Query 009344
Match_columns 537
No_of_seqs 579 out of 3171
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 03:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 3.2E-42 1.1E-46 336.2 30.6 263 21-295 4-282 (285)
2 1n11_A Ankyrin; clathrin, BAND 100.0 7.4E-42 2.5E-46 355.6 32.7 281 13-304 71-382 (437)
3 1n11_A Ankyrin; clathrin, BAND 100.0 1.5E-41 5.1E-46 353.3 32.6 280 12-304 4-283 (437)
4 4g8k_A 2-5A-dependent ribonucl 100.0 5.6E-41 1.9E-45 336.7 28.6 259 19-292 22-327 (337)
5 3d9h_A CDNA FLJ77766, highly s 100.0 4.1E-41 1.4E-45 329.6 23.4 267 15-292 8-280 (285)
6 2fo1_E LIN-12 protein; beta-ba 100.0 3.6E-41 1.2E-45 343.0 19.5 264 16-292 88-372 (373)
7 3utm_A Tankyrase-1; tankyrase, 100.0 1.2E-39 4.3E-44 327.9 27.7 282 13-306 15-320 (351)
8 2xai_A ASB-9, ankyrin repeat a 100.0 2.3E-40 7.8E-45 320.0 20.9 250 21-286 2-258 (261)
9 3ljn_A Hypothetical protein; a 100.0 2.3E-40 8E-45 335.9 18.1 271 12-295 10-318 (364)
10 1yyh_A HN1;, notch 1, ankyrin 100.0 7.8E-39 2.7E-43 307.8 22.0 245 14-290 2-247 (253)
11 1oy3_D Transcription factor in 100.0 7.5E-39 2.6E-43 312.3 21.6 256 15-277 2-269 (282)
12 3utm_A Tankyrase-1; tankyrase, 100.0 1.4E-37 4.7E-42 313.0 31.3 264 12-292 48-335 (351)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 1.2E-38 4.2E-43 306.4 21.9 229 54-307 3-231 (253)
14 1k1a_A B-cell lymphoma 3-encod 100.0 2.1E-38 7.3E-43 301.8 22.0 234 54-290 2-240 (241)
15 1wdy_A 2-5A-dependent ribonucl 100.0 2.4E-37 8.3E-42 301.6 29.5 239 15-264 31-284 (285)
16 3b7b_A Euchromatic histone-lys 100.0 1.9E-37 6.5E-42 294.7 25.7 223 57-285 7-229 (237)
17 3b7b_A Euchromatic histone-lys 100.0 3E-37 1E-41 293.3 26.2 230 13-253 2-231 (237)
18 1k1a_A B-cell lymphoma 3-encod 100.0 8.4E-38 2.9E-42 297.7 20.5 233 16-255 3-239 (241)
19 3ljn_A Hypothetical protein; a 100.0 1.9E-37 6.4E-42 314.5 22.9 234 54-296 13-274 (364)
20 3d9h_A CDNA FLJ77766, highly s 100.0 3.3E-37 1.1E-41 301.9 23.7 230 15-260 52-281 (285)
21 3aji_A 26S proteasome non-ATPa 100.0 4.9E-37 1.7E-41 290.6 24.0 228 19-291 3-230 (231)
22 3aji_A 26S proteasome non-ATPa 100.0 6.4E-37 2.2E-41 289.8 24.4 209 95-307 5-213 (231)
23 2xai_A ASB-9, ankyrin repeat a 100.0 8.9E-37 3E-41 294.8 25.3 221 60-291 2-222 (261)
24 2dzn_A Probable 26S proteasome 100.0 2.7E-36 9.2E-41 284.8 23.3 212 22-275 2-217 (228)
25 3eu9_A Huntingtin-interacting 100.0 5.8E-36 2E-40 284.3 25.0 232 55-292 3-236 (240)
26 2dzn_A Probable 26S proteasome 100.0 4.5E-36 1.5E-40 283.3 23.3 209 96-306 2-215 (228)
27 1s70_B 130 kDa myosin-binding 100.0 4.9E-37 1.7E-41 302.4 16.1 250 18-286 36-285 (299)
28 3kea_A K1L; tropism, ANK repea 100.0 3.9E-36 1.3E-40 294.2 21.9 242 30-295 7-250 (285)
29 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-36 8.2E-41 307.3 20.3 232 14-255 116-369 (373)
30 1oy3_D Transcription factor in 100.0 5.2E-36 1.8E-40 292.1 20.7 250 54-306 2-265 (282)
31 4b93_B Ankyrin repeat domain-c 100.0 1.2E-36 4.2E-41 294.8 15.3 220 18-243 7-229 (269)
32 4g8k_A 2-5A-dependent ribonucl 100.0 1.7E-35 5.7E-40 296.9 23.3 232 58-293 22-300 (337)
33 3eu9_A Huntingtin-interacting 100.0 3.5E-35 1.2E-39 278.9 24.4 229 16-255 3-233 (240)
34 4b93_B Ankyrin repeat domain-c 100.0 1.8E-36 6.2E-41 293.6 14.1 230 55-289 5-242 (269)
35 2f8y_A Notch homolog 1, transl 100.0 4.9E-35 1.7E-39 275.3 21.0 215 72-292 2-217 (223)
36 2f8y_A Notch homolog 1, transl 100.0 1.2E-34 4.1E-39 272.6 21.1 213 33-255 2-214 (223)
37 3kea_A K1L; tropism, ANK repea 100.0 8.4E-35 2.9E-39 284.7 17.3 228 14-264 23-252 (285)
38 1s70_B 130 kDa myosin-binding 100.0 3.6E-34 1.2E-38 281.9 17.3 267 27-306 3-272 (299)
39 1sw6_A Regulatory protein SWI6 100.0 2.6E-34 8.8E-39 286.9 11.5 249 10-277 40-327 (327)
40 1ikn_D Protein (I-kappa-B-alph 100.0 3.5E-34 1.2E-38 272.2 11.2 222 16-273 2-226 (236)
41 3hra_A Ankyrin repeat family p 100.0 5.1E-32 1.7E-36 250.3 23.3 192 96-289 5-201 (201)
42 2rfa_A Transient receptor pote 100.0 2.9E-32 1E-36 258.0 22.2 210 60-295 2-226 (232)
43 1ikn_D Protein (I-kappa-B-alph 100.0 1.8E-33 6.3E-38 267.2 13.3 186 13-205 36-226 (236)
44 2rfa_A Transient receptor pote 100.0 4.4E-32 1.5E-36 256.7 22.6 187 96-306 3-204 (232)
45 3hra_A Ankyrin repeat family p 100.0 1.3E-31 4.5E-36 247.5 23.6 194 59-255 3-201 (201)
46 2etb_A Transient receptor pote 100.0 7.5E-32 2.6E-36 259.3 16.9 208 61-296 2-251 (256)
47 1sw6_A Regulatory protein SWI6 100.0 9.5E-33 3.2E-37 275.6 8.7 258 20-304 21-321 (327)
48 2pnn_A Transient receptor pote 100.0 1.5E-31 5E-36 259.9 15.3 214 54-293 6-261 (273)
49 2pnn_A Transient receptor pote 100.0 6.6E-32 2.3E-36 262.3 11.6 231 14-269 5-270 (273)
50 2etb_A Transient receptor pote 100.0 2.9E-31 9.9E-36 255.2 15.3 207 21-255 1-244 (256)
51 4gpm_A Engineered protein OR26 100.0 5.6E-30 1.9E-34 229.6 19.9 158 132-293 6-163 (169)
52 3jxi_A Vanilloid receptor-rela 100.0 1.2E-30 4.2E-35 251.3 14.5 133 160-295 89-254 (260)
53 4gpm_A Engineered protein OR26 100.0 1.9E-29 6.4E-34 226.2 19.2 158 24-191 6-163 (169)
54 3jxi_A Vanilloid receptor-rela 100.0 3.4E-30 1.1E-34 248.3 12.3 212 19-255 2-248 (260)
55 4hbd_A KN motif and ankyrin re 100.0 3.5E-29 1.2E-33 243.5 14.1 191 97-289 77-273 (276)
56 4hbd_A KN motif and ankyrin re 100.0 6.7E-29 2.3E-33 241.5 15.0 195 60-256 75-274 (276)
57 3v30_A DNA-binding protein rfx 100.0 5.2E-28 1.8E-32 217.7 17.6 160 132-294 4-163 (172)
58 3v30_A DNA-binding protein rfx 100.0 6.4E-28 2.2E-32 217.1 17.8 170 96-269 2-171 (172)
59 2aja_A Ankyrin repeat family p 100.0 5.3E-31 1.8E-35 266.1 -3.2 157 21-189 91-250 (376)
60 3v31_A Ankyrin repeat family A 100.0 1.9E-27 6.5E-32 212.9 18.7 163 129-295 2-164 (167)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 1E-27 3.5E-32 213.4 16.5 159 20-188 3-161 (162)
62 2rfm_A Putative ankyrin repeat 100.0 9.5E-28 3.3E-32 220.1 16.6 160 126-289 31-190 (192)
63 2rfm_A Putative ankyrin repeat 100.0 1.3E-27 4.4E-32 219.2 16.6 164 53-221 27-190 (192)
64 3v31_A Ankyrin repeat family A 99.9 2.5E-27 8.6E-32 212.1 17.0 160 21-190 2-161 (167)
65 2y1l_E Darpin-8.4; hydrolase-i 99.9 4.9E-27 1.7E-31 210.8 18.7 159 127-289 11-169 (169)
66 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.4E-27 8.2E-32 211.0 16.0 158 130-291 5-162 (162)
67 2y1l_E Darpin-8.4; hydrolase-i 99.9 4.8E-27 1.6E-31 210.8 18.1 161 16-186 8-168 (169)
68 3twr_A Tankyrase-2; ankyrin re 99.9 3.1E-27 1.1E-31 211.1 13.5 160 127-290 5-164 (165)
69 3f6q_A Integrin-linked protein 99.9 8.9E-27 3E-31 211.1 15.4 164 129-295 4-167 (179)
70 2vge_A RELA-associated inhibit 99.9 6E-30 2.1E-34 241.7 -6.6 180 97-283 22-205 (229)
71 1awc_B Protein (GA binding pro 99.9 3.4E-26 1.2E-30 201.7 17.4 150 131-285 3-152 (153)
72 2aja_A Ankyrin repeat family p 99.9 3.5E-29 1.2E-33 252.7 -2.5 241 24-290 67-343 (376)
73 3f6q_A Integrin-linked protein 99.9 2.1E-26 7.1E-31 208.7 16.0 168 95-266 4-171 (179)
74 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.8E-26 1.6E-30 201.3 17.2 154 130-288 2-155 (156)
75 1awc_B Protein (GA binding pro 99.9 5.5E-26 1.9E-30 200.3 17.5 150 97-251 3-152 (153)
76 3twr_A Tankyrase-2; ankyrin re 99.9 2E-26 6.9E-31 205.8 14.0 159 93-255 5-163 (165)
77 2vge_A RELA-associated inhibit 99.9 4E-29 1.4E-33 236.0 -4.1 204 38-252 1-208 (229)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.1E-25 3.9E-30 198.8 16.6 151 98-253 4-154 (156)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.2E-26 1.1E-30 217.7 7.3 180 59-244 3-193 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.1E-26 1.1E-30 217.8 6.3 179 94-278 3-193 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 6.3E-24 2.1E-28 183.2 12.6 131 157-291 5-136 (136)
82 1d9s_A Cyclin-dependent kinase 99.9 1.2E-23 4.1E-28 181.4 12.0 131 14-154 4-135 (136)
83 3t8k_A Uncharacterized protein 99.9 4E-24 1.4E-28 194.7 8.6 157 131-292 7-180 (186)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 1.1E-23 3.9E-28 186.1 10.9 142 127-273 9-151 (156)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 1.7E-23 5.9E-28 185.0 10.4 142 17-169 7-149 (156)
86 3t8k_A Uncharacterized protein 99.9 8.1E-24 2.8E-28 192.6 7.2 160 98-263 8-184 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.4E-22 8.3E-27 170.1 14.8 126 163-291 1-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 1.5E-22 5.2E-27 174.5 13.2 125 162-289 12-136 (136)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 1.4E-22 4.9E-27 174.6 13.0 126 18-152 10-135 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.4E-22 1.8E-26 168.0 15.3 125 21-154 1-125 (126)
91 3ui2_A Signal recognition part 99.9 1.9E-23 6.5E-28 199.1 1.8 170 20-220 13-182 (244)
92 3c5r_A BARD-1, BRCA1-associate 99.9 2.4E-22 8.3E-27 173.3 8.3 129 159-290 5-133 (137)
93 3deo_A Signal recognition part 99.9 9.7E-22 3.3E-26 178.6 10.1 139 20-186 42-181 (183)
94 3deo_A Signal recognition part 99.9 3.3E-21 1.1E-25 175.1 12.5 140 128-288 42-181 (183)
95 3ui2_A Signal recognition part 99.8 2.7E-21 9.3E-26 184.1 11.9 143 128-291 43-185 (244)
96 3c5r_A BARD-1, BRCA1-associate 99.8 7.9E-22 2.7E-26 170.1 7.3 127 17-152 5-131 (137)
97 3aaa_C Myotrophin, protein V-1 99.8 4.7E-21 1.6E-25 161.9 10.4 111 161-274 4-114 (123)
98 1dcq_A PYK2-associated protein 99.8 1.7E-20 5.8E-25 182.1 15.3 195 92-292 62-264 (278)
99 2b0o_E UPLC1; arfgap, structur 99.8 1.7E-20 5.9E-25 184.1 15.5 141 130-279 151-299 (301)
100 2b0o_E UPLC1; arfgap, structur 99.8 5.5E-21 1.9E-25 187.7 11.2 139 62-209 152-297 (301)
101 3aaa_C Myotrophin, protein V-1 99.8 7E-21 2.4E-25 160.9 9.0 111 19-138 4-114 (123)
102 3ehr_A Osteoclast-stimulating 99.8 5.1E-21 1.7E-25 179.4 8.8 133 161-295 70-202 (222)
103 1dcq_A PYK2-associated protein 99.8 1.6E-19 5.5E-24 175.2 16.7 193 57-256 62-262 (278)
104 3ehr_A Osteoclast-stimulating 99.8 1.3E-20 4.4E-25 176.7 8.2 136 127-266 70-206 (222)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 4.5E-19 1.5E-23 141.7 11.2 92 197-290 1-92 (93)
106 3jue_A Arfgap with coiled-coil 99.8 8.3E-19 2.9E-23 176.2 12.8 121 61-185 199-322 (368)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.3E-18 4.3E-23 139.1 11.3 92 21-120 1-92 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.8 1.6E-18 5.6E-23 182.4 14.1 141 23-173 133-276 (497)
109 3lvq_E ARF-GAP with SH3 domain 99.8 2.4E-18 8E-23 181.2 14.7 126 132-261 134-268 (497)
110 3jue_A Arfgap with coiled-coil 99.8 2.5E-18 8.7E-23 172.7 13.4 129 161-292 196-327 (368)
111 2l6b_A NR1C; ankyrin, consensu 99.7 1.9E-18 6.5E-23 143.9 8.0 107 160-269 5-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.7 3.5E-18 1.2E-22 142.3 8.8 108 17-133 4-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.6E-16 5.4E-21 131.2 10.4 99 9-115 11-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 3.2E-16 1.1E-20 129.3 10.1 91 193-285 19-109 (110)
115 2l2t_A Receptor tyrosine-prote 76.6 4.8 0.00016 25.8 4.5 31 465-495 7-37 (44)
116 2knc_B Integrin beta-3; transm 72.2 1.7 5.8E-05 32.0 1.9 31 465-495 8-38 (79)
117 2ks1_B Epidermal growth factor 70.6 4.8 0.00016 25.8 3.4 29 466-494 9-37 (44)
118 2jwa_A Receptor tyrosine-prote 59.6 14 0.00049 23.6 4.0 29 465-494 9-37 (44)
119 3gvo_A Pumilio 2, pumilio homo 54.8 13 0.00044 36.0 5.1 269 14-287 29-317 (351)
120 3gvo_A Pumilio 2, pumilio homo 45.7 19 0.00066 34.8 4.7 190 91-280 68-267 (351)
121 4ev6_A Magnesium transport pro 44.6 1.2E+02 0.0041 28.9 10.2 27 343-369 272-298 (339)
122 2k1k_A Ephrin type-A receptor 43.6 30 0.001 21.3 3.6 25 469-493 12-36 (38)
123 2k9j_B Integrin beta-3; transm 40.4 41 0.0014 21.3 4.0 29 464-492 6-34 (43)
124 3k49_A MRNA-binding protein PU 39.4 42 0.0014 32.6 6.0 194 57-252 74-284 (369)
125 1iij_A ERBB-2 receptor protein 38.7 14 0.00048 22.3 1.4 27 467-494 7-33 (35)
126 3k49_A MRNA-binding protein PU 37.0 48 0.0016 32.2 6.0 196 17-219 73-285 (369)
127 2l8s_A Integrin alpha-1; trans 36.5 68 0.0023 21.4 4.6 27 464-490 6-32 (54)
128 2knc_A Integrin alpha-IIB; tra 31.8 88 0.003 20.9 4.6 27 464-490 9-35 (54)
129 3rko_J NADH-quinone oxidoreduc 31.4 1.5E+02 0.005 25.5 7.4 17 401-417 4-20 (184)
130 2iub_A CORA, divalent cation t 31.0 1.5E+02 0.0051 28.6 8.4 64 305-368 258-321 (363)
131 2k1a_A Integrin alpha-IIB; sin 27.7 99 0.0034 19.4 4.1 25 465-489 8-32 (42)
132 4ev6_A Magnesium transport pro 26.2 3.4E+02 0.012 25.6 10.0 24 437-460 278-301 (339)
133 3s8f_C Cytochrome C oxidase po 26.2 1.1E+02 0.0037 18.3 4.1 20 468-487 8-27 (34)
134 3mkq_B Coatomer subunit alpha; 21.8 3.7E+02 0.013 22.8 9.5 18 102-119 43-60 (177)
135 3rhw_A Avermectin-sensitive gl 21.2 4.3E+02 0.015 24.9 9.7 35 443-477 249-283 (347)
136 3rqw_A ELIC pentameric ligand 20.5 5.2E+02 0.018 24.0 10.5 34 444-477 236-269 (322)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-42 Score=336.21 Aligned_cols=263 Identities=29% Similarity=0.416 Sum_probs=241.4
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccc-cCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344 21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQ-NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA 99 (537)
Q Consensus 21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~-n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 99 (537)
+|+||||.|++.|+.++|++|++.+++ ++.. +..|.||||+|+..|+.+++++|++.+ .+++..+..|.||
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~ 75 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCH
Confidence 578999999999999999999999875 4444 788999999999999999999999987 7888899999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc----------CCCCCcHHH
Q 009344 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITIS----------RSNGKTALH 169 (537)
Q Consensus 100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~----------~~~g~tpLh 169 (537)
||+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++.+.+. +.. +..|.||||
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHH
Confidence 99999999999999999999887654 889999999999999999999999998874 333 778999999
Q ss_pred HHHHcCcHHHHHHHHhc-CCccccccCCCCchHHHHHHhCCC----HHHHHHHHHhCCCCccccCCCCChHHHHHHHhCC
Q 009344 170 SAARNGRLEVLKTLLAA-DSVIAIRTDKKGQTALHMAVKGQN----IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR 244 (537)
Q Consensus 170 ~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~ 244 (537)
+|+..|+.+++++|++. +.+.. ..|..|.||||+|+..++ .+++++|++.+ .+++.+|..|+||||+|+..|+
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCC
Confidence 99999999999999998 55554 458999999999999999 99999999987 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344 245 EQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKN 295 (537)
Q Consensus 245 ~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~ 295 (537)
.+++++|++..+++++.+|..|.||||+|+..++.+++++|+++|++....
T Consensus 232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282 (285)
T ss_dssp HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence 999999999656999999999999999999999999999999999987543
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.4e-42 Score=355.58 Aligned_cols=281 Identities=28% Similarity=0.422 Sum_probs=171.1
Q ss_pred cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC-------
Q 009344 13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD------- 85 (537)
Q Consensus 13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~------- 85 (537)
.+.+.++..|.||||+|++.|+.++|++|++.+++ ++..+..|.||||+|+..|+.++|++|++.+.
T Consensus 71 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 144 (437)
T 1n11_A 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN------PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK 144 (437)
T ss_dssp CCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC
Confidence 44566777788888888888888888888877654 33344445555555555555555555554431
Q ss_pred ------------------------cccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcC
Q 009344 86 ------------------------LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141 (537)
Q Consensus 86 ------------------------~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g 141 (537)
+.+.+..+..|.||||.|+..|+.+++++|++++.+.... +..|.||||+|+..|
T Consensus 145 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 223 (437)
T 1n11_A 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQN 223 (437)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCC-CTTCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcC
Confidence 0344444555555555555555555555555555443322 445555666666666
Q ss_pred CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhC
Q 009344 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221 (537)
Q Consensus 142 ~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 221 (537)
+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.+++.... +..|.||||+|+..|+.+++++|++.+
T Consensus 224 ~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g 301 (437)
T 1n11_A 224 QVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHG 301 (437)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 66666666655554 3445555666666666666666666666665554432 566666666666666666666666665
Q ss_pred CCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCC
Q 009344 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNN 301 (537)
Q Consensus 222 ~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~ 301 (537)
.+++.+|..|+||||+|+..|+.+++++|++++ +++|.+|..|.||||+|+..|+.+++++|+++|++.......+.+
T Consensus 302 -~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t 379 (437)
T 1n11_A 302 -VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 379 (437)
T ss_dssp -CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCC
T ss_pred -ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCC
Confidence 666666666666666666666666666666665 666666666677777777666667777777666666555555555
Q ss_pred chH
Q 009344 302 PAR 304 (537)
Q Consensus 302 ~~~ 304 (537)
|..
T Consensus 380 ~l~ 382 (437)
T 1n11_A 380 PLA 382 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 3
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-41 Score=353.28 Aligned_cols=280 Identities=30% Similarity=0.398 Sum_probs=248.6
Q ss_pred ccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 009344 12 KMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI 91 (537)
Q Consensus 12 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~ 91 (537)
+.+.+..+..|.||||+||..|+.++|++|++.+.+ ++..|..|.||||+|+..|+.++|++|++.+ .+++.
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~ 75 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS------PNVSNVKVETPLHMAARAGHTEVAKYLLQNK--AKVNA 75 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHTTCC------SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT--CCSSC
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCC
Confidence 356678899999999999999999999999999876 6778899999999999999999999999987 78888
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH
Q 009344 92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA 171 (537)
Q Consensus 92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A 171 (537)
++..|.||||+|+..|+.+++++|++++++.+.. +..|.||||+|+..|+.+++++|++.+.+ ....+..|.||||+|
T Consensus 76 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A 153 (437)
T 1n11_A 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVA 153 (437)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHH
Confidence 9999999999999999999999999999887654 78999999999999999999999999887 466788899999999
Q ss_pred HHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251 (537)
Q Consensus 172 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L 251 (537)
+..|+.+++++|++++.+.... +..|.||||+|+..|+.+++++|++.+ .+++..+.+|.||||+|+..++.+++++|
T Consensus 154 ~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 154 AKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCC-CSSCCCHHHHHHHTTCHHHHHHHGGGT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999999999887654 889999999999999999999999987 78899999999999999999999999999
Q ss_pred HhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchH
Q 009344 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAR 304 (537)
Q Consensus 252 l~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~ 304 (537)
++.+ .+++..+..|.||||+|+..|+.+++++|+++|++.......+.++..
T Consensus 232 l~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 283 (437)
T 1n11_A 232 LQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283 (437)
T ss_dssp HHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred HHcC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 9998 899999999999999999999999999999999988776666666544
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.6e-41 Score=336.73 Aligned_cols=259 Identities=26% Similarity=0.352 Sum_probs=167.3
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCccccc-------
Q 009344 19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQ-SGETALYVAAEYGHVDLVAEMIKCYDLADAG------- 90 (537)
Q Consensus 19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~-~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~------- 90 (537)
+.+|+|+||.||+.|++++|+.||+.|++ ++.++. .|.||||+|+..|+.++|++|++++ ++++
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g--a~~~~~~~~~~ 93 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGA 93 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCC
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCC------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC--CchhhhccCCC
Confidence 34578999999999999999999999987 555554 5999999999999999999999987 4443
Q ss_pred --------------------------ccCCCCChHHHHHHHcCCHHHHHHHHhcCCccccc---------CCCCCChHHH
Q 009344 91 --------------------------IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMT---------VDLTNTTALH 135 (537)
Q Consensus 91 --------------------------~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~---------~d~~g~t~L~ 135 (537)
..|..|.||||.|+..|+.+++++|++.+.++... .+..|.||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~ 173 (337)
T 4g8k_A 94 TPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173 (337)
T ss_dssp CHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred chhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence 44555666666666666666666666655543321 2334556666
Q ss_pred HHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCc----HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344 136 TAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR----LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI 211 (537)
Q Consensus 136 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 211 (537)
+|+..|+.+++++|+++....++..|..|.||+|.++..+. ..++++|+++++++... |..|+||||+|+..|+.
