Query         009345
Match_columns 537
No_of_seqs    99 out of 118
Neff          2.9 
Searched_HMMs 29240
Date          Mon Mar 25 03:05:57 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009345hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1wlq_C CDT1 protein; coiled-co 100.0 3.8E-44 1.3E-48  339.3  15.8  151   99-253    27-188 (201)
  2 2zxx_C DNA replication factor  100.0 2.8E-38 9.4E-43  295.6  15.7  150   98-251    22-182 (197)
  3 2wvr_C DNA replication factor  100.0 4.2E-34 1.4E-38  301.5  14.6  152   98-253   180-343 (546)
  4 2krc_A DNA-directed RNA polyme  50.5      16 0.00055   31.3   4.3   44  117-160    15-60  (99)
  5 1k2h_A S100A1, S-100 protein,   25.3      70  0.0024   23.9   3.8   51  104-159     4-59  (93)
  6 2joj_A Centrin protein; N-term  23.2      61  0.0021   23.2   3.0   47  106-159     4-50  (77)
  7 1tiz_A Calmodulin-related prot  22.1      88   0.003   21.5   3.6   44  111-161     3-46  (67)
  8 1cb1_A Calbindin D9K; calcium-  20.6      82  0.0028   22.5   3.2   49  104-158     2-53  (78)
  9 3ox6_A Calcium-binding protein  19.8 1.5E+02   0.005   23.2   4.8   48  108-161    87-134 (153)
 10 2kn2_A Calmodulin; S MAPK phos  19.8 1.2E+02  0.0041   22.6   4.1   49  105-160     5-53  (92)

No 1  
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=100.00  E-value=3.8e-44  Score=339.32  Aligned_cols=151  Identities=21%  Similarity=0.312  Sum_probs=141.1

Q ss_pred             CCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEee-cCCCC
Q 009345           99 SGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLT-FDEKT  177 (537)
Q Consensus        99 ~psL~LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk~-~DegS  177 (537)
                      .++|+||+||++|+|||+|||+|++||+||+++|||+|||++||+|+||+|+++|||||||||||||.|++++. ++.++
T Consensus        27 ~~~l~LP~kY~~L~e~F~~ldtv~~ml~~R~~~~Tf~~ik~~VE~~trr~F~~~hLaQIk~IyPeay~l~~~k~~~~f~s  106 (201)
T 1wlq_C           27 LPGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPMSYRFRQECNVPTFKD  106 (201)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHTSCCCHHHHHHHHHHCTTSEEEEEEECCSSCCS
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHhcCCcCHHHHHHHHHhccCceEEEeeeccccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999986 78899


Q ss_pred             CCCCCCceEEEEecccccC--CCCcchhhhHHHHHHHHHHHHHHHHhCCCC--------CCCCCCCCCCCCCCCcchhhh
Q 009345          178 SCMKPDLHVTVNADAIECD--GKSKCNSKNLNLRTVFRARLMDFLKDHPEG--------DEIPEETLPEPFNRSRSDLQL  247 (537)
Q Consensus       178 ~ckk~dYQLtL~PdlvE~d--~p~ks~S~LLeRRrvFrsrLLdfVK~HHE~--------~dIPEa~LPEPFn~~~~~l~l  247 (537)
                      +|+..+|||+|+||+++..  ++.++++.+++||++||++|+++||+||++        ++||+++|.+.    +++|+|
T Consensus       107 ~~k~~~yqL~i~Pnv~~~~~~~~~ls~s~l~~Rr~~F~~~Ll~~Vk~~H~~FL~sl~~pi~i~~d~l~RW----HP~F~l  182 (201)
T 1wlq_C          107 SIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPPMAVPDDQLTRW----HPRFNV  182 (201)
T ss_dssp             CCCGGGEEEEEEECSSCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTCCSC----CTTCCG
T ss_pred             ccccCcceEEEecccccccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCChhhcccc----CCCCCc
Confidence            9999999999999998744  478999999999999999999999999977        67899999988    899999


Q ss_pred             hhhccc
Q 009345          248 NMVKKS  253 (537)
Q Consensus       248 ~a~~~~  253 (537)
                      |.|-+=
T Consensus       183 d~vp~I  188 (201)
T 1wlq_C          183 DEVPDI  188 (201)
T ss_dssp             GGSCCC
T ss_pred             ccCCCC
Confidence            987654


