999999999964 5443 45678999999999999766 68999999999999999998 7776 6
Q ss_pred cCCCCchhhhhhhccCCceEEEEEEEEEEEecCCeE
Q 009342 219 ESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTV 254 (537)
Q Consensus 219 ~~~~~dLf~a~rGgg~g~~GiVt~~~~~~~p~~~~~ 254 (537)
..+|+|||||+|||+ |+|||||++|||++|.+...
T Consensus 181 ~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 181 EGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred CCCCHHHHHhhccCC-CccEeeeEEEEEEEccccce
Confidence 678999999999998 89999999999999987643
No 9
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=2.7e-29 Score=253.08 Aligned_cols=213 Identities=21% Similarity=0.355 Sum_probs=169.9
Q ss_pred hhhccchhhHHHHhhhcCCCCCceEEcCCCcCcHHHHHhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhC--CC
Q 009342 26 ALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKN--GL 103 (537)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~--~~ 103 (537)
.+-....+++..-|.... .+.+-+ .......+ +.- |....+..|.+|+.|+|+|||+.++|.|... ++
T Consensus 21 p~~~ks~~~~~~~l~~~~---~~~~~~-~~~~~a~~--s~d----Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~ 90 (505)
T KOG1231|consen 21 PVITKSSESLKKILGNSL---EGTLES-DPSSVAHA--STD----FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNF 90 (505)
T ss_pred chhhccCcchhhhcCccc---cceeec-cchhhhhh--hhh----ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcc
Confidence 444566666666665432 333322 11122222 112 3333456999999999999999999999999 99
Q ss_pred eEEEEcCCCCCCCCCccCCCCeEEEEecC---cccE-EEeCCCCeEEEcCCCCHHHHHHHHHHhcCCceeeccCCCCccc
Q 009342 104 QIRVRSGGHDHEGLSSISDVPFIIIDLIN---FSEI-SVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVG 179 (537)
Q Consensus 104 ~~~~~ggGh~~~g~~~~~~~~gividl~~---l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~gl~~~~g~~~~vg 179 (537)
||++||+|||..|.+.... +|+||.|.. |+++ .+..++..|.|.||..|-+|.+++.++|+. ++..-.....+
T Consensus 91 pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~--p~swtDyl~lt 167 (505)
T KOG1231|consen 91 PVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLS--PFSWTDYLPLT 167 (505)
T ss_pred eeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCC--ccCcCCcccee
Confidence 9999999999999887743 487777653 5565 566677999999999999999999999974 33333344588
Q ss_pred chhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee-ccCCCCchhhhhhhccCCceEEEEEEEEEEEecCC
Q 009342 180 VGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPS 252 (537)
Q Consensus 180 vgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf~a~rGgg~g~~GiVt~~~~~~~p~~~ 252 (537)
|||.++.+|+|..+.+||...+||++++|||++|++++ ++..|++||.++-||. |+|||||+++++++|+|.
T Consensus 168 VGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 168 VGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred ecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeeeeeeccC-cceeeEEEEEEEeccCCc
Confidence 99999999999999999999999999999999999997 7778999999999999 899999999999999994
No 10
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=7.6e-30 Score=270.34 Aligned_cols=189 Identities=19% Similarity=0.268 Sum_probs=162.0
Q ss_pred EEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHHHHHH
Q 009342 82 IITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQLNYRI 160 (537)
Q Consensus 82 vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l 160 (537)
||+|+|++||+++|++|+++++|+++||||||+.|.+...+ ++++|||++||+| ++|+++.+++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987666543 5899999999998 999999999999999999999999
Q ss_pred HHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee-c-----cCCCCchhhhhhhccC
Q 009342 161 AEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN-R-----ESMGEDLFWAIRGGGG 234 (537)
Q Consensus 161 ~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~-----~~~~~dLf~a~rGgg~ 234 (537)
.++|+. +.+-+++....++||++.++++|..+.+||.+.|+|++++||++||++++ . ...++||+|.+.|+.
T Consensus 80 ~~~gl~-~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~- 157 (413)
T TIGR00387 80 EEHNLF-YPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE- 157 (413)
T ss_pred HHcCCe-eCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC-
Confidence 999965 33334444567899999999999999999999999999999999999996 2 234679999999998
Q ss_pred CceEEEEEEEEEEEecCCeEEEEEEeccchhHHHHHHHH
Q 009342 235 ASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNK 273 (537)
Q Consensus 235 g~~GiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 273 (537)
|+|||||+++||++|.|+....+.+.|...+++.+++..
T Consensus 158 GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~ 196 (413)
T TIGR00387 158 GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYD 196 (413)
T ss_pred ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHH
Confidence 899999999999999998766666666654444444433
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.2e-29 Score=260.16 Aligned_cols=169 Identities=20% Similarity=0.305 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCC-CCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHHHHHHHHhc
Q 009342 87 HVSEIQAAVKCSKKNGLQIRVRSGGH-DHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQLNYRIAEKS 164 (537)
Q Consensus 87 ~~~dv~~~v~~a~~~~~~~~~~ggGh-~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g 164 (537)
.++||+++|++|+++++|+++||||| ++.|.+. . +++|||++||+| ++|+++.+|+|+||+++.||.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~--~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL--A--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC--C--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 5666532 2 579999999998 9999999999999999999999999999
Q ss_pred CCceeeccC-CCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeeec------cCCCCchhhhhhhccCCce
Q 009342 165 QNLLAFPVG-TCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNR------ESMGEDLFWAIRGGGGASF 237 (537)
Q Consensus 165 ~~gl~~~~g-~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~~------~~~~~dLf~a~rGgg~g~~ 237 (537)
+. +++.++ .++..+|||++.+|++|+.+.+||..+|+|++++||++||++++. +..++||||+++|+. |+|
T Consensus 79 ~~-lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtL 156 (352)
T PRK11282 79 QM-LPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTL 156 (352)
T ss_pred Ce-eCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chh
Confidence 76 555343 445688999999999999999999999999999999999999962 224689999999998 899
Q ss_pred EEEEEEEEEEEecCCeEEEEEEec
Q 009342 238 GIIVSWKINLVAVPSTVTVFAVPR 261 (537)
Q Consensus 238 GiVt~~~~~~~p~~~~~~~~~~~~ 261 (537)
||||++|||++|.|+....+.+.+
T Consensus 157 GVitevtlkl~P~p~~~~t~~~~~ 180 (352)
T PRK11282 157 GVLLEVSLKVLPRPRAELTLRLEM 180 (352)
T ss_pred hhheEEEEEEEecCceEEEEEEec
Confidence 999999999999998654444443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=2.9e-28 Score=262.10 Aligned_cols=198 Identities=17% Similarity=0.227 Sum_probs=167.4
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEc
Q 009342 70 IFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVE 148 (537)
Q Consensus 70 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~ 148 (537)
+|+......|.+++.|+|++||+++|++|++++++|+++|+|||+.+..... +.+|||++|++| ++|.++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 4999999999999999999999999999999999999999999998876654 346899999997 999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee-ccCCCCchhh
Q 009342 149 SGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFW 227 (537)
Q Consensus 149 ~G~~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf~ 227 (537)
||+++.+|.+.|.++|+. |.. .|.....+|||.+++|+||... .+|..+|+|++++||+++|++++ +..+++||||
T Consensus 165 AG~~l~~L~~~L~~~GLa-l~n-~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHGLT-LQN-YASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcCCE-ecc-CCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 999999999999999965 332 3555678899999999999854 68999999999999999999997 6677899999
Q ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEeccchhHHHHHHHHHHHHHH
Q 009342 228 AIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIAD 279 (537)
Q Consensus 228 a~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (537)
|.|+|. |.|||||++|||++|...... -....+ ..++++.+.++..
T Consensus 242 aar~gl-G~lGVIteVTLql~P~~~L~~-~~~~~~----~~~~~~~~~~~~~ 287 (573)
T PLN02465 242 LARCGL-GGLGVVAEVTLQCVPAHRLVE-HTFVSN----RKEIKKNHKKWLS 287 (573)
T ss_pred HhhccC-CCCcEEEEEEEEEEecCceEE-EEEEec----HHHHHHHHHHHHH
Confidence 999998 899999999999999987432 112222 2345555665543
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=6.3e-27 Score=211.09 Aligned_cols=136 Identities=35% Similarity=0.544 Sum_probs=125.0
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCccc-EEEeCCCCeEEEcCCCCHHHHH
Q 009342 79 PLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSE-ISVDVEDKTAWVESGATVGQLN 157 (537)
Q Consensus 79 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~-i~~d~~~~~v~v~~G~~~~~l~ 157 (537)
|.+|++|+|++||+++|++|+++++++.++|+||++.+.+... ++++|||++|++ +++|+++++++|++|+++.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 7899999999999999999999999999999999999776634 499999999999 5999999999999999999999
Q ss_pred HHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee
Q 009342 158 YRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN 217 (537)
Q Consensus 158 ~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~ 217 (537)
++|.++|+. +.+.++.+..+++||++.+|++|..++.||+.+|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~-~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLM-LPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEE-ESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred ccccccccc-ccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 999999865 34447888889999999999999999999999999999999999999986
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=2.2e-24 Score=218.47 Aligned_cols=162 Identities=22% Similarity=0.240 Sum_probs=136.9
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecC-cccEEEeCCCCeEEEcCCCCHHH
Q 009342 77 PKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLIN-FSEISVDVEDKTAWVESGATVGQ 155 (537)
Q Consensus 77 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~-l~~i~~d~~~~~v~v~~G~~~~~ 155 (537)
..|.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.+ |++|||++ |+.|++ ++.+++||||+.+.+
T Consensus 29 g~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~~ 104 (298)
T PRK13905 29 GPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPLIK 104 (298)
T ss_pred ceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcHHH
Confidence 4789999999999999999999999999999999999765443333 89999998 999855 457899999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccC-chhhheeeEEEEcccCeeeeccCCCCchhhhhhhccC
Q 009342 156 LNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYG-AAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGG 234 (537)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G-~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~ 234 (537)
|.+++.++|+.|+.+..|.++||| |+++++++.|| .++|+|+++++|++||++++.. +.|++|++|++.+
T Consensus 105 L~~~l~~~Gl~gle~~~gipGTVG-------Gai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~~ 175 (298)
T PRK13905 105 LARFAAEAGLSGLEFAAGIPGTVG-------GAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSAL 175 (298)
T ss_pred HHHHHHHcCCCcchhccCCCcchh-------HHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccccC
Confidence 999999999887888888888764 33333444455 7999999999999999999732 3599999999875
Q ss_pred C-ceEEEEEEEEEEEecC
Q 009342 235 A-SFGIIVSWKINLVAVP 251 (537)
Q Consensus 235 g-~~GiVt~~~~~~~p~~ 251 (537)
+ .+||||+++||++|..
