Query 009343
Match_columns 537
No_of_seqs 126 out of 187
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 03:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3o_B Transcription initiatio 100.0 2.8E-33 9.6E-38 230.1 9.4 75 398-472 2-76 (76)
2 2hue_C Histone H4; mini beta s 99.0 7.1E-10 2.4E-14 91.2 7.2 79 397-477 6-84 (84)
3 1id3_B Histone H4; nucleosome 98.9 1.4E-09 4.9E-14 92.8 7.6 79 396-476 23-101 (102)
4 1tzy_D Histone H4-VI; histone- 98.9 3E-09 1E-13 90.4 7.5 80 396-477 24-103 (103)
5 2yfw_B Histone H4, H4; cell cy 98.8 4E-09 1.4E-13 89.7 7.0 78 397-476 25-102 (103)
6 1ku5_A HPHA, archaeal histon; 98.8 1.7E-08 6E-13 79.8 7.3 64 401-465 6-69 (70)
7 1b67_A Protein (histone HMFA); 98.6 6.7E-08 2.3E-12 75.6 7.6 65 401-466 2-66 (68)
8 3b0c_W CENP-W, centromere prot 98.6 6.5E-08 2.2E-12 78.0 7.1 70 399-468 2-71 (76)
9 3b0c_T CENP-T, centromere prot 98.6 6.3E-08 2.2E-12 83.8 7.3 72 399-471 5-76 (111)
10 1taf_A TFIID TBP associated fa 98.5 5.5E-07 1.9E-11 72.8 8.3 63 405-468 5-67 (68)
11 1n1j_A NF-YB; histone-like PAI 98.4 9.7E-07 3.3E-11 73.2 8.4 70 397-466 4-74 (93)
12 1f1e_A Histone fold protein; a 98.4 7.9E-07 2.7E-11 81.3 8.6 73 395-468 76-148 (154)
13 2ly8_A Budding yeast chaperone 98.4 5.2E-07 1.8E-11 80.1 6.8 62 415-477 60-121 (121)
14 2l5a_A Histone H3-like centrom 98.2 3E-06 1E-10 82.2 9.3 75 401-477 153-235 (235)
15 3nqj_A Histone H3-like centrom 98.2 3.5E-06 1.2E-10 70.4 7.6 65 401-465 3-73 (82)
16 1jfi_B DR1 protein, transcript 98.2 4.2E-06 1.5E-10 78.3 8.6 72 395-466 9-80 (179)
17 3r45_A Histone H3-like centrom 98.2 2.6E-06 8.9E-11 78.5 6.5 70 396-465 72-147 (156)
18 2hue_B Histone H3; mini beta s 98.1 5.3E-06 1.8E-10 68.6 7.7 66 401-466 3-72 (77)
19 3nqu_A Histone H3-like centrom 98.1 3.6E-06 1.2E-10 76.4 6.7 70 396-465 56-131 (140)
20 1tzy_C Histone H3; histone-fol 98.1 7.5E-06 2.6E-10 73.8 8.2 71 396-466 57-131 (136)
21 2yfv_A Histone H3-like centrom 98.1 4.9E-06 1.7E-10 71.6 6.6 70 396-465 22-98 (100)
22 3b0b_B CENP-S, centromere prot 98.0 4.7E-06 1.6E-10 72.4 5.2 61 407-467 25-87 (107)
23 1taf_B TFIID TBP associated fa 98.0 3.1E-05 1.1E-09 63.0 9.0 66 399-465 4-69 (70)
24 3v9r_A MHF1, uncharacterized p 98.0 1.7E-05 5.8E-10 67.2 7.6 61 408-468 19-81 (90)
25 1f1e_A Histone fold protein; a 97.9 2.6E-05 9E-10 71.3 8.1 66 401-466 4-69 (154)
26 2byk_B Chrac-14; nucleosome sl 97.9 2.8E-05 9.6E-10 68.8 7.6 71 397-467 5-76 (128)
27 4dra_A Centromere protein S; D 97.8 2.2E-05 7.4E-10 69.2 5.9 60 409-468 35-96 (113)
28 1n1j_B NF-YC; histone-like PAI 97.7 9.7E-05 3.3E-09 62.0 7.5 77 395-471 13-89 (97)
29 3vh5_A CENP-S; histone fold, c 97.6 6.8E-05 2.3E-09 68.2 5.8 54 416-469 36-89 (140)
30 2nqb_D Histone H2B; nucleosome 97.5 0.00014 4.9E-09 64.9 6.9 66 405-474 37-102 (123)
31 1tzy_B Histone H2B; histone-fo 97.5 0.00021 7.1E-09 64.1 6.9 65 406-474 41-105 (126)
32 3b0b_C CENP-X, centromere prot 97.4 0.0005 1.7E-08 57.3 7.6 69 396-464 3-73 (81)
33 2l5a_A Histone H3-like centrom 97.3 0.00035 1.2E-08 68.0 7.1 101 399-504 9-117 (235)
34 4g92_C HAPE; transcription fac 97.3 0.0008 2.7E-08 58.6 8.5 75 397-471 37-111 (119)
35 2jss_A Chimera of histone H2B. 97.1 0.0016 5.3E-08 60.7 8.6 64 404-467 6-69 (192)
36 1jfi_A Transcription regulator 97.0 0.00083 2.9E-08 56.7 5.9 74 398-471 8-81 (98)
37 4dra_E Centromere protein X; D 97.0 0.0025 8.6E-08 53.6 8.0 67 398-464 9-77 (84)
38 2nqb_C Histone H2A; nucleosome 96.6 0.0044 1.5E-07 54.7 7.4 68 399-466 21-88 (123)
39 2f8n_G Core histone macro-H2A. 96.6 0.0052 1.8E-07 54.1 7.3 68 399-466 20-87 (120)
40 1tzy_A Histone H2A-IV; histone 96.5 0.0037 1.3E-07 55.6 6.3 68 399-466 23-90 (129)
41 1id3_C Histone H2A.1; nucleoso 96.5 0.0045 1.5E-07 55.2 6.7 68 399-466 23-90 (131)
42 2f8n_K Histone H2A type 1; nuc 96.5 0.0053 1.8E-07 56.1 7.1 68 399-466 42-109 (149)
43 1bh9_B TAFII28; histone fold, 96.3 0.017 5.8E-07 48.7 8.3 65 401-466 16-81 (89)
44 1f66_C Histone H2A.Z; nucleoso 96.2 0.011 3.7E-07 52.6 7.1 68 399-466 25-93 (128)
45 2byk_A Chrac-16; nucleosome sl 95.9 0.011 3.7E-07 53.2 5.7 75 397-471 15-90 (140)
46 2jss_A Chimera of histone H2B. 95.8 0.023 7.8E-07 52.9 7.9 68 399-466 103-171 (192)
47 3uk6_A RUVB-like 2; hexameric 93.3 0.26 9E-06 46.1 8.4 68 402-469 259-332 (368)
48 3v9r_B MHF2, uncharacterized p 91.8 0.19 6.6E-06 42.9 4.9 61 401-461 1-70 (88)
49 1h3o_A Transcription initiatio 90.8 0.24 8.3E-06 41.0 4.3 49 404-453 9-57 (75)
50 2r44_A Uncharacterized protein 90.1 0.81 2.8E-05 42.7 7.8 73 399-472 207-302 (331)
51 1g8p_A Magnesium-chelatase 38 89.7 0.94 3.2E-05 41.9 7.9 56 417-472 265-327 (350)
52 2qby_A CDC6 homolog 1, cell di 89.7 1.4 4.7E-05 40.6 8.9 67 401-467 196-272 (386)
53 2ly8_A Budding yeast chaperone 88.8 1.2 4E-05 39.7 7.4 50 401-450 1-57 (121)
54 2v1u_A Cell division control p 88.3 0.67 2.3E-05 42.8 5.8 66 402-467 201-276 (387)
55 3aji_B S6C, proteasome (prosom 86.6 0.32 1.1E-05 38.0 2.3 53 426-483 26-82 (83)
56 3bos_A Putative DNA replicatio 85.3 1.7 5.8E-05 37.2 6.3 62 403-465 175-241 (242)
57 1fnn_A CDC6P, cell division co 84.2 2 6.8E-05 39.9 6.7 66 402-467 193-274 (389)
58 2qby_B CDC6 homolog 3, cell di 83.8 3.7 0.00013 38.3 8.4 64 402-467 197-270 (384)
59 3kw6_A 26S protease regulatory 83.6 0.54 1.8E-05 36.5 2.3 44 425-468 27-74 (78)
60 1r6b_X CLPA protein; AAA+, N-t 83.1 5.8 0.0002 41.8 10.4 64 416-479 369-445 (758)
61 3vlf_B 26S protease regulatory 83.1 0.48 1.7E-05 38.1 1.8 42 426-467 26-71 (88)
62 3ox6_A Calcium-binding protein 82.6 5.4 0.00019 31.3 7.8 73 396-470 22-120 (153)
63 3h4m_A Proteasome-activating n 82.6 1.5 5.3E-05 39.6 5.1 68 402-469 188-260 (285)
64 3nbx_X ATPase RAVA; AAA+ ATPas 81.2 5.7 0.0002 41.3 9.4 66 399-466 206-284 (500)
65 1lv7_A FTSH; alpha/beta domain 80.8 1.6 5.6E-05 39.2 4.6 65 403-467 183-252 (257)
66 3k1j_A LON protease, ATP-depen 80.8 4.2 0.00014 42.3 8.3 51 416-466 311-374 (604)
67 2c9o_A RUVB-like 1; hexameric 78.3 4.3 0.00015 40.5 7.2 69 402-470 366-440 (456)
68 1w5s_A Origin recognition comp 77.5 7.5 0.00026 36.5 8.2 68 401-468 214-294 (412)
69 2chg_A Replication factor C sm 77.2 3.7 0.00013 34.1 5.4 63 401-465 160-224 (226)
70 1fh1_A NODF, nodulation protei 76.7 1.4 4.8E-05 35.1 2.6 26 448-473 39-64 (92)
71 2qz4_A Paraplegin; AAA+, SPG7, 76.0 2.7 9.1E-05 37.2 4.4 66 402-467 177-249 (262)
72 3pvs_A Replication-associated 75.9 9.1 0.00031 38.8 8.8 66 402-467 165-244 (447)
73 1ixz_A ATP-dependent metallopr 75.6 1.8 6.2E-05 38.8 3.3 62 403-464 187-253 (254)
74 1hqc_A RUVB; extended AAA-ATPa 75.4 8.5 0.00029 35.2 7.8 66 401-466 167-237 (324)
75 3iot_A Maltose-binding protein 75.0 0.59 2E-05 45.5 -0.0 15 319-333 381-395 (449)
76 1elk_A Target of MYB1; superhe 73.0 8.8 0.0003 34.2 7.0 38 401-438 93-131 (157)
77 2krk_A 26S protease regulatory 73.0 1.5 5E-05 35.5 1.8 42 426-467 36-81 (86)
78 1iy2_A ATP-dependent metallopr 72.6 1.8 6.2E-05 39.7 2.6 62 403-464 211-277 (278)
79 1in4_A RUVB, holliday junction 72.2 6.7 0.00023 37.4 6.5 67 400-466 178-249 (334)
80 2i5u_A DNAD domain protein; st 71.6 15 0.00052 29.4 7.5 56 407-465 4-68 (83)
81 3f9v_A Minichromosome maintena 70.4 2.5 8.6E-05 44.4 3.4 47 419-465 521-585 (595)
82 1bh9_A TAFII18; histone fold, 69.1 15 0.00051 27.5 6.4 42 405-446 4-45 (45)
83 2lte_A Specialized acyl carrie 71.9 1 3.4E-05 37.5 0.0 31 444-475 50-80 (103)
84 1njg_A DNA polymerase III subu 67.6 8.9 0.0003 32.0 5.5 59 402-464 185-248 (250)
85 3f8t_A Predicted ATPase involv 67.1 9.4 0.00032 40.8 6.9 68 398-465 390-481 (506)
86 1x5b_A Signal transducing adap 66.9 16 0.00054 32.9 7.3 66 401-478 91-156 (163)
87 1pq4_A Periplasmic binding pro 66.9 3.2 0.00011 39.8 3.0 77 400-476 134-215 (291)
88 1wwi_A Hypothetical protein TT 66.7 10 0.00036 34.9 6.2 59 401-460 2-60 (148)
89 3k21_A PFCDPK3, calcium-depend 65.6 28 0.00096 29.8 8.4 69 395-465 62-149 (191)
90 3eie_A Vacuolar protein sortin 65.2 2.8 9.7E-05 39.5 2.3 59 402-460 184-248 (322)
91 2i7a_A Calpain 13; calcium-dep 63.8 18 0.00061 31.4 6.9 74 393-467 12-104 (174)
92 2l4b_A Acyl carrier protein; i 63.6 2.4 8.2E-05 33.0 1.2 31 444-474 35-65 (88)
93 3syl_A Protein CBBX; photosynt 63.6 6.4 0.00022 35.9 4.2 66 403-468 205-287 (309)
94 2aao_A CDPK, calcium-dependent 62.1 37 0.0013 27.2 8.1 28 439-466 100-127 (166)
95 3h7c_X Agmatine deiminase; str 61.9 5 0.00017 41.2 3.5 70 439-509 175-266 (383)
96 2dhr_A FTSH; AAA+ protein, hex 61.8 3.4 0.00012 43.0 2.3 65 403-467 202-271 (499)
97 1r4v_A Hypothetical protein AQ 61.2 9.2 0.00032 36.0 4.8 61 399-460 24-84 (171)
98 3mfq_A TROA, high-affinity zin 60.9 12 0.0004 35.8 5.7 76 399-474 104-186 (282)
99 2r62_A Cell division protease 60.2 1.1 3.7E-05 40.3 -1.5 63 404-466 185-252 (268)
100 2kwl_A ACP, acyl carrier prote 60.2 2.6 8.8E-05 32.3 0.8 27 448-474 37-63 (84)
101 2pvb_A Protein (parvalbumin); 59.8 19 0.00064 27.6 5.7 65 402-467 6-70 (108)
102 3qrx_A Centrin; calcium-bindin 59.4 62 0.0021 26.0 9.0 70 395-466 38-129 (169)
103 3pfi_A Holliday junction ATP-d 58.5 8.4 0.00029 35.8 4.1 65 402-466 184-253 (338)
104 1sxj_D Activator 1 41 kDa subu 57.8 8 0.00027 35.6 3.8 64 402-465 192-261 (353)
105 2lnk_A Protein S100-A4; EF-han 57.7 44 0.0015 28.1 8.1 48 397-444 35-96 (113)
106 1juq_A ADP-ribosylation factor 57.7 23 0.00078 32.1 6.7 66 400-478 88-158 (171)
107 2o1e_A YCDH; alpha-beta protei 57.6 5.2 0.00018 38.9 2.6 76 400-475 134-214 (312)
108 2prs_A High-affinity zinc upta 57.5 8.3 0.00028 36.6 4.0 75 400-474 118-197 (284)
109 2mys_C Myosin; muscle protein, 57.5 54 0.0019 25.5 8.1 21 395-415 18-38 (149)
110 1dv5_A APO-DCP, APO-D-alanyl c 57.5 2.7 9.3E-05 32.6 0.6 29 446-474 30-58 (80)
111 1ofh_A ATP-dependent HSL prote 57.4 9.5 0.00032 34.3 4.1 50 418-467 233-299 (310)
112 2keb_A DNA polymerase subunit 57.0 20 0.0007 31.3 5.9 62 399-467 23-91 (101)
113 2cgq_A Acyl carrier protein AC 56.7 0.99 3.4E-05 38.7 -2.3 50 423-474 30-79 (113)
114 2qp9_X Vacuolar protein sortin 56.0 9.3 0.00032 36.9 4.1 50 403-452 218-273 (355)
115 3dtp_E RLC, myosin regulatory 55.8 36 0.0012 29.1 7.3 73 395-471 67-157 (196)
116 1rr7_A Middle operon regulator 55.7 13 0.00043 32.6 4.5 55 408-474 12-73 (129)
117 3fs7_A Parvalbumin, thymic; ca 55.6 17 0.00059 27.8 4.9 64 400-466 5-70 (109)
118 1rro_A RAT oncomodulin; calciu 55.6 18 0.0006 27.7 4.9 66 401-467 5-70 (108)
119 4e2i_2 DNA polymerase alpha su 55.2 12 0.00042 31.2 4.1 40 407-446 5-52 (78)
120 1exr_A Calmodulin; high resolu 54.9 67 0.0023 25.6 8.4 26 441-466 86-111 (148)
121 3fi7_A LMO1076 protein; lister 54.6 13 0.00045 34.6 4.7 53 418-471 10-68 (183)
122 3e3r_A Calcyphosin, calcyphosi 54.6 33 0.0011 28.7 6.8 70 395-466 47-137 (204)
123 3gi1_A LBP, laminin-binding pr 54.4 6.4 0.00022 37.7 2.7 74 401-474 124-202 (286)
124 2zyc_A Peptidoglycan hydrolase 54.3 7.4 0.00025 35.5 2.9 41 431-472 1-41 (170)
125 3hvm_A Agmatine deiminase; hyd 54.2 5 0.00017 40.4 2.0 71 439-510 153-245 (330)
126 3gzm_A Acyl carrier protein; h 53.9 3.3 0.00011 31.7 0.5 27 448-474 33-59 (81)
127 4b4t_K 26S protease regulatory 53.6 12 0.00042 38.4 4.7 50 419-468 361-415 (428)
128 3vfd_A Spastin; ATPase, microt 53.5 31 0.0011 33.3 7.3 65 402-466 282-364 (389)
129 3cx3_A Lipoprotein; zinc-bindi 53.4 8.1 0.00028 36.7 3.2 77 399-475 120-201 (284)
130 1k9u_A Polcalcin PHL P 7; poll 53.0 25 0.00085 25.4 5.1 20 396-415 14-33 (78)
131 3us6_A Histidine-containing ph 52.7 23 0.0008 31.3 5.8 49 404-452 7-66 (153)
132 3fwb_A Cell division control p 52.0 50 0.0017 26.2 7.2 70 395-466 33-124 (161)
133 5pal_A Parvalbumin; calcium-bi 51.9 15 0.00053 28.1 4.0 65 400-467 4-70 (109)
134 3e3r_A Calcyphosin, calcyphosi 51.5 13 0.00044 31.2 3.8 14 458-471 190-203 (204)
135 4b4t_I 26S protease regulatory 51.5 8.7 0.0003 40.1 3.3 60 408-467 359-423 (437)
136 1bu3_A Calcium-binding protein 51.2 24 0.00083 27.0 5.1 67 400-467 5-71 (109)
137 2qnw_A Acyl carrier protein; m 51.0 3.7 0.00013 31.4 0.4 26 449-474 36-61 (82)
138 1rwy_A Parvalbumin alpha; EF-h 50.9 20 0.00067 27.4 4.5 66 401-467 5-70 (109)
139 2dnw_A Acyl carrier protein; A 50.8 1.8 6.3E-05 34.8 -1.5 25 450-474 45-69 (99)
140 1k94_A Grancalcin; penta-EF-ha 50.4 58 0.002 26.5 7.5 31 439-470 71-101 (165)
141 1juo_A Sorcin; calcium-binding 50.1 40 0.0014 28.6 6.7 72 395-466 42-131 (198)
142 4b4t_H 26S protease regulatory 49.9 9.9 0.00034 40.0 3.4 62 406-467 384-450 (467)
143 3pm8_A PFCDPK2, calcium-depend 49.2 42 0.0014 28.9 6.8 34 395-429 67-100 (197)
144 2f2o_A Calmodulin fused with c 49.1 88 0.003 25.4 8.4 27 440-466 86-112 (179)
145 1top_A Troponin C; contractIle 49.1 60 0.0021 25.7 7.2 29 438-466 96-124 (162)
146 2lv7_A Calcium-binding protein 49.0 32 0.0011 27.7 5.6 18 397-414 48-65 (100)
147 1dly_A Hemoglobin; oxygen stor 48.8 24 0.00082 31.8 5.3 79 425-506 52-137 (164)
148 1yvi_A Histidine-containing ph 48.5 27 0.00092 30.4 5.5 45 404-448 7-63 (149)
149 1mhq_A ADP-ribosylation factor 48.5 39 0.0013 29.9 6.6 64 401-477 77-143 (148)
150 2ce7_A Cell division protein F 48.4 9.8 0.00033 39.4 3.1 60 408-467 192-256 (476)
151 2jq4_A AGR_C_4658P, hypothetic 48.4 2 6.9E-05 35.6 -1.6 25 450-474 53-77 (105)
152 1pva_A Parvalbumin; calcium bi 48.0 23 0.00077 27.1 4.4 64 401-467 6-71 (110)
153 2chq_A Replication factor C sm 47.9 26 0.00088 31.5 5.4 61 402-464 161-223 (319)
154 3li6_A Calcium-binding protein 47.6 65 0.0022 22.1 6.5 43 424-466 22-64 (66)
155 2jnf_A Troponin C; stretch act 47.6 69 0.0023 25.5 7.4 34 396-431 25-58 (158)
156 3ncv_A DNA mismatch repair pro 47.4 12 0.00039 35.3 3.1 38 439-477 161-198 (220)
157 2bl0_C Myosin regulatory light 47.3 91 0.0031 24.2 7.9 35 395-431 16-50 (142)
158 2dzn_B 26S protease regulatory 47.3 15 0.00052 28.7 3.4 32 436-467 37-68 (82)
159 3mse_B Calcium-dependent prote 46.5 51 0.0017 27.6 6.7 34 395-431 49-82 (180)
160 1x3o_A Acyl carrier protein; s 45.8 4.8 0.00016 30.0 0.3 26 449-474 34-59 (80)
161 3nxa_A Protein S100-A16; S100 45.7 55 0.0019 26.5 6.6 49 398-446 27-88 (100)
162 2a7w_A PRA-PH, phosphoribosyl- 45.4 23 0.00078 31.3 4.5 58 422-492 55-112 (116)
163 3kdg_A DNA mismatch repair pro 45.3 20 0.00067 32.7 4.2 38 439-477 138-175 (197)
164 2kyc_A Parvalbumin-3, parvalbu 45.1 23 0.00078 27.1 4.0 23 400-422 4-26 (108)
165 4hw4_A Induced myeloid leukemi 44.5 19 0.00063 32.5 3.9 46 404-452 55-110 (157)
166 1sxj_B Activator 1 37 kDa subu 44.5 27 0.00091 31.5 5.0 60 402-463 166-227 (323)
167 2lol_A ACP, acyl carrier prote 44.3 3.6 0.00012 31.1 -0.7 26 449-474 35-60 (81)
168 3pxg_A Negative regulator of g 43.9 35 0.0012 34.4 6.2 65 402-466 325-405 (468)
169 1gjy_A Sorcin, CP-22, V19; cal 43.9 1.3E+02 0.0044 24.5 8.6 71 396-466 12-100 (167)
170 1jfj_A Ehcabp, calcium-binding 43.4 43 0.0015 25.4 5.3 21 395-415 10-30 (134)
171 1l8q_A Chromosomal replication 42.6 19 0.00064 33.5 3.7 64 417-485 183-253 (324)
172 2ovk_C Myosin catalytic light 42.5 16 0.00054 29.5 2.9 70 396-466 22-113 (159)
173 1dlw_A Hemoglobin; oxygen stor 41.9 41 0.0014 27.4 5.3 79 425-506 9-92 (116)
174 3k9o_A Ubiquitin-conjugating e 41.4 66 0.0023 29.4 7.1 47 406-452 113-159 (201)
175 2ggz_A Guanylyl cyclase-activa 41.4 69 0.0024 27.6 6.9 63 404-466 92-163 (211)
176 3ce7_A Specific mitochodrial a 41.3 2.1 7.1E-05 35.8 -2.6 27 448-474 51-77 (107)
177 1alv_A Calpain, S-camld; calci 41.2 80 0.0028 25.9 7.0 27 440-466 79-105 (173)
178 2znd_A Programmed cell death p 41.0 50 0.0017 27.0 5.7 27 440-466 76-102 (172)
179 3pxi_A Negative regulator of g 40.8 71 0.0024 33.9 8.2 49 402-450 325-388 (758)
180 4b4t_J 26S protease regulatory 40.7 30 0.001 35.6 5.2 63 405-467 322-389 (405)
181 3i5g_C Myosin catalytic light 40.5 40 0.0014 28.6 5.2 32 396-429 96-127 (159)
182 1toa_A Tromp-1, protein (perip 40.4 13 0.00045 36.1 2.4 78 397-474 136-220 (313)
183 2lmt_A Calmodulin-related prot 40.1 67 0.0023 26.1 6.3 71 395-466 20-111 (148)
184 1uw4_B UPF2, regulator of nons 39.8 23 0.00078 34.5 4.0 62 403-467 20-93 (248)
185 3akb_A Putative calcium bindin 39.7 61 0.0021 25.7 5.9 61 407-469 100-163 (166)
186 2kn2_A Calmodulin; S MAPK phos 39.5 66 0.0023 23.8 5.8 19 396-414 20-38 (92)
187 2ava_A ACP I, acyl carrier pro 39.4 5.9 0.0002 30.1 -0.2 26 449-474 33-58 (82)
188 2pmy_A RAS and EF-hand domain- 39.3 45 0.0015 25.3 4.9 62 404-467 26-90 (91)
189 1q80_A SCP, sarcoplasmic calci 39.2 41 0.0014 27.1 4.9 30 438-467 94-123 (174)
190 3u0k_A Rcamp; fluorescent prot 38.7 78 0.0027 33.3 8.0 36 395-431 312-347 (440)
191 2iie_A Integration HOST factor 38.7 46 0.0016 31.0 5.7 20 462-481 80-99 (204)
192 2ehs_A ACP, acyl carrier prote 38.2 5 0.00017 29.6 -0.7 25 449-473 30-54 (77)
193 2kgr_A Intersectin-1; structur 38.0 59 0.002 26.4 5.7 47 444-490 54-105 (111)
194 2obh_A Centrin-2; DNA repair c 37.9 1.1E+02 0.0038 24.4 7.3 29 438-466 79-107 (143)
195 3i5g_B Myosin regulatory light 37.9 95 0.0032 26.0 7.1 75 395-471 26-117 (153)
196 1f80_D Acyl carrier protein; t 37.7 4.2 0.00014 30.8 -1.2 25 450-474 37-61 (81)
197 3ejb_A Acyl carrier protein; p 37.7 6.2 0.00021 32.1 -0.3 27 448-474 50-76 (97)
198 1l0i_A Acyl carrier protein; a 37.6 5.8 0.0002 29.7 -0.4 26 449-474 32-57 (78)
199 1qv0_A Obelin, OBL; photoprote 37.6 50 0.0017 27.2 5.3 24 445-468 156-179 (195)
200 2kz2_A Calmodulin, CAM; TR2C, 37.6 49 0.0017 25.5 4.9 63 403-465 27-92 (94)
201 1iqp_A RFCS; clamp loader, ext 37.2 42 0.0014 30.3 5.1 57 402-460 169-227 (327)
202 3hh8_A Metal ABC transporter s 37.1 16 0.00055 35.2 2.4 77 398-474 123-206 (294)
203 2qac_A Myosin A tail domain in 37.1 86 0.0029 24.7 6.4 31 396-428 25-57 (146)
204 2bl0_B Myosin regulatory light 36.9 1.3E+02 0.0045 23.2 7.3 70 395-466 15-104 (145)
205 2kgr_A Intersectin-1; structur 36.7 28 0.00096 28.3 3.5 18 395-412 24-41 (111)
206 3sjs_A URE3-BP sequence specif 36.7 47 0.0016 29.3 5.2 31 440-471 119-149 (220)
207 2l2e_A Calcium-binding protein 36.6 81 0.0028 26.0 6.4 14 451-464 76-89 (190)
208 3cjh_B Mitochondrial import in 36.5 1.3E+02 0.0044 23.2 7.0 48 402-449 5-63 (64)
209 2lvv_A Flagellar calcium-bindi 36.4 36 0.0012 30.0 4.4 28 440-467 135-162 (226)
210 4ds7_A Calmodulin, CAM; protei 36.1 1.2E+02 0.0042 23.3 7.1 69 396-466 22-112 (147)
211 3d8b_A Fidgetin-like protein 1 35.5 30 0.001 33.3 4.0 45 403-447 252-298 (357)
212 2xyk_A 2-ON-2 hemoglobin; oxyg 35.4 52 0.0018 28.1 5.1 76 425-506 15-104 (133)
213 1s1e_A KV channel interacting 35.3 1E+02 0.0035 27.1 7.2 30 439-468 126-155 (224)
214 2kr5_A PKS, aflatoxin biosynth 35.3 13 0.00045 28.4 1.2 24 451-474 41-64 (89)
215 1k2h_A S100A1, S-100 protein, 35.2 1.1E+02 0.0039 22.5 6.5 13 401-413 27-39 (93)
216 1ggw_A Protein (CDC4P); light 35.2 54 0.0019 25.6 4.9 62 404-466 75-139 (140)
217 1avs_A Troponin C; muscle cont 35.1 82 0.0028 23.4 5.7 20 449-468 67-86 (90)
218 1qjt_A EH1, epidermal growth f 35.1 75 0.0025 25.3 5.7 20 395-414 21-40 (99)
219 2bjv_A PSP operon transcriptio 35.1 46 0.0016 29.9 5.0 39 419-460 208-250 (265)
220 2afd_A Protein ASL1650; twiste 34.9 16 0.00056 27.4 1.7 25 450-474 43-67 (88)
221 2kw2_A Specialized acyl carrie 34.9 5.7 0.0002 32.3 -0.9 25 450-474 33-57 (101)
222 1ij5_A Plasmodial specific LAV 34.9 95 0.0033 29.7 7.4 74 395-471 198-286 (323)
223 3n1e_A Vacuolar protein sortin 34.2 62 0.0021 29.2 5.6 59 421-481 74-135 (141)
224 2ovk_B RLC, myosin regulatory 34.1 97 0.0033 24.6 6.3 22 395-416 26-47 (153)
225 1m45_A MLC1P, myosin light cha 34.1 70 0.0024 25.1 5.4 21 395-415 14-34 (148)
226 1dtl_A Cardiac troponin C; hel 34.1 1.2E+02 0.0042 23.9 6.9 20 396-415 29-49 (161)
227 1msk_A Cobalamin-dependent met 34.0 81 0.0028 31.9 7.0 68 406-477 172-245 (331)
228 3h4s_E KCBP interacting Ca2+-b 33.9 1E+02 0.0034 25.1 6.4 18 397-414 52-69 (135)
229 1jr3_D DNA polymerase III, del 33.9 25 0.00087 33.0 3.2 63 402-467 142-209 (343)
230 2lki_A Putative uncharacterize 33.9 3.8 0.00013 34.2 -2.1 29 446-474 52-81 (105)
231 3fes_A ATP-dependent CLP endop 33.8 35 0.0012 28.9 3.7 32 436-467 86-117 (145)
232 3nso_A Protein S100-A3; EF-han 33.7 1.5E+02 0.0052 24.2 7.5 42 400-441 27-81 (101)
233 1fi6_A EH domain protein REPS1 33.5 1E+02 0.0035 23.8 6.1 19 396-414 20-38 (92)
234 1o17_A Anthranilate PRT, anthr 33.5 33 0.0011 34.3 4.1 75 407-481 3-86 (345)
235 3ujp_A Mn transporter subunit; 33.5 25 0.00086 34.3 3.2 76 398-473 130-212 (307)
236 1zbr_A AAQ65385, conserved hyp 33.4 19 0.00066 36.4 2.4 70 439-509 159-250 (349)
237 1c07_A Protein (epidermal grow 33.3 71 0.0024 24.9 5.2 17 444-460 50-66 (95)
238 3hwr_A 2-dehydropantoate 2-red 33.3 27 0.00094 33.1 3.3 20 434-453 226-245 (318)
239 1zpy_A Hypothetical protein NE 33.2 15 0.00051 31.6 1.4 44 406-449 23-74 (95)
240 1qx2_A Vitamin D-dependent cal 33.1 28 0.00094 24.7 2.6 14 401-414 23-36 (76)
241 1xvl_A Mn transporter, MNTC pr 32.9 18 0.00061 35.4 2.0 78 397-474 143-227 (321)
242 1sxj_A Activator 1 95 kDa subu 32.6 30 0.001 35.1 3.7 62 402-465 209-272 (516)
243 3zyq_A Hepatocyte growth facto 32.6 61 0.0021 30.3 5.5 62 401-475 84-146 (226)
244 3e46_A Ubiquitin-conjugating e 32.4 1E+02 0.0034 29.8 7.1 48 406-453 165-212 (253)
245 4b4t_L 26S protease subunit RP 32.3 39 0.0013 34.8 4.5 42 426-467 377-422 (437)
246 2cnr_A FAS, ACP, acyl carrier 32.3 8.5 0.00029 28.9 -0.3 26 449-474 36-61 (82)
247 2qup_A BH1478 protein; structu 32.0 33 0.0011 30.6 3.5 50 404-453 40-94 (145)
248 3cf0_A Transitional endoplasmi 32.0 16 0.00054 34.2 1.4 49 403-451 187-240 (301)
249 2ksc_A Cyanoglobin; hemeprotei 31.9 48 0.0016 27.6 4.2 79 425-506 10-97 (123)
250 1af8_A Actinorhodin polyketide 31.9 27 0.00092 26.7 2.5 25 450-474 38-62 (86)
251 1y1x_A Leishmania major homolo 31.8 1.9E+02 0.0064 24.4 8.0 69 396-466 38-121 (191)
252 3qbr_A SJA, sjchgc06286 protei 31.5 85 0.0029 29.5 6.2 49 407-455 82-141 (179)
253 2f33_A Calbindin; EF-hand, Ca2 31.5 88 0.003 27.0 6.0 20 395-414 113-132 (263)
254 1bu3_A Calcium-binding protein 31.5 66 0.0023 24.5 4.7 17 445-461 88-104 (109)
255 3b9p_A CG5977-PA, isoform A; A 31.5 87 0.003 28.4 6.2 64 403-466 190-271 (297)
256 1juo_A Sorcin; calcium-binding 31.3 1.4E+02 0.0049 25.1 7.2 20 395-414 113-132 (198)
257 3htm_A Speckle-type POZ protei 31.3 73 0.0025 26.7 5.3 67 402-469 81-148 (172)
258 1j8m_F SRP54, signal recogniti 31.2 54 0.0019 31.4 5.0 39 404-442 4-56 (297)
259 2ktg_A Calmodulin, putative; e 31.1 84 0.0029 22.8 5.0 19 450-468 62-80 (85)
260 4h5l_A Nucleoprotein; nucleoca 31.1 86 0.003 31.0 6.4 84 397-482 13-109 (253)
261 1q80_A SCP, sarcoplasmic calci 31.1 35 0.0012 27.6 3.2 21 395-415 16-36 (174)
262 1jba_A GCAP-2, protein (guanyl 31.1 1.2E+02 0.0042 25.5 6.7 25 443-467 100-124 (204)
263 3fh2_A Probable ATP-dependent 31.0 41 0.0014 28.4 3.7 32 436-467 86-117 (146)
264 3q5i_A Protein kinase; CDPK, m 30.9 85 0.0029 31.0 6.5 28 439-466 436-463 (504)
265 3j04_B Myosin regulatory light 30.8 1.4E+02 0.0049 23.1 6.7 76 395-473 17-110 (143)
266 2z4s_A Chromosomal replication 30.6 59 0.002 32.5 5.4 65 403-468 264-333 (440)
267 2f33_A Calbindin; EF-hand, Ca2 30.3 84 0.0029 27.1 5.7 19 396-414 27-45 (263)
268 4eto_A Protein S100-A4; calciu 30.0 1.4E+02 0.0049 23.6 6.6 43 400-442 27-82 (93)
269 1s6i_A CDPK, calcium-dependent 30.0 70 0.0024 27.3 5.1 33 394-428 19-52 (188)
270 2lhi_A Calmodulin, serine/thre 29.9 1.1E+02 0.0037 26.2 6.3 71 395-466 21-112 (176)
271 1xwi_A SKD1 protein; VPS4B, AA 29.6 36 0.0012 32.4 3.5 49 403-451 180-234 (322)
272 2h2k_A Protein S100-A13; calci 29.4 1.1E+02 0.0036 25.2 5.9 45 400-444 39-93 (106)
273 4b4t_M 26S protease regulatory 29.4 53 0.0018 33.8 4.9 42 426-467 377-422 (434)
274 1jr3_A DNA polymerase III subu 29.4 45 0.0015 30.8 4.0 60 401-464 177-241 (373)
275 2xxa_A Signal recognition part 29.3 80 0.0027 32.1 6.1 40 404-443 6-59 (433)
276 1ls1_A Signal recognition part 29.3 1.7E+02 0.0057 27.8 8.0 18 405-422 7-24 (295)
277 1r4w_A Glutathione S-transfera 29.1 63 0.0021 28.8 4.8 44 403-450 134-178 (226)
278 1nkt_A Preprotein translocase 29.0 24 0.00082 40.2 2.5 48 423-473 697-744 (922)
279 2kua_A BCL-2-like protein 10; 29.0 46 0.0016 30.4 3.9 29 421-449 69-108 (170)
280 2vof_A BCL-2-related protein A 28.9 22 0.00075 31.7 1.7 29 422-450 70-108 (157)
281 1bjf_A Neurocalcin delta; calc 28.9 1.4E+02 0.0046 24.6 6.5 30 439-468 100-129 (193)
282 2gkm_A TRHBN, hemoglobin-like 28.9 1.1E+02 0.0038 25.9 6.1 79 425-506 22-105 (136)
283 1pb6_A Hypothetical transcript 28.7 57 0.002 26.9 4.2 13 424-436 126-138 (212)
284 1wlz_A DJBP, CAP-binding prote 28.7 58 0.002 24.8 3.9 63 405-467 24-89 (105)
285 1xkn_A Putative peptidyl-argin 28.7 24 0.00083 35.7 2.2 70 439-509 169-259 (355)
286 2l3v_A ACP, acyl carrier prote 28.6 7.7 0.00026 29.0 -1.1 25 450-474 34-58 (79)
287 1eh2_A EPS15; calcium binding, 28.6 1.7E+02 0.0059 23.9 7.0 38 443-480 53-94 (106)
288 2vxy_A FTSZ, cell division pro 28.6 34 0.0012 35.0 3.3 73 404-477 148-230 (382)
289 2ovk_C Myosin catalytic light 28.5 87 0.003 25.0 5.1 17 450-466 135-151 (159)
290 2o2k_A Methionine synthase; C- 28.4 1.1E+02 0.0039 31.2 7.0 68 406-477 183-256 (355)
291 2jer_A Agmatine deiminase; hyd 28.4 26 0.00088 36.0 2.4 70 439-509 170-260 (389)
292 1klp_A ACP, ACPM, meromycolate 28.3 7.8 0.00027 32.1 -1.2 25 450-474 37-61 (115)
293 2ao9_A Phage protein; structur 28.3 1.3E+02 0.0043 27.5 6.7 44 421-467 72-119 (155)
294 3tac_B Liprin-alpha-2; transfe 28.2 1.2E+02 0.0041 31.1 7.1 76 404-507 19-106 (334)
295 2jq6_A EH domain-containing pr 28.1 1.2E+02 0.0041 26.6 6.3 76 403-480 49-130 (139)
296 2kax_A Protein S100-A5; EF-han 28.0 1.2E+02 0.0042 23.3 5.7 35 397-431 23-59 (92)
297 2hpk_A Photoprotein berovin; s 27.9 83 0.0028 26.7 5.1 27 440-466 130-156 (208)
298 2zc2_A DNAD-like replication p 27.8 45 0.0015 25.9 3.2 34 418-451 16-51 (78)
299 3cs1_A Flagellar calcium-bindi 27.8 81 0.0028 27.5 5.2 34 395-429 58-92 (219)
300 2pwq_A Ubiquitin conjugating e 27.8 68 0.0023 30.2 5.0 48 406-453 128-175 (216)
301 2kz2_A Calmodulin, CAM; TR2C, 27.7 80 0.0027 24.3 4.6 35 395-431 39-74 (94)
302 1exr_A Calmodulin; high resolu 27.6 1.3E+02 0.0043 24.0 5.9 18 397-414 95-112 (148)
303 3rpp_A Glutathione S-transfera 27.5 67 0.0023 29.3 4.8 52 398-453 129-181 (234)
304 3i83_A 2-dehydropantoate 2-red 27.2 25 0.00084 33.3 1.9 32 433-465 215-246 (320)
305 1sxj_C Activator 1 40 kDa subu 27.1 67 0.0023 30.2 4.8 62 402-463 169-235 (340)
306 3ldz_A STAM-1, signal transduc 27.1 95 0.0033 27.0 5.4 20 455-474 99-118 (140)
307 2z15_A Protein TOB1; human TOB 27.0 11 0.00038 33.6 -0.5 35 434-474 69-104 (130)
308 3khe_A Calmodulin-like domain 27.0 73 0.0025 26.1 4.5 67 403-471 121-190 (191)
309 3ox6_A Calcium-binding protein 26.9 91 0.0031 24.2 4.9 62 404-465 87-152 (153)
310 2jjz_A Ionized calcium-binding 26.8 1.6E+02 0.0055 24.3 6.6 20 395-414 60-79 (150)
311 2p61_A Hypothetical protein TM 26.8 42 0.0014 30.7 3.2 42 405-446 51-97 (162)
312 1tiz_A Calmodulin-related prot 26.8 33 0.0011 23.6 2.0 21 395-415 11-31 (67)
313 2qrw_A Hemoglobin-like protein 26.6 1.1E+02 0.0036 25.6 5.5 76 425-503 12-96 (128)
314 1nq4_A Oxytetracycline polyket 26.6 45 0.0015 26.7 3.1 24 451-474 38-61 (95)
315 2mys_B Myosin; muscle protein, 26.4 94 0.0032 25.0 5.0 71 395-466 35-123 (166)
316 3n5w_A Nitric oxide synthase; 26.3 84 0.0029 33.2 5.7 18 489-506 78-95 (422)
317 1c52_A Cytochrome-C552; electr 25.8 27 0.00092 28.9 1.6 45 453-497 76-127 (131)
318 2kci_A Putative acyl carrier p 25.6 27 0.00092 28.4 1.6 31 444-474 26-56 (87)
319 2ffh_A Protein (FFH); SRP54, s 25.6 1.1E+02 0.0038 31.3 6.4 40 404-443 6-59 (425)
320 2y5i_A S100Z, S100 calcium bin 25.5 1.7E+02 0.0059 23.2 6.3 46 397-442 23-82 (99)
321 2f05_A Paired amphipathic heli 25.5 65 0.0022 27.7 4.0 73 407-480 10-96 (105)
322 3jvo_A GP6; 13-membered ring, 25.4 86 0.003 26.5 4.7 40 400-442 7-46 (108)
323 1wdc_B Scallop myosin; calcium 25.4 75 0.0026 25.4 4.2 44 395-440 97-149 (156)
324 2mys_B Myosin; muscle protein, 25.3 99 0.0034 24.9 4.9 23 445-467 138-160 (166)
325 3jux_A Protein translocase sub 25.3 25 0.00085 39.7 1.7 39 423-467 667-705 (822)
326 2xb0_X Chromo domain-containin 25.2 84 0.0029 30.9 5.3 43 400-442 4-59 (270)
327 3dd4_A KV channel-interacting 25.2 1.8E+02 0.0061 25.6 6.9 34 435-468 135-168 (229)
328 3aq9_A Group 1 truncated hemog 25.2 1.1E+02 0.0039 25.1 5.3 79 425-506 14-97 (121)
329 1dvp_A HRS, hepatocyte growth 25.1 1.5E+02 0.0052 27.1 6.7 36 401-438 81-116 (220)
330 2ccm_A Calexcitin; EF hand, ca 24.9 2.5E+02 0.0087 23.0 7.5 30 437-466 108-137 (191)
331 2vaw_A FTSZ, cell division pro 24.8 51 0.0018 33.8 3.8 72 405-477 149-230 (394)
332 3fay_A P195, RAS GTPase-activa 24.8 1.3E+02 0.0046 30.0 6.7 19 488-506 259-277 (387)
333 3b0c_T CENP-T, centromere prot 24.7 1.2E+02 0.0041 26.0 5.5 45 423-467 32-88 (111)
334 1squ_A CHEX protein; alpha-bet 24.5 1.6E+02 0.0053 24.8 6.2 46 398-443 56-104 (155)
335 2bl0_B Myosin regulatory light 24.5 56 0.0019 25.4 3.2 24 445-468 119-142 (145)
336 3k21_A PFCDPK3, calcium-depend 24.3 1.4E+02 0.0048 25.4 5.9 15 450-464 175-189 (191)
337 2amw_A Hypothetical protein NE 24.2 8.8 0.0003 29.5 -1.5 26 449-474 33-59 (83)
338 2hpk_A Photoprotein berovin; s 24.2 1.2E+02 0.0042 25.6 5.5 22 449-470 173-194 (208)
339 2vzb_A Putative bacterioferrit 24.1 1.6E+02 0.0056 24.6 6.2 40 406-448 120-159 (170)
340 3i5g_B Myosin regulatory light 24.0 53 0.0018 27.6 3.2 34 395-430 95-128 (153)
341 2qac_A Myosin A tail domain in 24.0 1.3E+02 0.0045 23.6 5.3 20 395-414 94-113 (146)
342 3bhw_A Uncharacterized protein 23.9 1.8E+02 0.0063 26.9 7.1 61 404-467 57-132 (209)
343 4eoz_A Speckle-type POZ protei 23.9 50 0.0017 26.9 2.9 48 402-449 72-120 (145)
344 1k2h_A S100A1, S-100 protein, 23.9 1.3E+02 0.0043 22.3 5.0 62 404-465 8-79 (93)
345 1wzv_A Ubiquitin-conjugating e 23.9 94 0.0032 27.1 4.8 45 406-450 109-153 (155)
346 3iv7_A Alcohol dehydrogenase I 23.8 33 0.0011 34.1 2.2 18 451-468 333-350 (364)
347 1ny5_A Transcriptional regulat 23.7 1.2E+02 0.0043 29.6 6.2 45 419-466 338-386 (387)
348 1uhk_A Aequorin 2, aequorin; E 23.6 1.1E+02 0.0037 25.0 4.9 25 444-468 151-175 (191)
349 1j55_A S-100P protein; metal b 23.6 1.4E+02 0.0047 23.4 5.3 42 400-441 26-80 (95)
350 1vku_A Acyl carrier protein; T 23.5 8.9 0.0003 31.7 -1.7 25 450-474 46-70 (100)
351 1fpw_A Yeast frequenin, calciu 23.5 1.9E+02 0.0067 23.6 6.5 17 450-466 111-127 (190)
352 1k9u_A Polcalcin PHL P 7; poll 23.5 78 0.0027 22.7 3.6 63 404-467 2-67 (78)
353 3g2s_A C-terminal fragment of 23.4 92 0.0032 27.7 4.7 18 456-473 112-129 (149)
354 2ewo_A Putative agmatine deimi 23.4 37 0.0013 34.6 2.5 68 439-507 174-262 (377)
355 2bec_A Calcineurin B homologou 23.4 92 0.0032 26.2 4.6 64 404-467 113-184 (202)
356 3nnr_A Transcriptional regulat 23.4 15 0.0005 31.4 -0.4 19 421-439 109-127 (228)
357 3qrx_A Centrin; calcium-bindin 23.3 1E+02 0.0036 24.7 4.7 18 449-466 148-165 (169)
358 2ck3_A ATP synthase subunit al 23.2 46 0.0016 35.4 3.2 31 408-438 477-507 (510)
359 1s6c_A KV4 potassium channel-i 23.1 1.7E+02 0.0059 23.9 6.0 33 436-468 90-122 (183)
360 2bkm_A Truncated hemoglobin fr 23.0 1E+02 0.0035 25.7 4.7 78 425-506 13-99 (128)
361 1k8u_A S100A6, calcyclin, CACY 23.0 1.4E+02 0.0047 21.8 4.9 17 397-413 23-40 (90)
362 1c7v_A CAVP, calcium vector pr 22.9 47 0.0016 24.1 2.3 20 395-414 18-37 (81)
363 1ojl_A Transcriptional regulat 22.9 92 0.0032 29.4 4.9 44 418-464 202-249 (304)
364 3rm1_A Protein S100-B; alpha-h 22.8 2.6E+02 0.0089 21.4 7.1 43 399-441 25-80 (92)
365 3hn2_A 2-dehydropantoate 2-red 22.7 30 0.001 32.5 1.5 34 432-466 213-248 (312)
366 3e9v_A Protein BTG2; B-cell tr 22.7 17 0.00057 32.1 -0.2 34 435-474 66-100 (120)
367 2ggz_A Guanylyl cyclase-activa 22.6 83 0.0028 27.1 4.2 31 438-468 93-123 (211)
368 3hqi_A Speckle-type POZ protei 22.6 1.4E+02 0.0047 27.8 6.0 68 402-470 221-289 (312)
369 2opo_A Polcalcin CHE A 3; calc 22.4 74 0.0025 23.2 3.4 20 396-415 22-41 (86)
370 1wer_A P120GAP; GTPase activat 22.4 2.8E+02 0.0095 27.0 8.3 40 404-443 98-150 (334)
371 4fgs_A Probable dehydrogenase 22.4 19 0.00066 34.5 0.1 72 396-468 51-135 (273)
372 2joj_A Centrin protein; N-term 22.4 1E+02 0.0035 21.8 4.0 21 447-467 52-72 (77)
373 4aq3_A Apoptosis regulator BCL 22.3 93 0.0032 28.3 4.6 44 404-450 71-123 (169)
374 3zwh_A Protein S100-A4; Ca-bin 22.3 2.5E+02 0.0085 22.9 6.8 42 400-441 30-84 (104)
375 2y9m_A Ubiquitin-conjugating e 22.3 81 0.0028 28.3 4.2 43 406-448 125-171 (172)
376 3ojo_A CAP5O; rossmann fold, c 22.1 1.2E+02 0.0041 31.1 5.9 75 404-478 188-268 (431)
377 1iq3_A Ralbp1-interacting prot 21.9 39 0.0013 27.7 1.9 13 404-416 21-33 (110)
378 1ofu_A FTSZ, cell division pro 21.8 53 0.0018 32.4 3.2 72 405-477 149-230 (320)
379 4dxe_H ACP, acyl carrier prote 21.8 38 0.0013 27.9 1.8 27 448-474 54-80 (101)
380 1avs_A Troponin C; muscle cont 21.7 69 0.0024 23.8 3.1 15 400-414 35-49 (90)
381 2bec_A Calcineurin B homologou 21.7 1.7E+02 0.0057 24.6 5.8 28 440-467 116-143 (202)
382 2fu2_A Hypothetical protein SP 21.7 52 0.0018 27.6 2.7 35 404-438 4-40 (102)
383 3sg6_A Gcamp2, myosin light ch 21.6 2E+02 0.0069 29.8 7.5 16 399-414 326-341 (450)
384 1xk4_A Calgranulin A; S100 fam 21.6 78 0.0027 24.1 3.4 14 401-414 28-42 (93)
385 5pal_A Parvalbumin; calcium-bi 21.4 96 0.0033 23.6 3.9 15 450-464 92-106 (109)
386 2ig3_A Group III truncated hae 21.4 51 0.0018 28.4 2.6 80 425-506 8-97 (127)
387 3k6c_A Uncharacterized protein 21.4 33 0.0011 29.6 1.4 32 417-448 42-73 (95)
388 1alv_A Calpain, S-camld; calci 21.3 2.4E+02 0.0083 23.0 6.6 14 450-463 124-137 (173)
389 3bow_A Calpain-2 catalytic sub 21.2 2E+02 0.0067 30.9 7.5 74 397-471 543-637 (714)
390 2joj_A Centrin protein; N-term 21.1 62 0.0021 23.0 2.6 18 397-414 19-36 (77)
391 1xk4_C Calgranulin B; S100 fam 21.1 2.2E+02 0.0077 22.8 6.3 19 397-415 25-45 (113)
392 1th8_A Anti-sigma F factor; SP 21.1 79 0.0027 25.5 3.5 39 405-443 17-55 (145)
393 1m45_A MLC1P, myosin light cha 21.1 68 0.0023 25.2 3.1 18 397-414 95-112 (148)
394 1tiz_A Calmodulin-related prot 21.1 1.1E+02 0.0038 20.8 3.9 61 406-466 2-65 (67)
395 3pef_A 6-phosphogluconate dehy 21.0 78 0.0027 29.1 3.9 57 404-460 144-205 (287)
396 1rq2_A Cell division protein F 20.9 71 0.0024 32.7 3.9 72 404-477 148-230 (382)
397 2lse_A Four helix bundle prote 26.3 21 0.00071 30.5 0.0 76 428-506 8-84 (101)
398 2r9v_A ATP synthase subunit al 20.8 45 0.0015 35.6 2.5 31 408-438 482-512 (515)
399 2ccm_A Calexcitin; EF hand, ca 20.8 2.3E+02 0.0078 23.3 6.4 20 395-414 23-42 (191)
400 3e7m_A Nitric oxide synthase, 20.8 99 0.0034 32.7 5.0 19 489-507 88-106 (433)
401 1or5_A Acyl carrier protein; A 20.7 35 0.0012 25.8 1.3 24 451-474 37-60 (83)
402 1x5b_A Signal transducing adap 20.7 2.4E+02 0.0081 25.2 6.9 63 403-474 50-129 (163)
403 1khy_A CLPB protein; alpha hel 20.7 97 0.0033 25.6 4.1 32 436-467 10-41 (148)
404 1z2u_A Ubiquitin-conjugating e 20.6 1.2E+02 0.0042 26.2 4.9 42 407-448 109-150 (150)
405 3rh3_A Uncharacterized DUF3829 20.6 65 0.0022 32.1 3.4 64 407-471 196-262 (264)
406 3bow_A Calpain-2 catalytic sub 20.5 95 0.0033 33.3 5.0 16 450-465 652-667 (714)
407 3m6a_A ATP-dependent protease 20.5 63 0.0021 33.4 3.5 50 417-466 280-340 (543)
408 1wlz_A DJBP, CAP-binding prote 20.5 1E+02 0.0035 23.4 3.9 49 421-471 8-56 (105)
409 3bul_A Methionine synthase; tr 20.4 1.8E+02 0.0062 31.3 7.0 68 406-477 420-493 (579)
410 2sas_A Sarcoplasmic calcium-bi 20.3 1.9E+02 0.0066 23.2 5.7 68 395-466 19-88 (185)
411 3hd5_A Thiol:disulfide interch 20.3 1.6E+02 0.0053 25.2 5.4 47 398-450 101-147 (195)
412 1yx7_A Calsensin, LAN3-6 antig 20.3 63 0.0021 23.4 2.5 21 395-415 17-37 (83)
413 1k6k_A ATP-dependent CLP prote 20.2 85 0.0029 25.9 3.6 32 436-467 84-115 (143)
414 1uhk_A Aequorin 2, aequorin; E 20.1 1.3E+02 0.0044 24.6 4.7 25 442-466 113-137 (191)
415 2rcc_A Ribonucleoside-diphosph 20.1 1.4E+02 0.0047 29.4 5.7 71 405-478 229-299 (346)
416 3mwu_A Calmodulin-domain prote 20.1 1.4E+02 0.0046 29.3 5.6 13 396-408 342-354 (486)
No 1
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=100.00 E-value=2.8e-33 Score=230.13 Aligned_cols=75 Identities=53% Similarity=0.960 Sum_probs=73.1
Q ss_pred CCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCccc
Q 009343 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTL 472 (537)
Q Consensus 398 ~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~I 472 (537)
.++||+|++|++||++|||++.||+||||+|++|||||||+|+++||+||||||+++||+|||+|||||+|||+|
T Consensus 2 s~~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~wni~i 76 (76)
T 1h3o_B 2 SHMVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWI 76 (76)
T ss_dssp -CCSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHTCCCC
T ss_pred CcccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhcCCcC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.99 E-value=7.1e-10 Score=91.20 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=72.8
Q ss_pred cCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCC
Q 009343 397 FGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFS 476 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfs 476 (537)
+..+.|+|..+..|++..+. ..|.+|+.|.|.++.++|+++|+..|+.+|+|.|-.||+..||.+.|+|. +..+.||+
T Consensus 6 ~~~~~ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~-g~~lYgf~ 83 (84)
T 2hue_C 6 DNIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ-GRTLYGFG 83 (84)
T ss_dssp GGCCSSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT-CEEEESCC
T ss_pred ccCCCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc-CCCCCCCC
Confidence 45677999999999999854 88999999999999999999999999999999999999999999999998 78888986
Q ss_pred c
Q 009343 477 G 477 (537)
Q Consensus 477 s 477 (537)
+
T Consensus 84 ~ 84 (84)
T 2hue_C 84 G 84 (84)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.94 E-value=1.4e-09 Score=92.82 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=72.5
Q ss_pred CcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCC
Q 009343 396 EFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGF 475 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGf 475 (537)
.+..+.|+|..|..|++.+. -..|.+|+.|.|.+++++|+++|+..|+.+|+|-+-.||+..||.+.|+|. +..+.||
T Consensus 23 r~~i~~ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~-g~~lYGf 100 (102)
T 1id3_B 23 RDNIQGITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ-GRTLYGF 100 (102)
T ss_dssp -CCGGGSCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT-TCCEESS
T ss_pred HhccCCCCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc-CCCCCCC
Confidence 35566799999999999985 488999999999999999999999999999999999999999999999998 6788898
Q ss_pred C
Q 009343 476 S 476 (537)
Q Consensus 476 s 476 (537)
.
