BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009344
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 135/269 (50%), Gaps = 15/269 (5%)
Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
+T LH AARAG+ + K +L + K + +T L+ AA GH ++V +++
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKA------KDDQTPLHCAARIGHTNMVKLLLE 101
Query: 83 CYDLADAGIKARNGFDAFHIAAKEGHLE-VLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
+ A+ + G HIAA+EGH+E VL +L + MT T LH AA G
Sbjct: 102 --NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYG 157
Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
V V L+E ++ + NG T LH A + L+++K LL G T
Sbjct: 158 KVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTP 215
Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNG 261
LH+A K +EV + L++ S N +G +PLH+A ++G ++V LLL+ + N N
Sbjct: 216 LHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNL 273
Query: 262 VNRTGETALDTAEKTGHSNLAALLREHGV 290
N++G T L + GH +A +L +HGV
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 143/284 (50%), Gaps = 27/284 (9%)
Query: 10 KKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQN-------QSGE 62
+K+ ++ K+ T LH AA+ G + ++ ELL +++ ++G
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYG-------------KVRVAELLLERDAHPNAAGKNGL 180
Query: 63 TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL 122
T L+VA + ++D+V ++ + A NG+ HIAAK+ +EV + LL Y
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHS--PAWNGYTPLHIAAKQNQVEVARSLLQ-YGGS 237
Query: 123 AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
A + T LH AA +GH E++ L+ +++ + +G T LH A+ G + V
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK 242
L+ V+ T + G T LH+A NI++V+ L++ + A VN G SPLH A ++
Sbjct: 297 LIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQ 354
Query: 243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
G IV LLL N + N V+ G T L A++ G+ ++ +L+
Sbjct: 355 GHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 48/304 (15%)
Query: 20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
K D T LH AAR G+ + VK +L L +G T L++AA GHV+ V
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLA------TTAGHTPLHIAAREGHVETVLA 131
Query: 80 MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTA 137
+++ A + GF H+AAK G + V ++LL +P A L T LH A
Sbjct: 132 LLE--KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL---TPLHVA 186
Query: 138 AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA------ADSVIA 191
+++++ L+ S + + NG T LH AA+ ++EV ++LL A+SV
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Query: 192 IRT--------------------------DKKGQTALHMAVKGQNIEVVQELIKAEPASV 225
+ +K G T LH+ + ++ V LIK V
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMV 304
Query: 226 NMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL 285
+ G +PLH+A+ G ++V+ LL + + ++N + G + L A + GH+++ LL
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 286 REHG 289
++G
Sbjct: 364 LKNG 367
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
T LH A+ GH+ ++ L++ +S +S +T LH AAR G EV K LL + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
+ K QT LH A + + +V+ L++ A+ N+ T G++PLHIA R+G + V L
Sbjct: 75 AKA-KDDQTPLHCAARIGHTNMVKLLLENN-ANPNLATTAGHTPLHIAAREGHVETV-LA 131
Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
L E + + + G T L A K G +A LL E
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
T LH AA GH+EV+ L+EA + + NG+T LH AARNG LEV+K LL A + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
+ DK G+T LH+A + ++EVV+ L++A A VN D G +PLH+A R G ++V+LL
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 252 L 252
L
Sbjct: 121 L 121
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154
NG H+AA+ GHLEV+K+LL ++ D T LH AA GH+EV+ L+EA +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 155 SLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVV 214
+ NG+T LH AARNG LEV+K LL A + + + DK G+T LH+A + ++EVV
Sbjct: 60 D-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117
Query: 215 QELIKA 220
+ L++A
Sbjct: 118 KLLLEA 123
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 3/127 (2%)
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
NG+T LH AARNG LEV+K LL A + + + DK G+T LH+A + ++EVV+ L++A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
A VN D G +PLH+A R G ++V+LLL + ++N ++ G T L A + GH +
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 283 ALLREHG 289
LL E G
Sbjct: 118 KLLLEAG 124
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 78/129 (60%), Gaps = 4/129 (3%)
Query: 60 SGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVY 119
+G T L++AA GH+++V +++ AD K +NG H+AA+ GHLEV+K+LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 120 PELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179
++ D T LH AA GH+EV+ L+EA + + NG+T LH AARNG LEV
Sbjct: 59 ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEV 116
Query: 180 LKTLLAADS 188
+K LL A +
Sbjct: 117 VKLLLEAGA 125
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AAR G+L+ VK +L + K+ ++G T L++AA GH+++V +++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD------KNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
AD K +NG H+AA+ GHLEV+K+LL ++ D T LH AA GH+
Sbjct: 58 G--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHL 114
Query: 144 EVLNFLIEA 152
EV+ L+EA
Sbjct: 115 EVVKLLLEA 123
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+T LH+A + ++EVV+ L++A A VN D G +PLH+A R G ++V+LLL +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGA 59
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQN 300
++N ++ G T L A + GH + LL E G + N K +N
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKN 100
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
Query: 20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
K T LH AAR G+L+ VK +L + K+ ++G T L++AA GH+++V
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD------KNGRTPLHLAARNGHLEVVKL 86
Query: 80 MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
+++ AD K +NG H+AA+ GHLEV+K+LL
Sbjct: 87 LLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
AA G + + L+ A + + +G T LH AAR G LE+++ LL A + + + DK
Sbjct: 9 AARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
G T LH+A + ++E+V+ L+KA A VN D G +PLH+A R+G +IV +LL +
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAG 124
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
++N ++ G+T D A + GH ++A +L++
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD K ++G+ H+AA+EGHLE+++VLL ++ D T LH AA +GH+E++
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIV 84
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++A + + +G T LH AAR G LE+++ LL A + + + DK G+T +A+
Sbjct: 85 EVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ-DKFGKTPFDLAI 142
Query: 207 KGQNIEVVQELIKA 220
+ + ++ + L KA
Sbjct: 143 REGHEDIAEVLQKA 156
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + K ++ G T L++AA GH+++V ++K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK------DKDGYTPLHLAAREGHLEIVEVLLKAG- 58
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
AD K ++G+ H+AA+EGHLE+++VLL ++ D T LH AA +GH+E+
Sbjct: 59 -ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEI 116
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
+ L++A + + GKT A R G ++ + L
Sbjct: 117 VEVLLKAGAD-VNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AAR G+L+ V+ +L + K ++ G T L++AA GH+++V ++K
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAK------DKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
AD K ++G+ H+AA+EGHLE+++VLL ++ D T A +GH
Sbjct: 91 G--ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ-DKFGKTPFDLAIREGHE 147
Query: 144 EVLNFLIEA 152
++ L +A
Sbjct: 148 DIAEVLQKA 156
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G +PLH+A R+G +IV +LL +
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGA 59
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNP 302
++N ++ G T L A + GH + +L + G + K P
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 104
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 14/221 (6%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIK----ARNGFDAFHIAAKEGHLEVL 112
++Q+ + L+ AAE GHVD+ C+ L AG + + AA+ HLE +
Sbjct: 7 EHQNKRSPLHAAAEAGHVDI------CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 113 KVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA 172
K L+ L D +T LH AA +GH EV+ +L+ + G T + A
Sbjct: 61 KYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKG 232
++++K LL+ S I IR D + LH A +++ + L+ A+ ++ V+ G
Sbjct: 120 EYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHG 177
Query: 233 NSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
+SPLHIA R+ R V L L+ ++++ N+ GET L A
Sbjct: 178 DSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCA 217
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
+ N ++ LH+AA G +++ L+ A + I ++ + +T L A + ++E V+ LI
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLI 64
Query: 219 KAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH 278
KA A V+ D +G++ LH+A +KG ++V+ LL+N + ++N + G T + A + H
Sbjct: 65 KA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 279 SNLAALLREHGVE 291
+L LL G +
Sbjct: 124 VDLVKLLLSKGSD 136
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 10/197 (5%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T L AA +L+ VK ++ K L+ ++ G T L++AA+ GH ++V ++
Sbjct: 46 TPLMEAAENNHLEAVKYLI------KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
+ D + G+ A + H++++K+LL+ ++ + D LH AA G V
Sbjct: 100 GQM-DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCV 157
Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
++ L+ A+ L ++ +G + LH AAR R + + L+ DS + ++ +K+G+T L
Sbjct: 158 DIAEILLAAKCDLHAVN-IHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQ 215
Query: 204 MAVKGQNIEVVQELIKA 220
A + ++ KA
Sbjct: 216 CASLNSQVWSALQMSKA 232
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
AA G + + L+ A + + +G T LH AAR G LE+++ LL A + + + DK
Sbjct: 21 AARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 78
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
G T LH+A + ++E+V+ L+KA A VN D G +PLH+A R+G +IV +LL +
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAG 136
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLR 286
++N ++ G+TA D + G+ +LA +L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD K ++G+ H+AA+EGHLE+++VLL ++ D T LH AA +GH+E++
Sbjct: 38 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++A + + +G T LH AAR G LE+++ LL A + + + DK G+TA +++
Sbjct: 97 EVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQNIEVVQ 215
N ++ +
Sbjct: 155 DNGNEDLAE 163
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 10/158 (6%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + K ++ G T L++AA GH+++V ++K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAK------DKDGYTPLHLAAREGHLEIVEVLLKAG- 70
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
AD K ++G+ H+AA+EGHLE+++VLL ++ D T LH AA +GH+E+
Sbjct: 71 -ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEI 128
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
+ L++A + + GKTA + NG ++ + L
Sbjct: 129 VEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AAR G+L+ V+ +L + K ++ G T L++AA GH+++V ++K
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAK------DKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD K ++G+ H+AA+EGHLE+++VLL
Sbjct: 103 G--ADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G +PLH+A R+G +IV +LL +
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGA 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNP 302
++N ++ G T L A + GH + +L + G + K P
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 116
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
AA G + + L+ A + + +G T LH AAR G LE+++ LL A + + + DK
Sbjct: 9 AARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
G T LH+A + ++E+V+ L+KA A VN D G +PLH+A R+G +IV +LL +
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAG 124
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
++N ++ G+T D A G+ ++A +L++
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD K ++G+ H+AA+EGHLE+++VLL ++ D T LH AA +GH+E++
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIV 84
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++A + + +G T LH AAR G LE+++ LL A + + + DK G+T +A+
Sbjct: 85 EVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ-DKFGKTPFDLAI 142
Query: 207 KGQNIEVVQELIKA 220
N ++ + L KA
Sbjct: 143 DNGNEDIAEVLQKA 156
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + K ++ G T L++AA GH+++V ++K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK------DKDGYTPLHLAAREGHLEIVEVLLKAG- 58
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
AD K ++G+ H+AA+EGHLE+++VLL ++ D T LH AA +GH+E+
Sbjct: 59 -ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEI 116
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
+ L++A + + GKT A NG ++ + L
Sbjct: 117 VEVLLKAGAD-VNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AAR G+L+ V+ +L + K ++ G T L++AA GH+++V ++K
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAK------DKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD K ++G+ H+AA+EGHLE+++VLL
Sbjct: 91 G--ADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G +PLH+A R+G +IV +LL +
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGA 59
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N ++ G T L A + GH + +L + G +
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G+ + +K L+ ++ + D T LH AA GH EV+ LI ++ + + S
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDS 68
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
+G+T LH AA NG EV+K L++ + + + D G+T LH A + + EVV+ LI ++
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLI-SKG 126
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
A VN D+ G +PL +A G E++V+LL
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
GKR L AA GN D VKD++ + + + G T L+ AAE GH ++V
Sbjct: 5 GKR----LIEAAENGNKDRVKDLIENGAD------VNASDSDGRTPLHHAAENGHKEVVK 54
Query: 79 EMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138
+I AD K +G H AA+ GH EV+K+L++ ++ D T LH AA
Sbjct: 55 LLISKG--ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAA 111
Query: 139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
GH EV+ LI ++ + + S S+G+T L A +G EV+K L
Sbjct: 112 ENGHKEVVKLLI-SKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AA NG + +K L+ + + +D G+T LH A + + EVV+ LI ++ A VN D+
Sbjct: 11 AAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDS 68
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G +PLH A G +++V+LL++ ++N + G T L A + GH + LL G
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 291 E 291
+
Sbjct: 128 D 128
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G+ + +K L+ ++ + D T LH AA +GH E++ LI ++ + + S
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDS 68
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
+G+T LH AA+ G E++K L++ + + + D G+T LH A K + E+V+ LI ++
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLI-SKG 126
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
A VN D+ G +PL +A G E+IV+LL
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
GKR L AA GN D VKD++ + + + G T L+ AA+ GH ++V
Sbjct: 5 GKR----LIEAAENGNKDRVKDLIENGAD------VNASDSDGRTPLHYAAKEGHKEIVK 54
Query: 79 EMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138
+I AD K +G H AAKEGH E++K+L++ ++ D T LH AA
Sbjct: 55 LLISKG--ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAA 111
Query: 139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
+GH E++ LI ++ + + S S+G+T L A +G E++K L
Sbjct: 112 KEGHKEIVKLLI-SKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AA NG + +K L+ + + +D G+T LH A K + E+V+ LI ++ A VN D+
Sbjct: 11 AAENGNKDRVKDLIENGADVNA-SDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDS 68
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G +PLH A ++G ++IV+LL++ ++N + G T L A K GH + LL G
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 291 E 291
+
Sbjct: 128 D 128
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
AA G+ + + L+E + + S S+GKT LH AA NG EV+K LL+ + + D
Sbjct: 11 AAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DS 68
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
G+T LH+A + + EVV+ L+ ++ A N D+ G +PLH+A G +++V+LLL+
Sbjct: 69 DGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG- 126
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
+ N + G T LD A + G+ + LL + G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
GKR L AA GN D VKD+L + + G+T L++AAE GH ++V
Sbjct: 5 GKR----LIEAAENGNKDRVKDLLENGADVNA------SDSDGKTPLHLAAENGHKEVVK 54
Query: 79 EMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138
++ AD K +G H+AA+ GH EV+K+LL+ + D T LH AA
Sbjct: 55 LLLSQG--ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAA 111
Query: 139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
GH EV+ L+ ++ + S S+G+T L A +G EV+K L
Sbjct: 112 ENGHKEVVKLLL-SQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AA NG + +K LL + + +D G+T LH+A + + EVV+ L+ ++ A N D+
Sbjct: 11 AAENGNKDRVKDLLENGADVNA-SDSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDS 68
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G +PLH+A G +++V+LLL+ + N + G+T L A + GH + LL G
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 291 E 291
+
Sbjct: 128 D 128
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