T Consensus 176 ~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 176 QEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCEEEEEEEEEEcCCC
Confidence 4 3899999999999874
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.89 E-value=2.1e-22 Score=212.01 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=158.7
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCC----CeEEEEecCcccE-EEeCCCCeEEEcCC
Q 009342 76 NPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDV----PFIIIDLINFSEI-SVDVEDKTAWVESG 150 (537)
Q Consensus 76 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~----~gividl~~l~~i-~~d~~~~~v~v~~G 150 (537)
...|.+||.|.|++||+++|++|.++++||++||||+++.|.+.+.++ ++|||||++||+| ++| ++..++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988876532 3899999999998 788 5678999999
Q ss_pred CCHHHHHHHHHHhcCCceeeccCCC-CcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCee-------ee--c--
Q 009342 151 ATVGQLNYRIAEKSQNLLAFPVGTC-PSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRF-------LN--R-- 218 (537)
Q Consensus 151 ~~~~~l~~~l~~~g~~gl~~~~g~~-~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~-------~~--~-- 218 (537)
+++.+|.++|.++|+. .....|++ -..+|||.+..++-|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~-p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~ 192 (564)
T PRK11183 115 TTLYQLEKALKPLGRE-PHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETP 192 (564)
T ss_pred CcHHHHHHHHHHhCCC-CCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCH
Confidence 9999999999999964 22112232 234688999999999999999999999999 999999999 32 1
Q ss_pred -------cCCCC----------------------------------chhhhh--hhccCCceEEEEEEEEEEEecCCeEE
Q 009342 219 -------ESMGE----------------------------------DLFWAI--RGGGGASFGIIVSWKINLVAVPSTVT 255 (537)
Q Consensus 219 -------~~~~~----------------------------------dLf~a~--rGgg~g~~GiVt~~~~~~~p~~~~~~ 255 (537)
+..+. |+...+ .|+. |++||| +++++++|.|+...
T Consensus 193 e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~ 270 (564)
T PRK11183 193 EEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQ 270 (564)
T ss_pred HHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcce
Confidence 11122 777777 8888 899999 99999999999888
Q ss_pred EEEEeccchhHHHHHHHHH
Q 009342 256 VFAVPRTLEQNATKLLNKW 274 (537)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~ 274 (537)
.|-+.++..+.+.++.+..
T Consensus 271 vf~ig~n~~~~~~~~rr~i 289 (564)
T PRK11183 271 VFYIGTNDPAVLTEIRRHI 289 (564)
T ss_pred EEEEeCCCHHHHHHHHHHH
Confidence 8888777655555554443
No 16
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=1.6e-21 Score=200.29 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=144.6
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHHH
Q 009342 76 NPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQ 155 (537)
Q Consensus 76 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~~ 155 (537)
...+.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ |+||+++ +++++++.++.+++||+|+.|.+
T Consensus 30 Gg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~ 106 (363)
T PRK13903 30 GGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWDD 106 (363)
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHHH
Confidence 34788999999999999999999999999999999999875544443 8999998 58888876667999999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEccc-CeeeeccCCCCchhhhhhhccC
Q 009342 156 LNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVK-GRFLNRESMGEDLFWAIRGGGG 234 (537)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~-G~~~~~~~~~~dLf~a~rGgg~ 234 (537)
|.+++.++|+.||.+..|.++|||.+.++.+|++|. .+.|.|.++++++.+ |++++.. +.|++|+||++..
T Consensus 107 l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG~------ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~f 178 (363)
T PRK13903 107 VVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYGQ------EVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSVL 178 (363)
T ss_pred HHHHHHHcCCccccccCCCCcchhhHhhcCCChhHH------HHhhhEeEEEEEECCCCEEEEEE--HHHcceecccccc
Confidence 999999999999999999999999999998888875 578999999999965 9999733 4699999999732
Q ss_pred --CceEEEEEEEEEEEecC
Q 009342 235 --ASFGIIVSWKINLVAVP 251 (537)
Q Consensus 235 --g~~GiVt~~~~~~~p~~ 251 (537)
++++|||+++||++|..
T Consensus 179 ~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 179 KHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred CCCCCEEEEEEEEEEEcCC
Confidence 35889999999999864
No 17
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=1.2e-21 Score=198.40 Aligned_cols=162 Identities=20% Similarity=0.219 Sum_probs=136.5
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHHH
Q 009342 76 NPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQ 155 (537)
Q Consensus 76 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~~ 155 (537)
...|.+++.|.|++||++++++|+++++|+.++|||||+...+.+.+ |++|+|++|++|+++ +.+++||||+.+.+
T Consensus 34 gg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~ 109 (305)
T PRK12436 34 GGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAIID 109 (305)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHHH
Confidence 34699999999999999999999999999999999999875443333 899999889999876 46899999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccC-chhhheeeEEEEcccCeeeeccCCCCchhhhhhhccC
Q 009342 156 LNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYG-AAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGG 234 (537)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G-~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~ 234 (537)
|.+++.++|+.||.++.|.+++||.+..+..|+ || ...|.+.+++|+++||++++.. +.|+.|+||.+..
T Consensus 110 L~~~~~~~gl~Gle~~~giPGtVGGav~~NAGa-------yG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s~~ 180 (305)
T PRK12436 110 VSRIALDHNLTGLEFACGIPGSVGGALYMNAGA-------YGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKSVF 180 (305)
T ss_pred HHHHHHHcCCccchhhcCCccchhHHHHhcCcc-------chhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCCcC
Confidence 999999999988999999999886444444444 55 5678888999999999999733 3589999999854
Q ss_pred C-ceEEEEEEEEEEEec
Q 009342 235 A-SFGIIVSWKINLVAV 250 (537)
Q Consensus 235 g-~~GiVt~~~~~~~p~ 250 (537)
. +..||++++||+.+.
T Consensus 181 ~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 181 ANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCEEEEEEEEEEcCC
Confidence 3 357999999999875
No 18
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.85 E-value=6.1e-21 Score=193.02 Aligned_cols=182 Identities=23% Similarity=0.282 Sum_probs=158.0
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcC
Q 009342 71 FSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVES 149 (537)
Q Consensus 71 ~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~ 149 (537)
|..+..++.+-|-+|+|++|+.++|+.|++++.++++.|.|||..+..+.+ |.+|+|..||++ ++|++..++||++
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEecc
Confidence 555555677889999999999999999999999999999999999887755 588999999996 9999999999999
Q ss_pred CCCHHHHHHHHHHhcCCceeec-cCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee-ccCCCCchhh
Q 009342 150 GATVGQLNYRIAEKSQNLLAFP-VGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFW 227 (537)
Q Consensus 150 G~~~~~l~~~l~~~g~~gl~~~-~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf~ 227 (537)
|+++.||++++.+.|+. ++ .++...+.|||+|..|.||.....|+.......-..++.++|.++. ++..+||+|-
T Consensus 119 GirlrQLie~~~~~Gls---L~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~ 195 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLGLS---LPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFN 195 (518)
T ss_pred CcCHHHHHHHHHhcCcc---ccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHh
Confidence 99999999999999865 54 3666778899999999999877767777666677777778998776 7788999999
Q ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEE
Q 009342 228 AIRGGGGASFGIIVSWKINLVAVPSTVTVFAV 259 (537)
Q Consensus 228 a~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~ 259 (537)
|.+-+. |-+|||.++||++.|.-+....+.+
T Consensus 196 AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 196 AAKVSL-GVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred hhhhcc-cceeEEEEEEEEEEecceeeeEEEE
Confidence 999999 7999999999999999876555544
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.85 E-value=3.9e-21 Score=193.04 Aligned_cols=162 Identities=18% Similarity=0.176 Sum_probs=138.6
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHHH
Q 009342 76 NPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQ 155 (537)
Q Consensus 76 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~~ 155 (537)
...|.+++.|+|++||++++++|+++++|+.++|||||....+.+.+ +++|++++|+.+.+++ +.+++||||+.|.+
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~ 86 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWHK 86 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHHH
Confidence 34789999999999999999999999999999999999887765554 8999999998887766 57999999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhh-heeeEEEEcccCeeeeccCCCCchhhhhhhccC
Q 009342 156 LNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAAD-HIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGG 234 (537)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d-~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~ 234 (537)
|.+++.++|+.|+.+..|.++|+ ||+.+++++.||..++ .|++++||++||++++.. +.|+.|++|.+..
