Query 009349
Match_columns 537
No_of_seqs 182 out of 314
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npp_B PP2A, B subunit, serine 100.0 7E-137 3E-141 1095.9 27.6 415 105-519 26-441 (449)
2 3fga_B Serine/threonine-protei 100.0 2E-135 7E-140 1070.8 36.1 401 113-513 1-402 (403)
3 2jak_A Serine/threonine-protei 100.0 2E-121 8E-126 960.9 35.5 354 105-458 38-392 (392)
4 1ibr_B P95, importin beta-1 su 95.2 1.1 3.6E-05 45.4 18.5 221 242-480 3-249 (462)
5 1qgr_A Protein (importin beta 94.5 7.1 0.00024 43.0 25.5 233 241-478 218-480 (876)
6 2bpt_A Importin beta-1 subunit 94.0 8.9 0.0003 42.1 26.1 232 241-477 225-482 (861)
7 4fdd_A Transportin-1; heat rep 92.6 2.6 9E-05 47.1 17.0 226 242-484 15-251 (852)
8 2qk2_A LP04448P; mini spindles 92.2 2.4 8.3E-05 39.9 13.9 177 245-428 20-200 (242)
9 1qgr_A Protein (importin beta 91.9 15 0.0005 40.5 21.7 93 382-476 584-678 (876)
10 2bpt_A Importin beta-1 subunit 91.9 2.7 9.2E-05 46.3 15.7 92 381-476 575-667 (861)
11 2qk1_A Protein STU2; STU2P, XM 91.3 4.6 0.00016 39.0 15.0 177 246-428 22-215 (249)
12 2jdq_A Importin alpha-1 subuni 89.2 13 0.00043 37.3 16.8 234 231-477 98-347 (450)
13 4fdd_A Transportin-1; heat rep 87.4 40 0.0014 37.5 20.9 154 362-519 629-787 (852)
14 1u6g_C TIP120 protein, CAND1; 85.6 16 0.00055 42.6 17.0 248 144-428 20-279 (1230)
15 2x19_B Importin-13; nuclear tr 83.3 22 0.00076 40.0 16.4 203 243-488 689-905 (963)
16 2km4_A Regulator of TY1 transp 82.6 2.2 7.6E-05 38.3 6.3 86 347-432 23-117 (142)
17 4b8j_A Importin subunit alpha- 81.5 37 0.0013 35.2 16.2 235 230-478 150-401 (528)
18 1wa5_B Importin alpha subunit; 78.7 22 0.00076 37.1 13.4 231 232-477 165-412 (530)
19 1u6g_C TIP120 protein, CAND1; 78.5 31 0.0011 40.2 15.8 100 377-478 492-599 (1230)
20 1ibr_B P95, importin beta-1 su 78.4 56 0.0019 32.5 17.4 208 242-454 219-458 (462)
21 4fu3_A Regulation of nuclear P 76.2 3.7 0.00013 36.0 5.5 87 344-430 21-113 (135)
22 2of3_A ZYG-9; multifunctional 75.3 30 0.001 34.3 12.5 105 382-490 66-176 (266)
23 2vgl_B AP-2 complex subunit be 74.5 31 0.001 37.1 13.4 175 240-429 353-528 (591)
24 4hxt_A De novo protein OR329; 71.0 53 0.0018 29.6 12.4 190 230-430 34-238 (252)
25 4db6_A Armadillo repeat protei 71.0 30 0.001 30.9 10.5 181 237-429 9-205 (210)
26 1wa5_B Importin alpha subunit; 67.8 1E+02 0.0035 31.9 15.3 224 242-482 89-333 (530)
27 2qk1_A Protein STU2; STU2P, XM 63.4 33 0.0011 32.9 9.6 87 385-477 127-220 (249)
28 4b8j_A Importin subunit alpha- 62.5 1.2E+02 0.004 31.4 14.4 226 242-481 76-319 (528)
29 1sz9_A PCF11 protein; RNA poly 61.1 15 0.00052 33.0 6.3 90 342-431 23-115 (144)
30 1w63_A Adapter-related protein 58.3 1.3E+02 0.0045 32.4 14.4 26 404-429 548-573 (618)
31 3tjz_B Coatomer subunit gamma; 56.7 1E+02 0.0035 31.6 12.4 161 295-491 59-219 (355)
32 4hxt_A De novo protein OR329; 56.4 1.1E+02 0.0038 27.4 17.7 220 242-480 4-244 (252)
33 1w63_A Adapter-related protein 55.4 2.2E+02 0.0077 30.6 18.0 140 327-483 425-582 (618)
34 4db8_A Armadillo-repeat protei 50.7 1.4E+02 0.0049 27.0 14.5 36 234-269 48-83 (252)
35 4flb_A Regulation of nuclear P 50.0 31 0.0011 29.9 6.3 87 344-430 22-112 (132)
36 2vgl_A Adaptor protein complex 49.3 1.6E+02 0.0054 32.1 13.2 83 342-429 493-585 (621)
37 2vgl_B AP-2 complex subunit be 48.9 2.3E+02 0.008 30.1 14.3 30 345-374 204-233 (591)
38 1b3u_A Protein (protein phosph 47.1 2.5E+02 0.0086 28.7 15.0 27 242-268 12-38 (588)
39 3ibv_A Exportin-T; karyopherin 46.2 57 0.0019 37.8 9.4 213 242-476 8-259 (980)
40 2jdq_A Importin alpha-1 subuni 45.0 2.4E+02 0.0081 27.8 20.0 223 237-480 60-308 (450)
41 3m1i_C Exportin-1; heat repeat 42.8 1.7E+02 0.0059 33.5 12.8 220 237-478 13-264 (1049)
42 2x1g_F Cadmus; transport prote 41.3 1.9E+02 0.0063 32.6 12.6 50 381-430 804-855 (971)
43 1vdy_A Hypothetical protein (R 39.0 34 0.0012 30.8 4.8 100 371-479 25-132 (140)
44 3u0r_A Apoptosis inhibitor 5; 37.9 4.2E+02 0.014 28.6 16.6 57 359-415 261-323 (507)
45 1eyh_A Epsin; superhelix of he 37.7 79 0.0027 28.4 7.1 88 386-476 26-121 (144)
46 3gjx_A Exportin-1; transport, 37.1 4.3E+02 0.015 31.0 15.0 32 237-268 25-56 (1073)
47 3onk_A Epsin-3, ENT3; helix, p 33.8 2.1E+02 0.0071 25.9 9.2 92 386-482 32-132 (150)
48 3m1i_C Exportin-1; heat repeat 30.9 4.6E+02 0.016 29.9 13.8 50 381-430 823-875 (1049)
49 1wa5_C Importin alpha RE-expor 29.0 6.6E+02 0.023 28.2 17.5 72 316-392 77-153 (960)
50 1oks_A RNA polymerase alpha su 28.8 43 0.0015 25.5 3.0 46 304-351 5-50 (56)
51 3gs3_A Symplekin, LD45768P; he 27.7 2.8E+02 0.0096 27.0 9.7 100 345-464 36-143 (257)
52 3ibv_A Exportin-T; karyopherin 27.6 90 0.0031 36.2 7.1 82 243-334 705-787 (980)
53 3ul1_B Importin subunit alpha- 27.5 5.3E+02 0.018 26.6 15.8 63 229-291 132-195 (510)
54 3d9j_A RNA-binding protein 16; 25.9 1E+02 0.0035 27.4 5.7 85 344-429 24-118 (145)
55 2x1g_F Cadmus; transport prote 25.8 7.3E+02 0.025 27.7 19.9 213 209-428 541-809 (971)
56 3bbz_A P protein, phosphoprote 25.1 65 0.0022 24.1 3.4 32 112-152 15-46 (49)
57 3opb_A SWI5-dependent HO expre 23.6 8.5E+02 0.029 27.7 14.1 73 212-290 18-106 (778)
58 1wa5_C Importin alpha RE-expor 22.6 8.5E+02 0.029 27.3 23.0 33 239-271 122-154 (960)
59 1x5b_A Signal transducing adap 22.0 3.5E+02 0.012 24.4 8.6 77 349-428 39-120 (163)
No 1