T Consensus 101 ~ 101 (102)
T 1id3_B 101 G 101 (102)
T ss_dssp C
T ss_pred C
Confidence 6
No 4
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.89 E-value=3e-09 Score=90.40 Aligned_cols=80 Identities=24% Similarity=0.311 Sum_probs=72.9
Q ss_pred CcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCC
Q 009343 396 EFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGF 475 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGf 475 (537)
.+..+.|++..|..|++.... ..|.+|+.|.|.++.++|+++|+..|..+|+|-|-.||+.+||.+.|++. +..+.||
T Consensus 24 r~~~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~-g~~lYGf 101 (103)
T 1tzy_D 24 RDNIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ-GRTLYGF 101 (103)
T ss_dssp CCGGGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT-TCEEESC
T ss_pred hhhcccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc-CCCCcCC
Confidence 344556999999999999876 79999999999999999999999999999999999999999999999998 6778898
Q ss_pred Cc
Q 009343 476 SG 477 (537)
Q Consensus 476 ss 477 (537)
.+
T Consensus 102 ~~ 103 (103)
T 1tzy_D 102 GG 103 (103)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.85 E-value=4e-09 Score=89.75 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=63.8
Q ss_pred cCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCC
Q 009343 397 FGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFS 476 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfs 476 (537)
+..+.|++..|..|++.... ..|.+|+.|.|.++.++|+++|+..|..+|+|-|-.||+.+||.+.|++. +..+.||.
T Consensus 25 ~~~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~-g~~lYGf~ 102 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ-GRTLYGFG 102 (103)
T ss_dssp -----CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH-C-------
T ss_pred hhhccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc-CCCCcCCC
Confidence 44555999999999999866 79999999999999999999999999999999999999999999999998 57788885
No 6
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.75 E-value=1.7e-08 Score=79.78 Aligned_cols=64 Identities=19% Similarity=0.368 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
.|+|..+..|++++ +..++++++.+.|.+++++|+++|+..|+.+|+|.|..||+.+||++.++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 58999999999998 46899999999999999999999999999999999999999999999986
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.64 E-value=6.7e-08 Score=75.63 Aligned_cols=65 Identities=26% Similarity=0.322 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
-|.|..+..||+++ +...+..|+.++|.+.+++||..+++.|..+|+|.|..||..+||++.+++
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 37899999999999 678999999999999999999999999999999999999999999999986
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.62 E-value=6.5e-08 Score=77.99 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=65.2
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
.+.|.+..+..+++++.|+..|..|+.++|.+.+++||+.|...|..+|+|.|..||..+||+..||.-+
T Consensus 2 ~~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp --CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999998754
No 9
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.62 E-value=6.3e-08 Score=83.78 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=63.3
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
...|+|..|..|+++. ...+|.+|+.+.|.+++++|+++|+..|+.+|+|.|..||+..||.+.|+|+-.+.
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~ 76 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVT 76 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSB
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcc
Confidence 4578999999999998 67899999999999999999999999999999999999999999999999985443
No 10
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.45 E-value=5.5e-07 Score=72.77 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=57.3
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 405 RSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 405 rKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
+.|..|++..+- +.++++|...|+|++.+|+.+|+..|..+|+|.|.++|++.||+|.++...
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 457788888754 799999999999999999999999999999999999999999999998753
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.39 E-value=9.7e-07 Score=73.16 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=63.6
Q ss_pred cCCccCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 397 FGNRILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+.+..|.+..+..||+++ .....+..|+.++|.+.+++||..++..|..+|+|.|..||..+||...|++
T Consensus 4 ~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 4 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp ---CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 456789999999999999 4468999999999999999999999999999999999999999999999983
No 12
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.39 E-value=7.9e-07 Score=81.30 Aligned_cols=73 Identities=11% Similarity=0.249 Sum_probs=68.3
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
.+.++..|++..+..|+|+. +..+|..|+.+.|.+++++|++.|+..|+.+|+|-|..||..+||++.|+++.
T Consensus 76 ~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~ 148 (154)
T 1f1e_A 76 EDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSM 148 (154)
T ss_dssp TTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred CccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcC
Confidence 34566789999999999998 77899999999999999999999999999999999999999999999999973
No 13
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=5.2e-07 Score=80.05 Aligned_cols=62 Identities=26% Similarity=0.405 Sum_probs=58.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCc
Q 009343 415 DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSG 477 (537)
Q Consensus 415 DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfss 477 (537)
.+-++|.+++.|.|.++.++|+++|+..|+.+|+|.|.+||.+.||.+.|+|. |..+-||++
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~-G~~lygf~~ 121 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ-GRTLYGFGG 121 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHT-TCGGGGCCC
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhC-CCcCCCCCC
Confidence 34578999999999999999999999999999999999999999999999996 779999984
No 14
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=3e-06 Score=82.21 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHhhC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCccc
Q 009343 401 ILTKRSIQELVNQID--------PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTL 472 (537)
Q Consensus 401 ILtKrKLqELVrqID--------P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~I 472 (537)
.=-++.|.|++. |+ +-+.|.+++.|.|.++.++|+++|+..|+.+|+|.+..||++.||.|.|+|. |..+
T Consensus 153 ~r~~~vLrD~i~-i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~-gr~l 230 (235)
T 2l5a_A 153 TKYTSVLRDIID-ISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ-GRTL 230 (235)
T ss_dssp STHHHHHHHHHH-HTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH-HHHH
T ss_pred hhHHHHHHHhhc-ccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc-CCcc
Confidence 344778888887 75 5679999999999999999999999999999999999999999999999997 5888
Q ss_pred CCCCc
Q 009343 473 PGFSG 477 (537)
Q Consensus 473 PGfss 477 (537)
.||++
T Consensus 231 YGf~~ 235 (235)
T 2l5a_A 231 YGFGG 235 (235)
T ss_dssp TTCCC
T ss_pred ccCCC
Confidence 89873
No 15
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.19 E-value=3.5e-06 Score=70.43 Aligned_cols=65 Identities=20% Similarity=0.147 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHhhC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 401 ILTKRSIQELVNQID------PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 401 ILtKrKLqELVrqID------P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
+|.|--++.|||+|. ...++..++.++|.+.+|+|+.++.+.+...|+|.|--||..|||+|...
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 678999999999997 46899999999999999999999999999999999999999999999754
No 16
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.18 E-value=4.2e-06 Score=78.26 Aligned_cols=72 Identities=14% Similarity=0.353 Sum_probs=66.5
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
.++....|.+..|..||+++-|+.+|.+|+.++|.+.+.+||.-|...|..+|+|.+..||..+||...|++
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 566778999999999999997789999999999999999999999999999999999999999999999994
No 17
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.15 E-value=2.6e-06 Score=78.54 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=62.5
Q ss_pred CcCCccCCHHHHHHHHHhhC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 396 EFGNRILTKRSIQELVNQID------PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqID------P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
.+.+-+|.|--++.||++|. ....+..++.++|.|.+|+|+.++.+.+..+|+|.|--||.+|||+|+..
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 46778999999999999996 35688999999999999999999999999999999999999999999753
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.15 E-value=5.3e-06 Score=68.61 Aligned_cols=66 Identities=23% Similarity=0.227 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 401 ILTKRSIQELVNQI----DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 401 ILtKrKLqELVrqI----DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+|.|--++.|||+| .....+..++.++|.+.+|+|+..+.+.+..+|+|.|.-||..|||+|...-
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 67899999999999 2468999999999999999999999999999999999999999999998743
No 19
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.12 E-value=3.6e-06 Score=76.37 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=63.2
Q ss_pred CcCCccCCHHHHHHHHHhhC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 396 EFGNRILTKRSIQELVNQID------PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqID------P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
.+.+-+|.|--++.||++|. ....+..++.++|.|.+|+|+.++.+.+..+|+|.|--||..|||+|+..
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 46778999999999999996 46899999999999999999999999999999999999999999999754
No 20
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.09 E-value=7.5e-06 Score=73.84 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=65.2
Q ss_pred CcCCccCCHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 396 EFGNRILTKRSIQELVNQI----DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqI----DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
.+.+-+|.|--++.||++| .....+..++.++|.|.+|+|+..+.+.+..+|+|.|--||..|||+|...-
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 3677899999999999999 2468999999999999999999999999999999999999999999998743
No 21
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.09 E-value=4.9e-06 Score=71.61 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=59.5
Q ss_pred CcCCccCCHHHHHHHHHhhCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 396 EFGNRILTKRSIQELVNQIDP-------SERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP-------~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
.+.+-+|.|--+..||++|.- ...+..++.++|.+.+|+|+..+.+.+..+|+|.|--||..|||+|...
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 456778999999999999962 5789999999999999999999999999999999999999999999863
No 22
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.02 E-value=4.7e-06 Score=72.44 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=54.0
Q ss_pred HHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 407 IQELVNQIDP--SERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 407 LqELVrqIDP--~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+..+++++.. +..+.++|...|.+++.+|+++|...+..+|||.|..||+..||.|.++|+
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 3445555533 578999999999999999999999999999999999999999999999996
No 23
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.98 E-value=3.1e-05 Score=62.98 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=61.9
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
.-+|++..+.++++.++- +.|.+|+.+.|.+-++..+..|+..|+++++|-|..+|...||.+.|+
T Consensus 4 ~s~lp~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 457899999999999855 799999999999999999999999999999999999999999999885
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=1.7e-05 Score=67.15 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=54.1
Q ss_pred HHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 408 QELVNQIDP--SERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 408 qELVrqIDP--~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
..++.++.. +..+++++...|.+++.+|+++|...+..+|||-|.+||+..||.|.++||=
T Consensus 19 ~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~ 81 (90)
T 3v9r_A 19 EERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQP 81 (90)
T ss_dssp HHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred HHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCh
Confidence 355666633 3679999999999999999999999999999999999999999999999973
No 25
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.90 E-value=2.6e-05 Score=71.32 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
.|.+-.+..|+|+.=+.+++..|+.|.|.+++.+|+..|+..|..+|+|.|..||..+||...|.+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 478999999999985559999999999999999999999999999999999999999999999976
No 26
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.88 E-value=2.8e-05 Score=68.75 Aligned_cols=71 Identities=24% Similarity=0.288 Sum_probs=62.2
Q ss_pred cCCccCCHHHHHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 397 FGNRILTKRSIQELVNQIDP-SERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqIDP-~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.....|.+..|..|+++++| ...|..|+.++|.+.++.||..|+..|..+|+|.+..||..+||...|++.
T Consensus 5 ~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 5 IEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp ------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 45678999999999998776 679999999999999999999999999999999999999999999999985
No 27
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.82 E-value=2.2e-05 Score=69.17 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=52.8
Q ss_pred HHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 409 ELVNQID--PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 409 ELVrqID--P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
.+|++.. -+..+++++...|.+++++|+++|...+..+|||-|.+||+..||.|.++|+=
T Consensus 35 rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~ 96 (113)
T 4dra_A 35 CLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSN 96 (113)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCH
Confidence 3444442 25679999999999999999999999999999999999999999999999973
No 28
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.68 E-value=9.7e-05 Score=62.03 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
.+..+..|.-.++..+++.-.....+..|+-.+|.+.++.||..+++.|+..|++.|..+|..+||..++++...+.
T Consensus 13 ~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~ 89 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 89 (97)
T ss_dssp -------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGG
T ss_pred CCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHH
Confidence 45566778999999999975444789999999999999999999999999999999999999999999999876655
No 29
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.60 E-value=6.8e-05 Score=68.21 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccC
Q 009343 416 PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWN 469 (537)
Q Consensus 416 P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWN 469 (537)
.+..+.+++...|.+++++|+++|...+..+|||-|..||+..||.|.++|+=.
T Consensus 36 ~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~ 89 (140)
T 3vh5_A 36 KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNS 89 (140)
T ss_dssp HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHH
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHH
Confidence 357899999999999999999999999999999999999999999999999744
No 30
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.54 E-value=0.00014 Score=64.92 Aligned_cols=66 Identities=23% Similarity=0.365 Sum_probs=61.3
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 405 RSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 405 rKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|..+|++|.+...|..++.++|-.|++|+.|.|...|++||+|.+..||..+||+..++-. +||
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl----LpG 102 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL----LPG 102 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH----SCH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh----CcH
Confidence 458999999999999999999999999999999999999999999999999999999988754 565
No 31
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.46 E-value=0.00021 Score=64.12 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=60.8
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-|..+|++|.+...|..++.++|-.|++|+.|.|...|++||+|.+..||..+||+..++-. +||
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl----LpG 105 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL----LPG 105 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH----SCH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh----CcH
Confidence 48999999999999999999999999999999999999999999999999999999988753 565
No 32
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.37 E-value=0.0005 Score=57.27 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=59.8
Q ss_pred CcCCccCCHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHH
Q 009343 396 EFGNRILTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHL 464 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqI--DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhL 464 (537)
|+.+..|.++-|.+|++.. |.+.+|.+|+-+++-++.|-||...+.+|+..||-++.+.||+.|++-++
T Consensus 3 ~~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVL 73 (81)
T ss_dssp ----CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHH
Confidence 4557788999999999987 55789999999999999999999999999999999999999999986554
No 33
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00035 Score=68.00 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=76.7
Q ss_pred CccCCHHHHHHHHHhhCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 399 NRILTKRSIQELVNQIDP-------SERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP-------~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
.-+|.|--++.|||+|.- ..++..++..+|.+.++.|+-.+.+.+...|.|.|--||..|||+|+. |-.|.+
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar-rirg~~ 87 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR-RIRGQF 87 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH-TSSCSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH-HHhhcc
Confidence 347889999999999932 468999999999999999999999999999999999999999999986 445666
Q ss_pred cCCCCcccccccCCCCCchHHHHHHH-HHHHHhh
Q 009343 472 LPGFSGDEIKTFRKPLVCDIHKERLA-AIKKSVM 504 (537)
Q Consensus 472 IPGfssDEIR~~RK~~pTEaHKQRMA-LIRKsI~ 504 (537)
..++...| ++....+.-|.+.+ +|.|+=+
T Consensus 88 ~~p~evme----~~~~~~~~~k~~~~~i~~ky~~ 117 (235)
T 2l5a_A 88 LVPRGSME----RHKLADENMRKVWSNIISKYES 117 (235)
T ss_dssp CCCSSSCH----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 54443222 22334455566666 4566543
No 34
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.30 E-value=0.0008 Score=58.62 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=66.1
Q ss_pred cCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 397 FGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
....-|...+|..+++.-.....+..|+-.+|...++.||..+++.|+..|+.+|..+|..+||..++++.-.+.
T Consensus 37 ~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~d 111 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFD 111 (119)
T ss_dssp SSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGG
T ss_pred cccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhh
Confidence 335558999999999975556699999999999999999999999999999999999999999999998864443
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.08 E-value=0.0016 Score=60.69 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 404 KRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+--|..++++|.|...|..++.+.|-.|.+|+++.|+..|++|+++.+..||..+||+..++..
T Consensus 6 ~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 6 SSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999999999999999999999999988754
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.04 E-value=0.00083 Score=56.65 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 398 ~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
.+-.|.=.+|..+++.-+....+..|+--+|...+|-||.++++.|+..|+++|..+|..+||.++++++-.+.
T Consensus 8 ~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~ 81 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPA 81 (98)
T ss_dssp --CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC------
T ss_pred cCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhh
Confidence 34557778899999974334799999999999999999999999999999999999999999999999865544
No 37
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.97 E-value=0.0025 Score=53.60 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=58.9
Q ss_pred CCccCCHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHH
Q 009343 398 GNRILTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHL 464 (537)
Q Consensus 398 ~nrILtKrKLqELVrqI--DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhL 464 (537)
.+..|.++-|.+|++.. |.+.+|.+|+-.++-++.|-||...+.+|+..|+-.+...||+.|++-+|
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 34578899999999965 56789999999999999999999999999999999999999999986554
No 38
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=96.65 E-value=0.0044 Score=54.72 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=62.3
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+-.|.-.+|+.++++-...++|..++-..|..+.|.|+.+|++.|..+|+|.+..+|..+||++.++.
T Consensus 21 gL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 34567889999999986778999999999999999999999999999999999999999999998774
No 39
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=96.57 E-value=0.0052 Score=54.06 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=61.9
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+-.|.-.+++.++++-.-.+++..++-..|..+.|.|+.+|++.|..+|+|.|..+|..+||++.++.
T Consensus 20 gLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp TCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 34567788999999987678999999999999999999999999999999999999999999998764
No 40
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=96.55 E-value=0.0037 Score=55.61 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=62.3
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+-.|.-.+|+.++++-...++|..++-..|..+.|.|+.+|++.|..+|+|.+..+|..+||++.++.
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 34567889999999976778999999999999999999999999999999999999999999998764
No 41
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.52 E-value=0.0045 Score=55.23 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=62.6
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+-.|.-.+|+.++++-...++|..++-..|..+.|.|+.+|++.|+.+|+|.+..+|..+||++.++.
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 44678899999999976777999999999999999999999999999999999999999999998764
No 42
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=96.49 E-value=0.0053 Score=56.15 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=62.2
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+-.|.-.+|..++++-.-.++|+.++-..|..+.|.|+.+|++.|..+|+|.+..+|..+||++.++.
T Consensus 42 gLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 34567788999999987778999999999999999999999999999999999999999999998764
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.25 E-value=0.017 Score=48.70 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=54.4
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-CcchhhHHHHHhh
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSD-TLEAKDILVHLER 466 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSd-TLEvKDVQLhLER 466 (537)
-|+|+++..|++.|. +..+.++|..+|--||..||-++++.|..+.+.++.. -|..+.|.-.+.|
T Consensus 16 ~f~k~~vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp CCCHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 479999999999995 5689999999999999999999999999999887533 5666666555544
No 44
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=96.17 E-value=0.011 Score=52.60 Aligned_cols=68 Identities=9% Similarity=0.107 Sum_probs=60.8
Q ss_pred CccCCHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 399 NRILTKRSIQELVNQID-PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 399 nrILtKrKLqELVrqID-P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+-.|.-.+|+.++++-. ..++|+.++-..|..+.|.|+.+|++.|...|+|.|..+|..+||++.+..
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 34567788999999865 346999999999999999999999999999999999999999999998765
No 45
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.85 E-value=0.011 Score=53.23 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=54.0
Q ss_pred cCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCcchhhHHHHHhhccCcc
Q 009343 397 FGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLA-KHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLA-KHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
.....|.-.+|..+++.-.-...|..++-.+|...++.||..++..|+..| +.+|..+|..+||..++++.-.+.
T Consensus 15 ~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~d 90 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLE 90 (140)
T ss_dssp --------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTG
T ss_pred ccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhh
Confidence 455667778888888864334689999999999999999999999999999 999999999999999999864444
No 46
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=95.82 E-value=0.023 Score=52.89 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=61.2
Q ss_pred CccCCHHHHHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 399 NRILTKRSIQELVNQIDP-SERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP-~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+-.|.=.+++.++++-.. .++++.++-..|..+.|.|+.+|++.|..+|||.|..+|..+||++.+..
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 446677899999998743 57999999999999999999999999999999999999999999998764
No 47
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.32 E-value=0.26 Score=46.13 Aligned_cols=68 Identities=10% Similarity=0.188 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccC
Q 009343 402 LTKRSIQELVNQID--PSERLDPDVEDILVDIAED----FVESITMFGCSLAKHRKSDTLEAKDILVHLERNWN 469 (537)
Q Consensus 402 LtKrKLqELVrqID--P~e~LD~DVEELLLeIADD----FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWN 469 (537)
+++..+.++++..- .+..|++++.+.|.++++. .+.+++..++.+|..++.+.|+.+||.-.|+...+
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Confidence 46777777777542 3467999999999999984 77889999999999999999999999988886433
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.19 Score=42.90 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------CCcchhhHH
Q 009343 401 ILTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKS-------DTLEAKDIL 461 (537)
Q Consensus 401 ILtKrKLqELVrqI--DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKS-------dTLEvKDVQ 461 (537)
.|.|.-|.+|+..- +.+.+|..|+-+++-++.|-||+..+-+|..-.+--+. -.||+.|+.
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLE 70 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLE 70 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHH
Confidence 36677788888744 66789999999999999999999999999655444222 268888874
No 49
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=90.78 E-value=0.24 Score=41.01 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 009343 404 KRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSD 453 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSd 453 (537)
++||.+++++ -+-..+.+||+++|---+++-+.++++.-+.+|+||...
T Consensus 9 qkri~~I~~k-~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R~~~ 57 (75)
T 1h3o_A 9 QRRILEIGKK-HGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFS 57 (75)
T ss_dssp HHHHHHHHHT-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHh-cCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3555666665 344678999999999999999999999999999999866
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.12 E-value=0.81 Score=42.70 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=56.1
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHhhhhcCCCCc
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDF-----------------------VESITMFGCSLAKHRKSDTL 455 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDF-----------------------VDsVvs~ACkLAKHRKSdTL 455 (537)
..++..+.|.++.+.+ .+..+++++.+.|.+++.+. ...++..+..+|+.++.+.|
T Consensus 207 ~~~~~~~~i~~~~~~~-~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v 285 (331)
T 2r44_A 207 QKIVSKNDVLEIRNEI-NKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYV 285 (331)
T ss_dssp CCCSCHHHHHHHHHHH-HTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBC
T ss_pred cccCCHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCC
Confidence 4567777777766555 46789999999999988543 34567777888999999999
Q ss_pred chhhHHHHHhhccCccc
Q 009343 456 EAKDILVHLERNWNMTL 472 (537)
Q Consensus 456 EvKDVQLhLERnWNI~I 472 (537)
+..||.-.++.-+..++
T Consensus 286 ~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 286 LPEDIKEVAYDILNHRI 302 (331)
T ss_dssp CHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHhHhhc
Confidence 99999988887666554
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.75 E-value=0.94 Score=41.87 Aligned_cols=56 Identities=5% Similarity=-0.142 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCccc
Q 009343 417 SERLDPDVEDILVDIAED-------FVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTL 472 (537)
Q Consensus 417 ~e~LD~DVEELLLeIADD-------FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~I 472 (537)
...|++++.++|.+++.. -+.+++..++.+|+.++.+.|+.+||...++.-+.-++
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 458999999999999875 57899999999999999999999999877776554443
No 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.69 E-value=1.4 Score=40.60 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 401 ILTKRSIQELVNQI----DPSERLDPDVEDILVDIAE------DFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 401 ILtKrKLqELVrqI----DP~e~LD~DVEELLLeIAD------DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
-++...+.++++.. -....+++++.+.|.++++ .++.+++..++.+|..++...|+.+||.-.+++.
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 196 PYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 34677777777753 2346899999999999998 3456789999999998888899999998666553
No 53
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=88.83 E-value=1.2 Score=39.69 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHhhC----C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009343 401 ILTKRSIQELVNQID----P---SERLDPDVEDILVDIAEDFVESITMFGCSLAKHR 450 (537)
Q Consensus 401 ILtKrKLqELVrqID----P---~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHR 450 (537)
+|.|--.+.|||+|- . ..++..++..+|.+.+|+|+-.+.+.+-..|.|.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA 57 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHL 57 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcC
Confidence 467778889999882 2 5689999999999999999999999999999998
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.32 E-value=0.67 Score=42.80 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhhC----CCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 402 LTKRSIQELVNQID----PSERLDPDVEDILVDIAE------DFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 402 LtKrKLqELVrqID----P~e~LD~DVEELLLeIAD------DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+++..+.++++..- ....+++++.+.|.++++ .++.+++..++.+|..++.+.|+.+||.-.+++.
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 46777888777541 346899999999999998 5677999999999999898999999998777664
No 55
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=86.63 E-value=0.32 Score=38.05 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=34.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCccccccc
Q 009343 426 DILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTF 483 (537)
Q Consensus 426 ELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfssDEIR~~ 483 (537)
+.|.+.++.| |..+|..|+..|-.|+...|+.+|+.-.|++- .|+.. ++++-|
T Consensus 26 ~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~----~ps~~-~~l~~y 82 (83)
T 3aji_B 26 EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV----IKKDE-QEHEFY 82 (83)
T ss_dssp HHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH----CC----------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH----ccCch-HHHHhc
Confidence 3344444433 77899999999999999999999998888874 46655 555544
No 56
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.32 E-value=1.7 Score=37.24 Aligned_cols=62 Identities=10% Similarity=-0.051 Sum_probs=43.7
Q ss_pred CHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 403 TKRSIQELVNQI--DPSERLDPDVEDILVDIAE---DFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 403 tKrKLqELVrqI--DP~e~LD~DVEELLLeIAD---DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
+.+.+.++++.+ ..+..+++++.+.|.+.++ .-+.++++.+|.+|...+. .|+.+||.-.|+
T Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 175 MDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp CGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 334444455443 1345799999999998876 3566788888988876664 589999987775
No 57
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.19 E-value=2 Score=39.94 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHhhC----CCCCCCHHHHHHHHHHH---------H---HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 402 LTKRSIQELVNQID----PSERLDPDVEDILVDIA---------E---DFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 402 LtKrKLqELVrqID----P~e~LD~DVEELLLeIA---------D---DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
+++..+.++++..- ....+++++.+.|.+++ + .++.+++..++.+|..++.+.|+.+||...++
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 45677777776542 23579999999999999 2 34788999999999999999999999988777
Q ss_pred hc
Q 009343 466 RN 467 (537)
Q Consensus 466 Rn 467 (537)
..
T Consensus 273 ~~ 274 (389)
T 1fnn_A 273 EV 274 (389)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.83 E-value=3.7 Score=38.26 Aligned_cols=64 Identities=6% Similarity=0.088 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHH---H---HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 402 LTKRSIQELVNQI----DPSERLDPDVEDILVDIAE---D---FVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 402 LtKrKLqELVrqI----DP~e~LD~DVEELLLeIAD---D---FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+++..+.++++.. -....+++++.+.|.++++ - .+.+++..++.+|. +...|+.+||.-.|++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 4778888888764 1346899999999999987 2 46678888898988 66789999998887765
No 59
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=83.62 E-value=0.54 Score=36.47 Aligned_cols=44 Identities=7% Similarity=0.065 Sum_probs=37.5
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 425 EDILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 425 EELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
.+.|.+.++.| |..||..|+..|-.|+...|+.+|+.-.|++..
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 35566677777 899999999999999999999999999998854
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.13 E-value=5.8 Score=41.79 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHhhhh----cCCCCcchhhHHHHHhhccCcccCCCCccc
Q 009343 416 PSERLDPDVEDILVDIAEDF---------VESITMFGCSLAKH----RKSDTLEAKDILVHLERNWNMTLPGFSGDE 479 (537)
Q Consensus 416 P~e~LD~DVEELLLeIADDF---------VDsVvs~ACkLAKH----RKSdTLEvKDVQLhLERnWNI~IPGfssDE 479 (537)
....+++++.+.+.++++.| +.++++.+|..++. .+...|+.+||.-++++..++.+..+..+|
T Consensus 369 ~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~ 445 (758)
T 1r6b_X 369 HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSD 445 (758)
T ss_dssp HTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSH
T ss_pred cCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhH
Confidence 35679999999999999886 44678888888876 345678999999999997777766665554
No 61
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=83.11 E-value=0.48 Score=38.12 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=36.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 426 DILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 426 ELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+.|.+..+.| |..||..|+..|-+|+...|+.+|+.-.|++-
T Consensus 26 ~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 26 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 4555666667 89999999999999999999999999999884
No 62
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=82.63 E-value=5.4 Score=31.33 Aligned_cols=73 Identities=8% Similarity=0.054 Sum_probs=40.8
Q ss_pred CcCCccCCHHHHHHHHHhhCCCCCCCHH-HHHHHHHH---------HHHHHHHH----------------HHHHHHhhhh
Q 009343 396 EFGNRILTKRSIQELVNQIDPSERLDPD-VEDILVDI---------AEDFVESI----------------TMFGCSLAKH 449 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP~e~LD~D-VEELLLeI---------ADDFVDsV----------------vs~ACkLAKH 449 (537)
.+++..|++..|..+++.++- .++++ +++++..+ .++|+.-+ +..++++.-.
T Consensus 22 ~d~~G~i~~~el~~~l~~~~~--~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~ 99 (153)
T 3ox6_A 22 KDKDGYINCRDLGNCMRTMGY--MPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDT 99 (153)
T ss_dssp HHCSSSCCHHHHHHHHHHTTC--CCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHHCT
T ss_pred CCCCCcCcHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHHhhccccccccHHHHHHHHHHhCC
Confidence 345567888888888877643 33333 33333332 34565443 3444444444
Q ss_pred cCCCCcchhhHHHHHhhccCc
Q 009343 450 RKSDTLEAKDILVHLERNWNM 470 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI 470 (537)
.+...|+..++.-.|...+|.
T Consensus 100 d~~G~i~~~el~~~l~~~~~~ 120 (153)
T 3ox6_A 100 NGDGEISTSELREAMRALLGH 120 (153)
T ss_dssp TCSSSBCHHHHHHHHHHHHSS
T ss_pred CCCCcCcHHHHHHHHHHHhcC
Confidence 556667777777666664443
No 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.56 E-value=1.5 Score=39.57 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhhCCCCCCCHH-HHHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccC
Q 009343 402 LTKRSIQELVNQIDPSERLDPD-VEDILVDIAED----FVESITMFGCSLAKHRKSDTLEAKDILVHLERNWN 469 (537)
Q Consensus 402 LtKrKLqELVrqIDP~e~LD~D-VEELLLeIADD----FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWN 469 (537)
.+.+...++++..-....++.+ ..+.|.++++. -|+.++..|+..|..++.+.|+.+||.-.|++...
T Consensus 188 p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 4666777777766444444333 23445555544 47789999999999999999999999999987643
No 64
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.18 E-value=5.7 Score=41.31 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=55.1
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAED-------------FVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADD-------------FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
..+++...|.++.+.+. ...++++|.|.+.+++.+ ....++..|..+|+.++.+.|+..||. .+.
T Consensus 206 ~~~~~~e~l~~~~~~~~-~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 206 ALQVTDEEYERWQKEIG-EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLK 283 (500)
T ss_dssp TTSBCHHHHHHHHHHHT-TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGG
T ss_pred cceecHHHHHHHHhcCC-cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHH
Confidence 56788999999888884 478999999999999853 455688899999999999999999998 443
Q ss_pred h
Q 009343 466 R 466 (537)
Q Consensus 466 R 466 (537)
.
T Consensus 284 ~ 284 (500)
T 3nbx_X 284 D 284 (500)
T ss_dssp G
T ss_pred h
Confidence 3
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.83 E-value=1.6 Score=39.16 Aligned_cols=65 Identities=9% Similarity=0.088 Sum_probs=44.3
Q ss_pred CHHHHHHHHHhhCCCCCCCHHH-HHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 403 TKRSIQELVNQIDPSERLDPDV-EDILVDIAED----FVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 403 tKrKLqELVrqIDP~e~LD~DV-EELLLeIADD----FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+.+...++++..-....+++++ .++|.+..+. -|++++..|+.+|..++.+.|+.+|+.-.+++.
T Consensus 183 ~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 183 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 4444455666554444555554 3344333333 467899999999999999999999999888863
No 66
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=80.82 E-value=4.2 Score=42.26 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 416 PSERLDPDVEDILVDIAE-------------DFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 416 P~e~LD~DVEELLLeIAD-------------DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
....|++++.+.|++.+. ..+.+++..|+.+|+.++.+.|+.+||.-.+++
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 345899999999988763 467789999999999999999999999877754
No 67
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=78.31 E-value=4.3 Score=40.50 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHH-H---HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCc
Q 009343 402 LTKRSIQELVNQID--PSERLDPDVEDILVDIA-E---DFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNM 470 (537)
Q Consensus 402 LtKrKLqELVrqID--P~e~LD~DVEELLLeIA-D---DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI 470 (537)
+++..|.++|+.+. .+..+++++.++|.+++ + ....++++.|..+|..++.+.|+.+||.-.++.-+|.
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~ 440 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDA 440 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcCh
Confidence 47778888887653 24579999999999998 4 3567788888899999999999999999888775543
No 68
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=77.51 E-value=7.5 Score=36.50 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 401 ILTKRSIQELVNQI----DPSERLDPDVEDILVDIAE---------DFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 401 ILtKrKLqELVrqI----DP~e~LD~DVEELLLeIAD---------DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
-|+.+.+.+|++.. .....+++++.+.|.++++ -++..++..++.+|..++...++.+||.-.+++.