NG+T LH AARNG LEV+K LL A + + + DK G+T LH+A + ++EVV+ L++A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
A VN D G +PLH+A R G ++V+LLL
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154
NG H+AA+ GHLEV+K+LL ++ D T LH AA GH+EV+ L+EA +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 155 SLITISRSNGKTALHSAARNGRLEVLKTLLAADS 188
+ NG+T LH AARNG LEV+K LL A +
Sbjct: 60 D-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
T LH AA GH+EV+ L+EA + + NG+T LH AARNG LEV+K LL A + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKA 220
+ DK G+T LH+A + ++EVV+ L++A
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 60 SGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVY 119
+G T L++AA GH+++V +++ AD K +NG H+AA+ GHLEV+K+LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 120 PELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152
++ D T LH AA GH+EV+ L+EA
Sbjct: 59 ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+T LH+A + ++EVV+ L++A A VN D G +PLH+A R G ++V+LLL +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGA 59
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
++N ++ G T L A + GH + LL E G
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AAR G+L+ VK +L + K+ ++G T L++AA GH+++V +++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD------KNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD K +NG H+AA+ GHLEV+K+LL
Sbjct: 58 G--ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
G +PLH+A R G ++V+LLL + ++N ++ G T L A + GH + LL E G +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 292 SAKNMKPQN 300
N K +N
Sbjct: 61 V--NAKDKN 67
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
K T LH AAR G+L+ VK +L + K+ ++G T L++AA GH+++V
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD------KNGRTPLHLAARNGHLEVVKL 86
Query: 80 MIKC 83
+++
Sbjct: 87 LLEA 90
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
AA G+ + + L+E + S S+G+T LH AA NG E++K LL+ + + D
Sbjct: 11 AAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DS 68
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
G+T LH A + + E+V+ L+ ++ A N D+ G +PLH A G ++IV+LLL+
Sbjct: 69 DGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG- 126
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
+ N + G T LD A + G+ + LL + G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 14/165 (8%)
Query: 19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
GKR L AA GN D VKD+L + + G T L+ AAE GH ++V
Sbjct: 5 GKR----LIEAAENGNKDRVKDLLENGADPNA------SDSDGRTPLHYAAENGHKEIVK 54
Query: 79 EMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138
++ AD K +G H AA+ GH E++K+LL+ + D T LH AA
Sbjct: 55 LLLSKG--ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAA 111
Query: 139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
GH E++ L+ ++ + S S+G+T L A +G E++K L
Sbjct: 112 ENGHKEIVKLLL-SKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AA NG + +K LL + +D G+T LH A + + E+V+ L+ ++ A N D+
Sbjct: 11 AAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDS 68
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G +PLH A G ++IV+LLL+ + N + G T L A + GH + LL G
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 291 E 291
+
Sbjct: 128 D 128
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 137/300 (45%), Gaps = 34/300 (11%)
Query: 17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
LTG+ L AAR+GN +++ +LT L + T L++AA Y V +
Sbjct: 19 LTGEYKKDELLEAARSGNEEKLMALLT-----PLNVNCHASDGRKSTPLHLAAGYNRVRI 73
Query: 77 VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT 136
V +++ AD K + G H A GH EV ++LL + +DL T LH
Sbjct: 74 VQLLLQ--HGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDLWQFTPLHE 130
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTAL------------------HS---AARNG 175
AA + VEV + L+ + + T+ +GK+A+ HS AAR
Sbjct: 131 AASKNRVEVCSLLL-SHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA 189
Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQ--ELIKAEPASVNMVDTKGN 233
L +K LA + +I + + +TALH AV + + Q EL+ + A+VN +
Sbjct: 190 DLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM 248
Query: 234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA 293
+PLH+A + ++ +L + +N ++ G+TAL A GH LL +G + +
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 9 PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVA 68
P ++ ++LT + +L AAR +L +VK L L+ + KQ QS ETAL+ A
Sbjct: 165 PTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA------LEIINFKQPQSHETALHCA 218
Query: 69 AEYGHVDL--VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV 126
H VAE++ A+ K ++ H+AA+ H +V++VL ++ +
Sbjct: 219 VASLHPKRKQVAELL-LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN-AL 276
Query: 127 DLTNTTALHTAAMQGHVEVLNFLIE--AESSLITI 159
D TALH AA+ GH++ L+ ++ S+I++
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 184 LAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG 243
LA S A+ T + + L A + N E + L+ + + D + ++PLH+A
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69
Query: 244 REQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
R +IV+LLL + +++ ++ G L A GH + LL +HG
Sbjct: 70 RVRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
T LH AA + H +V+ L + + + + S G+TALH AA G L+ + LL+ S +
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALD-SLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
I +G TA M N V Q L ++ P + VD +
Sbjct: 308 I-ISLQGFTAAQMG----NEAVQQILSESTPMRTSDVDYR 342
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 82/138 (59%), Gaps = 3/138 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
++ A + + + ++G T LH AA NG LE+++ LL + + +D G T LH+A
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN-ASDLTGITPLHLAAAT 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
++E+V+ L+K A VN D G++PLH+A + G +IV +LL + ++N ++ G+T
Sbjct: 91 GHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLR 286
A D + G+ +LA +L+
Sbjct: 149 AFDISIDNGNEDLAEILQ 166
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD +G+ H+AA GHLE+++VLL ++ + DLT T LH AA GH+E++
Sbjct: 38 ADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++ + + ++G T LH AA+ G LE+++ LL + + + DK G+TA +++
Sbjct: 97 EVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQNIEVVQ 215
N ++ +
Sbjct: 155 DNGNEDLAE 163
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AAR G+ + ++ L+A + + TD G T LH+A ++E+V+ L+K A VN D
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDL 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G +PLH+A G +IV +LL + ++N + G T L A K GH + +L +HG
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 291 E 291
+
Sbjct: 138 D 138
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G +PLH+A G +IV +LL N
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N + TG T L A TGH + +L +HG +
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA G+L+ V+ +L K + + G T L++AA+YGH+++V ++K
Sbjct: 82 TPLHLAAATGHLEIVEVLL------KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
AD + + G AF I+ G+ ++ ++L
Sbjct: 136 G--ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 25/308 (8%)
Query: 1 MEEAPGGQPKKKMTKQLTGKR----DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK 56
ME P++ T +G+R D+ L A + ++D V+ +L G +E
Sbjct: 1 MESRDHNNPQEGPTSS-SGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE---- 55
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
+ G T L+ A + D+V +++ AD ++ +NG F +AA G +++LK+ L
Sbjct: 56 -EEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFILAAIAGSVKLLKLFL 112
Query: 117 AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITIS---------RSNGKTA 167
+ ++ D TA AA+ G V+ L FL + +++ R G TA
Sbjct: 113 SKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV---KGQNIEVVQELIKAEPAS 224
L AA G +EVLK LL D G+ AL A+ ++E + L+ A
Sbjct: 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 231
Query: 225 VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAAL 284
VN+ +G +PL +A K +V+ LL +N + G+TAL A + +A L
Sbjct: 232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 291
Query: 285 LREHGVES 292
L + G +
Sbjct: 292 LCKRGAST 299
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
A +G+LE LK + AD +A RTD+ +TALH A + E+V+ L++ VN D
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
G SPLHIA GR++IV+ LL +N VN+ G T L A +A +L E G
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)
Query: 30 ARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK----CYD 85
A +G L+E+K+ + K L + +Q TAL+ A GH ++V +++ D
Sbjct: 14 AYSGKLEELKESILAD-----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
DA G+ HIAA G E++K LL ++ V+ T LH AA + E+
Sbjct: 69 KDDA------GWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEI 121
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA 205
L+E ++ TA+H AA G L+++ LL + I+ D +G T LH+A
Sbjct: 122 AVMLLEGGANPDAKDHYEA-TAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLA 179
Query: 206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239
+ +E + L+ ++ AS+ + + + +PL +A
Sbjct: 180 CDEERVEEAKLLV-SQGASIYIENKEEKTPLQVA 212
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 34/182 (18%)
Query: 104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSN 163
A G LE LK + LA D + TALH A GH E++ FL++ +
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK--AE 221
G + LH AA GR E++K LL + + ++ G T LH A E+ L++ A
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 222 P------------------------------ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
P AS N+ DT+GN+PLH+A + R + +LL
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Query: 252 LA 253
++
Sbjct: 192 VS 193
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
A +G+LE LK + AD +A RTD+ +TALH A + E+V+ L++ VN D
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 73
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
G SPLHIA GR++IV+ LL +N VN+ G T L A +A +L E G
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)
Query: 30 ARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK----CYD 85
A +G L+E+K+ + K L + +Q TAL+ A GH ++V +++ D
Sbjct: 15 AYSGKLEELKESILAD-----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 69
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
DA G+ HIAA G E++K LL ++ V+ T LH AA + E+
Sbjct: 70 KDDA------GWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEI 122
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA 205
L+E ++ TA+H AA G L+++ LL + I+ D +G T LH+A
Sbjct: 123 AVMLLEGGANPDAKDHYEA-TAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLA 180
Query: 206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239
+ +E + L+ ++ AS+ + + + +PL +A
Sbjct: 181 CDEERVEEAKLLV-SQGASIYIENKEEKTPLQVA 213
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 34/182 (18%)
Query: 104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSN 163
A G LE LK + LA D + TALH A GH E++ FL++ +
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 73
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK--AE 221
G + LH AA GR E++K LL + + ++ G T LH A E+ L++ A
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 222 P------------------------------ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
P AS N+ DT+GN+PLH+A + R + +LL
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Query: 252 LA 253
++
Sbjct: 193 VS 194
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSVIAIRTDKKGQTALHMAV 206
++ A + + +GKT LH AA G LE+++ LL AD A DK G T LH+A
Sbjct: 32 ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA---DKMGDTPLHLAA 88
Query: 207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTG 266
++E+V+ L+K A VN DT G +PLH+A G +IV +LL ++N ++ G
Sbjct: 89 LYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG-ADVNAQDKFG 146
Query: 267 ETALDTAEKTGHSNLAALLRE 287
+TA D + G+ +LA +L++
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + ++ SG+T L++AA GH+++V ++K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN------AEDDSGKTPLHLAAIKGHLEIVEVLLKHG- 70
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
AD + G H+AA GHLE+++VLL ++ T D T LH AA GH+E+
Sbjct: 71 -ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT-DTYGFTPLHLAADAGHLEI 128
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
+ L++ + + GKTA + NG ++ + L
Sbjct: 129 VEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD + +G H+AA +GHLE+++VLL ++ D T LH AA+ GH+E++
Sbjct: 38 ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++ + + + + G T LH AA G LE+++ LL + + + DK G+TA +++
Sbjct: 97 EVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQN---IEVVQEL 217
N E++Q+L
Sbjct: 155 DNGNEDLAEILQKL 168
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G +PLH+A KG +IV +LL +
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N ++ G+T L A GH + +L ++G +
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGAD 105
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA G+L+ V+ +L + ++ G+T L++AA YGH+++V ++K
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHGADVN------AADKMGDTPLHLAALYGHLEIVEVLLK- 101
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
+ AD GF H+AA GHLE+++VLL
Sbjct: 102 -NGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
K DT LH AA G+L+ V+ +L + + G T L++AA+ GH+++V
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVN------ATDTYGFTPLHLAADAGHLEIVEV 131
Query: 80 MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
++K AD + + G AF I+ G+ ++ ++L
Sbjct: 132 LLKYG--ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 164 GKTALHSAARNGRLEVLKTLL--AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
G T LH NG LE+++ LL AAD +DK G T LH+A ++E+V+ L+K
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD---VNASDKSGWTPLHLAAYRGHLEIVEVLLKY- 102
Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
A VN +D +G +PLH+A G +IV +LL ++N ++ G+TA D + G+ +L
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 282 AALLRE 287
A +L++
Sbjct: 162 AEILQK 167
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 6/134 (4%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD G H+ GHLE+++VLL ++ + D + T LH AA +GH+E++
Sbjct: 38 ADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++ + + + G T LH AA +G LE+++ LL + + + DK G+TA +++
Sbjct: 97 EVLLKYGADVNAMDYQ-GYTPLHLAAEDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQN---IEVVQEL 217
N E++Q+L
Sbjct: 155 DNGNEDLAEILQKL 168
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + + D G T LH+ V ++E+++ L+K A VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKY-AADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
D G +PLH+A +G +IV +LL ++N ++ G T L A + GH + +L +
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 288 HGVE 291
+G +
Sbjct: 135 YGAD 138
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH G+L+ ++ +L K + ++SG T L++AA GH+++V ++K
Sbjct: 49 TPLHLVVNNGHLEIIEVLL------KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD G+ H+AA++GHLE+++VLL
Sbjct: 103 G--ADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA G+L+ V+ +L K + + G T L++AAE GH+++V ++K
Sbjct: 82 TPLHLAAYRGHLEIVEVLL------KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
AD + + G AF I+ G+ ++ ++L
Sbjct: 136 G--ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
A +G+L+ LK + AD +A RTD+ +TALH A + E+V+ L++ VN D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
G SPLHIA GR++IV+ LL ++N VN+ G T L A +A +L E G
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 30 ARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK----CYD 85
A +G LDE+K+ + K L + +Q TAL+ A GH ++V +++ D
Sbjct: 14 AYSGKLDELKERILAD-----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
DA G+ HIAA G E++K LL V V+ T LH AA + E+
Sbjct: 69 KDDA------GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA 205
L+E ++ + TA+H AA G L+++ LL + I+ D +G T LH+A
Sbjct: 122 AVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLA 179
Query: 206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNL 259
+ +E + L+ + AS+ + + + +PL +A + G I++ L E ++
Sbjct: 180 CDEERVEEAKFLV-TQGASIYIENKEEKTPLQVA-KGGLGLILKRLAEGEEASM 231
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
++ A + + + + G T LH AA +G LE+++ LL + + +D G T LH+A
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYW 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
++E+V+ L+K A VN +D+ G +PLH+A + G +IV +LL + ++N ++ G+T
Sbjct: 91 GHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLRE 287
A D + G+ +LA +L++
Sbjct: 149 AFDISIDNGNEDLAEILQK 167
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L+A ++ D T TT LH AA GH+E++ L++ + + S
Sbjct: 21 AARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLK-HGADVDASDV 78
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
G T LH AA G LE+++ LL + + D G T LH+A K +E+V+ L+K
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLK-HG 136
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
A VN D G + I+ G E + +L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD G H+AA GHLE+++VLL ++ + D+ T LH AA GH+E++
Sbjct: 38 ADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++ + + S+G T LH AA+ G LE+++ LL + + + DK G+TA +++
Sbjct: 97 EVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQN---IEVVQEL 217
N E++Q+L
Sbjct: 155 DNGNEDLAEILQKL 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G +PLH+A G +IV +LL +
Sbjct: 15 GRKLLEAARAGQDDEV--RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE----SAKNMKP 298
+++ + G T L A GH + +L ++G + + M P
