BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009348
         (537 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
           Lgtc
          Length = 311

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 47/223 (21%)

Query: 306 AGANLS--DTTPRTFAS-KLQARSPKYISLLNHLRIYIPELFPHLDKVVFLDDDIVIQRD 362
            G N+   D  P  FA   L  R   +IS+  + R+ + E     DKV++LD D++++  
Sbjct: 55  GGGNIRFIDVNPEDFAGFPLNIR---HISITTYARLKLGEYIADCDKVLYLDIDVLVRDS 111

Query: 363 LSPLWEIDLGGKVNGA-----VETCRGEDEWVMSKRFRNYFNFSHPLIAKHLDPEECAWA 417
           L+PLW+ DLG    GA     VE   G  + +       YFN                  
Sbjct: 112 LTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFN------------------ 153

Query: 418 YGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHL 477
            G+ + +L+ WR+ +I +    W+++    ++  ++   +   L  FKG V   +  ++ 
Sbjct: 154 AGVLLINLKKWRRHDIFKMSCEWVEQ--YKDVMQYQDEDILNGL--FKGGVCYANSRFNF 209

Query: 478 LGLGYQ--------------NKTSIESVKKAAVIHYNGQSKPW 506
           +   Y                +    +V   AV HY G +KPW
Sbjct: 210 MPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPW 252


>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
           With Mn And Udp-2f-Galactose
 pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
           With Donor And Acceptor Sugar Analogs
          Length = 311

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 47/223 (21%)

Query: 306 AGANLS--DTTPRTFAS-KLQARSPKYISLLNHLRIYIPELFPHLDKVVFLDDDIVIQRD 362
            G N+   D  P  FA   L  R   +IS+  + R+ + E     DKV++LD D++++  
Sbjct: 55  GGGNIRFIDVNPEDFAGFPLNIR---HISITTYARLKLGEYIADCDKVLYLDIDVLVRDS 111

Query: 363 LSPLWEIDLGGKVNGA-----VETCRGEDEWVMSKRFRNYFNFSHPLIAKHLDPEECAWA 417
           L+PLW+ DLG    GA     VE   G  + +       YFN                  
Sbjct: 112 LTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGXADGEYYFN------------------ 153

Query: 418 YGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHL 477
            G+ + +L+ WR+ +I +    W+++    ++  ++   +   L  FKG V   +  ++ 
Sbjct: 154 AGVLLINLKKWRRHDIFKXSSEWVEQ--YKDVXQYQDQDILNGL--FKGGVCYANSRFNF 209

Query: 478 LGLGYQ--------------NKTSIESVKKAAVIHYNGQSKPW 506
               Y                +    +V   AV HY G +KPW
Sbjct: 210 XPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVSHYCGPAKPW 252


>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
           With Dna
 pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
           With Dna
 pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
           With Dna
 pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
           With Dna
 pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
           With Dna And Amp
 pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
           With Dna And Amp
 pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
           With Dna And Amp
 pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
           With Dna And Amp
          Length = 204

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 5/39 (12%)

Query: 329 YISLLNHLRIYI--PELFPHLDKVVFLDDDIVIQRDLSP 365
           ++S  ++L++YI  PE +     V++ DDD+V+ RD+ P
Sbjct: 3   HMSFRDNLKVYIESPESY---KNVIYYDDDVVLVRDMFP 38


>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
           Schizosaccharomyces Pombe
 pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
           Schizosaccharomyces Pombe
          Length = 204

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 5/39 (12%)

Query: 329 YISLLNHLRIYI--PELFPHLDKVVFLDDDIVIQRDLSP 365
           ++S  ++L++YI  PE +     V++ DDD+V+ RD+ P
Sbjct: 3   HMSFRDNLKVYIESPESY---KNVIYYDDDVVLVRDMFP 38


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,817,372
Number of Sequences: 62578
Number of extensions: 640545
Number of successful extensions: 1654
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1648
Number of HSP's gapped (non-prelim): 11
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)