No 2  
>2zxx_C DNA replication factor CDT1; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=100.00  E-value=2.8e-38  Score=295.55  Aligned_cols=150  Identities=22%  Similarity=0.347  Sum_probs=132.1

Q ss_pred             CCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEee-cCCC
Q 009345           98 GSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLT-FDEK  176 (537)
Q Consensus        98 ~~psL~LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk~-~Deg  176 (537)
                      +.++|+||+||+.|+++|++||+|++||++|++++||.+||++||+|+||+|++.|||||+||||+||.|++++. ++.+
T Consensus        22 ~~~~l~LP~ky~~L~~~F~~ld~v~~~l~~R~~~~tf~~lk~~Ve~~~~r~f~~~~LaqI~~l~P~a~~~~~~~~~~~~~  101 (197)
T 2zxx_C           22 GLPGLVLPYKYQVLVEMFRSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPTSYRFRQECNVPTFK  101 (197)
T ss_dssp             SSCSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHSSCCCHHHHHHHHHHCGGGEEEEEEECCSSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHcCCCCHHHHHHHHHhccCeeEEEEEecccccC
Confidence            346899999999999999999999999999999999999999999999999999999999999999999999874 6678


Q ss_pred             CCCCCCCceEEEEecccccCC--CCcchhhhHHHHHHHHHHHHHHHHhCCCC--------CCCCCCCCCCCCCCCcchhh
Q 009345          177 TSCMKPDLHVTVNADAIECDG--KSKCNSKNLNLRTVFRARLMDFLKDHPEG--------DEIPEETLPEPFNRSRSDLQ  246 (537)
Q Consensus       177 S~ckk~dYQLtL~PdlvE~d~--p~ks~S~LLeRRrvFrsrLLdfVK~HHE~--------~dIPEa~LPEPFn~~~~~l~  246 (537)
                      ++|+..+|||+|.|+++++.+  ..++++.+++||++||++|+++||+||+.        +.||++.|.+.    +++|+
T Consensus       102 ~~~~~~~yqL~i~p~~~~~~~~~~~~s~~~l~~R~~~Fr~~Ll~~Vk~~H~~fL~~l~~~~~~~~~~l~rW----HP~F~  177 (197)
T 2zxx_C          102 DSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPPMAVPDDQLTRW----HPRFN  177 (197)
T ss_dssp             SCCCGGGEEEEEEECSSCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCGGGCCSC----CTTCC
T ss_pred             CccccccceEEEeecCccccccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhcccc----CCCCC
Confidence            899999999999999988543  57889999999999999999999999976        33456665554    66677


Q ss_pred             hhhhc
Q 009345          247 LNMVK  251 (537)
Q Consensus       247 l~a~~  251 (537)
                      ||.|-
T Consensus       178 le~vp  182 (197)
T 2zxx_C          178 VDEVP  182 (197)
T ss_dssp             GGGSC
T ss_pred             cccCC
Confidence            77653


No 3  
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A*
Probab=100.00  E-value=4.2e-34  Score=301.52  Aligned_cols=152  Identities=23%  Similarity=0.392  Sum_probs=125.0

Q ss_pred             CCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhcccceEeEEEeec-CCC
Q 009345           98 GSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTF-DEK  176 (537)
Q Consensus        98 ~~psL~LP~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~IyPEAY~irqIk~~-Deg  176 (537)
                      +.+++.||+||+.|+++|++||+|++||++|++.+||.||+++||+|++|+|++.||+||+||||+||.|++++.. ..+
T Consensus       180 ~~~~l~LP~ky~~L~elF~alDtvlslL~~R~~~~tf~kI~~~Ve~mtkrrFt~~hLaQI~~I~PeaY~l~~~k~~~~f~  259 (546)
T 2wvr_C          180 GLPGLVLPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEERNVGQIKTVYPASYRFRQERSVPTFK  259 (546)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHSSCCCHHHHHHHHHHCGGGEEEEEC-------
T ss_pred             CCccccCcHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHcCCccHHHHHHHHHhccchhhhhhhhcccccc
Confidence            3468999999999999999999999999999999999999999999999999999999999999999999965332 335