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTP 116
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 20/283 (7%)
Query: 22 DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
D+ L A + ++D V+ +L G +E + G T L+ A + D+V ++
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIVELLL 59
Query: 82 KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
+ AD ++ +NG F +AA G +++LK+ L+ ++ D TA AA+ G
Sbjct: 60 RHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYG 116
Query: 142 HVEVLNFLIEAESSLITIS---------RSNGKTALHSAARNGRLEVLKTLLAADSVIAI 192
V+ L FL + +++ R G TAL AA G +EVLK LL
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 193 RTDKKGQTALHMAV---KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
D G+ AL A+ ++E + L+ A VN+ +G +PL +A K +V+
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236
Query: 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292
LL +N + G+TAL A + +A LL + G +
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
AA G + + L+ A + + + G T LH AAR G LE+++ LL + + D
Sbjct: 21 AARAGQDDEVRILM-ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN-ALDF 78
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
G T LH+A K ++E+V+ L+K A VN DT G++PLH+A G +IV +LL
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG- 136
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLR 286
++N ++ G+TA D + G+ +LA +L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + ++ G+T L++AA GH+++V ++K +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN------AEDTYGDTPLHLAARVGHLEIVEVLLK--N 69
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
AD +G H+AAK GHLE+++VLL Y D +T LH AA GH+E+
Sbjct: 70 GADVNALDFSGSTPLHLAAKRGHLEIVEVLLK-YGADVNADDTIGSTPLHLAADTGHLEI 128
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
+ L++ + + GKTA + NG ++ + L
Sbjct: 129 VEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + + D G T LH+A + ++E+V+ L+K A VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLK-NGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
+D G++PLH+A ++G +IV +LL ++N + G T L A TGH + +L +
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYG-ADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 288 HGVE 291
+G +
Sbjct: 135 YGAD 138
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN DT G++PLH+A R G +IV +LL N
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N ++ +G T L A K GH + +L ++G +
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
DT LH AAR G+L+ V+ +L + + SG T L++AA+ GH+++V ++K
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVNALDF------SGSTPLHLAAKRGHLEIVEVLLK 101
Query: 83 CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD G H+AA GHLE+++VLL
Sbjct: 102 YG--ADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 7/141 (4%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSVIAIRTDKKGQTALHMAV 206
++ A + + + ++G T LH AA G LE+++ LL AD V AI D G T LH+A
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAI--DIXGSTPLHLAA 88
Query: 207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTG 266
++E+V+ L+K A VN VDT G++PLH+A G +IV +LL + ++N ++ G
Sbjct: 89 LIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG-ADVNAQDKFG 146
Query: 267 ETALDTAEKTGHSNLAALLRE 287
+TA D + G+ +LA +L++
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AAR G+ + ++ L+A + + TD G T LH+A ++E+V+ L+K A VN +D
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDI 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G++PLH+A G +IV +LL + ++N V+ G+T L A GH + +L +HG
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 291 E 291
+
Sbjct: 138 D 138
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 29 AARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD 88
AARAG DEV+ ++ + + SG T L++AA YGH+++V ++K AD
Sbjct: 21 AARAGQDDEVRILMANGADVN------ATDASGLTPLHLAATYGHLEIVEVLLKHG--AD 72
Query: 89 AGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNF 148
G H+AA GHLE+++VLL ++ VD T LH AA+ GH+E++
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
L++ + + GKTA + NG ++ + L
Sbjct: 132 LLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD +G H+AA GHLE+++VLL ++ +D+ +T LH AA+ GH+E++
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++ + + + + G T LH AA G LE+++ LL + + + DK G+TA +++
Sbjct: 97 EVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQN---IEVVQEL 217
N E++Q+L
Sbjct: 155 DNGNEDLAEILQKL 168
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
++ A + + + NG T LH AA NG+LE+++ LL + + +D G T LH+A
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASDSAGITPLHLAAYD 82
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
++E+V+ L+K A VN D G +PLH+A G+ +IV +LL + ++N + G T
Sbjct: 83 GHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG-ADVNAQDALGLT 140
Query: 269 ALDTAEKTGHSNLAALLR 286
A D + G +LA +L+
Sbjct: 141 AFDISINQGQEDLAEILQ 158
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
GK L +AA EV +L A+ TD G T LH+A +E+V+ L+K A
Sbjct: 7 GKKLLEAAAAGQDDEV--RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK-NGA 63
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA 283
VN D+ G +PLH+A G +IV +LL + ++N +R G T L A +G +
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLKHG-ADVNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 284 LLREHGVE 291
+L +HG +
Sbjct: 123 VLLKHGAD 130
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AA AG DEV+ ++ + + +G T L++AA G +++V ++K +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVN------ATDDNGLTPLHLAAANGQLEIVEVLLK--N 61
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
AD G H+AA +GHLE+++VLL ++ D T LH AA+ G +E+
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEI 120
Query: 146 LNFLIE 151
+ L++
Sbjct: 121 VEVLLK 126
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 7/141 (4%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSVIAIRTDKKGQTALHMAV 206
++ A + + + ++G T LH AA G LE+++ LL AD V AI D G T LH+A
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAI--DIMGSTPLHLAA 88
Query: 207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTG 266
++E+V+ L+K A VN VDT G++PLH+A G +IV +LL + ++N ++ G
Sbjct: 89 LIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG-ADVNAQDKFG 146
Query: 267 ETALDTAEKTGHSNLAALLRE 287
+TA D + G+ +LA +L++
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AAR G+ + ++ L+A + + TD G T LH+A ++E+V+ L+K A VN +D
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDI 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G++PLH+A G +IV +LL + ++N V+ G+T L A GH + +L +HG
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 291 E 291
+
Sbjct: 138 D 138
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 29 AARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD 88
AARAG DEV+ ++ + + SG T L++AA YGH+++V ++K AD
Sbjct: 21 AARAGQDDEVRILMANGADVN------ATDASGLTPLHLAATYGHLEIVEVLLKHG--AD 72
Query: 89 AGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNF 148
G H+AA GHLE+++VLL ++ VD T LH AA+ GH+E++
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
L++ + + GKTA + NG ++ + L
Sbjct: 132 LLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD +G H+AA GHLE+++VLL ++ +D+ +T LH AA+ GH+E++
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++ + + + + G T LH AA G LE+++ LL + + + DK G+TA +++
Sbjct: 97 EVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQN---IEVVQEL 217
N E++Q+L
Sbjct: 155 DNGNEDLAEILQKL 168
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
G T LH AA+ G LE+++ LL + + D G T LH+A ++E+V+ L+K A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLK-HGA 104
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA 283
VN D +G +PLH+A G +IV +LL ++N ++ G+TA D + G+ +LA
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 284 LLRE 287
+L++
Sbjct: 164 ILQK 167
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
G H+AAK GHLE+++VLL Y D T LH AA GH+E++ L++ +
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLK-YGADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HGA 104
Query: 156 LITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN---IE 212
+ G T LH AA +G LE+++ LL + + + DK G+TA +++ N E
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Query: 213 VVQEL 217
++Q+L
Sbjct: 164 ILQKL 168
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 29 AARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD 88
AARAG DEV+ ++ + + L G T L++AA+ GH+++V ++K AD
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWL------GHTPLHLAAKTGHLEIVEVLLKYG--AD 72
Query: 89 AGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNF 148
G H+AA GHLE+++VLL ++ D T LH AA GH+E++
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEV 131
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
L++ + + GKTA + NG ++ + L
Sbjct: 132 LLKYGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AAR G+ + ++ L+A + + TD G T LH+A K ++E+V+ L+K A VN D
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKY-GADVNAWDN 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G +PLH+A G +IV +LL + ++N + G T L A GH + +L ++G
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHG-ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 291 E 291
+
Sbjct: 138 D 138
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA+ G+L+ V+ +L K + + G T L++AA+ GH+++V ++K
Sbjct: 49 TPLHLAAKTGHLEIVEVLL------KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD K GF H+AA +GHLE+++VLL
Sbjct: 103 G--ADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G++PLH+A + G +IV +LL
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N + G T L A GH + +L +HG +
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
A +G+L+ LK + AD +A RTD+ +TALH A + E+V+ L++ VN D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
G SPLHIA G ++IV+ LL ++N VN+ G T L A +A +L E G
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 30 ARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK----CYD 85
A +G LDE+K+ + K L + +Q TAL+ A GH ++V +++ D
Sbjct: 14 AYSGKLDELKERILAD-----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
DA G+ HIAA G E++K LL V V+ T LH AA + E+
Sbjct: 69 KDDA------GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA 205
L+E ++ + TA+H AA G L+++ LL + I+ D +G T LH+A
Sbjct: 122 AVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLA 179
Query: 206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNL 259
+ +E + L+ + AS+ + + + +PL +A + G I++ L E ++
Sbjct: 180 CDEERVEEAKFLV-TQGASIYIENKEEKTPLQVA-KGGLGLILKRLAEGEEASM 231
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
++ A + + ++G T LH AA NG LE+++ LL + + D G T L +A
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALF 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
++E+V+ L+K A VN D +G++PLH+A G +IV +LL N ++N ++ G+T
Sbjct: 91 GHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLRE 287
A D + G+ +LA +L++
Sbjct: 149 AFDISIDNGNEDLAEILQK 167
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD + +G+ H+AA GHLE+++VLL ++ VD T L AA+ GH+E++
Sbjct: 38 ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++ + + + G T LH AA G LE+++ LL + + + DK G+TA +++
Sbjct: 97 EVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQN---IEVVQEL 217
N E++Q+L
Sbjct: 155 DNGNEDLAEILQKL 168
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR GR + ++ L+A + + D G T LH+A ++E+V+ L+K A VN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLK-NGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
VD G +PL +A G +IV +LL N ++N + G T L A GH + +L +
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 288 HGVE 291
+G +
Sbjct: 135 NGAD 138
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T L AA G+L+ V+ +L + ++ G T L++AA +GH+++V ++K
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADVNANDM------EGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
AD + + G AF I+ G+ ++ ++L
Sbjct: 136 G--ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
++ A + + G T LH AA G E+++ LL + + R D G T LH+A
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADN 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
++E+V+ L+K A VN D G +PLH+A +G +IV +LL + ++N ++ G+T
Sbjct: 91 GHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLRE 287
A D + G+ +LA +L++
Sbjct: 149 AFDISIDNGNEDLAEILQK 167
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 29 AARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD 88
AARAG DEV+ ++ + + G T L++AA GH ++V ++K AD
Sbjct: 21 AARAGQDDEVRILMANGADVN------AHDDQGSTPLHLAAWIGHPEIVEVLLKHG--AD 72
Query: 89 AGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNF 148
+ +G+ H+AA GHLE+++VLL Y D T LH AA +GH+E++
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLK-YGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
L++ + + GKTA + NG ++ + L
Sbjct: 132 LLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AAR G+ + ++ L+A + + D +G T LH+A + E+V+ L+K A VN DT
Sbjct: 21 AARAGQDDEVRILMANGADVNAH-DDQGSTPLHLAAWIGHPEIVEVLLK-HGADVNARDT 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G +PLH+A G +IV +LL ++N + G T L A GH + +L +HG
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYG-ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 291 E 291
+
Sbjct: 138 D 138
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D +G++PLH+A G +IV +LL +
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N + G T L A GH + +L ++G +
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD 105
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALH-TAAMQGHVEVLNFLIEA--ESSLI 157
H A E ++ LL P L + D LH + + Q H E+ +FL+ +L
Sbjct: 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLD 65
Query: 158 TISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK---KGQTALHMAVKGQNIEVV 214
+G T H A G LEV+K+L D + +K +G T LH+AV + EV
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE 274
Q LI+ ASV + D PLH A G +++ LL ++ +N ++ G T L A
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 275 KTGHSNLAALLRE-HGVE 291
GH + A LL E +G E
Sbjct: 183 AEGHGDAAVLLVEKYGAE 200
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 13/235 (5%)
Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI- 81
+ LH A +V+++L LL +++Q G L+ + + ++ + ++
Sbjct: 3 NYPLHQACMENEFFKVQELLHSK-----PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Query: 82 KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL--AVYPELAMTVDLTNTTALHTAAM 139
K ++ +G+ FHIA G+LEV+K L + P+L + T LH A
Sbjct: 58 KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVG 116
Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQ 199
+ EV FLIE +S + I + LH AA G L++++ L DK+G
Sbjct: 117 KKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175
Query: 200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
T L A+ + + L++ A ++VD KG +A EQ+ + L N
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET-NLN 260
LH A VQEL+ ++P+ + D G PLH + +I LL+ E NL+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 261 GV-NRTGETALDTAEKTGH 278
+ +G T A G+
Sbjct: 66 DYPDDSGWTPFHIACSVGN 84
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
Query: 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALH-TAAMQGHVEVLNFLIEA--ESSL 156
H A E ++ LL P L + D LH + + Q H E+ +FL+ +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNL 64
Query: 157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK---KGQTALHMAVKGQNIEV 213
+G T H A G LEV+K+L D + +K +G T LH+AV + EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
Q LI+ ASV + D PLH A G +++ LL ++ +N ++ G T L A
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 274 EKTGHSNLAALLRE-HGVE 291
GH + A LL E +G E
Sbjct: 182 LAEGHGDAAVLLVEKYGAE 200
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 13/235 (5%)
Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI- 81
+ LH A +V+++L LL +++Q G L+ + + ++ + ++
Sbjct: 3 NYPLHQACMENEFFKVQELLHSK-----PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Query: 82 KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL--AVYPELAMTVDLTNTTALHTAAM 139
K ++ +G+ FHIA G+LEV+K L + P+L + T LH A
Sbjct: 58 KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVG 116
Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQ 199
+ EV FLIE +S + I + LH AA G L++++ L DK+G
Sbjct: 117 KKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175
Query: 200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
T L A+ + + L++ A ++VD KG +A EQ+ + L N
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALH-TAAMQGHVEVLNFLIEA--ESSLI 157
H A E ++ LL P L + D LH + + Q H E+ +FL+ +L
Sbjct: 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLD 65
Query: 158 TISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK---KGQTALHMAVKGQNIEVV 214
+G T H A G LEV+K+L D + +K +G T LH+AV + EV
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE 274
Q LI+ ASV + D PLH A G +++ LL ++ +N ++ G T L A
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 275 KTGHSNLAALLRE-HGVE 291
GH + A LL E +G E
Sbjct: 183 AEGHGDAAVLLVEKYGAE 200
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 13/235 (5%)
Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI- 81
+ LH A +V+++L LL +++Q G L+ + + ++ + ++
Sbjct: 3 NYPLHQACMENEFFKVQELLHSK-----PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Query: 82 KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL--AVYPELAMTVDLTNTTALHTAAM 139
K ++ +G+ FHIA G+LEV+K L + P+L + T LH A
Sbjct: 58 KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVG 116
Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQ 199
