Query 009348
Match_columns 537
No_of_seqs 299 out of 1288
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 8.7E-46 3E-50 374.6 17.5 257 210-529 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 6.2E-41 2.1E-45 343.7 16.8 249 211-522 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 2.2E-26 7.4E-31 238.6 13.6 226 210-524 4-255 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 7.2E-25 2.4E-29 220.3 11.7 136 332-509 82-224 (263)
5 1o7q_A N-acetyllactosaminide a 34.5 88 0.003 31.3 7.4 124 341-478 133-261 (289)
6 3pmr_A Amyloid-like protein 1; 26.9 1.1E+02 0.0037 29.4 6.3 28 134-161 66-93 (219)
7 1x4t_A Hypothetical protein LO 22.8 21 0.00072 29.8 0.4 30 69-110 18-48 (92)
8 3lay_A Zinc resistance-associa 22.3 3.9E+02 0.013 24.5 9.1 16 158-173 132-147 (175)
9 3umh_A Amyloid beta A4 protein 20.0 1.8E+02 0.006 27.8 6.2 28 134-161 59-86 (211)
10 1iap_A Guanine nucleotide exch 14.9 12 0.00043 35.7 -3.1 37 222-259 17-56 (211)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=8.7e-46 Score=374.55 Aligned_cols=257 Identities=16% Similarity=0.257 Sum_probs=182.0
Q ss_pred ccEEEEEeCCCc--chhHHHHHHhhccCCCCceEEEEEeCCcchhhhhhhhccCCCCcceeeeecccccccccccchhhH
Q 009348 210 YHHFILSTDNIL--AASVVVTSAVQSSLKPEKIVFHVITDKKTYAGMHSWFALNPVSPAIVEVKGIHQFDWLTRENVPVL 287 (537)
Q Consensus 210 ~ihIa~~sDn~l--a~sVvI~Sil~ns~~p~~l~FHIvtd~~~~~amk~Wf~~n~~~~a~v~v~~l~~F~~l~~~~~p~l 287 (537)
.+|||+++|+.| +++|+|+|++.|+++ ++++|||++++++.+..+. |
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~------------------------------L 53 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKD------------------------------L 53 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHH------------------------------H
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHH------------------------------H
Confidence 489999999988 799999999999985 6799999999988654321 1
Q ss_pred HhhhhccCeeeeecCCccccccCCCCCchhhhhhhhc-cCCCCCchhhHHHHhhccccC-CCCeEEEEecCeeEeCCchh
Q 009348 288 EAVENHDGIRNYYHGNHVAGANLSDTTPRTFASKLQA-RSPKYISLLNHLRIYIPELFP-HLDKVVFLDDDIVIQRDLSP 365 (537)
Q Consensus 288 ~~l~~~~~i~~~f~~~~~~~~~~~d~~~~~~~~~l~~-~~~~~~S~~~y~Rf~iPellP-~ldKVLYLD~DvIV~~DLse 365 (537)
+++.....+++.+.. + .+. .++. ...+++|..+|+||++|+++| +++||||||+|+||++||++
T Consensus 54 ~~~~~~~~~~i~~~~-------~---~~~----~~~~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~ 119 (276)
T 3tzt_A 54 GEDLKKFSYTLYPIR-------A---TDD----LFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDD 119 (276)
T ss_dssp HHHHHTTTCEEEEEE-------C---C-----------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHH
T ss_pred HHHHHHcCCEEEEEE-------e---CHH----HHhcCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHH
Confidence 111111112222221 0 000 0111 123578999999999999999 59999999999999999999
Q ss_pred hHhcCCCCceeEeeecccCCchhhhhhhhccccCCCchhhhcCCCCCCCcccccceeeecHHHHHhhHHHHHHHHHHHhc
Q 009348 366 LWEIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKHLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENL 445 (537)
Q Consensus 366 Lw~iDL~g~viaAV~d~~~~~~~~~~~~~~~yln~s~p~i~~~~~~~~~yfNSGVlLinL~~wR~~~it~~~~~~l~~~~ 445 (537)
||++|++|+++|||+||.... ..++.+ ..+++...||||||||||||++||+.+++++++++++++.