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45677788887542 2335689999999999998 3788999999999999998889999998777664
Q ss_pred c
Q 009343 468 W 468 (537)
Q Consensus 468 W 468 (537)
.
T Consensus 294 ~ 294 (412)
T 1w5s_A 294 E 294 (412)
T ss_dssp -
T ss_pred h
Confidence 3
No 69
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=77.16 E-value=3.7 Score=34.13 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 401 ILTKRSIQELVNQID--PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 401 ILtKrKLqELVrqID--P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
-+++..+.++++++- .+..+++++.+.|.+.++--+..++...++++... +.|+.+||.-.+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 356777777777652 23468999998888888766665555555555433 6899999977664
No 70
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=76.69 E-value=1.4 Score=35.14 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=12.8
Q ss_pred hhcCCCCcchhhHHHHHhhccCcccC
Q 009343 448 KHRKSDTLEAKDILVHLERNWNMTLP 473 (537)
Q Consensus 448 KHRKSdTLEvKDVQLhLERnWNI~IP 473 (537)
..-|-+.|++-+|...||+.||+.||
T Consensus 39 ~dlg~DSl~~vel~~~lE~~fgi~i~ 64 (92)
T 1fh1_A 39 TSLGIDSLGLADVLWDLEQLYGIKIE 64 (92)
T ss_dssp -------CTTTTHHHHHHHC------
T ss_pred hhcCCChHHHHHHHHHHHHHhCCccC
Confidence 44577889999999999999999998
No 71
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=76.02 E-value=2.7 Score=37.19 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHhhCC--CCCCCHHH-HHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 402 LTKRSIQELVNQIDP--SERLDPDV-EDILVDIAED----FVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 402 LtKrKLqELVrqIDP--~e~LD~DV-EELLLeIADD----FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.+.+...+|++.+-. ...++.++ .+.|.+..+. -|..++..||..|..++...|+.+|+...|++.
T Consensus 177 p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 344555555544322 22334433 2444444333 477889999999999989999999999888874
No 72
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=75.86 E-value=9.1 Score=38.83 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHhh--C-------CCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHhhhhc--CCCCcchhhHHHHHhhc
Q 009343 402 LTKRSIQELVNQI--D-------PSERLDPDVEDILVDIAED---FVESITMFGCSLAKHR--KSDTLEAKDILVHLERN 467 (537)
Q Consensus 402 LtKrKLqELVrqI--D-------P~e~LD~DVEELLLeIADD---FVDsVvs~ACkLAKHR--KSdTLEvKDVQLhLERn 467 (537)
+++..|.++++.+ + ....|++++.+.|.++++- -+.++++.+|.+|..+ +...|+.+||.-.|.+.
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 5677788877766 2 3356999999999999763 4556778888888755 45679999998887764
No 73
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=75.64 E-value=1.8 Score=38.80 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhhCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHH
Q 009343 403 TKRSIQELVNQIDPSERLDPDV-EDILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHL 464 (537)
Q Consensus 403 tKrKLqELVrqIDP~e~LD~DV-EELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhL 464 (537)
+.+...++++.......+++|+ .+.|.+..+.| |++++..|+.+|..++...|+.+|+.-.|
T Consensus 187 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 3444445555544445566554 45555554433 67889999999998888889999987654
No 74
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=75.38 E-value=8.5 Score=35.17 Aligned_cols=66 Identities=9% Similarity=0.010 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 401 ILTKRSIQELVNQID--PSERLDPDVEDILVDIAE---DFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 401 ILtKrKLqELVrqID--P~e~LD~DVEELLLeIAD---DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
.++.+.+.++++.+- -+..+++++.+.|.+.++ .++.+++..++.+|..++.+.|+..|+...++.
T Consensus 167 ~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 167 YYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 346677777777663 245799999999888763 356678888888898888888999999877765
No 75
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=74.99 E-value=0.59 Score=45.47 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=4.2
Q ss_pred hhhcccccCCCCCCC
Q 009343 319 QQHLSSVQPQQSKPS 333 (537)
Q Consensus 319 qqqlsq~qqqq~~~~ 333 (537)
||++.|.||||+++.
T Consensus 381 ~~~~~~~~~~~~~~~ 395 (449)
T 3iot_A 381 FESLKSFQQQQQQQQ 395 (449)
T ss_dssp HHHHHHTC-------
T ss_pred HHHHHhhcccccccc
Confidence 455555544444333
No 76
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=72.98 E-value=8.8 Score=34.16 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=22.5
Q ss_pred cCCHHHHHH-HHHhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 009343 401 ILTKRSIQE-LVNQIDPSERLDPDVEDILVDIAEDFVES 438 (537)
Q Consensus 401 ILtKrKLqE-LVrqIDP~e~LD~DVEELLLeIADDFVDs 438 (537)
|-+|+-|+| |++-|.+....+.+|.+-+|+|.+.|-+.
T Consensus 93 va~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 93 VASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 445666666 56666555444556666666666666553
No 77
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=72.97 E-value=1.5 Score=35.49 Aligned_cols=42 Identities=7% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 426 DILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 426 ELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+.|.+.++.| |..||..|+..|-.|....|+.+|+.-.|++.
T Consensus 36 ~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 36 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4455555555 67899999999999988999999999988874
No 78
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.65 E-value=1.8 Score=39.66 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=41.3
Q ss_pred CHHHHHHHHHhhCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHH
Q 009343 403 TKRSIQELVNQIDPSERLDPDV-EDILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHL 464 (537)
Q Consensus 403 tKrKLqELVrqIDP~e~LD~DV-EELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhL 464 (537)
+.+...++++.......+++|+ .++|.+..+.| |++++..|+.+|..++...|+.+||.-.|
T Consensus 211 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 4444555555554445666655 44444444433 56889999999998888899999987655
No 79
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=72.19 E-value=6.7 Score=37.36 Aligned_cols=67 Identities=10% Similarity=0.195 Sum_probs=48.6
Q ss_pred ccCCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 400 RILTKRSIQELVNQID--PSERLDPDVEDILVDIAE---DFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 400 rILtKrKLqELVrqID--P~e~LD~DVEELLLeIAD---DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
..+++..|.++|+++. -+..+|+|+.+.|.+.++ ..+.+++..+..+|..++...|+..+|.-.|++
T Consensus 178 d~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 178 DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV 249 (334)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4457778888887652 245789988777766543 245567777777777777888999999988887
No 80
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=71.63 E-value=15 Score=29.36 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 407 IQELVNQIDPSERLDPDVEDILVDIAEDF---------VESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 407 LqELVrqIDP~e~LD~DVEELLLeIADDF---------VDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
|-++..+..-+ .|.+-..+.|.+..||| -.++|..||+.|..++.. ..+=|.-+|+
T Consensus 4 ~~~~~e~~g~g-~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~--~~~Yi~~IL~ 68 (83)
T 2i5u_A 4 IRSIWENNGFG-LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANAR--NYNYINAILK 68 (83)
T ss_dssp HHHHHHTTTSC-SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCC--SHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCC--CHHHHHHHHH
Confidence 44455544334 78888888888989988 789999999999877644 3444444453
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=70.40 E-value=2.5 Score=44.44 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHH------------------HHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 419 RLDPDVEDILVDIAED------------------FVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 419 ~LD~DVEELLLeIADD------------------FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
.|++++.++|.++..+ -+++++..|..+||.++++.|+.+||.-+++
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 7888888888887654 2678999999999999999999999987765
No 82
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=69.09 E-value=15 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=35.6
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009343 405 RSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSL 446 (537)
Q Consensus 405 rKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkL 446 (537)
+.|+.|+--.+-...-.+|..++|=||.-+||.+++..|++.
T Consensus 4 ~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v 45 (45)
T 1bh9_A 4 KELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp HHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 458888887766677778889999999999999999999863
No 83
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=71.94 E-value=1 Score=37.50 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHhhhhcCCCCcchhhHHHHHhhccCcccCCC
Q 009343 444 CSLAKHRKSDTLEAKDILVHLERNWNMTLPGF 475 (537)
Q Consensus 444 CkLAKHRKSdTLEvKDVQLhLERnWNI~IPGf 475 (537)
..| .--+-|.|++-+|...||++||+.||-.
T Consensus 50 ~~l-~dLGlDSL~~veL~~~lE~~fgi~i~~~ 80 (103)
T 2lte_A 50 SRM-EDLAFDSLVVSELSLKLRKEFGVTGVDD 80 (103)
Confidence 344 4457888999999999999999999853
No 84
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=67.64 E-value=8.9 Score=31.97 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHhhhhcCCCCcchhhHHHHH
Q 009343 402 LTKRSIQELVNQID--PSERLDPDVEDILVDIAEDFV---ESITMFGCSLAKHRKSDTLEAKDILVHL 464 (537)
Q Consensus 402 LtKrKLqELVrqID--P~e~LD~DVEELLLeIADDFV---DsVvs~ACkLAKHRKSdTLEvKDVQLhL 464 (537)
+++..+.++++.+- .+..+++++.+.|.+.++-.+ .+++..++.++ .+.|+.+||.-.|
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 56777888877652 345789999888888887544 44444444433 2378889886554
No 85
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=67.15 E-value=9.4 Score=40.76 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=51.2
Q ss_pred CCccCCHHHHHHHHHhhC---CCCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhhhcCCC
Q 009343 398 GNRILTKRSIQELVNQID---PSERLDPDVEDILVDIAEDF---------------------VESITMFGCSLAKHRKSD 453 (537)
Q Consensus 398 ~nrILtKrKLqELVrqID---P~e~LD~DVEELLLeIADDF---------------------VDsVvs~ACkLAKHRKSd 453 (537)
...+++...|.+++..+. -.-.|++++++.|.+++.+. ++.++..|..+||.|+++
T Consensus 390 ~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~ 469 (506)
T 3f8t_A 390 DTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD 469 (506)
T ss_dssp ----CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC
Confidence 446888888888777654 25689999999999886543 235778888999999999
Q ss_pred CcchhhHHHHHh
Q 009343 454 TLEAKDILVHLE 465 (537)
Q Consensus 454 TLEvKDVQLhLE 465 (537)
.|+.+||+..++
T Consensus 470 ~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 470 DVEPEDVDIAAE 481 (506)
T ss_dssp EECHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999976654
No 86
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.92 E-value=16 Score=32.88 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCcc
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGD 478 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfssD 478 (537)
|-+|+-|++|++-+++ +.+++|.+-+|+|...|-+.. .++. +--.++|+--.|+++ |+.||....+
T Consensus 91 vas~~Fl~el~~l~~~--~~~~~Vk~kil~li~~W~~~f-------~~~~--~l~~i~~~Y~~Lk~~-G~~FP~~~~~ 156 (163)
T 1x5b_A 91 VCSRDFATEVRAVIKN--KAHPKVCEKLKSLMVEWSEEF-------QKDP--QFSLISATIKSMKEE-GITFPPAGSQ 156 (163)
T ss_dssp HTSHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHT-------TTCS--TTHHHHHHHHHHHTT-TCCCCCCSSC
T ss_pred HhhHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHh-------cCCc--ccHHHHHHHHHHHHc-CCCCCCCCCC
Confidence 4457777777777753 457778888887777766542 1221 111366776677776 7888876544
No 87
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=66.86 E-value=3.2 Score=39.77 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=56.6
Q ss_pred ccCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 400 RILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMFG----CSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 400 rILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~A----CkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
--|+-.....+++.| |.-.++|++-.+...+=++.|+..+-..- ..|+..++...|..-|.--||.|.||+.+=|
T Consensus 134 ~Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~ 213 (291)
T 1pq4_A 134 IWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFHPSWAYFARDYNLVQIP 213 (291)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHHTTCEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEECCchHHHHHHCCCEEee
Confidence 456777777777777 33456788888888888888888765443 3456666666788899999999999998755
Q ss_pred CC
Q 009343 475 FS 476 (537)
Q Consensus 475 fs 476 (537)
+-
T Consensus 214 ~~ 215 (291)
T 1pq4_A 214 IE 215 (291)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 88
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=66.67 E-value=10 Score=34.93 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhH
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDV 460 (537)
|++=.++++|.|.. .+.-+|++=.+-+.+++++=+.|++..|.+-||..+.++|+..|+
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 46667899999987 446677777777889999999999999999999999999988886
No 89
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=65.61 E-value=28 Score=29.76 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=42.3
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH---------HHHHHHHH----------HHHHHHhhhhcCCCCc
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI---------AEDFVESI----------TMFGCSLAKHRKSDTL 455 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI---------ADDFVDsV----------vs~ACkLAKHRKSdTL 455 (537)
+.+++..|++..|..+++.++-. ++.++++++..+ .+||+.-+ +..++++.-.-+...|
T Consensus 62 D~d~~G~i~~~El~~~l~~~g~~--~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I 139 (191)
T 3k21_A 62 DEDGKGYITKEQLKKGLEKDGLK--LPYNFDLLLDQIDSDGSGKIDYTEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEI 139 (191)
T ss_dssp CTTCSSEECHHHHHHHHHHTTCC--CCTTHHHHHHHHCTTCSSSEEHHHHHHHHSCGGGCCHHHHHHHHHHHSTTCSSCB
T ss_pred CCCCCCCCcHHHHHHHHHHcCCC--cHHHHHHHHHHhCCCCCCeEeHHHHHHHHHhhhhccHHHHHHHHHHhCCCCCCcC
Confidence 45677789999999999988544 336666666554 26676543 3334444434445556
Q ss_pred chhhHHHHHh
Q 009343 456 EAKDILVHLE 465 (537)
Q Consensus 456 EvKDVQLhLE 465 (537)
+..++.-+|.
T Consensus 140 s~~El~~~l~ 149 (191)
T 3k21_A 140 TTAELAHILY 149 (191)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6666655554
No 90
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=65.18 E-value=2.8 Score=39.52 Aligned_cols=59 Identities=8% Similarity=-0.001 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhhCC--CCCCCHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhH
Q 009343 402 LTKRSIQELVNQIDP--SERLDPDVEDILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDI 460 (537)
Q Consensus 402 LtKrKLqELVrqIDP--~e~LD~DVEELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDV 460 (537)
.+.+...++++.+-. ...++++..+.|.+.++.| |+.++..|+..|..|..+.++.++|
T Consensus 184 p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 184 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp CCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 355555666665422 3357888888888877764 6677777777777776655555444
No 91
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=63.77 E-value=18 Score=31.43 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=47.0
Q ss_pred CCCCcCCccCCHHHHHHHHHhhCC----CCCCCHHHHHHHHHHH----------HHHHHH-----HHHHHHHhhhhcCCC
Q 009343 393 ESDEFGNRILTKRSIQELVNQIDP----SERLDPDVEDILVDIA----------EDFVES-----ITMFGCSLAKHRKSD 453 (537)
Q Consensus 393 ~~~e~~nrILtKrKLqELVrqIDP----~e~LD~DVEELLLeIA----------DDFVDs-----Vvs~ACkLAKHRKSd 453 (537)
.+..+++..|++..|..+++.+.. ...++++..+.|+..+ +||+.- -+..+.++.- .++.
T Consensus 12 ~~~~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD-d~~G 90 (174)
T 2i7a_A 12 SGLVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ-TSPG 90 (174)
T ss_dssp CCSCC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC-SBTT
T ss_pred cccCCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 344566667888888888888732 2345444333333333 366642 2456777777 7888
Q ss_pred CcchhhHHHHHhhc
Q 009343 454 TLEAKDILVHLERN 467 (537)
Q Consensus 454 TLEvKDVQLhLERn 467 (537)
.|+.+++..+|+..
T Consensus 91 ~I~~~El~~~l~~l 104 (174)
T 2i7a_A 91 VLLSSDLWKAIENT 104 (174)
T ss_dssp BEEGGGHHHHHHTC
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999888764
No 92
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=63.61 E-value=2.4 Score=33.01 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=24.9
Q ss_pred HHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 444 CSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 444 CkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
..|-..-+-|.|++-++...||++||+.|+-
T Consensus 35 ~~l~~dlglDSl~~vel~~~lE~~fgi~i~~ 65 (88)
T 2l4b_A 35 TNLAKDFNLDSLDFVDLIMSLEERFSLEISD 65 (88)
T ss_dssp SCTTTTTTCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred CchhhccCCcHHHHHHHHHHHHHHHCCCcCH
Confidence 3443456778889999999999999999874
No 93
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=63.60 E-value=6.4 Score=35.85 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=42.7
Q ss_pred CHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhc----CCCCcchhhHHHHHh
Q 009343 403 TKRSIQELVNQI--DPSERLDPDVEDILVDIAE-----------DFVESITMFGCSLAKHR----KSDTLEAKDILVHLE 465 (537)
Q Consensus 403 tKrKLqELVrqI--DP~e~LD~DVEELLLeIAD-----------DFVDsVvs~ACkLAKHR----KSdTLEvKDVQLhLE 465 (537)
+...+.++++.+ .-...+++++.+.|.++++ ..+.++++.+|..+..| +.+.++..|+.....
T Consensus 205 ~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~ 284 (309)
T 3syl_A 205 SDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAE 284 (309)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccH
Confidence 345566666544 2356799999999998854 35667888888766655 456677888765554
Q ss_pred hcc
Q 009343 466 RNW 468 (537)
Q Consensus 466 RnW 468 (537)
..|
T Consensus 285 ~d~ 287 (309)
T 3syl_A 285 EDI 287 (309)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 94
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=62.10 E-value=37 Score=27.25 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=18.4
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
.+..++++.-..+...|+..|+.-.|..
T Consensus 100 ~~~~~F~~~D~d~~G~i~~~e~~~~l~~ 127 (166)
T 2aao_A 100 HLFAAFTYFDKDGSGYITPDELQQACEE 127 (166)
T ss_dssp HHHHHHHHHCTTCSSSBCHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3455555555566677888888777664
No 95
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=61.91 E-value=5 Score=41.22 Aligned_cols=70 Identities=24% Similarity=0.304 Sum_probs=51.9
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhccC----cccC-CCCccc-----ccccC------------CCCCchHHHHHH
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNWN----MTLP-GFSGDE-----IKTFR------------KPLVCDIHKERL 496 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnWN----I~IP-GfssDE-----IR~~R------------K~~pTEaHKQRM 496 (537)
+++..|.|-++|+-. |.-.+|.-.|++.+| |||| |+.+|| |..+- -..+.+.|-+++
T Consensus 175 ltTe~cLLn~nRNP~-lsk~eIE~~L~~~LGv~kvIWL~~Gl~gDddTdgHID~larFv~pg~Vl~~~~~d~~dp~y~~~ 253 (383)
T 3h7c_X 175 LVTEECLLNKNRNPH-MSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDDETDPQYERS 253 (383)
T ss_dssp EEEHHHHTCTTTCTT-SCHHHHHHHHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEEEEEECCCTTSHHHHHH
T ss_pred EEEhhhccCCCCCCC-CCHHHHHHHHHHHhCCcEEEEeCCCcCCCCCcCcceeeeEEecCCCEEEEEccCCCCCcCHHHH
Confidence 457889999999987 789999999999999 6789 877764 22211 122445688899
Q ss_pred HHHHHHhhhhhhh
Q 009343 497 AAIKKSVMATEVA 509 (537)
Q Consensus 497 ALIRKsI~s~~~a 509 (537)
..+.+.|+....+
T Consensus 254 ~~~~~~L~~~tda 266 (383)
T 3h7c_X 254 VEALSVLSNSIDA 266 (383)
T ss_dssp HHHHHHHHTCBCT
T ss_pred HHHHHHHHhhhhc
Confidence 9888888876544
No 96
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=61.76 E-value=3.4 Score=43.00 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhhCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 403 TKRSIQELVNQIDPSERLDPDV-EDILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 403 tKrKLqELVrqIDP~e~LD~DV-EELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+.+...++++..-....+++|| .++|.+..+-| ++++++.|+.+|..++.+.|+.+|+...|++-
T Consensus 202 d~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp CHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 4444556666655556677766 45555544433 57899999999998888899999999999874
No 97
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=61.21 E-value=9.2 Score=36.01 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=54.4
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhH
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDV 460 (537)
..|++=.+|++|.|.. .+.-+|++=.+-+.|++++=+.|++..|-+-||..+.++|+..|+
T Consensus 24 m~vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 24 LRPKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp TSCTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HhcCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 6699999999999987 556778887788899999999999999999999999999988886
No 98
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=60.86 E-value=12 Score=35.83 Aligned_cols=76 Identities=11% Similarity=0.154 Sum_probs=54.3
Q ss_pred CccCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----Hhhhh--cCCCCcchhhHHHHHhhccCcc
Q 009343 399 NRILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMFGC----SLAKH--RKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 399 nrILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~AC----kLAKH--RKSdTLEvKDVQLhLERnWNI~ 471 (537)
---|.-.....+++.| |.-.++|++-.+...+=+++|+..+-...- +|++. ++...|..-|.--||.|.||+.
T Consensus 104 HvWldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~ 183 (282)
T 3mfq_A 104 HFWFSIPLYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFT 183 (282)
T ss_dssp CGGGSHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCE
T ss_pred CccCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCe
Confidence 3456777778888887 445689999889888889999888755443 34443 2233445578878999999998
Q ss_pred cCC
Q 009343 472 LPG 474 (537)
Q Consensus 472 IPG 474 (537)
+=|
T Consensus 184 ~~~ 186 (282)
T 3mfq_A 184 LYA 186 (282)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 99
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=60.24 E-value=1.1 Score=40.32 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhCCCCCCCHHH-HHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 404 KRSIQELVNQIDPSERLDPDV-EDILVDIAED----FVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~DV-EELLLeIADD----FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
.+...++++..-....+++++ .+.|.++++. -|.+++..|+.+|..++.+.|+.+||.-.|++
T Consensus 185 ~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp TTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 333444455443333333332 3334444443 37789999999999988889999998655554
No 100
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=60.19 E-value=2.6 Score=32.34 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.2
Q ss_pred hhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 448 KHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 448 KHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
..-+-|.|++-++...||+.||+.|+-
T Consensus 37 ~dlG~DSl~~vel~~~le~~fgi~i~~ 63 (84)
T 2kwl_A 37 EDLNADSLDIYELLYLLEEAFDDKIPE 63 (84)
T ss_dssp HTSSSCHHHHHHHHHHHHHHHTCCTTT
T ss_pred hhcCCCHHHHHHHHHHHHHHHCCCcCH
Confidence 445778889999999999999999874
No 101
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=59.78 E-value=19 Score=27.61 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 402 LTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 402 LtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+++..|.+|++.+|.+..|+-+---.++.+..+ -...+..+.++.-..+...|+.+|+...|.+.
T Consensus 6 ~~~~e~~~l~~~~d~~g~i~~~eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (108)
T 2pvb_A 6 LKDADVAAALAACSAADSFKHKEFFAKVGLASK-SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNF 70 (108)
T ss_dssp SCHHHHHHHHHHTCSTTCCCHHHHHHHHTGGGS-CHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred CCHHHHHHHHHHhCCCCcCcHHHHHHHHhCChh-HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 789999999999997777775422222222111 13345566666666777789999988777653
No 102
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=59.36 E-value=62 Score=26.02 Aligned_cols=70 Identities=14% Similarity=0.272 Sum_probs=39.5
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHH-HHHHHHHH---------HHHHHHHH------------HHHHHHhhhhcCC
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPD-VEDILVDI---------AEDFVESI------------TMFGCSLAKHRKS 452 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~D-VEELLLeI---------ADDFVDsV------------vs~ACkLAKHRKS 452 (537)
+.+++..|++..|..+++.++. .++++ +++++..+ .+||+.-+ +..+++..-..+.
T Consensus 38 D~d~~G~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~ 115 (169)
T 3qrx_A 38 DTDGSGTIDAKELKVAMRALGF--EPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNS 115 (169)
T ss_dssp CTTCCSEECHHHHHHHHHHTSC--CCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred CCCCCCcCcHHHHHHHHHHcCC--CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHhcccCcHHHHHHHHHHhCCCCC
Confidence 3455667777777777776632 23333 33333322 24555443 3344555555567
Q ss_pred CCcchhhHHHHHhh
Q 009343 453 DTLEAKDILVHLER 466 (537)
Q Consensus 453 dTLEvKDVQLhLER 466 (537)
..|+..++.-.|+.
T Consensus 116 G~i~~~el~~~l~~ 129 (169)
T 3qrx_A 116 GTITIKDLRRVAKE 129 (169)
T ss_dssp SSBCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH
Confidence 77888888777765
No 103
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=58.53 E-value=8.4 Score=35.76 Aligned_cols=65 Identities=5% Similarity=0.018 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHhhCC--CCCCCHHHHHHHHHHHHH---HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 402 LTKRSIQELVNQIDP--SERLDPDVEDILVDIAED---FVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 402 LtKrKLqELVrqIDP--~e~LD~DVEELLLeIADD---FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
++.+.+.++++.+.. ...+++++.+.|.+...- .+.+++..++.+|..++.+.|+..||.-.+++
T Consensus 184 ~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 184 YKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 356666677666532 356889998888875443 46678888888998888899999999888876
No 104
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.78 E-value=8 Score=35.59 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHhhhhcCCC-CcchhhHHHHHh
Q 009343 402 LTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVESITMF---GCSLAKHRKSD-TLEAKDILVHLE 465 (537)
Q Consensus 402 LtKrKLqELVrqI--DP~e~LD~DVEELLLeIADDFVDsVvs~---ACkLAKHRKSd-TLEvKDVQLhLE 465 (537)
++...+.++++++ ..+..+|+++.+.|.++++--+..++.. ++.++..++.+ .|+.+||.-.++
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 4566666666654 2456799999999999987555554444 44444433333 688888876555
No 105
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=57.68 E-value=44 Score=28.05 Aligned_cols=48 Identities=13% Similarity=0.400 Sum_probs=29.1
Q ss_pred cCCc-cCCHHHHHHHHHh-hCC--CCCC-CHHHHHHHHHH---------HHHHHHHHHHHHH
Q 009343 397 FGNR-ILTKRSIQELVNQ-IDP--SERL-DPDVEDILVDI---------AEDFVESITMFGC 444 (537)
Q Consensus 397 ~~nr-ILtKrKLqELVrq-IDP--~e~L-D~DVEELLLeI---------ADDFVDsVvs~AC 444 (537)
+++. .|++..|.++++. +.. +..+ +.+|+++|.++ .+|||.-+...++
T Consensus 35 dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~~~~ 96 (113)
T 2lnk_A 35 EGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAM 96 (113)
T ss_dssp TSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHHHHH
T ss_pred CCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHHH
Confidence 4443 7899999999985 210 1233 45677766655 3478776655444
No 106
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=57.68 E-value=23 Score=32.11 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=47.6
Q ss_pred ccCCHHHHHHHHHhhCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCccc--CC
Q 009343 400 RILTKRSIQELVNQIDPS---ERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTL--PG 474 (537)
Q Consensus 400 rILtKrKLqELVrqIDP~---e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~I--PG 474 (537)
.|-+|+-|.+|++-|.+. ...+.+|.+-+|+|.++|-+..- . + -.++|+--.|++. |+.+ |.
T Consensus 88 evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~-------~----~-~~i~~~y~~Lk~~-G~~f~~P~ 154 (171)
T 1juq_A 88 EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP-------E----E-AKIKDAYHMLKRQ-GIVQSDPP 154 (171)
T ss_dssp HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT-------T----C-HHHHHHHHHHHHT-TSCSSCCC
T ss_pred HHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcC-------C----C-cHHHHHHHHHHHC-CCCCCCCC
Confidence 355788899999988764 36789999999999998877631 1 1 2488887777776 7766 76
Q ss_pred CCcc
Q 009343 475 FSGD 478 (537)
Q Consensus 475 fssD 478 (537)
+..|
T Consensus 155 ~~~~ 158 (171)
T 1juq_A 155 IPVD 158 (171)
T ss_dssp BCCC
T ss_pred CCcc
Confidence 5543
No 107
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=57.62 E-value=5.2 Score=38.90 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=55.4
Q ss_pred ccCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 400 RILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMFG----CSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 400 rILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~A----CkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
--|+-.....+++.| |.-.++|++-.+...+=++.|+..+-... ..|++.++...|...|.--||.|.||+.+=|
T Consensus 134 vWldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yfa~~yGl~~~~ 213 (312)
T 2o1e_A 134 VWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYLAKEYGLKQVP 213 (312)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEEEESSCTTHHHHHHTTCEEEE
T ss_pred cccCHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEECCchHHHHHHCCCeEEE
Confidence 456777777777777 33456788877888888888887765433 3466666667788999999999999998655
Q ss_pred C
Q 009343 475 F 475 (537)
Q Consensus 475 f 475 (537)
+
T Consensus 214 ~ 214 (312)
T 2o1e_A 214 I 214 (312)
T ss_dssp C
T ss_pred e
Confidence 4
No 108
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=57.50 E-value=8.3 Score=36.59 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=55.5
Q ss_pred ccCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 400 RILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMF----GCSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 400 rILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~----ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
--|+-.....+++.| |.-.++|++-.+...+=+++|+..+-.. ...|++.++...|...|.--||.|.||+.+-|
T Consensus 118 ~Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~ 197 (284)
T 2prs_A 118 LWLSPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLG 197 (284)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTCCCCE
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECccHHHHHHHCCCeEeE
Confidence 456777777777777 3345678887777777788888766543 33566666777888999999999999998744
No 109
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=57.48 E-value=54 Score=25.49 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=15.5
Q ss_pred CCcCCccCCHHHHHHHHHhhC
Q 009343 395 DEFGNRILTKRSIQELVNQID 415 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqID 415 (537)
+.+++..|++..|..+++.++
T Consensus 18 D~~~~G~i~~~el~~~l~~~~ 38 (149)
T 2mys_C 18 DRTGDAKITASQVGDIARALG 38 (149)
T ss_pred CCCCCCcCcHHHHHHHHHHhC
Confidence 445667788888888888774
No 110
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=57.47 E-value=2.7 Score=32.60 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=22.9
Q ss_pred hhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 446 LAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 446 LAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
|...-+-+.|.+-++.+.||++||+.||-
T Consensus 30 l~~~g~lDSl~~velv~~lE~~fgi~i~~ 58 (80)
T 1dv5_A 30 LFETGLLDSMGTVQLLLELQSQFGVDAPV 58 (80)
T ss_dssp SSTTSSCCSHHHHHHHHHHTTTSCCCCCC
T ss_pred hhhccCcChHHHHHHHHHHHHHhCCcCCH
Confidence 33333377888889999999999999974
No 111
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.39 E-value=9.5 Score=34.32 Aligned_cols=50 Identities=8% Similarity=-0.002 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHH-----------HHHHHHHHHHH-----hhhhcCCC-CcchhhHHHHHhhc
Q 009343 418 ERLDPDVEDILVDIAED-----------FVESITMFGCS-----LAKHRKSD-TLEAKDILVHLERN 467 (537)
Q Consensus 418 e~LD~DVEELLLeIADD-----------FVDsVvs~ACk-----LAKHRKSd-TLEvKDVQLhLERn 467 (537)
..|++++.+.|.+.+.. .+.++++.++. ++...+.. +|+.+||.-+|++.
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 46999999999998843 25556666553 22222222 48888888887753
No 112
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=57.03 E-value=20 Score=31.31 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=40.1
Q ss_pred CccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDI-------AEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI-------ADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.-.++-..|.+-+..+ +...|++|.|=++|| +++||+.-+.|++. ++ ...+.+..+ --+|++
T Consensus 23 ~~~Vsae~L~eEfdef--Gi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts--~~--g~~pT~enL-~~FEhE 91 (101)
T 2keb_A 23 SMSASAQQLAEELQIF--GLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTS--TH--KVGLTSEIL-NSFEHE 91 (101)
T ss_dssp -CCCCHHHHHHHHHHH--TCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HT--CSBCCHHHH-HHHHHH
T ss_pred hhhccHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cC--CCCCCHHHH-HHHHHH
Confidence 3344545555555544 456788999999888 79999999999663 44 333555444 455554
No 113
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=56.69 E-value=0.99 Score=38.68 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 423 DVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 423 DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
++++.|.+|..+.++ +.....|-.--+-|.|++-+|.+.||++||+.|+-
T Consensus 30 ei~~~v~~il~e~l~--I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~ 79 (113)
T 2cgq_A 30 AINATIQRILRTDRG--ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISF 79 (113)
T ss_dssp HHHHHHHHHHTCCSC--CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHHhC--CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCH
Confidence 344444444443333 33334444456788899999999999999999874
No 114
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=56.04 E-value=9.3 Score=36.94 Aligned_cols=50 Identities=6% Similarity=-0.024 Sum_probs=34.7
Q ss_pred CHHHHHHHHHhhCCC--CCCCHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcCC
Q 009343 403 TKRSIQELVNQIDPS--ERLDPDVEDILVDIAEDF----VESITMFGCSLAKHRKS 452 (537)
Q Consensus 403 tKrKLqELVrqIDP~--e~LD~DVEELLLeIADDF----VDsVvs~ACkLAKHRKS 452 (537)
+.+...++++.+-.. ..++++..+.|.++++-| |+.+|..|+.+|-+|..
T Consensus 218 ~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 218 DLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp CHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455556666654322 347888888888888775 77888888888887643
No 115
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=55.77 E-value=36 Score=29.14 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=41.9
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHH-HHHHHHHH-----HHHHHHHH------------HHHHHHhhhhcCCCCcc
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPD-VEDILVDI-----AEDFVESI------------TMFGCSLAKHRKSDTLE 456 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~D-VEELLLeI-----ADDFVDsV------------vs~ACkLAKHRKSdTLE 456 (537)
+.+++..|++..|..+++.+. ..++.+ +.+++..+ .++|+.-+ +..++++.-..+...|+
T Consensus 67 D~d~~G~i~~~el~~~l~~lg--~~~~~~~~~~l~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is 144 (196)
T 3dtp_E 67 DQDKDGFISKNDIRATFDSLG--RLCTEQELDSMVAEAPGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKE 144 (196)
T ss_dssp CCSCSSBCCHHHHHHHHHTTS--CCCCHHHHHHHHTTSSSCCBHHHHHHHHHHCCCSSCCHHHHHHHHHTTCSSSSCCBH
T ss_pred CCCCCCcCCHHHHHHHHHHhC--CCCCHHHHHHHHHHccCCCcHHHHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCcCc
Confidence 345666788888888888764 233433 33333221 24555433 34455555555666788
Q ss_pred hhhHHHHHhhccCcc
Q 009343 457 AKDILVHLERNWNMT 471 (537)
Q Consensus 457 vKDVQLhLERnWNI~ 471 (537)
..++..+| .+|..
T Consensus 145 ~~El~~~l--~~g~~ 157 (196)
T 3dtp_E 145 ETLKRSLT--TWGEK 157 (196)
T ss_dssp HHHHHHHH--HSSSC
T ss_pred HHHHHHHH--HcCCC
Confidence 88887777 45543
No 116
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=55.68 E-value=13 Score=32.57 Aligned_cols=55 Identities=13% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHhhCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccC---cccCC
Q 009343 408 QELVNQIDPSERLDPDVE----DILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWN---MTLPG 474 (537)
Q Consensus 408 qELVrqIDP~e~LD~DVE----ELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWN---I~IPG 474 (537)
.+|+..+|- |+|++ |+|.+|||-+.. .|.+| |-+..++.++...|-+.|+ +.||-
T Consensus 12 ~~~~~~l~~----~~~~~~~~Pe~L~el~~~ig~-------~L~~~-Gi~~~~~ie~~~~L~~~~gG~~iYIPk 73 (129)
T 1rr7_A 12 DTILAHLDN----PAEDTSRFPALLAELNDLLRG-------ELSRL-GVDPAHSLEIVVAICKHLGGGQVYIPR 73 (129)
T ss_dssp -------------------CHHHHHHHHHHHHHH-------HHHHT-SSCTTSHHHHHHHHHHHHCSSCCCCCC
T ss_pred hHHHHHhcC----hHHHHHHhHHHHHHHHHHHHH-------HHHHc-CCCHHHHHHHHHHHHHHHCCeeEEeeC
Confidence 456666665 66666 888888876554 33344 3333444477777777776 44554
No 117
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=55.63 E-value=17 Score=27.84 Aligned_cols=64 Identities=11% Similarity=0.240 Sum_probs=40.9
Q ss_pred ccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 400 RILTKRSIQELVNQIDPSERLDPDVEDILVDIA--EDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 400 rILtKrKLqELVrqIDP~e~LD~DVEELLLeIA--DDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
..+++..|.+|++.+|....|+-+ |++.-+. .+ -..-+..++++.-..+...|+.+++...|..
T Consensus 5 ~~~~~~ei~~~~~~~D~~g~i~~~--eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~ 70 (109)
T 3fs7_A 5 DILSAKDIESALSSCQAADSFNYK--SFFSTVGLSSK-TPDQIKKVFGILDQDKSGFIEEEELQLFLKN 70 (109)
T ss_dssp GTSCHHHHHHHHHHTCSTTCCCHH--HHHHHHTCTTC-CHHHHHHHHHHHSTTCSSSBCHHHHHTTGGG
T ss_pred CcCCHHHHHHHHHhcCCCCcCcHH--HHHHHHhcCCC-cHHHHHHHHHHHCCCCCCeEeHHHHHHHHHH
Confidence 457899999999999977777754 2222221 11 1223445566655566777888888766655
No 118
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=55.55 E-value=18 Score=27.75 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.+++..|++|++.+|....|+-+---.++.+.++- ..-+..++++.-..+...|+.+++...|.+.
T Consensus 5 ~~t~~e~~~~~~~~d~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (108)
T 1rro_A 5 ILSAEDIAAALQECQDPDTFEPQKFFQTSGLSKMS-ASQVKDIFRFIDNDQSGYLDGDELKYFLQKF 70 (108)
T ss_dssp TSCHHHHHHHHHHTCSTTCCCHHHHHHHHSGGGSC-HHHHHHHHHHHCTTCSSEECTHHHHTGGGGT
T ss_pred cCCHHHHHHHHHHccCCCCcCHHHHHHHHhcCccc-HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 47899999999999977778754222222221111 2334455565555666778888887777653
No 119
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=55.16 E-value=12 Score=31.17 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=32.4
Q ss_pred HHHHHHhhCC-CCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q 009343 407 IQELVNQIDP-SERLDPDVEDILVDIA-------EDFVESITMFGCSL 446 (537)
Q Consensus 407 LqELVrqIDP-~e~LD~DVEELLLeIA-------DDFVDsVvs~ACkL 446 (537)
+++|..++|- +...+++|.|-|++|+ ||||++.+.|++..
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~ 52 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTST 52 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 5666666664 4577889999999985 99999999999984
No 120
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=54.89 E-value=67 Score=25.58 Aligned_cols=26 Identities=4% Similarity=0.061 Sum_probs=16.3
Q ss_pred HHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 441 MFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 441 s~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
..++++.-..+...|+..++.-+|..
T Consensus 86 ~~~F~~~D~d~~G~I~~~el~~~l~~ 111 (148)
T 1exr_A 86 IEAFKVFDRDGNGLISAAELRHVMTN 111 (148)
T ss_dssp HHHHHHHSTTCSSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 34555555556667778777766654
No 121
>3fi7_A LMO1076 protein; listeria monocytogenes, autolysin, N acetylglucosaminidase, peptidoglycan hydrolase, autoinhibition, GH73, hydrolase; 2.35A {Undefined}
Probab=54.65 E-value=13 Score=34.61 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHH------HHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 418 ERLDPDVEDILVDI------AEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 418 e~LD~DVEELLLeI------ADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
..|+.-|.+.+..+ .++||+.+...|.+++|..+-.. .+.=.|-+||-.||..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~FI~~i~~~A~~~~~~~gi~~-s~~laQa~lESgwG~s 68 (183)
T 3fi7_A 10 FSLEQNRDDAMAALASTPTFQQTFINSISTQAMDLCKKYNLYP-SVMIAQAALESNWGRS 68 (183)
T ss_dssp CCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHTTTTS
T ss_pred hHHHHhhhhhcccccCCCccHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHccCCCC
Confidence 34444444445444 67999999999999999888763 4555688999999754
No 122
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=54.64 E-value=33 Score=28.67 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=43.3
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH----------HHHHHHH-----------HHHHHHhhhhcCCC
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIA----------EDFVESI-----------TMFGCSLAKHRKSD 453 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIA----------DDFVDsV-----------vs~ACkLAKHRKSd 453 (537)
+.+++..|++..|.++++.++. .++++..+.|.+.+ +||+.-+ +..+++..-..+..
T Consensus 47 D~d~~G~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G 124 (204)
T 3e3r_A 47 DRDGSRSLDADEFRQGLAKLGL--VLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDG 124 (204)
T ss_dssp CTTCCSSBCHHHHHHHHHTTTC--CCCHHHHHHHHHHHCTTCSSSBCHHHHHHHTSCCCCHHHHHHHHHHHHHHCTTCSS
T ss_pred ccCCCCCcCHHHHHHHHHHcCC--CCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHhhcCchHHHHHHHHHHHhCcCCCC
Confidence 4567778888888888887743 34444333344333 3666533 45555555556666
Q ss_pred CcchhhHHHHHhh
Q 009343 454 TLEAKDILVHLER 466 (537)
Q Consensus 454 TLEvKDVQLhLER 466 (537)
.|+..++.-+|+.
T Consensus 125 ~I~~~El~~~l~~ 137 (204)
T 3e3r_A 125 VVTVDDLRGVYSG 137 (204)
T ss_dssp EECHHHHHHHCCC
T ss_pred eEeHHHHHHHHcc
Confidence 7777777766654
No 123
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=54.37 E-value=6.4 Score=37.71 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 401 ILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMF----GCSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 401 ILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~----ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-|+-+....+++.| |.-.++|++-.+...+=+++|+..+-.. ...|++.++...|...|.--||.|.||+.+-|
T Consensus 124 Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~ 202 (286)
T 3gi1_A 124 WTDPVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLG 202 (286)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHHHHHTTCEEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHCCCeEee
Confidence 36677777777777 3344677877777777778887776443 33456666777788899999999999998644
No 124
>2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP} PDB: 3k3t_A
Probab=54.31 E-value=7.4 Score=35.48 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCccc
Q 009343 431 IAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTL 472 (537)
Q Consensus 431 IADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~I 472 (537)
|.++||+.+...|.+++|.-+-.. .+-=.|-+||-.||-..
T Consensus 1 ~~~~FI~~~~~~A~~~~~~~gI~~-sv~lAQA~LESgwG~S~ 41 (170)
T 2zyc_A 1 MAQAFVDATWPQAAKAAQSLGVPA-HFLVAQAALETGWGKSQ 41 (170)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHTTTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHcCCCCCc
Confidence 468999999999999999888663 34445788999998543
No 125
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A
Probab=54.22 E-value=5 Score=40.44 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=51.1
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhccC----cccC-C-CCccc----ccccC------------CCCCchHHHHHH
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNWN----MTLP-G-FSGDE----IKTFR------------KPLVCDIHKERL 496 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnWN----I~IP-G-fssDE----IR~~R------------K~~pTEaHKQRM 496 (537)
+++..|.|-++|+-. |.-.+|+-.|++.+| |||| | +.+|| |..+- -..+.+.|-+++
T Consensus 153 ltTe~clLn~nRNP~-lsk~eiE~~L~~~LGv~kviWL~~G~l~~DdTdgHID~larFv~p~~v~~~~~~d~~d~~y~~~ 231 (330)
T 3hvm_A 153 LTNTQCLLEKNRNPH-LNQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSACEDKNDEHYTAL 231 (330)
T ss_dssp EEEHHHHTCTTTSTT-SCHHHHHHHHHHHHCCSEEEEECCCCCTTCCSSCCGGGTEEEEETTEEEEEECCCTTSTTHHHH
T ss_pred EEEeehhcCCCCCCC-CCHHHHHHHHHHHhCCCEEEEECCCCcCCCCCCccchheeEecCCCEEEEEcCCCCCCccHHHH
Confidence 456789999999987 789999999999998 6789 7 55554 11111 122445667888
Q ss_pred HHHHHHhhhhhhhc
Q 009343 497 AAIKKSVMATEVAS 510 (537)
Q Consensus 497 ALIRKsI~s~~~as 510 (537)
+.+++.++....+.
T Consensus 232 ~~~~~~L~~~~da~ 245 (330)
T 3hvm_A 232 KKMQEELKTFKKLD 245 (330)
T ss_dssp HHHHHHHHHCBCTT
T ss_pred HHHHHHHHhhhhcc
Confidence 88888888865443
No 126
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=53.93 E-value=3.3 Score=31.71 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=23.0
Q ss_pred hhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 448 KHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 448 KHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
..-|-+.|.+-++...||+.||+.||-
T Consensus 33 ~dlg~DSl~~vel~~~le~~fgi~i~~ 59 (81)
T 3gzm_A 33 KDLGADSLDLVELIMALEEKFNVTISD 59 (81)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred hhcCCCHHHHHHHHHHHHHHHCCCcCH
Confidence 455778888999999999999999874
No 127
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.65 E-value=12 Score=38.36 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=37.3
Q ss_pred CCCHHH-HHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 419 RLDPDV-EDILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 419 ~LD~DV-EELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
.+++|+ .+.|.+.++.| |..||..|+..|-.|+...|+.+|+.-.|++..