T Consensus 87 l~~~~~~~Gl~GlE~l~giPGtv-------GGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f 157 (284)
T TIGR00179 87 LVKYALKNGLSGLEFLAGIPGTV-------GGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHCCCcccccCCCCCchH-------HHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCcccc
Confidence 99999999998888877777654 7777788888999886 679999999999999733 3599999998764
Q ss_pred Cc-e-EEEEEEEEEEEe
Q 009342 235 AS-F-GIIVSWKINLVA 249 (537)
Q Consensus 235 g~-~-GiVt~~~~~~~p 249 (537)
.. . .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 32 2 699999999844
No 20
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=5.7e-21 Score=192.96 Aligned_cols=162 Identities=16% Similarity=0.188 Sum_probs=132.1
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecC-cccEEEeCCCCeEEEcCCCCHH
Q 009342 76 NPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLIN-FSEISVDVEDKTAWVESGATVG 154 (537)
Q Consensus 76 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~-l~~i~~d~~~~~v~v~~G~~~~ 154 (537)
...|.+++.|+|++||++++++|+++++|+.++|||||......+.+ |++|++++ ++.++++ +.+++||||+.+.
T Consensus 33 gg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~~ 108 (302)
T PRK14652 33 GGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPIS 108 (302)
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcHH
Confidence 44789999999999999999999999999999999999864333333 89999976 5666544 4699999999999
Q ss_pred HHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCccc-ccCchhhheeeEEEEcccCeeeeccCCCCchhhhhhhcc
Q 009342 155 QLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLR-KYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGG 233 (537)
Q Consensus 155 ~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~-~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg 233 (537)
+|.+++.++|+.|+.+..|.++|| ||+..++++ .+|.+.|+|+++++|+++| +++.. ..|+.|++|++.
T Consensus 109 ~L~~~~~~~GL~GlE~l~gIPGTv-------GGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~ 178 (302)
T PRK14652 109 RLPARAHAHGLVGMEFLAGIPGTL-------GGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHcCCcccccccCCCcch-------hHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceec
Confidence 999999999998888777777655 445555554 6778999999999999999 44322 369999999975
Q ss_pred CCceEEEEEEEEEEEecC
Q 009342 234 GASFGIIVSWKINLVAVP 251 (537)
Q Consensus 234 ~g~~GiVt~~~~~~~p~~ 251 (537)
.+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 433489999999999854
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=7.5e-21 Score=192.55 Aligned_cols=162 Identities=22% Similarity=0.240 Sum_probs=136.6
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHHHH
Q 009342 77 PKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQL 156 (537)
Q Consensus 77 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~~l 156 (537)
..+.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.+ |++|++++|++|+++. .+++||||+.+.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 4688999999999999999999999999999999999875444443 8999998899998763 58999999999999
Q ss_pred HHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeeeccCCCCchhhhhhhccCCc
Q 009342 157 NYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGAS 236 (537)
Q Consensus 157 ~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~g~ 236 (537)
.+++.++|+.|+.+..|.+++||.+..+..|++| |.++|+|++++||+++|++++.. ..|+.|+||.+....
T Consensus 111 ~~~~~~~Gl~GlE~~~gIPGtVGGav~mNaGayG------g~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~~~ 182 (307)
T PRK13906 111 SRVARDYALTGLEFACGIPGSIGGAVYMNAGAYG------GEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSIIQK 182 (307)
T ss_pred HHHHHHcCCccchhhcCCCccHhHHHHhhCCcch------hhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccCCC
Confidence 9999999998888888888877555555555544 58899999999999999999733 358999999876432
Q ss_pred -eEEEEEEEEEEEec
Q 009342 237 -FGIIVSWKINLVAV 250 (537)
Q Consensus 237 -~GiVt~~~~~~~p~ 250 (537)
--||++++|++.|.
T Consensus 183 ~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 183 EHLVVLEAAFTLAPG 197 (307)
T ss_pred CCEEEEEEEEEECCC
Confidence 24999999999863
No 22
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.82 E-value=3.4e-20 Score=183.21 Aligned_cols=187 Identities=20% Similarity=0.267 Sum_probs=167.8
Q ss_pred ccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCe
Q 009342 66 IQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKT 144 (537)
Q Consensus 66 ~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~ 144 (537)
.+|..|..........|+.|.|+++|++++++|+++++.|++.||-++.-|.|.+.- +-|||+|.+||+| ++|+-.++
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGi 155 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGI 155 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccce
Confidence 456778887778889999999999999999999999999999999999888787654 3799999999998 99999999
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee------c
Q 009342 145 AWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN------R 218 (537)
Q Consensus 145 v~v~~G~~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~------~ 218 (537)
+++++||.+.++..+|+++|+. +++--|.-+++-|||.++..+-|..--+||...-+|+++|+|+|+|+++. .
T Consensus 156 l~cdaG~ILen~d~~l~e~g~m-~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRK 234 (511)
T KOG1232|consen 156 LKCDAGVILENADNFLAEKGYM-FPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRK 234 (511)
T ss_pred EEeccceEehhhHHHHHhcCce-eeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcc
Confidence 9999999999999999999987 66667778888899999999999988999999999999999999999994 3
Q ss_pred cCCCCchhhhhhhccCCceEEEEEEEEEEEecCCeEE
Q 009342 219 ESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVT 255 (537)
Q Consensus 219 ~~~~~dLf~a~rGgg~g~~GiVt~~~~~~~p~~~~~~ 255 (537)
+....|+-..+.|+. |++||||++++-+.|.|..+.
T Consensus 235 DNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn 270 (511)
T KOG1232|consen 235 DNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVN 270 (511)
T ss_pred cCccccchhheecCC-ceeeEEeeEEEeecCCCccee
Confidence 445679999999999 899999999999999998553
No 23
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=8.2e-19 Score=176.91 Aligned_cols=165 Identities=17% Similarity=0.198 Sum_probs=139.9
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcc-cEEEeCCCCeEEEcCCCCHHH
Q 009342 77 PKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFS-EISVDVEDKTAWVESGATVGQ 155 (537)
Q Consensus 77 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~-~i~~d~~~~~v~v~~G~~~~~ 155 (537)
....+++.|+|++|+++++++|+++++|+.++|+|||+...+.+.+ |+||+++.++ ++..+.+..+++|+||+.|.+
T Consensus 19 g~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~~ 96 (295)
T PRK14649 19 GPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPMAG 96 (295)
T ss_pred ceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcHHH
Confidence 3677899999999999999999999999999999999988776665 8999998754 666665545899999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeeeccCCCCchhhhhhhccCC
Q 009342 156 LNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGA 235 (537)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~g 235 (537)
|..++.++|+.||....|.++|||.++++..|++| +.++|.|.++++++.+|++++.. +.||+|++|.+..-
T Consensus 97 l~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGayg------~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~~~ 168 (295)
T PRK14649 97 TARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGCYG------GDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSVLK 168 (295)
T ss_pred HHHHHHHcCCccccccCCCCcchhHHHHhhccccc------eEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceeecc
Confidence 99999999999999999999988777777777666 46889999999999999998732 24999999988543
Q ss_pred ce---------EEEEEEEEEEEecC
Q 009342 236 SF---------GIIVSWKINLVAVP 251 (537)
Q Consensus 236 ~~---------GiVt~~~~~~~p~~ 251 (537)
.. -||++++|++.|..
T Consensus 169 ~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 169 QLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred cccccccccCCeEEEEEEEEECCCC
Confidence 21 29999999997753
No 24
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.77 E-value=5.9e-18 Score=167.59 Aligned_cols=191 Identities=21% Similarity=0.254 Sum_probs=159.4
Q ss_pred CCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCC-CCccCCC--CeEEEEecCcccE-EEeCCCCeEEE
Q 009342 72 STPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEG-LSSISDV--PFIIIDLINFSEI-SVDVEDKTAWV 147 (537)
Q Consensus 72 ~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g-~~~~~~~--~gividl~~l~~i-~~d~~~~~v~v 147 (537)
......-|..||-|+..+||.++|+.|.+||+-+.+.|||+|..+ ..++.+. .-+.+|++.||+| -+|.++-++++
T Consensus 154 egkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~ 233 (613)
T KOG1233|consen 154 EGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRA 233 (613)
T ss_pred cCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEE
Confidence 334456899999999999999999999999999999999999774 3333322 2455788999998 78999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee-----ccCCC
Q 009342 148 ESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN-----RESMG 222 (537)
Q Consensus 148 ~~G~~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-----~~~~~ 222 (537)
++|+...+|-+.|.+.|+. ...-+.+..-.++|||+..-+.|+--..||.+-|-|+.+++|++.|.+-. .-+..
T Consensus 234 eaGIvGQ~LERqL~~~G~t-~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 234 EAGIVGQSLERQLNKKGFT-CGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred ecCcchHHHHHHHhhcCcc-cCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999854 11223333345789999999999999999999999999999999998873 23458
Q ss_pred CchhhhhhhccCCceEEEEEEEEEEEecCCeEEEEEEeccch
Q 009342 223 EDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE 264 (537)
Q Consensus 223 ~dLf~a~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~~ 264 (537)
||+..-+.|+. |++||||++|+|+.|+|+.....++.|+..
T Consensus 313 PDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPNF 353 (613)
T KOG1233|consen 313 PDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPNF 353 (613)
T ss_pred CCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCcH
Confidence 99999999999 899999999999999998666666666643
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.71 E-value=5.6e-17 Score=163.03 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=133.9
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHHHHH
Q 009342 78 KPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLN 157 (537)
Q Consensus 78 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~~l~ 157 (537)
...+++.|+|++|+++++++|++ ++|+.+.|+|+|....+.+.+ |+||.+++|+.|+++ +..++|+||+.+.+|.
T Consensus 33 ~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~--~~~v~v~AG~~l~~L~ 107 (297)
T PRK14653 33 PVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVD--NDKIICESGLSLKKLC 107 (297)
T ss_pred EEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEe--CCEEEEeCCCcHHHHH
Confidence 56789999999999999999999 999999999999988776665 899999779999886 3589999999999999
Q ss_pred HHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCc-hhhheeeEEEEcccCeeeeccCCCCchhhhhhhccCCc
Q 009342 158 YRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGA-AADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGAS 236 (537)
Q Consensus 158 ~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~-~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~g~ 236 (537)
.++.++|+.||.+..|.++|||. +.-++++.||. +.|.|.++++++ +|++++.. ..|+-|.+|.+..+.