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=7.5e-137 Score=1095.94 Aligned_cols=415 Identities=47% Similarity=0.880 Sum_probs=383.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCcccccc-cCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccc
Q 009349 105 PHLSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFR 183 (537)
Q Consensus 105 ~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~Ke~K~~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NIFR 183 (537)
+||+|+|||++|+++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++|+++++||++||||
T Consensus 26 ~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR 105 (449)
T 2npp_B 26 VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFR 105 (449)
T ss_dssp ------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHHCC
T ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHH
Q 009349 184 VFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTV 263 (537)
Q Consensus 184 ~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdSeDpRERd~Lkti 263 (537)
++||.+++++..||+|||||++||+|||||+||++|+|||+|++++++++|+|||++||.+|+++||||||||||+|||+
T Consensus 106 ~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lkti 185 (449)
T 2npp_B 106 TLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTT 185 (449)
T ss_dssp CCCCCSSCCSSSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHH
T ss_pred CCCCCCCcccccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 99999888777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcccCCCCcccchh
Q 009349 264 LHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQ 343 (537)
Q Consensus 264 LhrIY~Kf~~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~ 343 (537)
||||||||+++|+|||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.||.+||||||++++++.||+
T Consensus 186 LhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~ 265 (449)
T 2npp_B 186 LHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHP 265 (449)
T ss_dssp HHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q 009349 344 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAER 423 (537)
Q Consensus 344 qL~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAEr 423 (537)
||+||++||++|||+|++.|++||+||||+|||+|||+||+||++||+.++|++|+++++|+|++||+|++|+|||||||
T Consensus 266 qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAEr 345 (449)
T 2npp_B 266 QLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAER 345 (449)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcChhHHHhhhhccccccccccHHHHHhhhhhccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhHHHHHHH
Q 009349 424 AHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAER 503 (537)
Q Consensus 424 AL~~w~N~~~~~li~~n~~~I~PiI~paL~~~sk~HWn~~Vr~la~~vlkiL~e~Dp~lF~~c~~~~~~~~~~~~~~~~~ 503 (537)
||++|+|++|+++|++|++.|+|+++|+|++++++|||++||++|++|+++|+||||++|++|+++|+++++++++++++
T Consensus 346 AL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~~~~~ 425 (449)
T 2npp_B 346 ALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKE 425 (449)
T ss_dssp HHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 009349 504 RKLTWERLESAASFQP 519 (537)
Q Consensus 504 r~~~W~~l~~~A~~~~ 519 (537)
|+++|++|+++|++++
T Consensus 426 r~~~W~~i~~~A~~~~ 441 (449)
T 2npp_B 426 REEAWVKIENLAKANP 441 (449)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999999887
No 2
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=2e-135 Score=1070.78 Aligned_cols=401 Identities=47% Similarity=0.895 Sum_probs=396.1
Q ss_pred ChHHHHHHHHHHHhcCcccccc-cCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccccCCCCCCC
Q 009349 113 SNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRS 191 (537)
Q Consensus 113 ~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~Ke~K~~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NIFR~lP~~~~~ 191 (537)
|++||++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++|+++++||++||||++||++++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 6789999999999999999999 899999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCccchhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhh
Q 009349 192 NGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKF 271 (537)
Q Consensus 192 ~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 271 (537)
++.+||+|||||++||+|||||+||++|+||++|++++++++|+|||++||++|+++||||||||||+|||+||||||||
T Consensus 81 ~~~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf 160 (403)
T 3fga_B 81 TGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 160 (403)
T ss_dssp CSTTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhh
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcccCCCCcccchhhHHHHHHH
Q 009349 272 MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQ 351 (537)
Q Consensus 272 ~~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~q 351 (537)
+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||+||+||++|
T Consensus 161 ~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~q 240 (403)
T 3fga_B 161 LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQ 240 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcCh
Q 009349 352 FIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNE 431 (537)
Q Consensus 352 Fv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~ 431 (537)