Q ss_pred             CCCCCCCceEEEEecccccC---CCCcchhhhHHHHHHHHHHHHHHHHhCCCC--------CCCCCCCCCCCCCCCcchh
Q 009345          177 TSCMKPDLHVTVNADAIECD---GKSKCNSKNLNLRTVFRARLMDFLKDHPEG--------DEIPEETLPEPFNRSRSDL  245 (537)
Q Consensus       177 S~ckk~dYQLtL~PdlvE~d---~p~ks~S~LLeRRrvFrsrLLdfVK~HHE~--------~dIPEa~LPEPFn~~~~~l  245 (537)
                      ++|++++|||+|+|++.+..   .+.++.+.+++||++||++|++||++||++        ++||+++|++++    ++|
T Consensus       260 s~~k~~dyqL~I~P~l~~e~~~~~~~~s~s~l~~Rr~~Fr~rL~~~Vk~hHe~fL~sL~pp~~Ip~e~L~rwh----p~F  335 (546)
T 2wvr_C          260 DGTRRSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLASLSPAMVVPEDQLTRWH----PRF  335 (546)
T ss_dssp             --------CEEEEECCCCCTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCCCCGGGCCSCC----TTC
T ss_pred             ccccCCCceEEEecCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCchhhccccC----CCC
Confidence            68999999999999887632   256889999999999999999999999998        799999999984    467


Q ss_pred             hhhhhccc
Q 009345          246 QLNMVKKS  253 (537)
Q Consensus       246 ~l~a~~~~  253 (537)
                      +||.|.+-
T Consensus       336 dle~vpdI  343 (546)
T 2wvr_C          336 NVDEVPDI  343 (546)
T ss_dssp             CSTTSCCC
T ss_pred             CccccCCc
Confidence            77766444


No 4  
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=50.48  E-value=16  Score=31.33  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCCh--hhHHHHhhh
Q 009345          117 SLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSL--GHLAQLKFI  160 (537)
Q Consensus       117 ~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFse--sHLAQIK~I  160 (537)
                      -+|.+..+|..+++..+|..|-..|+...+....+  .-+||+.+-
T Consensus        15 miDvAy~iL~~~~~~~~F~dL~~eV~~~~~~s~ee~~~~iaqfYTd   60 (99)
T 2krc_A           15 LVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDRIAQFYTD   60 (99)
T ss_dssp             HHHHHHHHHHHHCSCEEHHHHHHHHHHHHTSCGGGGTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            37889999999999999999999999998766654  556776553


No 5  
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=25.32  E-value=70  Score=23.93  Aligned_cols=51  Identities=10%  Similarity=0.025  Sum_probs=38.1

Q ss_pred             CchhHHHHHHHHhhHHHHHHHHHhcCC-CcchhhhhHHHHHH----hcCCCChhhHHHHhh
Q 009345          104 LPAKYMQLAECFDSLDAVIRLLKLKCS-SPTFTSICPKIECL----TDRRFSLGHLAQLKF  159 (537)
Q Consensus       104 LP~KYe~LaElFr~LDTVVsML~nRkE-~iTF~KLK~aVE~M----TRRnFsesHLAQIK~  159 (537)
                      |....+.|.++|+.+|+     .++.- .+++.+++..+...    .+..++...+.+|..
T Consensus         4 l~~~~~~l~~~F~~~D~-----~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~   59 (93)
T 1k2h_A            4 LETAMETLINVFHAHSG-----KEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMK   59 (93)
T ss_dssp             HHHHHHHHHHHHHHHHT-----TSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcc-----cCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            44566778888998884     46666 99999999999873    566777777766543


No 6  
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=23.16  E-value=61  Score=23.21  Aligned_cols=47  Identities=17%  Similarity=0.209  Sum_probs=35.4