T Consensus 108 ~~~~~~GL~GlE~l~gIPGTVGG-------Av~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~~~ 177 (297)
T PRK14653 108 LVAAKNGLSGFENAYGIPGSVGG-------AVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIFKE 177 (297)
T ss_pred HHHHHCCCcchhhhcCCchhHHH-------HHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccCCC
Confidence 99999999999999999888743 33344445676 789999999999 78877632 349999999875432
Q ss_pred --eEEEEEEEEEEEecC
Q 009342 237 --FGIIVSWKINLVAVP 251 (537)
Q Consensus 237 --~GiVt~~~~~~~p~~ 251 (537)
--|||+++||+.|..
T Consensus 178 ~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 178 EKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCcEEEEEEEEEEecCC
Confidence 129999999998753
No 26
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.67 E-value=2.7e-17 Score=118.72 Aligned_cols=47 Identities=45% Similarity=0.824 Sum_probs=34.4
Q ss_pred eeccccCCccCCCCCCCCcchhhhhhhhhhhhcccHHHHHHhHhhcCCCCCCcCCCCCC
Q 009342 470 AYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIP 528 (537)
Q Consensus 470 aYvNy~d~~l~~~ep~~~~~~~~~~~~~~~YyG~ny~RL~~IK~kYDP~nvF~~~qsI~ 528 (537)
+|+||+|.+++ ...|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~------------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP------------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG------------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc------------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999998754 126999999999999999999999999999999997
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=8.1e-16 Score=151.76 Aligned_cols=165 Identities=21% Similarity=0.232 Sum_probs=143.0
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHHH
Q 009342 76 NPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQ 155 (537)
Q Consensus 76 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~~ 155 (537)
......++.|++.+|+.++++++.+.++|+.+.|+|+|..-.+.+.+ +++|.+..++.++++.+...+++++|+.|.+
T Consensus 18 Gg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~~ 95 (291)
T COG0812 18 GGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPWHD 95 (291)
T ss_pred CcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcHHH
Confidence 44678999999999999999999999999999999999876665554 8999999999988887777999999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeeeccCCCCchhhhhhhccCC
Q 009342 156 LNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGA 235 (537)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~g 235 (537)
|.+++.++|+.||.+..|.++|||-+-++..|++|. -+.|.+.++++++.+|++.+-. +.||-|+||-+...
T Consensus 96 l~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGAyG~------Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S~f~ 167 (291)
T COG0812 96 LVRFALENGLSGLEFLAGIPGSVGGAVIMNAGAYGV------EISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTSPFK 167 (291)
T ss_pred HHHHHHHcCCcchhhhcCCCcccchhhhccCccccc------chheeEEEEEEEcCCCCEEEEE--HHHhCcccccCcCC
Confidence 999999999999999999999996655555555553 2679999999999999999732 35999999988764
Q ss_pred ce-EEEEEEEEEEEec
Q 009342 236 SF-GIIVSWKINLVAV 250 (537)
Q Consensus 236 ~~-GiVt~~~~~~~p~ 250 (537)
.- .||++++|++.|-
T Consensus 168 ~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 168 KEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCEEEEEEEEEeCCC
Confidence 44 8999999999876
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=1.2e-15 Score=153.01 Aligned_cols=162 Identities=16% Similarity=0.159 Sum_probs=137.1
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCcc-CCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHHHH
Q 009342 78 KPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSI-SDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQL 156 (537)
Q Consensus 78 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~-~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~~l 156 (537)
...+++.|+|.+|+++++++++++++|+.+.|+|+|....+.+ .+ |+||.+.+|+.++++. ..++|+||+.|.+|
T Consensus 32 ~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~l 107 (302)
T PRK14650 32 ISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNFEDL 107 (302)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcHHHH
Confidence 5678899999999999999999999999999999998876655 44 8999986799998863 47999999999999
Q ss_pred HHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeeeccCCCCchhhhhhhccCCc
Q 009342 157 NYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGAS 236 (537)
Q Consensus 157 ~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~g~ 236 (537)
..++.++|+.||++..|.++|||.+=++..|++|. -+.|.|.++++++.+|++++.. ..|+.|+||.+....
T Consensus 108 ~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGayG~------ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~f~~ 179 (302)
T PRK14650 108 CKFALQNELSGLEFIYGLPGTLGGAIWMNARCFGN------EISEILDKITFIDEKGKTICKK--FKKEEFKYKISPFQN 179 (302)
T ss_pred HHHHHHcCCchhhhhcCCCcchhHHHHhhCCcccc------chheeEEEEEEEECCCCEEEEE--HHHcCcccccccCCC
Confidence 99999999999999999999996655555555552 3679999999999999998733 359999999876432
Q ss_pred -eEEEEEEEEEEEecC
Q 009342 237 -FGIIVSWKINLVAVP 251 (537)
Q Consensus 237 -~GiVt~~~~~~~p~~ 251 (537)
-.||++++|++.|..
T Consensus 180 ~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 180 KNTFILKATLNLKKGN 195 (302)
T ss_pred CCEEEEEEEEEEcCCC
Confidence 249999999998754
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=1.4e-15 Score=154.63 Aligned_cols=161 Identities=16% Similarity=0.086 Sum_probs=135.3
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEe-CCC--CeEEEcCCCCHH
Q 009342 78 KPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVD-VED--KTAWVESGATVG 154 (537)
Q Consensus 78 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d-~~~--~~v~v~~G~~~~ 154 (537)
...+++.|+|++|+++++++|+++++|+.+.|+|+|....+ +.. |+||.++ |++++++ .++ ..++++||+.|.
T Consensus 20 ~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~~-~~~~~~~~~~~~~~~v~a~AG~~~~ 95 (334)
T PRK00046 20 RARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLNR-IKGIEVLSEDDDAWYLHVGAGENWH 95 (334)
T ss_pred EEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEec-CCceEEEecCCCeEEEEEEcCCcHH
Confidence 66789999999999999999999999999999999988766 454 8999984 9999873 222 279999999999
Q ss_pred HHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEccc-CeeeeccCCCCchhhhhhhcc
Q 009342 155 QLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVK-GRFLNRESMGEDLFWAIRGGG 233 (537)
Q Consensus 155 ~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~-G~~~~~~~~~~dLf~a~rGgg 233 (537)
+|.+++.++|+.||....|.++|||.+=++..|++|. -..|.|.++++++.+ |++++.. +.|+.|++|-+.
T Consensus 96 ~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG~------ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR~S~ 167 (334)
T PRK00046 96 DLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGAYGV------ELKDVCDYVEALDLATGEFVRLS--AAECRFGYRDSI 167 (334)
T ss_pred HHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCcCcc------cHheeEEEEEEEECCCCcEEEEE--HHHcCccccccc
Confidence 9999999999999999999999997666666666552 367999999999987 9988732 369999999886
Q ss_pred CCc----eEEEEEEEEEEEec
Q 009342 234 GAS----FGIIVSWKINLVAV 250 (537)
Q Consensus 234 ~g~----~GiVt~~~~~~~p~ 250 (537)
... --||++++|++.|-
T Consensus 168 f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 168 FKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred CCCCCcCCEEEEEEEEEecCC
Confidence 432 23999999999885
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=9.4e-15 Score=148.44 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=133.6
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEe---CCCCeEEEcCCCCH
Q 009342 77 PKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVD---VEDKTAWVESGATV 153 (537)
Q Consensus 77 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d---~~~~~v~v~~G~~~ 153 (537)
....+++.|+|.+|+++++++++++++|+.+.|+|+|....+.+.+ |+||.+++|+++++. .+...++|++|+.|
T Consensus 28 G~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~ 105 (354)
T PRK14648 28 GAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPV 105 (354)
T ss_pred cEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCCcH
Confidence 3667899999999999999999999999999999999887666555 899999779988752 22247999999999
Q ss_pred HHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEE--------------------cccC
Q 009342 154 GQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMI--------------------DVKG 213 (537)
Q Consensus 154 ~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV--------------------~a~G 213 (537)
.+|..++.++|+.||+...|.++|||.+=++..|++|. -+.|.|.+++++ +.+|
T Consensus 106 ~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mNAGAyG~------ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~g 179 (354)
T PRK14648 106 AALLAFCAHHALRGLETFAGLPGSVGGAAYMNARCYGR------AIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKRG 179 (354)
T ss_pred HHHHHHHHHcCCcchhhhcCCCcchhhHhhhcCCccce------EhhheEEEEEEEeccCcccccccccccccccccCCC
Confidence 99999999999999999999999996554555444442 366999999999 5667
Q ss_pred ee-------------eeccCCCCchhhhhhhccCCc---------eEEEEEEEEEEEecC
Q 009342 214 RF-------------LNRESMGEDLFWAIRGGGGAS---------FGIIVSWKINLVAVP 251 (537)
Q Consensus 214 ~~-------------~~~~~~~~dLf~a~rGgg~g~---------~GiVt~~~~~~~p~~ 251 (537)
++ .+ -.+.|+.|+||-+.... --||++++|++.|..
T Consensus 180 ~~~~~~~~~~~~~~~~~--~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 180 ECLGLDGGPFTCSSFQT--VFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ceecccccccccccceE--ecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 76 22 12469999999887532 239999999998754
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.45 E-value=7.1e-14 Score=139.17 Aligned_cols=124 Identities=25% Similarity=0.359 Sum_probs=109.4
Q ss_pred EEecCcccE-EEeCCCCeEEEcCCCCHHHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeE
Q 009342 128 IDLINFSEI-SVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDA 206 (537)
Q Consensus 128 idl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~ 206 (537)
|++..|.+| ++|.++.+|+|+|+++++++.++|-+.|+. |++.+ .-...++||++.|=|+-..|++||+..+.+.+.
