BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009343
         (537 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8VE65|TAF12_MOUSE Transcription initiation factor TFIID subunit 12 OS=Mus musculus
           GN=Taf12 PE=1 SV=1
          Length = 161

 Score =  136 bits (342), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 81/104 (77%)

Query: 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAK 458
           N++LTK+ +Q+LV ++DP+E+LD DVE++L+ IA+DF+ES+    C LA+HRKS TLE K
Sbjct: 55  NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114

Query: 459 DILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKS 502
           D+ +HLER WNM +PGF  +EI+ ++K    + HK+R+A I+K+
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 158


>sp|Q3T174|TAF12_BOVIN Transcription initiation factor TFIID subunit 12 OS=Bos taurus
           GN=TAF12 PE=2 SV=1
          Length = 161

 Score =  135 bits (341), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 81/104 (77%)

Query: 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAK 458
           N++LTK+ +Q+LV ++DP+E+LD DVE++L+ IA+DF+ES+    C LA+HRKS TLE K
Sbjct: 55  NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114

Query: 459 DILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKS 502
           D+ +HLER WNM +PGF  +EI+ ++K    + HK+R+A I+K+
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 158


>sp|Q16514|TAF12_HUMAN Transcription initiation factor TFIID subunit 12 OS=Homo sapiens
           GN=TAF12 PE=1 SV=1
          Length = 161

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 81/104 (77%)

Query: 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAK 458
           N++LTK+ +Q+LV ++DP+E+LD DVE++L+ IA+DF+ES+    C LA+HRKS TLE K
Sbjct: 55  NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114

Query: 459 DILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKS 502
           D+ +HLER WNM +PGF  +EI+ ++K    + HK+R+A I+K+
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 158


>sp|Q91858|TAF12_XENLA Transcription initiation factor TFIID subunit 12 OS=Xenopus laevis
           GN=taf12 PE=2 SV=1
          Length = 164

 Score =  133 bits (335), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 81/105 (77%)

Query: 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEA 457
            N++L+K+ + +LV ++DP+E+LD DVE++L+ IA+DF+ES+    C LA+HRKS+TLE 
Sbjct: 57  ANQVLSKKKLHDLVREVDPNEQLDEDVEEMLLQIADDFIESVVSAACQLARHRKSNTLEV 116

Query: 458 KDILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKS 502
           KD+ +HLER WNM +PGF  +EI+ ++K    + HK+R+A IKK+
Sbjct: 117 KDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIKKT 161


>sp|Q555L9|TAF12_DICDI Transcription initiation factor TFIID subunit 12 OS=Dictyostelium
           discoideum GN=TAF12 PE=3 SV=2
          Length = 627

 Score =  133 bits (334), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)

Query: 400 RILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKD 459
            +L KR + EL+ QI P+E++D D EDIL  +A+DFVES   F C+LAKHR S TLE KD
Sbjct: 440 EVLGKRKLIELLQQISPNEKMDEDAEDILSVLADDFVESTVAFACTLAKHRNSTTLEVKD 499

Query: 460 ILVHLERNWNMTLPGFSG-DEIKTFRKPLVCDIHKERLAAIKKSVMATEVASAR 512
           +  HLE+NWN+ +PGF   ++ KTF+KP   + HK R+AA+KKS+  T+ +S +
Sbjct: 500 LQCHLEKNWNIRVPGFGNVEQYKTFKKPHFPENHKLRVAAMKKSIALTQASSRK 553


>sp|Q03761|TAF12_YEAST Transcription initiation factor TFIID subunit 12 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=TAF12 PE=1
           SV=1
          Length = 539

 Score =  125 bits (313), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 86/126 (68%), Gaps = 9/126 (7%)

Query: 400 RILTKRSIQELVNQI-----DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDT 454
           R+++KR ++ELV  +     D    +D DVE++L+D+A+DFV ++T F C LAKHRKSD 
Sbjct: 413 RVMSKRKLRELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKSDN 472

Query: 455 LEAKDILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKSVMATEVASARTT 514
           LEA+DI +HLERNWN+ +PG+S DEI++ RK      + ++L    +S+ + +VA+A+  
Sbjct: 473 LEARDIQLHLERNWNIRIPGYSADEIRSTRKWNPSQNYNQKL----QSITSDKVAAAKNN 528

Query: 515 GGQAAA 520
           G   A+
Sbjct: 529 GNNVAS 534


>sp|O13722|TAF12_SCHPO Transcription initiation factor TFIID subunit 12
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=taf12 PE=1 SV=1
          Length = 450

 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 75/89 (84%), Gaps = 1/89 (1%)

Query: 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEA 457
           GNR+L+KR + +L+ QID  E+++P+VE++L++IA++FVES+T F C LAKHRKSDTL+ 
Sbjct: 339 GNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTLDV 398

Query: 458 KDILVHLERNWNMTLPGFSGDEI-KTFRK 485
           +D+ +HLERNWN+ LPGF+ D+I K+ RK
Sbjct: 399 RDVQLHLERNWNIRLPGFASDDIVKSARK 427


>sp|P49905|TAF12_DROME Transcription initiation factor TFIID subunit 12 OS=Drosophila
           melanogaster GN=Taf12 PE=1 SV=1
          Length = 196

 Score =  108 bits (271), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 72/103 (69%)

Query: 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460
           +LTK  + ELV ++D + +LD DVE++L+ I +DFVE       + AKHRKS+ +E +D+
Sbjct: 91  MLTKPRLTELVREVDTTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDV 150

Query: 461 LVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKSV 503
            +H ER +NM +PGF  DE++ +++  V + HK+RLA I+K++
Sbjct: 151 QLHFERKYNMWIPGFGTDELRPYKRAAVTEAHKQRLALIRKTI 193


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.123    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,284,738
Number of Sequences: 539616
Number of extensions: 11523954
Number of successful extensions: 237182
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2365
Number of HSP's successfully gapped in prelim test: 5329
Number of HSP's that attempted gapping in prelim test: 78989
Number of HSP's gapped (non-prelim): 61931
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)