|++|||+|+..+++||+||||+|||+|||+||+||++||+.++|++|+++++|+|++||+|++|+|||||||||++|+|+
T Consensus 241 f~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe 320 (403)
T 3fga_B 241 FLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNE 320 (403)
T ss_dssp HHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH
T ss_pred HHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhccccccccccHHHHHhhhhhccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 009349 432 HILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERL 511 (537)
Q Consensus 432 ~~~~li~~n~~~I~PiI~paL~~~sk~HWn~~Vr~la~~vlkiL~e~Dp~lF~~c~~~~~~~~~~~~~~~~~r~~~W~~l 511 (537)
+|+++|++|++.|+|+++|+|++++++|||++|+++|++|+++||||||++|++|+++|+++++++++++++|+++|++|
T Consensus 321 ~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~~ 400 (403)
T 3fga_B 321 YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKI 400 (403)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 009349 512 ES 513 (537)
Q Consensus 512 ~~ 513 (537)
++
T Consensus 401 ~~ 402 (403)
T 3fga_B 401 EN 402 (403)
T ss_dssp SC
T ss_pred hc
Confidence 74
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=2.4e-121 Score=960.94 Aligned_cols=354 Identities=50% Similarity=0.929 Sum_probs=325.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCcccccc-cCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccc
Q 009349 105 PHLSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFR 183 (537)
Q Consensus 105 ~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~Ke~K~~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NIFR 183 (537)
+||+|+|+|++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++++++++||++||||
T Consensus 38 ~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR 117 (392)
T 2jak_A 38 VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFR 117 (392)
T ss_dssp ----CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHH
Q 009349 184 VFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTV 263 (537)
Q Consensus 184 ~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdSeDpRERd~Lkti 263 (537)
++||.+++.+..||+|||||+.||+|||||+||++|+||++|++++++++|+|||++||.+|+++||||||||||+||++
T Consensus 118 ~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lkti 197 (392)
T 2jak_A 118 TLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTT 197 (392)
T ss_dssp CCCC---------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCCCcccccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 99999887766799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcccCCCCcccchh
Q 009349 264 LHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQ 343 (537)
Q Consensus 264 LhrIY~Kf~~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~ 343 (537)
||||||||+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||++||.++|||||++++++.||+
T Consensus 198 LhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~ 277 (392)
T 2jak_A 198 LHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHP 277 (392)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q 009349 344 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAER 423 (537)
Q Consensus 344 qL~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAEr 423 (537)
||+||++||++|||+|++.|++||+||||+|||+|||+||+||++||+.+++++|+++++|+|++||+|++|+|||||||
T Consensus 278 qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAEr 357 (392)
T 2jak_A 278 QLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAER 357 (392)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcChhHHHhhhhccccccccccHHHHHhhhh
Q 009349 424 AHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQN 458 (537)
Q Consensus 424 AL~~w~N~~~~~li~~n~~~I~PiI~paL~~~sk~ 458 (537)
||++|+|++|+++|++|+++|+|+|||+|++++++
T Consensus 358 AL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 358 ALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHGGGGCHHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 99999999999999999999999999999999874
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.15 E-value=1.1 Score=45.35 Aligned_cols=221 Identities=11% Similarity=0.057 Sum_probs=125.7
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhh-hcc-------------chHHHHHHHHHHHhHhhhccCCccChHHHHHHHH
Q 009349 242 IVRLLDLFDSEDPRERDCLKTVLHRIYGK-FMA-------------HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFG 307 (537)
Q Consensus 242 i~~Ll~lfdSeDpRERd~LktiLhrIY~K-f~~-------------~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlg 307 (537)
+.+++..+.|+|+..|......|..+... ..+ ..+-+|....-.|-+++..... .+-.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~-~~~~~~~~--- 78 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-DIKAQYQQ--- 78 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-HHHHHHHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccch-HHHHHHHh---
Confidence 46778888899999998888877765431 111 1222333333333333311000 00000000
Q ss_pred HHHhccCCCchHHHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcC------CCcHHHHHHHhhccCCCC--CChhH
Q 009349 308 SIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD------PKLATNAIKGLLKYWPVT--NSQKE 379 (537)
Q Consensus 308 SIInGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KD------p~La~~vi~~LLk~WP~t--ns~KE 379 (537)
. + ..+.++.+..+...|+++.....-.. .++..|+..+...+ |.+.+.++..+- -. +....