T Consensus 106 v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~t-LaV~~-EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 106 VPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYT-LAVLP-ELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred CCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCce-eeeec-ccccceecceeeecccccccchhhhHHhhhhee
Confidence 455545555 889999999999999999999999999987 65543 445678999999999999999999999999999
Q ss_pred EEEcccCeeee--ccCCCCchhhhhhhccCCceEEEEEEEEEEEecCCeE
Q 009342 207 HMIDVKGRFLN--RESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTV 254 (537)
Q Consensus 207 ~vV~a~G~~~~--~~~~~~dLf~a~rGgg~g~~GiVt~~~~~~~p~~~~~ 254 (537)
|||+|||++++ .+++++|||+|+-.+. |++|..+.+|+|+.|..+.+
T Consensus 184 EvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 184 EVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred EEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceE
Confidence 99999999996 5558999999999999 89999999999999988754
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.43 E-value=9.5e-13 Score=130.32 Aligned_cols=150 Identities=20% Similarity=0.194 Sum_probs=121.4
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecC-cccEEEeCCCCeEEEcCCCCHHHH
Q 009342 78 KPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLIN-FSEISVDVEDKTAWVESGATVGQL 156 (537)
Q Consensus 78 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~-l~~i~~d~~~~~v~v~~G~~~~~l 156 (537)
...+++ |.+++|+++++ ++|+.+.|+|+|....+.+.+ |+||.+++ ++.++++. ++++|+.|.+|
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l 85 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLPGL 85 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHHHH
Confidence 344566 99999999988 599999999999887666555 89999866 66665542 69999999999
Q ss_pred HHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeeeccCCCCchhhhhhhccCCc
Q 009342 157 NYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGAS 236 (537)
Q Consensus 157 ~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~g~ 236 (537)
.+++.++|+.||.+..|.++|||.+=++..|++|. -+.|.|.++++++ +|++++.. +.|+.|++|.+....
T Consensus 86 ~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG~------ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~~~~ 156 (273)
T PRK14651 86 VRRAARLGLSGLEGLVGIPAQVGGAVKMNAGTRFG------EMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSGLPP 156 (273)
T ss_pred HHHHHHCCCcchhhhcCCCcchhhHHHhhCCcccc------ChheeEEEEEEEE-CCCEEEEE--HHHccccccccCCCC
Confidence 99999999999999999999996555555555542 3679999999997 89988733 369999999886433
Q ss_pred eEEEEEEEEEEEec
Q 009342 237 FGIIVSWKINLVAV 250 (537)
Q Consensus 237 ~GiVt~~~~~~~p~ 250 (537)
--||++++|++.|.
T Consensus 157 ~~iIl~a~f~l~~~ 170 (273)
T PRK14651 157 GHVVTRVRLKLRPS 170 (273)
T ss_pred CEEEEEEEEEECCC
Confidence 24999999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.11 E-value=2.9e-10 Score=111.61 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=113.5
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHHHHH
Q 009342 78 KPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLN 157 (537)
Q Consensus 78 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~~l~ 157 (537)
...+++.|.+.+ + ++|+.+.|+|+|....+.+.+ +++ -+++|+.++++. ..+++++|+.+.+|.
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~l~ 81 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSGKIF 81 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHHHHH
Confidence 455677787777 5 899999999999886665532 444 345688888854 479999999999999
Q ss_pred HHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeeeccCCCCchhhhhhhccCCce
Q 009342 158 YRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASF 237 (537)
Q Consensus 158 ~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~g~~ 237 (537)
+++.++|+.||.+..|.++|||-+=++..|.+|. -+.|.|.++++++ |+ + ...|+.|++|-+...
T Consensus 82 ~~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa~g~------ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~~-- 146 (257)
T PRK13904 82 NYAKKNNLGGFEFLGKLPGTLGGLVKMNAGLKEY------EISNNLESICTNG--GW-I----EKEDIGFGYRSSGIN-- 146 (257)
T ss_pred HHHHHCCCchhhhhcCCCccHHHHHHhcCCcCcc------chheeEEEEEEEe--eE-E----eHHHCcccccCcCCC--
Confidence 9999999999999999999997666666666553 3669999999998 42 2 246999999987632
Q ss_pred EEEEEEEEEEEecC
Q 009342 238 GIIVSWKINLVAVP 251 (537)
Q Consensus 238 GiVt~~~~~~~p~~ 251 (537)
.||++++||+.|..
T Consensus 147 ~iIl~a~f~l~~~~ 160 (257)
T PRK13904 147 GVILEARFKKTHGF 160 (257)
T ss_pred cEEEEEEEEECCCC
Confidence 59999999998854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=94.18 E-value=0.082 Score=49.24 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=50.1
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCC-ccCCCCeEEEEecCcc---cEEEeCCCCeEEEcCCCCHH
Q 009342 79 PLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLS-SISDVPFIIIDLINFS---EISVDVEDKTAWVESGATVG 154 (537)
Q Consensus 79 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~gividl~~l~---~i~~d~~~~~v~v~~G~~~~ 154 (537)
+..++.|+|.+|..++++ .+-...+.+||++....- ........+||++++. .|+.+ ++.+++|+++++.
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~--~~~l~IGA~vtl~ 75 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISED--DGGLRIGAAVTLS 75 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEE--TSEEEEETTSBHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEe--ccEEEECCCccHH
Confidence 456789999999999998 223568889999843111 1100125889998764 45554 6799999999999
Q ss_pred HHHHH
Q 009342 155 QLNYR 159 (537)
Q Consensus 155 ~l~~~ 159 (537)
++.+.
T Consensus 76 ~l~~~ 80 (171)
T PF00941_consen 76 ELEES 80 (171)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 99875
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=93.99 E-value=0.17 Score=50.44 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=82.0
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHHHHH
Q 009342 81 FIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQLNYR 159 (537)
Q Consensus 81 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~ 159 (537)
-+..|+|.+|..++++ +++-...+.+||++..... ......++||++++ +. .+..+++.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 3678999999988765 3433357889999974211 11123688999975 43 34445679999999999999763
Q ss_pred H------HHhcCCceeec-cCCCCcccchhhhcCCCCCCcccccCchhhh-----eeeEEEEcccCeeeeccCCCCchhh
Q 009342 160 I------AEKSQNLLAFP-VGTCPSVGVGGHFSGGGYGALLRKYGAAADH-----IVDAHMIDVKGRFLNRESMGEDLFW 227 (537)
Q Consensus 160 l------~~~g~~gl~~~-~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~-----v~~~~vV~a~G~~~~~~~~~~dLf~ 227 (537)
. .+.-.. +. +..-...++||.+..+-- ..|. .+..+|+..+++.+.- .|+|
T Consensus 79 ~~~~~~L~~a~~~---vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~- 141 (258)
T PRK09799 79 RFIPAALREALGF---VYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL- 141 (258)
T ss_pred cccHHHHHHHHHH---hCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc-
Confidence 2 111100 10 111234567888774421 1343 2566777777754432 2444
Q ss_pred hhhhccCCceEEEEEEEEE
Q 009342 228 AIRGGGGASFGIIVSWKIN 246 (537)
Q Consensus 228 a~rGgg~g~~GiVt~~~~~ 246 (537)
.|. .-.|||++.+.
T Consensus 142 --~g~---~~Eil~~I~iP 155 (258)
T PRK09799 142 --ACP---CDRLLTEIIIP 155 (258)
T ss_pred --CCC---CCcEEEEEEcC
Confidence 222 22589988765
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=92.54 E-value=0.37 Score=47.98 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=79.1
Q ss_pred EEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHHHHH-
Q 009342 82 IITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQLNYR- 159 (537)
Q Consensus 82 vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~- 159 (537)
+..|+|.+|..++++ +++-.-.+.+||++..-.-... ...++||++++ +. .+..+++.+++|+++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~-~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRT-DKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhccc-CCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 578999999887765 3432356789999974221111 12578999875 43 33445578999999999998752
Q ss_pred -----HHHhcCCceee-ccCCCCcccchhhhcCCCCCCcccccCchhhh-----eeeEEEEcccCeeeeccCCCCchhhh
Q 009342 160 -----IAEKSQNLLAF-PVGTCPSVGVGGHFSGGGYGALLRKYGAAADH-----IVDAHMIDVKGRFLNRESMGEDLFWA 228 (537)
Q Consensus 160 -----l~~~g~~gl~~-~~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~-----v~~~~vV~a~G~~~~~~~~~~dLf~a 228 (537)
|.+.-.. + .+..-...++||.+..+-- ..|. .+..+|++.+++.+.- .|+|-
T Consensus 79 ~~~~~L~~aa~~---va~~qIRN~gTlGGNl~~a~p---------~~D~~~~LlaldA~v~l~~~r~vp~----~dF~~- 141 (257)
T TIGR03312 79 LTPAALKEALGF---VYSRHIRNQATIGGEIAAFQS---------ESLLLPVLLALKATVVLANASQMDI----EDYLA- 141 (257)
T ss_pred chHHHHHHHHHH---hCCHHHhccccHHHHhhcCCC---------chHHHHHHHHcCCEEEEecCcEEeH----HHhcC-
Confidence 2221110 1 1112245568888875421 1232 3556666666544421 24442
Q ss_pred hhhccCCceEEEEEEEEE
Q 009342 229 IRGGGGASFGIIVSWKIN 246 (537)
Q Consensus 229 ~rGgg~g~~GiVt~~~~~ 246 (537)
|.. + -+||++.+.