T Consensus 174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~-d~~g~t~L~~a~~~~~~ 252 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHL 252 (337)
T ss_dssp HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC-CGGGCCHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhhhh
Confidence 66666666666666654222245555666666665554322 34555666666554433 55666666666666666
Q ss_pred HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344 212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291 (537)
Q Consensus 212 ~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~ 291 (537)
++++.|++..+.+++.+|.+|+||||+|+..|+.+++++|+++| +++|. .||||+|+..++.+++++|+++|++
T Consensus 253 ~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-Ad~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~ 326 (337)
T 4g8k_A 253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDC-----GDLVMTARRNYDHSLVKVLLSHGAK 326 (337)
T ss_dssp HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS-CSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCC
Confidence 66666665544666666666666666666666666666666655 45443 2466666666666666666666665
Q ss_pred h
Q 009344 292 S 292 (537)
Q Consensus 292 ~ 292 (537)
.
T Consensus 327 ~ 327 (337)
T 4g8k_A 327 E 327 (337)
T ss_dssp C
T ss_pred C
Confidence 4
No 5
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.1e-41 Score=329.62 Aligned_cols=267 Identities=23% Similarity=0.272 Sum_probs=208.7
Q ss_pred cccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhh-----HhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 009344 15 KQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAK-----LKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADA 89 (537)
Q Consensus 15 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~ 89 (537)
.+.....|+|+||+|+..|+.+.+..++..++... +...++..|..|.||||+|+..|+.++|++|++.+ .++
T Consensus 8 ~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~ 85 (285)
T 3d9h_A 8 HHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAV 85 (285)
T ss_dssp ----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCS
T ss_pred ccccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCC
Confidence 34445789999999999999988888776553311 12235678999999999999999999999999987 788
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHH
Q 009344 90 GIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALH 169 (537)
Q Consensus 90 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh 169 (537)
+.+|.+|.||||+|+..|+.+++++|++.+.+++.. |..|.||||+|+..|+.+++++|++.+.+.. .+.+|.||||
T Consensus 86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~ 162 (285)
T 3d9h_A 86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIH 162 (285)
T ss_dssp CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHH
T ss_pred CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHH
Confidence 899999999999999999999999999999887755 8899999999999999999999999988843 3456999999
Q ss_pred HHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHH
Q 009344 170 SAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249 (537)
Q Consensus 170 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~ 249 (537)
+|+..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ .+++. |..|+||||+|+..++.++++
T Consensus 163 ~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~-~~~g~t~L~~A~~~~~~~~v~ 239 (285)
T 3d9h_A 163 EAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVVRTASEELAC 239 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTC-CBTTBCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999887654 899999999999999999999999987 88884 899999999999999999999
Q ss_pred HHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc-Chhh
Q 009344 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH-GVES 292 (537)
Q Consensus 250 ~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~-g~~~ 292 (537)
+|+++| ++++.+|..|.||||+|+ ++.+++++|+++ |++.
T Consensus 240 ~Ll~~g-ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 240 LLMDFG-ADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp HHHHTT-CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred HHHHCC-CCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence 999997 999999999999999998 456899999998 5554
No 6
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-41 Score=342.98 Aligned_cols=264 Identities=20% Similarity=0.279 Sum_probs=231.3
Q ss_pred ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhccccc-CCCCCHHHHHHHcCCHHHHHHHH--------HcCCc
Q 009344 16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQN-QSGETALYVAAEYGHVDLVAEMI--------KCYDL 86 (537)
Q Consensus 16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~ 86 (537)
..++..|.||||.|+..|+ ++++.|+... ++..| ..|.||||+|+..|+.++|++|+ +.+
T Consensus 88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~--------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g-- 156 (373)
T 2fo1_E 88 TEPEPESPIKLHTEAAGSY-AITEPITRES--------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG-- 156 (373)
T ss_dssp ------CCCHHHHHHHSSS-CCCSCCSTTT--------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC--
T ss_pred cCCCCCCccHHHHHhcCCc-hHHHHhcccc--------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC--
Confidence 3567899999999999654 7777775421 55666 78999999999999998888877 555
Q ss_pred ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCC--CcccccCCCC
Q 009344 87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES--SLITISRSNG 164 (537)
Q Consensus 87 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~--~~~~~~~~~g 164 (537)
.+++.+|..|.||||+|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+. ...+..|.+|
T Consensus 157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g 235 (373)
T 2fo1_E 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 235 (373)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc-CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence 788999999999999999999999999999999988754 8899999999999999999999999872 2357788999
Q ss_pred CcHHHHHHHcC---cHHHHHHHHhcCCcccc-------ccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCCh
Q 009344 165 KTALHSAARNG---RLEVLKTLLAADSVIAI-------RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNS 234 (537)
Q Consensus 165 ~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t 234 (537)
.||||+|+..+ +.+++++|++.+.++.. ..|..|.||||+|+..|+.+++++|++.++.+++.+|.+|+|
T Consensus 236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T 315 (373)
T 2fo1_E 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 315 (373)
T ss_dssp CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence 99999999998 89999999999987754 246789999999999999999999999988999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344 235 PLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292 (537)
Q Consensus 235 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~ 292 (537)
|||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|++++++.
T Consensus 316 pL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 316 PIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred HHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 999999999999999999998 999999999999999999999999999999998763
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.2e-39 Score=327.89 Aligned_cols=282 Identities=28% Similarity=0.359 Sum_probs=249.0
Q ss_pred cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccccc
Q 009344 13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIK 92 (537)
Q Consensus 13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 92 (537)
.....++..+.|+||.||+.|+.+.|+.++..... .++.+|..|.||||+|+..|+.++|++|++.+ .+++.+
T Consensus 15 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~ 87 (351)
T 3utm_A 15 AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV-----NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAK 87 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTT-----TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCC
T ss_pred eeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCC-----CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcc
Confidence 34455677889999999999999999999986432 27788999999999999999999999999987 788999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH-
Q 009344 93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA- 171 (537)
Q Consensus 93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A- 171 (537)
+..|.||||+|+..|+.+++++|++++++++.. |..|.||||+|+..|+.+++++|++++.+ .+..+..|.+|+++|
T Consensus 88 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~ 165 (351)
T 3utm_A 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAP 165 (351)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCS
T ss_pred CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHh
Confidence 999999999999999999999999999887754 88999999999999999999999999988 577788999988765
Q ss_pred --------------------HHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC---CCHHHHHHHHHhCCCCcccc
Q 009344 172 --------------------ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG---QNIEVVQELIKAEPASVNMV 228 (537)
Q Consensus 172 --------------------~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~i~~~ 228 (537)
+..++.+.++.++....... ..+..|.||||+|+.. +..+++++|++.+ .+++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~ 243 (351)
T 3utm_A 166 TPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF-KQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEK 243 (351)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC-CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCC
T ss_pred hhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc-cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCc
Confidence 45666677777776654333 3478899999999999 5689999999987 999999
Q ss_pred CCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344 229 DTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL 306 (537)
Q Consensus 229 d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~ 306 (537)
|.+|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+++++|+++|++.......+.++....
T Consensus 244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 244 NKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence 999999999999999999999999998 99999999999999999999999999999999999988887777765544
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=320.02 Aligned_cols=250 Identities=19% Similarity=0.196 Sum_probs=225.5
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHH
Q 009344 21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAF 100 (537)
Q Consensus 21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L 100 (537)
+|.||||+||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.++|++|++.+ .+++..+..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L 73 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTADWHTPL 73 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHH
Confidence 689999999999999999999998876 7788999999999999999999999999987 78899999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHH
Q 009344 101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVL 180 (537)
Q Consensus 101 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v 180 (537)
|+|+..|+.+++++|++.+++... +..|.||||+|+..|+.+++++|++.+.+ .+..|.+|.||||+|+..|+.+++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v 150 (261)
T 2xai_A 74 FNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACV 150 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSC--SCTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHhCCHHHH
Confidence 999999999999999999988764 45699999999999999999999999988 677899999999999999999999
Q ss_pred HHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCC----
Q 009344 181 KTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE---- 256 (537)
Q Consensus 181 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~---- 256 (537)
++|++.++++.. +..|.||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+..+ +++++|++.+.
T Consensus 151 ~~Ll~~g~~~~~--~~~g~t~Lh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l 225 (261)
T 2xai_A 151 KKLLESGADVNQ--GKGQDSPLHAVARTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSL 225 (261)
T ss_dssp HHHHHHTCCTTC--CBTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCH
T ss_pred HHHHHcCCCCCC--CCCCCChHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccH
Confidence 999999988773 889999999999999999999999997 999999999999999999655 58899998763
Q ss_pred ---CCcccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 009344 257 ---TNLNGVNRTGETALDTAEKTGHSNLAALLR 286 (537)
Q Consensus 257 ---~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~ 286 (537)
++++.+|..|.||+|.|.+...++.++-++
T Consensus 226 ~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 226 MQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp HHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred HHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 346788999999999999887776655443
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.3e-40 Score=335.86 Aligned_cols=271 Identities=20% Similarity=0.215 Sum_probs=234.3
Q ss_pred ccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 009344 12 KMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI 91 (537)
Q Consensus 12 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~ 91 (537)
+...+..|..|.||||+||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.++|++|++.+. +.
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~ 79 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS------PTIQNRFGCTALHLACKFGCVDTAKYLASVGE----VH 79 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CC
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----Cc
Confidence 466777889999999999999999999999999876 67889999999999999999999999999873 33
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhc----CCcccc----------------cCCCCCChHHHHHHHcC--CHHHHHHH
Q 009344 92 KARNGFDAFHIAAKEGHLEVLKVLLAV----YPELAM----------------TVDLTNTTALHTAAMQG--HVEVLNFL 149 (537)
Q Consensus 92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~----~~~~~~----------------~~d~~g~t~L~~A~~~g--~~~iv~~L 149 (537)
.+.+|.||||+|+..|+.+++++|++. +.+... ..|..|.||||+|+..| +.+++++|
T Consensus 80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~L 159 (364)
T 3ljn_A 80 SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL 159 (364)
T ss_dssp CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHH
Confidence 446899999999999999999999998 555443 14668999999999999 99999999
Q ss_pred HHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCcc----ccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCc
Q 009344 150 IEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVI----AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASV 225 (537)
Q Consensus 150 l~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i 225 (537)
++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++. ....|..|+||||+|+..|+.+++++|++.+ +++
T Consensus 160 l~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~ 237 (364)
T 3ljn_A 160 VQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDV 237 (364)
T ss_dssp HHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCT
T ss_pred HHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCC
Confidence 999888 6788999999999999999999999999998872 3345889999999999999999999999987 999
Q ss_pred cccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCc------------ccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhh
Q 009344 226 NMVDTKGNSPLHIATRKGREQIVRLLLANSETNL------------NGVNRTGETALDTAEKTGHSNLAALLREHGVESA 293 (537)
Q Consensus 226 ~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~------------~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~ 293 (537)
+.+|.+|+||||+|+..|+.+++++|++++ .++ ...+..|.||+++|+..++.+.+..|++.+++..
T Consensus 238 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKT-DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316 (364)
T ss_dssp TCCCTTSCCHHHHHHHTCCHHHHHHHHHHS-CHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHhChHHHHHHHHHcC-CchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986 332 2356788999999999998888887877776654
Q ss_pred hh
Q 009344 294 KN 295 (537)
Q Consensus 294 ~~ 295 (537)
..
T Consensus 317 ~~ 318 (364)
T 3ljn_A 317 VR 318 (364)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 10
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.8e-39 Score=307.77 Aligned_cols=245 Identities=24% Similarity=0.280 Sum_probs=125.1
Q ss_pred ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccc-cc
Q 009344 14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAG-IK 92 (537)
Q Consensus 14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~ 92 (537)
+.+.+|.+|.||||+|+..|+...+ ...+...++.+++++|++.+ .+.+ ..
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~--------------------------~~~~~~~~~~~~v~~Ll~~g--~~~~~~~ 53 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLET--------------------------GNSEEEEDAPAVISDFIYQG--ASLHNQT 53 (253)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCCCCCCCCCcHHHHHHhccccccc--------------------------cchhhcCCChHHHHHHHHcc--CCccccc
Confidence 4567788888888888887721000 00123334555555555544 2322 23
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344 93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA 172 (537)
Q Consensus 93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~ 172 (537)
+..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+....+..+.+|.||||+|+
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 132 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 132 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH
Confidence 455555555555555555555555555554433 5555666666666666666666666555445555666666666666
Q ss_pred HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252 (537)
Q Consensus 173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll 252 (537)
..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+
T Consensus 133 ~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 210 (253)
T 1yyh_A 133 RLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL 210 (253)
T ss_dssp HHTCSSHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcChHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 666666666666666554433 666777777777777777777777665 667777777777777777777777777777
Q ss_pred hcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcCh
Q 009344 253 ANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290 (537)
Q Consensus 253 ~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~ 290 (537)
++| ++++.+|..|.||+|+|+..|+.+++++|.+...
T Consensus 211 ~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 211 DHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred HcC-CCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 776 6777777777777777777777777777765543
No 11
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=7.5e-39 Score=312.28 Aligned_cols=256 Identities=23% Similarity=0.189 Sum_probs=195.3
Q ss_pred cccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCC
Q 009344 15 KQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR 94 (537)
Q Consensus 15 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 94 (537)
.+.+|.+|.||||+||+.|+.++|++|++.+++. ..++.+|..|.||||+|+..|+.++|++|++++ .+++.++.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~ 76 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAER 76 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCC
Confidence 3568999999999999999999999999877652 236788999999999999999999999999987 78889999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCccccc------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Q 009344 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMT------------VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162 (537)
Q Consensus 95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~------------~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 162 (537)
.|.||||+|+..|+.+++++|++.+++.... ....+.++++.++..+.......++.......+..+.
T Consensus 77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 1oy3_D 77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156 (282)
T ss_dssp TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence 9999999999999999999999988764321 1234556777776665544443333333333667888
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHh
Q 009344 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK 242 (537)
Q Consensus 163 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~ 242 (537)
.|.||||+|+..|+.+++++|+++++++....+..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..
T Consensus 157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~ 235 (282)
T 1oy3_D 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLR 235 (282)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTS
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHc
Confidence 99999999999999999999999999888764456999999999999999999999997 99999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 009344 243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTG 277 (537)
Q Consensus 243 ~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~ 277 (537)
++.+++++|+++| ++++.+|..|.||+++|....
T Consensus 236 ~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 236 PNPILARLLRAHG-APEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp SCHHHHHHHHHTT-CCCCCCC--------------
T ss_pred CCcHHHHHHHHcC-CCcCcCCCcccccccccCCcc
Confidence 9999999999998 999999999999999987654
No 12
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.4e-37 Score=312.97 Aligned_cols=264 Identities=24% Similarity=0.280 Sum_probs=233.2
Q ss_pred ccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 009344 12 KMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI 91 (537)
Q Consensus 12 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~ 91 (537)
..+.+.+|..|.||||+|+..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.++|++|++.+ .+++.
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~ 119 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD------VHAKDKGGLVPLHNACSYGHYEVTELLLKHG--ACVNA 119 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCC
Confidence 455677899999999999999999999999999876 7788999999999999999999999999987 78888
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHH---------------------HHcCCHHHHHHHH
Q 009344 92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA---------------------AMQGHVEVLNFLI 150 (537)
Q Consensus 92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A---------------------~~~g~~~iv~~Ll 150 (537)
.+..|.||||+|+..|+.+++++|++++.+.... +..|.+|+++| +..++.+.+..++
T Consensus 120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (351)
T 3utm_A 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHH
Confidence 9999999999999999999999999999887655 78888887765 4556667777777
Q ss_pred HcCCCcccccCCCCCcHHHHHHHc---CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccc
Q 009344 151 EAESSLITISRSNGKTALHSAARN---GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227 (537)
Q Consensus 151 ~~~~~~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~ 227 (537)
..... ....+..|.||||+|+.. +..+++++|++.+.++... |..|+||||+|+.+|+.+++++|++.+ ++++.
T Consensus 199 ~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~ 275 (351)
T 3utm_A 199 ALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK-NKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNA 275 (351)
T ss_dssp TTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred Hhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCC
Confidence 66544 345677899999999999 6689999999999887654 899999999999999999999999987 99999
Q ss_pred cCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292 (537)
Q Consensus 228 ~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~ 292 (537)
+|..|+||||+|+..|+.+++++|+++| ++++..|..|.||+++| ..+++++|.+.+...
T Consensus 276 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~~ 335 (351)
T 3utm_A 276 LDSLGQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGFTAAQMG----NEAVQQILSESTPMR 335 (351)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHS----CHHHHHHHHHC----
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCChhhhh----hHHHHHHHHhccccc
Confidence 9999999999999999999999999998 89999999999999998 678888888776543
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.2e-38 Score=306.39 Aligned_cols=229 Identities=25% Similarity=0.241 Sum_probs=166.0
Q ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChH
Q 009344 54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTA 133 (537)
Q Consensus 54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 133 (537)
++.+|..|.||||+|+..|+.. + ....+...++.+++++|++.++++....|..|.||
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~------~----------------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~ 60 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGL------E----------------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60 (253)
T ss_dssp -----------------------------------------------------------------------CCCTTSCCH
T ss_pred CCCCCCCCCcHHHHHHhccccc------c----------------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcH
Confidence 4567788888888888877521 0 01125567799999999999999888778999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHH
Q 009344 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV 213 (537)
Q Consensus 134 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~ 213 (537)
||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.++
T Consensus 61 L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 139 (253)
T 1yyh_A 61 LHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 139 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHH
Confidence 9999999999999999999888 577889999999999999999999999999885556668999999999999999999
Q ss_pred HHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhh
Q 009344 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA 293 (537)
Q Consensus 214 v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~ 293 (537)
+++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..++.+++++|+++|++..
T Consensus 140 v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 217 (253)
T 1yyh_A 140 LEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217 (253)
T ss_dssp HHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence 99999987 899999999999999999999999999999998 8999999999999999999999999999999999988
Q ss_pred hhcCCCCCchHHHH
Q 009344 294 KNMKPQNNPARELK 307 (537)
Q Consensus 294 ~~~~~~~~~~~~~~ 307 (537)
.....+.+|.....
T Consensus 218 ~~d~~g~tpl~~A~ 231 (253)
T 1yyh_A 218 ITDHMDRLPRDIAQ 231 (253)
T ss_dssp CCCTTCCCHHHHHH
T ss_pred ccccCCCCHHHHHH
Confidence 88877877766543
No 14
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.1e-38 Score=301.80 Aligned_cols=234 Identities=22% Similarity=0.242 Sum_probs=182.9
Q ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCC
Q 009344 54 LPKQNQSGETALYVAAEYGHVDLVAEMIKC--YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT 131 (537)
Q Consensus 54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~--~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~ 131 (537)
++.+|..|.||||+|+..|+.++|++|++. ..+.+++..+..|.||||+|+..|+.+++++|++.+.++... |..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCC
Confidence 345677777788888777777777777762 012566777777888888888888888888888877776544 67788
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCC---cccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC
Q 009344 132 TALHTAAMQGHVEVLNFLIEAESS---LITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208 (537)
Q Consensus 132 t~L~~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 208 (537)
||||+|+..|+.+++++|++.+.. ..+..+..|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|+..
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence 888888888888888888887762 25667778888999999888899999999888877765337889999999999
Q ss_pred CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288 (537)
Q Consensus 209 g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~ 288 (537)
|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.++++.|.+.
T Consensus 161 ~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 161 NSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp TCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred CCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence 9999999999887 888999999999999999999999999999887 89999999999999999999999999888776
Q ss_pred Ch
Q 009344 289 GV 290 (537)
Q Consensus 289 g~ 290 (537)
++
T Consensus 239 ~a 240 (241)
T 1k1a_A 239 PA 240 (241)
T ss_dssp --
T ss_pred CC
Confidence 54
No 15
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-37 Score=301.59 Aligned_cols=239 Identities=26% Similarity=0.330 Sum_probs=219.3
Q ss_pred cccC-CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC
Q 009344 15 KQLT-GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA 93 (537)
Q Consensus 15 ~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 93 (537)
.+.. +..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+ .+++..+
T Consensus 31 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~ 102 (285)
T 1wdy_A 31 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------PVLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECD 102 (285)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBC
T ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccC
Confidence 3444 77899999999999999999999999876 6678899999999999999999999999987 7888899
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCcccccC---------CCCCChHHHHHHHcCCHHHHHHHHHc-CCCcccccCCC
Q 009344 94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV---------DLTNTTALHTAAMQGHVEVLNFLIEA-ESSLITISRSN 163 (537)
Q Consensus 94 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~ 163 (537)
..|.||||.|+..|+.+++++|++.+.+..... +..|.||||+|+..|+.+++++|++. +.+ .+..|..
T Consensus 103 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~ 181 (285)
T 1wdy_A 103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNM 181 (285)
T ss_dssp TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTT
T ss_pred cccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCC
Confidence 999999999999999999999999998876542 67799999999999999999999998 555 6888999
Q ss_pred CCcHHHHHHHcCc----HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q 009344 164 GKTALHSAARNGR----LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239 (537)
Q Consensus 164 g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A 239 (537)
|.||||+|+..++ .+++++|++.+.++... |..|.||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|
T Consensus 182 g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A 260 (285)
T 1wdy_A 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260 (285)
T ss_dssp SCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC-CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHH
Confidence 9999999999999 99999999999887654 899999999999999999999999966699999999999999999
Q ss_pred HHhCCHHHHHHHHhcCCCCcccCCC
Q 009344 240 TRKGREQIVRLLLANSETNLNGVNR 264 (537)
Q Consensus 240 ~~~~~~~iv~~Ll~~~~~~~~~~d~ 264 (537)
+..++.+++++|+++| ++++.+|.
T Consensus 261 ~~~~~~~i~~~Ll~~G-a~~~~~d~ 284 (285)
T 1wdy_A 261 VELKLKKIAELLCKRG-ASTDCGDL 284 (285)
T ss_dssp HHTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred HHcCcHHHHHHHHHcC-CCCCcccc
Confidence 9999999999999998 89988874
No 16
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.9e-37 Score=294.66 Aligned_cols=223 Identities=29% Similarity=0.402 Sum_probs=120.1
Q ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHH
Q 009344 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT 136 (537)
Q Consensus 57 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~ 136 (537)
.|..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||.|+..|+.+++++|++.+.++... +..|.||||+
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~ 83 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHL 83 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC-CTTSCCHHHH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCcHHHH
Confidence 3444444444444444444444444433 334444444444444444444444444444444433322 4444555555
Q ss_pred HHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHH
Q 009344 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQE 216 (537)
Q Consensus 137 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~ 216 (537)
|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHCCCHHHHHH
Confidence 555555555555555543334444555555555555555555555555555544332 5556666666666666666666
Q ss_pred HHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 009344 217 LIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL 285 (537)
Q Consensus 217 Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L 285 (537)
|++.+ .+++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|.||||+|+..++.+.+..+
T Consensus 163 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l 229 (237)
T 3b7b_A 163 LLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQM 229 (237)
T ss_dssp HHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred HHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 66655 566666666666666666666666666666665 66666666666666666666665443333
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3e-37 Score=293.27 Aligned_cols=230 Identities=25% Similarity=0.332 Sum_probs=210.8
Q ss_pred cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccccc
Q 009344 13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIK 92 (537)
Q Consensus 13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 92 (537)
++.+.++.+|.||||.|+..|+.+++++|++.+ .-++..+..|.||||+|+..|+.+++++|++.+ .+.+..