+ EV FLIE +S + I + LH AA G L++++ L DK+G
Sbjct: 117 KKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175
Query: 200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
T L A+ + + L++ A ++VD KG +A EQ+ + L N
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET-NLN 260
LH A VQEL+ ++P+ + D G PLH + +I LL+ E NL+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 261 GV-NRTGETALDTAEKTGH 278
+ +G T A G+
Sbjct: 66 DYPDDSGWTPFHIACSVGN 84
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
+G T LH+AA+NG E +K LL+ + + R+ K G T LH+A K + E+V+ L+ A+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLL-AKG 65
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
A VN GN+P H+A + G +IV+LL A
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 196 KKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS 255
K G T LH A K + E V++L+ ++ A VN GN+PLH+A + G +IV+LLLA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 256 ETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N ++ G T A+K GH + LL G +
Sbjct: 66 -ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 131 TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVI 190
T LH AA GH E + L+ ++ + + +G T LH AA+NG E++K LLA + +
Sbjct: 10 NTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 191 AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVN 226
R+ K G T H+A K + E+V+ L+ A+ A VN
Sbjct: 69 NARS-KDGNTPEHLAKKNGHHEIVK-LLDAKGADVN 102
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152
+++G H AAK GH E +K LL+ ++ NT LH AA GH E++ L+ A
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTP-LHLAAKNGHAEIVKLLL-A 63
Query: 153 ESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT 194
+ + + +G T H A +NG E++K L A + + R+
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 16 QLTGKRD-DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHV 74
+ G +D +T LH+AA+ G+ +EVK +L+ + + + G T L++AA+ GH
Sbjct: 2 HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS------KDGNTPLHLAAKNGHA 55
Query: 75 DLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
++V ++ AD ++++G H+A K GH E++K+L A
Sbjct: 56 EIVKLLL--AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 59 QSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV 118
+ G T L+ AA+ GH + V +++ AD ++++G H+AAK GH E++K+LLA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 119 YPELAMTVDLTNTTALHTAAMQGHVEVLNFL 149
++ NT H A GH E++ L
Sbjct: 65 GADVNARSKDGNTPE-HLAKKNGHHEIVKLL 94
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
GN+PLH A + G + V+ LL+ ++N ++ G T L A K GH+ + LL G +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 292 SAKNMKPQNNP 302
K N P
Sbjct: 68 VNARSKDGNTP 78
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSVIAIRT 194
AA G + + LI A + + + G T LH AA +G LE+++ LL AD A
Sbjct: 21 AARAGQDDEVRILI-ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA--- 76
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
D G T LH+A ++E+V+ L+K A VN D G++PLH+A +G +IV +LL
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKY-GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
++N ++ G+TA D + G+ +LA R
Sbjct: 136 G-ADVNAQDKFGKTAFDISIDNGNEDLAKSCR 166
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 10/157 (6%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + + +G T L++AA GH+++V ++K
Sbjct: 18 LLEAARAGQDDEVRILIANGADVN------AVDNTGLTPLHLAAVSGHLEIVEVLLKHG- 70
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
AD GF H+AA GHLE+++VLL Y D+T +T LH AA +GH+E+
Sbjct: 71 -ADVDAADVYGFTPLHLAAMTGHLEIVEVLLK-YGADVNAFDMTGSTPLHLAADEGHLEI 128
Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
+ L++ + + GKTA + NG ++ K+
Sbjct: 129 VEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + + D G T LH+A ++E+V+ L+K A V+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
D G +PLH+A G +IV +LL ++N + TG T L A GH + +L +
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 288 HGVE 291
+G +
Sbjct: 135 YGAD 138
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN VD G +PLH+A G +IV +LL +
Sbjct: 15 GKKLLEAARAGQDDEV--RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
+++ + G T L A TGH + +L ++G +
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA +G+L+ V+ +L + ++ G T L++AA GH+++V ++K
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVDAADVY------GFTPLHLAAMTGHLEIVEVLLKY 102
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD G H+AA EGHLE+++VLL
Sbjct: 103 G--ADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
++ A + + S G T LH AA G LE+++ LL + + D G T LH+A
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADR 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
++EVV+ L+K A VN D G +PLH+A G +IV +LL + ++N ++ G+T
Sbjct: 91 GHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLRE 287
A D + G+ +LA +L++
Sbjct: 149 AFDISIDNGNEDLAEILQK 167
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD G+ H+AA GHLE+++VLL ++ D T LH AA +GH+EV+
Sbjct: 38 ADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++ + + + NG T LH AA G LE+++ LL + + + DK G+TA +++
Sbjct: 97 EVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQN---IEVVQEL 217
N E++Q+L
Sbjct: 155 DNGNEDLAEILQKL 168
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AAR G+ + ++ L+A + + +D G T LH+A ++E+V+ L+K A VN D+
Sbjct: 21 AARAGQDDEVRILMANGADVN-ASDHVGWTPLHLAAYFGHLEIVEVLLK-NGADVNADDS 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G +PLH+A +G ++V +LL N ++N + G T L A GH + +L +HG
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLKNG-ADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 291 E 291
+
Sbjct: 138 D 138
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA G+L+ V+ +L + + L G T L++AA+ GH+++V ++K
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSL------GVTPLHLAADRGHLEVVEVLLKN 102
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD NGF H+AA GHLE+++VLL
Sbjct: 103 G--ADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD + G+ H+AA GHLE+++VLL ++ D T LH AA +GH+E++
Sbjct: 38 ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
L++ + + S S+G T LH AA+ G LE+++ LL + + + DK G+TA +++
Sbjct: 97 EVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQN---IEVVQEL 217
N E++Q+L
Sbjct: 155 DNGNEDLAEILQKL 168
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AAR G+ + ++ L+A + + R D G T LH+A ++E+V+ L+K A VN D+
Sbjct: 21 AARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDS 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G +PLH+A R+G +IV +LL N ++N + G T L A K GH + +L ++G
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLKNG-ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 291 E 291
+
Sbjct: 138 D 138
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA G+L+ V+ +L + K+ L G T L++AA GH+++V ++K
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSL------GVTPLHLAARRGHLEIVEVLLKN 102
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD +GF H+AAK GHLE+++VLL
Sbjct: 103 G--ADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + A D G+T LHMA ++E+V+ L++ A VN
Sbjct: 6 LLEAARAGQDDEVRILMA-NGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNA 63
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
VDT G +PLH+A G +IV +LL ++N + TG T L A GH + +L +
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 288 HGVE 291
HG +
Sbjct: 123 HGAD 126
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L+A + A D T LH AA GH+E++ L+ + + + +
Sbjct: 9 AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD-T 66
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
NG T LH AA G LE+++ LL + + + D G T L++A ++E+V+ L+K
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLLK-HG 124
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
A VN D G + I+ G E + +L
Sbjct: 125 ADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ +A + G T L++AA GH+++V +++ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADAN------AYDHYGRTPLHMAAAVGHLEIVEVLLR--N 57
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
AD NG H+AA GHLE+++VLL Y D T T L+ AA GH+E+
Sbjct: 58 GADVNAVDTNGTTPLHLAASLGHLEIVEVLLK-YGADVNAKDATGITPLYLAAYWGHLEI 116
Query: 146 LNFLIEAESSLITISRSNGKTAL 168
+ L++ + + GKTA
Sbjct: 117 VEVLLK-HGADVNAQDKFGKTAF 138
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
GK L AAR G+ + ++ L+A + + D+KG T LH+A ++E+V+ L+K A
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNA-NDRKGNTPLHLAADYDHLEIVEVLLK-HGA 71
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA 283
VN D G++PLH+A G +IV +LL + ++N ++ G+TA D + G+ +LA
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 284 LLRE 287
+L++
Sbjct: 131 ILQK 134
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D KGN+PLH+A +IV +LL +
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N + G T L A GH + +L +HG +
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 29 AARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD 88
AARAG DEV+ ++ + ++ G T L++AA+Y H+++V ++K AD
Sbjct: 21 AARAGQDDEVRILMANGADVN------ANDRKGNTPLHLAADYDHLEIVEVLLKHG--AD 72
Query: 89 AGIKARNGFDAFHIAAKEGHLEVLKVLL 116
+G H+AA GHLE+++VLL
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L+A ++ D T LH AA H+E++ L++ + + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDN 78
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN---IEVVQEL 217
+G T LH AA G LE+++ LL + + + DK G+TA +++ N E++Q+L
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD R G H+AA HLE+++VLL ++ D +T LH AA+ GH+E++
Sbjct: 38 ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH-DNDGSTPLHLAALFGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
L++ + + GKTA + NG ++ + L
Sbjct: 97 EVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
+ G T L++AA +GH+++V ++K AD + + G AF I+ G+ ++ ++L
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHG--ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 30/207 (14%)
Query: 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154
+G A H A + +++++K L+ + D LH AA G++++ +LI ++
Sbjct: 72 DGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLI-SQG 129
Query: 155 SLITISRSNGKTALH----------------------SAARNGRLEVL----KTLLAADS 188
+ + S G T L AAR ++ + L +
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
+ +R K G TALH+A EV++ LI+A VN+ D G +PLH A G+E+
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEAC 248
Query: 249 RLLLANSETNLNGVNRTGETALDTAEK 275
R+L+ N ++ VN+ G+TA D A++
Sbjct: 249 RILVENL-CDMEAVNKVGQTAFDVADE 274
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152
A++G A H+AA +G+ EVLK+L+ ++ + D T LH AA G E L+E
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACRILVEN 254
Query: 153 ESSLITISRSNGKTALHSAARN--GRLEVLK 181
+ +++ G+TA A + G LE L+
Sbjct: 255 LCDMEAVNKV-GQTAFDVADEDILGYLEELQ 284
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
L +AA +G +E L L++ + + G+TAL + G E+ + LL + ++
Sbjct: 9 LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
D+ G +H A + ++ +Q L++ + A VN+ D +GN PLH+A ++G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGQLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
++ +N+ N G+TA D A G + + +L++ +G A N++
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 105 KEGHLEVLKVLL--AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
K G+ E+ + LL P+L D T +H AA G ++ L L+E ++ + I +
Sbjct: 46 KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDN 101
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA-VKGQNIEVVQELIKAE 221
G LH AA+ G L V++ L+ + + KG TA +A + G+N EVV L++A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN-EVV-SLMQAN 159
Query: 222 PAS 224
A
Sbjct: 160 GAG 162
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
++++G ++ AA G +D + +++ AD I+ G H+AAKEGHL V++ L+
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 117 AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFL 149
+ TA A + G EV++ +
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
+H AARAG LD ++ +L + + ++ G L++AA+ GH+ +V ++K +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNI------EDNEGNLPLHLAAKEGHLRVVEFLVK-HT 126
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
++ G + G A +A G EV+ ++ A
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
L +AA +G +E L L++ + + G+TAL + G E+ + LL + ++
Sbjct: 9 LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
D+ G +H A + ++ +Q L++ + A VN+ D +GN PLH+A ++G ++V L+
Sbjct: 67 -DRTGNAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
++ +N+ N G+TA D A G + + +L++ +G A N++
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 105 KEGHLEVLKVLL--AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
K G+ E+ + LL P+L D T +H AA G ++ L L+E ++ + I +
Sbjct: 46 KLGNPEIARRLLLRGANPDLK---DRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDN 101
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA-VKGQNIEVVQELIKAE 221
G LH AA+ G L V++ L+ + + KG TA +A + G+N EVV L++A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN-EVVS-LMQAN 159
Query: 222 PAS 224
A
Sbjct: 160 GAG 162
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
++++G ++ AA G +D + +++ AD I+ G H+AAKEGHL V++ L+
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 117 AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFL 149
+ TA A + G EV++ +
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 11 KKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAE 70
+ L + + +H AARAG LD ++ +L + + ++ G L++AA+
Sbjct: 59 RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI------EDNEGNLPLHLAAK 112
Query: 71 YGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
GH+ +V ++K + ++ G + G A +A G EV+ ++ A
Sbjct: 113 EGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 58 NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA--FHIAAKEGHLEVLKVL 115
+Q G + L+VAA +G DL+ ++K A+AG ARN A H+A ++GH +V+K L
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLK--HGANAG--ARNADQAVPLHLACQQGHFQVVKCL 138
Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
L + DL+ T L A GH E++ L++ +S I S + G TALH A
Sbjct: 139 LDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEK 196
Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
+ V++ LL + + + +K+ +TA+ A + I EL++ P+ V +D
Sbjct: 197 HVFVVELLLLHGASVQV-LNKRQRTAVDCAEQNSKI---MELLQVVPSCVASLD 246
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQE 216
+ ++ +G + LH AA +GR +++ LL + R + LH+A + + +VV+
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA-VPLHLACQQGHFQVVKC 137
Query: 217 LIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKT 276
L+ + A N D GN+PL A G ++V LLL + ++N N G TAL A
Sbjct: 138 LLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIE 195
Query: 277 GHSNLAALLREHGV---------ESAKNMKPQNNPARELKQTV 310
H + LL HG +A + QN+ EL Q V
Sbjct: 196 KHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVV 238
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Query: 116 LAVYPELAMTVDLTN---TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA 172
LA P + V++T+ ++ LH AA+ G +++ L++ ++ ++ LH A
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLAC 127
Query: 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKG 232
+ G +V+K LL +++ + D G T L A G + E+V L++ AS+N + KG
Sbjct: 128 QQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKG 185
Query: 233 NSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKT 276
N+ LH A + +V LLL + ++ +N+ TA+D AE+
Sbjct: 186 NTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQN 228
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 49/163 (30%)
Query: 171 AARNGRLEVLKTLL---------AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
A +G LE+++ LL A D+V A + H + Q+ +
Sbjct: 18 AVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPE-----FCHPLCQCPKCAPAQKRLAKV 72
Query: 222 PAS---VNMVDTKGNSPLHIATRKGREQIVRLLLA------------------------- 253
PAS VN+ G+SPLH+A GR ++ LLL
Sbjct: 73 PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF 132
Query: 254 -------NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
+S N + +G T L A GH L ALL +HG
Sbjct: 133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
LH A + G+ VK +L + K+L SG T L A GH +LVA +++
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDL------SGNTPLIYACSGGHHELVALLLQ--- 173
Query: 86 LADAGIKARN--GFDAFHIAAKEGHLEVLKVLL 116
A I A N G A H A E H+ V+++LL
Sbjct: 174 -HGASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
+ T +G+ + ++ + + +G + LH A R GR V++ L+ + I +
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV- 67
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
++ T LH+A + ++VQ+L++ + A +N V+ GN PLH A G++Q+ L+A
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM 296
N ++ N+ GE +D A+ + L LLRE + +N+
Sbjct: 127 NGAL-VSICNKYGEMPVDKAK----APLRELLRERAEKMGQNL 164
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
GF H A +EG V+++L+ + + ++ + T LH AA GH +++ L++ ++
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Query: 156 LITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA 205
+ ++ +G LH A G+ +V + L+A ++++I +K G+ + A
Sbjct: 98 INAVN-EHGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPVDKA 145
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
L +AA +G +E L L++ + + G+TAL + G E+ + LL + ++
Sbjct: 9 LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
D+ G +H A + ++ +Q L++ + A VN+ D +GN PLH+A ++G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
++ +N+ N G+TA D A G + + +L++ +G A N++
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 105 KEGHLEVLKVLL--AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