T Consensus 79 -~---~-~~l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r 147 (462)
T 1ibr_B 79 -R---W-LAIDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMK 147 (462)
T ss_dssp -H---H-HTSCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHH
T ss_pred -h---h-hcCCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHH
Confidence 0 1 23567788888899999887766544 78999988876543 344444444442 22 33344
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCC--cHHHHHHHHHhhcChhHHHhhhhccc--cccccccHHHHHh
Q 009349 380 LMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSS--HYQVAERAHLLWNNEHILNLVTHNRQ--VIIPLVFPALERN 455 (537)
Q Consensus 380 vlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~--hfqVAErAL~~w~N~~~~~li~~n~~--~I~PiI~paL~~~ 455 (537)
..-+.-+..+.+...++.+......++..+..+++++ +..|-..|+..+.+ ++..+..+.. ...+.+.+.+.+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN--SLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH--HTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--HHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 4566677777776656666777788999999999998 77777777654433 0011111110 0112234444443
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhCH
Q 009349 456 TQNHWNQAVLNLTQNVRKILCEMDE 480 (537)
Q Consensus 456 sk~HWn~~Vr~la~~vlkiL~e~Dp 480 (537)
. .+=+..+|..+..++..+.+..+
T Consensus 226 ~-~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 226 T-QCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp T-TCSSHHHHHHHHHHHHHHHHHCG
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 33356888888888888876554
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.51 E-value=7.1 Score=42.98 Aligned_cols=233 Identities=10% Similarity=0.055 Sum_probs=127.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccC-----
Q 009349 241 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFA----- 314 (537)
Q Consensus 241 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa----- 314 (537)
++.-+.+.+.++|++.|...-.+|.++...+.. .++++.+.+-..+...... ....-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 455566778899999998888888887654432 3555552333333332211 111123345666666553210
Q ss_pred ---------C---CchH---HHHHHHHHHHhcccCCCC------cccchhhHHHHHHHHHhcCC-CcHHHHHHHhhccCC
Q 009349 315 ---------L---PLKE---EHKIFLCRALIPLHKPKS------VGIYHQQLTYCVVQFIDKDP-KLATNAIKGLLKYWP 372 (537)
Q Consensus 315 ---------~---PLKe---Ehk~Fl~rvLlPLHk~k~------~~~y~~qL~~ci~qFv~KDp-~La~~vi~~LLk~WP 372 (537)
. +... .+..-+...++.+..... -......-..|+....+..+ .+...++..+....-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~ 376 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHcc
Confidence 0 1111 111112233333332110 00111122333333333222 345556665555443
Q ss_pred CCCChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcChhHHHhhhhc--cccccccccH
Q 009349 373 VTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHN--RQVIIPLVFP 450 (537)
Q Consensus 373 ~tns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~~~~~li~~n--~~~I~PiI~p 450 (537)
-.+....-.-+.-+..+.+.+.++.+......+...+-.+++++|..|-.+|+..+.+ +...+... ....++.+++
T Consensus 377 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~l~~~l~ 454 (876)
T 1qgr_A 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR--ICELLPEAAINDVYLAPLLQ 454 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH--HHHHCGGGTSSTTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHhCchhcccHHHHHHHHH
Confidence 3444444455667777777777777777778888899999999999999998877643 33333321 2345567777
Q ss_pred HHHHhhhhhccHHHHHHHHHHHHHHHHh
Q 009349 451 ALERNTQNHWNQAVLNLTQNVRKILCEM 478 (537)
Q Consensus 451 aL~~~sk~HWn~~Vr~la~~vlkiL~e~ 478 (537)
.|.+....+ ..|+..+..++..+.+.
T Consensus 455 ~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 455 CLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 777766553 77888777777766643
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.98 E-value=8.9 Score=42.07 Aligned_cols=232 Identities=13% Similarity=0.108 Sum_probs=126.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccC-----
Q 009349 241 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFA----- 314 (537)
Q Consensus 241 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa----- 314 (537)
++..|...+.++|++.|...-.+|.++...+.. ..+++.+.+-..+...+... ...-....+++++.+.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344566778899999999888888888665543 44556534444444444322 22223456777777764310
Q ss_pred ------CC-----chHHHHHHHHHHHhcccCCCCc----ccc--hhhHHHHHHHHHhcCC-CcHHHHHHHhhccCCCCCC
Q 009349 315 ------LP-----LKEEHKIFLCRALIPLHKPKSV----GIY--HQQLTYCVVQFIDKDP-KLATNAIKGLLKYWPVTNS 376 (537)
Q Consensus 315 ------~P-----LKeEhk~Fl~rvLlPLHk~k~~----~~y--~~qL~~ci~qFv~KDp-~La~~vi~~LLk~WP~tns 376 (537)
.| .-..+...+..+++...+...- ..+ ...-..|+..+....+ .....++..+...--..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCCh
Confidence 00 0011112223344444332110 011 1122233333332222 3344555554433322333
Q ss_pred hhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcChhHHHhhhhc--cccccccccHHHHH
Q 009349 377 QKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHN--RQVIIPLVFPALER 454 (537)
Q Consensus 377 ~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~~~~~li~~n--~~~I~PiI~paL~~ 454 (537)
...-.-+.-+..+.+.+.++.+...+..+...+..++.++|..|-++|+..+. .+...+... ....++.++|.|.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG--RIADSVAESIDPQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 33333455677777777778888888889999999999999999988876443 233333221 13345666676666
Q ss_pred hhhhhccHHHHHHHHHHHHHHHH
Q 009349 455 NTQNHWNQAVLNLTQNVRKILCE 477 (537)
Q Consensus 455 ~sk~HWn~~Vr~la~~vlkiL~e 477 (537)
..... ..|+..+..++..+.+
T Consensus 462 ~l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 462 GLQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHTSC--HHHHHHHHHHHHHHHH
T ss_pred HhccC--hHHHHHHHHHHHHHHH
Confidence 65554 6788877777765554
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.58 E-value=2.6 Score=47.14 Aligned_cols=226 Identities=11% Similarity=0.052 Sum_probs=125.7
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhHhhhccCCccChHHH-HHHHHHHHhccCCCchHH
Q 009349 242 IVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAEL-LEIFGSIISGFALPLKEE 320 (537)
Q Consensus 242 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~I~nif~~FI~E~e~hnGIaEL-LeIlgSIInGfa~PLKeE 320 (537)
+.+++....|+|+..|......|..++.. .+. -.....++... +.....+--+ .-.|...|+..-.++.++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~-p~~----~~~l~~il~~~---~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQY-PDF----NNYLIFVLTKL---KSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTS-HHH----HHHHHHHHHTC---TTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhC-CCH----HHHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHccCCCCHH
Confidence 45566666788999999998888776531 111 11111111100 1111111000 112223333222356788
Q ss_pred HHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcC-----CCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCCh
Q 009349 321 HKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-----PKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM 395 (537)
Q Consensus 321 hk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KD-----p~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~ 395 (537)
.+..+...|+++...+. ..-..++..|+......| |.+...++..+ -..+..-.-.-+.-+..+++..++
T Consensus 87 ~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLL----DSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----SCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999877543 344667889998888766 33444433333 223333233345555566655443
Q ss_pred HHHH-----HHHHHHHHHHHHhhCCCcHHHHHHHHHhhcChhHHHhhhhccccccccccHHHHHhhhhhccHHHHHHHHH
Q 009349 396 AEFQ-----KIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQN 470 (537)
Q Consensus 396 ~~f~-----~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~~~~~li~~n~~~I~PiI~paL~~~sk~HWn~~Vr~la~~ 470 (537)
. +. .....++..+.+++++++..|-..|+....+ ++....+.-...++-+++.+.+.... =+..||..+..