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~ 73 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG------ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG--ALVDPK 73 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCCCCC
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC------CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC--CCCCCC
Confidence 467889999999999999999999999999864 347788899999999999999999999999987 778889
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344 93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA 172 (537)
Q Consensus 93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~ 172 (537)
+..|.||||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+
T Consensus 74 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~ 152 (237)
T 3b7b_A 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAA 152 (237)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHH
Confidence 999999999999999999999999999655555688999999999999999999999999988 5778899999999999
Q ss_pred HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252 (537)
Q Consensus 173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll 252 (537)
..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+..++.+.+..|+
T Consensus 153 ~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 153 FSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHCCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887655 899999999999999999999999987 899999999999999999999987666555
Q ss_pred h
Q 009344 253 A 253 (537)
Q Consensus 253 ~ 253 (537)
+
T Consensus 231 ~ 231 (237)
T 3b7b_A 231 K 231 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.4e-38 Score=297.66 Aligned_cols=233 Identities=23% Similarity=0.278 Sum_probs=202.4
Q ss_pred ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344 16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN 95 (537)
Q Consensus 16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 95 (537)
+.+|.+|+||||+||+.|+.+++++|++.... ....++..|..|.||||+|+..|+.+++++|++.+ .+++..+..
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~ 78 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG--ASPMALDRH 78 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTT
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCC
Confidence 46789999999999999999999999972110 01227788999999999999999999999999987 788889999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCC----cccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH
Q 009344 96 GFDAFHIAAKEGHLEVLKVLLAVYP----ELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA 171 (537)
Q Consensus 96 g~t~Lh~A~~~g~~~iv~~Ll~~~~----~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A 171 (537)
|.||||+|+..|+.+++++|++.++ ++. ..|..|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|
T Consensus 79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157 (241)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Confidence 9999999999999999999999987 433 34788999999999999999999999999885433337899999999
Q ss_pred HHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251 (537)
Q Consensus 172 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L 251 (537)
+..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.++++.|
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 158 VENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred HHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 9999999999999999887654 899999999999999999999999987 99999999999999999999999999999
Q ss_pred HhcC
Q 009344 252 LANS 255 (537)
Q Consensus 252 l~~~ 255 (537)
.+.+
T Consensus 236 ~~~~ 239 (241)
T 1k1a_A 236 ATRP 239 (241)
T ss_dssp ----
T ss_pred ccCC
Confidence 8765
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.9e-37 Score=314.50 Aligned_cols=234 Identities=23% Similarity=0.246 Sum_probs=213.4
Q ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChH
Q 009344 54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTA 133 (537)
Q Consensus 54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 133 (537)
.+..|..|.||||+|+..|+.++|++|++.+ .+++..|..|.||||+|+..|+.+++++|++.+++.. +..|.||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~ 87 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKP 87 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCH
Confidence 4557788999999999999999999999987 7889999999999999999999999999999998543 3479999
Q ss_pred HHHHHHcCCHHHHHHHHHc----CCCcccc-----------------cCCCCCcHHHHHHHcC--cHHHHHHHHhcCCcc
Q 009344 134 LHTAAMQGHVEVLNFLIEA----ESSLITI-----------------SRSNGKTALHSAARNG--RLEVLKTLLAADSVI 190 (537)
Q Consensus 134 L~~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~ 190 (537)
||+|+..|+.+++++|++. +.+. +. .+.+|.||||+|+..| +.+++++|++.+.++
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~ 166 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence 9999999999999999998 5553 33 7778999999999999 999999999999887
Q ss_pred ccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCC-----ccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCC
Q 009344 191 AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPAS-----VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRT 265 (537)
Q Consensus 191 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~ 265 (537)
... |..|+||||+|+..|+.+++++|++.+ .+ ++..|..|+||||+|+..|+.+++++|+++| ++++..|..
T Consensus 167 ~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~ 243 (364)
T 3ljn_A 167 TAK-DKADETPLMRAMEFRNREALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNE 243 (364)
T ss_dssp TCC-CTTSCCHHHHHHHTTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTT
T ss_pred ccc-CCCCCCHHHHHHHcCCHHHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCC
Confidence 654 899999999999999999999999987 55 9999999999999999999999999999998 999999999
Q ss_pred CCCHHHHHHHcCcHHHHHHHHHcChhhhhhc
Q 009344 266 GETALDTAEKTGHSNLAALLREHGVESAKNM 296 (537)
Q Consensus 266 g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~ 296 (537)
|.||||+|+..|+.+++++|+++|++.....
T Consensus 244 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 274 (364)
T 3ljn_A 244 HTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274 (364)
T ss_dssp SCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred CCCHHHHHHHhChHHHHHHHHHcCCchhhhc
Confidence 9999999999999999999999998875443
No 20
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=301.87 Aligned_cols=230 Identities=20% Similarity=0.232 Sum_probs=209.5
Q ss_pred cccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCC
Q 009344 15 KQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR 94 (537)
Q Consensus 15 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 94 (537)
....+.+|.||||+||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.++|++|++.+ .+++.++.
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~ 123 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTA 123 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSSCCCT
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCC
Confidence 455788999999999999999999999998876 7788999999999999999999999999987 78899999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174 (537)
Q Consensus 95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 174 (537)
.|.||||+|+..|+.+++++|++.+++... +..|.||||+|+..|+.+++++|++.+.+ .+..|.+|.||||+|+..
T Consensus 124 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~ 200 (285)
T 3d9h_A 124 DWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACEN 200 (285)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHT
T ss_pred CCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence 999999999999999999999999988764 45699999999999999999999999988 677899999999999999
Q ss_pred CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344 175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254 (537)
Q Consensus 175 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 254 (537)
|+.+++++|++.++++. .|..|.||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+ ++.+++++|+++
T Consensus 201 ~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 201 QQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp TCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred CcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 99999999999998876 3889999999999999999999999987 999999999999999999 457999999998
Q ss_pred CCCCcc
Q 009344 255 SETNLN 260 (537)
Q Consensus 255 ~~~~~~ 260 (537)
.++++.
T Consensus 276 ~~a~l~ 281 (285)
T 3d9h_A 276 EGASLP 281 (285)
T ss_dssp C-----
T ss_pred hccCCC
Confidence 656543
No 21
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.9e-37 Score=290.63 Aligned_cols=228 Identities=27% Similarity=0.356 Sum_probs=145.1
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCCh
Q 009344 19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFD 98 (537)
Q Consensus 19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 98 (537)
+..+++|||.|++.|+.+.++++++.++. .++..|..|.||||+|+..|+.++|++|++.+ .+++.++..|.|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t 75 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKS-----LATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWS 75 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCC
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchh-----hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCCC
Confidence 34567777777777777777777765542 25556677777777777777777777777765 556666666666
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH
Q 009344 99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE 178 (537)
Q Consensus 99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~ 178 (537)
|||+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++.+.
T Consensus 76 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------------------ 130 (231)
T 3aji_A 76 PLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGA------------------------ 130 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHcCHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCC------------------------
Confidence 666666666666666666666554432 4445555555555555555555555444
Q ss_pred HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCC
Q 009344 179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETN 258 (537)
Q Consensus 179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~ 258 (537)
+... .|..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|+++| ++
T Consensus 131 ----------~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~ 197 (231)
T 3aji_A 131 ----------NPDA-KDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG-AS 197 (231)
T ss_dssp ----------CTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred ----------CCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC-CC
Confidence 3332 2455566666666666666666666654 566666666777777777777777777777665 66
Q ss_pred cccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344 259 LNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291 (537)
Q Consensus 259 ~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~ 291 (537)
++..|..|.||+|+|...++.+++++|.++|++
T Consensus 198 ~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 198 IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 666677777777777666666677777666653
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6.4e-37 Score=289.83 Aligned_cols=209 Identities=26% Similarity=0.313 Sum_probs=179.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174 (537)
Q Consensus 95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 174 (537)
.+.+|||.|+..|+.+.+++|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHc
Confidence 4567777777777777777777777666666677788888888888888888888887766 566777888888888888
Q ss_pred CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344 175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254 (537)
Q Consensus 175 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 254 (537)
|+.+++++|++++.+.... |..|.||||+|+..|+.+++++|++.+ .+++..|..|+||||+|+..|+.+++++|+++
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 8888888888888776544 888999999999999999999999987 89999999999999999999999999999998
Q ss_pred CCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHHH
Q 009344 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELK 307 (537)
Q Consensus 255 ~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~ 307 (537)
+ ++++..|..|.||||+|+..++.+++++|+++|++.......+.+|.....
T Consensus 162 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 213 (231)
T 3aji_A 162 K-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213 (231)
T ss_dssp T-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSC
T ss_pred C-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 8 899999999999999999999999999999999999888777877766543
No 23
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.9e-37 Score=294.82 Aligned_cols=221 Identities=25% Similarity=0.312 Sum_probs=201.6
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHH
Q 009344 60 SGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAM 139 (537)
Q Consensus 60 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~ 139 (537)
.|.||||+|+..|+.++|++|++.+ .+++..+.+|.||||+|+..|+.+++++|++.+.+++.. |..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHH
Confidence 5899999999999999999999987 788999999999999999999999999999999887655 8899999999999
Q ss_pred cCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHH
Q 009344 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK 219 (537)
Q Consensus 140 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 219 (537)
.|+.+++++|++.+.+.. .+.+|.||||+|+..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 999999999999998853 3556999999999999999999999999887654 8999999999999999999999999
Q ss_pred hCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344 220 AEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291 (537)
Q Consensus 220 ~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~ 291 (537)
.+ .+++. |..|+||||+|+..++.+++++|++.| ++++.+|..|.||+|+|+..+ +++++|++++..
T Consensus 156 ~g-~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~ 222 (261)
T 2xai_A 156 SG-ADVNQ-GKGQDSPLHAVARTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPES--PLAQLFLEREGP 222 (261)
T ss_dssp HT-CCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CC
T ss_pred cC-CCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCChhhhccccc--cHHHHHHhccCC
Confidence 98 88885 899999999999999999999999998 999999999999999999654 588889887653
No 24
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.7e-36 Score=284.82 Aligned_cols=212 Identities=27% Similarity=0.377 Sum_probs=119.0
Q ss_pred CCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc-cCCCCChHH
Q 009344 22 DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI-KARNGFDAF 100 (537)
Q Consensus 22 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-~~~~g~t~L 100 (537)
|+||||.|++.|+.++|+.|++.+++ .....|..|.||||+|+..|+.+++++|++.+...+.+. .+..|.|||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L 76 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGG-----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCcc-----ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHH
Confidence 56677777777777777777666543 233456666666666666666666666666653334443 455555666
Q ss_pred HHHHHcCCHHHHHHHHhcC--CcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH
Q 009344 101 HIAAKEGHLEVLKVLLAVY--PELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE 178 (537)
Q Consensus 101 h~A~~~g~~~iv~~Ll~~~--~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~ 178 (537)
|+|+..|+.+++++|++.+ +++.. .|..|.||||+|+..|+.+++++|++++.+ .+..
T Consensus 77 ~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~------------------ 136 (228)
T 2dzn_A 77 HIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIK------------------ 136 (228)
T ss_dssp HHHHHHCCHHHHHHHHSSSSCCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCC------------------
T ss_pred HHHHHcCCHHHHHHHHhCCCCccccc-CCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-cccc------------------
Confidence 6666666666666555554 33222 244444555555555555555555544443 2333
Q ss_pred HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH-hcCCC
Q 009344 179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL-ANSET 257 (537)
Q Consensus 179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll-~~~~~ 257 (537)
|..|+||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..|+.+++++|+ +.| +
T Consensus 137 ----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a 199 (228)
T 2dzn_A 137 ----------------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-A 199 (228)
T ss_dssp ----------------CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-C
T ss_pred ----------------CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-C
Confidence 4455555555555555555555555554555555556666666666666666666665 333 5
Q ss_pred CcccCCCCCCCHHHHHHH
Q 009344 258 NLNGVNRTGETALDTAEK 275 (537)
Q Consensus 258 ~~~~~d~~g~T~L~~A~~ 275 (537)
+++..|..|.||+|+|..
T Consensus 200 ~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 200 EYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp CSCCBCTTSCBGGGGCSS
T ss_pred CCCccCCCCCcHHHHHHH
Confidence 566666666666665543
No 25
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=284.30 Aligned_cols=232 Identities=23% Similarity=0.313 Sum_probs=205.2
Q ss_pred ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHH
Q 009344 55 PKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTAL 134 (537)
Q Consensus 55 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L 134 (537)
+..|..|.||||.|+..|+.+++++|++.+ .+++..+..|.||||.|+..|+.+++++|++.+++.....+..|.|||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence 456788899999999999999999999977 778888889999999999999999999999999888777677799999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC-HHH
Q 009344 135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN-IEV 213 (537)
Q Consensus 135 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~ 213 (537)
|+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.+.+.... +..|.||||+|+..++ .++
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCSSTT
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHhCChHHH
Confidence 999999999999999999887 5677888999999999999999999999998876644 8899999999996555 788
Q ss_pred HHHHHHhCCCCccccCC-CCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344 214 VQELIKAEPASVNMVDT-KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292 (537)
Q Consensus 214 v~~Ll~~~~~~i~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~ 292 (537)
+++|++.+ .+++..+. .|+||||+|+..++.+++++|+++| ++++..|..|.|||++|+..++.+++++|++++++.
T Consensus 159 ~~~L~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 159 TRLLLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHTT-CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHhcC-CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 88888887 88888887 8999999999999999999999998 899999999999999999999999999999998765
No 26
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.5e-36 Score=283.27 Aligned_cols=209 Identities=28% Similarity=0.311 Sum_probs=178.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcC--CCcccccCCCCCcHHHHHHH
Q 009344 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE--SSLITISRSNGKTALHSAAR 173 (537)
Q Consensus 96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpLh~A~~ 173 (537)
|.||||.|+..|+.+++++|++.+++.....|..|.||||+|+..|+.+++++|++.+ .+.....+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 5677777777777777777777777766656778888888888888888888888887 44333367788889999998
Q ss_pred cCcHHHHHHHHhcC--CccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344 174 NGRLEVLKTLLAAD--SVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251 (537)
Q Consensus 174 ~g~~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L 251 (537)
.|+.+++++|++++ ++.. ..+..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 89999999998887 4444 34888999999999999999999999987 89999999999999999999999999999
Q ss_pred HhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHH-HcChhhhhhcCCCCCchHHH
Q 009344 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLR-EHGVESAKNMKPQNNPAREL 306 (537)
Q Consensus 252 l~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~-~~g~~~~~~~~~~~~~~~~~ 306 (537)
++.+..+++..|..|+||||+|+..++.+++++|+ ++|++.......+.+|....
T Consensus 160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A 215 (228)
T 2dzn_A 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215 (228)
T ss_dssp HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence 99988999999999999999999999999999999 99999988888777776544
No 27
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.9e-37 Score=302.41 Aligned_cols=250 Identities=26% Similarity=0.353 Sum_probs=215.0
Q ss_pred CCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCC
Q 009344 18 TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGF 97 (537)
Q Consensus 18 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~ 97 (537)
.+..|.||||.||..|+.++|++|++.+.+ ++..|..|.||||+|+..|+.++|++|++.+ .+++..+..|.
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~ 107 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGW 107 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSC
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCC
Confidence 345788999999999999999999998876 7778999999999999999999999999987 78889999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344 98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL 177 (537)
Q Consensus 98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~ 177 (537)
||||+|+..|+.+++++|+++++++... |..|.||||+|+..++.++++.++.......+..+..+.++++
T Consensus 108 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-------- 178 (299)
T 1s70_B 108 IPLHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-------- 178 (299)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------
Confidence 9999999999999999999999887755 8899999999999999999999988754433333333333333
Q ss_pred HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCC
Q 009344 178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257 (537)
Q Consensus 178 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~ 257 (537)
..+..++..+.......+..|.||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+..|+.+++++|+++| +
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a 256 (299)
T 1s70_B 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-C 256 (299)
T ss_dssp HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-C
Confidence 34556666666666667889999999999999999999999987 999999999999999999999999999999998 9
Q ss_pred CcccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 009344 258 NLNGVNRTGETALDTAEKTGHSNLAALLR 286 (537)
Q Consensus 258 ~~~~~d~~g~T~L~~A~~~~~~~i~~~L~ 286 (537)
+++.+|..|.||||+|.......+.+++.
T Consensus 257 d~~~~d~~g~t~l~~A~~~~~~~l~~l~~ 285 (299)
T 1s70_B 257 DMEAVNKVGQTAFDVADEDILGYLEELQK 285 (299)
T ss_dssp CTTCCCTTSCCTTTSCCSGGGHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997654444444443
No 28
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.9e-36 Score=294.19 Aligned_cols=242 Identities=17% Similarity=0.196 Sum_probs=215.0
Q ss_pred HHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCH
Q 009344 30 ARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHL 109 (537)
Q Consensus 30 a~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~ 109 (537)
++..+.+.+..+|..+ + ++.+|..|.||||+|+..|+.++|++|++.+ .+++.. +|.||||+|+..|+.
T Consensus 7 i~~~~~~~v~~lL~~~-~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~~~g~~ 75 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-D------TFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAATLEDT 75 (285)
T ss_dssp GGGCCHHHHHHHHHST-T------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHHHTTSSSC
T ss_pred HHhcCHHHHHHHHHhC-C------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHHHHHcCCH
Confidence 4556666666666544 2 6788999999999999999999999999987 666655 599999999999999
Q ss_pred HHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCC-CcHHHHHHHcCcHHHHHHHHhcCC
Q 009344 110 EVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNG-KTALHSAARNGRLEVLKTLLAADS 188 (537)
Q Consensus 110 ~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpLh~A~~~g~~~~v~~Ll~~~~ 188 (537)
+++++|++.+++++.. |..|.||||+|+..|+.+++++|++++.+ .+..+..| .||||+|+..|+.+++++|+++++
T Consensus 76 ~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 76 KIVKILLFSGLDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153 (285)
T ss_dssp HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 9999999999987754 88999999999999999999999999888 57788888 899999999999999999999998
Q ss_pred ccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChH-HHHHHHhCCHHHHHHHHhcCCCCcccCCCCCC
Q 009344 189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSP-LHIATRKGREQIVRLLLANSETNLNGVNRTGE 267 (537)
Q Consensus 189 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~ 267 (537)
+... ...|.||||+|+..|+.+++++|++.+ ++++.+|..|+|| ||+|+..++.+++++|+++| ++++..|.
T Consensus 154 ~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~--- 226 (285)
T 3kea_A 154 STFD--LAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANL--- 226 (285)
T ss_dssp TTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTG---
T ss_pred cccc--ccCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCh---
Confidence 7632 238999999999999999999999997 8999999999998 99999999999999999998 89998883
Q ss_pred CHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344 268 TALDTAEKTGHSNLAALLREHGVESAKN 295 (537)
Q Consensus 268 T~L~~A~~~~~~~i~~~L~~~g~~~~~~ 295 (537)
.|+..++.+++++|+++|++....
T Consensus 227 ----~a~~~~~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 227 ----ENVLLDDAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp ----GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred ----hhhhcCCHHHHHHHHHcCCCCCCc
Confidence 456789999999999999987544
No 29
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-36 Score=307.33 Aligned_cols=232 Identities=24% Similarity=0.317 Sum_probs=208.0
Q ss_pred ccccCC-CCCCcHhHHHHHcCCHHHHHHHH--------ccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 009344 14 TKQLTG-KRDDTALHSAARAGNLDEVKDIL--------TGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCY 84 (537)
Q Consensus 14 ~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~ 84 (537)
..+.++ ..|.||||+|+..|+.+++++|+ +.+.+ ++.+|..|.||||+|+..|+.++|++|++.+
T Consensus 116 ~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 189 (373)
T 2fo1_E 116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKAG 189 (373)
T ss_dssp TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC------CcCCCCCCCCHHHHHHHcChHHHHHHHHHCC
Confidence 456666 78999999999999999888877 55654 7788999999999999999999999999987
Q ss_pred CcccccccCCCCChHHHHHHHcCCHHHHHHHHhcC---CcccccCCCCCChHHHHHHHcC---CHHHHHHHHHcCCCccc
Q 009344 85 DLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVY---PELAMTVDLTNTTALHTAAMQG---HVEVLNFLIEAESSLIT 158 (537)
Q Consensus 85 ~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~---~~~~~~~d~~g~t~L~~A~~~g---~~~iv~~Ll~~~~~~~~ 158 (537)
.+++..+..|.||||+|+..|+.+++++|++.+ .++. ..|..|.||||+|+..+ +.+++++|++.+.+...
T Consensus 190 --a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~ 266 (373)
T 2fo1_E 190 --ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266 (373)
T ss_dssp --CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred --CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence 788899999999999999999999999999987 3444 34889999999999998 89999999999988532
Q ss_pred -------ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCC
Q 009344 159 -------ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231 (537)
Q Consensus 159 -------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~ 231 (537)
..|..|.||||+|+..|+.+++++|++.+......+|..|+||||+|+..|+.+++++|++.+ ++++.+|..
T Consensus 267 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~ 345 (373)
T 2fo1_E 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDAT 345 (373)
T ss_dssp CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSS
T ss_pred ccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCC
Confidence 256789999999999999999999998874444456999999999999999999999999987 999999999
Q ss_pred CChHHHHHHHhCCHHHHHHHHhcC
Q 009344 232 GNSPLHIATRKGREQIVRLLLANS 255 (537)
Q Consensus 232 G~t~Lh~A~~~~~~~iv~~Ll~~~ 255 (537)
|+||||+|+..|+.+++++|++++
T Consensus 346 g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 346 DHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999999999999999887
No 30
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.2e-36 Score=292.15 Aligned_cols=250 Identities=21% Similarity=0.220 Sum_probs=192.5
Q ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCh
Q 009344 54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLA-DAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTT 132 (537)
Q Consensus 54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t 132 (537)
++.+|..|.||||+|+..|+.++|++|++.+... .++.++..|.||||+|+..|+.+++++|+++++++... |..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCC
Confidence 5678999999999999999999999999976322 27888999999999999999999999999999988755 889999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCccc------------ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCch
Q 009344 133 ALHTAAMQGHVEVLNFLIEAESSLIT------------ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQT 200 (537)
Q Consensus 133 ~L~~A~~~g~~~iv~~Ll~~~~~~~~------------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 200 (537)
|||+|+..|+.+++++|++.++.... .....+.++++.++..+.......++..........|..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 99999999999999999998765321 122345677777776655544444433322333455889999
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCCCccccCCC-CChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcH
Q 009344 201 ALHMAVKGQNIEVVQELIKAEPASVNMVDTK-GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHS 279 (537)
Q Consensus 201 ~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~-G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~ 279 (537)
|||+|+..|+.+++++|++.+ .+++..+.. |+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~ 238 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNP 238 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCH
T ss_pred HHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCc
Confidence 999999999999999999998 889988854 999999999999999999999997 99999999999999999999999
Q ss_pred HHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344 280 NLAALLREHGVESAKNMKPQNNPAREL 306 (537)
Q Consensus 280 ~i~~~L~~~g~~~~~~~~~~~~~~~~~ 306 (537)
+++++|+++|++.......+.+|....
T Consensus 239 ~~v~~Ll~~ga~~~~~~~~g~tpl~~a 265 (282)
T 1oy3_D 239 ILARLLRAHGAPEPEDGGDKLSPCSSS 265 (282)
T ss_dssp HHHHHHHHTTCCCCCCC----------
T ss_pred HHHHHHHHcCCCcCcCCCccccccccc
Confidence 999999999999988777777665433
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=294.79 Aligned_cols=220 Identities=23% Similarity=0.325 Sum_probs=112.9
Q ss_pred CCCCCCcHhHHHHHcCCHHHHHHHHccCchhh--HhhhcccccCCCCCHHHHHHHcCCH-HHHHHHHHcCCcccccccCC
Q 009344 18 TGKRDDTALHSAARAGNLDEVKDILTGTEEAK--LKELLPKQNQSGETALYVAAEYGHV-DLVAEMIKCYDLADAGIKAR 94 (537)
Q Consensus 18 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~--~~~ll~~~n~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~ 94 (537)
+|.++.++||.||+.|+.++|++||+.+.+.. ....++..+..|.||||.|+..++. .++++|++.| .+++.+|.
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d~ 84 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTSQ 84 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC--CCTTCCCT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcCC
Confidence 35566788888888888888888888765421 1122445566677777777766654 3666666655 56666666
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174 (537)
Q Consensus 95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 174 (537)
+|.||||+|+..|+.+++++|++.+++.... +..|.||+|+|+..++.+++++|++.+.+ ++..|..|.||||+|+..