K G+ E+ + LL P+L D T +H AA G ++ L L+E ++ + I +
Sbjct: 46 KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDN 101
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA-VKGQNIEVVQELIKAE 221
G LH AA+ G L V++ L+ + + KG TA +A + G+N EVV L++A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN-EVVS-LMQAN 159
Query: 222 PAS 224
A
Sbjct: 160 GAG 162
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
++++G ++ AA G +D + +++ AD I+ G H+AAKEGHL V++ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 117 AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFL 149
+ TA A + G EV++ +
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
+H AARAG LD ++ +L + + ++ G L++AA+ GH+ +V ++K +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNI------EDNEGNLPLHLAAKEGHLRVVEFLVK-HT 126
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
++ G + G A +A G EV+ ++ A
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
L +AA +G +E L L++ + + G+TAL + G E+ + LL + ++
Sbjct: 9 LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
D+ G +H A + ++ +Q L++ + A VN+ D +GN PLH+A ++G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLENQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
++ +N+ N G+TA D A G + + +L++ +G A N++
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 105 KEGHLEVLKVLL--AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
K G+ E+ + LL P+L D T +H AA G ++ L L+E ++ + I +
Sbjct: 46 KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDN 101
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA-VKGQNIEVVQELIKAE 221
G LH AA+ G L V++ L+ + + KG TA +A + G+N EVV L++A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN-EVVS-LMQAN 159
Query: 222 PAS 224
A
Sbjct: 160 GAG 162
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
++++G ++ AA G +D + +++ + AD I+ G H+AAKEGHL V++ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLE--NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 117 AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFL 149
+ TA A + G EV++ +
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
+H AARAG LD ++ +L + + ++ G L++AA+ GH+ +V ++K +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNI------EDNEGNLPLHLAAKEGHLRVVEFLVK-HT 126
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
++ G + G A +A G EV+ ++ A
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L+A ++ D+ T LH AA GH+E++ L++ + + +
Sbjct: 21 AARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDT 78
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
G T LH AA G LE+++ LL + + + D G T LH+A ++E+V+ L+K
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLKY-G 136
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
A VN D G + I+ G E + +L
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
G+ H+AA GHLE+++VLL ++ D +T LH AA GH+E++ L++ +
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 156 LITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN---IE 212
+ NG T LH AA G LE+++ LL + + + DK G+TA +++ N E
Sbjct: 106 -VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISINNGNEDLAE 163
Query: 213 VVQEL 217
++Q+L
Sbjct: 164 ILQKL 168
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR GR + ++ L+A + + D G T LH+A ++E+V+ L+K A VN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLK-NGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
DT G++PLH+A G +IV +LL N ++N + G T L A GH + +L +
Sbjct: 76 YDTLGSTPLHLAAHFGHLEIVEVLLKNG-ADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 288 HGVE 291
+G +
Sbjct: 135 YGAD 138
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA G+L+ V+ +L + + L G T L++AA +GH+++V ++K
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTL------GSTPLHLAAHFGHLEIVEVLLK- 101
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
+ AD K NG H+AA GHLE+++VLL
Sbjct: 102 -NGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 123 AMTVDLTNTTA---LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179
AM + L N+ A L AA G VE + L +S T LH AA R+ V
Sbjct: 2 AMGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 61
Query: 180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239
++ LL + + + DK G LH A + EV + L+K A VN+ D +PLH A
Sbjct: 62 VEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEA 119
Query: 240 TRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
KG+ +I +LLL + + NR G T LD K G +++ LLR
Sbjct: 120 AAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 164
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 2/158 (1%)
Query: 157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQE 216
I++ S L AA+ G +E +K L SV + + T LH A + VV+
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 217 LIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKT 276
L++ A V+ D G PLH A G ++ LL+ + +N + T L A
Sbjct: 65 LLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAK 122
Query: 277 GHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIK 314
G + LL +HG + K + N P +K +DI+
Sbjct: 123 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQ 160
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
+ T +G+ + ++ + + +G + LH A R GR V++ L+ + I +
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV- 62
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
++ T LH+A + ++VQ+L++ + A +N V+ GN PLH A G++Q+ L+A
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVA 121
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM 296
N ++ N+ GE +D A+ + L LLRE + +N+
Sbjct: 122 NGAL-VSICNKYGEMPVDKAK----APLRELLRERAEKMGQNL 159
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154
+GF H A +EG V+++L+ + + ++ + T LH AA GH +++ L++ ++
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKA 91
Query: 155 SLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVV 214
+ ++ +G LH A G+ +V + L+A ++++I +K G+ + A K E++
Sbjct: 92 DINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPVDKA-KAPLRELL 148
Query: 215 QELIKAEPASVNM 227
+E +AE N+
Sbjct: 149 RE--RAEKMGQNL 159
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + + DK G T LH+A ++E+V+ L+K A VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
+D G +PLH+ G +IV +LL + ++N ++ G+TA D + G+ +LA +L++
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G +PLH+A +IV +LL N
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N ++ GET L GH + +L +HG +
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD + + G H+AA HLE+++VLL ++ +D T LH AM GH+E++
Sbjct: 38 ADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
L++ + + GKTA + NG ++ + L
Sbjct: 97 EVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 164 GKTALHSAARNGRLEVLKTLL--AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
G T LH AA N LE+++ LL AD V AI D G+T LH+ ++E+V+ L+K
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGAD-VNAI--DAIGETPLHLVAMYGHLEIVEVLLK-H 102
Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLL 251
A VN D G + I+ G E + +L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 61 GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
GET L++ A YGH+++V ++K AD + + G AF I+ G+ ++ ++L
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHG--ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 17/209 (8%)
Query: 59 QSGETALYVAAEYGHVDLVAEMIKCY--DLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
+ G++ L++A + L E+I+ DLA + H+A E+ + LL
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 117 A--VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES-----SLITISRSNGKTALH 169
PEL D T LH A QG + + L ++ + S++ + NG T LH
Sbjct: 63 GAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 119
Query: 170 SAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
A+ +G L +++ L++ + + + G+TALH+AV QN ++V L+K A VN V
Sbjct: 120 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVT 178
Query: 230 TKGNSPLHI----ATRKGREQIVRLLLAN 254
+G SP + + + ++Q+ +L L N
Sbjct: 179 YQGYSPYQLTWGRPSTRIQQQLGQLTLEN 207
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEM 80
R +T LH A G L V + L +L N +G T L++A+ +G++ +V +
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 133
Query: 81 IKCYDLADAGIKAR---NGFDAFHIAAKEGHLEVLKVLL 116
+ A + A+ NG A H+A + +++ +LL
Sbjct: 134 VS----LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 17/209 (8%)
Query: 59 QSGETALYVAAEYGHVDLVAEMIKCY--DLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
+ G++ L++A + L E+I+ DLA + H+A E+ + LL
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 117 A--VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES-----SLITISRSNGKTALH 169
PEL D T LH A QG + + L ++ + S++ + NG T LH
Sbjct: 66 GAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 170 SAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
A+ +G L +++ L++ + + + G+TALH+AV QN ++V L+K A VN V
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVT 181
Query: 230 TKGNSPLHI----ATRKGREQIVRLLLAN 254
+G SP + + + ++Q+ +L L N
Sbjct: 182 YQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEM 80
R +T LH A G L V + L +L N +G T L++A+ +G++ +V +
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136
Query: 81 IKCYDLADAGIKAR---NGFDAFHIAAKEGHLEVLKVLL 116
+ A + A+ NG A H+A + +++ +LL
Sbjct: 137 VS----LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
L +AA +G +E L L++ ++ + G+TAL + G E+ + LL + ++
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQN-GFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
D+ G +H A + ++ +Q L++ + A VN+ D +GN PLH+A ++G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
++ +N+ N G+TA D A G + + +L++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 105 KEGHLEVLKVLL--AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
K G+ E+ + LL P+L D T +H AA G ++ L L+E ++ + I +
Sbjct: 46 KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDN 101
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA-VKGQNIEVVQELIKAE 221
G LH AA+ G L V++ L+ + + KG TA +A + G+N EVV L++A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN-EVVS-LMQAN 159
Query: 222 PAS 224
A
Sbjct: 160 GAG 162
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
++++G ++ AA G +D + +++ AD I+ G H+AAKEGHL V++ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 117 AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFL 149
+ TA A + G EV++ +
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
+H AARAG LD ++ +L + + ++ G L++AA+ GH+ +V ++K +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNI------EDNEGNLPLHLAAKEGHLRVVEFLVK-HT 126
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
++ G + G A +A G EV+ ++ A
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGK-------TALHSAARNGRLEV 179
D TALH + + V+ L++ S + + + N TAL + +E
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLD--SGVCKVDKQNRAGYSPIMLTALATLKTQDDIET 165
Query: 180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239
+ L ++ A + + GQTAL +AV ++VV+ L+ E A VN+ D G++ L A
Sbjct: 166 VLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCA 223
Query: 240 TRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL 285
G ++I LLLA +++ +R G TAL A G S +A++L
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 40 DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA 99
DI T + +L + K +Q+G+TAL +A +G VD+V ++ C AD ++ +G A
Sbjct: 162 DIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE--ADVNVQDDDGSTA 219
Query: 100 FHIAAKEGHLEVLKVLLAVYPELAMTV-DLTNTTALHTAAMQGHVEVLNFL 149
A + GH E+ +LLAV P +++ D +TAL A G E+ + L
Sbjct: 220 LMCACEHGHKEIAGLLLAV-PSCDISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
AA G VE + L +S T LH AA R+ V++ LL + + + DK
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DK 73
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
G LH A + EV + L+K A VN+ D +PLH A KG+ +I +LLL +
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG- 131
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLR 286
+ NR G T LD K G +++ LLR
Sbjct: 132 ADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 160
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 2/156 (1%)
Query: 159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
+ S L AA+ G +E +K L SV + + T LH A + VV+ L+
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 219 KAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH 278
+ A V+ D G PLH A G ++ LL+ + +N + T L A G
Sbjct: 63 Q-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGK 120
Query: 279 SNLAALLREHGVESAKNMKPQNNPARELKQTVSDIK 314
+ LL +HG + K + N P +K +DI+
Sbjct: 121 YEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQ 156
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
AA G VE + L +S T LH AA R+ V++ LL + + + DK
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DK 75
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
G LH A + EV + L+K A VN+ D +PLH A KG+ +I +LLL +
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG- 133
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLR 286
+ NR G T LD K G +++ LLR
Sbjct: 134 ADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 162
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AA+ G +E +K L SV + + T LH A + VV+ L++ A V+ D
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDK 75
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
G PLH A G ++ LL+ + +N + T L A G + LL +HG
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 291 ESAKNMKPQNNPARELKQTVSDIK 314
+ K + N P +K +DI+
Sbjct: 135 DPTKKNRDGNTPLDLVKDGDTDIQ 158
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L A R G+ + ++ L+A + + D G T LH+A K ++E+V+ L+K A VN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
D+ G +PLH+A G +IV +LL ++N ++ G+TA D + G+ +LA +L++
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L GQ+ EV ++ A A VN +D G +PLH+A ++G +IV +LL +
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N + G T L A GH + +L E+G +
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
A + G + +++L+A ++ +D T LH AA +GH+E++ L++ + + S S
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDS 78
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN---IEVVQEL 217
G+T LH AA G LE+++ LL + + + DK G+TA +++ N E++Q+L
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
G H+AAK GHLE+++VLL ++ + D T LH AA GH+E++ L+E +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 156 LITISRSNGKTALHSAARNGRLEVLKTL 183
+ GKTA + NG ++ + L
Sbjct: 106 -VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA+ G+L+ V+ +L K + + G T L++AA GH+++V E++
Sbjct: 49 TPLHLAAKRGHLEIVEVLL------KHGADVNASDSWGRTPLHLAATVGHLEIV-EVLLE 101
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
Y AD + + G AF I+ G+ ++ ++L
Sbjct: 102 YG-ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + + D+ G T LH+A + ++E+V+ L+K A VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
D G +PLH+A +G +IV +LL + ++N ++ G+TA D + G+ +LA +L++
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD +G H+AA+ GHLE+++VLL Y D T LH AA++GH+E++
Sbjct: 38 ADVNALDEDGLTPLHLAAQLGHLEIVEVLLK-YGADVNAEDNFGITPLHLAAIRGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
L++ + + GKTA + NG ++ + L
Sbjct: 97 EVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN +D G +PLH+A + G +IV +LL
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N + G T L A GH + +L +HG +
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
+G T LH AA+ G LE+++ LL + + D G T LH+A ++E+V+ L+K
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRGHLEIVEVLLK-HG 103
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
A VN D G + I+ G E + +L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L A R G+ + ++ L+A + + D G T LH+A K ++E+V+ L+K A VN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
D G +PLH+A G +IV +LL ++N ++ G+TA D + G+ +LA +L++
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L GQ+ EV ++ A A VN +D G +PLH+A ++G +IV +LL +
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N + G T L A GH + +L E+G +
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
G H+AAK GHLE+++VLL ++ + D+ T LH AA GH+E++ L+E +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 156 LITISRSNGKTALHSAARNGRLEVLKTL 183
+ GKTA + NG ++ + L
Sbjct: 106 -VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
G T LH AA+ G LE+++ LL + + +D G+T LH+A ++E+V+ L++ A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNA-SDIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLL 251
VN D G + I+ G E + +L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA+ G+L+ V+ +L + ++ G T L++AA GH+++V E++
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIW------GRTPLHLAATVGHLEIV-EVLLE 101
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
Y AD + + G AF I+ G+ ++ ++L
Sbjct: 102 YG-ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L A R G+ + ++ L+A + + D G T LH+A K ++E+V+ L+K A VN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
D G +PLH+A G +IV +LL ++N ++ G+TA D + G+ +LA +L++
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L GQ+ EV ++ A A VN +D G +PLH+A ++G +IV +LL +
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N + G T L A GH + +L E+G +
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
G H+AAK GHLE+++VLL ++ D+ T LH AA GH+E++ L+E +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 156 LITISRSNGKTALHSAARNGRLEVLKTL 183
+ GKTA + NG ++ + L
Sbjct: 106 -VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
G T LH AA+ G LE+++ LL + + R D G+T LH+A ++E+V+ L++ A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLL 251
VN D G + I+ G E + +L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
