BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009345
(537 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJW9|CDT1A_ARATH CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A
PE=1 SV=1
Length = 571
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/266 (47%), Positives = 170/266 (63%), Gaps = 12/266 (4%)
Query: 1 MSSSDSPQSIHFRCKKPITAK-PKPEMSNQNPNPTQLASKTPEKQPSR---RARNSRMAL 56
MS+ S +SI F+ KK + P + NPNP+ +A TPEK R+RN +AL
Sbjct: 1 MSTPGSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVAL 60
Query: 57 SLKEIRKAAQTNPQQPPKDQIESAGK-----QISASPSVKSSVNPAGSGSPKLPAKYMQL 111
S+KEIR+AA + ++ +D + S+ K S+S K + + KLP KY L
Sbjct: 61 SVKEIRQAAGS--RRRSEDPVASSAKSRLFFDSSSSSPSKRKSSNKNAEKEKLPEKYENL 118
Query: 112 AECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVL 171
+ F++LD + L KL+ S PTF++I +IE LT+RRF HLAQ+K ILPE I+IK+VL
Sbjct: 119 GKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRVL 178
Query: 172 TFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPE 231
DE T CMKPDLHVT+NADA+E + KSK SK + LR VFRARL DF+K HP+GDE+PE
Sbjct: 179 IHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAHPQGDEVPE 238
Query: 232 ETLPEPFNRSRSDLQLNM-VKKSTSL 256
E LPEPFNR + N+ VK+ +SL
Sbjct: 239 EPLPEPFNRRKPVENSNVEVKRVSSL 264
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 20/128 (15%)
Query: 402 TPVKEIDPMESKVSYPIKVDSE---QSTPAKLVSTPARLMIGTPALHQPKRC--YMTPEN 456
TPVK + + S P +DS +TP + STPARLM + A KR + P++
Sbjct: 326 TPVKPVSTLAKFPSTPAIIDSTPVITATPPEFASTPARLMSTSLAARPLKRSNGHTNPDD 385
Query: 457 VSASSPNKLTRR---------PPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDIL 507
+SA P KL RR P RT+ D P+ ED+S D ++L IL
Sbjct: 386 ISADPPTKLVRRSLSLNFDSYPEDERTM-DFTDDIPIDQVP-----EEDVSSDDEILSIL 439
Query: 508 PENLIQSV 515
P+ L ++
Sbjct: 440 PDKLRHAI 447
>sp|Q9M1S9|CDT1B_ARATH CDT1-like protein b OS=Arabidopsis thaliana GN=CDT1B PE=2 SV=1
Length = 486
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 113/169 (66%), Gaps = 11/169 (6%)
Query: 77 IESAGKQI-SASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFT 135
I++ +QI S+SP +S + KLP ++ L E F+ LD IRLLKLK SS T+
Sbjct: 26 IKTVKRQIFSSSPKPESVI--------KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYA 77
Query: 136 SICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIEC 195
+ICPKIE LT+R FS HLAQ+K I PE I++K+VL F E T CMKP LH+ +N DAI
Sbjct: 78 NICPKIEYLTNRIFSYDHLAQMKHIYPEAIELKRVLKFVEDTCCMKPRLHIKLNTDAIVV 137
Query: 196 DGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSD 244
+ + C +K + LR VF ++L+DF K HP+ DEIP+E LPEPFN + D
Sbjct: 138 E-DTICGTKYMELRKVFHSKLVDFRKAHPK-DEIPKELLPEPFNSPQRD 184
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 396 QSCPPVTPVKEIDPMESK-VSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCY-MT 453
Q V P + +ES+ V P+K + STP+K +STP RLM TP L KRC +T
Sbjct: 216 QDVNKVIPDSTLSHIESRIVETPVK---DLSTPSKDLSTPIRLMSATPTLQLSKRCIELT 272
Query: 454 PE---NVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPEN 510
PE + S S N L R P +SL FDT ++A + + + G ++ +
Sbjct: 273 PEGGDDNSLRSTNSLARGPS-----RSLNFDTFEEDAIEKDDIGNESDDKG--INYEEDG 325
Query: 511 LIQSV 515
L+QSV
Sbjct: 326 LLQSV 330
>sp|Q9H211|CDT1_HUMAN DNA replication factor Cdt1 OS=Homo sapiens GN=CDT1 PE=1 SV=3
Length = 546
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPE 163
LP KY LAE F S+D ++ +L + +PTF + ++ + RRF ++ Q+K + P
Sbjct: 186 LPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEECNVGQIKTVYPA 245