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
Confidence 7777777777777777777777666655433 55566666666666666666666666555 344555555555555555
Q ss_pred CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhC
Q 009344 175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG 243 (537)
Q Consensus 175 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~ 243 (537)
|+.+++++|++.++++... +..|+||||+|+.+|+.+++++|++.+ ++++.+|.+|+||||+|+.++
T Consensus 163 g~~~~v~~Ll~~gadvn~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 163 GHHELVALLLQHGASINAS-NNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp TCGGGHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTC
T ss_pred CCHHHHHHHHHCCCCCCcc-ccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCC
Confidence 5555555555555544332 455555555555555555555555544 555555555555555554443
No 32
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.7e-35 Score=296.88 Aligned_cols=232 Identities=27% Similarity=0.384 Sum_probs=202.6
Q ss_pred cCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCC-CCChHHHHHHHcCCHHHHHHHHhcCCcccc------------
Q 009344 58 NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR-NGFDAFHIAAKEGHLEVLKVLLAVYPELAM------------ 124 (537)
Q Consensus 58 n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~------------ 124 (537)
+..|.||||.|++.|+.++|++||++| ++++.++. .|.||||+|+..|+.+++++|++++++...
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 345789999999999999999999988 78887765 599999999999999999999998875432
Q ss_pred --------------------cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc---------cccCCCCCcHHHHHHHcC
Q 009344 125 --------------------TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI---------TISRSNGKTALHSAARNG 175 (537)
Q Consensus 125 --------------------~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpLh~A~~~g 175 (537)
..|..|.||||+|+..|+.+++++|++.+.+.. ...+..|.||||+|+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 346789999999999999999999999987642 123557899999999999
Q ss_pred cHHHHHHHHhc-CCccccccCCCCchHHHHHHhCCC----HHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHH
Q 009344 176 RLEVLKTLLAA-DSVIAIRTDKKGQTALHMAVKGQN----IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRL 250 (537)
Q Consensus 176 ~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~ 250 (537)
+.+++++|+++ +.++. .+|..|.|++|.++..+. .+++++|++.+ +++|.+|.+|+||||+|+..|+.++++.
T Consensus 180 ~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~ 257 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQR 257 (337)
T ss_dssp CHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence 99999999965 56554 458999999998775432 45788888887 9999999999999999999999999999
Q ss_pred HHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhh
Q 009344 251 LLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA 293 (537)
Q Consensus 251 Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~ 293 (537)
|++..+++++.+|.+|.||||+|+..|+.+++++|+++|++..
T Consensus 258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 258 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300 (337)
T ss_dssp HHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred HHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 9998779999999999999999999999999999999999764
No 33
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=278.87 Aligned_cols=229 Identities=22% Similarity=0.294 Sum_probs=208.5
Q ss_pred ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccc-ccCC
Q 009344 16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAG-IKAR 94 (537)
Q Consensus 16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~ 94 (537)
...|..|.|+||.|++.|+.+++++|++.+.+ ++..+..|.||||+|+..|+.++|++|++.+ .+.+ ..+.
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~ 74 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD------VRQPDKENVTLLHWAAINNRIDLVKYYISKG--AIVDQLGGD 74 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCBTT
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCC------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC--CcchhhcCC
Confidence 44678899999999999999999999998876 6778899999999999999999999999987 4444 3445
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174 (537)
Q Consensus 95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 174 (537)
.|.||||.|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..
T Consensus 75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~ 152 (240)
T 3eu9_A 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYR 152 (240)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred cCCChhHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHh
Confidence 6999999999999999999999999887654 88999999999999999999999999887 677889999999999976
Q ss_pred Cc-HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHh
Q 009344 175 GR-LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253 (537)
Q Consensus 175 g~-~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~ 253 (537)
++ .+++++|++.+.+.....+..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++
T Consensus 153 ~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp CCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred CChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 65 899999999999887764458999999999999999999999998 9999999999999999999999999999999
Q ss_pred cC
Q 009344 254 NS 255 (537)
Q Consensus 254 ~~ 255 (537)
.+
T Consensus 232 ~~ 233 (240)
T 3eu9_A 232 AR 233 (240)
T ss_dssp HC
T ss_pred hh
Confidence 87
No 34
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=293.63 Aligned_cols=230 Identities=23% Similarity=0.309 Sum_probs=175.4
Q ss_pred ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc------cccccCCCCChHHHHHHHcCCH-HHHHHHHhcCCcccccCC
Q 009344 55 PKQNQSGETALYVAAEYGHVDLVAEMIKCYDLA------DAGIKARNGFDAFHIAAKEGHL-EVLKVLLAVYPELAMTVD 127 (537)
Q Consensus 55 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~------~~~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~d 127 (537)
.++|..+.+||+.||..|+.++|++|++.+... ..+..+..|.||||.|+..++. .+++.|++.+.+++.. |
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~-d 83 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT-S 83 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC-C
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc-C
Confidence 346777889999999999999999999976321 2455678899999999988775 4889999999987755 8
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHh
Q 009344 128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK 207 (537)
Q Consensus 128 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 207 (537)
.+|.||||+|+..|+.+++++|++.+++ .+..+.+|.||+|+|+..++.++++.|++.++++... |..|+||||+|+.
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~-d~~g~TpL~~A~~ 161 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK-DLSGNTPLIYACS 161 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHH
Confidence 8999999999999999999999999988 5778899999999999999999999999999887654 9999999999999
Q ss_pred CCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCc-HHHHHHHH
Q 009344 208 GQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH-SNLAALLR 286 (537)
Q Consensus 208 ~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~-~~i~~~L~ 286 (537)
.|+.+++++|++.+ +++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.++ .++++.+.
T Consensus 162 ~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~ 239 (269)
T 4b93_B 162 GGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVP 239 (269)
T ss_dssp TTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCHHHHHTTC--
T ss_pred CCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCcHHHHHHHHH
Confidence 99999999999987 999999999999999999999999999999998 9999999999999999987765 24444444
Q ss_pred HcC
Q 009344 287 EHG 289 (537)
Q Consensus 287 ~~g 289 (537)
..+
T Consensus 240 ~~~ 242 (269)
T 4b93_B 240 SCV 242 (269)
T ss_dssp ---
T ss_pred Hhc
Confidence 444
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.9e-35 Score=275.26 Aligned_cols=215 Identities=24% Similarity=0.321 Sum_probs=166.0
Q ss_pred CCHHHHHHHHHcCCcccccc-cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHH
Q 009344 72 GHVDLVAEMIKCYDLADAGI-KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLI 150 (537)
Q Consensus 72 g~~~iv~~Ll~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll 150 (537)
|+.+++++|++.+ .+.+. .+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEETT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHcC--CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 5566677777665 34433 3667777777777777777777777777665543 667777777777777777888887
Q ss_pred HcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCC
Q 009344 151 EAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230 (537)
Q Consensus 151 ~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~ 230 (537)
+.++...+..+..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+ .+++.+|.
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~ 156 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNN 156 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCT
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-CCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCC
Confidence 7776556677777888888888888888888888877765544 777888888888888888888888876 78888888
Q ss_pred CCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292 (537)
Q Consensus 231 ~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~ 292 (537)
.|+||||+|+..++.+++++|++++ ++++..|..|.||+++|+..++.+++++|+++|+..
T Consensus 157 ~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 157 REETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 8888888888888888888888887 788888888888888888888888888888888754
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.2e-34 Score=272.63 Aligned_cols=213 Identities=24% Similarity=0.291 Sum_probs=193.6
Q ss_pred CCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHH
Q 009344 33 GNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVL 112 (537)
Q Consensus 33 g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv 112 (537)
|+.+++++|++.+.+ +....|..|.||||+|+..|+.++|++|++.+ .+++..+..|.||||+|+..|+.+++
T Consensus 2 g~~~~i~~Ll~~g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 2 DAPAVISDFIYQGAS-----LHNQTDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVF 74 (223)
T ss_dssp ---CCEETTEETTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHcCCC-----cccccCCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence 678889999998875 23445889999999999999999999999987 78888999999999999999999999
Q ss_pred HHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCcccc
Q 009344 113 KVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI 192 (537)
Q Consensus 113 ~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 192 (537)
++|++.++......+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+.+...
T Consensus 75 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 153 (223)
T 2f8y_A 75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153 (223)
T ss_dssp HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999855556688999999999999999999999999888 677889999999999999999999999999888765
Q ss_pred ccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344 193 RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS 255 (537)
Q Consensus 193 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~ 255 (537)
. |..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|++++
T Consensus 154 ~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g 214 (223)
T 2f8y_A 154 Q-NNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214 (223)
T ss_dssp C-CTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred c-CCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence 4 899999999999999999999999998 899999999999999999999999999999988
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=8.4e-35 Score=284.69 Aligned_cols=228 Identities=15% Similarity=0.182 Sum_probs=203.3
Q ss_pred ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC
Q 009344 14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA 93 (537)
Q Consensus 14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 93 (537)
..+.+|.+|.||||+|+..|+.++|++|++.+.+ ++.. +|.||||+|+..|+.++|++|++.+ .+++.++
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~d 92 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL------KNLL--ENEFPLHQAATLEDTKIVKILLFSG--LDDSQFD 92 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG------GSCC--TTCCHHHHHTTSSSCHHHHHHHHTT--CCTTCCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCC--CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcC
Confidence 4678899999999999999999999999999876 4444 4999999999999999999999987 7888899
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344 94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN-TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA 172 (537)
Q Consensus 94 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~ 172 (537)
..|.||||+|+..|+.+++++|+++++++... |..| .||||+|+..|+.+++++|++++++.... ..|.||||+|+
T Consensus 93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~ 169 (285)
T 3kea_A 93 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITI 169 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--STHHHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--cCCccHHHHHH
Confidence 99999999999999999999999999988755 7777 89999999999999999999998875221 28999999999
Q ss_pred HcCcHHHHHHHHhcCCccccccCCCCchH-HHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTA-LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251 (537)
Q Consensus 173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L 251 (537)
..|+.+++++|+++++++... |..|+|| ||+|+.+|+.+++++|++.+ ++++..|. .|+..|+.+++++|
T Consensus 170 ~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~-------~a~~~~~~~iv~~L 240 (285)
T 3kea_A 170 KNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANL-------ENVLLDDAEIAKMI 240 (285)
T ss_dssp HTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTG-------GGGTTTCHHHHHHH
T ss_pred HcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCh-------hhhhcCCHHHHHHH
Confidence 999999999999998887654 8899998 99999999999999999997 88888873 56789999999999
Q ss_pred HhcCCCCcccCCC
Q 009344 252 LANSETNLNGVNR 264 (537)
Q Consensus 252 l~~~~~~~~~~d~ 264 (537)
+++| ++++..+.
T Consensus 241 l~~g-~~~~~~~~ 252 (285)
T 3kea_A 241 IEKH-VEYKSDSY 252 (285)
T ss_dssp HHHH-HHHTTCTT
T ss_pred HHcC-CCCCCccc
Confidence 9998 66655443
No 38
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-34 Score=281.88 Aligned_cols=267 Identities=18% Similarity=0.235 Sum_probs=222.1
Q ss_pred HHHHHcCCHHHHHHHHccCchhhH---hhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344 27 HSAARAGNLDEVKDILTGTEEAKL---KELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA 103 (537)
Q Consensus 27 h~Aa~~g~~~~v~~Ll~~~~~~~~---~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A 103 (537)
+.+++.|+.+.++.++....+... .......+..|.||||.||..|+.++|++|++.+ .+++..+..|.||||+|
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A 80 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQA 80 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHH
Confidence 357888888988888876543111 1112234557889999999999999999999987 78888999999999999
Q ss_pred HHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 009344 104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183 (537)
Q Consensus 104 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L 183 (537)
+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++++.+ .+..+.+|.||||+|+..|+.++++.+
T Consensus 81 ~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~l 158 (299)
T 1s70_B 81 CIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNE 158 (299)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHH
Confidence 9999999999999999887654 88999999999999999999999999988 577889999999999999999999998
Q ss_pred HhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCC
Q 009344 184 LAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVN 263 (537)
Q Consensus 184 l~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d 263 (537)
+..........+..+.++++ ..+..++..+.......+..|.||||+|+..|+.+++++|++++ ++++..|
T Consensus 159 l~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d 229 (299)
T 1s70_B 159 VNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKD 229 (299)
T ss_dssp HHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCC
T ss_pred HhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcC
Confidence 87543322222233333333 34455666666666778899999999999999999999999988 9999999
Q ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344 264 RTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL 306 (537)
Q Consensus 264 ~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~ 306 (537)
..|.||||+|+..|+.+++++|+++|++.......+.+|....
T Consensus 230 ~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272 (299)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999999999999999988877777775544
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-34 Score=286.92 Aligned_cols=249 Identities=16% Similarity=0.127 Sum_probs=192.3
Q ss_pred ccccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhccc-----------ccCCCCCHHHHHHHcCCHHHHH
Q 009344 10 KKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK-----------QNQSGETALYVAAEYGHVDLVA 78 (537)
Q Consensus 10 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~-----------~n~~g~TpLh~A~~~g~~~iv~ 78 (537)
.+..+.+.++..|.|++| |+.++|+.|++++.++....+... ......+.+|+|+..+..++++
T Consensus 40 ~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 114 (327)
T 1sw6_A 40 SSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVND 114 (327)
T ss_dssp TSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHH
T ss_pred hCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHH
Confidence 345567778889999988 999999999998865433222111 1111223458888888899999
Q ss_pred HHHHcCCcccccc-cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCC---HHHHHHHHHcCC
Q 009344 79 EMIKCYDLADAGI-KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGH---VEVLNFLIEAES 154 (537)
Q Consensus 79 ~Ll~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~---~~iv~~Ll~~~~ 154 (537)
.|++.+ .+++. +|..|.||||+|+..|+.+++++|++++++++.. |..|.||||+|+..|+ .++++.|++.+.
T Consensus 115 ~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~ 191 (327)
T 1sw6_A 115 AFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191 (327)
T ss_dssp HCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred HHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence 999876 78888 8999999999999999999999999999988754 8899999999999988 688888888875
Q ss_pred CcccccCCCCCcHHHHHHH----cCcHHHHHHHHhc--------------------CCccccccCCCCchHHHHHHhCCC
Q 009344 155 SLITISRSNGKTALHSAAR----NGRLEVLKTLLAA--------------------DSVIAIRTDKKGQTALHMAVKGQN 210 (537)
Q Consensus 155 ~~~~~~~~~g~tpLh~A~~----~g~~~~v~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~g~ 210 (537)
...+..|.+|+||||+|+. .|+.++++.|++. +.++.. .+..|.||||.|+.
T Consensus 192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~~~g~t~L~~a~~--- 267 (327)
T 1sw6_A 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND-KNGERKDSILENLD--- 267 (327)
T ss_dssp GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS---
T ss_pred ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc-ccccCCChhHHHHH---
Confidence 5578889999999999999 8999999999986 444443 48899999999986
Q ss_pred HHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 009344 211 IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTG 277 (537)
Q Consensus 211 ~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~ 277 (537)
+++|++. +++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.|
T Consensus 268 ---~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 268 ---LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp ---HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred ---HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence 8888887 58899999999999999999999999999998 999999999999999997653
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.5e-34 Score=272.16 Aligned_cols=222 Identities=24% Similarity=0.298 Sum_probs=118.7
Q ss_pred ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344 16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN 95 (537)
Q Consensus 16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 95 (537)
+.+|.+|+||||+|+..|+.++++.|++.+... ...++..|..|.||||+|+..|+.++|++|++.+ .+++.++..
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~ 77 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFR 77 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTT
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhcc--HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCC
Confidence 345556666666666666666666665554321 1124455555555555555555555555555544 444445555
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175 (537)
Q Consensus 96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g 175 (537)
|.||||+|+..|+.+++++|++.+++... .......+..|.||||+|+..|
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------------------~~~~~~~~~~g~t~L~~A~~~~ 128 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHL-----------------------------HSILKATNYNGHTCLHLASIHG 128 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSS-----------------------------SCGGGCCCTTCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhH-----------------------------HHHhhccCCCCCCHHHHHHHcC
Confidence 55555555555555555555554432100 0112334455566666666666
Q ss_pred cHHHHHHHHhcCCccccccCC-CCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344 176 RLEVLKTLLAADSVIAIRTDK-KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254 (537)
Q Consensus 176 ~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 254 (537)
+.+++++|++.++++... +. .|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|+++
T Consensus 129 ~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 206 (236)
T 1ikn_D 129 YLGIVELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206 (236)
T ss_dssp CHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHHHc
Confidence 666666666655555443 33 5666666666666666666666654 66666666666666666666666666666666
Q ss_pred CCCCcc--cCCCCCCCHHHHH
Q 009344 255 SETNLN--GVNRTGETALDTA 273 (537)
Q Consensus 255 ~~~~~~--~~d~~g~T~L~~A 273 (537)
| ++.. ..+..|.||.+.+
T Consensus 207 g-a~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 207 T-LENLQMLPESEDEESYDTE 226 (236)
T ss_dssp S-CGGGSSCCCCCTTTCCCCC
T ss_pred c-hhhhhcCCccchHHHHhhh
Confidence 6 4333 5566666665543
No 41
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5.1e-32 Score=250.33 Aligned_cols=192 Identities=22% Similarity=0.291 Sum_probs=95.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175 (537)
Q Consensus 96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g 175 (537)
+.||||.|+..|+.+.++.|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 334444444444444444444443322222234444444444444444444444444443 2334444445555555555
Q ss_pred cHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCC-----HHHHHH
Q 009344 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR-----EQIVRL 250 (537)
Q Consensus 176 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~-----~~iv~~ 250 (537)
+.+++++|++.+.......|..|.||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..++ .+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 555555555333322223345555555555555555555555555545555555555555555555554 555555
Q ss_pred HHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344 251 LLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289 (537)
Q Consensus 251 Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g 289 (537)
|+++| ++++.+|..|.||||+|+..++.+++++|+++|
T Consensus 164 Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 164 LMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 55555 555555555556666665555555555555544
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.9e-32 Score=257.99 Aligned_cols=210 Identities=25% Similarity=0.267 Sum_probs=145.5
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHc-CCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCccc----ccCCCCCChHH
Q 009344 60 SGETALYVAAEYGHVDLVAEMIKC-YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELA----MTVDLTNTTAL 134 (537)
Q Consensus 60 ~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~----~~~d~~g~t~L 134 (537)
.|+||||.|+..|+.++|++|++. + .+++.+|..|.||||+|+..|+.+++++|++.+++.. ...|..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEG--CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTC--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence 366777777777777777777765 3 5666667777777777777777777777777766542 22355677777
Q ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHH
Q 009344 135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVV 214 (537)
Q Consensus 135 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v 214 (537)
|+|+..|+.+++++|++++.+. +..+.. +.++ ......|..|.||||+|+..|+.+++
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~--~~~~-------------------~~~~~~~~~g~t~L~~A~~~~~~~~v 137 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGASV-SARATG--SVFH-------------------YRPHNLIYYGEHPLSFAACVGSEEIV 137 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCCS--GGGS-------------------CCTTCSCCCCSSHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCC-CcccCC--ccee-------------------ecccccccCCCCHHHHHHHcCCHHHH
Confidence 7777777777777777776653 222221 1110 01122356788888888888888888
Q ss_pred HHHHHhCCCCccccCCCCChHHHHHHHhCCHHHH----HHHHhcCCCCc------ccCCCCCCCHHHHHHHcCcHHHHHH
Q 009344 215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIV----RLLLANSETNL------NGVNRTGETALDTAEKTGHSNLAAL 284 (537)
Q Consensus 215 ~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv----~~Ll~~~~~~~------~~~d~~g~T~L~~A~~~~~~~i~~~ 284 (537)
++|++.+ ++++.+|.+|+||||+|+..++.+++ ++|++.+ ++. +..|..|.||||+|+..|+.+++++
T Consensus 138 ~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~ 215 (232)
T 2rfa_A 138 RLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215 (232)
T ss_dssp HHHHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 8888876 78888888888888888888888777 7888777 454 5778888888888888888888888
Q ss_pred HHHcChhhhhh
Q 009344 285 LREHGVESAKN 295 (537)
Q Consensus 285 L~~~g~~~~~~ 295 (537)
|+++|......
T Consensus 216 Ll~~g~~~~~~ 226 (232)
T 2rfa_A 216 LMQKRKHIAAA 226 (232)
T ss_dssp HHHHHHHC---
T ss_pred HHhcCccchhh
Confidence 88888765443
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.8e-33 Score=267.15 Aligned_cols=186 Identities=15% Similarity=0.182 Sum_probs=145.4
Q ss_pred cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc----cc
Q 009344 13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDL----AD 88 (537)
Q Consensus 13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~----~~ 88 (537)
...+.++..|.||||+|+..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+.. ..
T Consensus 36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 109 (236)
T 1ikn_D 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109 (236)
T ss_dssp CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG
T ss_pred HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHH
Confidence 35788999999999999999999999999999876 677899999999999999999999999998732 22
Q ss_pred ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHH
Q 009344 89 AGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTAL 168 (537)
Q Consensus 89 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 168 (537)
.+..+..|.||||+|+..|+.+++++|++.+++++...+..|.||||+|+..|+.+++++|+++|.+ .+..|..|.|||
T Consensus 110 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl 188 (236)
T 1ikn_D 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPY 188 (236)
T ss_dssp GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGG
T ss_pred hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHH
Confidence 4566777888888888888888888888887777655333777888888877777777777777766 466677777777
Q ss_pred HHHHHcCcHHHHHHHHhcCCccc-cccCCCCchHHHHH
Q 009344 169 HSAARNGRLEVLKTLLAADSVIA-IRTDKKGQTALHMA 205 (537)
Q Consensus 169 h~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~g~t~Lh~A 205 (537)
|+|+..|+.+++++|++++++.. ...+..|.|+...+
T Consensus 189 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp GGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred HHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence 77777777777777777776544 23455566655443
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=4.4e-32 Score=256.74 Aligned_cols=187 Identities=26% Similarity=0.301 Sum_probs=124.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc----cccCCCCCcHHHH
Q 009344 96 GFDAFHIAAKEGHLEVLKVLLAV-YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI----TISRSNGKTALHS 170 (537)
Q Consensus 96 g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpLh~ 170 (537)
|.||||.|+..|+.+++++|++. +.+++ ..|..|.||||+|+..|+.+++++|++.+++.. +..|.+|.||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 55666666666666666666665 33333 235566666666666666666666666655432 2334455555555
Q ss_pred HHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHH
Q 009344 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRL 250 (537)
Q Consensus 171 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~ 250 (537)
|+..|+.+++++|++++++.... +.. +.+ ....+..|..|+||||+|+..|+.+++++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~-~~~--~~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 139 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSAR-ATG--SVF-------------------HYRPHNLIYYGEHPLSFAACVGSEEIVRL 139 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCC-CCS--GGG-------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcc-cCC--cce-------------------eecccccccCCCCHHHHHHHcCCHHHHHH
Confidence 55555555555555555444322 111 100 01234455689999999999999999999
Q ss_pred HHhcCCCCcccCCCCCCCHHHHHHHcCcHHHH----HHHHHcChhh------hhhcCCCCCchHHH
Q 009344 251 LLANSETNLNGVNRTGETALDTAEKTGHSNLA----ALLREHGVES------AKNMKPQNNPAREL 306 (537)
Q Consensus 251 Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~----~~L~~~g~~~------~~~~~~~~~~~~~~ 306 (537)
|+++| ++++.+|..|.||||+|+..++.+++ ++|+++|++. ......+.+|....
T Consensus 140 Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A 204 (232)
T 2rfa_A 140 LIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204 (232)
T ss_dssp HHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH
T ss_pred HHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH
Confidence 99997 99999999999999999999999888 9999999976 34555666665543
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.3e-31 Score=247.54 Aligned_cols=194 Identities=22% Similarity=0.282 Sum_probs=155.6
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHH
Q 009344 59 QSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138 (537)
Q Consensus 59 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~ 138 (537)
..+.||||.|+..|+.+.++.|++.+. .+++..+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~ 80 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAG 80 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH
Confidence 456778888888888888888877642 366777777888888888888888888888887776544 677888888888
Q ss_pred HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC-----HHH
Q 009344 139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN-----IEV 213 (537)
Q Consensus 139 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~~ 213 (537)
..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.++.....+|..|+||||+|+..++ .++
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 888888888888666655677788888888888888888888888888744444558888888888888887 889
Q ss_pred HHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS 255 (537)
Q Consensus 214 v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~ 255 (537)
+++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 161 v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 161 VKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999887 888999999999999999999999999998765
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=7.5e-32 Score=259.29 Aligned_cols=208 Identities=21% Similarity=0.213 Sum_probs=144.7
Q ss_pred CCCHHHHHHHcCCHH----HHHHHHHcCCcccccc----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCcccccCCCC
Q 009344 61 GETALYVAAEYGHVD----LVAEMIKCYDLADAGI----KARNGFDAFHIAAKE---GHLEVLKVLLAVYPELAMTVDLT 129 (537)
Q Consensus 61 g~TpLh~A~~~g~~~----iv~~Ll~~~~~~~~~~----~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~ 129 (537)
|.||||.|+..|+.+ ++++|++.+ .+++. .|..|.||||+|+.. |+.+++++|++.+++......