T LH AA+ G+L+ V+ +L + +++ G T L++AA GH+++V E++
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDIW------GRTPLHLAATVGHLEIV-EVLLE 101
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
Y AD + + G AF I+ G+ ++ ++L
Sbjct: 102 YG-ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL-- 184
D N T LH AA+ ++++ + I + + + T LH A R G L ++ L+
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 185 AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT-RKG 243
AD + D +G + +H+A + + +V LI A+ V+M+D G +PL A R
Sbjct: 99 GADPSL---IDGEGCSCIHLAAQFGHTSIVAYLI-AKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 244 REQIVRLLLA-NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-SAKNMKPQN 300
RLLL N NL G TAL A G++ + +LL E G A+N+K ++
Sbjct: 155 SVDPTRLLLTFNVSVNL-GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES 212
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 18/204 (8%)
Query: 82 KCYDLADAGIKARN----GFDAFHIAAKEGHLEVLKVLL---AVYPELAMTVDLTNTTAL 134
+C +L +AG R H AA ++++K + A+ +L + N+T L
Sbjct: 24 RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL---NSTPL 80
Query: 135 HTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI 192
H A QGH+ ++ L++ A+ SLI G + +H AA+ G ++ L+A + +
Sbjct: 81 HWATRQGHLSMVVQLMKYGADPSLID---GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 193 RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT-KGNSPLHIATRKGREQIVRLL 251
D+ G T L A + L+ SVN+ D N+ LH A G ++ LL
Sbjct: 138 -MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
Query: 252 LANSETNLNGVNRTGETALDTAEK 275
L + N++ N GE+ALD A++
Sbjct: 197 L-EAGANVDAQNIKGESALDLAKQ 219
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 63 TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFD----AFHIAAKEGHLEVLKVLLAV 118
T L+ AA +DLV Y ++ I + G D H A ++GHL ++ V L
Sbjct: 44 TLLHWAAINNRIDLVK-----YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV-VQLMK 97
Query: 119 YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA-RNGRL 177
Y +D + +H AA GH ++ +LI A+ + + NG T L AA R +
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI-AKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH 237
+ + LL + + + TALH AV N V+ L++A A+V+ + KG S L
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALD 215
Query: 238 IATRK 242
+A ++
Sbjct: 216 LAKQR 220
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 10 KKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAA 69
K + QL G + T LH A R G+L V ++ + L + G + +++AA
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID------GEGCSCIHLAA 117
Query: 70 EYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGH-LEVLKVLLAVYPELAMTVDL 128
++GH +VA +I D + +NG AA H ++ ++LL + +
Sbjct: 118 QFGHTSIVAYLIA--KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175
Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSL 156
TALH A + G+ V++ L+EA +++
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANV 203
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + + + D+ G T L++A ++E+V+ L+K A VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
VD G +PLH+A G +I +LL + ++N ++ G+TA D + G+ +LA +L++
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G +PL++AT G +IV +LL N
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N V+ G T L A GH +A +L +HG +
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + K+ + G T LY+A +GH+++V ++K +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKD------EYGLTPLYLATAHGHLEIVEVLLK--N 69
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD GF H+AA GHLE+ +VLL
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLL 100
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
AD K G ++A GHLE+++VLL ++ VD T LH AA GH+E+
Sbjct: 38 ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIA 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
L++ + + GKTA + NG ++ + L
Sbjct: 97 EVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L+A ++ D T L+ A GH+E++ L++ + + + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD-A 78
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN---IEVVQEL 217
G T LH AA G LE+ + LL + + + DK G+TA +++ N E++Q+L
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQKL 135
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 167 ALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVN 226
AL AA + +K +L + D +G T L++AV +IE+ + LI A +N
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADIN 66
Query: 227 MVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
+ ++ +SP A +GR +I+ +L ++ +LN NR G AL A + GH + LL
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 287 EHGVES 292
E G E
Sbjct: 127 EDGRED 132
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
VD T L+ A +E+ LI+ + I + S + A GR E+L +L
Sbjct: 35 VDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQNSISDSPYLYAGAQGRTEILAYMLK 93
Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPL--HIATRKG 243
+ + ++ G AL A + +I+ V+ L++ ++ + G + L + R+G
Sbjct: 94 HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG 153
Query: 244 RE---QIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
+ IV+LL+ N + + + +G TA+D A + G++ ++ +L ++
Sbjct: 154 NQLYQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 133 ALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI 192
AL AA Q + + +++ + + + G T L+ A N +E+ K L+ + I +
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 193 RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
+ L+ +G+ E++ ++K +N + G + L A KG V+LLL
Sbjct: 68 QNSISDSPYLYAGAQGR-TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 253 ANSETNLNGVNRTGETALDTAEKTG-------HSNLAALLREHGVESA 293
+ +++ N G TAL E G + ++ LL E+G + +
Sbjct: 127 EDGREDIDFQNDFGYTAL--IEAVGLREGNQLYQDIVKLLMENGADQS 172
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)
Query: 100 FHIAAKEGHLEVLKVLLAVYPEL-AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLIT 158
H A GHL +K+LL ++ +T D T L A + G + +N L++ +S+
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
S+ + +H AAR G +E + +L+A I + G T L++A + Q V++L+
Sbjct: 154 --ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 210
Query: 219 KAEPASVNMVDTKG-NSPLHIATRKGREQIVRLLL 252
++ A VN KG +SPLH R E++ LL+
Sbjct: 211 ESG-ADVNQ--GKGQDSPLHAVVRTASEELACLLM 242
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA-A 186
+++ + +H AA+ GH L LI ++ + I ++ + LH A G L +K LL
Sbjct: 57 VSDWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115
Query: 187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ 246
V + D T L A + + V L++ ASV ++ SP+H A R+G +
Sbjct: 116 AQVNGVTADW--HTPLFNACVSGSWDCVNLLLQ-HGASVQ-PESDLASPIHEAARRGHVE 171
Query: 247 IVRLLLA 253
V L+A
Sbjct: 172 CVNSLIA 178
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 63 TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL----AV 118
+ L+ A GH+ V ++K + G+ A F+ A G + + +LL +V
Sbjct: 94 SPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFN-ACVSGSWDCVNLLLQHGASV 151
Query: 119 YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE 178
PE DL + +H AA +GHVE +N LI A I S+ T L+ A N +
Sbjct: 152 QPE----SDLA--SPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRA 204
Query: 179 VLKTLLAADSVIAIRTDKKGQTALHMAVK 207
+K LL +S + K + LH V+
Sbjct: 205 CVKKLL--ESGADVNQGKGQDSPLHAVVR 231
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
V++ I +SL + G+TALH AAR R + K LL A + I+ D G+T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 64
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
AV V Q LI+ ++ G +PL +A R E ++ L+ NS ++N V+
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDD 123
Query: 265 TGETAL 270
G++AL
Sbjct: 124 LGKSAL 129
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 4/197 (2%)
Query: 94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE 153
R G A H+AA+ + K LL + A D T LH A V LI
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 154 SSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV 213
++ + +G T L AAR +L+ L+ + + + D G++ALH A N++
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 140
Query: 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
L+K A+ +M + + +PL +A R+G + ++LL + N + + D A
Sbjct: 141 AVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIA 198
Query: 274 EKTGHSNLAALLREHGV 290
++ H ++ LL E+ +
Sbjct: 199 QERMHHDIVRLLDEYNL 215
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
V++ I +SL + G+TALH AAR R + K LL A + I+ D G+T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHA 61
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
AV V Q L++ ++ G +PL +A R E ++ L+ NS ++N V+
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLI-NSHADVNAVDD 120
Query: 265 TGETAL 270
G++AL
Sbjct: 121 LGKSAL 126
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 4/195 (2%)
Query: 94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE 153
R G A H+AA+ + K LL + A D T LH A V L+
Sbjct: 20 RTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 154 SSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV 213
++ + +G T L AAR +L+ L+ + + + D G++ALH A N++
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 137
Query: 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
L+K A+ +M + K +PL +A R+G + ++LL + N + + D A
Sbjct: 138 AVVLLK-NGANKDMQNNKEETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIA 195
Query: 274 EKTGHSNLAALLREH 288
++ H ++ LL E+
Sbjct: 196 QERMHHDIVRLLDEY 210
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)
Query: 100 FHIAAKEGHLEVLKVLLAVYPEL-AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLIT 158
H A GHL +K+LL ++ +T D T L A + G + +N L++ +S+
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
S+ + +H AAR G +E + +L+A I + G T L++A + Q V++L+
Sbjct: 98 --ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 154
Query: 219 KAEPASVNMVDTKG-NSPLHIATRKGREQIVRLLL 252
++ A VN KG +SPLH R E++ LL+
Sbjct: 155 ESG-ADVN--QGKGQDSPLHAVARTASEELACLLM 186
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 8/186 (4%)
Query: 128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA-A 186
+++ + +H AA+ GH L LI ++ + I ++ + LH A G L +K LL
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ 246
V + D T L A + + V L++ ASV ++ SP+H A R+G +
Sbjct: 60 AQVNGVTAD--WHTPLFNACVSGSWDCVNLLLQ-HGASVQ-PESDLASPIHEAARRGHVE 115
Query: 247 IVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL 306
V L+A + ++ G E + + LL E G + + K Q++P +
Sbjct: 116 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL-ESGADVNQG-KGQDSPLHAV 173
Query: 307 KQTVSD 312
+T S+
Sbjct: 174 ARTASE 179
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 63 TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL----AV 118
+ L+ A GH+ V ++K + G+ A F+ A G + + +LL +V
Sbjct: 38 SPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFN-ACVSGSWDCVNLLLQHGASV 95
Query: 119 YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE 178
PE DL + +H AA +GHVE +N LI A I S+ T L+ A N +
Sbjct: 96 QPE----SDLA--SPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRA 148
Query: 179 VLKTLLAADSVIAIRTDKKGQ-TALHMAVK 207
+K LL + + + KGQ + LH +
Sbjct: 149 CVKKLLESGADV---NQGKGQDSPLHAVAR 175
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRT-DKKGQTALHMAVKGQNIEVVQELIKAEPASVN 226
LH AA+ G L L+ L D+ + + DK G TAL+ A G + ++V+ L +N
Sbjct: 77 LHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 227 MVDTKGNSPLHIATRKGREQIVRLLLA-NSETNLNGVNRTGETALDTAEKTGHSNLAALL 285
+ G++ LH A KG IV+LLLA + T+L + + + A D A ++L L
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK--KLAFDXATNAACASL--LK 190
Query: 286 REHGVESAKNM 296
++ G ++ + +
Sbjct: 191 KKQGTDAVRTL 201
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
D LH AA+ GNL +++ L + + +++G TALY A GH D+V +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDN------RVGVNGLDKAGSTALYWACHGGHKDIVEXLFT 127
Query: 83 CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
++ + + + G A H AA +G+ +++++LLA
Sbjct: 128 QPNI-ELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITI 159
H AAK G+L L+ L + +D +TAL+ A GH +++ L + +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK 197
G TALH+AA G ++++ LLA + +R +K
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
V++ I +SL + G+TALH AAR R + K LL A + I+ D G+T LH
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 97
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
AV V Q LI+ ++ G +PL +A R E ++ L+ NS ++N V+
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDD 156
Query: 265 TGETAL 270
G++AL
Sbjct: 157 LGKSAL 162
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 4/197 (2%)
Query: 94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE 153
R G A H+AA+ + K LL + A D T LH A V LI
Sbjct: 56 RTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 154 SSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV 213
++ + +G T L AAR +L+ L+ + + + D G++ALH A N++
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 173
Query: 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
L+K A+ +M + + +PL +A R+G + ++LL + N + + D A
Sbjct: 174 AVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIA 231
Query: 274 EKTGHSNLAALLREHGV 290
++ H ++ LL E+ +
Sbjct: 232 QERMHHDIVRLLDEYNL 248
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
V++ I +SL + G+TALH AAR R + K LL A + I+ D G+T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 96
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
AV V Q LI+ ++ G +PL +A R E ++ L+ NS ++N V+
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDD 155
Query: 265 TGETAL 270
G++AL
Sbjct: 156 LGKSAL 161
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE 153
R G A H+AA+ + K LL + A D T LH A V LI
Sbjct: 55 RTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 154 SSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV 213
++ + +G T L AAR +L+ L+ + + + D G++ALH A N++
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 172
Query: 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
L+K A+ +M + + +PL +A R+G + ++LL + N + + D A
Sbjct: 173 AVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIA 230
Query: 274 EKTGHSNLAALL 285
++ H ++ LL
Sbjct: 231 QERMHHDIVRLL 242
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 55 PKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKV 114
P N GET L++A+ G + V +++ + +D +K G+ H A GHL+V+++
Sbjct: 4 PFTNHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 115 LLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
LL + L T N + LH AA GHV+++ L+ +S
Sbjct: 62 LLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
G+T LH A+ G + ++ LL S ++ D G T LH A +++VV EL+ A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVV-ELLLQHKA 67
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA 283
VN + +SPLH A + G IV+LLL+ + N VN G +D + +L
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLL 126
Query: 284 LLREHGVESA 293
L ++ SA
Sbjct: 127 LPEKNESSSA 136
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITI 159
HIA+ +G + ++ LL + + D T LH A GH++V+ L++ +L+
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQ-HKALVNT 71
Query: 160 SRSNGKTALHSAARNGRLEVLKTLLA 185
+ + LH AA+NG ++++K LL+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLS 97
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G +PLH+A R+G +IV +LL +
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGA 59
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLRE 287
++N ++ G+TA D + G+ +LA +L++
Sbjct: 60 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + + + DK G T LH+A + ++E+V+ L+KA A VN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNA 63
Query: 228 VDTKGNSPLHIATRKGREQIVRLL 251
D G + I+ G E + +L
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEIL 87
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
L AA G + + L+ A + + +G T LH AAR G LE+++ LL A + + +
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKA 220
DK G+TA +++ N ++ + L KA
Sbjct: 65 -DKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD K ++G+ H+AA+EGHLE+++VLL
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + K+ + G T L++AA GH+++V ++K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKD------KDGYTPLHLAAREGHLEIVEVLLKAG- 58
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
AD + + G AF I+ G+ ++ ++L
Sbjct: 59 -ADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L+A ++ D T LH AA +GH+E++ L++A + +
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDK 66
Query: 163 NGKTALHSAARNGRLEVLKTL 183
GKTA + NG ++ + L
Sbjct: 67 FGKTAFDISIDNGNEDLAEIL 87
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AAR G+ + ++ +L A+ D G T LH+A ++E+V+ L+K A VN
Sbjct: 21 AARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGADVNATGN 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
G +PLH+A +IV +LL + ++N ++ G+TA D + G+ +LA +L++
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A VN D G++PLH+A G +IV +LL N
Sbjct: 15 GKKLLEAARAGQDDEV--RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
++N TG T L A H + +L +HG +
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L A ++ D T LH AAM GH+E++ L++ + + + +
Sbjct: 21 AARAGQDDEVRILTANGADVNAN-DYWGHTPLHLAAMLGHLEIVEVLLK-NGADVNATGN 78
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN---IEVVQEL 217
G+T LH AA LE+++ LL + + + DK G+TA +++ N E++Q+L
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
G T LH AA G LE+++ LL + + T G+T LH+A ++E+V+ L+K A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNA-TGNTGRTPLHLAAWADHLEIVEVLLK-HGA 104