T Consensus 162 ~-~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~d-~~~~vr~~a~~ 237 (852)
T 4fdd_A 162 I-LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAGD-EEPEVRKNVCR 237 (852)
T ss_dssp H-HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHTC-CCHHHHHHHHH
T ss_pred H-hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 2 22 1245567777788899999998888765542 11111111112234455666554432 36789999999
Q ss_pred HHHHHHHhCHHHHH
Q 009349 471 VRKILCEMDEELVQ 484 (537)
Q Consensus 471 vlkiL~e~Dp~lF~ 484 (537)
++..+.+..|+.+.
T Consensus 238 ~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 238 ALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHCHHHHG
T ss_pred HHHHHHHhCHHHHH
Confidence 99999988876543
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.21 E-value=2.4 Score=39.86 Aligned_cols=177 Identities=11% Similarity=0.042 Sum_probs=113.2
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhh---hccchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchHHH
Q 009349 245 LLDLFDSEDPRERDCLKTVLHRIYGK---FMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEH 321 (537)
Q Consensus 245 Ll~lfdSeDpRERd~LktiLhrIY~K---f~~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKeEh 321 (537)
+.+.++|.|.+||...-.-|..+-.. +.. ..+. .+.+.+...+......+-....+..+|.+..+....+.. |
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~-~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 56677899999998877777766433 221 1111 223334343421223333456788888888776544433 3
Q ss_pred HHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChH-HHHH
Q 009349 322 KIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMA-EFQK 400 (537)
Q Consensus 322 k~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~-~f~~ 400 (537)
..-+...|+...+.+.-. -.+....++..+++.-+ ...++..++...--.|+.=...-+.-|..++....|+ .+..
T Consensus 96 ~~~ilp~ll~~l~d~~~~-vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPN-VVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHHHHHHGGGCCCHH-HHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 333456666666655432 23556677777766433 3566777777776667766677888899888887665 3566
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHhh
Q 009349 401 IMVPLFRRIGCCLNSSHYQVAERAHLLW 428 (537)
Q Consensus 401 i~~~LF~~ia~cl~S~hfqVAErAL~~w 428 (537)
.+..+...+..|++..+..|=+.|....
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 7788889999999999998888887554
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.92 E-value=15 Score=40.45 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCc--HHHHHHHHHhhcChhHHHhhhhccccccccccHHHHHhhhhh
Q 009349 382 FISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSH--YQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNH 459 (537)
Q Consensus 382 FL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~h--fqVAErAL~~w~N~~~~~li~~n~~~I~PiI~paL~~~sk~H 459 (537)
.+.-+..+...++.++|......++..+..++++.+ ..|-+.|+..+.+ +.......-...++.++|.+......+
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 455566666667657888888889999999988874 2566777766532 222222222223344555555554433
Q ss_pred ccHHHHHHHHHHHHHHH
Q 009349 460 WNQAVLNLTQNVRKILC 476 (537)
Q Consensus 460 Wn~~Vr~la~~vlkiL~ 476 (537)
=+..||..|..++..+.
T Consensus 662 ~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 25567777776665554
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.89 E-value=2.7 Score=46.26 Aligned_cols=92 Identities=8% Similarity=0.023 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcH-HHHHHHHHhhcChhHHHhhhhccccccccccHHHHHhhhhh
Q 009349 381 MFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHY-QVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNH 459 (537)
Q Consensus 381 lFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hf-qVAErAL~~w~N~~~~~li~~n~~~I~PiI~paL~~~sk~H 459 (537)
..+.-+..++..+++ ++......++..+...+++.+. .|-+.++..+. .+.......-...+|.++|.|.+..+ +
T Consensus 575 ~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~--~l~~~~~~~~~~~l~~i~~~l~~~l~-~ 650 (861)
T 2bpt_A 575 NILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS--ALAASLGKGFEKYLETFSPYLLKALN-Q 650 (861)
T ss_dssp HHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHhc-c
Confidence 455566666666654 4566677788888888887766 67777776663 23333332222334455555554432 2
Q ss_pred ccHHHHHHHHHHHHHHH
Q 009349 460 WNQAVLNLTQNVRKILC 476 (537)
Q Consensus 460 Wn~~Vr~la~~vlkiL~ 476 (537)
=+..+|..+..++..+.