T Consensus 120 L~~~dl~~~~~aav~d~~~~~-------~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~ 186 (276)
T 3tzt_A 120 LLRTDISDYILAAASHTGKTD-------MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNH 186 (276)
T ss_dssp HHTCCCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-
T ss_pred HhhcCCCCCeEEEEEecccch-------HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcc
Confidence 999999999999999997531 111111 1234444699999999999999999999999999998874
Q ss_pred cCCCcccCcCCccHHHhhccCcEEEcCC-cccccccccCC--------ccch-hhcCCceEEEecCCCCCcccCCCCCCH
Q 009348 446 KSNLTMWKLGTLPPALIAFKGHVHPIDP-SWHLLGLGYQN--------KTSI-ESVKKAAVIHYNGQSKPWLQIGFEHLR 515 (537)
Q Consensus 446 ~~~~~~~DQd~L~~~nl~f~g~i~~Ld~-~WN~~~lgy~~--------~~~~-~~i~~~~IIHf~G~~KPW~~~~~~~y~ 515 (537)
..+.++|||+| |.+|++++++||+ +||+++. +.. ..+. +..++|+||||+|..|||...+.++|+
T Consensus 187 -~~~~~~DQd~L---N~~f~~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~ 261 (276)
T 3tzt_A 187 -MNLLLPDQDIL---NAMYGDRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFT 261 (276)
T ss_dssp --------CHHH---HHHHGGGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTH
T ss_pred -ccccCCChhHH---HHHHhCCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchH
Confidence 34678999999 7999999999999 9999862 210 1111 345789999999999999999989999
Q ss_pred HHHHHHHhhChhhh
Q 009348 516 PFWAKYVNYSNDFV 529 (537)
Q Consensus 516 ~lW~~Yl~~~~~~l 529 (537)
++||+|++..+++|
T Consensus 262 ~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 262 SLYKHYMSLTKRYL 275 (276)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998886
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=6.2e-41 Score=343.71 Aligned_cols=249 Identities=21% Similarity=0.337 Sum_probs=185.5
Q ss_pred cEEEEEeCCCc--chhHHHHHH-hhccCCCCceEEEEEeCCcchhhhhhhhccCCCCcceeeeecccccccccccchhhH
Q 009348 211 HHFILSTDNIL--AASVVVTSA-VQSSLKPEKIVFHVITDKKTYAGMHSWFALNPVSPAIVEVKGIHQFDWLTRENVPVL 287 (537)
Q Consensus 211 ihIa~~sDn~l--a~sVvI~Si-l~ns~~p~~l~FHIvtd~~~~~amk~Wf~~n~~~~a~v~v~~l~~F~~l~~~~~p~l 287 (537)
+||++++|+.| +++|+++|+ +.|++ .+++|||++++++.+..+..
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L------------------------------ 48 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAV------------------------------ 48 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHH------------------------------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHH------------------------------
Confidence 69999999987 689999999 99874 56999999999886643211
Q ss_pred HhhhhccCeeeeecCCccccccCCCCCchhhhhhhhcc--CCCCCchhhHHHHhhccccCCCCeEEEEecCeeEeCCchh
Q 009348 288 EAVENHDGIRNYYHGNHVAGANLSDTTPRTFASKLQAR--SPKYISLLNHLRIYIPELFPHLDKVVFLDDDIVIQRDLSP 365 (537)
Q Consensus 288 ~~l~~~~~i~~~f~~~~~~~~~~~d~~~~~~~~~l~~~--~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLse 365 (537)
+++.......+.+.. ..+. .++.. ..+++|..+|+||++|++||+++||||||+|+||++||++
T Consensus 49 ~~~~~~~~~~i~~~~----------~~~~----~~~~~~~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~e 114 (311)
T 1g9r_A 49 AANLRGGGGNIRFID----------VNPE----DFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTP 114 (311)
T ss_dssp HHHSGGGTTTEEEEE----------CCGG----GGTTSCCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHH
T ss_pred HHHHHHcCCEEEEEE----------cCHH----HHhcCccccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHH
Confidence 111000011111110 0000 11111 2467899999999999999999999999999999999999
Q ss_pred hHhcCCCCceeEeeecccCCchhhhhhhhccccCCCchhhhcCCCCCCCcccccceeeecHHHHHhhHHHHHHHHHHHhc
Q 009348 366 LWEIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKHLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENL 445 (537)
Q Consensus 366 Lw~iDL~g~viaAV~d~~~~~~~~~~~~~~~yln~s~p~i~~~~~~~~~yfNSGVlLinL~~wR~~~it~~~~~~l~~~~ 445 (537)
||++|++|+++|||+||.... ...+...+ ++++..+||||||||||+++||+.++++++++|++++.