Query: 164 VIQIKK---VLTFDEKTSCMKPDLHVTVN-ADAIECDGKSK--CNSKNLNLRTVFRARLM 217
+ ++ V TF + T + D +T+ E DG + S+ L R +F +L+
Sbjct: 246 SYRFRQERSVPTFKDGTR--RSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLV 303
Query: 218 DFLKDH 223
+ +K+H
Sbjct: 304 EHVKEH 309
>sp|Q8R4E9|CDT1_MOUSE DNA replication factor Cdt1 OS=Mus musculus GN=Cdt1 PE=1 SV=1
Length = 557
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 47 RRARNSRMALSLKEIRKAAQTNPQQP--PKDQIESAGKQISASPSVKSSVNPAGSGSPKL 104
RRAR ++ + +R Q N +P P ++ + + +P+ + A G P L
Sbjct: 140 RRAR--KLGAQARALRARVQENAVEPSTPDAKVPTEQPCVEKAPAYQRFHALAQPGLPGL 197
Query: 105 --PAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILP 162
P KY L E F S+D ++ +L + + TF + ++ + +RF ++ Q+K + P
Sbjct: 198 VLPYKYQVLVEMFRSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYP 257
Query: 163 EVIQIKK---VLTFDEKTSCMKPDLHVTVN-ADAIECDGKSKCNSK-NLNLRTVFRARLM 217
+ ++ V TF K S + D +T+ E G ++ + L R VFR L+
Sbjct: 258 TSYRFRQECNVPTF--KDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLV 315
Query: 218 DFLKDH 223
+ +K+
Sbjct: 316 ERVKEQ 321
>sp|Q9I9A7|CDT1_XENLA DNA replication factor Cdt1 OS=Xenopus laevis GN=cdt1 PE=1 SV=2
Length = 617
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 44/259 (16%)
Query: 6 SPQSIHFRCKKPITAKPKPEMSNQNPNPTQLASKTPEKQ-----PSRRARNSRMALSLK- 59
+P S+ + K + P+ + NPT +K+P K+ SR R +A +
Sbjct: 127 TPSSLGKKIKDMVNVSLSPKFNELARNPTTPETKSPAKENLLELKSRLQRIQELAQKVNL 186
Query: 60 --------------------------EIRKAAQTNPQQPPKDQIESAGKQISASPSVKSS 93
+IR A+ Q D E ++ +P+ +
Sbjct: 187 PAASSEGKVTITDLKARLKRAQELDTKIRAKAEKTETQAI-DLTEQPAQESEKAPAYQRF 245
Query: 94 VNPAGSGSPK--LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSL 151
N A +P LP KY LAE F S+D ++ +L + + TF+ + ++ + ++F
Sbjct: 246 HNLAQDAAPGLTLPYKYKVLAEMFRSMDTIVGMLFNRSETITFSKVKQGVQDMMRKQFEQ 305
Query: 152 GHLAQLKFILPEVI---QIKKVLTFDEKTSCMKPDLHVTVNADAIECD---GKSKCN-SK 204
++ Q+K + P Q K + TF K K D +T+ E D G+ + S+
Sbjct: 306 RNVGQIKTVYPNAYKYRQEKNIPTF--KDGVKKTDYQLTIEPLVAEGDMLSGRPHLSASR 363
Query: 205 NLNLRTVFRARLMDFLKDH 223
L + +F L +K H
Sbjct: 364 LLERKQLFHRSLTSIVKQH 382
>sp|P40382|CDT1_SCHPO Cell division cycle protein cdt1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cdt1 PE=1 SV=2
Length = 444
Score = 38.9 bits (89), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 111 LAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKV 170
L + F+++D ++ + PTF + K+ LT + HLAQ+ + PE I
Sbjct: 94 LEKVFNAVDICVKFHLSINTKPTFVLLENKVSGLTKISLKITHLAQILTVWPESFAITPC 153
Query: 171 LTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIP 230
T + +L NA+ E +S F+ RL +L +H EIP
Sbjct: 154 FTIHQGKRVATYELSYPRNANLPEAFSRS----------IEFKRRLEKWLLEHCSETEIP 203
Query: 231 EETL 234
+ L
Sbjct: 204 AQQL 207
>sp|P40193|PTSJ_SALTY Putative transcriptional regulatory protein PtsJ OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=ptsJ PE=3 SV=1
Length = 430
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 417 PIKVDSEQSTPAKL---VSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRP 469
P+ VDSE P KL ++ AR +I TP H P C ++ +A+ N L R P
Sbjct: 191 PVSVDSEGMQPEKLERALNQGARAVILTPRAHNPTGCSLSARR-AAALQNMLARYP 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,019,133
Number of Sequences: 539616
Number of extensions: 7723049
Number of successful extensions: 22561
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 22022
Number of HSP's gapped (non-prelim): 644
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)