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLL 251
VN D G + I+ G E + +L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 29 AARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD 88
AARAG DEV+ ILT + + G T L++AA GH+++V ++K + AD
Sbjct: 21 AARAGQDDEVR-ILTANGAD-----VNANDYWGHTPLHLAAMLGHLEIVEVLLK--NGAD 72
Query: 89 AGIKARNGFDAFHIAAKEGHLEVLKVLL 116
G H+AA HLE+++VLL
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLL 100
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
G H+AA GHLE+++VLL ++ T + T T LH AA H+E++ L++ +
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGN-TGRTPLHLAAWADHLEIVEVLLK-HGA 104
Query: 156 LITISRSNGKTALHSAARNGRLEVLKTL 183
+ GKTA + NG ++ + L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 19/159 (11%)
Query: 29 AARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD 88
AARAG DEV+ IL + L G + L++AA+YGH +++
Sbjct: 9 AARAGQDDEVR-ILMANGAPFTTDWL------GTSPLHLAAQYGHFSTTEVLLR------ 55
Query: 89 AGIK--ARNGFD--AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVE 144
AG+ AR D H+AA EGH +++VLL ++ D+ TALH A H E
Sbjct: 56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQE 114
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
V+ LI+ + + T S+ KTA + NG ++ + L
Sbjct: 115 VVELLIKYGADVHTQSKF-CKTAFDISIDNGNEDLAEIL 152
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L+A T D T+ LH AA GH L+ A S ++
Sbjct: 9 AARAGQDDEVRILMA--NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
+ +T LH AA G +++ LL + + + D TALH A + + EVV+ LIK
Sbjct: 67 D-RTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKY-G 123
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
A V+ + I+ G E + +L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 30/135 (22%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV + P + + + G SPLH+A + G +LL
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTTDWL---GTSPLHLAAQYGHFSTTEVLLRA--- 56
Query: 258 NLNGVNRTGETALD-----TAEKTGHSNLAALLREHGVE-SAKNMKPQNNPARELKQTVS 311
GV+R T +D A GH+N+ +L +HG + +AK+M LK T
Sbjct: 57 ---GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM---------LKMTA- 103
Query: 312 DIKHEVHYQLEHTRQ 326
+H+ EH Q
Sbjct: 104 -----LHWATEHNHQ 113
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A V D G++PLH+A R G ++V+LLL +
Sbjct: 7 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGA 63
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLR 286
++N ++ G+TA D + G+ +LA +L+
Sbjct: 64 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + +A + DK G T LH+A + ++EVV+ L++A A VN
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVNA 67
Query: 228 VDTKGNSPLHIATRKGREQIVRLL 251
D G + I+ G E + +L
Sbjct: 68 QDKFGKTAFDISIDNGNEDLAEIL 91
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
AA G + + L+ A + + NG T LH AARNG LEV+K LL A + + + DK
Sbjct: 13 AARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ-DK 70
Query: 197 KGQTALHMAVKGQNIEVVQ 215
G+TA +++ N ++ +
Sbjct: 71 FGKTAFDISIDNGNEDLAE 89
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L+A ++A D +T LH AA GH+EV+ L+EA + +
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDK 70
Query: 163 NGKTALHSAARNGRLEVLKTL 183
GKTA + NG ++ + L
Sbjct: 71 FGKTAFDISIDNGNEDLAEIL 91
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
AD K +NG H+AA+ GHLEV+K+LL
Sbjct: 30 ADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + K+ ++G T L++AA GH+++V +++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKD------KNGSTPLHLAARNGHLEVVKLLLEAG- 62
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
AD + + G AF I+ G+ ++ ++L
Sbjct: 63 -ADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 239 ATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
A R G++ VR+L+AN ++ ++ G T L A + GH + LL E G +
Sbjct: 13 AARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSV 189
+ L AA + V+ L+ L++ E + + G+TALH AA LE L+ A + V
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 190 IAIRTDK--KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT-------------KGNS 234
T + +GQTALH+AV QN+ +V+ L+ A ASV+ T G
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALL-ARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 235 PLHIATRKGREQIVRLLL 252
PL A G E+IVRLL+
Sbjct: 124 PLSFAACVGSEEIVRLLI 141
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
AA+ ++ L LL + + G+TALH+A N+E L++A P V T
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 231 ----KGNSPLHIATRKGREQIVRLLLANSET------------NLNGVNRTGETALDTAE 274
+G + LHIA +VR LLA + + + GE L A
Sbjct: 70 SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129
Query: 275 KTGHSNLAALLREHGVE 291
G + LL EHG +
Sbjct: 130 CVGSEEIVRLLIEHGAD 146
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 62 ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPE 121
E+ L +AA+ V +++++K ++ + + G A HIAA +LE VL+ PE
Sbjct: 4 ESPLLLAAKENDVQALSKLLK-FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 122 L---AMTVDLT-NTTALHTAAMQGHVEVLNFLI--------EAESSLITISRSN----GK 165
L MT +L TALH A + +V ++ L+ A S+ N G+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN 210
L AA G E+++ L+ + I + D G T LH+ + N
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQ-DSLGNTVLHILILQPN 166
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
V++ I +SL + G TALH AA R + K LL A + I+ D G+T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 96
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
AV V Q LI+ ++ G +PL +A R E ++ L+ NS ++N V+
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDD 155
Query: 265 TGETAL 270
G++AL
Sbjct: 156 LGKSAL 161
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 86/214 (40%), Gaps = 16/214 (7%)
Query: 88 DAGIKARNGFDAFHIAA-KEGHLE------------VLKVLLAVYPELAMTVDLTNTTAL 134
D ++ +GF IA+ G LE V+ + L D T TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT 194
H AA + L+EA S+ I + G+T LH+A V + L+ +
Sbjct: 62 HLAAAYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
G T L +A + ++++LI + A VN VD G S LH A +LL N
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
N + N ET L A + G A +L +H
Sbjct: 180 G-ANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 72 GHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV---DL 128
G DLV +I Y++ D + G A H A GH E++K L+ + + V D
Sbjct: 48 GEFDLVQRII--YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV----QFGVNVNAADS 101
Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTA 167
T LH AA +V+V FL+E+ +++ ++ S+ +TA
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 106 EGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGK 165
EG ++++ ++ + ++ D TALH A GH E++ FL++ + + + S+G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGW 104
Query: 166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
T LH AA ++V K L+ + + + T QTA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
+ +G TALH AV + E+V+ L++ +VN D+ G +PLH A Q+ + L+ +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 255 SETNLNGVNRTGETALDTAEKT--GHSNLAALLREHGVE 291
+TA D E+ G++ + L +GV+
Sbjct: 126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL--YGVQ 162
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
L ++++G +++ +I E ++ G TALH+A G E++K L+ V
Sbjct: 41 LLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNA 98
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKA 220
D G T LH A N++V + L+++
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 72 GHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV---DL 128
G DLV +I Y++ D + G A H A GH E++K L+ + + V D
Sbjct: 48 GEFDLVQRII--YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV----QFGVNVNAADS 101
Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTA 167
T LH AA +V+V FL+E+ +++ ++ S+ +TA
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 106 EGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGK 165
EG ++++ ++ + ++ D TALH A GH E++ FL++ + + + S+G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGW 104
Query: 166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
T LH AA ++V K L+ + + + T QTA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
+ +G TALH AV + E+V+ L++ +VN D+ G +PLH A Q+ + L+ +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 255 SETNLNGVNRTGETALDTAEKT--GHSNLAALLREHGVE 291
+TA D E+ G++ + L +GV+
Sbjct: 126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL--YGVQ 162
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 123 AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
M V L ++++G +++ +I E ++ G TALH+A G E++K
Sbjct: 30 GMRVKFNPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA 220
L+ V D G T LH A N++V + L+++
Sbjct: 89 LVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 163 NGKTALHSAARN-GRLEVLKTLL------AADSVIAIRTDK---KGQTALHMAVKGQNIE 212
NG TAL A N GR +V L D A R D KG+TALH A + N
Sbjct: 234 NGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXP 293
Query: 213 VVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDT 272
+V+ L+ + ++ + D G +P+ +A ++GR ++V L+ + + V+ T TA
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS-VEAVDATDHTARQL 352
Query: 273 AEKTGHSNLAALL 285
A+ H N+ +
Sbjct: 353 AQANNHHNIVDIF 365
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 94 RNGFDAFHIAA-KEGHLEVLKVLLAVYPELAMTVDLTNT-----------TALHTAAMQG 141
RNG A I A EG +V L V E VD TALH AA
Sbjct: 233 RNGXTALXIVAHNEGRDQVASAKLLV--EKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290
Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL-AADSVIAIRTDKKGQT 200
+ ++ +L+ + S +GKT + AA+ GR+EV+ L+ SV A+ D T
Sbjct: 291 NXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV--DATDHT 348
Query: 201 ALHMAVKGQNIEVVQELIKAEP 222
A +A + +V + P
Sbjct: 349 ARQLAQANNHHNIVDIFDRCRP 370
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 11 KKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAE 70
+K +++ G+ TALH AA+ N VK L G E+ K+ KQ++ G+T + +AA+
Sbjct: 271 RKDSEKYKGR---TALHYAAQVSNXPIVK-YLVG-EKGSNKD---KQDEDGKTPIXLAAQ 322
Query: 71 YGHVDLVAEMIKCYDLADAGIKARNGFD--AFHIAAKEGHLEVLKVLLAVYPE 121
G +++V +I+ A ++A + D A +A H ++ + PE
Sbjct: 323 EGRIEVVXYLIQ----QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
G+ L A GQ+ EV ++ A A V D G++PLH+A R G ++V+LLL +
Sbjct: 25 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGA 81
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLR 286
++ ++ G+TA D + G+ +LA +L+
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
L AA G + + L+ A + + NG T LH AARNG LEV+K LL A + + +
Sbjct: 28 LLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 194 TDKKGQTALHMAVKGQNIEVVQ 215
DK G+TA +++ N ++ +
Sbjct: 87 -DKFGKTAFDISIDNGNEDLAE 107
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
L AAR G+ + ++ L+A + +A + DK G T LH+A + ++EVV+ L++A A V
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXA 85
Query: 228 VDTKGNSPLHIATRKGREQIVRLL 251
D G + I+ G E + +L
Sbjct: 86 QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
AA+ G + +++L+A ++A D +T LH AA GH+EV+ L+EA + + +
Sbjct: 31 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 163 NGKTALHSAARNGRLEVLKTL 183
GKTA + NG ++ + L
Sbjct: 90 -GKTAFDISIDNGNEDLAEIL 109
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 53 LLPKQNQSGET---ALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHL 109
L+P+ + G L AA G D V I + AD K +NG H+AA+ GHL
Sbjct: 13 LVPRGSHMGSDLGKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHL 70
Query: 110 EVLKVLL 116
EV+K+LL
Sbjct: 71 EVVKLLL 77
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
L AARAG DEV+ ++ + K+ ++G T L++AA GH+++V +++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKD------KNGSTPLHLAARNGHLEVVKLLLEAG- 80
Query: 86 LADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
AD + + G AF I+ G+ ++ ++L
Sbjct: 81 -ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 239 ATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
A R G++ VR+L+AN ++ ++ G T L A + GH + LL E G +
Sbjct: 31 AARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
D G + +H A + ++ ++ L++ A VN +D+ G+ P+H+A R+G +V L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL--A 127
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
E++L+ + +G T L+ A + G NL +L+ H
Sbjct: 128 PESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 15/160 (9%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQ--NQSGETALYVAAEYGHVDLVAEMIKC 83
L AA G++ EV+ +L +EL+ N+ G+TAL V +G + E++K
Sbjct: 12 LSGAAARGDVQEVRRLLH-------RELVHPDALNRFGKTALQVMM-FGSPAVALELLKQ 63
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
A ++ +G H AA+ G L+ LKVL+ ++ +D T + +H A +GH
Sbjct: 64 G--ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHS 120
Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
V++FL A S + ++G T L A + G ++ L
Sbjct: 121 SVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
D G + +H A + ++ ++ L++ A VN +D+ G+ P+H+A R+G +V L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL--A 129
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
E++L+ + +G T L+ A + G NL +L+ H
Sbjct: 130 PESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 15/160 (9%)
Query: 26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQ--NQSGETALYVAAEYGHVDLVAEMIKC 83
L AA G++ EV+ +L +EL+ N+ G+TAL V +G + E++K
Sbjct: 14 LSGAAARGDVQEVRRLLH-------RELVHPDALNRFGKTALQVMM-FGSPAVALELLKQ 65
Query: 84 YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
A ++ +G H AA+ G L+ LKVL+ ++ +D T + +H A +GH
Sbjct: 66 G--ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHS 122
Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
V++FL A S + ++G T L A + G ++ L
Sbjct: 123 SVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AAD 187
++ ++H A QG ++ L + +L+ G T L A+ G +E ++ LL AD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 188 SVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQI 247
I K+ ++AL +A G ++V L++ + +N+ D G +PL A R +
Sbjct: 62 PHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKC 117
Query: 248 VRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
V LLA +L +G T +D A G+ + ++ H
Sbjct: 118 VEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 43/185 (23%)
Query: 22 DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
D ++H A G LD++K+ L K L+ K ++ G T L A+ +G ++ V ++
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLR-----KGDNLVNKPDERGFTPLIWASAFGEIETVRFLL 56
Query: 82 KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
+ G D HI AKE +AL A+ G
Sbjct: 57 EW------------GADP-HILAKE-----------------------RESALSLASTGG 80
Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
+ +++ L+E + I I NG T L A R ++ ++ LLA + + D G T
Sbjct: 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTP 138
Query: 202 LHMAV 206
+ +AV
Sbjct: 139 MDLAV 143
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 3/166 (1%)
Query: 123 AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
A + D T T LH A + V L+ ++ + +G T L AAR +++
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK 242
L+ AD+ I D G+TALH A N E V L+ A+ + D K +PL +A R+
Sbjct: 137 LITADADINA-ADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAARE 194
Query: 243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
G + + LL N N + D A + H ++ LL EH
Sbjct: 195 GSYEASKALLDNF-ANREITDHMDRLPRDVASERLHHDIVRLLDEH 239
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH 237
+V+ LLA + + DK G+T+LH+A + + + L+ A A N D G +PLH
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLH 89
Query: 238 IATRKGREQIVRLLLANSETNLNGVNRTGETAL 270
A + ++LL N TNLN G T L
Sbjct: 90 AAVAADAMGVFQILLRNRATNLNARMHDGTTPL 122
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
+V++ L+ + L G+T+LH AAR R + K LL A A D G+T LH
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLH 89
Query: 204 MAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVN 263
AV + V Q L++ ++N G +PL +A R E +V L+ ++ ++N +
Sbjct: 90 AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT-ADADINAAD 148
Query: 264 RTGETAL 270
+G+TAL
Sbjct: 149 NSGKTAL 155
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
D N T L A M G ++ L+E L G TAL A +N RL + + LL+
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ 246
S + + D G+T L ++ E+ L++ A+VN + +G +PL +A++ GR +
Sbjct: 91 GSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSE 148
Query: 247 IVRLLL 252
IV+ LL
Sbjct: 149 IVKKLL 154
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
D +G TAL AVK + + ++L+ ++ ++VN D G +PL + G ++ LL +
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-SAKNM 296
N+N N GET L A K G S + L E G + SA+++
Sbjct: 124 G-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN--GFDAFHIAAKEGHLEVLKV 114
+N GET L VA++YG ++V ++++ A I AR+ G A A G EV+K+
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLEL----GADISARDLTGLTAEASARIFGRQEVIKI 185
Query: 115 LLAV 118
V
Sbjct: 186 FTEV 189
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 103/254 (40%), Gaps = 36/254 (14%)
Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
DTALH A + + D L G E L QN G+TAL++AA G V ++
Sbjct: 10 DTALHLAVIHQH-EPFLDFLLGFSAGH--EYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 83 CYDLADAGI--KARNGFDAFHIAAKEGHLEVLKVLLAVYPE---------LAMTVDLTNT 131
A AG+ R G A H+A + VLL P L + D T
Sbjct: 67 ----AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 132 TALHTAAMQGHVEVLN----------FLIEAESSLITISRSNGKTALHSAARNGRLEVLK 181
T+ AA+ N +EAE+ +G T LH A + E+++
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-------DGHTPLHVAVIHKDAEMVR 175