T Consensus 115 L~~~~l~~~~~aav~d~~~~~----~~~~~~~~---------~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~ 181 (311)
T 1g9r_A 115 LWDTDLGDNWLGASIDLFVER----QEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYK 181 (311)
T ss_dssp HHTCCCTTCSEEEEECHHHHT----STTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHT
T ss_pred HhccCCCCcEEEEEeccchhh----hHHHHHhc---------CCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhcc
Confidence 999999999999999986310 01112222 34456789999999999999999999999999999874
Q ss_pred cCCCcccCcCCccHHHhhccCcEEEcCCcccccccccCC------cc-------ch-hhcCCceEEEecCCCCCcccCCC
Q 009348 446 KSNLTMWKLGTLPPALIAFKGHVHPIDPSWHLLGLGYQN------KT-------SI-ESVKKAAVIHYNGQSKPWLQIGF 511 (537)
Q Consensus 446 ~~~~~~~DQd~L~~~nl~f~g~i~~Ld~~WN~~~lgy~~------~~-------~~-~~i~~~~IIHf~G~~KPW~~~~~ 511 (537)
. ...+.|||+| |.+|.+++..||.+||++..++.. +. .. +..++++||||+|+.|||...+.
T Consensus 182 ~-~~~~~DQd~l---N~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~ 257 (311)
T 1g9r_A 182 D-VMQYQDQDIL---NGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCT 257 (311)
T ss_dssp T-TCSSHHHHHH---HHHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCC
T ss_pred C-cCccCCcCHH---HHHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCC
Confidence 3 4678999998 689999999999999998543210 00 01 22357899999999999998887
Q ss_pred CCCHHHHHHHH
Q 009348 512 EHLRPFWAKYV 522 (537)
Q Consensus 512 ~~y~~lW~~Yl 522 (537)
++..++|..+.
T Consensus 258 ~~~~~~~~~~~ 268 (311)
T 1g9r_A 258 AWGAERFTELA 268 (311)
T ss_dssp STTTHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 77777777665
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.93 E-value=2.2e-26 Score=238.63 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=151.6
Q ss_pred ccEEEEEeCCCc--chhHHHHHHhhccCCCCceEEEEEeCCcchhhhhhhhccCCCCcceeeeecccccccccccchhhH
Q 009348 210 YHHFILSTDNIL--AASVVVTSAVQSSLKPEKIVFHVITDKKTYAGMHSWFALNPVSPAIVEVKGIHQFDWLTRENVPVL 287 (537)
Q Consensus 210 ~ihIa~~sDn~l--a~sVvI~Sil~ns~~p~~l~FHIvtd~~~~~amk~Wf~~n~~~~a~v~v~~l~~F~~l~~~~~p~l 287 (537)
..+|++++|+.| ++.|++.|+..|+++ ..++| +++++++.+..+..-... . .|..++
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~--~v~~v~------------- 62 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----D--EVITVD------------- 62 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----S--EEEECC-------------
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----C--EEEEEe-------------
Confidence 567888998877 688899999999864 45666 677777655332111000 0 011000
Q ss_pred HhhhhccCeeeeecCCccccccCCCCCchhhhhhhhccCCCCCchhhHHHHhhccccCCCCeEEEEecCeeEeCCchhhH
Q 009348 288 EAVENHDGIRNYYHGNHVAGANLSDTTPRTFASKLQARSPKYISLLNHLRIYIPELFPHLDKVVFLDDDIVIQRDLSPLW 367 (537)
Q Consensus 288 ~~l~~~~~i~~~f~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw 367 (537)
... ...+ .++.... ...+..+|+||++|++ ++++||||||+|+||.+||++||
T Consensus 63 ------------~l~---------~~~~----~~~~~~~-~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf 115 (333)