T Consensus 142 --g~~-~--Ell~~V~iP 154 (257)
T TIGR03312 142 --SEQ-R--ELIVEVIIP 154 (257)
T ss_pred --CCC-C--cEEEEEEcC
Confidence 221 1 488888765
No 37
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=91.55 E-value=0.52 Score=47.20 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=24.5
Q ss_pred hhhhhhhhcccHHHHHHhHhhcCCCCCCcCCCCC
Q 009342 494 SVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSI 527 (537)
Q Consensus 494 ~~~~~~YyG~ny~RL~~IK~kYDP~nvF~~~qsI 527 (537)
+.|. .-||+.++|+++.|++|||.+++.--|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 3684 67899999999999999999999887776
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=90.85 E-value=0.63 Score=50.44 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=84.7
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-CccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHH
Q 009342 79 PLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGL-SSISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQL 156 (537)
Q Consensus 79 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l 156 (537)
..-++.|+|.+|+.++++- +. ...+.+||++..-. .........+||++++.+. .+..+++.++||+++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999888763 32 35778999986321 1111112588999986543 33445578999999999999
Q ss_pred HHHHHHhcC--C-ceeecc--CCCCcccchhhhcCCCCCCcccccCchhhhe-----e--eEEEEcccCeeeeccCCCCc
Q 009342 157 NYRIAEKSQ--N-LLAFPV--GTCPSVGVGGHFSGGGYGALLRKYGAAADHI-----V--DAHMIDVKGRFLNRESMGED 224 (537)
Q Consensus 157 ~~~l~~~g~--~-gl~~~~--g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v-----~--~~~vV~a~G~~~~~~~~~~d 224 (537)
.+.+.++-. . -+...+ ..-...++||.+..+.- ..|.. + .+++...+|+....- .|
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~vpl---~d 335 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTLPL---ED 335 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEEeH---HH
Confidence 875544310 0 000111 12234557788765421 23432 3 344555566433211 25
Q ss_pred hhhhhhhccCCceEEEEEEEEEE
Q 009342 225 LFWAIRGGGGASFGIIVSWKINL 247 (537)
Q Consensus 225 Lf~a~rGgg~g~~GiVt~~~~~~ 247 (537)
+|-..+----..--||+++.+..
T Consensus 336 F~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 336 FFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred hhcccccccCCCCceEEEEEecC
Confidence 55432211101124899888763
No 39
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=88.27 E-value=0.75 Score=46.68 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=50.4
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCC-CCccCCCCeEEEEecCcc---cEEEeCCCCeEEEcCCCCHHHH
Q 009342 81 FIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEG-LSSISDVPFIIIDLINFS---EISVDVEDKTAWVESGATVGQL 156 (537)
Q Consensus 81 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g-~~~~~~~~gividl~~l~---~i~~d~~~~~v~v~~G~~~~~l 156 (537)
-++.|+|.+|..++++- +. ...+.+||++... ..........+||++++. .|+.. +++.+++|+++++.++
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~-~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLA-EDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEec-CCCEEEEEeCCcHHHH
Confidence 57889999999888763 22 3577999998631 111111125789998865 45442 3467999999999998
Q ss_pred HH
Q 009342 157 NY 158 (537)
Q Consensus 157 ~~ 158 (537)
.+
T Consensus 81 ~~ 82 (291)
T PRK09971 81 IE 82 (291)
T ss_pred hc
Confidence 75
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=87.50 E-value=0.95 Score=46.52 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=49.0
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-CccCCCCeEEEEecCc---ccEEEeCCCCeEEEcCCCCHHHH
Q 009342 81 FIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGL-SSISDVPFIIIDLINF---SEISVDVEDKTAWVESGATVGQL 156 (537)
Q Consensus 81 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~~~~~gividl~~l---~~i~~d~~~~~v~v~~G~~~~~l 156 (537)
-++.|+|.+|..++++- ++ .-.+.+||++.... -........+||++++ +.|+. +++.+++|+++++.++
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~--~~~~l~IGA~vT~~~l 79 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLST--LADGLRIGAGVTLAAL 79 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEe--cCCEEEEeccCcHHHH
Confidence 47889999998887663 32 24678999975211 1111112578999875 44554 4578999999999998
Q ss_pred HH
Q 009342 157 NY 158 (537)
Q Consensus 157 ~~ 158 (537)
.+
T Consensus 80 ~~ 81 (321)
T TIGR03195 80 AE 81 (321)
T ss_pred hh
Confidence 54
No 41
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=86.57 E-value=0.91 Score=45.37 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCC-Ccc-CCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHHHH
Q 009342 85 PFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGL-SSI-SDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQLNY 158 (537)
Q Consensus 85 p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~-~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~ 158 (537)
|+|.+|+.++++- +. ...+.+||++..-. ... ......+||++++.+. .++.+++.+++|+++++.++.+
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 6788888887764 22 35778999985321 111 0112578999987654 4455668999999999999863
No 42
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=84.59 E-value=3.7 Score=40.48 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=22.7
Q ss_pred hhhhhhcccHHHHHHhHhhcCCCCCCcCCC
Q 009342 496 WGKKYFKNNFYRLVHVKTMVDPENFFRNEQ 525 (537)
Q Consensus 496 ~~~~YyG~ny~RL~~IK~kYDP~nvF~~~q 525 (537)
....| .++++-++||+++||+|+|.++.
T Consensus 171 l~~lY--Pr~~dFlavR~~lDP~G~F~N~y 198 (257)
T PLN00107 171 AIAKY--KKAGEFLKVKERLDPEGLFSSEW 198 (257)
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCccCCHH
Confidence 33444 58889999999999999998763
No 43
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=81.90 E-value=3.7 Score=39.69 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=20.3
Q ss_pred hhhhhhcc-cHHHHHHhHhhcCCCCCCc
Q 009342 496 WGKKYFKN-NFYRLVHVKTMVDPENFFR 522 (537)
Q Consensus 496 ~~~~YyG~-ny~RL~~IK~kYDP~nvF~ 522 (537)
|-..++|. -+.-+++||+.+||+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 44455665 6999999999999999986
No 44
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=78.69 E-value=1.3 Score=43.86 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=19.3
Q ss_pred hhhhhhhcccHHHHHHhHhhcCCCCCCcCC
Q 009342 495 VWGKKYFKNNFYRLVHVKTMVDPENFFRNE 524 (537)
Q Consensus 495 ~~~~~YyG~ny~RL~~IK~kYDP~nvF~~~ 524 (537)
.....| .++++-+++|+++||+|+|.++
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 344555 7999999999999999999864
No 45
>PLN02906 xanthine dehydrogenase
Probab=78.49 E-value=3.5 Score=50.58 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=54.4
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCC-ccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHHH
Q 009342 80 LFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLS-SISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQLN 157 (537)
Q Consensus 80 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 157 (537)
.-.+.|+|.+|+.++++- +. .-.+.+||++..-.- ........+||++++.++ .|..+++.++|||++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 458899999999887653 21 246788999863211 111123688999986543 344456789999999999999
Q ss_pred HHHHHh
Q 009342 158 YRIAEK 163 (537)
Q Consensus 158 ~~l~~~ 163 (537)
+.|.+.
T Consensus 305 ~~l~~~ 310 (1319)
T PLN02906 305 NLFRKV 310 (1319)
T ss_pred HHHHHH
Confidence 865443
No 46
>PLN00192 aldehyde oxidase
Probab=76.17 E-value=6.5 Score=48.32 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=55.8
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHHH
Q 009342 79 PLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQLN 157 (537)
Q Consensus 79 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 157 (537)
..-.+.|+|.+|+.++++-....+-.-.+..||++..-.-. .....++||++++... .+..+++.++|||++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 44688999999998887632100123667789998632211 2112688999985543 344456789999999999998
Q ss_pred HHHHHh
Q 009342 158 YRIAEK 163 (537)
Q Consensus 158 ~~l~~~ 163 (537)
..+.+.
T Consensus 312 ~~l~~~ 317 (1344)
T PLN00192 312 EALREE 317 (1344)
T ss_pred HHHHhh
Confidence 765543
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=74.64 E-value=7.3 Score=47.89 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=54.0
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCC-ccCCCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHHH
Q 009342 80 LFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLS-SISDVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQLN 157 (537)
Q Consensus 80 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 157 (537)
.-.+.|+|.+|+.++++- +. .-++..||++..-.- ........+||++++..+ .+..+++.++||+++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 458899999999988764 22 346788999963211 111112478999886554 344456789999999999998
Q ss_pred HHHH
Q 009342 158 YRIA 161 (537)
Q Consensus 158 ~~l~ 161 (537)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 48
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=72.73 E-value=9.8 Score=41.21 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=57.3
Q ss_pred hhHHHHhhhcCCCCCceEEcCCCcCcHHHHHhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhCC-CeEEE----
Q 009342 33 EKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNG-LQIRV---- 107 (537)
Q Consensus 33 ~~~~~~l~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~-~~~~~---- 107 (537)
+.|.+-+...+.++.|.++.-+-|.-+.+.. ++... .....|..++.|.|.++|.++|++|+++- .|+.+
T Consensus 111 krLv~kara~G~~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 111 KRLVQKARASGAPIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred HHHHHHHHhcCCCcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEec
Confidence 3466667777778999999999999887742 22222 12347899999999999999999999974 56555
Q ss_pred -EcCCC-CCCC
Q 009342 108 -RSGGH-DHEG 116 (537)
Q Consensus 108 -~ggGh-~~~g 116 (537)
|+||| |+..
T Consensus 186 GraGGHHSweD 196 (717)
T COG4981 186 GRAGGHHSWED 196 (717)
T ss_pred CccCCccchhh
Confidence 45566 4543
No 49
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=72.39 E-value=22 Score=39.49 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=23.1
Q ss_pred hhhhhhcccHHHHHHhHhhcCCCCCCcCCC
Q 009342 496 WGKKYFKNNFYRLVHVKTMVDPENFFRNEQ 525 (537)
Q Consensus 496 ~~~~YyG~ny~RL~~IK~kYDP~nvF~~~q 525 (537)
....| .++++-++|++++||+|+|.++.