T Consensus 651 ~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 651 VDSPVSITAVGFIADIS 667 (861)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 23346666666555443
No 11
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.29 E-value=4.6 Score=39.00 Aligned_cols=177 Identities=8% Similarity=0.070 Sum_probs=119.4
Q ss_pred HhhcCCCChHHHHHHHHHHHH-Hhh---hhc----cchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccC-CC
Q 009349 246 LDLFDSEDPRERDCLKTVLHR-IYG---KFM----AHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFA-LP 316 (537)
Q Consensus 246 l~lfdSeDpRERd~LktiLhr-IY~---Kf~----~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa-~P 316 (537)
.+.+.|.|.+||...-.-|.. +-. +.. .+-. +. +.+...+-...+..-....++.+|.+.+|+. -.
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~-~~----~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN-LL----GIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH-HH----HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHH-HH----HHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 344578999999877777766 652 222 1111 22 2233333122233335677999999999987 55
Q ss_pred chHHHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcC-C----CcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHh
Q 009349 317 LKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-P----KLATNAIKGLLKYWPVTNSQKELMFISELEEVLE 391 (537)
Q Consensus 317 LKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KD-p----~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe 391 (537)
+...|..-+.-.++..++-+.-.. .....+++..+++.- | .-.+.++..|+..+-..|++=....+.-|..+++
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V-~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSV-IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHH-HHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 541344444666777777665322 456788888888743 2 1134677777777766677777788999999998
Q ss_pred hCCh--HHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhh
Q 009349 392 MTSM--AEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLW 428 (537)
Q Consensus 392 ~~~~--~~f~~i~-~~LF~~ia~cl~S~hfqVAErAL~~w 428 (537)
..+. ..|.+.+ ..+...+.+|+....-.|=+.|...+
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7764 8888888 89999999999999999988888665
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=89.23 E-value=13 Score=37.30 Aligned_cols=234 Identities=10% Similarity=0.050 Sum_probs=118.8
Q ss_pred HHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhccchHHHH-HHHHHHHhHhhhccCCccChHHHHHHHHHH
Q 009349 231 KVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIR-QAVCNIIYRFVFETERHNGIAELLEIFGSI 309 (537)
Q Consensus 231 k~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIR-k~I~nif~~FI~E~e~hnGIaELLeIlgSI 309 (537)
...+..++...+..|+.++.++|+.-|...-..|..+-......|..+. ..+-..+.+++.......-....+..|+.+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3334455556888999999999999999999999888665444444432 234455666664322222334556777777
Q ss_pred HhccCCCchHHHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcC---------CCcHHHHHHHhhccCCCCCChhHH
Q 009349 310 ISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD---------PKLATNAIKGLLKYWPVTNSQKEL 380 (537)
Q Consensus 310 InGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KD---------p~La~~vi~~LLk~WP~tns~KEv 380 (537)
..+-....+.....-....|+.+.+...-.. ......++..+...+ ....+.++..|- ..+..-..
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~ 252 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDV-LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM----HNDYKVVS 252 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT----CSCHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC----CCchhHHH
Confidence 7553111111111122344555554432111 111222333222222 234444444332 12222222
Q ss_pred HHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhcC-----hhHHHhhhhccccccccccHHHHH
Q 009349 381 MFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPALER 454 (537)
Q Consensus 381 lFL~EleeILe~~~~~~f~~i~-~~LF~~ia~cl~S~hfqVAErAL~~w~N-----~~~~~li~~n~~~I~PiI~paL~~ 454 (537)
.-+.-|..+... .++..+.+. ..+...|...+++++..|-+.|+....| +.....+.+ ..++|.++..|.
T Consensus 253 ~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~- 328 (450)
T 2jdq_A 253 PALRAVGNIVTG-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID--ANIFPALISILQ- 328 (450)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHH-
T ss_pred HHHHHHHHHhhC-ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHh-
Confidence 233333333322 122222222 2467778888899999998888866543 111111111 234555555442
Q ss_pred hhhhhccHHHHHHHHHHHHHHHH
Q 009349 455 NTQNHWNQAVLNLTQNVRKILCE 477 (537)
Q Consensus 455 ~sk~HWn~~Vr~la~~vlkiL~e 477 (537)
+=+..||..|..++.-+..
T Consensus 329 ----~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 329 ----TAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp ----HSCHHHHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHHHc
Confidence 2356788777777766654
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=87.38 E-value=40 Score=37.48 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=93.8
Q ss_pred HHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcChhHHHhhhhcc
Q 009349 362 NAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNR 441 (537)
Q Consensus 362 ~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~~~~~li~~n~ 441 (537)
.++..++..|.-.++.=.-....-+.++...++ ++|.+.+..+...+.+.++...+.|...|.... -.+...+...-
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~al--g~i~~~~~~~~ 705 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAI--GEISIQMGIEM 705 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHH--HHHHHHHGGGG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHH--HHHHHHhhHhH
Confidence 346666676755444444456677888877765 578888888999999999888888866655433 33434443333
Q ss_pred ccccccccHHHHHhhhh-hccHHHHHHHHHHHHHHHHhCHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 009349 442 QVIIPLVFPALERNTQN-HWNQAVLNLTQNVRKILCEMDEELV----QACKRKLEEENSTLSVAAERRKLTWERLESAAS 516 (537)
Q Consensus 442 ~~I~PiI~paL~~~sk~-HWn~~Vr~la~~vlkiL~e~Dp~lF----~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~ 516 (537)
...++.+++.|.+..++ .-+.+++..+..++--|....|... .++...+-..-.. .....+++..-+.+-....