T Consensus 361 ~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 361 SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp CBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred CCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 344443 34455555544 789999999999999999999999998888753
No 128
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=53.50 E-value=31 Score=33.32 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHhhhhc------------CCCCcchhhHHHH
Q 009343 402 LTKRSIQELVNQID--PSERLDPDVEDILVDIAEDFVE----SITMFGCSLAKHR------------KSDTLEAKDILVH 463 (537)
Q Consensus 402 LtKrKLqELVrqID--P~e~LD~DVEELLLeIADDFVD----sVvs~ACkLAKHR------------KSdTLEvKDVQLh 463 (537)
.+.+...++++.+- -...|++++.+.|.++++.|.. .++..++..|..+ ....|+.+|+..+
T Consensus 282 p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~a 361 (389)
T 3vfd_A 282 PNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTES 361 (389)
T ss_dssp CCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHH
Confidence 35666666666552 2356888888888888777544 4455555444444 2335667777666
Q ss_pred Hhh
Q 009343 464 LER 466 (537)
Q Consensus 464 LER 466 (537)
|++
T Consensus 362 l~~ 364 (389)
T 3vfd_A 362 LKK 364 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 129
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=53.40 E-value=8.1 Score=36.72 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=55.6
Q ss_pred CccCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHhhhhcCCCCcchhhHHHHHhhccCcccC
Q 009343 399 NRILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMFG----CSLAKHRKSDTLEAKDILVHLERNWNMTLP 473 (537)
Q Consensus 399 nrILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~A----CkLAKHRKSdTLEvKDVQLhLERnWNI~IP 473 (537)
---|+-.....+++.| |.-.++|++-.+...+=++.|+..+-..- .+|+..++...|...|.--||.|.||+.+=
T Consensus 120 H~Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~ 199 (284)
T 3cx3_A 120 HTWLDPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSYLAKRFGLNQL 199 (284)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCEEEEESCCHHHHHHTTCCEE
T ss_pred CcccCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHcCCEEe
Confidence 3456777777777777 33456788877777777888887665433 346666677788899999999999999865
Q ss_pred CC
Q 009343 474 GF 475 (537)
Q Consensus 474 Gf 475 (537)
|+
T Consensus 200 ~~ 201 (284)
T 3cx3_A 200 GI 201 (284)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 130
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=52.99 E-value=25 Score=25.37 Aligned_cols=20 Identities=5% Similarity=0.235 Sum_probs=12.6
Q ss_pred CcCCccCCHHHHHHHHHhhC
Q 009343 396 EFGNRILTKRSIQELVNQID 415 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqID 415 (537)
.+++..|++..|..+++.+.
T Consensus 14 ~~~~G~i~~~el~~~l~~~g 33 (78)
T 1k9u_A 14 TNGDGKISLSELTDALRTLG 33 (78)
T ss_dssp TTCSSEECHHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHhC
Confidence 34555667777777776664
No 131
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=52.68 E-value=23 Score=31.32 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhCCCCCCCHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 009343 404 KRSIQELVNQIDPSERLDPD-----------VEDILVDIAEDFVESITMFGCSLAKHRKS 452 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~D-----------VEELLLeIADDFVDsVvs~ACkLAKHRKS 452 (537)
.++|.+|++.+.....||+. -.|++.+|.+.|+++.-..-..|.+.-..
T Consensus 7 ~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~ 66 (153)
T 3us6_A 7 RRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQ 66 (153)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677777777666666642 24678889999999987766666655443
No 132
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=52.01 E-value=50 Score=26.17 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=39.7
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH----------HHHHHHHHH------------HHHHHhhhhcCC
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI----------AEDFVESIT------------MFGCSLAKHRKS 452 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI----------ADDFVDsVv------------s~ACkLAKHRKS 452 (537)
+.+++..|++..|..+++.++ ..++++..+.|.+. .++|+.-+. ..++++.-..+.
T Consensus 33 D~~~~G~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~ 110 (161)
T 3fwb_A 33 DMNNDGFLDYHELKVAMKALG--FELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHT 110 (161)
T ss_dssp CTTSSSEECHHHHHHHHHHTT--CCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHHHHTCCHHHHHHHHHHHHCTTCS
T ss_pred CCCCCCcCcHHHHHHHHHHcC--CCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCCC
Confidence 445666788888888888763 23444433333333 245654443 334444444455
Q ss_pred CCcchhhHHHHHhh
Q 009343 453 DTLEAKDILVHLER 466 (537)
Q Consensus 453 dTLEvKDVQLhLER 466 (537)
..|+..++.-+|+.
T Consensus 111 G~i~~~el~~~l~~ 124 (161)
T 3fwb_A 111 GKISIKNLRRVAKE 124 (161)
T ss_dssp SEECHHHHHHHHHH
T ss_pred CeEeHHHHHHHHHH
Confidence 66777777776664
No 133
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=51.88 E-value=15 Score=28.13 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=43.4
Q ss_pred ccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 400 RILTKRSIQELVNQIDPSERLDPDVEDILVDIA--EDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 400 rILtKrKLqELVrqIDP~e~LD~DVEELLLeIA--DDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.++++..|.+|++.+|....|+-+ |++.-+. .+ -+.-+..++++.-..+...|+.+++...|...
T Consensus 4 ~~~s~~ei~~~~~~~d~~g~i~~~--eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 70 (109)
T 5pal_A 4 KVLKADDINKAISAFKDPGTFDYK--RFFHLVGLKGK-TDAQVKEVFEILDKDQSGFIEEEELKGVLKGF 70 (109)
T ss_dssp GTSCHHHHHHHHHHTCSTTCCCHH--HHHHHHTCTTC-CHHHHHHHHHHHCTTCSSEECHHHHHTHHHHH
T ss_pred CcCCHHHHHHHHHHhCCCCcCcHH--HHHHHHhhccC-cHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 468999999999999987777743 3332221 11 12334556666666677788999988877764
No 134
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=51.52 E-value=13 Score=31.16 Aligned_cols=14 Identities=7% Similarity=0.608 Sum_probs=7.0
Q ss_pred hhHHHHHhhccCcc
Q 009343 458 KDILVHLERNWNMT 471 (537)
Q Consensus 458 KDVQLhLERnWNI~ 471 (537)
.++...|.+.|++.
T Consensus 190 ~~f~~~~~~~w~~~ 203 (204)
T 3e3r_A 190 EEFVAMMTSAWQLK 203 (204)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCCC
Confidence 34555555556554
No 135
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.46 E-value=8.7 Score=40.12 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=41.0
Q ss_pred HHHHHhhCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 408 QELVNQIDPSERLDPDV-EDILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 408 qELVrqIDP~e~LD~DV-EELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.++++..-....+++|| .+.|.+.++.| |..||..|+.+|-.++...|+.+|+.-.|+|-
T Consensus 359 ~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 359 KKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERV 423 (437)
T ss_dssp HHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 34444333334454443 34455555543 78899999999999999999999999998874
No 136
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=51.23 E-value=24 Score=26.98 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=43.3
Q ss_pred ccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 400 RILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 400 rILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
..+++..|.+|++.+|.+..|+-+---.++.+..+- ..-+..++++.-..+...|+.+|+.-.|.+.
T Consensus 5 ~~~~~~e~~~~~~~~d~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 71 (109)
T 1bu3_A 5 GILADADVAAALKACEAADSFNYKAFFAKVGLTAKS-ADDIKKAFFVIDQDKSGFIEEDELKLFLQVF 71 (109)
T ss_dssp CSSCHHHHHHHHHHTCSTTCCCHHHHHHHHTGGGSC-HHHHHHHHHHHCTTCSSSEEHHHHHTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCcCcHHHHHHHHHcChhh-HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 357899999999999977777744211111111111 2334566666666677789999998777764
No 137
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=51.03 E-value=3.7 Score=31.42 Aligned_cols=26 Identities=15% Similarity=0.572 Sum_probs=22.1
Q ss_pred hcCCCCcchhhHHHHHhhccCcccCC
Q 009343 449 HRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|-+.|.+-++...||+.||+.||-
T Consensus 36 dlG~DSl~~vel~~~le~~fgi~i~~ 61 (82)
T 2qnw_A 36 DLDADSLDSVELVMAFEEKFGVSIPD 61 (82)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred ccCCcHHHHHHHHHHHHHHHCCcCCH
Confidence 45777888899999999999999874
No 138
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=50.85 E-value=20 Score=27.43 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.+++..|.+|++.+|.+..|+-+---.++.+..+- ...+..++++.-..+...|+.+|+...|...
T Consensus 5 ~~t~~e~~~~~~~~d~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (109)
T 1rwy_A 5 LLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKS-ADDVKKVFHILDKDKSGFIEEDELGSILKGF 70 (109)
T ss_dssp HSCHHHHHHHHHTTCSTTCCCHHHHHHHHTGGGSC-HHHHHHHHHHHSTTCSSEECHHHHHTHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCcEeHHHHHHHHhcCcch-HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHH
Confidence 36889999999999977777754222222211111 2344566666666677789999998888764
No 139
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.79 E-value=1.8 Score=34.78 Aligned_cols=25 Identities=20% Similarity=0.520 Sum_probs=21.4
Q ss_pred cCCCCcchhhHHHHHhhccCcccCC
Q 009343 450 RKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-+-|.|++-+|...||++||+.||-
T Consensus 45 lG~DSL~~vel~~~le~~fgi~i~~ 69 (99)
T 2dnw_A 45 LGLDSLDQVEIIMAMEDEFGFEIPD 69 (99)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 4667788889999999999999873
No 140
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=50.43 E-value=58 Score=26.45 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhccCc
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNWNM 470 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI 470 (537)
.+..+.++.-..+...|+.+++.-.|.. +|+
T Consensus 71 ~~~~~F~~~D~d~~G~i~~~el~~~l~~-~g~ 101 (165)
T 1k94_A 71 AWKENFMTVDQDGSGTVEHHELRQAIGL-MGY 101 (165)
T ss_dssp HHHHHHHHHCTTCCSBCCHHHHHHHHHH-TTC
T ss_pred HHHHHHHHhCCCCCceECHHHHHHHHHH-hCC
Confidence 3455666666667778999999888875 343
No 141
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=50.08 E-value=40 Score=28.58 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=47.2
Q ss_pred CCcCCccCCHHHHHHHHHhhCCC---CCCCHHHHHHHHHHH----------HHHHHHH-----HHHHHHhhhhcCCCCcc
Q 009343 395 DEFGNRILTKRSIQELVNQIDPS---ERLDPDVEDILVDIA----------EDFVESI-----TMFGCSLAKHRKSDTLE 456 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~---e~LD~DVEELLLeIA----------DDFVDsV-----vs~ACkLAKHRKSdTLE 456 (537)
+.+++..|++..|.++++.+... ..++++..+.|++.+ +||+.-+ +..++++.-..+...|+
T Consensus 42 D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~ 121 (198)
T 1juo_A 42 VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVD 121 (198)
T ss_dssp HHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHHHHHHTTCTTCCSEEC
T ss_pred hCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHHHHHHHhCCCCCCcCC
Confidence 45677789999999999988642 245554444444444 3566533 34455555556677899
Q ss_pred hhhHHHHHhh
Q 009343 457 AKDILVHLER 466 (537)
Q Consensus 457 vKDVQLhLER 466 (537)
.+++.-.|+.
T Consensus 122 ~~el~~~l~~ 131 (198)
T 1juo_A 122 PQELQKALTT 131 (198)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888875
No 142
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.94 E-value=9.9 Score=39.96 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHHHHhhCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 406 SIQELVNQIDPSERLDPDV-EDILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DV-EELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.-.++++..-....++++| .+.|.++++.| |..||..|+.+|-.++...|+.+|+.-.|+|-
T Consensus 384 ~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 384 GRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 3334444333334444443 34556665544 78899999999988899999999999988874
No 143
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=49.20 E-value=42 Score=28.89 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=18.1
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILV 429 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLL 429 (537)
+.+++..|++..|.++++.++. ..-++++++++.
T Consensus 67 D~d~~G~Is~~El~~~l~~~g~-~~~~~~~~~l~~ 100 (197)
T 3pm8_A 67 DVDNSGTLSSQEILDGLKKIGY-QKIPPDIHQVLR 100 (197)
T ss_dssp CTTCSSEECHHHHHHHHHHHC-----CHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 3456667777777777777632 223344444443
No 144
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=49.14 E-value=88 Score=25.45 Aligned_cols=27 Identities=4% Similarity=-0.011 Sum_probs=18.1
Q ss_pred HHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 440 TMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 440 vs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+..+++..-..+...|+..++.-.|..
T Consensus 86 ~~~~F~~~D~d~~G~I~~~E~~~~l~~ 112 (179)
T 2f2o_A 86 IREAFRVFDKDGNGYISAAELRHVMTN 112 (179)
T ss_dssp HHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 445555555556677888888777765
No 145
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=49.09 E-value=60 Score=25.71 Aligned_cols=29 Identities=3% Similarity=-0.043 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 438 SITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 438 sVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
..+..+.++.-..+...|+..++.-.|..
T Consensus 96 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 124 (162)
T 1top_A 96 EELANCFRIFDKNADGFIDIEELGEILRA 124 (162)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 33445555555566777888888777754
No 146
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=48.99 E-value=32 Score=27.66 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=8.7
Q ss_pred cCCccCCHHHHHHHHHhh
Q 009343 397 FGNRILTKRSIQELVNQI 414 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqI 414 (537)
+++..|++..|.++++.+
T Consensus 48 d~~G~I~~~El~~~l~~l 65 (100)
T 2lv7_A 48 DGNGFISKQELGTAMRSL 65 (100)
T ss_dssp SCSSCBCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 444444555555555444
No 147
>1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A*
Probab=48.79 E-value=24 Score=31.76 Aligned_cols=79 Identities=13% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC---CCccccccc-CCC--CCchHHHHHHH-
Q 009343 425 EDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG---FSGDEIKTF-RKP--LVCDIHKERLA- 497 (537)
Q Consensus 425 EELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG---fssDEIR~~-RK~--~pTEaHKQRMA- 497 (537)
+|.|..|+|+|.+.|...- .|+..-.. .+.....-+|..-|-.++-| |.+..++.. ... ..+++|..|..
T Consensus 52 ~~~I~~lVd~FY~rv~~Dp-~l~~~F~~--~D~~~~~~kl~~Fl~~~lGGp~~Y~g~~m~~~H~~l~~~I~~~~fd~Wl~ 128 (164)
T 1dly_A 52 REAVEAAVDKFYNKIVADP-TVSTYFSN--TDMKVQRSKQFAFLAYALGGASEWKGKDMRTAHKDLVPHLSDVHFQAVAR 128 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCT-TTGGGGTT--SCHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTTCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCh-HHHHhcCC--CCHHHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHhhcCCCCHHHHHHHHH
Confidence 6778899999999987743 34443332 13333444444444444433 334444422 234 47777777754
Q ss_pred HHHHHhhhh
Q 009343 498 AIKKSVMAT 506 (537)
Q Consensus 498 LIRKsI~s~ 506 (537)
+++++++..
T Consensus 129 ~~~~aL~e~ 137 (164)
T 1dly_A 129 HLSDTLTEL 137 (164)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888888764
No 148
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=48.49 E-value=27 Score=30.36 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhCCCCCCCHH-----------H-HHHHHHHHHHHHHHHHHHHHHhhh
Q 009343 404 KRSIQELVNQIDPSERLDPD-----------V-EDILVDIAEDFVESITMFGCSLAK 448 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~D-----------V-EELLLeIADDFVDsVvs~ACkLAK 448 (537)
++.|.+|++.+.....||++ - +|++.+|.+.|++++-..--.|.+
T Consensus 7 ~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~ 63 (149)
T 1yvi_A 7 RDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIAT 63 (149)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777776666666654 1 345566666777776544444433
No 149
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=48.47 E-value=39 Score=29.88 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHhhCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCc
Q 009343 401 ILTKRSIQELVNQIDPS---ERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSG 477 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~---e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfss 477 (537)
|-+|+-|.+|++-|.+. ...+.+|.+-+|+|..+|-+.. + .+ -+++|+---|++. |+.+|.-.-
T Consensus 77 vas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f----~-------~~-p~i~~~y~~Lk~~-G~~Fp~~~~ 143 (148)
T 1mhq_A 77 VAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF----P-------ED-IKIRDAYQMLKKQ-GIIKQDPKL 143 (148)
T ss_dssp HTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC----T-------TC-HHHHHHHHHHHHT-TSSCSCCCC
T ss_pred HhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc----C-------CC-chHHHHHHHHHHc-CCCCCCCCC
Confidence 45788888999888764 3578899999999988887652 1 11 2378887777776 888887543
No 150
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=48.42 E-value=9.8 Score=39.40 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=40.4
Q ss_pred HHHHHhhCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 408 QELVNQIDPSERLDPDV-EDILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 408 qELVrqIDP~e~LD~DV-EELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.++++..-....+++++ .+.|.+....| |.+++..|+.+|..++.+.|+.+|+.-.|++.
T Consensus 192 ~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 33444332333455444 34444444333 57889999999999998999999999999885
No 151
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=48.39 E-value=2 Score=35.60 Aligned_cols=25 Identities=8% Similarity=0.413 Sum_probs=22.1
Q ss_pred cCCCCcchhhHHHHHhhccCcccCC
Q 009343 450 RKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-|-|.|++-+|.+.||+.||+.||-
T Consensus 53 lGlDSL~~veLv~~lE~~fgI~i~~ 77 (105)
T 2jq4_A 53 AGLSSFASVQLMLGIEEAFDIEFPD 77 (105)
T ss_dssp GTCCHHHHHHHHHHHHHHHSCCCCH
T ss_pred cCCCHHHHHHHHHHHHHHHCCCcCH
Confidence 4678899999999999999999873
No 152
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=48.03 E-value=23 Score=27.12 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIA--EDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIA--DDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
.+++..|.+|++.+|....|+-+ |++.-+. ++- ..-+..++++.-..+...|+.+|+...|.+.
T Consensus 6 ~~t~~e~~~~~~~~d~~g~i~~~--ef~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 71 (110)
T 1pva_A 6 LLKADDIKKALDAVKAEGSFNHK--KFFALVGLKAMS-ANDVKKVFKAIDADASGFIEEEELKFVLKSF 71 (110)
T ss_dssp HSCHHHHHHHHHHTCSTTCCCHH--HHHHHHTCTTSC-HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred cCCHHHHHHHHHhcCCCCcCcHH--HHHHHHccCcch-HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 36889999999999977777753 3322221 111 2334556666666677788899988777664
No 153
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=47.90 E-value=26 Score=31.52 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHH
Q 009343 402 LTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHL 464 (537)
Q Consensus 402 LtKrKLqELVrqI--DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhL 464 (537)
++.+.+.++++++ ..+..+|+++.+.|.+.++.-+..++...++++.. ...|+.+||.-.+
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp CCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 4567777777765 23457899999988888776666666555555543 2346666664443
No 154
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=47.59 E-value=65 Score=22.12 Aligned_cols=43 Identities=5% Similarity=-0.014 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 424 VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 424 VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
...+|..+...+-+..+...++.+-..+...|+..+..-.+.+
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~ 64 (66)
T 3li6_A 22 VKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence 4444444444455555555666666666778888888666543
No 155
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=47.57 E-value=69 Score=25.45 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=21.0
Q ss_pred CcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 009343 396 EFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI 431 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI 431 (537)
.+++..|++..|..+++.++. .++++..+.|+..
T Consensus 25 ~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~ 58 (158)
T 2jnf_A 25 PEGSGRVSTDQIGIILEVLGI--QQTKSTIRQLIDE 58 (158)
T ss_dssp SSSCSSEEHHHHHHHHHHTTC--SCSHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHHHH
Confidence 456677888888888887643 3444443444443
No 156
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=47.38 E-value=12 Score=35.27 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=29.7
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCc
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSG 477 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfss 477 (537)
+...||+.|-..| +.|....+.--|++-+.+..|.+..
T Consensus 161 ~as~ACr~AIk~g-~~Ls~~Em~~Ll~~L~~~~~P~~CP 198 (220)
T 3ncv_A 161 LATMSCHGSIRAG-RRLTLPEMNALLRDMENTPRSNQCN 198 (220)
T ss_dssp HHHHTTCSSSCSS-CCCCHHHHHHHHHHHHTSTTTTBCT
T ss_pred HHHHHHHhhhhcC-CCCCHHHHHHHHHHHHhCCCCCcCC
Confidence 4578899887665 5688888888888888888887664
No 157
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=47.32 E-value=91 Score=24.24 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=20.1
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI 431 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI 431 (537)
+.+++..|++..|..+++.+. ..++++..+.|...
T Consensus 16 D~d~~G~i~~~el~~~l~~~~--~~~~~~~~~~l~~~ 50 (142)
T 2bl0_C 16 DSERTGFITKEGLQTVLKQFG--VRVEPAAFNEMFNE 50 (142)
T ss_dssp CTTCSSEEEHHHHHHHHHHHT--CCCCHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHH
Confidence 345566778888888877763 23444433333333
No 158
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=47.27 E-value=15 Score=28.70 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 436 VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 436 VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
|..||..|+..|-+|+...|+.+|+.-.|++.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 66788899999999999999999999999885
No 159
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=46.50 E-value=51 Score=27.60 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=21.1
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI 431 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI 431 (537)
+.+++..|++..|..+++.++-. +.++++++..+
T Consensus 49 D~d~~G~i~~~El~~~l~~~g~~---~~~~~~~~~~~ 82 (180)
T 3mse_B 49 DTNHNGSLSHREIYTVLASVGIK---KWDINRILQAL 82 (180)
T ss_dssp CTTCSSSEEHHHHHHHHHHTTCC---HHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHcCCC---HHHHHHHHHHh
Confidence 45666778888888888877532 24444444433
No 160
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=45.82 E-value=4.8 Score=30.04 Aligned_cols=26 Identities=15% Similarity=0.472 Sum_probs=21.2
Q ss_pred hcCCCCcchhhHHHHHhhccCcccCC
Q 009343 449 HRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|-+.|.+-++...||+.||+.||-
T Consensus 34 ~lG~DSl~~~~l~~~le~~fgi~i~~ 59 (80)
T 1x3o_A 34 DLGADSLDTVELIMGLEDEFGLEISD 59 (80)
T ss_dssp TTCCCHHHHHHHHHHHHHHHCCCCCH
T ss_pred hcCccHHHHHHHHHHHHHHHCCCcCH
Confidence 34667778888999999999999874
No 161
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=45.67 E-value=55 Score=26.47 Aligned_cols=49 Identities=8% Similarity=0.130 Sum_probs=29.5
Q ss_pred CCccCCHHHHHHHHHhhCCCC---CC-CHHHHHHHHHH---------HHHHHHHHHHHHHHh
Q 009343 398 GNRILTKRSIQELVNQIDPSE---RL-DPDVEDILVDI---------AEDFVESITMFGCSL 446 (537)
Q Consensus 398 ~nrILtKrKLqELVrqIDP~e---~L-D~DVEELLLeI---------ADDFVDsVvs~ACkL 446 (537)
+...|++..|..+++..-+.. .+ +.+|+++|.++ .+|||.-+...+..+
T Consensus 27 ~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~~~~~ 88 (100)
T 3nxa_A 27 VKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGITGPI 88 (100)
T ss_dssp CTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHHHGGG
T ss_pred CCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 357899999999998753321 12 34566666554 357776655544433
No 162
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=45.42 E-value=23 Score=31.29 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCcccccccCCCCCchHH
Q 009343 422 PDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIH 492 (537)
Q Consensus 422 ~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfssDEIR~~RK~~pTEaH 492 (537)
++-++++-|+||=| -...-|..+++ |.+.||.-.|+|..++ .|-+| +..|+..+.+.|
T Consensus 55 ~d~~el~~E~ADLl-----YHllVlL~~~g---v~l~dV~~eL~~R~~~----sg~~e-K~~R~~~~~~~~ 112 (116)
T 2a7w_A 55 KDKLHLVREVADLW-----FHTMVLLTYHG---LRPEDVVMELHRREGI----SGLDE-KASRKPTALEHH 112 (116)
T ss_dssp TCHHHHHHHHHHHH-----HHHHHHHHHTT---CCHHHHHHHHHHHCC-----------------------
T ss_pred CCHHHHHHHHHHHH-----HHHHHHHHHcC---CCHHHHHHHHHHHhcc----cCcch-hccCCCchhhhc
Confidence 44555666666532 23333333444 6799999999999876 22233 444555555554
No 163
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=45.26 E-value=20 Score=32.69 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCc
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSG 477 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfss 477 (537)
+.+.||+.|-..| +.|....+.--|++-+.+..|.+..
T Consensus 138 ~~~~ACr~AIk~g-~~Ls~~Em~~Ll~~L~~~~~p~~Cp 175 (197)
T 3kdg_A 138 AIMMSCKGSIKAN-RHLRNDEIKALLDDLRSTSDPFTCP 175 (197)
T ss_dssp HHHHHHCC----C-CCCCHHHHHHHHHHHHHSSCTTBCT
T ss_pred HHHHhhHhhccCC-CCCCHHHHHHHHHHHHcCCCCCcCC
Confidence 5578999998666 5688888877787777777776654
No 164
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=45.08 E-value=23 Score=27.12 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=19.0
Q ss_pred ccCCHHHHHHHHHhhCCCCCCCH
Q 009343 400 RILTKRSIQELVNQIDPSERLDP 422 (537)
Q Consensus 400 rILtKrKLqELVrqIDP~e~LD~ 422 (537)
..+++..|.+|++.+|....|+-
T Consensus 4 ~~~~~~e~~~l~~~~d~~g~i~~ 26 (108)
T 2kyc_A 4 DILSPSDIAAALRDCQAPDSFSP 26 (108)
T ss_dssp SSSCHHHHHHHHTTSCSTTTCCH
T ss_pred ccCCHHHHHHHHHHcCCCCcCCH
Confidence 35789999999999997777773
No 165
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=44.54 E-value=19 Score=32.53 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHH-H---------HHHHHHhhhhcCC
Q 009343 404 KRSIQELVNQIDPSERLDPDVEDILVDIAEDFVES-I---------TMFGCSLAKHRKS 452 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDs-V---------vs~ACkLAKHRKS 452 (537)
.+.+.+|+++++-.. +++.+.+.++||+..+| | +.|++.||+|-..
T Consensus 55 ~~~f~~m~~~L~it~---~~a~~~F~~Va~elF~dGi~NWGRIVaLfaFgg~la~~~~~ 110 (157)
T 4hw4_A 55 ETAFQGMLRKLDIKN---EDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKT 110 (157)
T ss_dssp HHHHHHHHHHHCCCS---HHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC---chHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 345778888876543 35566788999985444 3 7899999987654
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.49 E-value=27 Score=31.47 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHH
Q 009343 402 LTKRSIQELVNQID--PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVH 463 (537)
Q Consensus 402 LtKrKLqELVrqID--P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLh 463 (537)
++...+.++++++- .+..+|+++.+.|.++++--+..++...++++... ..|+.+||.-.
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~ 227 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKI 227 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHH
Confidence 46777777777652 34568999999999988765555555555554332 24555555433
No 167
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=44.28 E-value=3.6 Score=31.14 Aligned_cols=26 Identities=19% Similarity=0.593 Sum_probs=21.9
Q ss_pred hcCCCCcchhhHHHHHhhccCcccCC
Q 009343 449 HRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|-+.|.+-++...||+.||+.||-
T Consensus 35 dlG~DSl~~~el~~~le~~fgi~i~~ 60 (81)
T 2lol_A 35 DLKADSLDTVELMMAIEVEYGIDIPD 60 (81)
T ss_dssp HTTCCHHHHHHHHHHHHHHHCCCCCG
T ss_pred hcCCcHHHHHHHHHHHHHHHCCCCCH
Confidence 34777788889999999999999874
No 168
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.89 E-value=35 Score=34.37 Aligned_cols=65 Identities=9% Similarity=0.154 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhhCC------CCCCCHHHHHHHHHHHHHHHH---------HHHHHHHHhhhhcCCC-CcchhhHHHHHh
Q 009343 402 LTKRSIQELVNQIDP------SERLDPDVEDILVDIAEDFVE---------SITMFGCSLAKHRKSD-TLEAKDILVHLE 465 (537)
Q Consensus 402 LtKrKLqELVrqIDP------~e~LD~DVEELLLeIADDFVD---------sVvs~ACkLAKHRKSd-TLEvKDVQLhLE 465 (537)
.+...+.++++.+-. +..|++++.+.+.++++.|+. +++..+|..++.+... .-+++++.-.|+
T Consensus 325 p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~ 404 (468)
T 3pxg_A 325 PSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLD 404 (468)
T ss_dssp CCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 367778888887643 467999999999999998763 5677788877776543 345666655554
Q ss_pred h
Q 009343 466 R 466 (537)
Q Consensus 466 R 466 (537)
+
T Consensus 405 ~ 405 (468)
T 3pxg_A 405 E 405 (468)
T ss_dssp H
T ss_pred H
Confidence 4
No 169
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=43.86 E-value=1.3e+02 Score=24.54 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=40.9
Q ss_pred CcCCccCCHHHHHHHHHhhCCC---CCCCHHHHHHHHHHH----------HHHHH-----HHHHHHHHhhhhcCCCCcch
Q 009343 396 EFGNRILTKRSIQELVNQIDPS---ERLDPDVEDILVDIA----------EDFVE-----SITMFGCSLAKHRKSDTLEA 457 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP~---e~LD~DVEELLLeIA----------DDFVD-----sVvs~ACkLAKHRKSdTLEv 457 (537)
.+++..|++..|.++++.+... ..+.++..+.|...+ +||+. ..+..+.++.-..+...|+.
T Consensus 12 ~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~ 91 (167)
T 1gjy_A 12 AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDP 91 (167)
T ss_dssp CCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHHHHHHHHHHHCTTCCSEECH
T ss_pred cCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCH
Confidence 4455566777777777766432 133333333333332 24443 23445566666667778999
Q ss_pred hhHHHHHhh
Q 009343 458 KDILVHLER 466 (537)
Q Consensus 458 KDVQLhLER 466 (537)
.++.-.|+.
T Consensus 92 ~el~~~l~~ 100 (167)
T 1gjy_A 92 QELQKALTT 100 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999888875
No 170
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=43.42 E-value=43 Score=25.39 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=13.5
Q ss_pred CCcCCccCCHHHHHHHHHhhC
Q 009343 395 DEFGNRILTKRSIQELVNQID 415 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqID 415 (537)
+.+++..|++..+.++++.+.
T Consensus 10 D~~~~g~i~~~e~~~~l~~~~ 30 (134)
T 1jfj_A 10 DVNGDGAVSYEEVKAFVSKKR 30 (134)
T ss_dssp CTTCSSEEEHHHHHHHHHTTC
T ss_pred CCCCCCcCCHHHHHHHHHHcC
Confidence 345556677777777777654
No 171
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=42.56 E-value=19 Score=33.51 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHH--HHHHHHHHHHHHhhh----hcCCCCc-chhhHHHHHhhccCcccCCCCcccccccCC
Q 009343 417 SERLDPDVEDILVDIAE--DFVESITMFGCSLAK----HRKSDTL-EAKDILVHLERNWNMTLPGFSGDEIKTFRK 485 (537)
Q Consensus 417 ~e~LD~DVEELLLeIAD--DFVDsVvs~ACkLAK----HRKSdTL-EvKDVQLhLERnWNI~IPGfssDEIR~~RK 485 (537)
+..|++|+.+.|.+.+. .-+.++++.+|...+ ..+...| +++||+-++...||+.. ++|+..++
T Consensus 183 ~~~l~~~~l~~l~~~~g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~~~~-----~~i~s~~~ 253 (324)
T 1l8q_A 183 NLELRKEVIDYLLENTKNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYAVKV-----EDILSDKR 253 (324)
T ss_dssp TCCCCHHHHHHHHHHCSSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH-----HHHSSCCC
T ss_pred CCCCCHHHHHHHHHhCCCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhCCCH-----HHHhcCCC
Confidence 46799999888887650 113445555555410 0122346 78899999999888542 45555443
No 172
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=42.48 E-value=16 Score=29.48 Aligned_cols=70 Identities=9% Similarity=0.028 Sum_probs=38.1
Q ss_pred CcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH--------HHHHHHHH--------------HHHHHHhhhhcCCC
Q 009343 396 EFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI--------AEDFVESI--------------TMFGCSLAKHRKSD 453 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI--------ADDFVDsV--------------vs~ACkLAKHRKSd 453 (537)
.+++..|++..|..+++.+... .-+.++++++..+ .++|+.-+ +..++++.-..+..
T Consensus 22 ~d~~G~i~~~el~~~l~~lg~~-~~~~~~~~l~~~~d~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G 100 (159)
T 2ovk_C 22 DGRDGDVDAAKVGDLLRCLGMN-PTEAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQG 100 (159)
T ss_dssp TTSSSEEEGGGHHHHHHHTTCC-CCHHHHHHTTCCSSTTSCEEEHHHHHHHHHHHTTCSTTCCHHHHHHHHHHTCTTSSS
T ss_pred CCCCCCCcHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhccCCCcHHHHHHHHHHHCCCCCC
Confidence 4556677777888888776432 1122333333222 24454433 34455555445566
Q ss_pred CcchhhHHHHHhh
Q 009343 454 TLEAKDILVHLER 466 (537)
Q Consensus 454 TLEvKDVQLhLER 466 (537)
.|+..++.-.|.+
T Consensus 101 ~I~~~El~~~l~~ 113 (159)
T 2ovk_C 101 LISSAEIRNVLKM 113 (159)
T ss_dssp EECHHHHHHHHHH
T ss_pred cCcHHHHHHHHHH
Confidence 6777777766664
No 173
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=41.94 E-value=41 Score=27.45 Aligned_cols=79 Identities=10% Similarity=0.176 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC---CCcccccc-cCCCCCchHHHHHHH-HH
Q 009343 425 EDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG---FSGDEIKT-FRKPLVCDIHKERLA-AI 499 (537)
Q Consensus 425 EELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG---fssDEIR~-~RK~~pTEaHKQRMA-LI 499 (537)
|+.|..|+|+|.+.|... -.|+..-.. .+.....-+|..-|-..+-| |.+..++. -.....+++|..|.. ++
T Consensus 9 ~~~i~~lv~~FY~~v~~d-p~l~~~F~~--~d~~~~~~~l~~fl~~~~gGp~~Y~g~~m~~~H~~~~I~~~~f~~wl~~~ 85 (116)
T 1dlw_A 9 QAAVQAVTAQFYANIQAD-ATVATFFNG--IDMPNQTNKTAAFLCAALGGPNAWTGRNLKEVHANMGVSNAQFTTVIGHL 85 (116)
T ss_dssp HHHHHHHHHHHHHHHHTC-TTTGGGGTT--CCHHHHHHHHHHHHHHHTTCSSCCCSCCHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHhcCC--CCHHHHHHHHHHHHHHHhCCCccCCCcCHHHHhcCCCcCHHHHHHHHHHH
Confidence 677899999999998774 344443322 23333444444444444433 43444432 223456777777754 88
Q ss_pred HHHhhhh
Q 009343 500 KKSVMAT 506 (537)
Q Consensus 500 RKsI~s~ 506 (537)
+++++..
T Consensus 86 ~~al~~~ 92 (116)
T 1dlw_A 86 RSALTGA 92 (116)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888764
No 174
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=41.39 E-value=66 Score=29.41 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=39.7
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKS 452 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKS 452 (537)
.|+.|+..-++..-++.|+-+++.+=-++|...|-....+.|+....
T Consensus 113 ~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~~ 159 (201)
T 3k9o_A 113 SLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVS 159 (201)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccccc
Confidence 46677776688889999999999999999999999999999986443
No 175
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=41.37 E-value=69 Score=27.58 Aligned_cols=63 Identities=8% Similarity=0.181 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCC--CCCCCHH-HHHHHHHHH-----HH-HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 404 KRSIQELVNQIDP--SERLDPD-VEDILVDIA-----ED-FVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 404 KrKLqELVrqIDP--~e~LD~D-VEELLLeIA-----DD-FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
..+|.++.+.+|. ...|+.+ ...+|..+. ++ -.+.++...++.+-..+...|+..+..-.|.+
T Consensus 92 ~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 163 (211)
T 2ggz_A 92 EQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMAK 163 (211)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHTTSSCCCSCTHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh
Confidence 4567777777764 3456654 444454442 11 12344555555555566677888888766664
No 176
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=41.32 E-value=2.1 Score=35.81 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=23.0
Q ss_pred hhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 448 KHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 448 KHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
..-+-|.|++-+|.+.||+.||+.||-
T Consensus 51 ~dLglDSL~~veli~~lE~~fgi~i~~ 77 (107)
T 3ce7_A 51 EDRLWDCLDTVEFVLDVEEIFDVTVPD 77 (107)
T ss_dssp TSSBCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred cccCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 345778889999999999999999974
No 177
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=41.22 E-value=80 Score=25.91 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=20.1
Q ss_pred HHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 440 TMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 440 vs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+..+.++.-..+...|+.+++.-.|..
T Consensus 79 ~~~~F~~~D~d~~G~i~~~el~~~l~~ 105 (173)
T 1alv_A 79 WQAIYKQFDVDRSGTIGSSELPGAFEA 105 (173)
T ss_dssp HHHHHHHHCTTCCSSBCTTTHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence 455666666667778999999888865
No 178
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=40.96 E-value=50 Score=27.03 Aligned_cols=27 Identities=7% Similarity=-0.021 Sum_probs=19.6
Q ss_pred HHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 440 TMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 440 vs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+..+.++.-..+...|+.+++.-.|..
T Consensus 76 ~~~~F~~~D~d~~G~i~~~el~~~l~~ 102 (172)
T 2znd_A 76 WQNVFRTYDRDNSGMIDKNELKQALSG 102 (172)
T ss_dssp HHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCccCHHHHHHHHHH
Confidence 445566655567778999999888865
No 179
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=40.78 E-value=71 Score=33.88 Aligned_cols=49 Identities=8% Similarity=0.137 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhhCC------CCCCCHHHHHHHHHHHHHHH---------HHHHHHHHHhhhhc
Q 009343 402 LTKRSIQELVNQIDP------SERLDPDVEDILVDIAEDFV---------ESITMFGCSLAKHR 450 (537)
Q Consensus 402 LtKrKLqELVrqIDP------~e~LD~DVEELLLeIADDFV---------DsVvs~ACkLAKHR 450 (537)
.+...+.++++.+-. +..+++++.+.+.++++.|+ -+++..+|..++.+
T Consensus 325 p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 325 PSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp CCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 467788888886633 45799999999999998774 35777787766654
No 180
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.73 E-value=30 Score=35.61 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCCCCCCHHH-HHHHHHHHHH----HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 405 RSIQELVNQIDPSERLDPDV-EDILVDIAED----FVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 405 rKLqELVrqIDP~e~LD~DV-EELLLeIADD----FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
..-.++++..-....+++|+ .+.|.+.++. -|..||..|+.+|-.++...|+.+|+...|+|-
T Consensus 322 ~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 322 AARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 33334444333334444443 2334444332 378899999999988888899999999999874
No 181
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=40.52 E-value=40 Score=28.56 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=17.9
Q ss_pred CcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 009343 396 EFGNRILTKRSIQELVNQIDPSERLDPDVEDILV 429 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLL 429 (537)
.+++..|++..|+.+++.++ ..|+++-.+.|+
T Consensus 96 ~d~~G~I~~~el~~~l~~~g--~~ls~~e~~~l~ 127 (159)
T 3i5g_C 96 REGQGLISSAEIRNVLKMLG--ERITEDQCNDIF 127 (159)
T ss_dssp TTSSSEECHHHHHHHHHHSS--SCCCHHHHHHHH
T ss_pred cCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHH
Confidence 45556677777777777653 345544333333
No 182
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=40.38 E-value=13 Score=36.15 Aligned_cols=78 Identities=9% Similarity=0.111 Sum_probs=54.8
Q ss_pred cCCccCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----Hhhhhc--CCCCcchhhHHHHHhhccC
Q 009343 397 FGNRILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMFGC----SLAKHR--KSDTLEAKDILVHLERNWN 469 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~AC----kLAKHR--KSdTLEvKDVQLhLERnWN 469 (537)
+----|+-.....+++.| |.-.++|++-.+...+=++.|++.+-...- +|++.+ +...|...|.--||.|.||
T Consensus 136 DPHvWldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yG 215 (313)
T 1toa_A 136 DPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYG 215 (313)
T ss_dssp CCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHT
T ss_pred CCceeCCHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCC
Confidence 334456777777777777 334467888888888888888776654333 445433 5567888999999999999
Q ss_pred cccCC
Q 009343 470 MTLPG 474 (537)
Q Consensus 470 I~IPG 474 (537)
+.+-|
T Consensus 216 l~~~~ 220 (313)
T 1toa_A 216 FEVKG 220 (313)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 98644
No 183
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=40.11 E-value=67 Score=26.06 Aligned_cols=71 Identities=8% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH---------HHHHHHHH------------HHHHHHhhhhcCCC
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI---------AEDFVESI------------TMFGCSLAKHRKSD 453 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI---------ADDFVDsV------------vs~ACkLAKHRKSd 453 (537)
+.+++..|++..|..+++.+... ..+.++.+++..+ .++|+.-+ +..+.++.-.-++.
T Consensus 20 D~d~~G~I~~~El~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G 98 (148)
T 2lmt_A 20 DKEGTGKIATRELGTLMRTLGQN-PTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDG 98 (148)
T ss_dssp HCSSCCEEEGGGHHHHHHHHTCC-CCHHHHHHHHHHHHTTSTTEEEHHHHHHHHHHTTTTTTTHHHHHHHHHHHHSSCSS
T ss_pred cCCCCCeECHHHHHHHHHhcCCC-chHHHHHHHHHhcccCCCCcccHHHHHHHHHHHhcccCcHHHHHHHHHHHCCCCcC
Confidence 34566677777777777776432 2233344444333 12343322 33444444445555
Q ss_pred CcchhhHHHHHhh
Q 009343 454 TLEAKDILVHLER 466 (537)
Q Consensus 454 TLEvKDVQLhLER 466 (537)
.|++.++...|.+
T Consensus 99 ~I~~~El~~~l~~ 111 (148)
T 2lmt_A 99 FISPAELRFVMIN 111 (148)
T ss_dssp EECHHHHHHHHHH
T ss_pred cCcHHHHHHHHHH
Confidence 6666666655543
No 184
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=39.75 E-value=23 Score=34.48 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhcCCCCcc-----hhhHHHHHhhc
Q 009343 403 TKRSIQELVNQIDPSERLDPDVEDILVDIAE-------DFVESITMFGCSLAKHRKSDTLE-----AKDILVHLERN 467 (537)
Q Consensus 403 tKrKLqELVrqIDP~e~LD~DVEELLLeIAD-------DFVDsVvs~ACkLAKHRKSdTLE-----vKDVQLhLERn 467 (537)
+-+++-++++++++. |+||.+.|+++-- +=|..++...+.|++|+..-.+. ++||.+-||.|
T Consensus 20 ~~~~vlk~lrKl~W~---D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD~vlE~Ir~gLE~n 93 (248)
T 1uw4_B 20 TTEKVLRQMRKLPWQ---DQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVN 93 (248)
T ss_dssp SHHHHHHHHHTSCTT---SHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHcCCCC---cHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhHHHHHHHHHHHHhcC
Confidence 345667888888985 7788777776532 22556666667777776544333 45666666655
No 185
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=39.70 E-value=61 Score=25.69 Aligned_cols=61 Identities=8% Similarity=0.152 Sum_probs=34.4
Q ss_pred HHHHHHhhCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccC
Q 009343 407 IQELVNQIDPS--ERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWN 469 (537)
Q Consensus 407 LqELVrqIDP~--e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWN 469 (537)
|.++.+.+|.+ ..|+.+ ...+|..+. +-+..+...++.+-..+...|+..+..-.|.+.|+
T Consensus 100 ~~~~F~~~D~d~~G~i~~~E~~~~l~~~~--~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~ 163 (166)
T 3akb_A 100 LHAALGVADTDGDGAVTVADTARALTAFG--VPEDLARQAAAALDTDGDGKVGETEIVPAFARYFT 163 (166)
T ss_dssp HHHHHHHHCSSSSSCCBHHHHHHHHHHTT--CCHHHHHHHHHHHCTTCSSBCCHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhc
Confidence 66666666543 345544 333333321 22233334444444566778999998888887775
No 186
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=39.49 E-value=66 Score=23.81 Aligned_cols=19 Identities=5% Similarity=0.186 Sum_probs=12.9
Q ss_pred CcCCccCCHHHHHHHHHhh
Q 009343 396 EFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqI 414 (537)
.+++..|++..|..+++.+
T Consensus 20 ~d~~G~i~~~el~~~l~~~ 38 (92)
T 2kn2_A 20 KDQNGYISASELRHVMINL 38 (92)
T ss_dssp TTCSSEECHHHHHHHHHHT
T ss_pred CCCCCeEcHHHHHHHHHHh
Confidence 4455567777777777766
No 187
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=39.37 E-value=5.9 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=22.3
Q ss_pred hcCCCCcchhhHHHHHhhccCcccCC
Q 009343 449 HRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|-+.|.+-++...||+.||+.||-
T Consensus 33 dlG~DSl~~vel~~~le~~fgi~i~~ 58 (82)
T 2ava_A 33 KLGADSLDTVEIVMNLEEEFGINVDE 58 (82)
T ss_dssp CCTTCCSCHHHHHHHHHHHTTCCCCG
T ss_pred hcCCCHHHHHHHHHHHHHHHCCccCH
Confidence 34667899999999999999999874
No 188
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=39.25 E-value=45 Score=25.34 Aligned_cols=62 Identities=5% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 404 KRSIQELVNQIDPS--ERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 404 KrKLqELVrqIDP~--e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
..+|.++.+.+|.+ ..|+.+ +..+|..+. +-+..+...++.+--.+...|+..+..-.+.+.