T 1ll2_A 63 ------------ILD---------SGDS----AHLTLMK-RPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLF 115 (333)
T ss_dssp ------------TTS---------TTST----THHHHHH-CGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGG
T ss_pred ------------ecC---------Ccch----hhccccc-ccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHh
Confidence 000 0000 0111000 1124689999999996 78999999999999999999999
Q ss_pred hcCCCCceeEeeecccCCchhhhhhhhccccCCCchhhhcCCCCCCCcccccceeeecHHHHHhhHHHHHHHHHHHhccC
Q 009348 368 EIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKHLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKS 447 (537)
Q Consensus 368 ~iDL~g~viaAV~d~~~~~~~~~~~~~~~yln~s~p~i~~~~~~~~~yfNSGVlLinL~~wR~~~it~~~~~~l~~~~~~ 447 (537)
+++ .+|||+|.+. .+||||||||||++. +..++++++++++.
T Consensus 116 ~~~----~~aAv~d~~~----------------------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~-- 157 (333)
T 1ll2_A 116 ERE----ELSAAPDPGW----------------------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQG-- 157 (333)
T ss_dssp GSC----SSEEEECSSS----------------------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTC--
T ss_pred CCC----ceeEEecCCC----------------------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcC--
Confidence 986 4788887421 258999999998863 34566777777652
Q ss_pred CCcccCcCCccHHHhhccCcE-----EEcCCcccccccc-cCCccch-hhcCCceEEEecCCCCCcccCCCC--------
Q 009348 448 NLTMWKLGTLPPALIAFKGHV-----HPIDPSWHLLGLG-YQNKTSI-ESVKKAAVIHYNGQSKPWLQIGFE-------- 512 (537)
Q Consensus 448 ~~~~~DQd~L~~~nl~f~g~i-----~~Ld~~WN~~~lg-y~~~~~~-~~i~~~~IIHf~G~~KPW~~~~~~-------- 512 (537)
.+.+.|||+| |.+|.+.+ ..||.+||++... |...... ...++++||||+|..|||...+.+
T Consensus 158 ~~~~~DQ~~L---N~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~ 234 (333)
T 1ll2_A 158 SFDGGDQGLL---NTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSE 234 (333)
T ss_dssp CTTSSHHHHH---HHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--
T ss_pred CCCCCCHHHH---HHHHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccc
Confidence 4678899999 67887644 7999999998542 3321111 235789999999999999876332
Q ss_pred ---------CCHHHHHHHHhh
Q 009348 513 ---------HLRPFWAKYVNY 524 (537)
Q Consensus 513 ---------~y~~lW~~Yl~~ 524 (537)
.+.+.||++.+.
T Consensus 235 ~~~~~~~~~~~~~~WW~~~~~ 255 (333)
T 1ll2_A 235 GHDPTMTHPQFLNVWWDIFTT 255 (333)
T ss_dssp ------CCHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHh
Confidence 346789987763
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.91 E-value=7.2e-25 Score=220.34 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=109.5
Q ss_pred hhhHHHHhhccccCCCCeEEEEecCeeEeCCchhhHhcCCCCceeEeeecccCCchhhhhhhhccccCCCchhhhcCCCC
Q 009348 332 LLNHLRIYIPELFPHLDKVVFLDDDIVIQRDLSPLWEIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKHLDP 411 (537)
Q Consensus 332 ~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~viaAV~d~~~~~~~~~~~~~~~yln~s~p~i~~~~~~ 411 (537)
..+|.|++++++.+ ++||||||+|++|.+||++||+++ .+|||+|.+.