T Consensus 706 ~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~-~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 706 QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN-IRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHT-SCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHH
Confidence 44445566666655432 5678899888888888888887754 3333333222111 1112234455555555555
Q ss_pred cCC
Q 009349 517 FQP 519 (537)
Q Consensus 517 ~~~ 519 (537)
.++
T Consensus 785 ~~p 787 (852)
T 4fdd_A 785 VNP 787 (852)
T ss_dssp HCG
T ss_pred hCh
Confidence 555
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=85.61 E-value=16 Score=42.60 Aligned_cols=248 Identities=13% Similarity=0.106 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccccCCCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHHHH
Q 009349 144 QDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFV 223 (537)
Q Consensus 144 Ke~K~~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NIFR~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv 223 (537)
++++++++.+|.+.+......+++.....++..+-. .+. ++.|..-+.....+..++
T Consensus 20 ~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~----~L~-------------------d~~~~vR~~A~~~L~~l~ 76 (1230)
T 1u6g_C 20 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILK----LLE-------------------DKNGEVQNLAVKCLGPLV 76 (1230)
T ss_dssp HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH----HTT-------------------CSSHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHH----Hhc-------------------CCCHHHHHHHHHHHHHHH
Confidence 577899999999998776555665555555544322 221 234555566666666666
Q ss_pred hcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhccc------hHHHHHHHHHHHhHhhhccCCcc
Q 009349 224 SYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAH------RQFIRQAVCNIIYRFVFETERHN 297 (537)
Q Consensus 224 ~s~~~d~k~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~------R~fIRk~I~nif~~FI~E~e~hn 297 (537)
.. ..+ .++ ...+..|+..+.+++++-|...-..|..|....... .......+-..+.+.+.+.+...
T Consensus 77 ~~--~~~----~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~ 149 (1230)
T 1u6g_C 77 SK--VKE----YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149 (1230)
T ss_dssp TT--SCH----HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHH
T ss_pred Hh--CCH----HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchH
Confidence 42 121 111 245667888888899988988777777765543322 11122333344444443223334
Q ss_pred ChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcCC-----CcHHHHHHHhhcc-C
Q 009349 298 GIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP-----KLATNAIKGLLKY-W 371 (537)
Q Consensus 298 GIaELLeIlgSIInGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp-----~La~~vi~~LLk~-W 371 (537)
-....+++++.+...+.-.+.+.. .-+...|+++...+.. .....-..|+..++..-+ .+...++.+|..- |
T Consensus 150 ~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~ 227 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS 227 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc
Confidence 456788899988864433333322 3345666777665432 234455667777765432 3456666666543 2
Q ss_pred CCCCChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhh
Q 009349 372 PVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLW 428 (537)
Q Consensus 372 P~tns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w 428 (537)
+.. -.+ .+.-+..+.+..+. .|...+..++..+-.++..++-.|-+.|+..|
T Consensus 228 ~~~-r~~---a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l 279 (1230)
T 1u6g_C 228 MST-TRT---YIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279 (1230)
T ss_dssp SCS-CTT---HHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHH
T ss_pred hhH-HHH---HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 111 111 24444555554433 45555556666777777776665555555544
No 15
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=83.32 E-value=22 Score=40.03 Aligned_cols=203 Identities=11% Similarity=0.121 Sum_probs=100.0
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHH---hhhhccchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 009349 243 VRLLDLFDSEDPRERDCLKTVLHRI---YGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 319 (537)
Q Consensus 243 ~~Ll~lfdSeDpRERd~LktiLhrI---Y~Kf~~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKe 319 (537)
.++++.+. .|+..++.+..+++++ |+.- ..+++-..+..++-.|- . .+++.+|.+++.++..|... +
T Consensus 689 ~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~--~~~~l~~~~~~l~~~~~--~---~~~~~~l~l~~~li~~f~~~--~ 758 (963)
T 2x19_B 689 QKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD--FAPMVPQLCEMLGRMYS--T---IPQASALDLTRQLVHIFAHE--P 758 (963)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST--TGGGHHHHHHHHHHHHH--H---SCCHHHHHHHHHHHHHHTTC--T
T ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHhhccc--ccccHHHHHHHHHHHHH--c---CCccHHHHHHHHHHHHhCCC--c
Confidence 34444433 5667777777777775 3321 12333333333222221 1 24678999999999865442 0
Q ss_pred HHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChHHH-
Q 009349 320 EHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEF- 398 (537)
Q Consensus 320 Ehk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~~f- 398 (537)
.... .+..+.+.+..|+...+.+|+.-.. .=..-|+..+..++..++..-+
T Consensus 759 ~~~~-------------~~~~~l~~~~~~~l~~~~~~~~~~p---------------d~~~~~f~ll~~~~~~~~~~~~~ 810 (963)
T 2x19_B 759 AHFP-------------PIEALFLLVTSVTLTLFQQGPRDHP---------------DIVDSFMQLLAQALKRKPDLFLC 810 (963)
T ss_dssp TTCH-------------HHHHHHHHHHHHHHHHHHHCTTTCH---------------HHHHHHHHHHHHHHHHCGGGGGC
T ss_pred chHH-------------HHHHHHHHHHHHHHHHHhhCcccCc---------------hHHHHHHHHHHHHHHhCcHHHcC
Confidence 0000 1111233444555544444332111 1112344455555544432221
Q ss_pred HHH-HHHHHHHHHHhhCCCcHHHHHHHHHhhcC--------hhHHHhhhhccccccccccHHHH-HhhhhhccHHHHHHH
Q 009349 399 QKI-MVPLFRRIGCCLNSSHYQVAERAHLLWNN--------EHILNLVTHNRQVIIPLVFPALE-RNTQNHWNQAVLNLT 468 (537)
Q Consensus 399 ~~i-~~~LF~~ia~cl~S~hfqVAErAL~~w~N--------~~~~~li~~n~~~I~PiI~paL~-~~sk~HWn~~Vr~la 468 (537)
... ...++..+..++..+|..|+..|+.+|.+ +.+..++..+-..++..++..+. ...+..|+ ..