T Consensus 26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g--~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~~~ 90 (91)
T 2pmy_A 26 LARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQEFARGFLGS 90 (91)
T ss_dssp HHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT--CCHHHHHHHHHHHCTTCSSEECHHHHTHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcC--cCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHH
Confidence 34455555555542 344432 333333321 122222233333333445567777765555543
No 189
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=39.24 E-value=41 Score=27.12 Aligned_cols=30 Identities=0% Similarity=-0.067 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 438 SITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 438 sVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
..+..++++.-..+...|+..++.-.|...
T Consensus 94 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~ 123 (174)
T 1q80_A 94 GPLPLFFRAVDTNEDNNISRDEYGIFFGML 123 (174)
T ss_dssp THHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Confidence 334445555555666778888887777664
No 190
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=38.71 E-value=78 Score=33.33 Aligned_cols=36 Identities=11% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI 431 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI 431 (537)
|.+++-.|++..|.++++.++-. .-++|++++|.++
T Consensus 312 DkDgdG~IS~eELk~aLrsLG~~-~TeeEI~~Lf~~~ 347 (440)
T 3u0k_A 312 DKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEV 347 (440)
T ss_dssp CTTCSSEECHHHHHHHHHHTTCC-CCHHHHHHHHHHH
T ss_pred cCCCCCEECHHHHHHHHHHcCCC-CCHHHHHHHHHHh
Confidence 34667778888888888877432 2234455555444
No 191
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=38.70 E-value=46 Score=31.00 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=14.2
Q ss_pred HHHhhccCcccCCCCccccc
Q 009343 462 VHLERNWNMTLPGFSGDEIK 481 (537)
Q Consensus 462 LhLERnWNI~IPGfssDEIR 481 (537)
-+|++.+.+.|+|||.=+++
T Consensus 80 ~~L~~G~~V~L~GfGtF~v~ 99 (204)
T 2iie_A 80 RALENGEQVKLSGFGNFDLR 99 (204)
T ss_dssp HHHHTTCEEEETTTEEEEEE
T ss_pred HHHhCCCeEEecCCEEEEEE
Confidence 34566667889999975543
No 192
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=38.25 E-value=5 Score=29.61 Aligned_cols=25 Identities=16% Similarity=0.565 Sum_probs=20.8
Q ss_pred hcCCCCcchhhHHHHHhhccCcccC
Q 009343 449 HRKSDTLEAKDILVHLERNWNMTLP 473 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLERnWNI~IP 473 (537)
.-|-+.|.+-++...||+.||+.|+
T Consensus 30 ~lG~DSl~~~~l~~~le~~~gi~i~ 54 (77)
T 2ehs_A 30 DLGADSLDVVELIMAFEEEFGIEIP 54 (77)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCccC
Confidence 3466778888999999999999976
No 193
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=38.04 E-value=59 Score=26.39 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHhhhhcCCCCcchhhHHHHHhh----ccCcccCCCCcccc-cccCCCCCch
Q 009343 444 CSLAKHRKSDTLEAKDILVHLER----NWNMTLPGFSGDEI-KTFRKPLVCD 490 (537)
Q Consensus 444 CkLAKHRKSdTLEvKDVQLhLER----nWNI~IPGfssDEI-R~~RK~~pTE 490 (537)
++.+-..+...|+..+....+.. .-|..||......+ .+.++....|
T Consensus 54 ~~~~D~d~dG~I~~~EF~~~~~~~~~~~~G~~lp~~lp~~l~pps~~~~~~~ 105 (111)
T 2kgr_A 54 WNLSDIDQDGKLTAEEFILAMHLIDVAMSGQPLPPVLPPEYIPPSFRRVRLE 105 (111)
T ss_dssp HHHHCSSCCSEEEHHHHHHHHHHHHHHHTTCCCCSSCCGGGSCTTTTCCCCC
T ss_pred HHHHCCCCCCCCcHHHHHHHHHHHHHHHCCCCCccccCcccCCCccCCCccc
Confidence 34444455666766665332221 23567776655544 3444444444
No 194
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=37.92 E-value=1.1e+02 Score=24.38 Aligned_cols=29 Identities=7% Similarity=0.055 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 438 SITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 438 sVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
..+..+.++.-..+...|++.++.-+|..
T Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (143)
T 2obh_A 79 EEILKAFKLFDDDETGKISFKNLKRVAKE 107 (143)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34455666666667777888888776653
No 195
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=37.86 E-value=95 Score=26.03 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=41.4
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH-----HHHHHH------------HHHHHHHHhhhhcCCCCcch
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI-----AEDFVE------------SITMFGCSLAKHRKSDTLEA 457 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI-----ADDFVD------------sVvs~ACkLAKHRKSdTLEv 457 (537)
+.+++..|++..|..+++.+.-. ..+.++++++.+. .++|+. +.+..|.++--.-++..|++
T Consensus 26 D~d~dG~I~~~El~~~l~~lg~~-~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~ 104 (153)
T 3i5g_B 26 DQDRDGFIGMEDLKDMFSSLGRV-PPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPE 104 (153)
T ss_dssp CCSTTSCCCHHHHHHHHHHTTSC-CCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCHHHHHHHHHTTCSSCSSCCCH
T ss_pred CCCCCCeEcHHHHHHHHHHcCCC-ccHHHHHHHHHhccCCccHHHHHHHHHhhhcccccHHHHHHHHhccccCCCCeEeH
Confidence 45666778888888888887432 2334444444322 123432 23444555554455566666
Q ss_pred hhHHHHHhhccCcc
Q 009343 458 KDILVHLERNWNMT 471 (537)
Q Consensus 458 KDVQLhLERnWNI~ 471 (537)
.++..+|.. +|..
T Consensus 105 ~el~~~l~~-~g~~ 117 (153)
T 3i5g_B 105 DYLKDLLEN-MGDN 117 (153)
T ss_dssp HHHHHHHHS-SSSC
T ss_pred HHHHHHHHH-cCCc
Confidence 776666643 4443
No 196
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=37.72 E-value=4.2 Score=30.75 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.3
Q ss_pred cCCCCcchhhHHHHHhhccCcccCC
Q 009343 450 RKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-|-|.|.+-++...||+.||+.||-
T Consensus 37 lG~DSl~~vel~~~le~~fgi~i~~ 61 (81)
T 1f80_D 37 LGADXLDVVELVMELEDEFDMEISD 61 (81)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred cCCcHHHHHHHHHHHHHHhCCccCH
Confidence 4677788889999999999999874
No 197
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=37.71 E-value=6.2 Score=32.07 Aligned_cols=27 Identities=19% Similarity=0.541 Sum_probs=23.1
Q ss_pred hhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 448 KHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 448 KHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
..-|-|.|.+-+|...||+.||+.|+-
T Consensus 50 ~dLGlDSL~~vel~~~lE~~fgi~i~~ 76 (97)
T 3ejb_A 50 EDLGADSLDTVELVMALEEEFDTEIPD 76 (97)
T ss_dssp TTTCCCTTHHHHHHHHHHHHTTCCCCH
T ss_pred hhcCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 345788899999999999999999874
No 198
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=37.63 E-value=5.8 Score=29.73 Aligned_cols=26 Identities=19% Similarity=0.547 Sum_probs=21.1
Q ss_pred hcCCCCcchhhHHHHHhhccCcccCC
Q 009343 449 HRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|-+.|.+-++...||+.||+.||-
T Consensus 32 dlG~DSl~~~el~~~le~~fgi~i~~ 57 (78)
T 1l0i_A 32 DLGADSLDTVELVMALEEEFDTEIPD 57 (78)
T ss_dssp TSCCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCCCH
Confidence 34667778888999999999999863
No 199
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=37.61 E-value=50 Score=27.23 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=14.6
Q ss_pred HhhhhcCCCCcchhhHHHHHhhcc
Q 009343 445 SLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 445 kLAKHRKSdTLEvKDVQLhLERnW 468 (537)
+.+-..+...|+..+..-.+...|
T Consensus 156 ~~~D~d~dg~i~~~eF~~~~~~~~ 179 (195)
T 1qv0_A 156 RHCDLDNAGDLDVDEMTRQHLGFW 179 (195)
T ss_dssp HHSCCCTTSCEEHHHHHHHHHHHH
T ss_pred HHhCCCCCCcCCHHHHHHHHHHHc
Confidence 333344566788888766666554
No 200
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=37.58 E-value=49 Score=25.52 Aligned_cols=63 Identities=8% Similarity=0.137 Sum_probs=31.1
Q ss_pred CHHHHHHHHHhhCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 403 TKRSIQELVNQIDPS--ERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 403 tKrKLqELVrqIDP~--e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
.+.+|.++.+.+|.+ ..|+.+ ..++|..+...+-+..+...++.+-..+...|+..+..-.+.
T Consensus 27 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 92 (94)
T 2kz2_A 27 SEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 92 (94)
T ss_dssp CHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 456677777766643 345543 444444443222333333333344334555666666644443
No 201
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=37.24 E-value=42 Score=30.26 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhH
Q 009343 402 LTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460 (537)
Q Consensus 402 LtKrKLqELVrqI--DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDV 460 (537)
++...+.++++++ ..+..+|+++.+.|.++++.-+..++...++++... ..|+.+||
T Consensus 169 l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v 227 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENV 227 (327)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHH
Confidence 5677788877766 234568999999999888765555555544444322 23444444
No 202
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=37.14 E-value=16 Score=35.18 Aligned_cols=77 Identities=6% Similarity=0.042 Sum_probs=53.7
Q ss_pred CCccCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hhhhcC--CCCcchhhHHHHHhhccCc
Q 009343 398 GNRILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMFGCS----LAKHRK--SDTLEAKDILVHLERNWNM 470 (537)
Q Consensus 398 ~nrILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~ACk----LAKHRK--SdTLEvKDVQLhLERnWNI 470 (537)
----|+-.....+++.| |.-.++|++-.+...+=+++|+..+-...-+ |++..+ ...|...|.--||.|.||+
T Consensus 123 PHvWldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl 202 (294)
T 3hh8_A 123 PHAWLNLENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGV 202 (294)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTC
T ss_pred CceeCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCC
Confidence 33456777777777777 3345678887788888888888877555433 444443 5566678988899999999
Q ss_pred ccCC
Q 009343 471 TLPG 474 (537)
Q Consensus 471 ~IPG 474 (537)
.+-|
T Consensus 203 ~~~~ 206 (294)
T 3hh8_A 203 PSAY 206 (294)
T ss_dssp CEEE
T ss_pred ceee
Confidence 8644
No 203
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=37.11 E-value=86 Score=24.70 Aligned_cols=31 Identities=6% Similarity=-0.079 Sum_probs=19.8
Q ss_pred CcC-CccCCHHHHHHHHHhhCCCCCCCHH-HHHHH
Q 009343 396 EFG-NRILTKRSIQELVNQIDPSERLDPD-VEDIL 428 (537)
Q Consensus 396 e~~-nrILtKrKLqELVrqIDP~e~LD~D-VEELL 428 (537)
.++ +..|++..|..+++.++ ..++++ +++++
T Consensus 25 ~d~~~G~i~~~el~~~l~~~g--~~~~~~~~~~l~ 57 (146)
T 2qac_A 25 EKSSGGKISIDNASYNARKLG--LAPSSIDEKKIK 57 (146)
T ss_dssp HHCBTTBEEHHHHHHHHHHTT--CCCCHHHHHHHH
T ss_pred ccCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHH
Confidence 345 66788888888888874 334444 44443
No 204
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=36.90 E-value=1.3e+02 Score=23.22 Aligned_cols=70 Identities=7% Similarity=0.040 Sum_probs=37.4
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHH-HHHHHHH------HHHHHHHH-------------HHHHHHHhhhhcCCCC
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPD-VEDILVD------IAEDFVES-------------ITMFGCSLAKHRKSDT 454 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~D-VEELLLe------IADDFVDs-------------Vvs~ACkLAKHRKSdT 454 (537)
+.+++..|++..|..+++.+.. .++.+ +++++.. =.++|+.- .+..++++.-..+...
T Consensus 15 D~d~~G~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~ 92 (145)
T 2bl0_B 15 DKDNDGKVSIEELGSALRSLGK--NPTNAELNTIKGQLNAKEFDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGT 92 (145)
T ss_dssp CTTCSSCEEGGGHHHHHHHTTC--CCCHHHHHHHHHHHTSSEECHHHHHHHHTSCCCCGGGGHHHHHHHHHHHCSSSSSE
T ss_pred CCCCcCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCCeEcHHHHHHHHHHHhhcCcccHHHHHHHHHHhCCCCCCe
Confidence 4456667888888888887743 33333 3333322 02245432 2333444444445556
Q ss_pred cchhhHHHHHhh
Q 009343 455 LEAKDILVHLER 466 (537)
Q Consensus 455 LEvKDVQLhLER 466 (537)
|+.+++.-.|..
T Consensus 93 i~~~e~~~~l~~ 104 (145)
T 2bl0_B 93 IQEAELRQLLLN 104 (145)
T ss_dssp EEHHHHHHHHHH
T ss_pred EcHHHHHHHHHH
Confidence 777777666654
No 205
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=36.73 E-value=28 Score=28.33 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=10.6
Q ss_pred CCcCCccCCHHHHHHHHH
Q 009343 395 DEFGNRILTKRSIQELVN 412 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVr 412 (537)
|.+++..|++..|.++++
T Consensus 24 D~d~dG~I~~~El~~~l~ 41 (111)
T 2kgr_A 24 DKTMSGHLTGPQARTILM 41 (111)
T ss_dssp SCSSCCEEEHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHH
Confidence 344455666666666666
No 206
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=36.66 E-value=47 Score=29.34 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=22.5
Q ss_pred HHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 440 TMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 440 vs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
+..+++..-..++..|+..++.-.|++ +|..
T Consensus 119 l~~~F~~~D~d~~G~I~~~El~~~l~~-~g~~ 149 (220)
T 3sjs_A 119 AYNLFVMNARARSGTLEPHEILPALQQ-LGFY 149 (220)
T ss_dssp HHHHHHHHCCSSTTEECHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHCCCCCCCCcHHHHHHHHHH-hCCC
Confidence 455666666678888999999888875 3544
No 207
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=36.59 E-value=81 Score=26.04 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=6.0
Q ss_pred CCCCcchhhHHHHH
Q 009343 451 KSDTLEAKDILVHL 464 (537)
Q Consensus 451 KSdTLEvKDVQLhL 464 (537)
+...|+..++...|
T Consensus 76 ~~G~i~~~ef~~~~ 89 (190)
T 2l2e_A 76 KNGYIDFKEFICAL 89 (190)
T ss_dssp STTCEEHHHHHHHH
T ss_pred CCCeEeHHHHHHHH
Confidence 33444444444333
No 208
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=36.47 E-value=1.3e+02 Score=23.19 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhh----------C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009343 402 LTKRSIQELVNQI----------D-PSERLDPDVEDILVDIAEDFVESITMFGCSLAKH 449 (537)
Q Consensus 402 LtKrKLqELVrqI----------D-P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKH 449 (537)
+-+..+++|+.+| + ++..||..-+.=|..-+|.|+|.-..-+-++++.
T Consensus 5 ~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~ 63 (64)
T 3cjh_B 5 NSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888888887 4 6788999999999999999999877666666654
No 209
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=36.42 E-value=36 Score=30.05 Aligned_cols=28 Identities=14% Similarity=-0.009 Sum_probs=18.7
Q ss_pred HHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 440 TMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 440 vs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+..+.++.-..+...|+..++.-+|...
T Consensus 135 l~~~F~~~D~d~dG~Is~~El~~~l~~~ 162 (226)
T 2lvv_A 135 LTVMFDTMDKDGSLLLELQEFKEALPKL 162 (226)
T ss_dssp HHHHHHHHSCSSCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCeEcHHHHHHHHHHH
Confidence 3444555555567788888888887753
No 210
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=36.14 E-value=1.2e+02 Score=23.34 Aligned_cols=69 Identities=6% Similarity=0.082 Sum_probs=36.6
Q ss_pred CcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH----------HHHHHHH------------HHHHHHhhhhcCCC
Q 009343 396 EFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIA----------EDFVESI------------TMFGCSLAKHRKSD 453 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIA----------DDFVDsV------------vs~ACkLAKHRKSd 453 (537)
.+++..|++..|..+++.+.- .++++..+.|...+ ++|+.-+ +..++++.-..+..
T Consensus 22 ~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G 99 (147)
T 4ds7_A 22 KDNSGSISASELATVMRSLGL--SPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDG 99 (147)
T ss_dssp TTCSSEEEHHHHHHHHHHTTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTTCSS
T ss_pred CCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHhccCCCcHHHHHHHHHHhCCCCCC
Confidence 445556777777777766532 23333333333332 3444433 33344444445566
Q ss_pred CcchhhHHHHHhh
Q 009343 454 TLEAKDILVHLER 466 (537)
Q Consensus 454 TLEvKDVQLhLER 466 (537)
.|+..++.-.|+.
T Consensus 100 ~i~~~e~~~~l~~ 112 (147)
T 4ds7_A 100 LISAAELKHVLTS 112 (147)
T ss_dssp EECHHHHHHHHHH
T ss_pred eECHHHHHHHHHH
Confidence 7777787777763
No 211
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=35.53 E-value=30 Score=33.29 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=25.8
Q ss_pred CHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009343 403 TKRSIQELVNQID--PSERLDPDVEDILVDIAEDFVESITMFGCSLA 447 (537)
Q Consensus 403 tKrKLqELVrqID--P~e~LD~DVEELLLeIADDFVDsVvs~ACkLA 447 (537)
+.+...++++.+- ....|++++.+.|.+.++.|.-..+...|+.|
T Consensus 252 ~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 252 EASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREA 298 (357)
T ss_dssp CHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4444455554442 23458888888888877765544444444443
No 212
>2xyk_A 2-ON-2 hemoglobin; oxygen storage-transport complex; HET: HEM; 2.10A {Agrobacterium tumefaciens}
Probab=35.37 E-value=52 Score=28.15 Aligned_cols=76 Identities=8% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhhcCCCCcchhhHHHHHhhccCc---ccCC---C----CcccccccC-CCCCchH
Q 009343 425 EDILVDIAEDFVESITMFG--CSLAKHRKSDTLEAKDILVHLERNWNM---TLPG---F----SGDEIKTFR-KPLVCDI 491 (537)
Q Consensus 425 EELLLeIADDFVDsVvs~A--CkLAKHRKSdTLEvKDVQLhLERnWNI---~IPG---f----ssDEIR~~R-K~~pTEa 491 (537)
++.|..|+|+|.+.|...- -.|...-. .|+.-|++|.+.. ++-| | |...++... ....+++
T Consensus 15 ~~~i~~lV~~FY~~v~~Dp~~~~l~~~F~------~d~~~~~~~l~~Fl~~~lGGp~~Y~~~~g~p~m~~~H~~~~I~~~ 88 (133)
T 2xyk_A 15 DATVRALTRRFYELMDTLPEAARCRAIHP------ADLSGSEAKFYDYLTGYLGGPPVYVEKHGHPMLRRRHFVAPIGPA 88 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHSC------SSTHHHHHHHHHHHHHHTTSCCHHHHHHCSCCHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHHHHHhCccccHHHHhcc------CCHHHHHHHHHHHHHHHcCcCcccccCCCCcCHHHhhcCCCcCHH
Confidence 6789999999999998864 12333322 2444555554443 3322 2 222322222 2346777
Q ss_pred HHHHH-HHHHHHhhhh
Q 009343 492 HKERL-AAIKKSVMAT 506 (537)
Q Consensus 492 HKQRM-ALIRKsI~s~ 506 (537)
|..|. .+++++|+..
T Consensus 89 ~fd~Wl~~~~~al~e~ 104 (133)
T 2xyk_A 89 ERDEWLLCFRRAMDET 104 (133)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 77775 4888888765
No 213
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=35.33 E-value=1e+02 Score=27.14 Aligned_cols=30 Identities=7% Similarity=0.123 Sum_probs=18.0
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
.+..+.++.-..+...|+..++.-.|.+.|
T Consensus 126 ~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~ 155 (224)
T 1s1e_A 126 KLRWTFNLYDINKDGYINKEEMMDIVKAIY 155 (224)
T ss_dssp HHHHHHHHHCTTCCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCeECHHHHHHHHHHHH
Confidence 344555555555666677777766666543
No 214
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=35.28 E-value=13 Score=28.35 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.7
Q ss_pred CCCCcchhhHHHHHhhccCcccCC
Q 009343 451 KSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 451 KSdTLEvKDVQLhLERnWNI~IPG 474 (537)
|-+.|.+-++...||+.||+.|+-
T Consensus 41 G~DSL~~~~l~~~l~~~~g~~l~~ 64 (89)
T 2kr5_A 41 GIDSLSSMVIGSRFREDLGLDLGP 64 (89)
T ss_dssp TCCHHHHHHHHHHHHHTTCCCCCS
T ss_pred CccHHHHHHHHHHHHHHHCCCCCc
Confidence 667788888999999999999874
No 215
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=35.24 E-value=1.1e+02 Score=22.52 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=8.6
Q ss_pred cCCHHHHHHHHHh
Q 009343 401 ILTKRSIQELVNQ 413 (537)
Q Consensus 401 ILtKrKLqELVrq 413 (537)
.|++..|..+++.
T Consensus 27 ~I~~~el~~~l~~ 39 (93)
T 1k2h_A 27 KLSKKELKDLLQT 39 (93)
T ss_dssp SCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 6666666666665
No 216
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=35.23 E-value=54 Score=25.60 Aligned_cols=62 Identities=8% Similarity=0.013 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 404 KRSIQELVNQIDPS--ERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 404 KrKLqELVrqIDP~--e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
...|.++.+.+|.. ..|+.+ ...+|..+...+-+..+...++.+-. +...|+..+..-.|.+
T Consensus 75 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~i~~~eF~~~~~~ 139 (140)
T 1ggw_A 75 PEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV-KDGMVNYHDFVQMILA 139 (140)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTC-SSCCSTTTHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CCCcEeHHHHHHHHhc
Confidence 35566666666543 345543 44444444333333333444444444 6667887777555543
No 217
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=35.09 E-value=82 Score=23.36 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=12.0
Q ss_pred hcCCCCcchhhHHHHHhhcc
Q 009343 449 HRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLERnW 468 (537)
..+...|+..+..-.+.+.+
T Consensus 67 ~~~dg~i~~~eF~~~~~~~~ 86 (90)
T 1avs_A 67 EDGSGTIDFEEFLVMMVRQM 86 (90)
T ss_dssp TTCCSSEEHHHHHHHHHHHH
T ss_pred CCCCCeEeHHHHHHHHHHHh
Confidence 34555677777766665543
No 218
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=35.09 E-value=75 Score=25.34 Aligned_cols=20 Identities=0% Similarity=-0.052 Sum_probs=12.8
Q ss_pred CCcCCccCCHHHHHHHHHhh
Q 009343 395 DEFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqI 414 (537)
+.+++..|+...|.++++.+
T Consensus 21 D~d~dG~Is~~el~~~l~~~ 40 (99)
T 1qjt_A 21 EAGNTGRVLALDAAAFLKKS 40 (99)
T ss_dssp CCTTSSCCCSHHHHHHHHTS
T ss_pred CCCCCCcCCHHHHHHHHHHc
Confidence 34555667777777777764
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=35.06 E-value=46 Score=29.85 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHH--H--HHHHHHHHHHHHhhhhcCCCCcchhhH
Q 009343 419 RLDPDVEDILVDIA--E--DFVESITMFGCSLAKHRKSDTLEAKDI 460 (537)
Q Consensus 419 ~LD~DVEELLLeIA--D--DFVDsVvs~ACkLAKHRKSdTLEvKDV 460 (537)
.|++++.++|.... . .-+.+|++.+|.+|+ .+.|+++||
T Consensus 208 ~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 208 GFTERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp CBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred CcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 67888888776543 1 235677777777764 335666766
No 220
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=34.92 E-value=16 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=21.2
Q ss_pred cCCCCcchhhHHHHHhhccCcccCC
Q 009343 450 RKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-|-+.|.+-++...||+.||+.||-
T Consensus 43 lG~DSl~~~~l~~~l~~~~~~~i~~ 67 (88)
T 2afd_A 43 YDLNSSKALILLGRLEKWLGKELNP 67 (88)
T ss_dssp TTCCSTHHHHHHHHHHHHTTSCCCG
T ss_pred cCccHHHHHHHHHHHHHHHCCCcCH
Confidence 3677888899999999999998863
No 221
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=34.88 E-value=5.7 Score=32.31 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.9
Q ss_pred cCCCCcchhhHHHHHhhccCcccCC
Q 009343 450 RKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-+-|.|++-+|.+.||+.||+.||-
T Consensus 33 LGlDSL~~veLi~~lE~~fgi~i~~ 57 (101)
T 2kw2_A 33 LGIDSLDFLDIAFAIDKAFGIKLPL 57 (101)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred cCCCHHHHHHHHHHHHHHHCCccCH
Confidence 3777888999999999999999874
No 222
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=34.87 E-value=95 Score=29.66 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=47.5
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHH-HHHHH---------HHHHHHHH-----HHHHHHhhhhcCCCCcchhh
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVED-ILVDI---------AEDFVESI-----TMFGCSLAKHRKSDTLEAKD 459 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEE-LLLeI---------ADDFVDsV-----vs~ACkLAKHRKSdTLEvKD 459 (537)
+.+++..|++..|..++ +.. ..-+.++++ ++..+ .++|+.-+ +..++++.-.-+...|...+
T Consensus 198 D~d~dG~Is~~El~~~l--~g~-~~~~~ei~~~l~~~~D~d~dG~Is~~EF~~~l~~~~~l~~~F~~~D~d~dG~Is~~E 274 (323)
T 1ij5_A 198 DTNSNGTLSRKEFREHF--VRL-GFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKEE 274 (323)
T ss_dssp CTTCCSEECHHHHHHHH--HHT-TCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHHHHHHHTCSSSCSSEEHHH
T ss_pred CCCCCCcCcHHHHHHHH--cCC-CCCHHHHHHHHHHHhcCCCCCEEeHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHH
Confidence 44667788988888887 321 122455666 55544 45777665 44555555556777899999
Q ss_pred HHHHHhhccCcc
Q 009343 460 ILVHLERNWNMT 471 (537)
Q Consensus 460 VQLhLERnWNI~ 471 (537)
+.-+|.+.+|..
T Consensus 275 l~~~l~~~~g~~ 286 (323)
T 1ij5_A 275 VQKVLEDAHIPE 286 (323)
T ss_dssp HHHHHHHTTCCG
T ss_pred HHHHHHHHcCCC
Confidence 988885556654
No 223
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=34.24 E-value=62 Score=29.24 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC---cchhhHHHHHhhccCcccCCCCccccc
Q 009343 421 DPDVEDILVDIAEDFVESITMFGCSLAKHRKSDT---LEAKDILVHLERNWNMTLPGFSGDEIK 481 (537)
Q Consensus 421 D~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdT---LEvKDVQLhLERnWNI~IPGfssDEIR 481 (537)
+++|+.++..+-..|-+...+.-.++.-...... +-+.||.|+.++-=+ |.||+..|+.
T Consensus 74 ~~~v~~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~--L~g~~d~~l~ 135 (141)
T 3n1e_A 74 EEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQA--LKGLKDLDLN 135 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHT--STTCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcc--cCCCCccccc
Confidence 4569999999999999999888777755443332 246999999998754 4578876655
No 224
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=34.15 E-value=97 Score=24.61 Aligned_cols=22 Identities=5% Similarity=0.264 Sum_probs=14.9
Q ss_pred CCcCCccCCHHHHHHHHHhhCC
Q 009343 395 DEFGNRILTKRSIQELVNQIDP 416 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP 416 (537)
+.+++..|++..|..+++.++.
T Consensus 26 D~d~~G~i~~~el~~~l~~~g~ 47 (153)
T 2ovk_B 26 DQDRDGFIGMEDLKDMFSSLGR 47 (153)
T ss_dssp CCSTTTCCCHHHHHHHTTTTTS
T ss_pred CCCCCCeECHHHHHHHHHHhCC
Confidence 3456667788888777777643
No 225
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=34.13 E-value=70 Score=25.09 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=15.0
Q ss_pred CCcCCccCCHHHHHHHHHhhC
Q 009343 395 DEFGNRILTKRSIQELVNQID 415 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqID 415 (537)
+.+++..|++..|.++++.+.
T Consensus 14 D~d~~G~i~~~el~~~l~~~g 34 (148)
T 1m45_A 14 DKKGQGAIAKDSLGDYLRAIG 34 (148)
T ss_dssp CTTCCSEEEGGGHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHhC
Confidence 345666788888888888773
No 226
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=34.13 E-value=1.2e+02 Score=23.94 Aligned_cols=20 Identities=0% Similarity=0.132 Sum_probs=12.9
Q ss_pred CcC-CccCCHHHHHHHHHhhC
Q 009343 396 EFG-NRILTKRSIQELVNQID 415 (537)
Q Consensus 396 e~~-nrILtKrKLqELVrqID 415 (537)
.++ +..|++..|..+++.+.
T Consensus 29 ~~~~~G~i~~~e~~~~l~~~~ 49 (161)
T 1dtl_A 29 LGAEDGSISTKELGKVMRMLG 49 (161)
T ss_dssp TTCGGGSBCHHHHHHHHHHTT
T ss_pred CCCCCCcCcHHHHHHHHHHcC
Confidence 344 55677777777777663
No 227
>1msk_A Cobalamin-dependent methionine synthase; methyltransferase, transferase, methionine biosynthesis, vitamin B12; HET: SAM; 1.80A {Escherichia coli K12} SCOP: d.173.1.1
Probab=34.02 E-value=81 Score=31.90 Aligned_cols=68 Identities=12% Similarity=0.232 Sum_probs=40.8
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCCCcchhhHHHHHhhccCccc-CCCCc
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHR-----KSDTLEAKDILVHLERNWNMTL-PGFSG 477 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHR-----KSdTLEvKDVQLhLERnWNI~I-PGfss 477 (537)
.+.+++++. ....|+--.=+|--|||.++|.+++..+..-+.. ..+.++.+|+ +-|+.-|++. |||+.
T Consensus 172 gi~~~~~~~--~~~~ddy~aiml~alAdrlAEA~AE~~h~~VR~e~wGya~~e~l~~~~l--~~~~Y~GiR~sPGYpa 245 (331)
T 1msk_A 172 EEDALADAF--EAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEEL--IRENYQGIRPAPGYPA 245 (331)
T ss_dssp THHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTCCCCHHHH--HTTCSSCBCCCTTSTT
T ss_pred cHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCHHHH--HhhccCccCCCCCCCC
Confidence 366676665 1122333333345678888888888887766653 2345777775 3445446765 78864
No 228
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=33.90 E-value=1e+02 Score=25.10 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=9.3
Q ss_pred cCCccCCHHHHHHHHHhh
Q 009343 397 FGNRILTKRSIQELVNQI 414 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqI 414 (537)
+++..|++..|..+++.+
T Consensus 52 d~~G~I~~~el~~~l~~~ 69 (135)
T 3h4s_E 52 PERHLITAESLRRNSGIL 69 (135)
T ss_dssp TTTTBBCHHHHHHHGGGG
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 444455555555555544
No 229
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=33.88 E-value=25 Score=32.96 Aligned_cols=63 Identities=11% Similarity=-0.010 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 402 LTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVE---SITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 402 LtKrKLqELVrqI--DP~e~LD~DVEELLLeIADDFVD---sVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
++.+.|.+.|+++ ..+..||+++.++|.++++.=+. +.++..|.++ +.+.|+.+||.-++...
T Consensus 142 l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 142 PEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp CCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 3556666666665 34567999999999998763222 3333333333 34478889987665554
No 230
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=33.88 E-value=3.8 Score=34.23 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=23.4
Q ss_pred hhhhcCC-CCcchhhHHHHHhhccCcccCC
Q 009343 446 LAKHRKS-DTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 446 LAKHRKS-dTLEvKDVQLhLERnWNI~IPG 474 (537)
|...-+- |.|++-+|.+.||+.||+.||-
T Consensus 52 L~~dLGl~DSL~~veLi~~lE~~FgI~I~~ 81 (105)
T 2lki_A 52 LLGNIPELDSMAVVNVITALEEYFDFSVDD 81 (105)
T ss_dssp CBTTBTTCCHHHHHHHHHHHHHHHTSCCCG
T ss_pred hhhhcCcccHHHHHHHHHHHHHHhCCCcCH
Confidence 3333466 8888999999999999999974
No 231
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=33.76 E-value=35 Score=28.90 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 436 VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 436 VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+..|++.|..+|+.++.+.|++.+|.+.|-++
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~ 117 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQE 117 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhC
Confidence 56788999999999999999999999988665
No 232
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=33.68 E-value=1.5e+02 Score=24.19 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=27.4
Q ss_pred ccCCHHHHHHHHHh-hCC--CCCCCHH-HHHHHHHH---------HHHHHHHHHH
Q 009343 400 RILTKRSIQELVNQ-IDP--SERLDPD-VEDILVDI---------AEDFVESITM 441 (537)
Q Consensus 400 rILtKrKLqELVrq-IDP--~e~LD~D-VEELLLeI---------ADDFVDsVvs 441 (537)
..|++..|..+++. +.. +..++++ |+++|.++ .+|||.-+..
T Consensus 27 G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~ 81 (101)
T 3nso_A 27 YKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLAC 81 (101)
T ss_dssp TEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 68999999999985 532 3566665 55555444 2367765443
No 233
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=33.54 E-value=1e+02 Score=23.78 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=10.3
Q ss_pred CcCCccCCHHHHHHHHHhh
Q 009343 396 EFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqI 414 (537)
.+++..|++..|.++++.+
T Consensus 20 ~d~dG~I~~~el~~~l~~~ 38 (92)
T 1fi6_A 20 PDLNGFIPGSAAKEFFTKS 38 (92)
T ss_dssp CSTTCEEEHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHc
Confidence 3444455555666655554
No 234
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=33.53 E-value=33 Score=34.32 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHHHHhhCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cchhhHHHHHhh-----ccC--cccCCCCc
Q 009343 407 IQELVNQIDPSERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDT-LEAKDILVHLER-----NWN--MTLPGFSG 477 (537)
Q Consensus 407 LqELVrqIDP~e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdT-LEvKDVQLhLER-----nWN--I~IPGfss 477 (537)
+.++++++--+..|+.| +++++-+|.|.=+.++--.|+.+|-+-|.++ =|+..+...+.. .|. +-+.|+|+
T Consensus 3 ~~~~i~k~~~g~~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~~~vD~~gTGG 82 (345)
T 1o17_A 3 INEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGG 82 (345)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCTTCEECCC---
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCceeeCCCCC
Confidence 45666666555666654 8888888888888888888888884444443 333333222222 232 55778888
Q ss_pred cccc
Q 009343 478 DEIK 481 (537)
Q Consensus 478 DEIR 481 (537)
|-.+
T Consensus 83 dg~~ 86 (345)
T 1o17_A 83 DGLG 86 (345)
T ss_dssp -CCC
T ss_pred CCCC
Confidence 7433
No 235
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=33.49 E-value=25 Score=34.30 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=52.4
Q ss_pred CCccCCHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh----hhh--cCCCCcchhhHHHHHhhccCc
Q 009343 398 GNRILTKRSIQELVNQID-PSERLDPDVEDILVDIAEDFVESITMFGCSL----AKH--RKSDTLEAKDILVHLERNWNM 470 (537)
Q Consensus 398 ~nrILtKrKLqELVrqID-P~e~LD~DVEELLLeIADDFVDsVvs~ACkL----AKH--RKSdTLEvKDVQLhLERnWNI 470 (537)
----|.-.....+++.|. .-.++|++-.+...+=+++|+..+-...-++ ++. ++...|...|.--||.|.||+
T Consensus 130 PHvWldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl 209 (307)
T 3ujp_A 130 PHAWMSPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGM 209 (307)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTC
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCC
Confidence 334567777777777773 3346788877778888888887775554443 332 334455678999999999999
Q ss_pred ccC
Q 009343 471 TLP 473 (537)
Q Consensus 471 ~IP 473 (537)
.+=
T Consensus 210 ~~~ 212 (307)
T 3ujp_A 210 EEI 212 (307)
T ss_dssp EEE
T ss_pred cEE
Confidence 864
No 236
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6
Probab=33.41 E-value=19 Score=36.35 Aligned_cols=70 Identities=23% Similarity=0.391 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhccC----cccC-C-CCccc----ccccC------------CCCCchHHHHHH
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNWN----MTLP-G-FSGDE----IKTFR------------KPLVCDIHKERL 496 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnWN----I~IP-G-fssDE----IR~~R------------K~~pTEaHKQRM 496 (537)
+++..|.|.++|+-. +.-.+|.-.|++.+| |||| | +..|| |..+- -..+.+.|-+++
T Consensus 159 ltTe~clLn~nRNp~-ls~~eie~~L~~~LGv~kviWL~~G~l~~DdTdgHiD~larFv~p~~vl~~~~~d~~d~~y~~~ 237 (349)
T 1zbr_A 159 LTTDSCLFEPNRNAG-LSRTAIIDTLKESLGVSRVLSLRHGALAGDDTDGHIDTLARFVDTRTIVYVRSEDPSDEHYSDL 237 (349)
T ss_dssp EEEHHHHTCTTTSTT-SCHHHHHHHHHHHSCCSEEEEESSCCCTTCCSSSCGGGSEEEEETTEEEEEECCCTTSTTHHHH
T ss_pred EEeeeeeecCCcCCC-CCHHHHHHHHHHHhCCcEEEEecCCccCCCCcCcchhheEEecCCCEEEEEcCCCCCCccHHHH
Confidence 467899999999987 789999999999998 5788 5 33433 11111 123445667888
Q ss_pred HHHHHHhhhhhhh
Q 009343 497 AAIKKSVMATEVA 509 (537)
Q Consensus 497 ALIRKsI~s~~~a 509 (537)
..+++.|+....+
T Consensus 238 ~~~~~~L~~~~da 250 (349)
T 1zbr_A 238 TAMEQELKELRRP 250 (349)
T ss_dssp HHHHHHHHHCBCT
T ss_pred HHHHHHHHhhhhc
Confidence 8888888875433
No 237
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=33.30 E-value=71 Score=24.89 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=9.0
Q ss_pred HHhhhhcCCCCcchhhH
Q 009343 444 CSLAKHRKSDTLEAKDI 460 (537)
Q Consensus 444 CkLAKHRKSdTLEvKDV 460 (537)
.+.+-..+...|+..+.
T Consensus 50 ~~~~D~d~dG~i~~~EF 66 (95)
T 1c07_A 50 WSLCDTKDCGKLSKDQF 66 (95)
T ss_dssp HHHHCTTCSSSEETTTH
T ss_pred HHHHCCCCCCcCCHHHH
Confidence 33444455556666554
No 238
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=33.26 E-value=27 Score=33.08 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhhhcCCC
Q 009343 434 DFVESITMFGCSLAKHRKSD 453 (537)
Q Consensus 434 DFVDsVvs~ACkLAKHRKSd 453 (537)
+.+..++...+.+|+..+-+
T Consensus 226 ~l~~~~~~E~~~va~a~G~~ 245 (318)
T 3hwr_A 226 AVMRDVMEECFAVARAEGVK 245 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 34444445555555555544
No 239
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=33.24 E-value=15 Score=31.63 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHHHHhhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009343 406 SIQELVNQIDP--------SERLDPDVEDILVDIAEDFVESITMFGCSLAKH 449 (537)
Q Consensus 406 KLqELVrqIDP--------~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKH 449 (537)
.|..|+.+++. ..+=|++|.++|.+||||=.+-|..+---|-+.
T Consensus 23 ai~aL~~EleAI~~Y~q~A~~t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~ 74 (95)
T 1zpy_A 23 AIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555543 457799999999999999888777776666654
No 240
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=33.08 E-value=28 Score=24.71 Aligned_cols=14 Identities=7% Similarity=0.349 Sum_probs=5.8
Q ss_pred cCCHHHHHHHHHhh
Q 009343 401 ILTKRSIQELVNQI 414 (537)
Q Consensus 401 ILtKrKLqELVrqI 414 (537)
.|++..|..+++.+
T Consensus 23 ~i~~~el~~~l~~~ 36 (76)
T 1qx2_A 23 QISKEELKLVMQTL 36 (76)
T ss_dssp SEEHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHh
Confidence 34444444444433
No 241
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=32.89 E-value=18 Score=35.39 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=54.6
Q ss_pred cCCccCCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hhh--hcCCCCcchhhHHHHHhhccC
Q 009343 397 FGNRILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMFGCS----LAK--HRKSDTLEAKDILVHLERNWN 469 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~ACk----LAK--HRKSdTLEvKDVQLhLERnWN 469 (537)
+----|+-.....+++.| |.-.++|++-.+...+=+++|++.+-...-. |++ .++...|...|.--||.|.||
T Consensus 143 DPHvWldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~af~Yfa~~yG 222 (321)
T 1xvl_A 143 NPHAWMSPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYG 222 (321)
T ss_dssp CCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEESTTHHHHHHTT
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCEEEEECchHHHHHHHCC
Confidence 333467777777777777 3345678888888888888888776544333 442 334456778899999999999
Q ss_pred cccCC
Q 009343 470 MTLPG 474 (537)
Q Consensus 470 I~IPG 474 (537)
+.+-|
T Consensus 223 L~~~~ 227 (321)
T 1xvl_A 223 MEEIY 227 (321)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 98644
No 242
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.63 E-value=30 Score=35.11 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 402 LTKRSIQELVNQID--PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 402 LtKrKLqELVrqID--P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
++...+.++++++. .+..+|+++.+.|.+.++-=+..++...+.+|. +.+.|+.+||.-.++
T Consensus 209 ~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 209 PDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTIST--TTKTINHENINEISK 272 (516)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHH--HSSCCCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 46667777776653 245699999999998887667777777776665 334577777755444
No 243
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.61 E-value=61 Score=30.25 Aligned_cols=62 Identities=11% Similarity=0.339 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc-chhhHHHHHhhccCcccCCC
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTL-EAKDILVHLERNWNMTLPGF 475 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTL-EvKDVQLhLERnWNI~IPGf 475 (537)
|-+|+-|.+|++-|+ ...+.+|.+-+|+|..+|-+..- +...| .+.|+---|++. |+.+|.+
T Consensus 84 ias~~fl~~l~~l~~--~~~~~~Vk~kil~li~~W~~~f~----------~~~~l~~i~~~Y~~Lk~~-G~~FP~~ 146 (226)
T 3zyq_A 84 VANKQTMEELKDLLK--RQVEVNVRNKILYLIQAWAHAFR----------NEPKYKVVQDTYQIMKVE-GHVFPEF 146 (226)
T ss_dssp HSSHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHTT----------TCGGGHHHHHHHHHHHHH-TCCCCCC
T ss_pred hccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhC----------CCcchHHHHHHHHHHHhc-CCCcccc
Confidence 445666666666554 24667777777777776654320 11111 155665555554 6777764
No 244
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=32.44 E-value=1e+02 Score=29.82 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=40.6
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSD 453 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSd 453 (537)
.|+.|+..-++..-++.|+-+++.+=-++|...|-....+.|+....+
T Consensus 165 sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~~ 212 (253)
T 3e46_A 165 SLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSS 212 (253)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccccCc
Confidence 456777777888899999999999999999999999999999875543
No 245
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.30 E-value=39 Score=34.85 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=33.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 426 DILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 426 ELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+.|.++++.| |..||..|+.+|-.++.+.|+.+|+.-.|+|-
T Consensus 377 ~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 377 EAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4445554433 78899999999999999999999999998874
No 246
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=32.26 E-value=8.5 Score=28.89 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=21.3
Q ss_pred hcCCCCcchhhHHHHHhhccCcccCC
Q 009343 449 HRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|-+.|.+-++...||+.||+.||-
T Consensus 36 dlG~DSl~~~~l~~~le~~fgi~i~~ 61 (82)
T 2cnr_A 36 DLDVDSLSMVEVVVAAEERFDVKIPD 61 (82)
T ss_dssp TSCCCHHHHHHHHHHHHGGGTBCCCG
T ss_pred ccCCChHHHHHHHHHHHHHhCCCCCH
Confidence 34567777888999999999999874
No 247
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=32.00 E-value=33 Score=30.62 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 009343 404 KRSIQELVNQIDPS-----ERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSD 453 (537)
Q Consensus 404 KrKLqELVrqIDP~-----e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSd 453 (537)
...|.+|+.+||.. ...+-+--..-.++.-+|++.|+..+.++-+.++-+
T Consensus 40 ~e~L~~ll~~I~~~G~rL~~~~t~~~l~~YK~lVk~Fl~~~v~~~~~l~~~~~~~ 94 (145)
T 2qup_A 40 YERLQALMSKIDDQGKLLSETRTIEELRKYKELVKEFVGDAVELGLRLEERRGFN 94 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHheehhhcccC
Confidence 36677777777531 122323333345777778888887777777666543
No 248
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=31.98 E-value=16 Score=34.17 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=26.3
Q ss_pred CHHHHHHHHHhhCCCCCCCHHH-HHHHHHHHHH----HHHHHHHHHHHhhhhcC
Q 009343 403 TKRSIQELVNQIDPSERLDPDV-EDILVDIAED----FVESITMFGCSLAKHRK 451 (537)
Q Consensus 403 tKrKLqELVrqIDP~e~LD~DV-EELLLeIADD----FVDsVvs~ACkLAKHRK 451 (537)
+.+...++++.+-....++.++ .+.|.++.+. =|++++..||.+|..|.