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-- 77 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP-- 77 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC--
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh--
Confidence 566666666666665 344444444 44554 566666666666666 666666666665544331100
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccc------------cCCC
Q 009344 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR------------TDKK 197 (537)
Q Consensus 130 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------------~d~~ 197 (537)
++.. .....|..|.||||+|+..|+.+++++|+++++++... .|..
T Consensus 78 -------------------~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 135 (256)
T 2etb_A 78 -------------------LVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF 135 (256)
T ss_dssp -------------------GGGC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCS
T ss_pred -------------------hccc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccC
Confidence 0000 00012234555555555555555555555555444332 1224
Q ss_pred CchHHHHHHhCCCHHHHHHHHH---hCCCCccccCCCCChHHHHHHH--hCCHH-------HHHHHHhcCCCCc------
Q 009344 198 GQTALHMAVKGQNIEVVQELIK---AEPASVNMVDTKGNSPLHIATR--KGREQ-------IVRLLLANSETNL------ 259 (537)
Q Consensus 198 g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~i~~~d~~G~t~Lh~A~~--~~~~~-------iv~~Ll~~~~~~~------ 259 (537)
|.||||+|+..|+.+++++|++ .+ ++++.+|.+|+||||+|+. .++.+ ++++|+++| +++
T Consensus 136 g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~ 213 (256)
T 2etb_A 136 GELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQL 213 (256)
T ss_dssp CSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCG
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCccccccc
Confidence 9999999999999999999999 55 9999999999999999999 78888 999999998 888
Q ss_pred -ccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhc
Q 009344 260 -NGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM 296 (537)
Q Consensus 260 -~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~ 296 (537)
+.+|..|.||||+|+..|+.+++++|+++|.+.....
T Consensus 214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~ 251 (256)
T 2etb_A 214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAH 251 (256)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCcc
Confidence 8999999999999999999999999999998876543
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=9.5e-33 Score=275.55 Aligned_cols=258 Identities=17% Similarity=0.152 Sum_probs=202.3
Q ss_pred CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc--------
Q 009344 20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI-------- 91 (537)
Q Consensus 20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-------- 91 (537)
..+.+|+| ....++|++|+++|.+ ++..+..|.|+++ |+.++|+.|++++ .+.+.
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~ga~------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g--~~~~~~~~~~a~~ 83 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSSPLK------IMKALPSPVVNDN-----EQKMKLEAFLQRL--LFPEIQEMPTSLN 83 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTSSCC------CEECBCCCCCCCH-----HHHHHHHHHHHHH--HC-----------
T ss_pred cccccchh----hhcCchHHHHhhCCcc------cccCCCCCCcccC-----chhHHHHHHHHhc--cCCccccchHhhh
Confidence 45667777 4566789999999987 7888999999988 9999999999987 33322
Q ss_pred ---------cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Q 009344 92 ---------KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162 (537)
Q Consensus 92 ---------~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 162 (537)
......+.+|+|+..+..++++.|++.+.+++...|..|.||||+|+..|+.+++++|+++|++ ++..|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~ 162 (327)
T 1sw6_A 84 NDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDN 162 (327)
T ss_dssp --------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCT
T ss_pred cccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCC
Confidence 1111123458888888889999999999998875699999999999999999999999999988 578899
Q ss_pred CCCcHHHHHHHcCc---HHHHHHHHhcCCccccccCCCCchHHHHHHh----CCCHHHHHHHHHhC--------------
Q 009344 163 NGKTALHSAARNGR---LEVLKTLLAADSVIAIRTDKKGQTALHMAVK----GQNIEVVQELIKAE-------------- 221 (537)
Q Consensus 163 ~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~~-------------- 221 (537)
+|.||||+|+..|+ .++++.|++.+......+|..|+||||+|+. .|+.+++++|++.+
T Consensus 163 ~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~ 242 (327)
T 1sw6_A 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 242 (327)
T ss_dssp TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHh
Confidence 99999999999998 6788888887644455569999999999999 99999999999873
Q ss_pred -----CCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhc
Q 009344 222 -----PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM 296 (537)
Q Consensus 222 -----~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~ 296 (537)
+.+++.+|..|.||||.|+. +++|+++ +++.+|..|+||||+|+..|+.+++++|+++|++.....
T Consensus 243 ~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d 313 (327)
T 1sw6_A 243 GTNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 313 (327)
T ss_dssp C----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred hhhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 48899999999999999985 8899987 589999999999999999999999999999999998887
Q ss_pred CCCCCchH
Q 009344 297 KPQNNPAR 304 (537)
Q Consensus 297 ~~~~~~~~ 304 (537)
..+.+|..
T Consensus 314 ~~G~TpL~ 321 (327)
T 1sw6_A 314 KSGLRPVD 321 (327)
T ss_dssp TTSCCGGG
T ss_pred CCCCCHHH
Confidence 77777654
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.5e-31 Score=259.87 Aligned_cols=214 Identities=19% Similarity=0.238 Sum_probs=144.2
Q ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHcCC--ccccc----ccCCCCChHHHHHHHc---CCHHHHHHHHhcCCcccc
Q 009344 54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYD--LADAG----IKARNGFDAFHIAAKE---GHLEVLKVLLAVYPELAM 124 (537)
Q Consensus 54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~--~~~~~----~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~ 124 (537)
.+..|..|.||||.|+..|+.++|+.|++.+. ..+.+ ..+..|.||||+|+.. |+.+++++|++.+++...
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 34566677777777777777777776665321 12221 2355666666666654 666666666666543210
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCcccccc----------
Q 009344 125 TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT---------- 194 (537)
Q Consensus 125 ~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~---------- 194 (537)
++.++... ....|..|.||||+|+..|+.+++++|+++++++....
T Consensus 86 ---------------------~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~ 141 (273)
T 2pnn_A 86 ---------------------LKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKG 141 (273)
T ss_dssp ---------------------HHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSS
T ss_pred ---------------------hhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccc
Confidence 00011100 11133456666666666666666666666655544331
Q ss_pred ---CCCCchHHHHHHhCCCHHHHHHHHH---hCCCCccccCCCCChHHHHHHHhCC---------HHHHHHHHhcCCCCc
Q 009344 195 ---DKKGQTALHMAVKGQNIEVVQELIK---AEPASVNMVDTKGNSPLHIATRKGR---------EQIVRLLLANSETNL 259 (537)
Q Consensus 195 ---d~~g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~i~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~ 259 (537)
+..|.||||+|+..|+.+++++|++ .+ ++++.+|.+|+||||+|+..++ .+++++|+++| +++
T Consensus 142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~ 219 (273)
T 2pnn_A 142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKL 219 (273)
T ss_dssp SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhc
Confidence 2379999999999999999999999 55 8999999999999999999888 78999999988 777
Q ss_pred c-------cCCCCCCCHHHHHHHcCcHHHHHHHHHcCh-hhh
Q 009344 260 N-------GVNRTGETALDTAEKTGHSNLAALLREHGV-ESA 293 (537)
Q Consensus 260 ~-------~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~-~~~ 293 (537)
+ ..|..|.||||+|+..|+.+++++|+++|+ ++.
T Consensus 220 n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~ 261 (273)
T 2pnn_A 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE 261 (273)
T ss_dssp CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred ccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence 6 589999999999999999999999999998 443
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=6.6e-32 Score=262.33 Aligned_cols=231 Identities=20% Similarity=0.260 Sum_probs=145.5
Q ss_pred ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcc----cccCCCCCHHHHHHHc---CCHHHHHHHHHcCCc
Q 009344 14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLP----KQNQSGETALYVAAEY---GHVDLVAEMIKCYDL 86 (537)
Q Consensus 14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~----~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~ 86 (537)
..+..|..|.||||.||+.|+.++|+.|++.+.+.. ..++ ..|..|.||||+|+.. |+.++|++|++.+..
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK--KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC--CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc--cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 356788999999999999999999999998765421 1222 3478999999999987 999999999997621
Q ss_pred cc-----cc----ccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 009344 87 AD-----AG----IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI 157 (537)
Q Consensus 87 ~~-----~~----~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 157 (537)
.. ++ ..|..|.||||+|+..|+.+++++|++.+++++.. +..+. + .....
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~------------------~--~~~~~ 141 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDF------------------F--KKTKG 141 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGG------------------G--SSCSS
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-ccccc------------------c--ccccc
Confidence 10 11 13345556666666666666666666555554433 21100 0 00001
Q ss_pred cccCCCCCcHHHHHHHcCcHHHHHHHHh---cCCccccccCCCCchHHHHHHhCCC---------HHHHHHHHHhCCCCc
Q 009344 158 TISRSNGKTALHSAARNGRLEVLKTLLA---ADSVIAIRTDKKGQTALHMAVKGQN---------IEVVQELIKAEPASV 225 (537)
Q Consensus 158 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~i 225 (537)
...+..|.||||+|+..|+.+++++|++ .+.++.. +|..|+||||+|+..|+ .+++++|++.+ +++
T Consensus 142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~ 219 (273)
T 2pnn_A 142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKL 219 (273)
T ss_dssp SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhc
Confidence 1122367777777777777777777777 6666554 37777777777777766 67777888776 566
Q ss_pred c-------ccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCH
Q 009344 226 N-------MVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETA 269 (537)
Q Consensus 226 ~-------~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~ 269 (537)
+ .+|.+|+||||+|+..|+.+++++|+++|..++......+.+|
T Consensus 220 n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred ccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 4 4788888888888888888888888888854776666665554
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.9e-31 Score=255.19 Aligned_cols=207 Identities=22% Similarity=0.307 Sum_probs=146.7
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhccc----ccCCCCCHHHHHHHc---CCHHHHHHHHHcCCcccccc--
Q 009344 21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK----QNQSGETALYVAAEY---GHVDLVAEMIKCYDLADAGI-- 91 (537)
Q Consensus 21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~----~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~-- 91 (537)
.|.||||.||+.|+.+.|+.|++..... ..-++. .|..|.||||+|+.. |+.++|++|++.+ .+.+.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~~~~~ 76 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDSGNPK 76 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHTTCSS
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--Ccccchh
Confidence 4889999999999998665554421111 133555 799999999999999 9999999999976 33332
Q ss_pred ---------cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Q 009344 92 ---------KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162 (537)
Q Consensus 92 ---------~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 162 (537)
.|..|.||||+|+..|+.+++++|++.+++++.. |..+.++ .+ ....+.
T Consensus 77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~--------------------~~-~~~~~~ 134 (256)
T 2etb_A 77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQ--------------------KH-QGTCFY 134 (256)
T ss_dssp CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGS--------------------CC-SSSCCC
T ss_pred hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-ccccccc--------------------cc-cccccc
Confidence 2355777777777777777777777776665543 3221100 00 112223
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHh---cCCccccccCCCCchHHHHHHh--CCCHH-------HHHHHHHhCCCCc-----
Q 009344 163 NGKTALHSAARNGRLEVLKTLLA---ADSVIAIRTDKKGQTALHMAVK--GQNIE-------VVQELIKAEPASV----- 225 (537)
Q Consensus 163 ~g~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~g~~~-------~v~~Ll~~~~~~i----- 225 (537)
.|.||||+|+..|+.+++++|++ .+.++... |..|+||||+|+. .++.+ ++++|++.+ +++
T Consensus 135 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~ 212 (256)
T 2etb_A 135 FGELPLSLAACTKQWDVVTYLLENPHQPASLEAT-DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQ 212 (256)
T ss_dssp SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccccCCCcCcc-CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccc
Confidence 47777777777777777777777 66665543 7777777777777 67776 888888876 666
Q ss_pred --cccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344 226 --NMVDTKGNSPLHIATRKGREQIVRLLLANS 255 (537)
Q Consensus 226 --~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~ 255 (537)
+.+|..|+||||+|+..|+.+++++|++++
T Consensus 213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 788888999999999999999999988876
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=5.6e-30 Score=229.60 Aligned_cols=158 Identities=35% Similarity=0.535 Sum_probs=129.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI 211 (537)
Q Consensus 132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 211 (537)
++|+.|+..|+.++|+.|++.|++ ++..|.+|.||||+|+..++.++++.|++.+.++... |..|+||||+|+.+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~-d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh-ccCCCCHHHHHHHcCCH
Confidence 468888888888888888888877 5777888888888888888888888888888776554 78888888888888888
Q ss_pred HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344 212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291 (537)
Q Consensus 212 ~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~ 291 (537)
+++++|++.+ +++|.+|.+|+||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 84 ~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 84 EVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 8888888877 888888888888888888888888888888887 88888888888888888888888888888888887
Q ss_pred hh
Q 009344 292 SA 293 (537)
Q Consensus 292 ~~ 293 (537)
..
T Consensus 162 ie 163 (169)
T 4gpm_A 162 LE 163 (169)
T ss_dssp --
T ss_pred cC
Confidence 53
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.2e-30 Score=251.32 Aligned_cols=133 Identities=23% Similarity=0.278 Sum_probs=113.5
Q ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccC--------------CCCchHHHHHHhCCCHHHHHHHHH---hCC
Q 009344 160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTD--------------KKGQTALHMAVKGQNIEVVQELIK---AEP 222 (537)
Q Consensus 160 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~~v~~Ll~---~~~ 222 (537)
.|..|.||||+|+..|+.+++++|++.++++... + ..|+||||+|+..|+.+++++|++ .+
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g- 166 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ- 166 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-
Confidence 3446777777777777777777777777665544 3 579999999999999999999999 55
Q ss_pred CCccccCCCCChHHHHHHHhCC---------HHHHHHHHhcCCCCc-------ccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 009344 223 ASVNMVDTKGNSPLHIATRKGR---------EQIVRLLLANSETNL-------NGVNRTGETALDTAEKTGHSNLAALLR 286 (537)
Q Consensus 223 ~~i~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~-------~~~d~~g~T~L~~A~~~~~~~i~~~L~ 286 (537)
++++.+|.+|+||||+|+..++ .+++++|+++| +++ +..|..|.||||+|+..|+.+++++|+
T Consensus 167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 245 (260)
T 3jxi_A 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245 (260)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998887 79999999998 777 789999999999999999999999999
Q ss_pred HcChhhhhh
Q 009344 287 EHGVESAKN 295 (537)
Q Consensus 287 ~~g~~~~~~ 295 (537)
++|.+....
T Consensus 246 ~~g~~~~~~ 254 (260)
T 3jxi_A 246 RREIADAAA 254 (260)
T ss_dssp HHHHHHHC-
T ss_pred HhCCCcccc
Confidence 999887543
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.9e-29 Score=226.19 Aligned_cols=158 Identities=35% Similarity=0.478 Sum_probs=114.9
Q ss_pred cHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344 24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA 103 (537)
Q Consensus 24 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A 103 (537)
++|+.||+.|+.++|+.||+.|++ ++.+|..|.||||+|+..|+.+++++|++.+ .+++.+|.+|.||||+|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~~~~d~~g~TpLh~A 77 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD------VNASDSDGRTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDGRTPLHHA 77 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc--cchhhhccCCCCHHHHH
Confidence 357777777777777777777765 5667777777777777777777777777766 66777777777777777
Q ss_pred HHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 009344 104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183 (537)
Q Consensus 104 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L 183 (537)
+..|+.+++++|++++++++.. |..|.||||+|+..|+.+++++|++.+++ ++..|.+|+||||+|+..|+.+++++|
T Consensus 78 ~~~g~~~~v~~Ll~~gadvn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~L 155 (169)
T 4gpm_A 78 AENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLL 155 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 7777777777777777776544 66777777777777777777777777766 466677777777777777777777777
Q ss_pred HhcCCccc
Q 009344 184 LAADSVIA 191 (537)
Q Consensus 184 l~~~~~~~ 191 (537)
+++|+++.
T Consensus 156 l~~GA~ie 163 (169)
T 4gpm_A 156 EKQGGWLE 163 (169)
T ss_dssp HTC-----
T ss_pred HHCCCCcC
Confidence 77776653
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3.4e-30 Score=248.29 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=128.3
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHc----cCchhhHhhhcccccCCCCCHHHHHH---HcCCHHHHHHHHHcCCc-----
Q 009344 19 GKRDDTALHSAARAGNLDEVKDILT----GTEEAKLKELLPKQNQSGETALYVAA---EYGHVDLVAEMIKCYDL----- 86 (537)
Q Consensus 19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~ll~~~n~~g~TpLh~A~---~~g~~~iv~~Ll~~~~~----- 86 (537)
+..|.|+||.||+.|+.+.++.|++ .+.+.... ....+..|.||||+|+ +.|+.++|++|++.+..
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~--~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE--EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG--GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh--hhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 4678899999999999996666665 55542111 1123477999999999 67999999999987521
Q ss_pred ----ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Q 009344 87 ----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162 (537)
Q Consensus 87 ----~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 162 (537)
...+..|..|.||||+|+..|+.+++++|++.+++++.. +..+. .........+.
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~--------------------~~~~~~~~~~~ 138 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRF--------------------FQPKDEGGYFY 138 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECC--------------------CSSSCCCCSCC
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccc--------------------cCccccccccc
Confidence 112233345666666666666666666666666555433 20000 00000001113
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHh---cCCccccccCCCCchHHHHHHhCCC---------HHHHHHHHHhCCCCc-----
Q 009344 163 NGKTALHSAARNGRLEVLKTLLA---ADSVIAIRTDKKGQTALHMAVKGQN---------IEVVQELIKAEPASV----- 225 (537)
Q Consensus 163 ~g~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~i----- 225 (537)
.|.||||+|+..|+.+++++|++ .+.++... |..|+||||+|+..++ .+++++|++.+ +++
T Consensus 139 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~ 216 (260)
T 3jxi_A 139 FGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTN 216 (260)
T ss_dssp SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccccCCCCccc-CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccc
Confidence 55666666666666666666666 45544432 5566666666665554 46666666665 444
Q ss_pred --cccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344 226 --NMVDTKGNSPLHIATRKGREQIVRLLLANS 255 (537)
Q Consensus 226 --~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~ 255 (537)
+.+|.+|+||||+|+..|+.+++++|++++
T Consensus 217 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 557777777777777777777777777765
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=243.52 Aligned_cols=191 Identities=26% Similarity=0.360 Sum_probs=155.6
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH---
Q 009344 97 FDAFHIAAKEGHLEVLKVLLAVYPE-LAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA--- 172 (537)
Q Consensus 97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~--- 172 (537)
.+++|.|+..|+.+.++.+++...+ .....|..|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 4567788888888888888776544 122347788888888888888888888888887557778888888888888
Q ss_pred --HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHH
Q 009344 173 --RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRL 250 (537)
Q Consensus 173 --~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~ 250 (537)
..++.++++.|++.+..... .+..|+||||+|+..|+.+++++|++.+ +++|.+|.+|+||||+|+..|+.+++++
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~~iv~~ 234 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNINAK-ASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGHKEIAGL 234 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred hhhhhhHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 56788888888888765543 4778889999999989999999888887 8888888899999999999999999999
Q ss_pred HHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344 251 LLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289 (537)
Q Consensus 251 Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g 289 (537)
|++..+++++..|..|.||||+|+..|+.+++++|++++
T Consensus 235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 988444888888999999999999999999998888764
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=241.54 Aligned_cols=195 Identities=21% Similarity=0.258 Sum_probs=177.1
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHH-
Q 009344 60 SGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA- 138 (537)
Q Consensus 60 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~- 138 (537)
.+.+++|.|+..|+.+.++.+++.+....++..|.+|.||||+|+..|+.+++++|++.++......|..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 4678999999999999999999876434588899999999999999999999999999998444556899999999999
Q ss_pred ----HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHH
Q 009344 139 ----MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVV 214 (537)
Q Consensus 139 ----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v 214 (537)
..++.++++.|++.+.. ....+..|.||||+|+..|+.+++++|++.++++... |..|+||||+|+..|+.+++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHH
T ss_pred HHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHH
Confidence 66889999999999866 5677888999999999999999999999999987655 99999999999999999999
Q ss_pred HHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCC
Q 009344 215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256 (537)
Q Consensus 215 ~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~ 256 (537)
++|++..+++++.+|.+|+||||+|+..|+.+++++|+++.+
T Consensus 233 ~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 999994459999999999999999999999999999998864
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=5.2e-28 Score=217.70 Aligned_cols=160 Identities=25% Similarity=0.347 Sum_probs=76.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI 211 (537)
Q Consensus 132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 211 (537)
||||.|+..|+.++++.|++.+....+..|..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGGYT 82 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCH
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCCCH
Confidence 34444444444444444444444333444444444444444444444444444444433322 44444555555555555
Q ss_pred HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344 212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291 (537)
Q Consensus 212 ~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~ 291 (537)
+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|++
T Consensus 83 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 83 DIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160 (172)
T ss_dssp HHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence 5555555443 444555555555555555555555555555544 45555555555555555555555555555555554
Q ss_pred hhh
Q 009344 292 SAK 294 (537)
Q Consensus 292 ~~~ 294 (537)
...
T Consensus 161 ~~~ 163 (172)
T 3v30_A 161 LFQ 163 (172)
T ss_dssp HSC
T ss_pred Hhc
Confidence 433
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=6.4e-28 Score=217.09 Aligned_cols=170 Identities=25% Similarity=0.305 Sum_probs=152.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175 (537)
Q Consensus 96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g 175 (537)
+.+|||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 468999999999999999999999987777799999999999999999999999999988 6778899999999999999
Q ss_pred cHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS 255 (537)
Q Consensus 176 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~ 255 (537)
+.+++++|++++.++... |..|+||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+..++.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 999999999999887654 899999999999999999999999987 999999999999999999999999999999998
Q ss_pred CCCcccCCCCCCCH
Q 009344 256 ETNLNGVNRTGETA 269 (537)
Q Consensus 256 ~~~~~~~d~~g~T~ 269 (537)
.++...+..|.||
T Consensus 159 -~~~~~~~~~~~~p 171 (172)
T 3v30_A 159 -LKLFQSNLVPADP 171 (172)
T ss_dssp -HHHSCC-------
T ss_pred -HHHhcccCCCCCC
Confidence 7888888888876
No 59
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=5.3e-31 Score=266.07 Aligned_cols=157 Identities=25% Similarity=0.263 Sum_probs=74.6
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-ccccCCCCChH
Q 009344 21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD-AGIKARNGFDA 99 (537)
Q Consensus 21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~-~~~~~~~g~t~ 99 (537)
+++||||.||+.|+.++|++|++.+... ......|..|.||||+|+..|+.++|++|++++.... .+..+.+ .||
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~---~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSD---EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CC---SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcH---HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence 3445555555555555555555554311 0111223344555555555555555555555541100 1111222 555
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccc-cCCCCCChHHHHHH-HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344 100 FHIAAKEGHLEVLKVLLAVYPELAM-TVDLTNTTALHTAA-MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL 177 (537)
Q Consensus 100 Lh~A~~~g~~~iv~~Ll~~~~~~~~-~~d~~g~t~L~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~ 177 (537)
||+|+..|+.+++++|++++++... ..|..|.||||+|+ ..|+.+++++|++.+. .|.||||+|+..|+.