T Consensus 477 l~~~Y--P~~~dF~alR~~~DP~g~F~N~y 504 (557)
T TIGR01677 477 VIRKY--PNADKFLKVKDSYDPKGLFSSEW 504 (557)
T ss_pred HHHhC--CCHHHHHHHHHhcCCCCccCCHH
Confidence 44455 48999999999999999998763
No 50
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=63.68 E-value=4.9 Score=42.89 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=23.6
Q ss_pred hhhhhhhc-ccHHHHHHhHhhcCCCCCCc
Q 009342 495 VWGKKYFK-NNFYRLVHVKTMVDPENFFR 522 (537)
Q Consensus 495 ~~~~~YyG-~ny~RL~~IK~kYDP~nvF~ 522 (537)
.|....|| ..++-+++||+.+||+|+|+
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 46666677 47999999999999999986
No 51
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=63.15 E-value=22 Score=35.83 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=51.3
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCC-ccCCCCeEEEEecCcc-c-EEEeCCCCeEEEcCCCCHHH
Q 009342 79 PLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLS-SISDVPFIIIDLINFS-E-ISVDVEDKTAWVESGATVGQ 155 (537)
Q Consensus 79 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~gividl~~l~-~-i~~d~~~~~v~v~~G~~~~~ 155 (537)
+.-+.+|.|.+|-...++ +++ .-.+.+|||+....- .......-+||++++. . ..+..+++.+++|+-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 556788999888766665 444 678889999965211 1011125678999874 2 23344567799999999999
Q ss_pred HH
Q 009342 156 LN 157 (537)
Q Consensus 156 l~ 157 (537)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 86
No 52
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=58.83 E-value=19 Score=37.40 Aligned_cols=140 Identities=17% Similarity=0.102 Sum_probs=78.2
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccC-CCCeEEEEecCcccE-EEeCCCCeEEEcCCCCHHHHH
Q 009342 80 LFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSIS-DVPFIIIDLINFSEI-SVDVEDKTAWVESGATVGQLN 157 (537)
Q Consensus 80 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~-~~~gividl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 157 (537)
..++.|.+.+|...++.. +-..++..|++++.-.-... .+-..||-+.++.++ +++...+.+++|+|+++.|.+
T Consensus 204 ~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~ 279 (493)
T COG4630 204 DRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAY 279 (493)
T ss_pred ceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHHH
Confidence 357889999998887653 23456667777753211110 011345666666554 556677899999999999999
Q ss_pred HHHHHhcCCceee----ccCC--CCcccchhhhcCCC-CCCcccccCchhhheeeEEEEcccCeeee-ccCCCCchhhhh
Q 009342 158 YRIAEKSQNLLAF----PVGT--CPSVGVGGHFSGGG-YGALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFWAI 229 (537)
Q Consensus 158 ~~l~~~g~~gl~~----~~g~--~~~vgvgG~~~ggg-~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf~a~ 229 (537)
..|..+-.. |.- .+|. -..-++||.|..|. +|-.. ..=-.++.++++-.|+-.+ -. =.|.|-++
T Consensus 280 ~~la~~~P~-l~~L~~r~gg~qvRN~gTlGGNIangSPIGDtP-----PaLIALgA~ltLr~g~~~RtlP--Le~~Fi~Y 351 (493)
T COG4630 280 RALAGRYPA-LGELWDRFGGEQVRNMGTLGGNIANGSPIGDTP-----PALIALGATLTLRSGDGRRTLP--LEDYFIAY 351 (493)
T ss_pred HHHHhhCch-HHHHHHHhcchhhhccccccccccCCCcCCCCC-----chhhhcCcEEEEEecCCccccc--HHHHHHHh
Confidence 998765321 100 0111 12234667665553 12110 0012366777776665443 22 13677776
Q ss_pred hh
Q 009342 230 RG 231 (537)
Q Consensus 230 rG 231 (537)
+-
T Consensus 352 ~k 353 (493)
T COG4630 352 GK 353 (493)
T ss_pred hh
Confidence 53
No 53
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=58.15 E-value=24 Score=39.23 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=26.4
Q ss_pred hhhhhhhhc-ccHHHHHHhHhhcCCCCCCcCCC
Q 009342 494 SVWGKKYFK-NNFYRLVHVKTMVDPENFFRNEQ 525 (537)
Q Consensus 494 ~~~~~~YyG-~ny~RL~~IK~kYDP~nvF~~~q 525 (537)
..|-..+|| +.++-+++||+.+||+|+++--.
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGK 547 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGK 547 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCc
Confidence 357778888 47999999999999999997443
No 54
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=58.07 E-value=5.4 Score=42.26 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.3
Q ss_pred ccHHHHHHhHhhcCCCCCCcC
Q 009342 503 NNFYRLVHVKTMVDPENFFRN 523 (537)
Q Consensus 503 ~ny~RL~~IK~kYDP~nvF~~ 523 (537)
.|.++-++||+++||+++|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 699999999999999999953
No 55
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=51.75 E-value=47 Score=33.11 Aligned_cols=109 Identities=16% Similarity=0.066 Sum_probs=68.9
Q ss_pred hhhccchhhHHHHhhhcCCCCCceEEcCCCcCcHHHHHhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeE
Q 009342 26 ALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQI 105 (537)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~ 105 (537)
.+..+..+.|+..|-. ...|++|+-++.+.+. . . ...++.+|++++-+...+.|.+-
T Consensus 116 Ll~~~a~~~l~~~LlP-----~a~vvTPNl~EA~~L~----------g----~----~~i~~~~d~~~a~~~i~~~g~~~ 172 (263)
T COG0351 116 LLDEEAVEALREELLP-----LATVVTPNLPEAEALS----------G----L----PKIKTEEDMKEAAKLLHELGAKA 172 (263)
T ss_pred ccChHHHHHHHHHhhc-----cCeEecCCHHHHHHHc----------C----C----CccCCHHHHHHHHHHHHHhCCCE
Confidence 3334556667766644 4679999988777652 1 1 36789999999999999999998
Q ss_pred EEEcCCCCCCCCCccCCCCeEEEEecCcccE---EEeCCCCeEEEcCCCCHHHHHHHHHHhcCC
Q 009342 106 RVRSGGHDHEGLSSISDVPFIIIDLINFSEI---SVDVEDKTAWVESGATVGQLNYRIAEKSQN 166 (537)
Q Consensus 106 ~~~ggGh~~~g~~~~~~~~gividl~~l~~i---~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~ 166 (537)
++.=|||... ... .++.|-..+..+ .++. .=+=|.||++.-.+.+-..+|..
T Consensus 173 VliKGGH~~~---~~~---D~l~~~~~~~~f~~~ri~t---~~tHGTGCTlSaAIaa~LA~G~~ 227 (263)
T COG0351 173 VLIKGGHLEG---EAV---DVLYDGGSFYTFEAPRIPT---KNTHGTGCTLSAAIAANLAKGLS 227 (263)
T ss_pred EEEcCCCCCC---Cce---eEEEcCCceEEEeccccCC---CCCCCccHHHHHHHHHHHHcCCC
Confidence 8888899764 111 233333211111 2221 12468999998766655555543
No 56
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=51.73 E-value=21 Score=36.52 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=40.7
Q ss_pred ceEEcCCCcCcHHHHHhcccccccCCCCCCCccEEEecC------CHHHHHHHHHHHHhCC------CeEEEEcCCC
Q 009342 48 EVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPF------HVSEIQAAVKCSKKNG------LQIRVRSGGH 112 (537)
Q Consensus 48 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~------~~~dv~~~v~~a~~~~------~~~~~~ggGh 112 (537)
|.|..|+...|.+.+. .-+.||. ....+++|. .+++|.++++.+.+.+ +=+.+||||.
T Consensus 18 ~vITs~~gAa~~D~~~--~~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLR--TLKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHH--HHHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 5555677778888765 3345763 355666665 4789999999998654 6677888875
No 57
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=46.40 E-value=14 Score=40.49 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=24.3
Q ss_pred hhhhhhhc-ccHHHHHHhHhhcCCCCCCcCCC
Q 009342 495 VWGKKYFK-NNFYRLVHVKTMVDPENFFRNEQ 525 (537)
Q Consensus 495 ~~~~~YyG-~ny~RL~~IK~kYDP~nvF~~~q 525 (537)
.|-..+|| +.++-+++||+.+||+|+++--.
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk 470 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGK 470 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 35455667 57999999999999999997433
No 58
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=41.87 E-value=31 Score=37.13 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=42.0
Q ss_pred ceEEcCCCcCcHHHHHhcccccccCCCCCCCccEEEecCCH------HHHHHHHHHHHhC--CCeEEEEcCCC
Q 009342 48 EVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHV------SEIQAAVKCSKKN--GLQIRVRSGGH 112 (537)
Q Consensus 48 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~------~dv~~~v~~a~~~--~~~~~~~ggGh 112 (537)
|.|..|....+.+.++ .-+.||.. ....++|..+ .+|.++++.+.+. .+=+.+||||.