T Consensus 187 ~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 187 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp CHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555555665543333332221 2334444433 37788888888887653
No 249
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=31.91 E-value=48 Score=27.58 Aligned_cols=79 Identities=10% Similarity=0.141 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC---CCccccccc-CCC----CCchHHHHHH
Q 009343 425 EDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG---FSGDEIKTF-RKP----LVCDIHKERL 496 (537)
Q Consensus 425 EELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG---fssDEIR~~-RK~----~pTEaHKQRM 496 (537)
++.|..|+|+|.+.|...- .|+...... +.....-+|..-|-..+-| |.+..++.. +.. ..+++|..|.
T Consensus 10 ~~~i~~lv~~FY~~v~~Dp-~l~~~F~~~--d~~~~~~~l~~Fl~~~~GGp~~Y~g~~m~~~H~~~~~~~~I~~~~fd~w 86 (123)
T 2ksc_A 10 AAAVDLAVEKFYGKVLADE-RVNRFFVNT--DMAKQKQHQKDFMTYAFGGTDRFPGRSMRAAHQDLVENAGLTDVHFDAI 86 (123)
T ss_dssp SHHHHHHHHHHHHHHHHCH-HHHTGGGSS--CHHHHHHHHHHHHHHHTTCTTSCCSTHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCH-HHHHhcCCC--CHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHhhcccCCcCHHHHHHH
Confidence 4678899999999987743 455444421 3344444444444444433 333333311 112 4666666664
Q ss_pred -HHHHHHhhhh
Q 009343 497 -AAIKKSVMAT 506 (537)
Q Consensus 497 -ALIRKsI~s~ 506 (537)
.+++++++..
T Consensus 87 l~~~~~al~e~ 97 (123)
T 2ksc_A 87 AENLVLTLQEL 97 (123)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 4778877764
No 250
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=31.87 E-value=27 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.6
Q ss_pred cCCCCcchhhHHHHHhhccCcccCC
Q 009343 450 RKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-|-|.|.+-++...||+.||+.||-
T Consensus 38 lG~DSL~~vel~~~le~~fgi~i~~ 62 (86)
T 1af8_A 38 IGYDSLALMETAARLESRYGVSIPD 62 (86)
T ss_dssp TTCCTTTHHHHHHHHTTTTCSCCCT
T ss_pred cCCCHHHHHHHHHHHHHHHCCCcCH
Confidence 3778899999999999999999985
No 251
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=31.79 E-value=1.9e+02 Score=24.40 Aligned_cols=69 Identities=9% Similarity=0.147 Sum_probs=39.1
Q ss_pred CcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH----------HHHHHH-----HHHHHHHhhhhcCCCCcchhhH
Q 009343 396 EFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIA----------EDFVES-----ITMFGCSLAKHRKSDTLEAKDI 460 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIA----------DDFVDs-----Vvs~ACkLAKHRKSdTLEvKDV 460 (537)
.+++..|++..|..+++.+ ...++++..+.|.+.+ +||+.- .+..+.++.-..+...|+.+++
T Consensus 38 ~d~~G~I~~~El~~~l~~~--~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~ 115 (191)
T 1y1x_A 38 TDGSGAISVPELNAALSSA--GVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEV 115 (191)
T ss_dssp TTCSSSBCHHHHHHHHCBT--TBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHHHHHCTTSSSCBCHHHH
T ss_pred CCCCCcCcHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHH
Confidence 4556667776666666322 1233333333333332 345442 3455666666667778999999
Q ss_pred HHHHhh
Q 009343 461 LVHLER 466 (537)
Q Consensus 461 QLhLER 466 (537)
.-.|..
T Consensus 116 ~~~l~~ 121 (191)
T 1y1x_A 116 RAALLS 121 (191)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888865
No 252
>3qbr_A SJA, sjchgc06286 protein; helical bundle, BCL-2-like fold, apoptosis; HET: NHE; 2.60A {Schistosoma japonicum}
Probab=31.53 E-value=85 Score=29.50 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=35.4
Q ss_pred HHHHHHhh--CCCCCCCHH-HHHHHHHHHHHH--------HHHHHHHHHHhhhhcCCCCc
Q 009343 407 IQELVNQI--DPSERLDPD-VEDILVDIAEDF--------VESITMFGCSLAKHRKSDTL 455 (537)
Q Consensus 407 LqELVrqI--DP~e~LD~D-VEELLLeIADDF--------VDsVvs~ACkLAKHRKSdTL 455 (537)
|.+|++++ ++...|+++ +++.+.++||+- |-.++.|++.||++-....+
T Consensus 82 l~~l~~ql~~~~~~~lt~~tA~~~F~~Va~eLFDGiNWGRIVaLfaFgg~La~~~~~~g~ 141 (179)
T 3qbr_A 82 IEPVAQSLGIDSDKPVDKTALEIFYLEILNGLFEKLNWGRIVAMFAFLRILVLRLSKHGH 141 (179)
T ss_dssp SHHHHHHHTCSSSSCCCHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhhccccccCCCchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45566545 455577666 789999999964 55677899999998766543
No 253
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=31.50 E-value=88 Score=27.00 Aligned_cols=20 Identities=5% Similarity=0.277 Sum_probs=13.5
Q ss_pred CCcCCccCCHHHHHHHHHhh
Q 009343 395 DEFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqI 414 (537)
+.+++..|++..|..+++.+
T Consensus 113 D~d~~G~i~~~el~~~l~~~ 132 (263)
T 2f33_A 113 DTDHSGFIETEELKNFLKDL 132 (263)
T ss_dssp STTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHH
Confidence 44566677777777777665
No 254
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=31.48 E-value=66 Score=24.49 Aligned_cols=17 Identities=0% Similarity=0.038 Sum_probs=8.5
Q ss_pred HhhhhcCCCCcchhhHH
Q 009343 445 SLAKHRKSDTLEAKDIL 461 (537)
Q Consensus 445 kLAKHRKSdTLEvKDVQ 461 (537)
+.+-..+...|+..+..
T Consensus 88 ~~~D~~~dg~i~~~eF~ 104 (109)
T 1bu3_A 88 KAGDSDGDGAIGVDEWA 104 (109)
T ss_dssp HHHCTTCSSEECHHHHH
T ss_pred HHhCCCCCCcEeHHHHH
Confidence 33333445556666653
No 255
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=31.48 E-value=87 Score=28.37 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=37.0
Q ss_pred CHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHhhhhcCC------------CCcchhhHHHHH
Q 009343 403 TKRSIQELVNQID--PSERLDPDVEDILVDIAEDFV----ESITMFGCSLAKHRKS------------DTLEAKDILVHL 464 (537)
Q Consensus 403 tKrKLqELVrqID--P~e~LD~DVEELLLeIADDFV----DsVvs~ACkLAKHRKS------------dTLEvKDVQLhL 464 (537)
+.+...++++.+- -...++++..+.|.+.++.|. ..++..|+..|..+.. ..|+.+|+.-.|
T Consensus 190 ~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~ 269 (297)
T 3b9p_A 190 DEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSL 269 (297)
T ss_dssp CHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHH
Confidence 3444444544431 124578888888888777654 4566666666665542 345666665555
Q ss_pred hh
Q 009343 465 ER 466 (537)
Q Consensus 465 ER 466 (537)
++
T Consensus 270 ~~ 271 (297)
T 3b9p_A 270 KR 271 (297)
T ss_dssp TS
T ss_pred HH
Confidence 43
No 256
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=31.34 E-value=1.4e+02 Score=25.13 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=11.7
Q ss_pred CCcCCccCCHHHHHHHHHhh
Q 009343 395 DEFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqI 414 (537)
+.+++..|++..|.++++.+
T Consensus 113 D~d~~G~I~~~el~~~l~~~ 132 (198)
T 1juo_A 113 DTDRSGTVDPQELQKALTTM 132 (198)
T ss_dssp CTTCCSEECHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHh
Confidence 34445566666666666655
No 257
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=31.25 E-value=73 Score=26.67 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccC
Q 009343 402 LTKRSIQELVNQID-PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWN 469 (537)
Q Consensus 402 LtKrKLqELVrqID-P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWN 469 (537)
++...+..||+=|= ....++++...-|+.+||.|--.-+...|.-.-.+.-+.-.+.++ +.+-..||
T Consensus 81 ~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~-~~~A~~~~ 148 (172)
T 3htm_A 81 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI-LILADLHS 148 (172)
T ss_dssp SCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHH-HHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhC
Confidence 56777888887662 344566666666889999886655555665444333332234444 33334444
No 258
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=31.16 E-value=54 Score=31.39 Aligned_cols=39 Identities=8% Similarity=0.132 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhCCCCCCCH--------HHHHHHH------HHHHHHHHHHHHH
Q 009343 404 KRSIQELVNQIDPSERLDP--------DVEDILV------DIAEDFVESITMF 442 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~--------DVEELLL------eIADDFVDsVvs~ 442 (537)
.++|...++++-....||+ |++++|+ +++++||++|-+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~ 56 (297)
T 1j8m_F 4 LDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKER 56 (297)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4577888888877778887 4555665 4666677666443
No 259
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=31.13 E-value=84 Score=22.78 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=11.2
Q ss_pred cCCCCcchhhHHHHHhhcc
Q 009343 450 RKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnW 468 (537)
.+...|+..+..-.+.+.+
T Consensus 62 ~~~g~i~~~eF~~~~~~~~ 80 (85)
T 2ktg_A 62 DNSGKFDQETFLTIMLEYG 80 (85)
T ss_dssp SSCSEEEHHHHHHHHHHHS
T ss_pred CCCCcCcHHHHHHHHHHHh
Confidence 3455677777655555543
No 260
>4h5l_A Nucleoprotein; nucleocapsid protein, N protein, RNA binding, RNP, viral protein; 2.75A {Toscana virus}
Probab=31.09 E-value=86 Score=31.05 Aligned_cols=84 Identities=15% Similarity=0.237 Sum_probs=57.6
Q ss_pred cCCccCCHHHHHHHHHhhCCCCCCCHH-HHHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCc--------chhhHHHH
Q 009343 397 FGNRILTKRSIQELVNQIDPSERLDPD-VEDILVDIA----EDFVESITMFGCSLAKHRKSDTL--------EAKDILVH 463 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqIDP~e~LD~D-VEELLLeIA----DDFVDsVvs~ACkLAKHRKSdTL--------EvKDVQLh 463 (537)
-.+..+....|.++|.++ .-.-+|.. |..+|.|-+ |+|++|+ ....-|+--||...- |-|...-.
T Consensus 13 ~~~~~~d~~~i~~~v~~f-~YqGFDa~~vi~~l~erg~~~g~~~~~D~-k~mIVl~ltRGNk~~km~~kms~~Gk~~~~~ 90 (253)
T 4h5l_A 13 FLDESADSGTINAWVNEF-AYQGFDPKRIVQLVKERGTAKGRDWKKDV-KMMIVLNLVRGNKPEAMMKKMSEKGASIVAN 90 (253)
T ss_dssp TTSSCCCHHHHHHHHHHH-SBCSSCHHHHHHHHHHHHHHTTCCHHHHH-HHHHHHHHHHCSCHHHHHHTSCHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHH-HhcCCCHHHHHHHHHHHhccchhhHHHhH-HHHhhhhhhcCCCHHHHHHHhCHHHHHHHHH
Confidence 355677888999999998 33556765 677888787 7899998 566677777874411 23445556
Q ss_pred HhhccCcccCCCCcccccc
Q 009343 464 LERNWNMTLPGFSGDEIKT 482 (537)
Q Consensus 464 LERnWNI~IPGfssDEIR~ 482 (537)
|-..|||..-+-+.++|..
T Consensus 91 Li~~Y~Lk~~~~~r~~lTL 109 (253)
T 4h5l_A 91 LISVYQLKEGNPGRDTITL 109 (253)
T ss_dssp HHHHHTBCSSSCCTTCBCH
T ss_pred HHHHhCcccCCCCcccccH
Confidence 7777898875555555543
No 261
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=31.08 E-value=35 Score=27.55 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=13.5
Q ss_pred CCcCCccCCHHHHHHHHHhhC
Q 009343 395 DEFGNRILTKRSIQELVNQID 415 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqID 415 (537)
+.+++..|++..|..+++.+.
T Consensus 16 D~d~~G~i~~~El~~~l~~~~ 36 (174)
T 1q80_A 16 DFDKDGAITRMDFESMAERFA 36 (174)
T ss_dssp CTTCSSEESHHHHHHHHHHHH
T ss_pred CCCCCCcEeHHHHHHHHHHHH
Confidence 345556677777777777664
No 262
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=31.07 E-value=1.2e+02 Score=25.50 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=12.8
Q ss_pred HHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 443 GCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 443 ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+.++.-..+...|+..++.-.|...
T Consensus 100 ~F~~~D~d~~G~I~~~E~~~~l~~~ 124 (204)
T 1jba_A 100 TFKIYDKDRNGCIDRQELLDIVESI 124 (204)
T ss_dssp HHHHHCSSCSSCBCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3334334445556666665555543
No 263
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=31.00 E-value=41 Score=28.39 Aligned_cols=32 Identities=9% Similarity=0.082 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 436 VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 436 VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+..|++.|..+|+.++.+.|++.+|.+.|-++
T Consensus 86 ~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 86 AKKVLELSLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 45788899999999999999999999988664
No 264
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=30.87 E-value=85 Score=31.00 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
.+..+.++.-..+...|++.++.-.|..
T Consensus 436 ~~~~~F~~~D~d~dG~Is~~El~~~l~~ 463 (504)
T 3q5i_A 436 RLRRAFNLFDTDKSGKITKEELANLFGL 463 (504)
T ss_dssp HHHHHHHHHCTTCCSEECHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHHHhh
Confidence 3344555554455556666666555543
No 265
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=30.79 E-value=1.4e+02 Score=23.12 Aligned_cols=76 Identities=7% Similarity=0.087 Sum_probs=0.0
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH------HHHHHHHHHH------------HHHHhhhhcCCCCcc
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI------AEDFVESITM------------FGCSLAKHRKSDTLE 456 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI------ADDFVDsVvs------------~ACkLAKHRKSdTLE 456 (537)
+.+++..|++..|..+++.++. .+.++..+.|+.. .++|+.-+.. .++++.-..+...|+
T Consensus 17 D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~ 94 (143)
T 3j04_B 17 DQNRDGFIDKEDLHDMLASMGK--NPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIH 94 (143)
T ss_dssp CSSCTTCCCHHHHHHHHHHTSC--CCCHHHHHTTTTTSSSCCCHHHHHHHHHHTTTSSCCHHHHHHHHTTSCSSSCCCCC
T ss_pred CCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCcHHHHHHHHHHHCCCCCCeEc
Q ss_pred hhhHHHHHhhccCcccC
Q 009343 457 AKDILVHLERNWNMTLP 473 (537)
Q Consensus 457 vKDVQLhLERnWNI~IP 473 (537)
..++...|. .+|..+.
T Consensus 95 ~~El~~~l~-~~g~~~~ 110 (143)
T 3j04_B 95 EDHLRELLT-TMGDRFT 110 (143)
T ss_dssp TTTHHHHHH-TSSSCCC
T ss_pred HHHHHHHHH-HcCCCCC
No 266
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=30.58 E-value=59 Score=32.52 Aligned_cols=65 Identities=8% Similarity=0.124 Sum_probs=42.7
Q ss_pred CHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 403 TKRSIQELVNQID--PSERLDPDVEDILVDIAED---FVESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 403 tKrKLqELVrqID--P~e~LD~DVEELLLeIADD---FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
+.+.+.+++++.- .+..|++|+.+.|.+.++. -++++++.++.+|...+. .|+..||+-+|++..
T Consensus 264 ~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 264 DEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 3444444444331 2457899998888876642 346677888888876664 488888887777644
No 267
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=30.25 E-value=84 Score=27.11 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=11.7
Q ss_pred CcCCccCCHHHHHHHHHhh
Q 009343 396 EFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqI 414 (537)
.+++..|++..|..+++.+
T Consensus 27 ~d~~G~i~~~El~~~l~~l 45 (263)
T 2f33_A 27 ADGSGYLEGKELQNLIQEL 45 (263)
T ss_dssp TTCSSSBCSHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 3455566666666666655
No 268
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=29.99 E-value=1.4e+02 Score=23.55 Aligned_cols=43 Identities=14% Similarity=0.376 Sum_probs=26.5
Q ss_pred ccCCHHHHHHHHHh-hCC--CCCCCH-HHHHHHHHH---------HHHHHHHHHHH
Q 009343 400 RILTKRSIQELVNQ-IDP--SERLDP-DVEDILVDI---------AEDFVESITMF 442 (537)
Q Consensus 400 rILtKrKLqELVrq-IDP--~e~LD~-DVEELLLeI---------ADDFVDsVvs~ 442 (537)
..|++..|..+++. +.. ...+++ +|+++|.++ .+|||.-+...
T Consensus 27 G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~ 82 (93)
T 4eto_A 27 FKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCI 82 (93)
T ss_dssp TSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred CeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence 58999999999985 532 233444 566666554 34787655443
No 269
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=29.97 E-value=70 Score=27.26 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=21.2
Q ss_pred CCCcCCccCCHHHHHHHHHhhCCCCCCCHH-HHHHH
Q 009343 394 SDEFGNRILTKRSIQELVNQIDPSERLDPD-VEDIL 428 (537)
Q Consensus 394 ~~e~~nrILtKrKLqELVrqIDP~e~LD~D-VEELL 428 (537)
.+.+++..|++..|..+++.+. ..+.++ +++++
T Consensus 19 ~D~d~dG~I~~~E~~~~l~~~g--~~~~~~~~~~l~ 52 (188)
T 1s6i_A 19 IDTDNSGTITFDELKDGLKRVG--SELMESEIKDLM 52 (188)
T ss_dssp TSSSSSSCEEHHHHHHHHTTTT--CCCCHHHHHHHH
T ss_pred HCCCCCCcCCHHHHHHHHHHcC--CCCCHHHHHHHH
Confidence 3456777888888888888774 234443 44443
No 270
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.93 E-value=1.1e+02 Score=26.20 Aligned_cols=71 Identities=11% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH---------HHHHHHHH------------HHHHHHhhhhcCCC
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI---------AEDFVESI------------TMFGCSLAKHRKSD 453 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeI---------ADDFVDsV------------vs~ACkLAKHRKSd 453 (537)
+.+++-.|++..|..+++.+ ....-+.++++++.++ .++|+.-+ +..|+++--.-++.
T Consensus 21 D~d~dG~I~~~El~~~l~~l-g~~~~~~~~~~~~~~~d~d~~~~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G 99 (176)
T 2lhi_A 21 DKDNNGSISSSELATVMRSL-GLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDG 99 (176)
T ss_dssp CSSCSSCBCHHHHHHHHHHH-TCCCCHHHHHHHHTTTCSSCSSSBCTTHHHHHHTSSCCSSHHHHHHHHHHHHHCSSCSS
T ss_pred CCCCCCCCCHHHHHHHHHHc-CCChhHHHHHHHHHHhCcCCCccchHHHHHHHHHHhcccCCcHHHHHHHHHHhCCCCCC
Q ss_pred CcchhhHHHHHhh
Q 009343 454 TLEAKDILVHLER 466 (537)
Q Consensus 454 TLEvKDVQLhLER 466 (537)
.|+..++.-+|..
T Consensus 100 ~I~~~el~~~l~~ 112 (176)
T 2lhi_A 100 LISAAELKHVLTS 112 (176)
T ss_dssp SBCHHHHHHHHHT
T ss_pred cCcHHHHHHHHHH
No 271
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=29.58 E-value=36 Score=32.37 Aligned_cols=49 Identities=6% Similarity=-0.070 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhhCC--CCCCCHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcC
Q 009343 403 TKRSIQELVNQIDP--SERLDPDVEDILVDIAEDF----VESITMFGCSLAKHRK 451 (537)
Q Consensus 403 tKrKLqELVrqIDP--~e~LD~DVEELLLeIADDF----VDsVvs~ACkLAKHRK 451 (537)
+.+...++++.+-. ...++++..+.|.+.++-| |+.++..|+..|-+|.
T Consensus 180 ~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234 (322)
T ss_dssp CHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45555566655422 2356787777888777776 7778888887777663
No 272
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=29.45 E-value=1.1e+02 Score=25.16 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=28.9
Q ss_pred ccCCHHHHHHHHHhhCCCCCC-CHHHHHHHHHH---------HHHHHHHHHHHHH
Q 009343 400 RILTKRSIQELVNQIDPSERL-DPDVEDILVDI---------AEDFVESITMFGC 444 (537)
Q Consensus 400 rILtKrKLqELVrqIDP~e~L-D~DVEELLLeI---------ADDFVDsVvs~AC 444 (537)
..|++..|..+++..-+.... +.+|+++|.++ .+|||.-+...+.
T Consensus 39 G~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~~~~ 93 (106)
T 2h2k_A 39 DSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELAK 93 (106)
T ss_dssp TEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHH
Confidence 478999999999863222212 36788877765 3477776655433
No 273
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.40 E-value=53 Score=33.84 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=33.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 426 DILVDIAEDF----VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 426 ELLLeIADDF----VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+.|.+.++.| |..||..|+.+|-.++...|+.+|+.-.|++-
T Consensus 377 ~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 377 QELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3445554433 78899999999998999999999998888874
No 274
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=29.36 E-value=45 Score=30.84 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHhhhhcCCCCcchhhHHHHH
Q 009343 401 ILTKRSIQELVNQID--PSERLDPDVEDILVDIAEDFVESI---TMFGCSLAKHRKSDTLEAKDILVHL 464 (537)
Q Consensus 401 ILtKrKLqELVrqID--P~e~LD~DVEELLLeIADDFVDsV---vs~ACkLAKHRKSdTLEvKDVQLhL 464 (537)
-++...+.++++++- .+..+|+++.+.|.++++.-+..+ ++.++.++ .+.|+.+||.-.+
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 356777888777652 245789999888888866433333 33333332 2457777775444
No 275
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=29.34 E-value=80 Score=32.10 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhCCCCCCCH--------HHHHHHH------HHHHHHHHHHHHHH
Q 009343 404 KRSIQELVNQIDPSERLDP--------DVEDILV------DIAEDFVESITMFG 443 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~--------DVEELLL------eIADDFVDsVvs~A 443 (537)
+++|...++.+-....||+ |++++|+ +++++||++|-+.+
T Consensus 6 ~~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~ 59 (433)
T 2xxa_A 6 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKA 59 (433)
T ss_dssp HHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678888888888888887 4555564 46777777775543
No 276
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=29.30 E-value=1.7e+02 Score=27.81 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=9.5
Q ss_pred HHHHHHHHhhCCCCCCCH
Q 009343 405 RSIQELVNQIDPSERLDP 422 (537)
Q Consensus 405 rKLqELVrqIDP~e~LD~ 422 (537)
++|...++++-....||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (295)
T 1ls1_A 7 ARLQEAIGRLRGRGRITE 24 (295)
T ss_dssp HHHHHHHHTTTTSCSCCH
T ss_pred HHHHHHHHHHhCCCCCCH
Confidence 445555555555555553
No 277
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=29.06 E-value=63 Score=28.84 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=19.4
Q ss_pred CHHHHHHHHHhhCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009343 403 TKRSIQELVNQIDPSERLDP-DVEDILVDIAEDFVESITMFGCSLAKHR 450 (537)
Q Consensus 403 tKrKLqELVrqIDP~e~LD~-DVEELLLeIADDFVDsVvs~ACkLAKHR 450 (537)
....|.+++.++ -||. |+++++..+.++=+.+.+....++|+.+
T Consensus 134 ~~~~L~~~a~~~----Gl~~~d~~~~~~~~~s~~~~~~v~~~~~~a~~~ 178 (226)
T 1r4w_A 134 ESQNILSAAEKA----GMATAQAQHLLNKISTELVKSKLRETTGAACKY 178 (226)
T ss_dssp SHHHHHHHHHHT----TCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHc----CCCchhHHHHHHHcCCHHHHHHHHHHHHHHHHC
Confidence 444455555543 2333 3444444443333444444444444433
No 278
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=29.05 E-value=24 Score=40.21 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccC
Q 009343 423 DVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLP 473 (537)
Q Consensus 423 DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IP 473 (537)
++.+.+.+|.++.|++++...+ .....+..+++.+.-.|...|++.++
T Consensus 697 ~~~~~i~~~~~~~~~~~v~~~~---~~~~~~~w~~~~l~~~~~~~~~~~~~ 744 (922)
T 1nkt_A 697 NLKDQALDMVRDVITAYVDGAT---GEGYAEDWDLDALWTALKTLYPVGIT 744 (922)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT---SSSCSSCSCHHHHHHHHHHHSCCCSC
T ss_pred cHHHHHHHHHHHHHHHHHHHhc---ccCCchhcCHHHHHHHHHHHcCCCCC
Confidence 3445556666666666664322 11122345677788888888876544
No 279
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=28.99 E-value=46 Score=30.40 Aligned_cols=29 Identities=10% Similarity=0.278 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHH-HHH----------HHHHHHHHhhhh
Q 009343 421 DPDVEDILVDIAED-FVE----------SITMFGCSLAKH 449 (537)
Q Consensus 421 D~DVEELLLeIADD-FVD----------sVvs~ACkLAKH 449 (537)
.+++.+++..+|++ |-| .++.|++.||+|
T Consensus 69 ~~~a~~~f~~Va~elF~ddg~iNWGRIVaLfaF~g~La~~ 108 (170)
T 2kua_A 69 RGNRLELVKQMADKLLSKDQDFSWSQLVMLLAFAGTLMNQ 108 (170)
T ss_dssp TSCHHHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHh
Confidence 34466777777777 544 466777777777
No 280
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=28.93 E-value=22 Score=31.69 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHhhhhc
Q 009343 422 PDVEDILVDIAEDFVES----------ITMFGCSLAKHR 450 (537)
Q Consensus 422 ~DVEELLLeIADDFVDs----------Vvs~ACkLAKHR 450 (537)
+.+.+.+..+||++.+| ++.|++.||++-
T Consensus 70 ~~a~~~f~~Va~elF~dg~inWGRIVal~~F~g~la~~~ 108 (157)
T 2vof_A 70 DTARIIFNQVMEKEFEDGIINWGRIVTIFAFGGVLLKKL 108 (157)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45788899999988776 467999999874
No 281
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=28.87 E-value=1.4e+02 Score=24.65 Aligned_cols=30 Identities=7% Similarity=0.103 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
.+..+.++.-..+...|+..++.-.|...|
T Consensus 100 ~~~~~f~~~D~d~~G~I~~~E~~~~~~~~~ 129 (193)
T 1bjf_A 100 KLKWAFSMYDLDGNGYISKAEMLEIVQAIY 129 (193)
T ss_dssp HHHHHHHHHCTTCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCeECHHHHHHHHHHHH
Confidence 344455555556667788888877776643
No 282
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Probab=28.87 E-value=1.1e+02 Score=25.88 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC---CCcccccc-cCCCCCchHHHHHHH-HH
Q 009343 425 EDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG---FSGDEIKT-FRKPLVCDIHKERLA-AI 499 (537)
Q Consensus 425 EELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG---fssDEIR~-~RK~~pTEaHKQRMA-LI 499 (537)
++.|..|+|+|.+.|...- .|+..-... +.....-+|..-|-..+-| |.++.++. ......+++|..|.. ++
T Consensus 22 ~~~i~~lv~~FY~~v~~Dp-~l~~~F~~~--d~~~~~~~l~~Fl~~~~GGp~~Y~g~~m~~~H~~~~I~~~~fd~wl~~l 98 (136)
T 2gkm_A 22 HEAIEVVVEDFFVRVLADD-QLSAFFSGT--NMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHL 98 (136)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TTGGGGTTS--CHHHHHHHHHHHHHHHTTCSSCCCSCCHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCH-HHHHhcCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHcCCCCCHHHHHHHHHHH
Confidence 7889999999999988753 344443321 3444444444444444433 33344432 223446777777754 78
Q ss_pred HHHhhhh
Q 009343 500 KKSVMAT 506 (537)
Q Consensus 500 RKsI~s~ 506 (537)
+++++..
T Consensus 99 ~~al~e~ 105 (136)
T 2gkm_A 99 ADALTAA 105 (136)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8888764
No 283
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=28.74 E-value=57 Score=26.87 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 009343 424 VEDILVDIAEDFV 436 (537)
Q Consensus 424 VEELLLeIADDFV 436 (537)
+.+.+.++.+.++
T Consensus 126 ~~~~~~~~~~~~~ 138 (212)
T 1pb6_A 126 LMDELTGDLKALI 138 (212)
T ss_dssp THHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 284
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=28.67 E-value=58 Score=24.84 Aligned_cols=63 Identities=10% Similarity=0.059 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 405 RSIQELVNQIDPS--ERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 405 rKLqELVrqIDP~--e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
..|.++.+.+|.+ ..|+.+ ...+|..+...+-+..+...++.+-..+...|+..+..-.|.+.
T Consensus 24 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 89 (105)
T 1wlz_A 24 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSSE 89 (105)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHHC--
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcc
Confidence 3455555555442 344433 44444444333333333334444444566678888886666543
No 285
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6
Probab=28.65 E-value=24 Score=35.71 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=48.8
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhccCc----ccC-CCCcccc----cc------------cCCCCCchHHHHHHH
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNWNM----TLP-GFSGDEI----KT------------FRKPLVCDIHKERLA 497 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI----~IP-GfssDEI----R~------------~RK~~pTEaHKQRMA 497 (537)
+++..|.|-++|+-. |.-.+|.-.|++.+|+ ||| |+..|+- .. +.-....+.|-+++.
T Consensus 169 ltT~~clLn~nRNp~-ls~~~ie~~L~~~LG~~~viwL~~Gl~~DdtdgHiD~~arfv~p~~vl~~~~~d~~d~~y~~~~ 247 (355)
T 1xkn_A 169 LTTTACLLNPNRNPS-LGKAEIEAQLRRYLGIEKVLWLGDGIAGDDTDGHVDDMARFVNENTVVIAVEEDPEDENYKPLR 247 (355)
T ss_dssp EEEHHHHTCTTTCTT-CCHHHHHHHHHHHHCCSEEEEECCCCTTCTTSSCGGGTEEEEETTEEEEECCCCTTSTTHHHHH
T ss_pred EEEeeeecCCCCCCC-CCHHHHHHHHHHHcCCcEEEEeCCccCCCCCCcchhheeEeeCCCEEEEEcCCCCCCccHHHHH
Confidence 467899999999986 7888999999998884 778 5444431 11 112224556678889
Q ss_pred HHHHHhhhhhhh
Q 009343 498 AIKKSVMATEVA 509 (537)
Q Consensus 498 LIRKsI~s~~~a 509 (537)
.+++.|+....+
T Consensus 248 ~~~~~L~~~~da 259 (355)
T 1xkn_A 248 ENYELLKTMTGL 259 (355)
T ss_dssp HHHHHHTTCBCT
T ss_pred HHHHHHHhhhhc
Confidence 888888875433
No 286
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=28.62 E-value=7.7 Score=29.03 Aligned_cols=25 Identities=16% Similarity=0.542 Sum_probs=21.8
Q ss_pred cCCCCcchhhHHHHHhhccCcccCC
Q 009343 450 RKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-|-+.|.+-++...||+.||+.||-
T Consensus 34 lG~DSl~~~~l~~~le~~fgi~i~~ 58 (79)
T 2l3v_A 34 LGADSLDTVELVMAFEEEFGVEIPD 58 (79)
T ss_dssp TCCCSSSSSSTTTTHHHHTTCCCCH
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 3778899999999999999999873
No 287
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=28.59 E-value=1.7e+02 Score=23.89 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=18.3
Q ss_pred HHHhhhhcCCCCcchhhHHHHHh----hccCcccCCCCcccc
Q 009343 443 GCSLAKHRKSDTLEAKDILVHLE----RNWNMTLPGFSGDEI 480 (537)
Q Consensus 443 ACkLAKHRKSdTLEvKDVQLhLE----RnWNI~IPGfssDEI 480 (537)
..++|-..+...|+..+....+. +.-|..||.-....+
T Consensus 53 i~~~~D~d~dG~id~~EF~~~m~~~~~~~~g~~lP~~LP~~l 94 (106)
T 1eh2_A 53 VWELSDIDHDGMLDRDEFAVAMFLVYCALEKEPVPMSLPPAL 94 (106)
T ss_dssp HHHHHCSSCSSBCCHHHHHHHHHHHHHHHHTCCCCSSCCTTT
T ss_pred HHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCCCCCCCccc
Confidence 33445555566666655422221 122556666555544
No 288
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*
Probab=28.56 E-value=34 Score=34.97 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhCCCCCCCHHHH-HH---------HHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccC
Q 009343 404 KRSIQELVNQIDPSERLDPDVE-DI---------LVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLP 473 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~DVE-EL---------LLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IP 473 (537)
..-|++|++.+|-...||.|.. |+ -.+.+|+.|-.++.....+-+.-+.-.||+.||+-.|.- .++.+.
T Consensus 148 ~l~l~~L~e~~D~~ividNeaL~~i~~~~l~i~~af~~~N~ll~~~vsgIt~~ir~pG~iNvD~~dv~t~L~~-~g~a~~ 226 (382)
T 2vxy_A 148 AGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSN-KGSALM 226 (382)
T ss_dssp HHHHHHHHHHCSEEEEEEHHHHHHHSCTTCCHHHHHHHHHHHHHHHHHHHHTTTSSCCTTCCCHHHHHHHTTC-SSEEEE
T ss_pred HHHHHHHHHhCCEEEEEccHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCHHHHHHhccC-CCceEE
Confidence 3447788888887777776642 21 244566666666665556666677778999999999987 688888
Q ss_pred CCCc
Q 009343 474 GFSG 477 (537)
Q Consensus 474 Gfss 477 (537)
||+.
T Consensus 227 g~g~ 230 (382)
T 2vxy_A 227 GIGI 230 (382)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8764
No 289
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=28.49 E-value=87 Score=25.04 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=9.7
Q ss_pred cCCCCcchhhHHHHHhh
Q 009343 450 RKSDTLEAKDILVHLER 466 (537)
Q Consensus 450 RKSdTLEvKDVQLhLER 466 (537)
.+...|...+..-.|.+
T Consensus 135 d~dg~i~~~eF~~~~~~ 151 (159)
T 2ovk_C 135 DIDGNIKYEDLMKKVMA 151 (159)
T ss_dssp CTTCCEEHHHHHHHHHH
T ss_pred CCCCcEeHHHHHHHHhc
Confidence 34556677766555544
No 290
>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens}
Probab=28.38 E-value=1.1e+02 Score=31.23 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=41.1
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCCCcchhhHHHHHhhccCccc-CCCCc
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHR-----KSDTLEAKDILVHLERNWNMTL-PGFSG 477 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHR-----KSdTLEvKDVQLhLERnWNI~I-PGfss 477 (537)
.+.+++++. ....|+--.=+|--|||.++|.+++..+..-+.. ..+.++.+|+ +=|+.-|++. |||+.
T Consensus 183 gide~~~~~--~~~~ddy~aiml~aLAdrlAEA~AE~lH~~VR~e~wGya~de~l~~~~l--~~e~Y~GiRpSPGYpa 256 (355)
T 2o2k_A 183 GVEELSKAY--EDDGDDYSSIMVKALGDRLAEAFAEELHERVRRELWAYCGSEQLDVADL--RRLRYKGIRPAPGYPS 256 (355)
T ss_dssp SHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTCCCCHHHH--HTTCSSSBCCCTTSTT
T ss_pred hHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCHHHH--HhccCCccCCCCCCCC
Confidence 567777776 1122332222335578888888888887766553 2345777775 3455556775 78874
No 291
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=28.38 E-value=26 Score=36.02 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhccC----cccC-CCCcccc----cc------------cCCCCCchHHHHHHH
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNWN----MTLP-GFSGDEI----KT------------FRKPLVCDIHKERLA 497 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnWN----I~IP-GfssDEI----R~------------~RK~~pTEaHKQRMA 497 (537)
+++..|.|.++|+-. |.-.+|.-.|++.+| |||| |+..||- .. +.-....+.|-+++.
T Consensus 170 ltTe~clLn~nRNP~-lsk~eiE~~Lk~~LGv~kvIWL~~Gl~~DdTdgHID~~arFv~p~~vl~~~~~d~~dp~y~~~~ 248 (389)
T 2jer_A 170 LTTEMCLLSEGRNPQ-LSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQ 248 (389)
T ss_dssp EEEHHHHTSTTTCTT-SCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECCCCTTSTTHHHHH
T ss_pred EEEeeeecCCCCCCC-cCHHHHHHHHHHHcCCCEEEEcCCcCCCCCCCCchhheeEEeCCCEEEEEecCCCCCccHHHHH
Confidence 457899999999977 678899999999888 6778 6655541 11 111123445668888
Q ss_pred HHHHHhhhhhhh
Q 009343 498 AIKKSVMATEVA 509 (537)
Q Consensus 498 LIRKsI~s~~~a 509 (537)
.+.+.|+....+
T Consensus 249 ~~~~~L~~~~da 260 (389)
T 2jer_A 249 DAYQRLLKMTDA 260 (389)
T ss_dssp HHHHHHHTCBCT
T ss_pred HHHHHHHhhhhc
Confidence 888888775433
No 292
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=28.34 E-value=7.8 Score=32.06 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=20.3
Q ss_pred cCCCCcchhhHHHHHhhccCcccCC
Q 009343 450 RKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-|-|.|.+-+|...||+.||+.||-
T Consensus 37 lG~DSL~~vel~~~lE~~fgi~i~~ 61 (115)
T 1klp_A 37 LDIDSLSMVEIAVQTEDKYGVKIPD 61 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHTCCCCCH
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 3555677788999999999999874
No 293
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=28.33 E-value=1.3e+02 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH----hhhhcCCCCcchhhHHHHHhhc
Q 009343 421 DPDVEDILVDIAEDFVESITMFGCS----LAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 421 D~DVEELLLeIADDFVDsVvs~ACk----LAKHRKSdTLEvKDVQLhLERn 467 (537)
.++..+.|-+|||.|++.++..... +.|+- .-+++=+.|.|++.
T Consensus 72 ~p~~~~~l~~vad~~le~~~~e~~~~~~~~~k~~---~p~~~A~i~~LKn~ 119 (155)
T 2ao9_A 72 NQDFIAFKSEVADSFLAEKREQVYSKLMQLILGP---QPSVKAMQLYMQRF 119 (155)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSS---SCCHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHc
Confidence 3455567788888888766554332 33333 34567788999885
No 294
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=28.21 E-value=1.2e+02 Score=31.10 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhC----CCCCCCH-HHHHHHHH-------HHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 404 KRSIQELVNQID----PSERLDP-DVEDILVD-------IAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 404 KrKLqELVrqID----P~e~LD~-DVEELLLe-------IADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
++|-.+|++++- |-..-+. +|.+-|-+ +++.|.++|++....+. |.-. .||++.||.
T Consensus 19 ~k~~~~llee~~r~~~Pfs~W~~~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~-------LSd~----dLekeLGI~ 87 (334)
T 3tac_B 19 LKKKHELLEEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSA-------LSDT----EIQREIGIS 87 (334)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHT-------CCHH----HHHHTTCCC
T ss_pred HHHHHHHHHhcccCCCChhhCCcHHHHHHHHHHhcChHHHHHHHHHHccchHHHHh-------CCHH----HHHHHhCCC
Confidence 556689999882 3333343 35555544 56667777766644332 2222 356666654
Q ss_pred cCCCCcccccccCCCCCchHHHHHHHHHHHHhhhhh
Q 009343 472 LPGFSGDEIKTFRKPLVCDIHKERLAAIKKSVMATE 507 (537)
Q Consensus 472 IPGfssDEIR~~RK~~pTEaHKQRMALIRKsI~s~~ 507 (537)
+..|++||.+--+.+.+.+
T Consensus 88 -----------------nPLHRKKL~LAIqel~~~~ 106 (334)
T 3tac_B 88 -----------------NPLHRLKLRLAIQEMVSLT 106 (334)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHT
T ss_pred -----------------CHHHHHHHHHHHHHHHhcc
Confidence 3468988885555554443
No 295
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=28.09 E-value=1.2e+02 Score=26.62 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=44.3
Q ss_pred CHHHHHHHHHhhC-CCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh----ccCcccCCCC
Q 009343 403 TKRSIQELVNQID-PSERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER----NWNMTLPGFS 476 (537)
Q Consensus 403 tKrKLqELVrqID-P~e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER----nWNI~IPGfs 476 (537)
.+.+|.++.+.+| .+..|+.+ +.++|..+ .+-++.+...+++|-..+...|+..+....+.. .-|+.||...
T Consensus 49 e~~~l~~~F~~fDd~dG~Is~~El~~~l~~~--gl~~~el~~I~~~~D~d~dG~Ld~~EF~~am~li~~~~~G~~lP~~L 126 (139)
T 2jq6_A 49 DKPTYDEIFYTLSPVNGKITGANAKKEMVKS--KLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEGHELPADL 126 (139)
T ss_dssp THHHHHHHHHHSCCSSSEEEHHHHHHHHHHT--TCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTTSCCCSCC
T ss_pred HHHHHHHHHHHhCCCCCeECHHHHHHHHHHh--CcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHcCCCCCccc
Confidence 3677888888887 22345544 44555432 233455666667777777777887775333222 2256677655
Q ss_pred cccc
Q 009343 477 GDEI 480 (537)
Q Consensus 477 sDEI 480 (537)
.+.+
T Consensus 127 P~~l 130 (139)
T 2jq6_A 127 PPHL 130 (139)
T ss_dssp CTTS
T ss_pred Cccc
Confidence 5544
No 296
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=27.96 E-value=1.2e+02 Score=23.29 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=21.1
Q ss_pred cCCc-cCCHHHHHHHHHhhCC-CCCCCHHHHHHHHHH
Q 009343 397 FGNR-ILTKRSIQELVNQIDP-SERLDPDVEDILVDI 431 (537)
Q Consensus 397 ~~nr-ILtKrKLqELVrqIDP-~e~LD~DVEELLLeI 431 (537)
++.. .|++..|..+++...+ ...-+.+|++++.++
T Consensus 23 d~dG~~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~ 59 (92)
T 2kax_A 23 EGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSL 59 (92)
T ss_dssp SSCSSEEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHH
T ss_pred CCCCCeeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4444 7899999999987433 112344566655544
No 297
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=27.92 E-value=83 Score=26.66 Aligned_cols=27 Identities=4% Similarity=0.080 Sum_probs=15.4
Q ss_pred HHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 440 TMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 440 vs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+..++++.-..+...|+..++.-.|..