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~ 238 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEK 238 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCH
Confidence 5555555555555555555554332 12344555555555 5555555555555331 145555555555555
Q ss_pred HHHHHHHhcCCc
Q 009344 178 EVLKTLLAADSV 189 (537)
Q Consensus 178 ~~v~~Ll~~~~~ 189 (537)
+++++|++++++
T Consensus 239 evv~lL~~~ga~ 250 (376)
T 2aja_A 239 YVNPFIARHVNR 250 (376)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHhcCcc
Confidence 555555554443
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.9e-27 Score=212.92 Aligned_cols=163 Identities=25% Similarity=0.333 Sum_probs=140.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC
Q 009344 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208 (537)
Q Consensus 129 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 208 (537)
.|.||||.|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHc
Confidence 467888888888888888888888766 5677888888888888888888888888887776544 78889999999999
Q ss_pred CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288 (537)
Q Consensus 209 g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~ 288 (537)
|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++..|..|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 80 GYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp TCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999887 888999999999999999999999999999887 88999999999999999999999999999998
Q ss_pred Chhhhhh
Q 009344 289 GVESAKN 295 (537)
Q Consensus 289 g~~~~~~ 295 (537)
+.+...+
T Consensus 158 ~~~~~~~ 164 (167)
T 3v31_A 158 LLKLLQN 164 (167)
T ss_dssp HHHHCSS
T ss_pred HHHHHHH
Confidence 8776443
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1e-27 Score=213.41 Aligned_cols=159 Identities=30% Similarity=0.436 Sum_probs=127.5
Q ss_pred CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344 20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA 99 (537)
Q Consensus 20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 99 (537)
+...||||.|++.|+.+++++|++.+.+ ++..|..|.||||+|+. |+.+++++|++.+ .+++.++..|.||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~~~~~~~g~t~ 73 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVN------VNAQNGFGRTALQVMKL-GNPEIARRLLLRG--ANPDLKDRTGFAV 73 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCC------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCC------ccccCccCccHHHHHHc-CcHHHHHHHHHcC--CCCCCCCCCCCCH
Confidence 3467888888888888888888887765 56677888888888888 8888888888876 6777788888888
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHH
Q 009344 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179 (537)
Q Consensus 100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~ 179 (537)
||.|+..|+.+++++|++.+.+++.. |..|.||||+|+..|+.+++++|++.+++..+..+..|.||||+|+..|+.++
T Consensus 74 L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~ 152 (162)
T 1ihb_A 74 IHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152 (162)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 88888888888888888888776644 77788888888888888888888888877667777788888888888888888
Q ss_pred HHHHHhcCC
Q 009344 180 LKTLLAADS 188 (537)
Q Consensus 180 v~~Ll~~~~ 188 (537)
+++|+++|+
T Consensus 153 ~~~Ll~~GA 161 (162)
T 1ihb_A 153 VSLMQANGA 161 (162)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHhCC
Confidence 888887765
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=9.5e-28 Score=220.12 Aligned_cols=160 Identities=29% Similarity=0.351 Sum_probs=116.5
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHH
Q 009344 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA 205 (537)
Q Consensus 126 ~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 205 (537)
.|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A 108 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKTPLMWS 108 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHH
Confidence 356666777777777777777777766655 4555666777777777777777777777776665433 66777777777
Q ss_pred HhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 009344 206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL 285 (537)
Q Consensus 206 ~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L 285 (537)
+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..++.+++++|
T Consensus 109 ~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~L 186 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGRQEVIKIF 186 (192)
T ss_dssp HHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence 7777777777777765 777777777778888887777777887777776 77777777778888888777777777777
Q ss_pred HHcC
Q 009344 286 REHG 289 (537)
Q Consensus 286 ~~~g 289 (537)
+++|
T Consensus 187 l~~~ 190 (192)
T 2rfm_A 187 TEVR 190 (192)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7654
No 63
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.3e-27 Score=219.22 Aligned_cols=164 Identities=25% Similarity=0.292 Sum_probs=134.8
Q ss_pred hcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCh
Q 009344 53 LLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTT 132 (537)
Q Consensus 53 ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t 132 (537)
+++.+|..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.++++... |..|.|
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t 103 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKT 103 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCC
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCc
Confidence 36667888888888888888888888888876 677777888888888888888888888888888776644 778888
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHH
Q 009344 133 ALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIE 212 (537)
Q Consensus 133 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~ 212 (537)
|||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQE 181 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCcHH
Confidence 88888888888888888888777 5677888888888888888888888888888776544 788888888888888888
Q ss_pred HHHHHHHhC
Q 009344 213 VVQELIKAE 221 (537)
Q Consensus 213 ~v~~Ll~~~ 221 (537)
++++|++.+
T Consensus 182 ~v~~Ll~~~ 190 (192)
T 2rfm_A 182 VIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 888888754
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=2.5e-27 Score=212.12 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=129.2
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHH
Q 009344 21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAF 100 (537)
Q Consensus 21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L 100 (537)
.|.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+ .+++..+..|.|||
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L 73 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADPQLLGKGRESAL 73 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCcCCCCCcHH
Confidence 578888888888888888888887654 6777888888888888888888888888876 67777788888888
Q ss_pred HHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHH
Q 009344 101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVL 180 (537)
Q Consensus 101 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v 180 (537)
|.|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+.+ .+..|.+|.||||+|+..|+.+++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~ 151 (167)
T 3v31_A 74 SLACSKGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQ 151 (167)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHH
Confidence 8888888888888888888776644 77788888888888888888888887777 466777788888888888888888
Q ss_pred HHHHhcCCcc
Q 009344 181 KTLLAADSVI 190 (537)
Q Consensus 181 ~~Ll~~~~~~ 190 (537)
++|++++...
T Consensus 152 ~~L~~~~~~~ 161 (167)
T 3v31_A 152 QVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888765443
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=4.9e-27 Score=210.76 Aligned_cols=159 Identities=31% Similarity=0.467 Sum_probs=119.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHH
Q 009344 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206 (537)
Q Consensus 127 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 206 (537)
...+.++|+.|+..|+.+++++|++.+.+ .+..|.+|.||||+|+..|+.+++++|++.+.+.... |..|.||||+|+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~ 88 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAA 88 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHH
Confidence 34456777777777777777777777666 4556677777777777777777777777777665443 677788888888
Q ss_pred hCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 009344 207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286 (537)
Q Consensus 207 ~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~ 286 (537)
..|+.+++++|++.+ .+++..|.+|+||||+|+..++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+
T Consensus 89 ~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 888888888888776 777778888888888888888888888888776 778888888888888888888888888887
Q ss_pred HcC
Q 009344 287 EHG 289 (537)
Q Consensus 287 ~~g 289 (537)
+.|
T Consensus 167 ~~G 169 (169)
T 2y1l_E 167 KLN 169 (169)
T ss_dssp TC-
T ss_pred HcC
Confidence 765
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=2.4e-27 Score=210.98 Aligned_cols=158 Identities=28% Similarity=0.480 Sum_probs=104.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCC
Q 009344 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ 209 (537)
Q Consensus 130 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g 209 (537)
..||||.|+..|+.+++++|++.+.+ .+..+..|.||||+|+. |+.+++++|++.+.++... |..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcC
Confidence 34666666666666666666665555 35555666666666666 6666666666666554433 666677777777777
Q ss_pred CHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344 210 NIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289 (537)
Q Consensus 210 ~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g 289 (537)
+.+++++|++.+ .+++.+|.+|+||||+|+..|+.+++++|++++..+++..|..|.||||+|+..++.+++++|+++|
T Consensus 82 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 82 FLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 777777777665 6667777777777777777777777777777763335677777777777777777777777777776
Q ss_pred hh
Q 009344 290 VE 291 (537)
Q Consensus 290 ~~ 291 (537)
++
T Consensus 161 Ad 162 (162)
T 1ihb_A 161 AG 162 (162)
T ss_dssp --
T ss_pred CC
Confidence 53
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=4.8e-27 Score=210.84 Aligned_cols=161 Identities=31% Similarity=0.446 Sum_probs=116.7
Q ss_pred ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344 16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN 95 (537)
Q Consensus 16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 95 (537)
...+..+.++||.||+.|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+ .+.+..+..
T Consensus 8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~ 79 (169)
T 2y1l_E 8 HHHGSDLGKKLLEAARAGRDDEVRILMANGAD------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNG--ADVNAVDHA 79 (169)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTT
T ss_pred ccCCCcccchHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCC
Confidence 33455667788888888888888888877765 5667777888888888888888888888765 666777777
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344 96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175 (537)
Q Consensus 96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g 175 (537)
|.||||.|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++++.+ .+..|..|.||||+|+..|
T Consensus 80 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~ 157 (169)
T 2y1l_E 80 GMTPLRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNG 157 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhC
Confidence 777888777777777777777777766543 66677777777777777777777777766 4566667777777777777
Q ss_pred cHHHHHHHHhc
Q 009344 176 RLEVLKTLLAA 186 (537)
Q Consensus 176 ~~~~v~~Ll~~ 186 (537)
+.+++++|++.
T Consensus 158 ~~~~~~~L~~~ 168 (169)
T 2y1l_E 158 NEDLAEILQKL 168 (169)
T ss_dssp CHHHHHHHHTC
T ss_pred CHHHHHHHHHc
Confidence 77777777664
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=3.1e-27 Score=211.09 Aligned_cols=160 Identities=32% Similarity=0.394 Sum_probs=112.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHH
Q 009344 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206 (537)
Q Consensus 127 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 206 (537)
|..+.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.+.++... |..|+||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHH
Confidence 4455666666666666666666666555445555666667777777777777777777766665443 667777777777
Q ss_pred hCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 009344 207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286 (537)
Q Consensus 207 ~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~ 286 (537)
..|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++.+|..|.||||+|.. ++.+++++|+
T Consensus 84 ~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 84 SYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 777777777777766 777777777788888888888888888887776 7777778888888887665 7777888777
Q ss_pred HcCh
Q 009344 287 EHGV 290 (537)
Q Consensus 287 ~~g~ 290 (537)
++|+
T Consensus 161 ~~gA 164 (165)
T 3twr_A 161 GDAA 164 (165)
T ss_dssp TC--
T ss_pred hccc
Confidence 7764
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=8.9e-27 Score=211.14 Aligned_cols=164 Identities=24% Similarity=0.369 Sum_probs=131.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC
Q 009344 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208 (537)
Q Consensus 129 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 208 (537)
.+.++||.|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+.++... |..|+||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHc
Confidence 45677888888888888888888766666777778888888888888888888888887766544 77888888888888
Q ss_pred CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288 (537)
Q Consensus 209 g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~ 288 (537)
|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++..|..|.|||++|...++.+++++|+++
T Consensus 83 ~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~ 160 (179)
T 3f6q_A 83 GHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160 (179)
T ss_dssp TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 8888888888876 788888888888888888888888888888887 78888888888888888888888888888888
Q ss_pred Chhhhhh
Q 009344 289 GVESAKN 295 (537)
Q Consensus 289 g~~~~~~ 295 (537)
|++....
T Consensus 161 g~~~~~~ 167 (179)
T 3f6q_A 161 GQNLNRI 167 (179)
T ss_dssp TCCCSCB
T ss_pred hcCcccC
Confidence 8776543
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=6e-30 Score=241.68 Aligned_cols=180 Identities=21% Similarity=0.208 Sum_probs=82.7
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCc
Q 009344 97 FDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR 176 (537)
Q Consensus 97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~ 176 (537)
.||||.|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+
T Consensus 22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~g~ 99 (229)
T 2vge_A 22 LVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCND 99 (229)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence 33444444444444444444444333322 34444444444444444444444444443 33344444444444444444
Q ss_pred HHHHHHHHhcCCccccccCCCCchHHHHH--HhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344 177 LEVLKTLLAADSVIAIRTDKKGQTALHMA--VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254 (537)
Q Consensus 177 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 254 (537)
.+++++|++.++++....+..|+||||+| +..|+.+++++|++.+ ++++..|..|.||+|.++..... ++|++.
T Consensus 100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~---~~ll~~ 175 (229)
T 2vge_A 100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGD---ELSFRE 175 (229)
T ss_dssp HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTSGGGEEEESSCBCCSSTT---BCCBCT
T ss_pred HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccccCCchHHHHHHhhcccc---ccCccc
Confidence 44444444444444433234455555555 4555555555555544 44555555555555533332211 334444
Q ss_pred CCCC--cccCCCCCCCHHHHHHHcCcHHHHH
Q 009344 255 SETN--LNGVNRTGETALDTAEKTGHSNLAA 283 (537)
Q Consensus 255 ~~~~--~~~~d~~g~T~L~~A~~~~~~~i~~ 283 (537)
+ ++ ++.+|..|+||||+|+..|+.++++
T Consensus 176 g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 176 G-ESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp T-CEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred c-ccccccccCCCcccHHHHHHHcCCcceee
Confidence 3 33 4455555555555555555555443
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=3.4e-26 Score=201.68 Aligned_cols=150 Identities=28% Similarity=0.385 Sum_probs=95.8
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC
Q 009344 131 TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN 210 (537)
Q Consensus 131 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~ 210 (537)
.++||.|+..|+.+++++|++.+.+.. .+..|.||||+|+..|+.+++++|++.+.+.... |..|+||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCh
Confidence 355666666666666666666655421 3555666666666666666666666665554432 5666666666666666
Q ss_pred HHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 009344 211 IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL 285 (537)
Q Consensus 211 ~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L 285 (537)
.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++.+|..|.||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 66666666655 666666666777777777777777777776665 66666666777777777777776666655
No 72
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=3.5e-29 Score=252.75 Aligned_cols=241 Identities=21% Similarity=0.177 Sum_probs=179.3
Q ss_pred cHhHHHHH-cCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cccccCCCCChHHH
Q 009344 24 TALHSAAR-AGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLA-DAGIKARNGFDAFH 101 (537)
Q Consensus 24 t~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh 101 (537)
++++.|.. .++.+.++++++.+. ++.||||+|++.|+.++|++|++.+... .....+..|.||||
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g~-------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~ 133 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKGI-------------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR 133 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHTC-------------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCC-------------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHH
Confidence 46666665 466777777766543 4569999999999999999999987421 12234556889999
Q ss_pred HHHHcCCHHHHHHHHhcCCcccc-cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCcHHHHHH-HcCcHH
Q 009344 102 IAAKEGHLEVLKVLLAVYPELAM-TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLIT-ISRSNGKTALHSAA-RNGRLE 178 (537)
Q Consensus 102 ~A~~~g~~~iv~~Ll~~~~~~~~-~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpLh~A~-~~g~~~ 178 (537)
+|+.+|+.+++++|++++++... ..+..+.||||+|+..|+.+++++|++++++... ..|.+|.||||+|+ ..|+.+
T Consensus 134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e 213 (376)
T 2aja_A 134 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 213 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence 99999999999999999975211 0111228999999999999999999999987432 26778999999999 999999
Q ss_pred HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHh----------------
Q 009344 179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK---------------- 242 (537)
Q Consensus 179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~---------------- 242 (537)
++++|++.+. .|.||||+|+.+|+.+++++|++.+ ++++..|. +++.|+..
T Consensus 214 iv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~g-a~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~ 280 (376)
T 2aja_A 214 VINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHV-NRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFY 280 (376)
T ss_dssp HHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHH-HHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHH
T ss_pred HHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcC-cccccccH----HHHHHHHCCChhhhcHHhhhhhHH
Confidence 9999998652 2789999999999999999999876 44443321 22222222
Q ss_pred -----------CCHHHHHHHHhcCCCC----cccCCCCCCCHHHHHHHcCcHHHHHHHHHcCh
Q 009344 243 -----------GREQIVRLLLANSETN----LNGVNRTGETALDTAEKTGHSNLAALLREHGV 290 (537)
Q Consensus 243 -----------~~~~iv~~Ll~~~~~~----~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~ 290 (537)
+..+.+++|++.+..+ .....+.++||||+|+..|+.+++++|++.|.
T Consensus 281 ~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~ 343 (376)
T 2aja_A 281 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343 (376)
T ss_dssp HHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred HHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChH
Confidence 2345666776644221 12234567799999999999999999998764
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=2.1e-26 Score=208.72 Aligned_cols=168 Identities=23% Similarity=0.273 Sum_probs=121.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344 95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174 (537)
Q Consensus 95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 174 (537)
++.++||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 3556666666666666666666665544445566677777777777777777777777666 455666777777777777
Q ss_pred CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344 175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254 (537)
Q Consensus 175 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 254 (537)
|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|++.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~ 160 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777665543 777888888888888888888888876 77888888888888888888888888888887
Q ss_pred CCCCcccCCCCC
Q 009344 255 SETNLNGVNRTG 266 (537)
Q Consensus 255 ~~~~~~~~d~~g 266 (537)
+ ++++..+..+
T Consensus 161 g-~~~~~~~~~~ 171 (179)
T 3f6q_A 161 G-QNLNRIPYKD 171 (179)
T ss_dssp T-CCCSCBCCCC
T ss_pred h-cCcccCCccc
Confidence 7 7777666544
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=4.8e-26 Score=201.26 Aligned_cols=154 Identities=27% Similarity=0.392 Sum_probs=112.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCC
Q 009344 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ 209 (537)
Q Consensus 130 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g 209 (537)
+.||||.|+..|+.+++++|++......+..+..|.||||+ +..|+.+++++|++.+.++... |..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcC
Confidence 34677777777777777777776333355666677777777 7777777777777776665443 677777777777777
Q ss_pred CHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344 210 NIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288 (537)
Q Consensus 210 ~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~ 288 (537)
+.+++++|++.+ .+++.+|.+|+||||+|+..|+.+++++|++. ++++..|..|.||||+|+..++.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 777777777766 77777777777777777777777777777766 67777777777777777777777777777653
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=5.5e-26 Score=200.31 Aligned_cols=150 Identities=28% Similarity=0.357 Sum_probs=116.2
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCc
Q 009344 97 FDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR 176 (537)
Q Consensus 97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~ 176 (537)
.++||.|+..|+.+++++|++.+++.. .|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCh
Confidence 467777777777777777777776553 366677777777777777777777777766 45667778888888888888
Q ss_pred HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344 177 LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251 (537)
Q Consensus 177 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L 251 (537)
.+++++|+++++++... |..|+||||+|+.+|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 88888888877766544 778888888888888888888888876 78888888888888888888888888876
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=2e-26 Score=205.77 Aligned_cols=159 Identities=26% Similarity=0.349 Sum_probs=113.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344 93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA 172 (537)
Q Consensus 93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~ 172 (537)
+.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.+.+ .+..|.+|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHH
Confidence 445666666666666666666666655544444456667777777777777777777777666 4566667777777777
Q ss_pred HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252 (537)
Q Consensus 173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll 252 (537)
..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+. ++.+++++|+
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HcCcHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 777777777777777665543 777888888888888888888888776 7788888888888888665 7778888887
Q ss_pred hcC
Q 009344 253 ANS 255 (537)
Q Consensus 253 ~~~ 255 (537)
+.|
T Consensus 161 ~~g 163 (165)
T 3twr_A 161 GDA 163 (165)
T ss_dssp TC-
T ss_pred hcc
Confidence 765
No 77
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=4e-29 Score=236.02 Aligned_cols=204 Identities=18% Similarity=0.178 Sum_probs=169.1
Q ss_pred HHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 009344 38 VKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117 (537)
Q Consensus 38 v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~ 117 (537)
++.||+++.++ ...+..+..|.||||.|+..|+.++|++|++.+ .+++.+|..|.||||+|+..|+.+++++|++
T Consensus 1 v~~ll~~~~~~---~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 75 (229)
T 2vge_A 1 MRSVLRKAGSP---RKARRARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLIT 75 (229)
T ss_dssp ---------CC---CCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CeehhccCCCC---ccccccccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 46778877763 234566778889999999999999999999987 7888999999999999999999999999999
Q ss_pred cCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH--HHcCcHHHHHHHHhcCCccccccC
Q 009344 118 VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA--ARNGRLEVLKTLLAADSVIAIRTD 195 (537)
Q Consensus 118 ~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~d 195 (537)
.+.+++.. |..|.||||+|+..|+.+++++|++.+++.....+.+|.||||+| +..|+.+++++|++.+++.... |
T Consensus 76 ~ga~~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~-~ 153 (229)
T 2vge_A 76 AGANVNSP-DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-N 153 (229)
T ss_dssp TTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS-G
T ss_pred CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc-c
Confidence 99987755 889999999999999999999999999985444457999999999 9999999999999999887655 8
Q ss_pred CCCchHHHHHHhCCCHHHHHHHHHhCCCC--ccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344 196 KKGQTALHMAVKGQNIEVVQELIKAEPAS--VNMVDTKGNSPLHIATRKGREQIVRLLL 252 (537)
Q Consensus 196 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll 252 (537)
..|.||+|.++..+.. +.|++.+ ++ ++.+|.+|+||||+|+..|+.++|+.++
T Consensus 154 ~~~~~~l~~~~~~~~~---~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 154 SGAVYALWDYSAEFGD---ELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp GGEEEESSCBCCSSTT---BCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred CCchHHHHHHhhcccc---ccCcccc-ccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 8899999976655543 4566665 55 7889999999999999999999987654
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=1.1e-25 Score=198.81 Aligned_cols=151 Identities=26% Similarity=0.392 Sum_probs=75.0
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344 98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL 177 (537)
Q Consensus 98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~ 177 (537)
||||.|+..|+.+++++|++..+......|..|.||||+ +..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcH
Confidence 344444444444444444444111122223444444444 444444444444444443 234444455555555555555
Q ss_pred HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHh
Q 009344 178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253 (537)
Q Consensus 178 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~ 253 (537)
+++++|++.+.++... |..|+||||+|+..|+.+++++|++. .+++.+|.+|+||||+|+..|+.+++++|++
T Consensus 82 ~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 82 DTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCc-CCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 5555555554443322 45555555555555555555555554 5555556666666666666666666666554
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=3.2e-26 Score=217.70 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=100.4
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHH
Q 009344 59 QSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138 (537)
Q Consensus 59 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~ 138 (537)
..|.||||.|++.|+.++++.|++++ .+.+. +..|.||||.|+..|+.+++++|++.+++++.. |..|.||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHH
Confidence 45777777777777777777777766 44443 356777777777777777777777777765543 667777777777
Q ss_pred HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHH--HhCCCHHHHHH
Q 009344 139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA--VKGQNIEVVQE 216 (537)
Q Consensus 139 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~~v~~ 216 (537)
..|+.+++++|++++.+ .+..|.+|.||||+|+..|+.+++++|+++++++....+..++||||+| +..|+.+++++
T Consensus 79 ~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 77777777777777766 4666777777777777777777777777777766554223333777777 66677777777
Q ss_pred HHHhCCCCcccc---------CCCCChHHHHHHHhCC
Q 009344 217 LIKAEPASVNMV---------DTKGNSPLHIATRKGR 244 (537)
Q Consensus 217 Ll~~~~~~i~~~---------d~~G~t~Lh~A~~~~~ 244 (537)
|++.+ ++++.. |..+.++++++...|.
T Consensus 158 Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 158 LYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence 77765 444433 4556666666665554
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=3.1e-26 Score=217.76 Aligned_cols=179 Identities=17% Similarity=0.208 Sum_probs=117.9
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH
Q 009344 94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173 (537)
Q Consensus 94 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~ 173 (537)
..|.||||.|++.|+.++++.|++++.++.. +..|.||||.|+..|+.+++++|++.+.+ .+..|.+|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 4588899999988888888888888887754 45678889999988888999888888876 67778888888888888
Q ss_pred cCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCC-hHHHHH--HHhCCHHHHHH
Q 009344 174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN-SPLHIA--TRKGREQIVRL 250 (537)
Q Consensus 174 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~-t~Lh~A--~~~~~~~iv~~ 250 (537)
.|+.+++++|+++++++... |..|+||||+|+..|+.+++++|++.+ ++++.+|..|. ||||+| +..|+.+++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 88888888888888776554 788888888888888888888888887 88888887776 888888 77788888888
Q ss_pred HHhcCCCCcccC---------CCCCCCHHHHHHHcCc
Q 009344 251 LLANSETNLNGV---------NRTGETALDTAEKTGH 278 (537)
Q Consensus 251 Ll~~~~~~~~~~---------d~~g~T~L~~A~~~~~ 278 (537)
|++.+ ++++.. +..+.++++++...|.