T Consensus 139 ~viTs~~gAa~~D~~~--~~~~r~p~-----~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 139 GVITSPTGAAIRDILT--VLRRRFPL-----VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred EEEeCCccHHHHHHHH--HHHhcCCC-----CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 5566677788888876 44677742 4566666655 8999999998884 66788899883
No 59
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=41.02 E-value=17 Score=37.89 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.3
Q ss_pred cc-HHHHHHhHhhcCCCCCCc
Q 009342 503 NN-FYRLVHVKTMVDPENFFR 522 (537)
Q Consensus 503 ~n-y~RL~~IK~kYDP~nvF~ 522 (537)
.+ .+-.++||+++||.++|+
T Consensus 324 ~~~~~l~~~lK~~fDP~~iln 344 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFN 344 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCC
Confidence 45 677899999999999996
No 60
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=31.81 E-value=26 Score=38.65 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=17.8
Q ss_pred HHHHHHhHhhcCCCCCCcCC
Q 009342 505 FYRLVHVKTMVDPENFFRNE 524 (537)
Q Consensus 505 y~RL~~IK~kYDP~nvF~~~ 524 (537)
+.+-++|.+++||+|+|.++
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 67779999999999999875
No 61
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=30.90 E-value=2.8e+02 Score=29.55 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=32.1
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 009342 78 KPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGG 111 (537)
Q Consensus 78 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggG 111 (537)
....|+.|+-+|-...+.+.++++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5678999999999999999999999999999988
No 62
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.71 E-value=43 Score=36.03 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=39.9
Q ss_pred ceEEcCCCcCcHHHHHhcccccccCC-CCCCCccEEEecCCHHHHHHHHHHHHhC---CCeEEEEcCCC
Q 009342 48 EVLYTQNNASYSSVLKASIQNLIFST-PANPKPLFIITPFHVSEIQAAVKCSKKN---GLQIRVRSGGH 112 (537)
Q Consensus 48 ~~v~~p~~~~y~~~~~~~~~n~r~~~-~~~~~p~~vv~p~~~~dv~~~v~~a~~~---~~~~~~~ggGh 112 (537)
|.|..|+...+.+.+. .-+.||.. .....|..|==...+.+|.++++.+.+. .+=+.+||||.
T Consensus 133 ~vits~~~aa~~D~~~--~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 133 GVITSQTGAALADILH--ILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred EEEeCCccHHHHHHHH--HHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 5566677788888875 44567742 1122333333334568999999988763 45677788774
No 63
>PLN03158 methionine aminopeptidase; Provisional
Probab=26.58 E-value=96 Score=32.94 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=31.2
Q ss_pred CHHHHHHHH-HHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHH
Q 009342 87 HVSEIQAAV-KCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVG 154 (537)
Q Consensus 87 ~~~dv~~~v-~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~ 154 (537)
+..||-+++ +.+.++|..+.---.||+..- ..-.. -.+-.-..-+...+=..+++++|+||+..+
T Consensus 275 ~~~dI~~~i~~~~~~~G~~~v~~~~GHGIG~-~~He~--P~i~~~~~~~~~~~l~~GMVfTIEP~i~~g 340 (396)
T PLN03158 275 RYREVGEVINRHATMSGLSVVKSYCGHGIGE-LFHCA--PNIPHYARNKAVGVMKAGQVFTIEPMINAG 340 (396)
T ss_pred CHHHHHHHHHHHHHHcCCCccCCccCCcccc-ccCCC--CCCCcccCCCCCCEecCCcEEEECCeeccC
Confidence 345555544 445667776533335787531 11111 011000111112233567899999998764
No 64
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=26.07 E-value=4.6e+02 Score=29.34 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=22.7
Q ss_pred hhhhhhhhcccHHHHHHhHhhcCCCCCCcCC
Q 009342 494 SVWGKKYFKNNFYRLVHVKTMVDPENFFRNE 524 (537)
Q Consensus 494 ~~~~~~YyG~ny~RL~~IK~kYDP~nvF~~~ 524 (537)
..+...| . +++-++|.+++||+|+|.++
T Consensus 537 ~~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 537 ERLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 3455555 3 99999999999999999875
No 65
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=25.30 E-value=72 Score=30.05 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009342 91 IQAAVKCSKKNGLQIRVRSGGHDHEG 116 (537)
Q Consensus 91 v~~~v~~a~~~~~~~~~~ggGh~~~g 116 (537)
....++|++++++||.|.++|.++.-
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI 103 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFI 103 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHH
Confidence 45678999999999999999998643
No 66
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=24.63 E-value=4.3e+02 Score=29.53 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCccCCCCeEEEEecC--c-cc--EEEeCCC---CeEEEcCCC----CHHH
Q 009342 88 VSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLIN--F-SE--ISVDVED---KTAWVESGA----TVGQ 155 (537)
Q Consensus 88 ~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gividl~~--l-~~--i~~d~~~---~~v~v~~G~----~~~~ 155 (537)
.++|.+.++.+.+++-++.....-.++.....+.+ |+||-|- | +. --.++++ .+..|=|-- ...+
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD---VIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vYq~ 388 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD---VIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVYQV 388 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC---eEEecCcHHHHhccCCccCCCCCcccceeecCCccchHHHHH
Confidence 57799999999999999999988777766666554 8888763 2 11 0112222 233333322 2457
Q ss_pred HHHHHHHhcCCceeeccCCCCcccchhhhcCCC--CCCcccccCchhhheeeEEEEcccCeeee-ccCCCCchhhhhh
Q 009342 156 LNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGG--YGALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFWAIR 230 (537)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg--~g~~s~~~G~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf~a~r 230 (537)
+++.+.++|. +-+-+.++|-=.|++.--+ +|..-..|-...|- .++||+.+|+++- -.-+.-|+|.++.
T Consensus 389 ~I~~ck~nGa----fDp~TmGsV~NVGLMAqKAEEYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve~GDIwRmcq 460 (741)
T TIGR00178 389 VIEDCKQNGA----FDPTTMGTVPNVGLMAQKAEEYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVEAGDIWRMCQ 460 (741)
T ss_pred HHHHHHhcCC----CCcccccCCcchhHhHHHHHHhcCCCcceecCCCc--eEEEEeCCCCEEEEeeccCCcchhhhh
Confidence 7788888884 4444444443334443222 22221222222232 3678899999984 3345678888765
No 67
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=24.01 E-value=36 Score=28.33 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=10.4
Q ss_pred HHhHhhcCCCCCCc
Q 009342 509 VHVKTMVDPENFFR 522 (537)
Q Consensus 509 ~~IK~kYDP~nvF~ 522 (537)
.+|.+||||+|-+.
T Consensus 79 ~~l~~KyDp~~~y~ 92 (95)
T PF03392_consen 79 EELVKKYDPEGKYR 92 (95)
T ss_dssp HHHHHHHTTT-TTH
T ss_pred HHHHHHHCCCcchh
Confidence 45789999999764
No 68
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.94 E-value=50 Score=35.32 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=38.7
Q ss_pred ceEEcCCCcCcHHHHHhcccccccCCCCCCCccEEEecC------CHHHHHHHHHHHHhCC-Ce--EEEEcCCC
Q 009342 48 EVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPF------HVSEIQAAVKCSKKNG-LQ--IRVRSGGH 112 (537)
Q Consensus 48 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~------~~~dv~~~v~~a~~~~-~~--~~~~ggGh 112 (537)
|.|..|......+.+. .-..||. .-..+|+|+ .+++|.++|+.|++.+ +. ++.||||+
T Consensus 139 GVITS~tgAairDIl~--~~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 139 GVITSPTGAALRDILH--TLSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred EEEcCCchHHHHHHHH--HHHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 5566666666776654 3456774 245666665 4689999999999977 44 55566653
No 69
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=23.18 E-value=1.1e+02 Score=27.51 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=26.5
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCeEEEEc
Q 009342 80 LFIITPFHVSEIQAAVKCSKKNGLQIRVRS 109 (537)
Q Consensus 80 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g 109 (537)
..|+.|.+.+|+..+++.|-+.+-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 478999999999999999998888888773
No 70
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.49 E-value=1.1e+02 Score=28.64 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=31.1
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEE
Q 009342 70 IFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRV 107 (537)
Q Consensus 70 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~ 107 (537)
||-. ...|..||.+.+++++.++.+.|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 6754 56899999999999999999999999887554
No 71
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=22.08 E-value=1.3e+02 Score=27.70 Aligned_cols=31 Identities=10% Similarity=0.266 Sum_probs=26.4
Q ss_pred cEEEecCCHHHHHHHHHHHHh--CCCeEEEEcC
Q 009342 80 LFIITPFHVSEIQAAVKCSKK--NGLQIRVRSG 110 (537)
Q Consensus 80 ~~vv~p~~~~dv~~~v~~a~~--~~~~~~~~gg 110 (537)
..|+.|.+.+|+..+++.|-+ .+-|+.+|-.
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 678999999999999999999 6788888754
No 72
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=21.00 E-value=82 Score=34.02 Aligned_cols=91 Identities=11% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhhhhccchhhHHHHhhhcCCCCCceEEcC-CCcCcHHHHHhcccccccCCCCCCCccE
Q 009342 3 PHGLMCPNILSFISSLLLLSHGVALAAENHEKFLKCLSLQSDTISEVLYTQ-NNASYSSVLKASIQNLIFSTPANPKPLF 81 (537)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~p-~~~~y~~~~~~~~~n~r~~~~~~~~p~~ 81 (537)
-+|+|..+++-++++-++.---=+-|++..+-|-..+-... -+| .++.|.+... -. ...|.-
T Consensus 183 hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~-------SFPle~~~~PeL~~-------kG---aYs~~~ 245 (542)
T KOG2499|consen 183 HRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQ-------SFPLESPTFPELHR-------KG---AYSPRH 245 (542)
T ss_pred ccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCC-------CCccccCCchhhhh-------cC---CCCcce
Confidence 36777777777777766644333334444443333331111 011 2344444421 11 123333
Q ss_pred EEecCCHHHHHHHHHHHHhCCCeEEEE--cCCCC
Q 009342 82 IITPFHVSEIQAAVKCSKKNGLQIRVR--SGGHD 113 (537)
Q Consensus 82 vv~p~~~~dv~~~v~~a~~~~~~~~~~--ggGh~ 113 (537)
| -|.+||+++|++|+-+||+|.+- .-||.
T Consensus 246 v---YT~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 246 V---YTREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred e---ecHHHHHHHHHHHHhccceeeecccCCccc
Confidence 3 47899999999999999999874 45664
Done!