T Consensus 130 ~~~~F~~~D~d~~G~Is~~El~~~l~~ 156 (208)
T 2hpk_A 130 SNSYYDVLDDDGDGTVDVDELKTMMKA 156 (208)
T ss_dssp HHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 344444444455666777777666643
No 298
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=27.80 E-value=45 Score=25.90 Aligned_cols=34 Identities=15% Similarity=-0.028 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHH--HHHHHHHHHHHhhhhcC
Q 009343 418 ERLDPDVEDILVDIAED--FVESITMFGCSLAKHRK 451 (537)
Q Consensus 418 e~LD~DVEELLLeIADD--FVDsVvs~ACkLAKHRK 451 (537)
-.|.+--.+.|.++.|+ |=.+||..||+.|...+
T Consensus 16 r~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~~~ 51 (78)
T 2zc2_A 16 RMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNG 51 (78)
T ss_dssp SCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 35667777777777777 77788888888886433
No 299
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=27.79 E-value=81 Score=27.47 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=19.0
Q ss_pred CCcCCccCCHHHHHHHHHh-hCCCCCCCHHHHHHHH
Q 009343 395 DEFGNRILTKRSIQELVNQ-IDPSERLDPDVEDILV 429 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrq-IDP~e~LD~DVEELLL 429 (537)
+.+++..|++..|..+++. ++. ..-+.+++++|.
T Consensus 58 D~d~dG~I~~~El~~~l~~~lg~-~~~~~~~~~~~~ 92 (219)
T 3cs1_A 58 DKNETGKLCYDEVYSGCLEVLKL-DEFTSRVRDITK 92 (219)
T ss_dssp CTTCSSCBCHHHHHHHHHHTTCG-GGTCSCHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHhCC-CccHHHHHHHHH
Confidence 3456667788888777766 332 222344555443
No 300
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=27.77 E-value=68 Score=30.19 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=38.5
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSD 453 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSd 453 (537)
.|+.|+..-++..-++.|+-+++.+=-++|...|-....+.|+.+..+
T Consensus 128 sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~~ 175 (216)
T 2pwq_A 128 SIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEE 175 (216)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCccc
Confidence 356677766788889999999999888899999999999999866544
No 301
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=27.71 E-value=80 Score=24.31 Aligned_cols=35 Identities=17% Similarity=0.497 Sum_probs=23.8
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHH-HHHHHHHH
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPD-VEDILVDI 431 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~D-VEELLLeI 431 (537)
+.+++..|++..|..+++.+. ..++++ +++++.++
T Consensus 39 D~d~~G~I~~~El~~~l~~~g--~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 39 DKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREA 74 (94)
T ss_dssp CTTCCSCBCHHHHHHHHHHHT--CCCCHHHHHHHHHHH
T ss_pred CCCCcCcCCHHHHHHHHHHhC--CCCCHHHHHHHHHHh
Confidence 456777899999999999884 345554 55544443
No 302
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=27.61 E-value=1.3e+02 Score=23.96 Aligned_cols=18 Identities=11% Similarity=0.433 Sum_probs=9.1
Q ss_pred cCCccCCHHHHHHHHHhh
Q 009343 397 FGNRILTKRSIQELVNQI 414 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqI 414 (537)
+++..|++..|..+++.+
T Consensus 95 d~~G~I~~~el~~~l~~~ 112 (148)
T 1exr_A 95 DGNGLISAAELRHVMTNL 112 (148)
T ss_dssp TCSSCBCHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 344445555555555544
No 303
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=27.46 E-value=67 Score=29.34 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=32.1
Q ss_pred CCccCCHHHHHHHHHhhCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 009343 398 GNRILTKRSIQELVNQIDPSERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSD 453 (537)
Q Consensus 398 ~nrILtKrKLqELVrqIDP~e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSd 453 (537)
+..|-....|.+++.+++ ||.+ ++++|..+.++=+++.+....+.|+.+|..
T Consensus 129 g~di~d~~~L~~~a~~~G----Ld~~~~~~~l~~~~s~~~~~~l~~~~~~a~~~Gv~ 181 (234)
T 3rpp_A 129 NEDITEPQSILAAAEKAG----MSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAF 181 (234)
T ss_dssp CCCCSSHHHHHHHHHHTT----CCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCCC
Confidence 445666777888887753 6653 455554455555666667777777665543
No 304
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=27.24 E-value=25 Score=33.26 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 433 EDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 433 DDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
.+++..++...+++|+..+.+ |+...+...|+
T Consensus 215 ~~l~~~~~~E~~~va~a~G~~-l~~~~~~~~~~ 246 (320)
T 3i83_A 215 EGFVRAIMQEIRAVAAANGHP-LPEDIVEKNVA 246 (320)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CChHHHHHHHH
Confidence 455666666667777776665 34333444443
No 305
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.11 E-value=67 Score=30.17 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCCCcchhhHHHH
Q 009343 402 LTKRSIQELVNQID--PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHR---KSDTLEAKDILVH 463 (537)
Q Consensus 402 LtKrKLqELVrqID--P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHR---KSdTLEvKDVQLh 463 (537)
+++..+.+.++++- .+..|++++.+.|.++++-=+..++...+.++..- +.+.|+..||.-.
T Consensus 169 l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 169 LPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp CCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 45666777666553 45679999999999998765555655555554332 2235666666433
No 306
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=27.06 E-value=95 Score=26.99 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=13.6
Q ss_pred cchhhHHHHHhhccCcccCC
Q 009343 455 LEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 455 LEvKDVQLhLERnWNI~IPG 474 (537)
.+||+-.+.|=..|...+.+
T Consensus 99 ~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 99 PKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 36777777777777776654
No 307
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=26.98 E-value=11 Score=33.60 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCccc-CC
Q 009343 434 DFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTL-PG 474 (537)
Q Consensus 434 DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~I-PG 474 (537)
+-+|-++..||+.+- |+..|+.-.|-++|-||| ||
T Consensus 69 ~~~Dp~i~~Aa~~sG------l~~~dl~~~LP~eltlWvDPg 104 (130)
T 2z15_A 69 EKVDPVIEQASKESG------LDIDDVRGNLPQDLSVWIDPF 104 (130)
T ss_dssp SSBCHHHHHHHHTTT------CCHHHHHHHSCTTEEEEEETT
T ss_pred CCCCHHHHHHHHHhC------CCHHHHHHhCCccCEEEECCC
Confidence 446677777877443 788999888999999998 55
No 308
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=26.98 E-value=73 Score=26.15 Aligned_cols=67 Identities=3% Similarity=0.135 Sum_probs=33.5
Q ss_pred CHHHHHHHHHhhCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 403 TKRSIQELVNQIDPS--ERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 403 tKrKLqELVrqIDP~--e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
.+..|.++.+.+|.+ ..|+.+ ..++|. ...+-+..+...++.+-..+...|+..+..-.|.+.++..
T Consensus 121 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~--~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~~~~ 190 (191)
T 3khe_A 121 SRERLLAAFQQFDSDGSGKITNEELGRLFG--VTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKICDVK 190 (191)
T ss_dssp CHHHHHHHHHHHCTTCSSEECHHHHHHHTT--SSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHCCCCcCcCCHHHHHHHHc--cCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhccC
Confidence 344556666666543 345443 222222 1111122223333334445666788888887777766654
No 309
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=26.93 E-value=91 Score=24.19 Aligned_cols=62 Identities=2% Similarity=0.069 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCC--CCCCHH-HHHHHHH-HHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 404 KRSIQELVNQIDPS--ERLDPD-VEDILVD-IAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 404 KrKLqELVrqIDP~--e~LD~D-VEELLLe-IADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
...|.++.+.+|.. ..|+.+ ..++|.. +...+-+..+...++.+-..+...|+..+..-+|.
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 152 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 152 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 45566666666543 345443 4444444 22222223333334444445566777777755554
No 310
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=26.81 E-value=1.6e+02 Score=24.35 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=13.3
Q ss_pred CCcCCccCCHHHHHHHHHhh
Q 009343 395 DEFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqI 414 (537)
+.+++..|++..|..+++.+
T Consensus 60 D~d~~G~I~~~el~~~l~~~ 79 (150)
T 2jjz_A 60 DLNNEGEIDLMSLKRMMEKL 79 (150)
T ss_dssp CCCTTSSBCHHHHHHHHHHT
T ss_pred CCCCcCcCCHHHHHHHHHHc
Confidence 44555667777777777766
No 311
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=26.81 E-value=42 Score=30.68 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009343 405 RSIQELVNQIDPS-----ERLDPDVEDILVDIAEDFVESITMFGCSL 446 (537)
Q Consensus 405 rKLqELVrqIDP~-----e~LD~DVEELLLeIADDFVDsVvs~ACkL 446 (537)
..|.+|+.+||.. ...+-+-...-.++.-+|++.|+..+.++
T Consensus 51 e~L~~Ll~~I~~~G~rL~~~~t~~~l~~YK~lVK~FL~~vv~~~~~l 97 (162)
T 2p61_A 51 KLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKL 97 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566666666431 12222223333466666666666666666
No 312
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=26.80 E-value=33 Score=23.57 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=14.4
Q ss_pred CCcCCccCCHHHHHHHHHhhC
Q 009343 395 DEFGNRILTKRSIQELVNQID 415 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqID 415 (537)
+.+++..|++..|..+++.+.
T Consensus 11 D~d~~G~i~~~el~~~l~~~~ 31 (67)
T 1tiz_A 11 DKNKDGKLSLDEFREVALAFS 31 (67)
T ss_dssp CTTSSSCEEHHHHHHHHHHTC
T ss_pred CCCCCCcCcHHHHHHHHHHhC
Confidence 345556778888888887763
No 313
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha helix, heme, hydroxylation, iron, membrane, metal-binding; HET: HEM; 1.93A {Mycobacterium tuberculosis} PDB: 1ngk_A*
Probab=26.64 E-value=1.1e+02 Score=25.58 Aligned_cols=76 Identities=8% Similarity=-0.001 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCcc-------ccccc-CCCCCchHHHHHH
Q 009343 425 EDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGD-------EIKTF-RKPLVCDIHKERL 496 (537)
Q Consensus 425 EELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfssD-------EIR~~-RK~~pTEaHKQRM 496 (537)
++.|..|+|+|.+.|...-.--..+.+. +.....-.|..-|-.++-|-... .++.. .....+++|..|.
T Consensus 12 ~~~i~~lv~~FY~~v~~dp~l~~~F~~~---d~~~~~~~l~~fl~~~~GGp~~Y~~~~G~p~m~~~H~~~~I~~~~f~~w 88 (128)
T 2qrw_A 12 AKTFDAIVSRFYAQVAEDEVLRRVYPED---DLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAF 88 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHSCCS---CCHHHHHHHHHHHHHHTTSCCHHHHHHCSCCHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhccCC---CHHHHHHHHHHHHHHHhCCCcccccCcCChhHHHhhcCCCcCHHHHHHH
Confidence 6778999999999988865433333332 33444444555555454443221 12221 2244677777775
Q ss_pred H-HHHHHh
Q 009343 497 A-AIKKSV 503 (537)
Q Consensus 497 A-LIRKsI 503 (537)
. +++++|
T Consensus 89 l~~~~~al 96 (128)
T 2qrw_A 89 LRCMHTAV 96 (128)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4 888888
No 314
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=26.60 E-value=45 Score=26.69 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCCCcchhhHHHHHhhccCcccCC
Q 009343 451 KSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 451 KSdTLEvKDVQLhLERnWNI~IPG 474 (537)
|-|.|.+-+|...||+.||+.||-
T Consensus 38 G~DSL~~vel~~~le~~fgi~i~~ 61 (95)
T 1nq4_A 38 GYDSLALLNTVGRIERDYGVQLGD 61 (95)
T ss_dssp TCCSHHHHHHHHHHHHHTCCCSCT
T ss_pred CCCHHHHHHHHHHHHHHHCCccCH
Confidence 778899999999999999999984
No 315
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=26.40 E-value=94 Score=25.03 Aligned_cols=71 Identities=10% Similarity=0.180 Sum_probs=40.0
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCH-HHHHHHHHH-----HHHHHHH------------HHHHHHHhhhhcCCCCcc
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDP-DVEDILVDI-----AEDFVES------------ITMFGCSLAKHRKSDTLE 456 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~-DVEELLLeI-----ADDFVDs------------Vvs~ACkLAKHRKSdTLE 456 (537)
+.+++..|++..|..+++.+... .++. ++++++.++ .++|+.- .+..++++.-..+...|+
T Consensus 35 D~d~~G~i~~~el~~~l~~~g~~-~~~~~~~~~l~~~~dg~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~ 113 (166)
T 2mys_B 35 DQNADGIIDKDDLRETFAAMGRL-NVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIK 113 (166)
T ss_pred CCCCCCcCCHHHHHHHHHHhCCC-CCCHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCccee
Confidence 45667788888888888887431 2333 344433321 1244432 233445555455566677
Q ss_pred hhhHHHHHhh
Q 009343 457 AKDILVHLER 466 (537)
Q Consensus 457 vKDVQLhLER 466 (537)
..++.-.|..
T Consensus 114 ~~el~~~l~~ 123 (166)
T 2mys_B 114 KSFLEELLTT 123 (166)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 316
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn oxidoreductase, oxidoreductase-oxidoreductase inhibitor COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} SCOP: d.174.1.1 PDB: 2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A* 3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A* 3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Probab=26.30 E-value=84 Score=33.17 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHHhhhh
Q 009343 489 CDIHKERLAAIKKSVMAT 506 (537)
Q Consensus 489 TEaHKQRMALIRKsI~s~ 506 (537)
+++|..|++.|++.|+.+
T Consensus 78 ~~~~~~Rl~eV~~eI~~t 95 (422)
T 3n5w_A 78 SKAHMDRLEEVNKEIEST 95 (422)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhh
Confidence 467888888888888775
No 317
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=25.85 E-value=27 Score=28.94 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=29.5
Q ss_pred CCcchhhHHHHHhhccCcc-----cCCCCcccccccCCCCCc--hHHHHHHH
Q 009343 453 DTLEAKDILVHLERNWNMT-----LPGFSGDEIKTFRKPLVC--DIHKERLA 497 (537)
Q Consensus 453 dTLEvKDVQLhLERnWNI~-----IPGfssDEIR~~RK~~pT--EaHKQRMA 497 (537)
+.=|++||.-||...|+-. .+-+..++|+..|+...+ +.++.|-+
T Consensus 76 sd~ei~~l~~Yl~~~~~~~~~~~~~~~~t~~~v~~~r~~~~~~~~~~~~r~~ 127 (131)
T 1c52_A 76 KDEEIAAVLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERKK 127 (131)
T ss_dssp CHHHHHHHHHHHHHTTSTGGGSTTCCCCCHHHHHHHTTSCCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCccCCCCCCCCCHHHHHHHHhccCCHHHHHHHHHh
Confidence 3347888888888888865 344566777777765544 55555543
No 318
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=25.56 E-value=27 Score=28.43 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=25.7
Q ss_pred HHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 444 CSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 444 CkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
..+..--+-+.|++-++...||++||+.||.
T Consensus 26 ~~l~~dlg~DSL~~veli~~lE~eF~I~i~~ 56 (87)
T 2kci_A 26 TSANDIDAWDSLSHMNLIVSLEVHYKIKFAL 56 (87)
T ss_dssp CCSTTCCCCCSTHHHHHHHHHHHHHTCCCCH
T ss_pred CCcccccCCChHHHHHHHHHHHHHHCCccCH
Confidence 3444556788999999999999999999875
No 319
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.55 E-value=1.1e+02 Score=31.31 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhCCCCCCCH--------HHHHHHH------HHHHHHHHHHHHHH
Q 009343 404 KRSIQELVNQIDPSERLDP--------DVEDILV------DIAEDFVESITMFG 443 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~--------DVEELLL------eIADDFVDsVvs~A 443 (537)
+++|...++.+-...+||+ |++++|+ +++++||++|-+.+
T Consensus 6 ~~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~ 59 (425)
T 2ffh_A 6 SARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEA 59 (425)
T ss_dssp HHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3567777777776777775 3445554 46777887776544
No 320
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=25.54 E-value=1.7e+02 Score=23.17 Aligned_cols=46 Identities=30% Similarity=0.464 Sum_probs=26.5
Q ss_pred cCCc-cCCHHHHHHHHHhhCC---CCCCCHH-HHHHHHHH---------HHHHHHHHHHH
Q 009343 397 FGNR-ILTKRSIQELVNQIDP---SERLDPD-VEDILVDI---------AEDFVESITMF 442 (537)
Q Consensus 397 ~~nr-ILtKrKLqELVrqIDP---~e~LD~D-VEELLLeI---------ADDFVDsVvs~ 442 (537)
+++. .|++..|.++++..-+ +..++++ |+++|.++ .+|||.-+...
T Consensus 23 dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~ 82 (99)
T 2y5i_A 23 EGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (99)
T ss_dssp SSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred CCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3443 7899999999986321 2345544 55555443 24677655443
No 321
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=25.53 E-value=65 Score=27.67 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH-------------HHHHHhhhhcCC-CCcchhhHHHHHhhccCccc
Q 009343 407 IQELVNQIDPSERLDPDVEDILVDIAEDFVESIT-------------MFGCSLAKHRKS-DTLEAKDILVHLERNWNMTL 472 (537)
Q Consensus 407 LqELVrqIDP~e~LD~DVEELLLeIADDFVDsVv-------------s~ACkLAKHRKS-dTLEvKDVQLhLERnWNI~I 472 (537)
-...|++|-....=++++.+.+|+|..+|-...+ +--+++++.=+. .-| +.+....|-..|.+.+
T Consensus 10 A~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDL-l~eFn~FLP~~~~~~~ 88 (105)
T 2f05_A 10 AISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDL-LSEFGQFLPEAKRSLF 88 (105)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHH-HHHHHHHSCGGGC---
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccCHHH-HHHHHHHCCCccccCC
Confidence 3456666655555599999999999999975432 122233332222 222 4444555566666666
Q ss_pred CCCCcccc
Q 009343 473 PGFSGDEI 480 (537)
Q Consensus 473 PGfssDEI 480 (537)
++-+....
T Consensus 89 ~~~~~~~~ 96 (105)
T 2f05_A 89 TGNGSCEM 96 (105)
T ss_dssp --------
T ss_pred CCchhhhh
Confidence 66555433
No 322
>3jvo_A GP6; 13-membered ring, viral protein; HET: MSE; 2.10A {Enterobacteria phage HK97}
Probab=25.44 E-value=86 Score=26.55 Aligned_cols=40 Identities=5% Similarity=0.083 Sum_probs=30.8
Q ss_pred ccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009343 400 RILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMF 442 (537)
Q Consensus 400 rILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ 442 (537)
.+++-..++.-+| ||.. -|++..+.|++-|.++|++.+..
T Consensus 7 ~~vtLee~K~~LR-id~d--~dD~li~~li~AA~~~~~~~~~~ 46 (108)
T 3jvo_A 7 DVISLSLFKQQIE-FEED--DRDELITLYAQAAFDYCMRWCDE 46 (108)
T ss_dssp GTSCHHHHHHHTT-CCCS--TTHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHcc-CCCC--ccHHHHHHHHHHHHHHHHHHhCC
Confidence 4667666666666 6765 48889999999999999888764
No 323
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=25.38 E-value=75 Score=25.36 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=0.0
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH---------HHHHHHH
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE---------DFVESIT 440 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIAD---------DFVDsVv 440 (537)
+.+++..|++..|..+++.+ +..++++..+.|++.+| +|+.-+.
T Consensus 97 D~d~~G~I~~~el~~~l~~~--g~~~~~~~~~~~~~~~d~~dg~i~~~eF~~~~~ 149 (156)
T 1wdc_B 97 DEQETKKLNIEYIKDLLENM--GDNFNKDEMRMTFKEAPVEGGKFDYVKFTAMIK 149 (156)
T ss_dssp CTTCCSCEEHHHHHHHHHHS--SSCCCHHHHHHHHHHCCEETTEECHHHHHHHHH
T ss_pred CcCCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHhcCCCCCEEeHHHHHHHHh
No 324
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=25.29 E-value=99 Score=24.92 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=13.1
Q ss_pred HhhhhcCCCCcchhhHHHHHhhc
Q 009343 445 SLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 445 kLAKHRKSdTLEvKDVQLhLERn 467 (537)
+.+-..+...|+..+..-.|.+.
T Consensus 138 ~~~D~d~dg~I~~~eF~~~~~~~ 160 (166)
T 2mys_B 138 AAFPPDVAGNVDYKNICYVITHG 160 (166)
T ss_pred HhcCCCCCCeEeHHHHHHHHHhc
Confidence 33333455567777776666554
No 325
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=25.28 E-value=25 Score=39.71 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 423 DVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 423 DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
++.+.+.++.+++|++++..-|. .+..++..+.-.|+..
T Consensus 667 ~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~ 705 (822)
T 3jux_A 667 DYDEYLKDIFEDVVSTRVEEFCS------GKNWDIESLKNSLSFF 705 (822)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSS------TTCCCCHHHHHHTTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC------hhhccHHHHHHHHHHh
Confidence 46677778888888888877663 3445677777777776
No 326
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=25.24 E-value=84 Score=30.91 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=31.2
Q ss_pred ccCCHHHHHHHHHhh----CCCCCCCHHHH---------HHHHHHHHHHHHHHHHH
Q 009343 400 RILTKRSIQELVNQI----DPSERLDPDVE---------DILVDIAEDFVESITMF 442 (537)
Q Consensus 400 rILtKrKLqELVrqI----DP~e~LD~DVE---------ELLLeIADDFVDsVvs~ 442 (537)
..|+++.|+.|+|.| |+..++|.=|+ +.|.++++++|+.+...
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~a 59 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDC 59 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHH
Confidence 458899999999987 66666655554 56888888888755544
No 327
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=25.22 E-value=1.8e+02 Score=25.64 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 435 FVESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 435 FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
..+..+..+.++.-..+...|+..++.-.|+..+
T Consensus 135 ~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~ 168 (229)
T 3dd4_A 135 TVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIY 168 (229)
T ss_dssp CHHHHHHHHHHHHCTTCSSCCBHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHH
Confidence 3345556666666666677788888877776654
No 328
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=25.20 E-value=1.1e+02 Score=25.07 Aligned_cols=79 Identities=10% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC---CCccccccc-CCCCCchHHHHHHH-HH
Q 009343 425 EDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG---FSGDEIKTF-RKPLVCDIHKERLA-AI 499 (537)
Q Consensus 425 EELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG---fssDEIR~~-RK~~pTEaHKQRMA-LI 499 (537)
++.|..|+|+|.+.|... -.|+..-.. .+.....-+|..-|-..+-| |++..++.. .....+++|..|.. ++
T Consensus 14 ~~~i~~lv~~FY~~v~~d-p~l~~~F~~--~d~~~~~~~l~~fl~~~~gGp~~Y~g~~m~~~H~~~~I~~~~f~~wl~~~ 90 (121)
T 3aq9_A 14 ENAMKAAVPLFYKKVLAD-ERVKHFFKN--TDMDHQTKQETDFLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAIIENL 90 (121)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTTGGGGTT--CCHHHHHHHHHHHHHHHTTSCCCCCSCCHHHHTTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHhhCC--CCHHHHHHHHHHHHHHHhCCCCCCCCccHHHHhcCCCcCHHHHHHHHHHH
Confidence 678999999999998554 234433221 13333333444444444433 444444322 23446777777754 88
Q ss_pred HHHhhhh
Q 009343 500 KKSVMAT 506 (537)
Q Consensus 500 RKsI~s~ 506 (537)
+++++..
T Consensus 91 ~~al~~~ 97 (121)
T 3aq9_A 91 AATLKEL 97 (121)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888764
No 329
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.07 E-value=1.5e+02 Score=27.14 Aligned_cols=36 Identities=8% Similarity=0.299 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 009343 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVES 438 (537)
Q Consensus 401 ILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDs 438 (537)
|-+|+-|++|++-|.. ..+.+|.+-+|+|.++|.+.
T Consensus 81 va~~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 81 VFTKENCEMFSSFLES--TPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HSSHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHH
Confidence 3455666666655532 23566766666666666654
No 330
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=24.88 E-value=2.5e+02 Score=23.02 Aligned_cols=30 Identities=3% Similarity=0.042 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 437 ESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 437 DsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+..+..+.++.-..+...|+..++.-.|..
T Consensus 108 ~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~ 137 (191)
T 2ccm_A 108 TKYMNFMFDVNDTSGDNIIDKHEYSTVYMS 137 (191)
T ss_dssp HHHHHHHHHHHCTTCSSBCCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 344555555665666777888888766643
No 331
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=24.82 E-value=51 Score=33.82 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=50.7
Q ss_pred HHHHHHHHhhCCCCCCCHHHH-HH---------HHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 405 RSIQELVNQIDPSERLDPDVE-DI---------LVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 405 rKLqELVrqIDP~e~LD~DVE-EL---------LLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|++|.+.+|-...||.|.. |+ -.+.+|+.|-.++.....+-+.-+.-.||+.||+-.|.. .++.+-|
T Consensus 149 ~~l~~L~e~~D~~ividNeaL~~i~~~~l~i~~af~~~N~li~~~v~~it~~ir~pG~iNvD~~dv~t~L~~-~g~a~~g 227 (394)
T 2vaw_A 149 EGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSE-MGMAMMG 227 (394)
T ss_dssp HHHHHHHTTCSEEEEEEHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSBCSSCCCHHHHHHHHTT-TCCBEEE
T ss_pred HHHHHHHHhCCEEEEEecHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHhccC-CCceeEE
Confidence 346677777777666666542 21 245567777777776666777778888999999999976 5888877
Q ss_pred CCc
Q 009343 475 FSG 477 (537)
Q Consensus 475 fss 477 (537)
|+.
T Consensus 228 ~g~ 230 (394)
T 2vaw_A 228 TGC 230 (394)
T ss_dssp EEE
T ss_pred EEe
Confidence 763
No 332
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Probab=24.77 E-value=1.3e+02 Score=30.02 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.4
Q ss_pred CchHHHHHHHHHHHHhhhh
Q 009343 488 VCDIHKERLAAIKKSVMAT 506 (537)
Q Consensus 488 pTEaHKQRMALIRKsI~s~ 506 (537)
.++..+.-|.+|-|.|..-
T Consensus 259 ~~~~~rr~L~liaKvLQ~l 277 (387)
T 3fay_A 259 LTTDQRRNLGSIAKMLQHA 277 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHHH
Confidence 4677788899999988875
No 333
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=24.73 E-value=1.2e+02 Score=25.99 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHhhhhcCCCCcchhhHHHHHhhc
Q 009343 423 DVEDILVDIAEDFVESITMFG------------CSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 423 DVEELLLeIADDFVDsVvs~A------------CkLAKHRKSdTLEvKDVQLhLERn 467 (537)
++.|+|-+++++++.+.+.+| +.+|-.|........++..+++|+
T Consensus 32 ~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~~l~~~~ 88 (111)
T 3b0c_T 32 IVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVLVERH 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHHHHHHHh
Confidence 334445555555555555443 566666777666777766666554
No 334
>1squ_A CHEX protein; alpha-beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.40A {Thermotoga maritima} SCOP: d.252.1.1 PDB: 1xko_A
Probab=24.54 E-value=1.6e+02 Score=24.83 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=32.7
Q ss_pred CCccCCHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009343 398 GNRILTKRSIQELVNQI---DPSERLDPDVEDILVDIAEDFVESITMFG 443 (537)
Q Consensus 398 ~nrILtKrKLqELVrqI---DP~e~LD~DVEELLLeIADDFVDsVvs~A 443 (537)
---+++++...+|++.+ +....+|+++.++|.||++-.+..+++.-
T Consensus 56 ~~l~~~~~~a~~i~~~mlgG~~~~e~~e~~~sal~Ei~Nii~g~~~~~l 104 (155)
T 1squ_A 56 LIYSFSSETALKVVSAMMGGMEYNQLDELALSAIGELGNMTAGKLAMKL 104 (155)
T ss_dssp EEEEECHHHHHHHHHHHTTTCCCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHhCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445888888888876 23346899999999999986666655543
No 335
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=24.52 E-value=56 Score=25.40 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=14.2
Q ss_pred HhhhhcCCCCcchhhHHHHHhhcc
Q 009343 445 SLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 445 kLAKHRKSdTLEvKDVQLhLERnW 468 (537)
+.+-..+...|+..+..-.|.+.+
T Consensus 119 ~~~d~~~dg~i~~~eF~~~~~~~~ 142 (145)
T 2bl0_B 119 KEVSVSGDGAINYESFVDMLVTGY 142 (145)
T ss_dssp TTCCCCTTSEEEHHHHHHHHHHSS
T ss_pred HHcCCCCCCcEeHHHHHHHHHhcC
Confidence 333344556778887766666543
No 336
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=24.29 E-value=1.4e+02 Score=25.38 Aligned_cols=15 Identities=0% Similarity=0.153 Sum_probs=7.8
Q ss_pred cCCCCcchhhHHHHH
Q 009343 450 RKSDTLEAKDILVHL 464 (537)
Q Consensus 450 RKSdTLEvKDVQLhL 464 (537)
.+...|+..+..-.|
T Consensus 175 d~dG~Is~~EF~~~~ 189 (191)
T 3k21_A 175 NNDGKIDFHEFSEMM 189 (191)
T ss_dssp SSSSSBCHHHHHHHH
T ss_pred CCCCeECHHHHHHHH
Confidence 344556666654433
No 337
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=24.18 E-value=8.8 Score=29.55 Aligned_cols=26 Identities=12% Similarity=0.383 Sum_probs=21.8
Q ss_pred hcCC-CCcchhhHHHHHhhccCcccCC
Q 009343 449 HRKS-DTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 449 HRKS-dTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|- +.|.+-++...||+.||+.|+-
T Consensus 33 dlg~~DSl~~~elv~~lE~~fgi~i~~ 59 (83)
T 2amw_A 33 NIPELDSMAVVNVITALEEYFDFSVDD 59 (83)
T ss_dssp TSTTTTHHHHHHHHHHHHHHTTCCCCT
T ss_pred ccCccCHHHHHHHHHHHHHHhCCeeCH
Confidence 3456 7788889999999999999974
No 338
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=24.17 E-value=1.2e+02 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=14.7
Q ss_pred hcCCCCcchhhHHHHHhhccCc
Q 009343 449 HRKSDTLEAKDILVHLERNWNM 470 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLERnWNI 470 (537)
..+...|+..+..-.|.+.|+-
T Consensus 173 ~d~dG~I~~~EF~~~~~~~~~~ 194 (208)
T 2hpk_A 173 TDKSGKLERTELVHLFRKFWME 194 (208)
T ss_dssp TTCCSSBCHHHHHHHHHHHHC-
T ss_pred CCCCCcCcHHHHHHHHHHHhcC
Confidence 3456678888887777766543
No 339
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}
Probab=24.07 E-value=1.6e+02 Score=24.61 Aligned_cols=40 Identities=23% Similarity=0.126 Sum_probs=25.6
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAK 448 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAK 448 (537)
.+.++++.. .+. |..+.++|.+|+++.++.+-.+.-.|.+
T Consensus 120 ~~~~~~~~a--~~~-D~~t~~~l~~~~~ee~~h~~~l~~~l~~ 159 (170)
T 2vzb_A 120 RYQEIANFT--NGK-DYTTCDIAKHILAEEEEHEQDLQDYLTD 159 (170)
T ss_dssp HHHHHHHHH--TTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--Hcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 234 8888888888888877776666555544
No 340
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=24.04 E-value=53 Score=27.58 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=20.5
Q ss_pred CCcCCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q 009343 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVD 430 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqIDP~e~LD~DVEELLLe 430 (537)
+.+++..|++..|..+++.++ ..|+++-.+.|+.
T Consensus 95 D~d~~G~I~~~el~~~l~~~g--~~ls~~ei~~~~~ 128 (153)
T 3i5g_B 95 DEDGQGFIPEDYLKDLLENMG--DNFSKEEIKNVWK 128 (153)
T ss_dssp CSSCSSCCCHHHHHHHHHSSS--SCCCHHHHHHHHT
T ss_pred ccCCCCeEeHHHHHHHHHHcC--CcCCHHHHHHHHH
Confidence 456667778888887777663 4555553333333
No 341
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=24.03 E-value=1.3e+02 Score=23.61 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=11.6
Q ss_pred CCcCCccCCHHHHHHHHHhh
Q 009343 395 DEFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqI 414 (537)
+.+++..|++..|..+++.+
T Consensus 94 D~d~~G~I~~~el~~~l~~~ 113 (146)
T 2qac_A 94 DNNCTGYLTKSQMKNILTTW 113 (146)
T ss_dssp CTTCSSEEEHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHh
Confidence 33445556666666666655
No 342
>3bhw_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.50A {Magnetospirillum magneticum}
Probab=23.93 E-value=1.8e+02 Score=26.90 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 404 KRSIQELVNQIDPSERLDPDVEDILVDI---------------AEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~DVEELLLeI---------------ADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
|+...++.+++ ..||+++.++|.+. .|.||.+.+..-.+.....+...|+.+|+.-+|++.
T Consensus 57 kr~~~~i~~RL---~~L~~~~l~~l~~~~~~~~~~l~l~a~~~~~~Ll~dF~~eV~~~~~~~~~~~l~~~d~~~F~~~k 132 (209)
T 3bhw_A 57 KRQSSLMRNRL---ETMGPELWQMVRDGSTQVAIQAVFAAAIKHSTLLGDFLDLVVRDQFRMFRPDLPRKMWDQYLEQC 132 (209)
T ss_dssp HHHHHHHHHHH---TTSCHHHHHHHHHSCHHHHHHHHHHHHHHHCHHHHHHHHHTHHHHTTSSSCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCCHHHHHHHHcCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 55566666777 56777766555321 123333333333334444567789999998888765
No 343
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=23.92 E-value=50 Score=26.91 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009343 402 LTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKH 449 (537)
Q Consensus 402 LtKrKLqELVrqI-DP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKH 449 (537)
++...+..||+=| .....++++...-|+.+||.|--.-+...|.-.-.
T Consensus 72 ~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 120 (145)
T 4eoz_A 72 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALC 120 (145)
T ss_dssp SCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC--
T ss_pred CCHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 5677777777766 23445666666668888998876666666654433
No 344
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=23.90 E-value=1.3e+02 Score=22.27 Aligned_cols=62 Identities=6% Similarity=0.093 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhC-CC--C-CCCHH-HHHHHHH-----HHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 404 KRSIQELVNQID-PS--E-RLDPD-VEDILVD-----IAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 404 KrKLqELVrqID-P~--e-~LD~D-VEELLLe-----IADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
..+|.++.+.+| .+ . .|+.+ +..+|.. +-..+-+..+...++.+-..+...|+..+..-.+.
T Consensus 8 ~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 79 (93)
T 1k2h_A 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (93)
T ss_dssp HHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 456777777776 33 3 67754 5555554 32222333344444444445556677766644443
No 345
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=23.88 E-value=94 Score=27.14 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHR 450 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHR 450 (537)
.|+.|+.+-++..-++.|+.+++.+=-++|...|-....+.|+.|
T Consensus 109 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~ 153 (155)
T 1wzv_A 109 ALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR 153 (155)
T ss_dssp HHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 355566655777889999999999888999999999988888765
No 346
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=23.85 E-value=33 Score=34.10 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=11.1
Q ss_pred CCCCcchhhHHHHHhhcc
Q 009343 451 KSDTLEAKDILVHLERNW 468 (537)
Q Consensus 451 KSdTLEvKDVQLhLERnW 468 (537)
+-..++.+||.-.|++-|
T Consensus 333 np~~~t~~di~~il~~a~ 350 (364)
T 3iv7_A 333 NPRPVTRENLSRLLEAAL 350 (364)
T ss_dssp CSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 334566677766666665
No 347
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=23.75 E-value=1.2e+02 Score=29.59 Aligned_cols=45 Identities=2% Similarity=0.138 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 419 RLDPDVEDILVDIA----EDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 419 ~LD~DVEELLLeIA----DDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
.|++++.++|+... =.=+++|++.+|.+|+ .+.|++.|+...+++
T Consensus 338 ~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~---~~~i~~~~l~~~~~~ 386 (387)
T 1ny5_A 338 GFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE---GKFIDRGELSCLVNS 386 (387)
T ss_dssp EECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC---SSEECHHHHHHHC--
T ss_pred CCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC---CCcCcHHHCcHhhhc
Confidence 58899988888432 0125688888988885 347888888655543
No 348
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=23.60 E-value=1.1e+02 Score=25.01 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=16.6
Q ss_pred HHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 444 CSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 444 CkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
++.+-..+...|+..+..-.+...|
T Consensus 151 ~~~~D~d~dG~i~~~eF~~~~~~~~ 175 (191)
T 1uhk_A 151 FRVCDIDESGQLDVDEMTRQHLGFW 175 (191)
T ss_dssp HHHSCCCTTSCEEHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHHh
Confidence 3334444566788888877777766
No 349
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=23.59 E-value=1.4e+02 Score=23.36 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=23.6
Q ss_pred ccCCHHHHHHHHHhhCC---CCCCC-HHHHHHHHHH---------HHHHHHHHHH
Q 009343 400 RILTKRSIQELVNQIDP---SERLD-PDVEDILVDI---------AEDFVESITM 441 (537)
Q Consensus 400 rILtKrKLqELVrqIDP---~e~LD-~DVEELLLeI---------ADDFVDsVvs 441 (537)
..|++..|.++++...+ +..++ .+|+++|.++ .+||+.-+..
T Consensus 26 G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~ 80 (95)
T 1j55_A 26 QTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAA 80 (95)
T ss_dssp TEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 47899999999886432 12333 3566655554 2467765543
No 350
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=23.52 E-value=8.9 Score=31.68 Aligned_cols=25 Identities=12% Similarity=0.387 Sum_probs=21.6
Q ss_pred cCCCCcchhhHHHHHhhccCcccCC
Q 009343 450 RKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 450 RKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
-+-|.|.+-+|...||++||+.||-
T Consensus 46 LGlDSL~~veL~~~LE~~fgi~i~~ 70 (100)
T 1vku_A 46 LGFDSIDVIDLVMFFEDEFALRIED 70 (100)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred cCCchHHHHHHHHHHHHHHCCCCCH
Confidence 4677888889999999999999874
No 351
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=23.49 E-value=1.9e+02 Score=23.61 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=7.6
Q ss_pred cCCCCcchhhHHHHHhh
Q 009343 450 RKSDTLEAKDILVHLER 466 (537)
Q Consensus 450 RKSdTLEvKDVQLhLER 466 (537)
.+...|+..++.-.|..
T Consensus 111 d~~G~i~~~ef~~~~~~ 127 (190)
T 1fpw_A 111 NHDGYITFDEMLTIVAS 127 (190)
T ss_dssp SCSSEEEHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHH
Confidence 33444444444444443
No 352
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=23.46 E-value=78 Score=22.66 Aligned_cols=63 Identities=6% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 404 KRSIQELVNQIDPS--ERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 404 KrKLqELVrqIDP~--e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+.+|.++.+.+|.+ ..|+.+ ...+|..+. .+-+.-+...++.+-..+...|+..+..-.+.+.
T Consensus 2 ~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~ 67 (78)
T 1k9u_A 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLG-STSADEVQRMMAEIDTDGDGFIDFNEFISFCNAN 67 (78)
T ss_dssp -CHHHHHHHHHCTTCSSEECHHHHHHHHHHHH-TCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHC
T ss_pred hHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC-CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHC
Confidence 35688888888764 456643 555655554 3334444444444444455566776665555543
No 353
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=23.44 E-value=92 Score=27.71 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=8.7
Q ss_pred chhhHHHHHhhccCcccC
Q 009343 456 EAKDILVHLERNWNMTLP 473 (537)
Q Consensus 456 EvKDVQLhLERnWNI~IP 473 (537)
+||+-.+.|=..|...|+
T Consensus 112 ~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 112 KVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 444444455555555443
No 354
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=23.41 E-value=37 Score=34.62 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhcCCCCcchhhHHHHHhhccC----cccC-CCCcccc----cc------------cCCCCCchHHHHHHH
Q 009343 439 ITMFGCSLAKHRKSDTLEAKDILVHLERNWN----MTLP-GFSGDEI----KT------------FRKPLVCDIHKERLA 497 (537)
Q Consensus 439 Vvs~ACkLAKHRKSdTLEvKDVQLhLERnWN----I~IP-GfssDEI----R~------------~RK~~pTEaHKQRMA 497 (537)
+++..|.|-++|+-. |.-.+|.-.|++.+| |||| |+..|+- .. +.-..+.+.|-+++.
T Consensus 174 ltTe~clLn~nRNp~-lsk~eie~~Lk~~LG~~kvIWL~~gl~~DdTdgHiD~~arfv~p~~vl~~~~~d~~dp~y~~~~ 252 (377)
T 2ewo_A 174 LVTEMCLLHPSRNPH-LTKEDIEDKLKDYLNCVKVLWVKDGIDPYETNGHIDDVACFIRPGEVACIYTDDKEHPFYQEAK 252 (377)
T ss_dssp EEEHHHHTSTTSCTT-SCHHHHHHHHHHHHCCSEEEEECCCSCTTTTSSCSTTTEEEEETTEEEEBCCCCTTSTTHHHHH
T ss_pred EEEcccccCCCCCCc-cCHHHHHHHHHHHcCCCEEEEcCCccCCCCCCCchhheeEEeCCCEEEEEecCCCCCccHHHHH
Confidence 567899999999977 678899889999888 5677 6555441 11 111133445668888
Q ss_pred HHHHHhhhhh
Q 009343 498 AIKKSVMATE 507 (537)
Q Consensus 498 LIRKsI~s~~ 507 (537)
.+.+.|+...
T Consensus 253 ~~~~~L~~~~ 262 (377)
T 2ewo_A 253 AAYDFLSQQT 262 (377)
T ss_dssp HHHHHHHTCB
T ss_pred HHHHHHHhhh
Confidence 8777777643
No 355
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=23.40 E-value=92 Score=26.23 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCC--CCCHH-HHHHHHHH-----HHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 404 KRSIQELVNQIDPSE--RLDPD-VEDILVDI-----AEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 404 KrKLqELVrqIDP~e--~LD~D-VEELLLeI-----ADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
..+|.++.+.+|.+. .|+.+ ...+|..+ .++-|+.++...++.+-..+...|+..+..-.|.+.
T Consensus 113 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~~ 184 (202)
T 2bec_A 113 RNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKM 184 (202)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTTTS
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHh
Confidence 444555555554332 34433 33333332 234444455444555555667788888887666654
No 356
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=23.36 E-value=15 Score=31.40 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 009343 421 DPDVEDILVDIAEDFVESI 439 (537)
Q Consensus 421 D~DVEELLLeIADDFVDsV 439 (537)
++++.+.+.++.+.+.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~ 127 (228)
T 3nnr_A 109 DPRLRQDYREFTNRCLAAI 127 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444433
No 357
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=23.28 E-value=1e+02 Score=24.67 Aligned_cols=18 Identities=0% Similarity=0.353 Sum_probs=10.3
Q ss_pred hcCCCCcchhhHHHHHhh
Q 009343 449 HRKSDTLEAKDILVHLER 466 (537)
Q Consensus 449 HRKSdTLEvKDVQLhLER 466 (537)
..+...|+..+..-.|.+
T Consensus 148 ~~~dg~i~~~eF~~~~~~ 165 (169)
T 3qrx_A 148 RNDDNEIDEDEFIRIMKK 165 (169)
T ss_dssp CSSSSCBCHHHHHHHHC-
T ss_pred CCCCCCEeHHHHHHHHHh
Confidence 345556777776655554
No 358
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=23.24 E-value=46 Score=35.43 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=26.4
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 009343 408 QELVNQIDPSERLDPDVEDILVDIAEDFVES 438 (537)
Q Consensus 408 qELVrqIDP~e~LD~DVEELLLeIADDFVDs 438 (537)
.+++.+|+.+..||+|.++.|.++.++|.+.
T Consensus 477 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 507 (510)
T 2ck3_A 477 QALLGKIRTDGKISEESDAKLKEIVTNFLAG 507 (510)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3667777778899999999999999999764
No 359
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=23.10 E-value=1.7e+02 Score=23.88 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 436 VESITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 436 VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
.+..+..+.++.-..+...|+..++.-.|...+
T Consensus 90 ~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~ 122 (183)
T 1s6c_A 90 VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIY 122 (183)
T ss_dssp HHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHH
Confidence 344556666666667777888888877776653
No 360
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=23.03 E-value=1e+02 Score=25.68 Aligned_cols=78 Identities=9% Similarity=0.028 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCcc-------ccccc-CCCCCchHHHHHH
Q 009343 425 EDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGD-------EIKTF-RKPLVCDIHKERL 496 (537)
Q Consensus 425 EELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfssD-------EIR~~-RK~~pTEaHKQRM 496 (537)
++.|..|+|+|.+.|...-. |+..-. .+.....-+|..-|-.++-|-... .++.. .....+++|..|.