T Consensus 158 Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 158 LYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence 88876 565554 5567777777766553
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=6.3e-24 Score=183.18 Aligned_cols=131 Identities=23% Similarity=0.327 Sum_probs=113.0
Q ss_pred ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCC-CChH
Q 009344 157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK-GNSP 235 (537)
Q Consensus 157 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~-G~t~ 235 (537)
.+..+..|.||||+|+..|+.+++++|++.+.++... |..|+||||+|+. |+.+++++|++.+ .+++.+|.. |+||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTRP 81 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBCH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCCH
Confidence 5667788888888888888888888888888776544 7888899999988 9999999999887 888888888 8999
Q ss_pred HHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344 236 LHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291 (537)
Q Consensus 236 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~ 291 (537)
||+|+..|+.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999887 88899999999999999999999999999888864
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=1.2e-23 Score=181.41 Aligned_cols=131 Identities=23% Similarity=0.299 Sum_probs=92.3
Q ss_pred ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC
Q 009344 14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA 93 (537)
Q Consensus 14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 93 (537)
+.+.++..|.||||.|++.|+.+++++|++.+.+ ++.+|..|.||||+|+. |+.+++++|++.+ .+++.++
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~~~~~ 74 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD------PNALNRFGRRPIQVMMM-GSAQVAELLLLHG--AEPNCAD 74 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT--CCSSCCB
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC--CCCCCcC
Confidence 4566677777777777777777777777776654 55666777777777777 7777777777765 5666667
Q ss_pred CC-CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 009344 94 RN-GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154 (537)
Q Consensus 94 ~~-g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 154 (537)
.. |.||||+|+..|+.+++++|++.++++... |..|.||||+|+..++.+++++|+++|+
T Consensus 75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCC-SSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 66 777777777777777777777777665543 5667777777777777777777776654
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=4e-24 Score=194.68 Aligned_cols=157 Identities=16% Similarity=0.111 Sum_probs=114.3
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH----HHHHHHHhcCCccccccCCCCchHHHHHH
Q 009344 131 TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL----EVLKTLLAADSVIAIRTDKKGQTALHMAV 206 (537)
Q Consensus 131 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 206 (537)
.++|+.|+..|+.+.++.+++.+... ..+..|+||||+|+..|+. +++++|+++|+++... |..|+||||+|+
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~TpLh~a~ 83 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR-TKEGTTLFFPLF 83 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC-CTTCCCTHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC-CCCCCcHHHHHH
Confidence 45666777777777666666655331 1124567777777776653 4677777777666544 677777777777
Q ss_pred hCCC------HHHHHHHHHhCCCCccccCCCCC-hHHHHHHHhC-----CHHHHHHHHh-cCCCCcccCCCCCCCHHHHH
Q 009344 207 KGQN------IEVVQELIKAEPASVNMVDTKGN-SPLHIATRKG-----REQIVRLLLA-NSETNLNGVNRTGETALDTA 273 (537)
Q Consensus 207 ~~g~------~~~v~~Ll~~~~~~i~~~d~~G~-t~Lh~A~~~~-----~~~iv~~Ll~-~~~~~~~~~d~~g~T~L~~A 273 (537)
..++ .+++++|++.+ +++|.+|..|+ ||||+|+..+ ..+++++|++ +| ++++.+|..|.||||+|
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHH
Confidence 6665 57788888887 88888888888 8899888843 3568888888 55 88999999999999999
Q ss_pred HHcCcHHHHHHHHHcChhh
Q 009344 274 EKTGHSNLAALLREHGVES 292 (537)
Q Consensus 274 ~~~~~~~i~~~L~~~g~~~ 292 (537)
.+.++.+++++|.+...+.
T Consensus 162 ~~~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIKKY 180 (186)
T ss_dssp HTTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999888888765443
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=1.1e-23 Score=186.10 Aligned_cols=142 Identities=24% Similarity=0.282 Sum_probs=102.5
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCch-HHHHH
Q 009344 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQT-ALHMA 205 (537)
Q Consensus 127 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~Lh~A 205 (537)
+..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+ .|+.+++++|++.+.++... |..|+| |||+|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~-d~~g~ttpL~~A 85 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPVHDA 85 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHH
Confidence 56678888888888888888888887766 5667778888888874 78888888888887776544 778888 88888
Q ss_pred HhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 009344 206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273 (537)
Q Consensus 206 ~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A 273 (537)
+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++| ++++..|..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence 8888888888888887 888888888999999999999999999988887 88888888888887643
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.7e-23 Score=184.97 Aligned_cols=142 Identities=22% Similarity=0.237 Sum_probs=88.0
Q ss_pred cCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCC
Q 009344 17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNG 96 (537)
Q Consensus 17 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g 96 (537)
..++.|.||||+|++.|+.++|++|++.+.+ ++..|..|.||||+|+ .|+.+++++|++.+ .+++.++..|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g--~~~~~~d~~g 77 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGAN------PNAPNSYGRRPIQVMM-MGSARVAELLLLHG--AEPNCADPAT 77 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT--CCCCCCCTTT
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC--CCCCCcCCCC
Confidence 4456677777777777777777777776654 5566677777777764 67777777777765 6666677777
Q ss_pred Ch-HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHH
Q 009344 97 FD-AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALH 169 (537)
Q Consensus 97 ~t-~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh 169 (537)
.| |||+|+..|+.+++++|++++.+++.. |..|.||||+|+..|+.+++++|+++|.+ .+..+..|.||.+
T Consensus 78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 78 LTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARIDAAE 149 (156)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCcCcCcccc
Confidence 77 777777777777777777776665543 66677777777777777777777776666 4555666666655
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=8.1e-24 Score=192.63 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=101.2
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCH----HHHHHHHHcCCCcccccCCCCCcHHHHHHH
Q 009344 98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV----EVLNFLIEAESSLITISRSNGKTALHSAAR 173 (537)
Q Consensus 98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~ 173 (537)
++|+.|++.|+.+.++.+++.+++.. .+..|.||||+|+..|+. +++++|+++|++ ++..|.+|+||||+|+.
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHH
Confidence 44555555555555555555443221 113455555555555543 356666666655 45555666666666666
Q ss_pred cCc------HHHHHHHHhcCCccccccCCCCc-hHHHHHHhCC-----CHHHHHHHHH-hCCCCccccCCCCChHHHHHH
Q 009344 174 NGR------LEVLKTLLAADSVIAIRTDKKGQ-TALHMAVKGQ-----NIEVVQELIK-AEPASVNMVDTKGNSPLHIAT 240 (537)
Q Consensus 174 ~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~g-----~~~~v~~Ll~-~~~~~i~~~d~~G~t~Lh~A~ 240 (537)
.|+ .+++++|+++|+++... |..|+ ||||+|+..+ ..+++++|++ .+ ++++.+|..|+||||+|+
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A~ 162 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFVK 162 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHHH
Confidence 554 46677777777766554 66777 7777777743 3467888888 55 888888888888888888
Q ss_pred HhCCHHHHHHHHhcCCCCcccCC
Q 009344 241 RKGREQIVRLLLANSETNLNGVN 263 (537)
Q Consensus 241 ~~~~~~iv~~Ll~~~~~~~~~~d 263 (537)
..++.+++++|.+.. .+.+.++
T Consensus 163 ~~~~~~~v~~L~~~~-~~~~~~~ 184 (186)
T 3t8k_A 163 RCQKPIALKMMEDYI-KKYNLKE 184 (186)
T ss_dssp TTTCHHHHHHHHHHH-HHHTCCC
T ss_pred HcCCHHHHHHHHHHH-HHHhccc
Confidence 888888888888765 3444443
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.88 E-value=2.4e-22 Score=170.10 Aligned_cols=126 Identities=44% Similarity=0.706 Sum_probs=94.1
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHh
Q 009344 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK 242 (537)
Q Consensus 163 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~ 242 (537)
+|.||||+|+..|+.+++++|++.+.+.... |..|.||||+|+..++.+++++|++.+ .+++.+|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHc
Confidence 3667777777777777777777766655433 667777777777777777777777765 67777777778888888888
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344 243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291 (537)
Q Consensus 243 ~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~ 291 (537)
++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 8888888877776 77777777788888888888888888888777763
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=1.5e-22 Score=174.46 Aligned_cols=125 Identities=32% Similarity=0.485 Sum_probs=91.0
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q 009344 162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241 (537)
Q Consensus 162 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~ 241 (537)
..+.||||+|+..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHH
Confidence 44567777777777777777777776665433 667777777777777777777777765 6777777777777777777
Q ss_pred hCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344 242 KGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289 (537)
Q Consensus 242 ~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g 289 (537)
.++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|
T Consensus 90 ~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 77777777777776 777777777777777777777777777777665
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=1.4e-22 Score=174.64 Aligned_cols=126 Identities=30% Similarity=0.432 Sum_probs=84.9
Q ss_pred CCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCC
Q 009344 18 TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGF 97 (537)
Q Consensus 18 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~ 97 (537)
....+.||||+||+.|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+ .+++..|..|.
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~d~~g~ 81 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGAD------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG--ADVNAVDAIGF 81 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCC
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCC
Confidence 344566777777777777777777776654 5556667777777777777777777777765 56666666777
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 009344 98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152 (537)
Q Consensus 98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ 152 (537)
||||+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++.
T Consensus 82 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcCc-CCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 7777777777777777777766665433 56666777777777777777666654
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.88 E-value=5.4e-22 Score=167.96 Aligned_cols=125 Identities=38% Similarity=0.602 Sum_probs=87.0
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHH
Q 009344 21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAF 100 (537)
Q Consensus 21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L 100 (537)
+|.||||.|++.|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+ .+++.++..|.|||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~l 72 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPL 72 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC--CCCcccCCCCCcHH
Confidence 467777777777777777777776654 4556667777777777777777777777765 56666666777777
Q ss_pred HHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 009344 101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154 (537)
Q Consensus 101 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 154 (537)
|+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|+++|+
T Consensus 73 ~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 73 HLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHcChHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 7777777777777777776665533 5666777777777777777777776654
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=1.9e-23 Score=199.13 Aligned_cols=170 Identities=18% Similarity=0.114 Sum_probs=116.0
Q ss_pred CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344 20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA 99 (537)
Q Consensus 20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 99 (537)
..+.+++..++..|+.+.+..+...+. ..+..|.||||.|+..|+.++|+.|++ + .+++.+|..|.||
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~---------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~ 80 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAA---------DVVSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTA 80 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCH---------HHHHHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBH
T ss_pred CCCccHHHHHHHcCCCccccccccccc---------ccccCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCH
Confidence 345556666666666555444332221 234567888888888888888888887 4 6777778888888
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHH
Q 009344 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179 (537)
Q Consensus 100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~ 179 (537)
||+|+..|+.+++++|++.+++++...+..|.||||+|+..|+.+++++|++++++ .+..|..|.||||+|+..++
T Consensus 81 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~--- 156 (244)
T 3ui2_A 81 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK--- 156 (244)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT---
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh---
Confidence 88888888888888888888777666446777888888888888888888887776 46677777777777764211
Q ss_pred HHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHh
Q 009344 180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA 220 (537)
Q Consensus 180 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ 220 (537)
...+.||||+|+..|+.+++++|++.
T Consensus 157 ---------------~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 157 ---------------TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp ---------------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 23455566666666666666655553
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=2.4e-22 Score=173.34 Aligned_cols=129 Identities=30% Similarity=0.417 Sum_probs=102.6
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q 009344 159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHI 238 (537)
Q Consensus 159 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~ 238 (537)
..|.+|.||||+|+..|+.+++++|++.+.++.. .|..|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCCCHHHH
Confidence 4567788888888888888888888888776654 3778888888888888888888888876 7888888888888888
Q ss_pred HHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcCh
Q 009344 239 ATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290 (537)
Q Consensus 239 A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~ 290 (537)
|+..++.+++++|++++ ++++.+|..|.||+|+|...+..+++++|.+.+.
T Consensus 83 A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 88888888888888886 8888888888888888888777777777665543
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=9.7e-22 Score=178.58 Aligned_cols=139 Identities=23% Similarity=0.279 Sum_probs=82.3
Q ss_pred CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC-CCCCh
Q 009344 20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA-RNGFD 98 (537)
Q Consensus 20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t 98 (537)
..|.||||.|++.|+.++++.|++ +.+ ++.+|..|.||||+|+..|+.+++++|++.+ .+++.++ ..|.|
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~~g~t 112 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRD------VDAVDENGRTALLFVAGLGSDKCVRLLAEAG--ADLDHRDMRGGLT 112 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCSSSSCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCC
Confidence 355666666666666666666666 433 4555666666666666666666666666655 4555555 55666
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH
Q 009344 99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE 178 (537)
Q Consensus 99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~ 178 (537)
|||+|+..|+.+++++|+++++++... |..|.||||+|+..++. ..+.+||++|+..|+.+
T Consensus 113 pL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~ 173 (183)
T 3deo_A 113 ALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEK 173 (183)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHH
Confidence 666666666666666666666555433 55666666666543211 22455666666666666
Q ss_pred HHHHHHhc
Q 009344 179 VLKTLLAA 186 (537)
Q Consensus 179 ~v~~Ll~~ 186 (537)
+++.|.++
T Consensus 174 i~~~L~~~ 181 (183)
T 3deo_A 174 VINVLEGQ 181 (183)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 66665543
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=3.3e-21 Score=175.05 Aligned_cols=140 Identities=25% Similarity=0.311 Sum_probs=97.0
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHh
Q 009344 128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK 207 (537)
Q Consensus 128 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 207 (537)
..|.||||+|+..|+.++++.|++ +.+ .+..|.+|.||||+|+..|+.+++++|+++++++....+..|+||||+|+.
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 345667777777777777777766 444 455666777777777777777777777777766655533677777777777
Q ss_pred CCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344 208 GQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287 (537)
Q Consensus 208 ~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~ 287 (537)
.|+.+++++|++.+ ++++.+|.+|+||||+|+..++. ..+.++|++|+..|..+++++|.+
T Consensus 120 ~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 120 YVRPEVVEALVELG-ADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp TTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence 77777777777776 77777777777777777764321 345677777777777777777765
Q ss_pred c
Q 009344 288 H 288 (537)
Q Consensus 288 ~ 288 (537)
+
T Consensus 181 ~ 181 (183)
T 3deo_A 181 Q 181 (183)
T ss_dssp C
T ss_pred h
Confidence 3
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=2.7e-21 Score=184.15 Aligned_cols=143 Identities=25% Similarity=0.306 Sum_probs=106.0
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHh
Q 009344 128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK 207 (537)
Q Consensus 128 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 207 (537)
..|.||||+|+..|+.++++.|++ +.+ ++..|..|.||||+|+..|+.+++++|+++++++....+..|+||||+|+.
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 346677777777777777777777 544 566677777777777777777777777777777665534678888888888
Q ss_pred CCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344 208 GQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287 (537)
Q Consensus 208 ~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~ 287 (537)
.|+.+++++|++.+ ++++.+|..|+||||+|+..++ +..+.|||++|+..|+.+++++|.+
T Consensus 121 ~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 121 YVRPEVVEALVELG-ADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp TTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence 88888888888876 7888888888888888875221 2457788888888888888888887
Q ss_pred cChh
Q 009344 288 HGVE 291 (537)
Q Consensus 288 ~g~~ 291 (537)
++.+
T Consensus 182 ~~~~ 185 (244)
T 3ui2_A 182 QVFE 185 (244)
T ss_dssp HHEE
T ss_pred hccc
Confidence 6544
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=7.9e-22 Score=170.08 Aligned_cols=127 Identities=21% Similarity=0.288 Sum_probs=79.1
Q ss_pred cCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCC
Q 009344 17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNG 96 (537)
Q Consensus 17 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g 96 (537)
.+|.+|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+ .+++.++..|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g 76 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD------PNVKDHAGWTPLHEACNHGHLKVVELLLQHK--ALVNTTGYQN 76 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCGGG
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CcccCcCCCC
Confidence 4566666777777776777777666666554 4556666666666666666666666666655 5556666666
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 009344 97 FDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152 (537)
Q Consensus 97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ 152 (537)
.||||+|+..|+.+++++|++.++++... |..|.||||+|+..+..+++++|.+.
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhccHHHHHhhcccc
Confidence 66666666666666666666666655433 55666666666665555555555443
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=4.7e-21 Score=161.94 Aligned_cols=111 Identities=25% Similarity=0.326 Sum_probs=89.9
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q 009344 161 RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT 240 (537)
Q Consensus 161 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~ 240 (537)
+..|.||||+|+..|+.++++.|++.+.++.. .|..|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS-CCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence 34567888888888888888888887776554 3778888888888888888888888876 788888888888888888
Q ss_pred HhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 009344 241 RKGREQIVRLLLANSETNLNGVNRTGETALDTAE 274 (537)
Q Consensus 241 ~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~ 274 (537)
..++.+++++|++++ ++++..|..|.||||+|.
T Consensus 82 ~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCC
T ss_pred HcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhC
Confidence 888888888888886 888888888888888884
No 98
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=1.7e-20 Score=182.06 Aligned_cols=195 Identities=17% Similarity=0.223 Sum_probs=140.5
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH
Q 009344 92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA 171 (537)
Q Consensus 92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A 171 (537)
.|..+.+.++.+...|+..+.+.+...-+.........+....+ ....-..+++................++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 56677788888888888766655544333221100011111111 11111112222222211111122235688999
Q ss_pred HHcCcHHHHHHHHhcCCccccc-----cCCCCchHHHHHHhC---CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhC
Q 009344 172 ARNGRLEVLKTLLAADSVIAIR-----TDKKGQTALHMAVKG---QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG 243 (537)
Q Consensus 172 ~~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~ 243 (537)
+..|+.+.+..+++.+.+.... .|..|+||||+|+.. |+.+++++|++.+ +++|.+|.+|+||||+|+..|
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpLh~A~~~g 216 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHYCCLTD 216 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHHHHHTT
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHHHHHHHcC
Confidence 9999999999999888875433 378899999999998 8999999999997 899999999999999999999
Q ss_pred CHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344 244 REQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292 (537)
Q Consensus 244 ~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~ 292 (537)
+.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 217 ~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 217 NAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999987 899999999999999999999999999999998864
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=184.12 Aligned_cols=141 Identities=20% Similarity=0.195 Sum_probs=112.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCcccc-----cCCCCCcHHHHHHHc---CcHHHHHHHHhcCCccccccCCCCchH
Q 009344 130 NTTALHTAAMQGHVEVLNFLIEAESSLITI-----SRSNGKTALHSAARN---GRLEVLKTLLAADSVIAIRTDKKGQTA 201 (537)
Q Consensus 130 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 201 (537)
..++|+.|+..|+.+.++.|++.+.++... .+..|.||||+|+.. |+.+++++|++.++++... |..|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCCCCCH
Confidence 457788888888888888888888774332 577888999999986 8899999999988876654 8889999
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcH
Q 009344 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHS 279 (537)
Q Consensus 202 Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~ 279 (537)
||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+..++.+++++|++.+ ++ .|.||||+|+..|+.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC--------
T ss_pred HHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHhcCCc
Confidence 99999999999999999887 889999999999999999999999999999887 33 578999999887754
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=5.5e-21 Score=187.66 Aligned_cols=139 Identities=19% Similarity=0.151 Sum_probs=60.0
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcccccc----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCcccccCCCCCChHH
Q 009344 62 ETALYVAAEYGHVDLVAEMIKCYDLADAGI----KARNGFDAFHIAAKE---GHLEVLKVLLAVYPELAMTVDLTNTTAL 134 (537)
Q Consensus 62 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~----~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~L 134 (537)
.++|+.|+..|+.+.|+.|++.+...+... .+..|.||||+|+.. |+.+++++|++.+++++.. |..|.|||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~G~TpL 230 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTAL 230 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTTCCCHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCCCCCHH
Confidence 344444444444444444444443322110 234444444444443 4444444444444443322 44444444
Q ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCC
Q 009344 135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ 209 (537)
Q Consensus 135 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g 209 (537)
|+|+..|+.+++++|++.+++ .+..|.+|.||||+|+..|+.+++++|++.+++ .|.||||+|+..|
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g 297 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWV 297 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC------
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcC
Confidence 444444444444444444444 334444444555555544455555544444332 2344555554444
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.83 E-value=7e-21 Score=160.89 Aligned_cols=111 Identities=24% Similarity=0.354 Sum_probs=73.3
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCCh
Q 009344 19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFD 98 (537)
Q Consensus 19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 98 (537)
+..|+||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+ .+++.+|..|.|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~d~~g~t 75 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED------VNRTLEGGRKPLHYAADCGQLEILEFLLLKG--ADINAPDKHHIT 75 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTSCC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCC
Confidence 45566777777777777777777766654 5556666777777777777777777777655 566666666777
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHH
Q 009344 99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138 (537)
Q Consensus 99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~ 138 (537)
|||+|+..|+.+++++|++.++++... |..|.||||+|.
T Consensus 76 pL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~ 114 (123)
T 3aaa_C 76 PLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATD 114 (123)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHhC
Confidence 777777777777777777666665433 666666666663
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=5.1e-21 Score=179.43 Aligned_cols=133 Identities=27% Similarity=0.320 Sum_probs=99.8
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q 009344 161 RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT 240 (537)
Q Consensus 161 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~ 240 (537)
+.+|.||||+|+..|+.++++.|++.+.++.. +|..|+||||+|+..|+.+++++|++..+.+++.+|..|+||||+|+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 45577888888888888888888887766554 37788888888888888888888888745888888888888888888
Q ss_pred HhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344 241 RKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKN 295 (537)
Q Consensus 241 ~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~ 295 (537)
..|+.+++++|+++| ++++.+|..|.||||+|+..++.++++.|++.|+.....
T Consensus 149 ~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~ 202 (222)
T 3ehr_A 149 WKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202 (222)
T ss_dssp HHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred HcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence 888888888888887 888888888888888888888888888888888766443
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=1.6e-19 Score=175.16 Aligned_cols=193 Identities=23% Similarity=0.270 Sum_probs=142.7
Q ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHH
Q 009344 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT 136 (537)
Q Consensus 57 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~ 136 (537)
.|..+.++|+.+...|+..+.+++....+..... +...+.... .....-..+++...........+....++|+.
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~-kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~ 136 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPV-KPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCE 136 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCC-SCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcC-CCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence 5677888999999999887776665432111110 111111111 11122222333333322211112233578999
Q ss_pred HHHcCCHHHHHHHHHcCCCcc-----cccCCCCCcHHHHHHHc---CcHHHHHHHHhcCCccccccCCCCchHHHHHHhC
Q 009344 137 AAMQGHVEVLNFLIEAESSLI-----TISRSNGKTALHSAARN---GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208 (537)
Q Consensus 137 A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 208 (537)
|+..|+.+.+..+++.+.+.. +..+..|.||||+|+.. |+.+++++|+++++++... |..|+||||+|+..
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~-d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLT 215 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC-CTTCCCHHHHHHHT
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc-CCCCCCHHHHHHHc
Confidence 999999999999999988753 33478899999999999 8999999999999887654 89999999999999
Q ss_pred CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCC
Q 009344 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256 (537)
Q Consensus 209 g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~ 256 (537)
|+.+++++|++.+ ++++.+|.+|+||||+|+..|+.+++++|++++.