T Consensus 82 ~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~~--------------------------- 129 (263)
T 3u2u_A 82 GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPGW--------------------------- 129 (263)
T ss_dssp GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEECTTS---------------------------
T ss_pred hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEeccCCC---------------------------
Confidence 46899999999874 999999999999999999999987 4788887431
Q ss_pred CCCcccccceeeecHHHHHhhHHHHHHHHHHHhccCCCcccCcCCccHHHhhccC-----cEEEcCCcccccc-cccCCc
Q 009348 412 EECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKG-----HVHPIDPSWHLLG-LGYQNK 485 (537)
Q Consensus 412 ~~~yfNSGVlLinL~~wR~~~it~~~~~~l~~~~~~~~~~~DQd~L~~~nl~f~g-----~i~~Ld~~WN~~~-lgy~~~ 485 (537)
..||||||||||++ .++.+++++++++.. ...++|||+| |.+|.+ +++.||.+||++. ..|...
T Consensus 130 -~~~fNsGv~li~p~----~~~~~~l~~~~~~~~--~~~~~DQd~L---N~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~ 199 (263)
T 3u2u_A 130 -PDCFNSGVFVYQPS----VETYNQLLHLASEQG--SFDGGDQGIL---NTFFSSWATTDIRKHLPFIYNLSSISIYSYL 199 (263)
T ss_dssp -TTSEEEEEEEECCC----HHHHHHHHHHHHHHC--CTTSSHHHHH---HHHTTTTTTSCGGGBCCGGGSEEHHHHHSSH
T ss_pred -CccccCeEEEEccc----HHHHHHHHHHHHhcC--CCCcccHHHH---HHHhccccccCeeEeCCcccccccchhcccc
Confidence 14899999999986 457778888887653 4678999999 688987 8899999999974 234322
Q ss_pred cch-hhcCCceEEEecCCCCCcccC
Q 009348 486 TSI-ESVKKAAVIHYNGQSKPWLQI 509 (537)
Q Consensus 486 ~~~-~~i~~~~IIHf~G~~KPW~~~ 509 (537)
... +..++++||||+|..|||...
T Consensus 200 ~~~~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 200 PAFKVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp HHHHHHGGGCSEEECCSSSCGGGSE
T ss_pred HHHHhhcCCeEEEEECCCCcCCCCC
Confidence 122 335789999999999999875
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=34.46 E-value=88 Score=31.26 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=72.1
Q ss_pred ccccCCCCeEEEEecCeeEeCCchhhHhcCCCCceeEeeecccCCchhhhhhhhccccCC-Cchhhhc--CCCCCCCccc
Q 009348 341 PELFPHLDKVVFLDDDIVIQRDLSPLWEIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNF-SHPLIAK--HLDPEECAWA 417 (537)
Q Consensus 341 PellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~viaAV~d~~~~~~~~~~~~~~~yln~-s~p~i~~--~~~~~~~yfN 417 (537)
.+++.++|-+.++|+|+++++++..= .| |..+|...--.-.. . ..-+.+ .+|.=.. .++.+..|+.
T Consensus 133 ~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~----~---~~~fpYERrp~S~AyIp~~eGdfYY~ 201 (289)
T 1o7q_A 133 AHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKA----D---PNDFTYERRKESAAYIPFGEGDFYYH 201 (289)
T ss_dssp HTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTS----C---GGGSCCCCCTTSTTCCCTTCCSCCEE
T ss_pred HHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCC----C---CCCCCCCCCcCceeeecCCCCCEEEE
Confidence 55566899999999999999998542 23 45676665432110 0 000110 1121000 2566788999
Q ss_pred ccceeeecHHHHHhhHHHHHHHHHHHhccCC--CcccCcCCccHHHhhccCcEEEcCCccccc
Q 009348 418 YGMNIFDLRAWRKTNIRETYHSWLKENLKSN--LTMWKLGTLPPALIAFKGHVHPIDPSWHLL 478 (537)
Q Consensus 418 SGVlLinL~~wR~~~it~~~~~~l~~~~~~~--~~~~DQd~L~~~nl~f~g~i~~Ld~~WN~~ 478 (537)
+|++==-..+--+ +++.|++-+.+-...+ -..+|..=||-.. ..+...+.|+++|.+.