Query: 182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241
L A + + G+T LH+AV+ Q V++ L+KA A G +PL A
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALL 234
Query: 242 KGREQIVRLLLANS 255
+ + RLL A+
Sbjct: 235 RPNPILARLLRAHG 248
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 103/254 (40%), Gaps = 36/254 (14%)
Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
DTALH A + + D L G E L QN G+TAL++AA G V ++
Sbjct: 10 DTALHLAVIHQH-EPFLDFLLGFSAGH--EYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 83 CYDLADAGI--KARNGFDAFHIAAKEGHLEVLKVLLAVYPE---------LAMTVDLTNT 131
A AG+ R G A H+A + VLL P L + D T
Sbjct: 67 ----AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 132 TALHTAAMQGHVEVLN----------FLIEAESSLITISRSNGKTALHSAARNGRLEVLK 181
T+ AA+ N +EAE+ +G T LH A + E+++
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-------DGHTPLHVAVIHKDAEMVR 175
Query: 182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241
L A + + G+T LH+AV+ Q V++ L+KA A G +PL A
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALL 234
Query: 242 KGREQIVRLLLANS 255
+ + RLL A+
Sbjct: 235 RPNPILARLLRAHG 248
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 7/161 (4%)
Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AAD 187
++ ++H A QG ++ L + +L+ G T L A+ G +E ++ LL AD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 188 SVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQI 247
I K+ ++AL +A G ++V L++ + +N+ D G +PL A +
Sbjct: 62 PHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVHGNHVKC 117
Query: 248 VRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
V LLA +L +G T +D A G+ + ++ H
Sbjct: 118 VEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 43/185 (23%)
Query: 22 DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
D ++H A G LD++K+ L K L+ K ++ G T L A+ +G ++ V ++
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLR-----KGDNLVNKPDERGFTPLIWASAFGEIETVRFLL 56
Query: 82 KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
+ G D HI AKE +AL A+ G
Sbjct: 57 EW------------GADP-HILAKE-----------------------RESALSLASTGG 80
Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
+ +++ L+E + I I NG T L A ++ ++ LLA + + D G T
Sbjct: 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTP 138
Query: 202 LHMAV 206
+ +AV
Sbjct: 139 MDLAV 143
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
VD TAL A G + + L EA + L G TALH AA R EV++ L+
Sbjct: 73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE 245
+ I + D++G TAL +A +E++K P KGN P+ R G E
Sbjct: 133 LGADIEVE-DERGLTALELA---------REILKTTP--------KGN-PMQFGRRIGLE 173
Query: 246 QIVRLL 251
+++ +L
Sbjct: 174 KVINVL 179
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 7/202 (3%)
Query: 56 KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGF--DAFHIAAKEGHLEVLK 113
+ ++ G+T L++A G++ V ++ + + N H+A V++
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 114 VLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE--AESSLITISRS-NGKTALHS 170
+L+ M +D TA H A L L++ A +L +R+ +G TALH
Sbjct: 64 LLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
A E ++ LL + I K G++ L AV+ ++ +VQ L++ A+VN
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMY 181
Query: 231 KGNSPLHIATRKGREQIVRLLL 252
G+S LH A+ +G +VR L+
Sbjct: 182 SGSSALHSASGRGLLPLVRTLV 203
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 44/213 (20%)
Query: 122 LAMTVDLTNTTALHTAAMQGHV-------------------------------------E 144
+A D T LH A +QG++
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSVIAIRT-DKKGQTA 201
V+ L+ A +S + + R +G+TA H A + L+ LL AA + + + G TA
Sbjct: 61 VVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTK-GNSPLHIATRKGREQIVRLLLANSETNLN 260
LH+AV + E VQ L++ A ++ VD K G SPL A +V+LLL + N+N
Sbjct: 120 LHVAVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVN 177
Query: 261 GVNRTGETALDTAEKTGHSNLAALLREHGVESA 293
+G +AL +A G L L G +S+
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK 219
+R N L AA G LEV++ + + + + +++G TALH A+ G N +V LI
Sbjct: 17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLIT 75
Query: 220 AEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE--KTG 277
A A+VN D+ G +PLH A I L+ + G TA + + + G
Sbjct: 76 AG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG 134
Query: 278 HSNLAALL 285
+++ A L
Sbjct: 135 YADCATYL 142
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
TALH A + +++FLI A ++ + S+G T LH AA + L+ + I
Sbjct: 56 TALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114
Query: 192 IRTDKKGQTAL 202
T G TA
Sbjct: 115 ATTLSDGATAF 125
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
VD TAL A G + + L EA + L G TALH AA R EV++ L+
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE 245
+ I + D++G TAL +A +E++K P KGN P+ R G E
Sbjct: 132 LGADIEVE-DERGLTALELA---------REILKTTP--------KGN-PMQFGRRIGLE 172
Query: 246 QIVRLL 251
+++ +L
Sbjct: 173 KVINVL 178
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 91 IKARNGFDAFHIAAKEGHLEVLKVLLAVYP-ELAMTVDLTNTTALHTAAMQGHVEVLNFL 149
I+A N + AF +AA+ GHL VL L + P E+ + N A AA GH+ VLN L
Sbjct: 124 IQAEN-YQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAENGHLHVLNRL 182
Query: 150 IE 151
E
Sbjct: 183 CE 184
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 114 VLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE-AESSLITISRSNGKTALHSAA 172
LL E+ + N A AA GH+ VLN L E A + + ++ A AA
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAA 171
Query: 173 RNGRLEVLKTL 183
NG L VL L
Sbjct: 172 ENGHLHVLNRL 182
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
D G + +H A + ++ ++ L++ A VN+ D G P+H+A ++G +V L A
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA- 128
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
E++L+ + G T L+ A + G +L +L+ H V
Sbjct: 129 -ESDLHRRDARGLTPLELALQRGAQDLVDILQGHMV 163
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
D + T+ +H AA G ++ L L+E + + + G +H A + G V+ + LAA
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAA 128
Query: 187 DSVIAIRTDKKGQTALHMAVK 207
+S + R D +G T L +A++
Sbjct: 129 ESDLH-RRDARGLTPLELALQ 148
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
Q+ SG + ++ AA G +D + +++ AD + G H+A +EGH V+ L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHG--ADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 117 A 117
A
Sbjct: 128 A 128
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
D G + +H A + ++ ++ L++ A VN+ D G P+H+A ++G +V L A
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA- 122
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
E++L+ + G T L+ A + G +L +L+ H
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
D + T+ +H AA G ++ L L+E + + + G +H A + G V+ + LAA
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAA 122
Query: 187 DSVIAIRTDKKGQTALHMAVK 207
+S + R D +G T L +A++
Sbjct: 123 ESDLH-RRDARGLTPLELALQ 142
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
Q+ SG + ++ AA G +D + +++ AD + G H+A +EGH V+ L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHG--ADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 117 A 117
A
Sbjct: 122 A 122
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 165 KTALHSAARN---GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
+TALH A R+ L ++ L+ + +T KG TALH N E ++ L++ +
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLL 251
AS+ + + G +PL IA R E LL
Sbjct: 229 -ASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 130 NTTALHTAAM---QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
+ TALH A + + +++FL++ +L + G TALH E LK LL
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLRG 227
Query: 187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
+ I I ++ G+T L +A + ++ E +EL+
Sbjct: 228 KASIEI-ANESGETPLDIAKRLKH-EHCEELL 257
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 97/242 (40%), Gaps = 60/242 (24%)
Query: 20 KRDDT---ALHSAARAGNLDEVKDIL-TGTEEAKLKELLPKQNQSGETALYVAAEYGHVD 75
K DD +H AAR G DEV+ ++ TG QN+ G TAL++A ++G VD
Sbjct: 15 KSDDENXEKIHVAARKGQTDEVRRLIETGVSPTI-------QNRFGCTALHLACKFGCVD 67
Query: 76 ---LVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTT 132
+A + + + L +G H+A N T
Sbjct: 68 TAKYLASVGEVHSLW-------HGQKPIHLAVX-----------------------ANKT 97
Query: 133 ALHTAAMQGHVE-------VLNFLIEAESSLIT--ISRSNGKTALHSAARNGR--LEVLK 181
L A ++G E +LN E E + I + G+TALH G LE +K
Sbjct: 98 DLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIK 157
Query: 182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPAS----VNMVDTKGNSPLH 237
L+ + + DK +T L A + +N E + P+ ++ + +GNS LH
Sbjct: 158 ILVQLGASPTAK-DKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLH 216
Query: 238 IA 239
A
Sbjct: 217 WA 218
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 202 LHMAVKGQN---IEVVQELIKAEPASVNMVDTK---GNSPLHIATRKGREQIVRLLLANS 255
LH+AVK N + +V +I+ + +D K GN+ LH A + ++LLL
Sbjct: 194 LHLAVKVANQASLPLVDFIIQ----NGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KG 248
Query: 256 ETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
+ VN GETALD A K H LL +
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 134 LHTA---AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVI 190
LH A A Q + +++F+I+ L ++G TALH AA + + LK LL +++
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 191 AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHI 238
++ G+TAL +A K + E + L +A+ + PLH+
Sbjct: 253 GT-VNEAGETALDIARKKHHKECEELLEQAQAGTFAF-------PLHV 292
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 134 LHTA---AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVI 190
LH A A Q + +++F+I+ L ++G TALH AA + + LK LL +++
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Query: 191 AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHI 238
++ G+TAL +A K + E + L +A+ + PLH+
Sbjct: 234 GT-VNEAGETALDIARKKHHKECEELLEQAQAGTFAF-------PLHV 273
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 202 LHMAVKGQNIEVVQ--ELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNL 259
LH+AVK N + + I ++ GN+ LH A + ++LLL +
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-V 233
Query: 260 NGVNRTGETALDTAEKTGHSNLAALLRE 287
VN GETALD A K H LL +
Sbjct: 234 GTVNEAGETALDIARKKHHKECEELLEQ 261
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
G D A + G+LDEVKD + E+ + + G L+ AA+ G ++++
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN------RTLEGGRKPLHYAADCGQLEILE 57
Query: 79 EMIKCYDLADAGIKARNGFDAFHI-----AAKEGHLEVLKVLLA 117
++ L A I N D HI A EGH+ +K+LL+
Sbjct: 58 FLL----LKGADI---NAPDKHHITPLLSAVYEGHVSCVKLLLS 94
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
A+K +++ V++ + A+ VN G PLH A G+ +I+ LL ++N ++
Sbjct: 14 ALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDK 71
Query: 265 TGETALDTAEKTGHSNLAALLREHGVE 291
T L +A GH + LL G +
Sbjct: 72 HHITPLLSAVYEGHVSCVKLLLSKGAD 98
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
A+VN D+ G PLH AT G + L L +L + G L A +T ++++
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIV 317
Query: 283 ALLR 286
LLR
Sbjct: 318 TLLR 321
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
A+VN D+ G PLH AT G + L L +L + G L A +T ++++
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIV 317
Query: 283 ALLR 286
LLR
Sbjct: 318 TLLR 321
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
A+VN D+ G PLH AT G + L L +L + G L A +T ++++
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIV 317
Query: 283 ALLR 286
LLR
Sbjct: 318 TLLR 321
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
D A + G+LDEVKD + E+ + + G L+ AA+ G ++++ ++
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVN------RTLEGGRKPLHYAADCGQLEILEFLL- 55
Query: 83 CYDLADAGIKARNGFDAFHI-----AAKEGHLEVLKVLLA 117
L A I N D HI A EGH+ +K+LL+
Sbjct: 56 ---LKGADI---NAPDKHHITPLLSAVYEGHVSCVKLLLS 89
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
A+K +++ V++ + A+ VN G PLH A G+ +I+ LL ++N ++
Sbjct: 9 ALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDK 66
Query: 265 TGETALDTAEKTGHSNLAALLREHGVE 291
T L +A GH + LL G +
Sbjct: 67 HHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITI 159
F A K G L+ +K +A ++ T++ LH AA G +E+L FL+ + + I
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLL-LKGADINA 63
Query: 160 SRSNGKTALHSAARNGRLEVLKTLLA 185
+ T L SA G + +K LL+
Sbjct: 64 PDKHHITPLLSAVYEGHVSCVKLLLS 89
>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|B Chain B, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 98
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 291 ESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
E+ +KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 9 EAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 58
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 291 ESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
E+ +KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 9 EAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 58
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 291 ESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
E+ +KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 15 EAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 64
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 164 GKTALHSAA---RNGRLEVLKTLL----AADS----VIAIRTDK--KGQTALHMAVKGQN 210
GKT L A NG+ + + LL DS V A TD KGQTALH+A++ +N
Sbjct: 54 GKTCLLKAXLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113
Query: 211 IEVVQELIKAEP---ASVN---MVDTKGNS-------PLHIATRKGREQIVRLLLANS-- 255
+V L++ A+ N TKG PL +A + IV+ LL NS
Sbjct: 114 XTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173
Query: 256 ETNLNGVNRTGETAL 270
+++ + G T L
Sbjct: 174 PADISARDSVGNTVL 188
>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|D Chain D, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 106
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 290 VESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
V +KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 16 VPRGSEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 66
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
+G T L AAR +L+ L+ + + + D G++ALH A N++ L+K
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLK-NG 71
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
A+ +M + K +PL +A R+G + ++LL + N + + D A++ H ++
Sbjct: 72 ANKDMQNNKEETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIV 130
Query: 283 ALLRE 287
LL E
Sbjct: 131 RLLDE 135
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 291 ESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
E+ +KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 16 EAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 65
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK------------GQTALHMAVKGQNI 211
G +ALH A L+ +K L+ + + +R + G+ L +A +
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 212 EVVQELIKA--EPASVNMVDTKGNSPLH 237
+VV L++ +PAS+ D+ GN+ LH
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLH 177
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 296 MKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
+KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 56
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 296 MKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
+KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 56
>pdb|3A24|A Chain A, Crystal Structure Of Bt1871 Retaining Glycosidase
pdb|3A24|B Chain B, Crystal Structure Of Bt1871 Retaining Glycosidase
Length = 641
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 245 EQIVRLLLANSETNLNGVNRTGETALDTAEKT---GHSNLAALLREHGVESAKNMKPQNN 301
E L L+ SE G NR ++T GH+ L L++EH AK KP+N
Sbjct: 192 ENYPGLYLSASE----GANRLSSMHAPYPKRTVQGGHNQLQMLVKEHEDYIAKVDKPRNF 247
Query: 302 PARELKQTVSD 312
P R T +D
Sbjct: 248 PWRIAVVTTTD 258
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 296 MKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
+KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 56
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 296 MKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
+KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 56
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK------------GQTALHMAVKGQNI 211
G +ALH A L+ +K L+ + + R + G+ L +A +
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 212 EVVQELIKA--EPASVNMVDTKGNSPLH 237
+VV L++ +PAS+ D++GN+ LH
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVLH 182
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 296 MKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
+KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 56
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 296 MKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHK 340
+KP+ P + VSD E+ ++++ T RR + AKR K
Sbjct: 2 VKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 46
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK------------GQTALHMAVKGQNI 211
G +ALH A L+ +K L+ + + +R + G+ L +A +
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 212 EVVQELIKA--EPASVNMVDTKGNSPLH 237
+VV L++ +PAS+ D+ GN+ LH
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLH 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,113,587
Number of Sequences: 62578
Number of extensions: 472500
Number of successful extensions: 2465
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 459
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)