T Consensus 216 g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 216 DNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999987 9999999999999999999999999999999873
No 104
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.82 E-value=1.3e-20 Score=176.68 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=94.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhc-CCccccccCCCCchHHHHH
Q 009344 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA-DSVIAIRTDKKGQTALHMA 205 (537)
Q Consensus 127 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A 205 (537)
+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++. +.++. .+|..|+||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCCCHHHHH
Confidence 44567777777777777777777777666 456677778888888888888888888877 55544 3478888888888
Q ss_pred HhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCC
Q 009344 206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTG 266 (537)
Q Consensus 206 ~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g 266 (537)
+..|+.+++++|++.+ ++++.+|.+|+||||+|+..++.++++.|++.+ ++.+..|.+|
T Consensus 148 ~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~ 206 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED 206 (222)
T ss_dssp HHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence 8888888888888886 888888888888888888888888888888777 5555555443
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=4.5e-19 Score=141.74 Aligned_cols=92 Identities=39% Similarity=0.685 Sum_probs=72.5
Q ss_pred CCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 009344 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKT 276 (537)
Q Consensus 197 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~ 276 (537)
+|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+..++.+++++|++++ ++++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence 3677888888888888888888776 777888888888888888888888888888776 77888888888888888888
Q ss_pred CcHHHHHHHHHcCh
Q 009344 277 GHSNLAALLREHGV 290 (537)
Q Consensus 277 ~~~~i~~~L~~~g~ 290 (537)
++.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 88888888887775
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=8.3e-19 Score=176.20 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=58.4
Q ss_pred CCCHHHHHHHc-CCHHHHHHHHHcCCcccccccC--CCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHH
Q 009344 61 GETALYVAAEY-GHVDLVAEMIKCYDLADAGIKA--RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA 137 (537)
Q Consensus 61 g~TpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A 137 (537)
+.|+||.|+.. |+.++++.|++.+ .+++..+ ..|.||||+|+..|+.+++++|++.+.+++.. |..|.||||+|
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~-d~~G~TpLh~A 275 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHA 275 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHH
Confidence 34445555544 4555555555444 3333333 44445555555555555555555544444322 44445555555
Q ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 009344 138 AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185 (537)
Q Consensus 138 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 185 (537)
+..|+.+++++|++++++ .+..|.+|.||||+|+..|+.+++++|++
T Consensus 276 ~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~ 322 (368)
T 3jue_A 276 TILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRL 322 (368)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 555555555555554444 34444455555555555555555555544
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=1.3e-18 Score=139.11 Aligned_cols=92 Identities=38% Similarity=0.595 Sum_probs=61.2
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHH
Q 009344 21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAF 100 (537)
Q Consensus 21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L 100 (537)
+|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+ .+++.+|..|.|||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~d~~g~t~l 72 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPL 72 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHH
Confidence 366777777777777777777766654 5556666777777777777777777777655 56666666677777
Q ss_pred HHHHHcCCHHHHHHHHhcCC
Q 009344 101 HIAAKEGHLEVLKVLLAVYP 120 (537)
Q Consensus 101 h~A~~~g~~~iv~~Ll~~~~ 120 (537)
|+|+..|+.+++++|++.++
T Consensus 73 ~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 73 HLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCC
Confidence 77777777777776666654
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=1.6e-18 Score=182.37 Aligned_cols=141 Identities=23% Similarity=0.198 Sum_probs=98.9
Q ss_pred CcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHH---cCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAE---YGHVDLVAEMIKCYDLADAGIKARNGFDA 99 (537)
Q Consensus 23 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 99 (537)
.+.||.|+..|+.+.|+.|++.+.+.+........|..|.||||+||. .|+.++|++|++.+ ++++.+|..|.||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g--a~vn~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG--GHLDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS--CCTTCCCSSSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC--CCCCccCCCCCcH
Confidence 367888888888888888888876522111112237778888888866 78888888888877 7778888888888
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH
Q 009344 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173 (537)
Q Consensus 100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~ 173 (537)
||+|+..|+.+++++|++++++++.. |..|.||||+|+..|+.+++++|+++|++.. .+|+|.+..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~-------~~~~h~~~~ 276 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEELLEQAQAGTF-------AFPLHVDYS 276 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCC-CTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-------CCcceeecc
Confidence 88888888888888888888876655 7788888888888888888888888877742 256776543
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=2.4e-18 Score=181.16 Aligned_cols=126 Identities=20% Similarity=0.248 Sum_probs=83.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCccccc------CCCCCcHHHHHHH---cCcHHHHHHHHhcCCccccccCCCCchHH
Q 009344 132 TALHTAAMQGHVEVLNFLIEAESSLITIS------RSNGKTALHSAAR---NGRLEVLKTLLAADSVIAIRTDKKGQTAL 202 (537)
Q Consensus 132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~------~~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 202 (537)
+.||.|+..|+.+.++.|++.|.+. +.. +..|.||||+|+. .|+.+++++|++++++++.. |..|+|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~-d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCC-CSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCcc-CCCCCcHH
Confidence 5677777777777777777776653 222 5567777777754 66777777777776665543 66677777
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCccc
Q 009344 203 HMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNG 261 (537)
Q Consensus 203 h~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~ 261 (537)
|+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+..|+.+++++|+++| ++++.
T Consensus 212 h~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~ 268 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQ-AGTFA 268 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTC-CCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC-C----
T ss_pred HHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC-CCCCC
Confidence 7777777777777777765 667777777777777777777777777777666 55554
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.76 E-value=2.5e-18 Score=172.66 Aligned_cols=129 Identities=23% Similarity=0.319 Sum_probs=117.2
Q ss_pred CCCCCcHHHHHHHc-CcHHHHHHHHhcCCccccccC--CCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHH
Q 009344 161 RSNGKTALHSAARN-GRLEVLKTLLAADSVIAIRTD--KKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH 237 (537)
Q Consensus 161 ~~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh 237 (537)
+..+.|+||.|+.. |+.++++.|++.+.++... + ..|.||||+|+..|+.+++++|++.+ +++|.+|..|+||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHH
Confidence 34456899999999 9999999999999887765 5 78999999999999999999999987 999999999999999
Q ss_pred HHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344 238 IATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292 (537)
Q Consensus 238 ~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~ 292 (537)
+|+..|+.+++++|++++ ++++..|..|.||||+|+..++.+++++|++++...
T Consensus 274 ~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~ 327 (368)
T 3jue_A 274 HATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327 (368)
T ss_dssp HHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence 999999999999999998 999999999999999999999999999999887543
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=1.9e-18 Score=143.88 Aligned_cols=107 Identities=35% Similarity=0.545 Sum_probs=58.7
Q ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q 009344 160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239 (537)
Q Consensus 160 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A 239 (537)
.|.+|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC-CCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHH
Confidence 344555555555555555555555555544333 2555555555555555555555555554 55555555555555555
Q ss_pred HHhCCHHHHHHHHhcCCCCcccCCCCCCCH
Q 009344 240 TRKGREQIVRLLLANSETNLNGVNRTGETA 269 (537)
Q Consensus 240 ~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~ 269 (537)
+..++.+++++|+++| +++|..+..|.||
T Consensus 83 ~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKG-ADVNARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTTS-SSHHHHSCCCC--
T ss_pred HHCCCHHHHHHHHHcC-CCCCcCCcccccc
Confidence 5555555555555555 5555555555554
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.74 E-value=3.5e-18 Score=142.25 Aligned_cols=108 Identities=29% Similarity=0.459 Sum_probs=77.7
Q ss_pred cCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCC
Q 009344 17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNG 96 (537)
Q Consensus 17 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g 96 (537)
.+|.+|.||||+|+..|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+ .+++.+|..|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~d~~g 75 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG--ADVNARSKDG 75 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT--CCTTCCCTTC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCcccCCCC
Confidence 4567777777777777777777777777654 5666777777777777777777777777765 6666777777
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChH
Q 009344 97 FDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTA 133 (537)
Q Consensus 97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 133 (537)
.||||+|+..|+.+++++|++++++++.. +..|.+|
T Consensus 76 ~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~-~~~~~~~ 111 (115)
T 2l6b_A 76 NTPEHLAKKNGHHEIVKLLDAKGADVNAR-SWGSSHH 111 (115)
T ss_dssp CCTTHHHHTTTCHHHHHHHHTTSSSHHHH-SCCCC--
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCcC-Ccccccc
Confidence 77777777777777777777777776654 5555554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=1.6e-16 Score=131.17 Aligned_cols=99 Identities=26% Similarity=0.395 Sum_probs=75.3
Q ss_pred CccccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 009344 9 PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD 88 (537)
Q Consensus 9 ~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~ 88 (537)
+.......-.+.+|.|+||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+ .+
T Consensus 11 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g--a~ 82 (110)
T 2zgd_A 11 SGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG--AD 82 (110)
T ss_dssp CC---------CCHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CC
T ss_pred cCCCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CC
Confidence 334445556677888888888888888888888887765 6677888888888888888888888888876 67
Q ss_pred ccccCCCCChHHHHHHHcCCHHHHHHH
Q 009344 89 AGIKARNGFDAFHIAAKEGHLEVLKVL 115 (537)
Q Consensus 89 ~~~~~~~g~t~Lh~A~~~g~~~iv~~L 115 (537)
.+.+|..|.||||+|+..|+.+++++|
T Consensus 83 ~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 83 VXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 788888888888888888888888775
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=3.2e-16 Score=129.26 Aligned_cols=91 Identities=29% Similarity=0.465 Sum_probs=74.6
Q ss_pred ccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 009344 193 RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDT 272 (537)
Q Consensus 193 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~ 272 (537)
..|.+|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++++ ++++..|..|.||||+
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDI 96 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHHH
Confidence 44778888888888888888888888876 788888888888888888888888888888886 7888888888888888
Q ss_pred HHHcCcHHHHHHH
Q 009344 273 AEKTGHSNLAALL 285 (537)
Q Consensus 273 A~~~~~~~i~~~L 285 (537)
|+..++.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 8888888888776
No 115
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=76.57 E-value=4.8 Score=25.77 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=20.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009344 465 EKWMAVAVTIVGAVIMAATLGTMIYWVIRHR 495 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (537)
+.-.+|...++|.++++.++....|+++++|
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 3446777788887777777776666665433
No 116
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=72.17 E-value=1.7 Score=32.03 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=21.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009344 465 EKWMAVAVTIVGAVIMAATLGTMIYWVIRHR 495 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (537)
....+++..++++++++.++.+++|.++...
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888877777655443
No 117
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=70.57 E-value=4.8 Score=25.81 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=19.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009344 466 KWMAVAVTIVGAVIMAATLGTMIYWVIRH 494 (537)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (537)
.-.+|+..++|.++++.++....++++++
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhh
Confidence 34567777888777777776666666543
No 118
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=59.58 E-value=14 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.458 Sum_probs=15.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009344 465 EKWMAVAVTIVGAVIMAATLGTMIYWVIRH 494 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (537)
++-.+++..++| ++++.+++..+++++++
T Consensus 9 ~~~~~Ia~~vVG-vll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 9 SPLTSIISAVVG-ILLVVVLGVVFGILIKR 37 (44)
T ss_dssp CSHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHH-HHHHHHHHHHHHhheeh
Confidence 344556666666 44555555555555443
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=54.78 E-value=13 Score=36.05 Aligned_cols=269 Identities=7% Similarity=0.042 Sum_probs=145.6
Q ss_pred ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-cccc
Q 009344 14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD-AGIK 92 (537)
Q Consensus 14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~-~~~~ 92 (537)
..-..|.+|.-.|......++.+..+.+.+.-.+ ...+ -..|..|+..+.-....|+.+....+++.-.+.- .-..
T Consensus 29 ~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~-~~~~--L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~ 105 (351)
T 3gvo_A 29 VEFSQDQHGSRFIQQKLERATPAERQIVFNEILQ-AAYQ--LMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLAL 105 (351)
T ss_dssp HHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGG-GHHH--HHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHT
T ss_pred HHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHH-hHHH--HHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhh
Confidence 3445666777777777777777766665554322 1122 2356777777777777787776666665322111 1235
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcC-Cc-ccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc--ccccCCCCCcHH
Q 009344 93 ARNGFDAFHIAAKEGHLEVLKVLLAVY-PE-LAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSL--ITISRSNGKTAL 168 (537)
Q Consensus 93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~-~~-~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL 168 (537)
+..|.-.+..+......+-...+++.- +. .....|..|+..+..+...+..+....+++.-... .-..+..|...+
T Consensus 106 ~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vv 185 (351)
T 3gvo_A 106 QMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVI 185 (351)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHH
T ss_pred CHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHH
Confidence 666666777666666655444444421 11 11223666766666666655544444444432111 112344455555
Q ss_pred HHHHHcCcH----HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCc--cccCCCCChHHHHHHHh
Q 009344 169 HSAARNGRL----EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASV--NMVDTKGNSPLHIATRK 242 (537)
Q Consensus 169 h~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i--~~~d~~G~t~Lh~A~~~ 242 (537)
..+...... .+++.|... ......|..|.-.+..+.+.+..+..+.+++.-...+ -..+..|...+..+...
T Consensus 186 q~~le~~~~~~~~~ii~~l~~~--~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~ 263 (351)
T 3gvo_A 186 QRILEHCTAEQTLPILEELHQH--TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH 263 (351)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTT--HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHhhh--HHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Confidence 544444333 234444322 1222347777777777777777776666666432221 12456677777777776
Q ss_pred CCHH----HHHHHHhcCC-----CCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344 243 GREQ----IVRLLLANSE-----TNLNGVNRTGETALDTAEKTGHSNLAALLRE 287 (537)
Q Consensus 243 ~~~~----iv~~Ll~~~~-----~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~ 287 (537)
+..+ +++.++.... ...-..|..|+-.+..+...+.++-.+.+.+
T Consensus 264 ~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~ 317 (351)
T 3gvo_A 264 ASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH 317 (351)
T ss_dssp SCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHH
Confidence 6654 3444443110 1122457888888888777766654444443
No 120
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=45.72 E-value=19 Score=34.76 Aligned_cols=190 Identities=11% Similarity=0.111 Sum_probs=109.4
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHhcC--CcccccCCCCCChHHHHHHHcCCHHHHHHHHHcC-C-CcccccCCCCCc
Q 009344 91 IKARNGFDAFHIAAKEGHLEVLKVLLAVY--PELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE-S-SLITISRSNGKT 166 (537)
Q Consensus 91 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~--~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~-~-~~~~~~~~~g~t 166 (537)
..|..|+..+.-....++.+....+++.- .-.....+..|.-.+..+......+-...+++.- + -..-..|..|..
T Consensus 68 ~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ 147 (351)
T 3gvo_A 68 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 147 (351)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHH
T ss_pred HhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhH
Confidence 35667777777777777776666655532 1122234677877888777777665555555431 1 112345777777
Q ss_pred HHHHHHHcCcHHHHHHHHhcC--CccccccCCCCchHHHHHHhCCCHHHHHHHHHh--CCCCccccCCCCChHHHHHHHh
Q 009344 167 ALHSAARNGRLEVLKTLLAAD--SVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA--EPASVNMVDTKGNSPLHIATRK 242 (537)
Q Consensus 167 pLh~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~i~~~d~~G~t~Lh~A~~~ 242 (537)
.+......+..+..+.+++.- .......+..|...+.-+.+....+-...+++. .....-..|..|+-.+..+...
T Consensus 148 ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~ 227 (351)
T 3gvo_A 148 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEH 227 (351)
T ss_dssp HHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHh
Confidence 777776655544444444321 111223456676676666665554433333331 1122234688999999999999
Q ss_pred CCHHHHHHHHhcCCCC--cccCCCCCCCHHHHHHHcCcHH
Q 009344 243 GREQIVRLLLANSETN--LNGVNRTGETALDTAEKTGHSN 280 (537)
Q Consensus 243 ~~~~iv~~Ll~~~~~~--~~~~d~~g~T~L~~A~~~~~~~ 280 (537)
+.++..+.+++.-... .-..++.|...+.-+...+..+
T Consensus 228 ~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~ 267 (351)
T 3gvo_A 228 GRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 267 (351)
T ss_dssp SCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred CchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHH
Confidence 8887766666542111 2234667777777766666554
No 121
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=44.58 E-value=1.2e+02 Score=28.91 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.3
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHhh
Q 009344 343 AEGLNNAINSTTVVAVLIATIAFAAIF 369 (537)
Q Consensus 343 ~~~l~~~~~~~~~va~liatvtf~a~~ 369 (537)
....++....+++++++.+-.||-||+
T Consensus 272 s~~~N~~mk~LTiit~IflP~T~IaGi 298 (339)
T 4ev6_A 272 NIKMNQIMKILTMVTTIFAVPMWITGI 298 (339)
T ss_dssp HHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455556677777777777776643
No 122
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.62 E-value=30 Score=21.29 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 009344 469 AVAVTIVGAVIMAATLGTMIYWVIR 493 (537)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (537)
++.-.++|.++-+.++..+.+|+++
T Consensus 12 aIAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceeeeehHHHHHHHHHHHHHHHHee
Confidence 3444455555444545555555443
No 123
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=40.37 E-value=41 Score=21.29 Aligned_cols=29 Identities=14% Similarity=0.420 Sum_probs=19.7
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009344 464 REKWMAVAVTIVGAVIMAATLGTMIYWVI 492 (537)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
.....+++..++++++++.++..++|.+.
T Consensus 6 ~~n~~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 6 GPDILVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677677777777777777776554
No 124
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=39.38 E-value=42 Score=32.59 Aligned_cols=194 Identities=11% Similarity=0.075 Sum_probs=87.6
Q ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-ccccCCCCChHHHHHHHcCCHHHHHHHHhc-CCcc-cccCCCCCChH
Q 009344 57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLAD-AGIKARNGFDAFHIAAKEGHLEVLKVLLAV-YPEL-AMTVDLTNTTA 133 (537)
Q Consensus 57 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~-~~~~d~~g~t~ 133 (537)
.|..|+..+......+..+....+++...+.- .-..+..|.-.+..+......+-...+++. .+.. ....|..|...
T Consensus 74 ~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~V 153 (369)
T 3k49_A 74 NDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHV 153 (369)
T ss_dssp HSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHH
T ss_pred hCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchH
Confidence 56778888877788887776666665421111 112455566666666665555444444432 1111 11235556555
Q ss_pred HHHHHHcCCHHHHHHHHHcCC-Cc-ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCc--cccccCCCCchHHHHHHhCC
Q 009344 134 LHTAAMQGHVEVLNFLIEAES-SL-ITISRSNGKTALHSAARNGRLEVLKTLLAADSV--IAIRTDKKGQTALHMAVKGQ 209 (537)
Q Consensus 134 L~~A~~~g~~~iv~~Ll~~~~-~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~g~t~Lh~A~~~g 209 (537)
+......+..+....+++.-. .. .-..+..|...+..+...+..+.-+.+++.-.. .....|..|.-.+..+...+
T Consensus 154 iQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~ 233 (369)
T 3k49_A 154 IQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQD 233 (369)
T ss_dssp HHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcC
Confidence 555555444332222222210 00 011234455555555555554443444432111 11123555555555555544
Q ss_pred CH----------HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344 210 NI----------EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252 (537)
Q Consensus 210 ~~----------~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll 252 (537)
.. .+++.+..+- .--..++.|...+..+...+..+.-+.++
T Consensus 234 ~~~~~~~~~~~~~i~~~l~~~~--~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii 284 (369)
T 3k49_A 234 QFTNKEMVDIKQEIIETVANNV--VEYSKHKFASNVVEKSILYGSKNQKDLII 284 (369)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTH--HHHHTSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred CchhhhhHhHHHHHHHHHHHHH--HHHHhhhHhhHHHHHHHHhCCHHHHHHHH
Confidence 32 1222222110 00113455555566666665555544444
No 125
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=38.69 E-value=14 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009344 467 WMAVAVTIVGAVIMAATLGTMIYWVIRH 494 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (537)
-.++...++| ++++.+++..+.+++++
T Consensus 7 ~~sIaagVvg-lll~vii~l~~~~~iRR 33 (35)
T 1iij_A 7 VTFIIATVVG-VLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHHHH-HHHHHHHTTTTTHHHHH
T ss_pred CcEeHHHHHH-HHHHHHHHHHhheEEee
Confidence 3445555555 55555555555555543
No 126
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=36.97 E-value=48 Score=32.16 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=90.5
Q ss_pred cCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccccccCCC
Q 009344 17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDL-ADAGIKARN 95 (537)
Q Consensus 17 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~~~~~ 95 (537)
++|..|+..+......|..+....+++.-.. .+..+ ..+..|.-.+..+......+-...+++.-.+ ...-.+|..
T Consensus 73 ~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g-~~~~L--~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~ 149 (369)
T 3k49_A 73 SNDVFGNYVIQKFFEFGSKIQKNTLVDQFKG-NMKQL--SLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQN 149 (369)
T ss_dssp HHSTTTHHHHHHHHHHCCHHHHHHHHHHHTT-CHHHH--HHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTT
T ss_pred hhCcccccHHHHHHHhCCHHHHHHHHHHHhh-hHHHH--hcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3455566665555555555544444432111 11111 1244555555555555555444444432111 111235666
Q ss_pred CChHHHHHHHcCCHH----HHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--cccccCCCCCcHHH
Q 009344 96 GFDAFHIAAKEGHLE----VLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS--LITISRSNGKTALH 169 (537)
Q Consensus 96 g~t~Lh~A~~~g~~~----iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpLh 169 (537)
|+..+......+..+ +++.+..+...+ ..+..|...+..+...+..+--+.+++.-.. ..-..|..|...+.
T Consensus 150 Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~l--s~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ 227 (369)
T 3k49_A 150 GNHVIQKAIETIPIEKLPFILSSLTGHIYHL--STHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQ 227 (369)
T ss_dssp HHHHHHHHHHHSCGGGCHHHHHHHTTTHHHH--HTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHHHHHHH--hCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 666665555554433 222222211111 2245666666666666666555555543211 11234555655555
Q ss_pred HHHHcCcH----------HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHH
Q 009344 170 SAARNGRL----------EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK 219 (537)
Q Consensus 170 ~A~~~g~~----------~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 219 (537)
.+...+.. .+++.+..+ -.....++.|...+..+...+..+.-+.+++
T Consensus 228 ~~l~~~~~~~~~~~~~~~~i~~~l~~~--~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~ 285 (369)
T 3k49_A 228 YVLQQDQFTNKEMVDIKQEIIETVANN--VVEYSKHKFASNVVEKSILYGSKNQKDLIIS 285 (369)
T ss_dssp HHHTCCTTSCHHHHHHHHHHHHHHHTT--HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHT
T ss_pred HHHhcCCchhhhhHhHHHHHHHHHHHH--HHHHHhhhHhhHHHHHHHHhCCHHHHHHHHH
Confidence 55555432 223333321 1112235666666666666666665555554
No 127
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=36.51 E-value=68 Score=21.42 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=17.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHH
Q 009344 464 REKWMAVAVTIVGAVIMAATLGTMIYW 490 (537)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
...|..+.+.++++++++.++....|.
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778777777766655553
No 128
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.83 E-value=88 Score=20.90 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=17.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHH
Q 009344 464 REKWMAVAVTIVGAVIMAATLGTMIYW 490 (537)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
...|..+.+.++++++++.++....|.
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777666655553
No 129
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=31.45 E-value=1.5e+02 Score=25.54 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=10.7
Q ss_pred hHhhhhHHHHHHHHHHH
Q 009344 401 IFFVFDSIALFISLAVV 417 (537)
Q Consensus 401 ~f~~~~~~a~~~s~~~~ 417 (537)
+|+++-.++..+++.++
T Consensus 4 ~F~~~a~~~i~~al~vv 20 (184)
T 3rko_J 4 AFYICGLIAILATLRVI 20 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666665444
No 130
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=30.96 E-value=1.5e+02 Score=28.55 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=34.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 009344 305 ELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAI 368 (537)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~k~~~~~l~~~~~~~~~va~liatvtf~a~ 368 (537)
+.+....++........+.....++......+.........+++....+++++++++-.||-||
T Consensus 258 ~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaG 321 (363)
T 2iub_A 258 ETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAG 321 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444333344444444444444433344444555666778888888888888774
No 131
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=27.73 E-value=99 Score=19.43 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=16.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHH
Q 009344 465 EKWMAVAVTIVGAVIMAATLGTMIY 489 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (537)
..|..+.+.+++...++.++....|
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777766655554
No 132
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.20 E-value=3.4e+02 Score=25.61 Aligned_cols=24 Identities=4% Similarity=0.193 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 009344 437 VINKLMWLACVLISVAYLAMSFIV 460 (537)
Q Consensus 437 ~~~~l~~~~~~~~~~af~~~~~~v 460 (537)
....|..++++++...|+||+|=+
T Consensus 278 ~mk~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 278 IMKILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 334466788888889999999843
No 133
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=26.19 E-value=1.1e+02 Score=18.26 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 009344 468 MAVAVTIVGAVIMAATLGTM 487 (537)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~ 487 (537)
+...|+++|..+++..++..
T Consensus 8 Tl~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 8 ALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHH
Confidence 44555566665555555544
No 134
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=21.77 E-value=3.7e+02 Score=22.81 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=9.2
Q ss_pred HHHHcCCHHHHHHHHhcC
Q 009344 102 IAAKEGHLEVLKVLLAVY 119 (537)
Q Consensus 102 ~A~~~g~~~iv~~Ll~~~ 119 (537)
.|...|++++++....+-
T Consensus 43 ~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 43 EALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHh
Confidence 344455555555555443
No 135
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=21.23 E-value=4.3e+02 Score=24.91 Aligned_cols=35 Identities=17% Similarity=-0.089 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHH
Q 009344 443 WLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGA 477 (537)
Q Consensus 443 ~~~~~~~~~af~~~~~~v~~~~~~~~~~~~~~~~~ 477 (537)
.++++..+..|..++.-.+|..+...++-++.+++
T Consensus 249 git~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~ 283 (347)
T 3rhw_A 249 GVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGAC 283 (347)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHH
Confidence 34444445556667666777666544555544433
No 136
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=20.51 E-value=5.2e+02 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHH
Q 009344 444 LACVLISVAYLAMSFIVVGKREKWMAVAVTIVGA 477 (537)
Q Consensus 444 ~~~~~~~~af~~~~~~v~~~~~~~~~~~~~~~~~ 477 (537)
+..+..+..|..++.-.+|..+.-.++-++.+++
T Consensus 236 it~lL~~~~~~~~~~~~lP~~s~vp~i~~~~~~~ 269 (322)
T 3rqw_A 236 FTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAG 269 (322)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHH
T ss_pred EehHHHHHHHHHHHhhhCCCccchHHHHHHHHHH
Confidence 3334444456666666677655444444444433
Done!