T Consensus 13 ~~~i~~lv~~FY~~v~~Dp~-l~~~F~---~d~~~~~~~l~~Fl~~~~GGp~~Y~~~~G~p~l~~~H~~~~I~~~~fd~w 88 (128)
T 2bkm_A 13 EETVAKLVEAFYRRVAAHPD-LRPIFP---DDLTETAHKQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAW 88 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-TGGGSC---SCCHHHHHHHHHHHHHHTTSCCHHHHHHCCCCHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH-HHHHCc---cCHHHHHHHHHHHHHHHcCCCCccccccCCccHHHhhcCCCCCHHHHHHH
Confidence 67889999999999887544 444333 234444444444444444332211 22111 1234677777775
Q ss_pred H-HHHHHhhhh
Q 009343 497 A-AIKKSVMAT 506 (537)
Q Consensus 497 A-LIRKsI~s~ 506 (537)
. +++++|+..
T Consensus 89 l~~~~~al~e~ 99 (128)
T 2bkm_A 89 LACMRAAMDEI 99 (128)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 5 788888764
No 361
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=22.98 E-value=1.4e+02 Score=21.78 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=12.2
Q ss_pred cCCc-cCCHHHHHHHHHh
Q 009343 397 FGNR-ILTKRSIQELVNQ 413 (537)
Q Consensus 397 ~~nr-ILtKrKLqELVrq 413 (537)
+++. .|++..|..+++.
T Consensus 23 d~~G~~i~~~el~~~l~~ 40 (90)
T 1k8u_A 23 EGDKHTLSKKELKELIQK 40 (90)
T ss_dssp SSCTTEEEHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHH
Confidence 4444 7888888888885
No 362
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=22.92 E-value=47 Score=24.06 Aligned_cols=20 Identities=10% Similarity=0.338 Sum_probs=13.7
Q ss_pred CCcCCccCCHHHHHHHHHhh
Q 009343 395 DEFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqI 414 (537)
+.+++..|++..|..+++.+
T Consensus 18 D~d~~G~i~~~el~~~l~~~ 37 (81)
T 1c7v_A 18 DANGDGVIDFDEFKFIMQKV 37 (81)
T ss_dssp SCSGGGEECHHHHHHHSSTT
T ss_pred CCCCCCcCCHHHHHHHHHHh
Confidence 34555677777777777766
No 363
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=22.87 E-value=92 Score=29.41 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHH---H-HHHHHHHHHHHHhhhhcCCCCcchhhHHHHH
Q 009343 418 ERLDPDVEDILVDIA---E-DFVESITMFGCSLAKHRKSDTLEAKDILVHL 464 (537)
Q Consensus 418 e~LD~DVEELLLeIA---D-DFVDsVvs~ACkLAKHRKSdTLEvKDVQLhL 464 (537)
..|++++.++|.+.. + .-+.+|++.+|.+|+ .+.|+.+||...+
T Consensus 202 ~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l~~~~ 249 (304)
T 1ojl_A 202 KGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLT---GEYISERELPLAI 249 (304)
T ss_dssp CCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBCGGGSCGGG
T ss_pred cCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCC---CCcccHHhhhhhh
Confidence 579999999998765 1 357789999998886 3578888885444
No 364
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=22.84 E-value=2.6e+02 Score=21.41 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=25.7
Q ss_pred CccCCHHHHHHHHHhhCC---CCCCCHH-HHHHHHHH---------HHHHHHHHHH
Q 009343 399 NRILTKRSIQELVNQIDP---SERLDPD-VEDILVDI---------AEDFVESITM 441 (537)
Q Consensus 399 nrILtKrKLqELVrqIDP---~e~LD~D-VEELLLeI---------ADDFVDsVvs 441 (537)
...|++..|..+++..-+ +..++++ |++++.++ -+||+.-+..
T Consensus 25 ~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~ 80 (92)
T 3rm1_A 25 KHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAM 80 (92)
T ss_dssp TTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHH
T ss_pred cCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence 348999999999998211 2345554 55544443 3467665543
No 365
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=22.73 E-value=30 Score=32.55 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhhhcC--CCCcchhhHHHHHhh
Q 009343 432 AEDFVESITMFGCSLAKHRK--SDTLEAKDILVHLER 466 (537)
Q Consensus 432 ADDFVDsVvs~ACkLAKHRK--SdTLEvKDVQLhLER 466 (537)
..+.+..++...+++|+..+ -+ ++...+...|+.
T Consensus 213 ~~~l~~~~~~E~~~va~a~G~~~~-~~~~~~~~~~~~ 248 (312)
T 3hn2_A 213 SRKLVRGIMLEVIAGANAQGLATF-IADGYVDDMLEF 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSSC-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccC-CCHHHHHHHHHH
Confidence 34555666667777777777 44 443444555543
No 366
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=22.65 E-value=17 Score=32.13 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCccc-CC
Q 009343 435 FVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTL-PG 474 (537)
Q Consensus 435 FVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~I-PG 474 (537)
-+|.++..||+.+- |+..||.-.|-++|-||| ||
T Consensus 66 ~~Dp~l~~Aa~~sg------l~~~~l~~~LP~eltlWvDPg 100 (120)
T 3e9v_A 66 KMDPIISRVASQIG------LSQPQLHQLLPSELTLWVDPY 100 (120)
T ss_dssp SCCHHHHHHHHHTT------CCHHHHHHHSCTTEEEEEETT
T ss_pred CCCHHHHHHHHHhC------CCHHHHHHhCCcccEEEECCC
Confidence 35677888887754 789999878999999998 55
No 367
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=22.60 E-value=83 Score=27.06 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhcCCCCcchhhHHHHHhhcc
Q 009343 438 SITMFGCSLAKHRKSDTLEAKDILVHLERNW 468 (537)
Q Consensus 438 sVvs~ACkLAKHRKSdTLEvKDVQLhLERnW 468 (537)
..+..+.++.-..+...|+..++.-.|....
T Consensus 93 ~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~ 123 (211)
T 2ggz_A 93 QKLKWYFKLYDADGNGSIDKNELLDMFMAVQ 123 (211)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence 3455566666666777899999887777654
No 368
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=22.55 E-value=1.4e+02 Score=27.80 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCc
Q 009343 402 LTKRSIQELVNQID-PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNM 470 (537)
Q Consensus 402 LtKrKLqELVrqID-P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI 470 (537)
+....++.||+=|= ....++++...-||.+||.|--.-+...|.-.-.+.-+.-.+.++ |.|-..||+
T Consensus 221 ~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~-l~~A~~~~~ 289 (312)
T 3hqi_A 221 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI-LILADLHSA 289 (312)
T ss_dssp SCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHH-HHHHHHTTC
T ss_pred CCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHH-HHHHHHhCC
Confidence 56778888888772 233455566666888999987666666665544444333344554 444444443
No 369
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=22.39 E-value=74 Score=23.23 Aligned_cols=20 Identities=5% Similarity=0.263 Sum_probs=11.9
Q ss_pred CcCCccCCHHHHHHHHHhhC
Q 009343 396 EFGNRILTKRSIQELVNQID 415 (537)
Q Consensus 396 e~~nrILtKrKLqELVrqID 415 (537)
.+++..|++..|..+++.+.
T Consensus 22 ~d~~G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 22 TNGDGKISSSELGDALKTLG 41 (86)
T ss_dssp TTCSSEEEHHHHHHHHHTTT
T ss_pred CCCCCCcCHHHHHHHHHHcC
Confidence 34455566666666666654
No 370
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G*
Probab=22.38 E-value=2.8e+02 Score=27.00 Aligned_cols=40 Identities=30% Similarity=0.489 Sum_probs=25.3
Q ss_pred HHHHHHHHHhh---CCCCCCCH-------HHH---HHHHHHHHHHHHHHHHHH
Q 009343 404 KRSIQELVNQI---DPSERLDP-------DVE---DILVDIAEDFVESITMFG 443 (537)
Q Consensus 404 KrKLqELVrqI---DP~e~LD~-------DVE---ELLLeIADDFVDsVvs~A 443 (537)
|.-|.++|++| +.+..+|+ |++ +.|.+++++|++.|+...
T Consensus 98 ~~~L~~~i~~i~~~~~~~EiDP~ki~~~~~~~~n~~~L~~~~~~~~~~I~~s~ 150 (334)
T 1wer_A 98 HHALKDSILKIMESKQSCELSPSKLEKNEDVNTNLTHLLNILSELVEKIFMAS 150 (334)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCGGGTCSSCCHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHcCCCCeeeCHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655 22344444 333 578899999999998643
No 371
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=22.37 E-value=19 Score=34.48 Aligned_cols=72 Identities=8% Similarity=0.126 Sum_probs=42.5
Q ss_pred CcCCccC----CHHHHHHHHHhhCCCC-------CCCHHHHHHHHHHHHHH--HHHHHHHHHHhhhhcCCCCcchhhHHH
Q 009343 396 EFGNRIL----TKRSIQELVNQIDPSE-------RLDPDVEDILVDIAEDF--VESITMFGCSLAKHRKSDTLEAKDILV 462 (537)
Q Consensus 396 e~~nrIL----tKrKLqELVrqIDP~e-------~LD~DVEELLLeIADDF--VDsVvs~ACkLAKHRKSdTLEvKDVQL 462 (537)
+++.+|+ ++.+|+++++++.... .=.++|++++-++.++| ||-+++.|. .........++.+|...
T Consensus 51 ~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG-~~~~~~~~~~~~e~w~~ 129 (273)
T 4fgs_A 51 AEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAG-GGSMLPLGEVTEEQYDD 129 (273)
T ss_dssp HTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEEEECCC-CCCCCCTTSCCHHHHHH
T ss_pred HCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC-CCCCCChhhccHHHHHH
Confidence 4455554 6888999999986532 22255777777777777 444444443 23334445566666666
Q ss_pred HHhhcc
Q 009343 463 HLERNW 468 (537)
Q Consensus 463 hLERnW 468 (537)
.++-|+
T Consensus 130 ~~~vNl 135 (273)
T 4fgs_A 130 TFDRNV 135 (273)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 655543
No 372
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=22.37 E-value=1e+02 Score=21.81 Aligned_cols=21 Identities=10% Similarity=0.098 Sum_probs=12.0
Q ss_pred hhhcCCCCcchhhHHHHHhhc
Q 009343 447 AKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 447 AKHRKSdTLEvKDVQLhLERn 467 (537)
+-..+...|+..+..-.+.+.
T Consensus 52 ~d~~~~g~i~~~eF~~~~~~~ 72 (77)
T 2joj_A 52 YDREGNGYIGFDDFLDIMTEK 72 (77)
T ss_dssp HCCSSSSEEEHHHHHHHHTHH
T ss_pred HCCCCCCcCcHHHHHHHHHHH
Confidence 333455567777775555543
No 373
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=22.34 E-value=93 Score=28.33 Aligned_cols=44 Identities=11% Similarity=0.245 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHH---------HHHHHHHhhhhc
Q 009343 404 KRSIQELVNQIDPSERLDPDVEDILVDIAEDFVES---------ITMFGCSLAKHR 450 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDs---------Vvs~ACkLAKHR 450 (537)
++.+.+|+++++-.. +.+.+.+.++|++..+| ++.|++.||++-
T Consensus 71 ~~~f~~~~~~L~it~---~~a~~~F~~Va~elF~dGiNWGRIVaLfaF~g~La~~~ 123 (169)
T 4aq3_A 71 RGDFAEMSSQLHLTP---FTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVES 123 (169)
T ss_dssp HHHHHHHHHHCCCCT---TTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445677777764222 25778888999987654 566888888754
No 374
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=22.26 E-value=2.5e+02 Score=22.91 Aligned_cols=42 Identities=14% Similarity=0.373 Sum_probs=26.6
Q ss_pred ccCCHHHHHHHHHh-hCC--CCCCCHH-HHHHHHHH---------HHHHHHHHHH
Q 009343 400 RILTKRSIQELVNQ-IDP--SERLDPD-VEDILVDI---------AEDFVESITM 441 (537)
Q Consensus 400 rILtKrKLqELVrq-IDP--~e~LD~D-VEELLLeI---------ADDFVDsVvs 441 (537)
..|++..|..+++. +.. ...++++ |+++|.++ .+|||.-+..
T Consensus 30 G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~ 84 (104)
T 3zwh_A 30 FKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSS 84 (104)
T ss_dssp TSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred CeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence 58999999999985 532 2344554 55555554 3477765543
No 375
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=22.25 E-value=81 Score=28.29 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=27.1
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHH-HHHHHHHHHH---HHHHHhhh
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVD-IAEDFVESIT---MFGCSLAK 448 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLe-IADDFVDsVv---s~ACkLAK 448 (537)
.|+.|+.+-++..-++.|+.+++.+ =-++|...|- ...+++|+
T Consensus 125 si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~~~~~~ 171 (172)
T 2y9m_A 125 AVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERERINN 171 (172)
T ss_dssp HHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhc
Confidence 3566666667788899999998887 4556655544 44444443
No 376
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=22.07 E-value=1.2e+02 Score=31.10 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc--cCC--CCc
Q 009343 404 KRSIQELVNQIDPSE--RLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT--LPG--FSG 477 (537)
Q Consensus 404 KrKLqELVrqIDP~e--~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~--IPG--fss 477 (537)
-+++++|.+.+.... .-|..+-|+..-+.+-|+.--+.+++.++..=..--|++.+|.-.+...|++. -|| ||+
T Consensus 188 ~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~ri~~l~pG~G~GG 267 (431)
T 3ojo_A 188 IEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGG 267 (431)
T ss_dssp HHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCCCCCCSCCCC
T ss_pred HHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCCCcccCCCCCCccc
Confidence 356777777765432 34566777777777777777676666555443333356666665666665543 354 565
Q ss_pred c
Q 009343 478 D 478 (537)
Q Consensus 478 D 478 (537)
-
T Consensus 268 ~ 268 (431)
T 3ojo_A 268 H 268 (431)
T ss_dssp C
T ss_pred c
Confidence 3
No 377
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.94 E-value=39 Score=27.72 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhCC
Q 009343 404 KRSIQELVNQIDP 416 (537)
Q Consensus 404 KrKLqELVrqIDP 416 (537)
+.+|.++.+.+|.
T Consensus 21 ~~~~~~~F~~~D~ 33 (110)
T 1iq3_A 21 REYYVNQFRSLQP 33 (110)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCC
Confidence 4455555555554
No 378
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=21.81 E-value=53 Score=32.41 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=50.6
Q ss_pred HHHHHHHHhhCCCCCCCHHHH-HH---------HHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 405 RSIQELVNQIDPSERLDPDVE-DI---------LVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 405 rKLqELVrqIDP~e~LD~DVE-EL---------LLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
.-|++|.+.+|-...||.|.. |+ -.+.+|+.|-.++.....+-+.-+.-.||+.||+-.|.. -++.+.|
T Consensus 149 ~~l~~L~e~~D~~ividNe~L~~i~~~~l~i~~af~~~n~~l~~~v~~it~~ir~pG~iNvD~~dv~t~l~~-~g~~~~g 227 (320)
T 1ofu_A 149 EGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSE-MGMAMMG 227 (320)
T ss_dssp HHHHHHHTTCSEEEEEEHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSCSSSSCCHHHHHHHHTT-CEEEEEE
T ss_pred HHHHHHHHhCCEEEEEecHHhhhhhhcCCCHHHHHHHHHHHHHHHhcccHhhcccCCceeecHHHHHHhccC-CCeeEEE
Confidence 346677777777666666642 11 145566667777766666777778888999999999986 5788887
Q ss_pred CCc
Q 009343 475 FSG 477 (537)
Q Consensus 475 fss 477 (537)
++.
T Consensus 228 ~g~ 230 (320)
T 1ofu_A 228 TGC 230 (320)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 379
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=21.75 E-value=38 Score=27.89 Aligned_cols=27 Identities=19% Similarity=0.516 Sum_probs=22.7
Q ss_pred hhcCCCCcchhhHHHHHhhccCcccCC
Q 009343 448 KHRKSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 448 KHRKSdTLEvKDVQLhLERnWNI~IPG 474 (537)
..-+-|.|++-+|...||+.||+.||-
T Consensus 54 ~dLGlDSL~~veLi~~lE~~fgi~i~~ 80 (101)
T 4dxe_H 54 DDLGADSLDIAELVMELEDEFGTEIPD 80 (101)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred hhcCCCcHHHHHHHHHHHHHHCCCCCH
Confidence 344777888999999999999999874
No 380
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.73 E-value=69 Score=23.80 Aligned_cols=15 Identities=0% Similarity=0.217 Sum_probs=6.6
Q ss_pred ccCCHHHHHHHHHhh
Q 009343 400 RILTKRSIQELVNQI 414 (537)
Q Consensus 400 rILtKrKLqELVrqI 414 (537)
..|++..|..+++.+
T Consensus 35 G~i~~~el~~~l~~~ 49 (90)
T 1avs_A 35 GDISTKELGTVMRML 49 (90)
T ss_dssp SEECHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHh
Confidence 344444444444443
No 381
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=21.73 E-value=1.7e+02 Score=24.62 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=14.4
Q ss_pred HHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 440 TMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 440 vs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+..++++.-..+...|+..++.-.|...
T Consensus 116 l~~~F~~~D~d~dG~Is~~El~~~l~~~ 143 (202)
T 2bec_A 116 LHYAFQLYDLDRDGKISRHEMLQVLRLM 143 (202)
T ss_dssp HHHHHHHHCTTCSSEECHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3444444444455556666665555543
No 382
>2fu2_A Hypothetical protein SPY2152; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.15A {Streptococcus pyogenes}
Probab=21.72 E-value=52 Score=27.63 Aligned_cols=35 Identities=9% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHHHHHHhh--CCCCCCCHHHHHHHHHHHHHHHHH
Q 009343 404 KRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVES 438 (537)
Q Consensus 404 KrKLqELVrqI--DP~e~LD~DVEELLLeIADDFVDs 438 (537)
++.|.+++.++ |+..+.|++..++|++.|++-...
T Consensus 4 ~~~L~~~i~~ay~d~ev~~~~~L~~~il~aa~~L~k~ 40 (102)
T 2fu2_A 4 EKEILDALSKVYSEQVIQADDYFRQAIFELASQLEKE 40 (102)
T ss_dssp HHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhhccCHHHHHHHHHHHHHhhcC
Confidence 45677777777 778899999999999999887654
No 383
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=21.61 E-value=2e+02 Score=29.78 Aligned_cols=16 Identities=6% Similarity=0.362 Sum_probs=7.2
Q ss_pred CccCCHHHHHHHHHhh
Q 009343 399 NRILTKRSIQELVNQI 414 (537)
Q Consensus 399 nrILtKrKLqELVrqI 414 (537)
+..|++..|.++++.+
T Consensus 326 dG~Is~~EL~~~L~~l 341 (450)
T 3sg6_A 326 DGTITTKELGTVMRSL 341 (450)
T ss_dssp SSEECHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHh
Confidence 3344444444444443
No 384
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=21.61 E-value=78 Score=24.08 Aligned_cols=14 Identities=7% Similarity=0.328 Sum_probs=8.6
Q ss_pred cCCHHHHHHHH-Hhh
Q 009343 401 ILTKRSIQELV-NQI 414 (537)
Q Consensus 401 ILtKrKLqELV-rqI 414 (537)
.|++..|..++ +.+
T Consensus 28 ~I~~~El~~~l~~~~ 42 (93)
T 1xk4_A 28 AVYRDDLKKLLETES 42 (93)
T ss_dssp CBCHHHHHHHHHHHS
T ss_pred eECHHHHHHHHHHHC
Confidence 66666666666 444
No 385
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=21.44 E-value=96 Score=23.57 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=7.7
Q ss_pred cCCCCcchhhHHHHH
Q 009343 450 RKSDTLEAKDILVHL 464 (537)
Q Consensus 450 RKSdTLEvKDVQLhL 464 (537)
.+...|+..+..-.|
T Consensus 92 ~~dg~i~~~eF~~~~ 106 (109)
T 5pal_A 92 DHDGKIGADEFAKMV 106 (109)
T ss_dssp TCSSSEEHHHHHHHH
T ss_pred CCCCcCcHHHHHHHH
Confidence 344556666654444
No 386
>2ig3_A Group III truncated haemoglobin; truncated hemoglobin, 2-ON-2 globin, oxygen storage-transpor; HET: HEM; 2.15A {Campylobacter jejuni}
Probab=21.43 E-value=51 Score=28.38 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc--hhhHHHHHhhccCccc---C---CCCcccccccCCCC-CchHHHHH
Q 009343 425 EDILVDIAEDFVESITMFGCSLAKHRKSDTLE--AKDILVHLERNWNMTL---P---GFSGDEIKTFRKPL-VCDIHKER 495 (537)
Q Consensus 425 EELLLeIADDFVDsVvs~ACkLAKHRKSdTLE--vKDVQLhLERnWNI~I---P---GfssDEIR~~RK~~-pTEaHKQR 495 (537)
++.|..|+|.|.+.|...-. |+-... +.+. -.|+.-|++|.++.+- - .|.+...+...... .+++|..|
T Consensus 8 ~~~i~~LV~~FY~~v~~Dp~-l~p~F~-~~~~~~~~d~~~~~~~l~~F~~~~lgGp~~Y~G~pm~~H~~l~~I~~~~fd~ 85 (127)
T 2ig3_A 8 QESIAKLMEIFYEKVRKDKD-LGPIFN-NAIGTSDEEWKEHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEI 85 (127)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-HHHHHH-HHHCSSHHHHHHHHHHHHHHHHHHHTSCSCCCSCHHHHHHSSCCCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhChh-HHHHHh-ccccccccCHHHHHHHHHHHHHHHhCCCCCCCCCCHHHhcCCCCCCHHHHHH
Confidence 45577777888887776432 222221 1110 1256666666555432 1 23333333222334 56677666
Q ss_pred H-HHHHHHhhhh
Q 009343 496 L-AAIKKSVMAT 506 (537)
Q Consensus 496 M-ALIRKsI~s~ 506 (537)
. .++++++...
T Consensus 86 Wl~~~~~al~e~ 97 (127)
T 2ig3_A 86 WLKLFEESLNIV 97 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 4 4778777764
No 387
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=21.38 E-value=33 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009343 417 SERLDPDVEDILVDIAEDFVESITMFGCSLAK 448 (537)
Q Consensus 417 ~e~LD~DVEELLLeIADDFVDsVvs~ACkLAK 448 (537)
...=|++|.++|++|+||=.+-+..+---|-+
T Consensus 42 ~~~~d~~~k~vl~~i~~EEkeH~g~~lelLrr 73 (95)
T 3k6c_A 42 NACKDKELKAILAHNRDEEKEHAAMLLEWIRR 73 (95)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999877777766555544
No 388
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=21.32 E-value=2.4e+02 Score=22.99 Aligned_cols=14 Identities=0% Similarity=0.223 Sum_probs=6.8
Q ss_pred cCCCCcchhhHHHH
Q 009343 450 RKSDTLEAKDILVH 463 (537)
Q Consensus 450 RKSdTLEvKDVQLh 463 (537)
.+...|+..+..-.
T Consensus 124 d~dg~i~~~eF~~~ 137 (173)
T 1alv_A 124 DEGGNMDFDNFISC 137 (173)
T ss_dssp CSSSCBCHHHHHHH
T ss_pred CCCCcCcHHHHHHH
Confidence 34445665555333
No 389
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=21.23 E-value=2e+02 Score=30.88 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=48.6
Q ss_pred cCCccCCHHHHHHHHHhh-C-----CCCCCCHHHHHHHHHHH----------HHHHHHH-----HHHHHHhhhhcCCCCc
Q 009343 397 FGNRILTKRSIQELVNQI-D-----PSERLDPDVEDILVDIA----------EDFVESI-----TMFGCSLAKHRKSDTL 455 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqI-D-----P~e~LD~DVEELLLeIA----------DDFVDsV-----vs~ACkLAKHRKSdTL 455 (537)
+++..|++..|.++++.+ . ....++++..+.|+.++ +||+.-+ +..++++.-..++..|
T Consensus 543 d~dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~~~l~~~F~~~D~d~dG~I 622 (714)
T 3bow_A 543 GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTM 622 (714)
T ss_dssp GGGTSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHHHHHHHHHHHHHCTTCCSSE
T ss_pred CCCCcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence 456678888888888886 1 24456666555555554 3665433 4456666666777889
Q ss_pred chhhHHHHHhhccCcc
Q 009343 456 EAKDILVHLERNWNMT 471 (537)
Q Consensus 456 EvKDVQLhLERnWNI~ 471 (537)
+.+++.-.|+. .|+.
T Consensus 623 s~~El~~~L~~-~G~~ 637 (714)
T 3bow_A 623 NSYEMRKALEE-AGFK 637 (714)
T ss_dssp EHHHHHHHHHH-TTEE
T ss_pred CHHHHHHHHHH-cCCC
Confidence 99999888864 4544
No 390
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=21.11 E-value=62 Score=22.97 Aligned_cols=18 Identities=0% Similarity=0.016 Sum_probs=9.5
Q ss_pred cCCccCCHHHHHHHHHhh
Q 009343 397 FGNRILTKRSIQELVNQI 414 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqI 414 (537)
++...|++..|..+++.+
T Consensus 19 d~~G~i~~~el~~~l~~~ 36 (77)
T 2joj_A 19 NKTGSIDYHELKVAMRAL 36 (77)
T ss_dssp SSSSEEEHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHh
Confidence 334455555555555555
No 391
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=21.10 E-value=2.2e+02 Score=22.83 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=13.0
Q ss_pred cCCc-cCCHHHHHHHHH-hhC
Q 009343 397 FGNR-ILTKRSIQELVN-QID 415 (537)
Q Consensus 397 ~~nr-ILtKrKLqELVr-qID 415 (537)
++.. .|++..|.++++ .+.
T Consensus 25 dgdG~~Is~~El~~~l~~~lg 45 (113)
T 1xk4_C 25 LGHPDTLNQGEFKELVRKDLQ 45 (113)
T ss_dssp SSSTTSBCHHHHHHHHHHHTT
T ss_pred CCCCCEECHHHHHHHHHHHhh
Confidence 3444 788888888887 553
No 392
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=21.08 E-value=79 Score=25.53 Aligned_cols=39 Identities=10% Similarity=0.021 Sum_probs=25.3
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009343 405 RSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFG 443 (537)
Q Consensus 405 rKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~A 443 (537)
+.+.+.++.+.....++.+..+.|..+..++|++++..+
T Consensus 17 ~~~r~~~~~~~~~~~~~~~~~~~l~~il~~l~~Nai~h~ 55 (145)
T 1th8_A 17 SFARVTVAAFVAQLDPTMDELTEIKTVVSEAVTNAIIHG 55 (145)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 344555555555556777777778888887777766554
No 393
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=21.06 E-value=68 Score=25.19 Aligned_cols=18 Identities=0% Similarity=0.067 Sum_probs=9.3
Q ss_pred cCCccCCHHHHHHHHHhh
Q 009343 397 FGNRILTKRSIQELVNQI 414 (537)
Q Consensus 397 ~~nrILtKrKLqELVrqI 414 (537)
+++..|++..|..+++.+
T Consensus 95 d~~G~I~~~el~~~l~~~ 112 (148)
T 1m45_A 95 ESTGKVSVGDLRYMLTGL 112 (148)
T ss_dssp SSSSEEEHHHHHHHHHHS
T ss_pred CCCCcCCHHHHHHHHHHc
Confidence 444455555555555544
No 394
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=21.05 E-value=1.1e+02 Score=20.82 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHhhCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 406 SIQELVNQIDPS--ERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 406 KLqELVrqIDP~--e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+|.++.+.+|.+ ..|+.+ ...+|..+...+-+.-+....+.+-..+...|+..+..-.+.+
T Consensus 2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 65 (67)
T 1tiz_A 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 467777777654 356543 5555554443344444455555555556666777776655554
No 395
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=21.00 E-value=78 Score=29.12 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHH----HHHHHHHhhhhcCCCCcchhhH
Q 009343 404 KRSIQELVNQIDPS-ERLDPDVEDILVDIAEDFVES----ITMFGCSLAKHRKSDTLEAKDI 460 (537)
Q Consensus 404 KrKLqELVrqIDP~-e~LD~DVEELLLeIADDFVDs----Vvs~ACkLAKHRKSdTLEvKDV 460 (537)
.+++.+|++.+... ..+++.....++++++.++.. .+..++.||+.-+-+.-++.|+
T Consensus 144 ~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~ 205 (287)
T 3pef_A 144 YDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDV 205 (287)
T ss_dssp HHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 46788899888653 345555666778888888776 6677888999877665444444
No 396
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=20.88 E-value=71 Score=32.65 Aligned_cols=72 Identities=14% Similarity=0.040 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCccc
Q 009343 404 KRSIQELVNQIDPSERLDPDV-----------EDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTL 472 (537)
Q Consensus 404 KrKLqELVrqIDP~e~LD~DV-----------EELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~I 472 (537)
..-|++|++.+|-...||.|. ++ -.+.+|+.|-.++.....+-+.-+.-.||+.||+-.|.. .++.+
T Consensus 148 ~l~l~~L~e~~D~~ividNeaL~~i~~~~l~i~~-af~~~N~li~~~vs~it~~ir~pG~iNvD~~dv~t~L~~-~g~a~ 225 (382)
T 1rq2_A 148 ENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIMSG-AGTAL 225 (382)
T ss_dssp HHHHHHHHHHCSEEEEEEHHHHTTSSCTTCCHHH-HHHHHHHHHHHHHHHHHHHHHSBCSSCCCHHHHHHHHTT-CEEEE
T ss_pred HHHHHHHHHhCCEEEEEechhHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHccCCceeccHHHHHHhccC-CCeeE
Confidence 344777888887655554442 23 367778888888877777777788888999999999976 67888
Q ss_pred CCCCc
Q 009343 473 PGFSG 477 (537)
Q Consensus 473 PGfss 477 (537)
.|++.
T Consensus 226 ~g~g~ 230 (382)
T 1rq2_A 226 MGIGS 230 (382)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 77764
No 397
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.34 E-value=21 Score=30.50 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccC-cccCCCCcccccccCCCCCchHHHHHHHHHHHHhhhh
Q 009343 428 LVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWN-MTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKSVMAT 506 (537)
Q Consensus 428 LLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWN-I~IPGfssDEIR~~RK~~pTEaHKQRMALIRKsI~s~ 506 (537)
||+-.+..+|.|+..|-.-|+.|-.. | +|||+-.||.--. -.|-.|- ||..-.-|-.++..-.+-+..|.|.++.+
T Consensus 8 lleklekildevtdgapdeareriek-l-akdvkdeleegdaknmiekfr-demeqmykdapnavmeqlleeiekllkka 84 (101)
T 2lse_A 8 LLEKLEKILDEVTDGAPDEARERIEK-L-AKDVKDELEEGDAKNMIEKFR-DEMEQMYKDAPNAVMEQLLEEIEKLLKKA 84 (101)
Confidence 33444445555555565555555433 2 5555555554211 1122333 44433334667777777788888887764
No 398
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=20.83 E-value=45 Score=35.64 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=25.2
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 009343 408 QELVNQIDPSERLDPDVEDILVDIAEDFVES 438 (537)
Q Consensus 408 qELVrqIDP~e~LD~DVEELLLeIADDFVDs 438 (537)
.+++.+|+.+..||+|.++.|.++.++|.+.
T Consensus 482 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 512 (515)
T 2r9v_A 482 QDILDDIKTKKELTSETEEKLKKAIEEFKTT 512 (515)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 3666777777889999999999999999763
No 399
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=20.82 E-value=2.3e+02 Score=23.31 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=15.3
Q ss_pred CCcCCccCCHHHHHHHHHhh
Q 009343 395 DEFGNRILTKRSIQELVNQI 414 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqI 414 (537)
+.+++..|++..|..+++.+
T Consensus 23 D~d~dG~i~~~E~~~~l~~~ 42 (191)
T 2ccm_A 23 DCNHDGVIEWDDFELAIKKI 42 (191)
T ss_dssp CTTCSSEECHHHHHHHHHHH
T ss_pred cCCCCCeeeHHHHHHHHHHH
Confidence 55667778888888888877
No 400
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin, oxido calmodulin-binding, FAD, FMN, iron, metal-binding, NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A* 3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A* 3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A* 1m8h_A* 1m8i_A* 1m9t_A* ...
Probab=20.79 E-value=99 Score=32.73 Aligned_cols=19 Identities=32% Similarity=0.421 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHhhhhh
Q 009343 489 CDIHKERLAAIKKSVMATE 507 (537)
Q Consensus 489 TEaHKQRMALIRKsI~s~~ 507 (537)
.++|..|++.|++.|+.+-
T Consensus 88 ~~~~~~Rl~eV~~eI~~tG 106 (433)
T 3e7m_A 88 IEEHLARLEAVTKEIETTG 106 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHhhC
Confidence 5789999999999988863
No 401
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=20.74 E-value=35 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.0
Q ss_pred CCCCcchhhHHHHHhhccCcccCC
Q 009343 451 KSDTLEAKDILVHLERNWNMTLPG 474 (537)
Q Consensus 451 KSdTLEvKDVQLhLERnWNI~IPG 474 (537)
|-+.|.+-++...||+.||+.||-
T Consensus 37 G~DSL~~vel~~~le~~fgi~i~~ 60 (83)
T 1or5_A 37 GYDSLALLETAAVLQQRYGIALTD 60 (83)
T ss_dssp SCCHHHHHHHHHHHHTTSCCCCSH
T ss_pred CCCHHHHHHHHHHHHHHHCCccCH
Confidence 677788889999999999999874
No 402
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.72 E-value=2.4e+02 Score=25.19 Aligned_cols=63 Identities=16% Similarity=0.347 Sum_probs=38.1
Q ss_pred CHHHHHHHHHhhCCCCCCCHHHHHHHH----------------HHH-HHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHh
Q 009343 403 TKRSIQELVNQIDPSERLDPDVEDILV----------------DIA-EDFVESITMFGCSLAKHRKSDTLEAKDILVHLE 465 (537)
Q Consensus 403 tKrKLqELVrqIDP~e~LD~DVEELLL----------------eIA-DDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLE 465 (537)
.|..++.|.++|.-. ++.|.-+=| +|| .+|+|.+ .+|++ ++.+ .+|++-.+.|=
T Consensus 50 ~keA~ral~krl~~~---n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el----~~l~~-~~~~-~~Vk~kil~li 120 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHK---VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV----RAVIK-NKAH-PKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH----HHHHH-TTCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH----HHHHc-cCCC-HHHHHHHHHHH
Confidence 567777777777432 344432222 333 4455554 35665 3444 47888888888
Q ss_pred hccCcccCC
Q 009343 466 RNWNMTLPG 474 (537)
Q Consensus 466 RnWNI~IPG 474 (537)
..|...+.+
T Consensus 121 ~~W~~~f~~ 129 (163)
T 1x5b_A 121 VEWSEEFQK 129 (163)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhcC
Confidence 999998764
No 403
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=20.68 E-value=97 Score=25.58 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 436 VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 436 VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+..++..|..+|+.++...|+.+.|.+.|=++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~ 41 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQ 41 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcC
Confidence 45677788889999999999999998887543
No 404
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=20.64 E-value=1.2e+02 Score=26.24 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009343 407 IQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAK 448 (537)
Q Consensus 407 LqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAK 448 (537)
|+.|+.+-++..-++.|+.+++.+=-++|...|-....+.|+
T Consensus 109 i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 109 ICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455565556777899999999888788899888888777764
No 405
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=20.59 E-value=65 Score=32.11 Aligned_cols=64 Identities=14% Similarity=0.285 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh--ccCcc
Q 009343 407 IQELVNQIDPSERLDPD-VEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER--NWNMT 471 (537)
Q Consensus 407 LqELVrqIDP~e~LD~D-VEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER--nWNI~ 471 (537)
+.+|..++|...+|... ..+-....-|+|...|-.|.-.|.|-|......-+|.. .|.. +||+.
T Consensus 196 ~~el~~qLeaa~kLp~~~~~~~e~~~y~~flk~~e~f~~~lrk~k~~g~yS~~dy~-~l~s~Y~~~~~ 262 (264)
T 3rh3_A 196 MAELEKELKAAEKIPAVTGYDEELKNFQSFLSTVKSFMNDMQKARSKGAYSDKEYQ-AMSEAYEYGLS 262 (264)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHH-HHHHHHTTTTC
T ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHhcccc
Confidence 55666666665555211 11445567788999999998888988888888888873 3444 34444
No 406
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=20.53 E-value=95 Score=33.26 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=8.2
Q ss_pred cCCCCcchhhHHHHHh
Q 009343 450 RKSDTLEAKDILVHLE 465 (537)
Q Consensus 450 RKSdTLEvKDVQLhLE 465 (537)
.+...|+..+..-.|.
T Consensus 652 d~dG~Isf~EF~~~l~ 667 (714)
T 3bow_A 652 DDELIIDFDNFVRCLV 667 (714)
T ss_dssp CTTCEECHHHHHHHHH
T ss_pred CCCCeEcHHHHHHHHH
Confidence 3444566666544443
No 407
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=20.51 E-value=63 Score=33.41 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhc------CCCCcchhhHHHHHhh
Q 009343 417 SERLDPDVEDILVDIAE-----DFVESITMFGCSLAKHR------KSDTLEAKDILVHLER 466 (537)
Q Consensus 417 ~e~LD~DVEELLLeIAD-----DFVDsVvs~ACkLAKHR------KSdTLEvKDVQLhLER 466 (537)
...|++++.+.|++..+ .-++.++..+|+.|..+ +.-+|+.+||.-+|.+
T Consensus 280 ~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 280 NLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp GCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred cccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 34678888877776554 12335555555555443 4447889999877754
No 408
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=20.50 E-value=1e+02 Score=23.40 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcc
Q 009343 421 DPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMT 471 (537)
Q Consensus 421 D~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~ 471 (537)
-+++++.|.....+..+. +..++++.-..+...|+..|+...|++ +|..
T Consensus 8 ~~~~~~~l~~~~~~~~~~-l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~ 56 (105)
T 1wlz_A 8 DRDILARLHKAVTSHYHA-ITQEFENFDTMKTNTISREEFRAICNR-RVQI 56 (105)
T ss_dssp CHHHHHHHHHHHHHTHHH-HHHHHHHHCTTCSSCBCHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHHHHHchHHH-HHHHHHHHCCCCCCcCcHHHHHHHHHH-hCCC
Confidence 355666666666555444 344555555566778999999888866 4655
No 409
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=20.36 E-value=1.8e+02 Score=31.29 Aligned_cols=68 Identities=12% Similarity=0.232 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCCCcchhhHHHHHhhccCccc-CCCCc
Q 009343 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHR-----KSDTLEAKDILVHLERNWNMTL-PGFSG 477 (537)
Q Consensus 406 KLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHR-----KSdTLEvKDVQLhLERnWNI~I-PGfss 477 (537)
.+.+++++. ....|+--.=+|.-|||.+.|.+++...+.-+.. ..+.++.+|+ +-|+.-|++. |||..
T Consensus 420 ~~~~~~~~~--~~~~ddy~~i~~~ala~~laEa~aE~~h~~vR~~~wg~~~~e~~~~~~~--~~~~Y~g~R~spGYpa 493 (579)
T 3bul_A 420 EEDALADAF--EAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEEL--IRENYQGIRPAPGYPA 493 (579)
T ss_dssp THHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTCCCCHHHH--HTTCSSCBCCCTTSTT
T ss_pred hHHHHHHHH--HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCHHHH--HhccCCccCCCCCCCC
Confidence 356666665 2223333333446677777777777777665553 2244677775 4455556665 78764
No 410
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=20.31 E-value=1.9e+02 Score=23.18 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCcCCccCCHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 395 DEFGNRILTKRSIQELVNQID--PSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqID--P~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
+.+++..|++..|..+++.+. ....++.+..+.|.+..+.+++.+ ++.+-..+...|+..++.-.+.+
T Consensus 19 D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----f~~~D~d~dG~I~~~Ef~~~~~~ 88 (185)
T 2sas_A 19 DMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDL----KGRADINKDDVVSWEEYLAMWEK 88 (185)
T ss_dssp CTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH----HHHHCTTCSSCEEHHHHHHHHHH
T ss_pred eCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH----HHhcCCCCCCeEcHHHHHHHHHH
No 411
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=20.27 E-value=1.6e+02 Score=25.17 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=23.0
Q ss_pred CCccCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009343 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHR 450 (537)
Q Consensus 398 ~nrILtKrKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHR 450 (537)
+..+.++..|.+++++++ ||. +++...+.++-+++.+....++|+..
T Consensus 101 ~~~~~~~~~l~~~a~~~G----ld~--~~~~~~~~s~~~~~~v~~~~~~a~~~ 147 (195)
T 3hd5_A 101 RKRLFDKKAMGEWAASQG----VDR--AKFDSVFDSFSVQTQVQRASQLAEAA 147 (195)
T ss_dssp CCCCCSHHHHHHHHHHTT----CCH--HHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHhC----CCH--HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 344556666666666542 332 23333334444555555555555443
No 412
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=20.26 E-value=63 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=14.6
Q ss_pred CCcCCccCCHHHHHHHHHhhC
Q 009343 395 DEFGNRILTKRSIQELVNQID 415 (537)
Q Consensus 395 ~e~~nrILtKrKLqELVrqID 415 (537)
+.+++..|++..|..+++.+.
T Consensus 17 D~d~~G~i~~~el~~~l~~~~ 37 (83)
T 1yx7_A 17 DANGDGYVTALELQTFMVTLD 37 (83)
T ss_dssp SSSCSSSCSHHHHHHHHHHHT
T ss_pred CCCCCCcCcHHHHHHHHHHHc
Confidence 345566777777777777765
No 413
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=20.25 E-value=85 Score=25.85 Aligned_cols=32 Identities=6% Similarity=0.109 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhhHHHHHhhc
Q 009343 436 VESITMFGCSLAKHRKSDTLEAKDILVHLERN 467 (537)
Q Consensus 436 VDsVvs~ACkLAKHRKSdTLEvKDVQLhLERn 467 (537)
+..|+..|.++|+..+.+.|...+|.+.|=++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 45688899999999999999999999988654
No 414
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=20.13 E-value=1.3e+02 Score=24.57 Aligned_cols=25 Identities=0% Similarity=-0.027 Sum_probs=15.0
Q ss_pred HHHHhhhhcCCCCcchhhHHHHHhh
Q 009343 442 FGCSLAKHRKSDTLEAKDILVHLER 466 (537)
Q Consensus 442 ~ACkLAKHRKSdTLEvKDVQLhLER 466 (537)
.+.++.-.-+...|+..++.-.|..
T Consensus 113 ~~F~~~D~d~~G~Is~~El~~~l~~ 137 (191)
T 1uhk_A 113 ALFDIVDKDQNGAITLDEWKAYTKA 137 (191)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 4444444455666777777666654
No 415
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=20.09 E-value=1.4e+02 Score=29.41 Aligned_cols=71 Identities=10% Similarity=0.031 Sum_probs=49.9
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhHHHHHhhccCcccCCCCcc
Q 009343 405 RSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDILVHLERNWNMTLPGFSGD 478 (537)
Q Consensus 405 rKLqELVrqIDP~e~LD~DVEELLLeIADDFVDsVvs~ACkLAKHRKSdTLEvKDVQLhLERnWNI~IPGfssD 478 (537)
..+++|+++. + +..++|.++.+.+|.++-|+.-+.+++.+-. ++---|..+||.-+++-+.|.++=.+|-+
T Consensus 229 ~l~~~l~~e~-~-~~~~~e~~~~v~~l~~eav~~E~~~~~~~~~-~~~~Gl~~~~~~~yi~y~an~~L~~lG~~ 299 (346)
T 2rcc_A 229 NIFKELLVEF-P-ELNTEETKTFVKTTLMKAADLEKDWFRYIIG-DKIPGINPEDMETYISFIANKRAVQLGME 299 (346)
T ss_dssp HHHHHHHHHC-G-GGCSHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSTTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcC-C-hhccHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455566542 2 4468888999999999999988888877764 23445677899888887777665444443
No 416
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=20.09 E-value=1.4e+02 Score=29.32 Aligned_cols=13 Identities=8% Similarity=0.228 Sum_probs=6.2
Q ss_pred CcCCccCCHHHHH
Q 009343 396 EFGNRILTKRSIQ 408 (537)
Q Consensus 396 e~~nrILtKrKLq 408 (537)
.+++..|++..|.
T Consensus 342 ~d~dG~I~~~El~ 354 (486)
T 3mwu_A 342 TNNDGMLDRDELV 354 (486)
T ss_dssp TTCSSSBCHHHHH
T ss_pred CCCCceeeHHHHH
Confidence 3444455555553
Done!