T Consensus 202 Ga~fGGt~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf-~~~KPtKvLSPEY~wd 261 (289)
T 1o7q_A 202 AAIFGGTPTQVLN--ITQECFKGILKDKKNDIEAQWHDESHLNKYF-LLNKPTKILSPEYCWD 261 (289)
T ss_dssp EEEEEECHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBC
T ss_pred ceeeCCcHHHHHH--HHHHHHHHHHHHHhCCeEEEecchhhhhHHH-hhcCCCEEECHHHCCC
Confidence 9988544444433 6777776665432212 2455777775322 2355678899999875
No 6
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=26.92 E-value=1.1e+02 Score=29.38 Aligned_cols=28 Identities=7% Similarity=0.282 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009348 134 DAKTFGFMLRAMMEKFEREIRESKFAEL 161 (537)
Q Consensus 134 d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 161 (537)
|-++++....+++.++|++....|+|-.
T Consensus 66 dkk~m~~rFQ~~v~aLE~E~~~ErqqL~ 93 (219)
T 3pmr_A 66 DRQALNEHFQSILQTLEEQVSGERQRLV 93 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3468899999999999999998777643
No 7
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=22.78 E-value=21 Score=29.79 Aligned_cols=30 Identities=13% Similarity=0.390 Sum_probs=18.2
Q ss_pred CCcCCc-cccccccCCccccccCCchHHHHHHHHHHhHhhcCC
Q 009348 69 DKCSSF-DCLGRRLGPRLLGRVDDSERLVKDFYKVLNQVDTEE 110 (537)
Q Consensus 69 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (537)
+.|.++ +|--|| .++++|+.+-+.+++...
T Consensus 18 ~~v~~l~~AekWR------------~qvikEIs~Kv~~Iqn~~ 48 (92)
T 1x4t_A 18 SECTELPKAEKWR------------RQIIGEISKKVAQIQNAG 48 (92)
T ss_dssp TTCCCHHHHHHHH------------HHHHHHHHHHHHHHHHCC
T ss_pred hhcCCHHHHHHHH------------HHHHHHHHHHHHHhhCCC
Confidence 446555 666666 356666666666665533
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.31 E-value=3.9e+02 Score=24.47 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhccCCc
Q 009348 158 FAELMNKHFAASSIPK 173 (537)
Q Consensus 158 ~~~~~~~~la~~~~Pk 173 (537)
....+-.+++-.++|-
T Consensus 132 ~R~k~~~em~KeGip~ 147 (175)
T 3lay_A 132 QRVKRDVAMAQAGIPR 147 (175)
T ss_dssp HHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3344555787778885
No 9
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=20.03 E-value=1.8e+02 Score=27.78 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009348 134 DAKTFGFMLRAMMEKFEREIRESKFAEL 161 (537)
Q Consensus 134 d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 161 (537)
|-++++....+++.++|++....|+|-.
T Consensus 59 dkk~~~~rFQ~~v~aLE~E~~~ErqqL~ 86 (211)
T 3umh_A 59 DKKAVIQHFQEKVESLEQEAANERQQLV 86 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5679999999999999999998777643
No 10
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=14.88 E-value=12 Score=35.65 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=31.6
Q ss_pred chhHHHHHHhhccCCCCceEEEEEeC---Ccchhhhhhhhc
Q 009348 222 AASVVVTSAVQSSLKPEKIVFHVITD---KKTYAGMHSWFA 259 (537)
Q Consensus 222 a~sVvI~Sil~ns~~p~~l~FHIvtd---~~~~~amk~Wf~ 259 (537)
+++|-++=++.|+ +|..+-||++|| ..|...|+.||.
T Consensus 17 HLaVFL~yV~sq~-DPspLLfYL~tdlYk~~~~Ke~rk~~~ 56 (211)
T 1iap_A 17 HLMALLQHVALQF-EPGPLLCCLHADMLGSLGPKEAKKAFL 56 (211)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CchhhHHHHHHHHHhccChHHHHHHHH
Confidence 4799999999988 689999999998 456778999974
Done!