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhh
Q 009345          106 AKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKF  159 (537)
Q Consensus       106 ~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~  159 (537)
                      ...+.|.++|+.+|      .++.-.+++..++..++.+ +...+...+.+|..
T Consensus         4 ~~~~~l~~~F~~~D------~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~   50 (77)
T 2joj_A            4 EQKQEIKEAFDLFD------TNKTGSIDYHELKVAMRAL-GFDVKKPEILELMN   50 (77)
T ss_dssp             HHHHHHHHHHHHHC------CSSSSEEEHHHHHHHHHHH-TCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC------CCCCCCCcHHHHHHHHHHh-CCCCCHHHHHHHHH
Confidence            45678889999998      5778889999999999886 45566655555443


No 7  
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=22.08  E-value=88  Score=21.51  Aligned_cols=44  Identities=11%  Similarity=0.127  Sum_probs=33.3

Q ss_pred             HHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhc
Q 009345          111 LAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFIL  161 (537)
Q Consensus       111 LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~Iy  161 (537)
                      |.++|+.+|      .+..-.+++.+++..++.+ ...++...+.+|...+
T Consensus         3 l~~~F~~~D------~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~   46 (67)
T 1tiz_A            3 AKRVFEKFD------KNKDGKLSLDEFREVALAF-SPYFTQEDIVKFFEEI   46 (67)
T ss_dssp             HHHHHHHHC------TTSSSCEEHHHHHHHHHHT-CTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHC------CCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHH
Confidence            667888888      5788889999999998875 5667777766655443


No 8  
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=20.65  E-value=82  Score=22.45  Aligned_cols=49  Identities=10%  Similarity=-0.015  Sum_probs=34.5

Q ss_pred             CchhHHHHHHHHhhHHHHHHHHH-hcCC-CcchhhhhHHHHHHhcCCC-ChhhHHHHh
Q 009345          104 LPAKYMQLAECFDSLDAVIRLLK-LKCS-SPTFTSICPKIECLTDRRF-SLGHLAQLK  158 (537)
Q Consensus       104 LP~KYe~LaElFr~LDTVVsML~-nRkE-~iTF~KLK~aVE~MTRRnF-sesHLAQIK  158 (537)
                      |....+.|.++|+.+|      . ++.- .++...++..+........ +...+.+|.
T Consensus         2 l~~~~~~l~~~F~~~D------~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~   53 (78)
T 1cb1_A            2 AQKSPAELKSIFEKYA------AKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLF   53 (78)
T ss_dssp             CSCCHHHHHHHHHHHH------TTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHH
T ss_pred             hhhHHHHHHHHHHHHh------ccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            3445677889999988      4 6666 8999999999987555544 554444443


No 9  
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=19.82  E-value=1.5e+02  Score=23.23  Aligned_cols=48  Identities=8%  Similarity=0.122  Sum_probs=37.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhhc
Q 009345          108 YMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFIL  161 (537)
Q Consensus       108 Ye~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~Iy  161 (537)
                      .+.|.++|+.+|      .++...++..+++..++.+.+..++...+.+|...+
T Consensus        87 ~~~~~~~F~~~D------~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~  134 (153)
T 3ox6_A           87 VKELRDAFREFD------TNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV  134 (153)
T ss_dssp             HHHHHHHHHHHC------TTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC------CCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence            355666666666      467789999999999999888889998888776654


No 10 
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=19.79  E-value=1.2e+02  Score=22.57  Aligned_cols=49  Identities=14%  Similarity=0.099  Sum_probs=37.9

Q ss_pred             chhHHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHhcCCCChhhHHHHhhh
Q 009345          105 PAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFI  160 (537)
Q Consensus       105 P~KYe~LaElFr~LDTVVsML~nRkE~iTF~KLK~aVE~MTRRnFsesHLAQIK~I  160 (537)
                      +...+.|.++|+.+|      .++.-.++...++..+..+ ...++...+.+|...
T Consensus         5 ~~~~~~l~~~F~~~D------~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~   53 (92)
T 2kn2_A            5 TDAEEELKEAFKVFD------KDQNGYISASELRHVMINL-GEKLTDEEVEQMIKE   53 (92)
T ss_dssp             CHHHHHHHHHHHHHC------TTCSSEECHHHHHHHHHHT-TCCCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHC------CCCCCeEcHHHHHHHHHHh-CCCCCHHHHHHHHHH
Confidence            456678999999998      5788889999999998876 556777776665443


Done!