BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009343
         (537 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H3O|B Chain B, Crystal Structure Of The Human Taf4-Taf12
           (Tafii135-Tafii20) Complex
 pdb|1H3O|D Chain D, Crystal Structure Of The Human Taf4-Taf12
           (Tafii135-Tafii20) Complex
          Length = 76

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 55/69 (79%)

Query: 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460
           +LTK+ +Q+LV ++DP+E+LD DVE+ L+ IA+DF+ES+    C LA+HRKS TLE KD+
Sbjct: 5   VLTKKKLQDLVREVDPNEQLDEDVEEXLLQIADDFIESVVTAACQLARHRKSSTLEVKDV 64

Query: 461 LVHLERNWN 469
            +HLER WN
Sbjct: 65  QLHLERQWN 73


>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From Methanothermus
           Fervidus
          Length = 69

 Score = 28.9 bits (63), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 417 SERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460
           +ER+  D    L  + E+  E I      LAKH    T++A+DI
Sbjct: 18  AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61


>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From Methanothermus
           Fervidus
 pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From Methanothermus
           Fervidus
          Length = 68

 Score = 28.5 bits (62), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 417 SERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460
           +ER+  D    L  + E+  E I      LAKH    T++A+DI
Sbjct: 17  AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,007,401
Number of Sequences: 62578
Number of extensions: 331255
Number of successful extensions: 519
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 4
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)