T Consensus 811 ~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-----~~ 885 (963)
T 2x19_B 811 ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMD-----CF 885 (963)
T ss_dssp TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHH-----HH
T ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHH-----HH
Confidence 122 45688888889999999999999998853 33333333333333333333332 12244453 22
Q ss_pred HHHHHHHHHhCHHHHHHHHH
Q 009349 469 QNVRKILCEMDEELVQACKR 488 (537)
Q Consensus 469 ~~vlkiL~e~Dp~lF~~c~~ 488 (537)
..++..|...++..+.+.+.
T Consensus 886 ~~il~~l~~~~~~~~~~~l~ 905 (963)
T 2x19_B 886 ADILFALNKHCFSLLSMWIK 905 (963)
T ss_dssp HHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHH
Confidence 33344455556665555443
No 16
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=82.56 E-value=2.2 Score=38.27 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHhhccCCCC--CChhHHHHHHHHHHHHhhCC-------hHHHHHHHHHHHHHHHHhhCCCc
Q 009349 347 YCVVQFIDKDPKLATNAIKGLLKYWPVT--NSQKELMFISELEEVLEMTS-------MAEFQKIMVPLFRRIGCCLNSSH 417 (537)
Q Consensus 347 ~ci~qFv~KDp~La~~vi~~LLk~WP~t--ns~KEvlFL~EleeILe~~~-------~~~f~~i~~~LF~~ia~cl~S~h 417 (537)
.-..+++-.+.+-+..++..+.++-=.. ++.|.+-+|..+.+|+...- -..|.++++++|..+....++.+
T Consensus 23 q~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~ 102 (142)
T 2km4_A 23 SSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDL 102 (142)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3445666666777777777777776665 66999999999999996432 24788899999999998888889
Q ss_pred HHHHHHHHHhhcChh
Q 009349 418 YQVAERAHLLWNNEH 432 (537)
Q Consensus 418 fqVAErAL~~w~N~~ 432 (537)
-+..+|-+.+|....
T Consensus 103 ~~kv~rvl~iWeer~ 117 (142)
T 2km4_A 103 KKKLSRVVNILKERN 117 (142)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 999999999997644
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=81.46 E-value=37 Score=35.24 Aligned_cols=235 Identities=12% Similarity=0.061 Sum_probs=116.4
Q ss_pred hHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhccchHHHHH-HHHHHHhHhhhccCCccChHHHHHHHHH
Q 009349 230 VKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQ-AVCNIIYRFVFETERHNGIAELLEIFGS 308 (537)
Q Consensus 230 ~k~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk-~I~nif~~FI~E~e~hnGIaELLeIlgS 308 (537)
+...+..++...+..|+.++.++|+.-|...-..|..|-+.-...|..+.. .+-..+...+.......-.......|+.
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 344444555567888999999999999999999998886544444554433 2233455555333333334555667777
Q ss_pred HHhccCCCchHHHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcCC---------CcHHHHHHHhhccCCCCCChhH
Q 009349 309 IISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP---------KLATNAIKGLLKYWPVTNSQKE 379 (537)
Q Consensus 309 IInGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp---------~La~~vi~~LLk~WP~tns~KE 379 (537)
+..+...+ ......-....|+.|.....-.. ...-..++......++ .....++..|- ..+..=.
T Consensus 230 L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v-~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~----~~~~~v~ 303 (528)
T 4b8j_A 230 FCRGKPQP-SFEQTRPALPALARLIHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL----HPSPSVL 303 (528)
T ss_dssp HHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT----CSCHHHH
T ss_pred HHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc----CCChhHH
Confidence 77665222 22222234566666665543211 1122223332222222 23333333332 1222111
Q ss_pred HHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCC-cHHHHHHHHHhhcC-----hhHHHhhhhccccccccccHHH
Q 009349 380 LMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSS-HYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPAL 452 (537)
Q Consensus 380 vlFL~EleeILe~~~~~~f~~i~-~~LF~~ia~cl~S~-hfqVAErAL~~w~N-----~~~~~li~~n~~~I~PiI~paL 452 (537)
..-+.-|..+.. -.+...+.+. ..+...|..++.++ +..|.+.|+....| +.....+.+ ..+ +|.|
T Consensus 304 ~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~~----i~~L 376 (528)
T 4b8j_A 304 IPALRTVGNIVT-GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--AGI----IGPL 376 (528)
T ss_dssp HHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTC----HHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH--CCC----HHHH
Confidence 222333333322 1233322222 23456666777787 88888888765543 111111111 123 3444
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHh
Q 009349 453 ERNTQNHWNQAVLNLTQNVRKILCEM 478 (537)
Q Consensus 453 ~~~sk~HWn~~Vr~la~~vlkiL~e~ 478 (537)
.+..... +..++..|..++.-+..-
T Consensus 377 ~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 377 VNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 4433322 667777777776666544
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=78.75 E-value=22 Score=37.12 Aligned_cols=231 Identities=10% Similarity=0.034 Sum_probs=117.5
Q ss_pred HhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhccchHHHH-HHHHHHHhHhhhccCCccChHHHHHHHHHHH
Q 009349 232 VAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIR-QAVCNIIYRFVFETERHNGIAELLEIFGSII 310 (537)
Q Consensus 232 ~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIR-k~I~nif~~FI~E~e~hnGIaELLeIlgSII 310 (537)
..+..++...+..|+.++.++|+.-|...-..|..|-+.-...|..+. ..+-..+.+.+.. ....-....+..|+.+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHh
Confidence 333344445677888889999999999999999888655444444432 2334455565543 22222344566777777
Q ss_pred hccCCCchHHHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcCC---------CcHHHHHHHhhccCCCCCChhHHH
Q 009349 311 SGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP---------KLATNAIKGLLKYWPVTNSQKELM 381 (537)
Q Consensus 311 nGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp---------~La~~vi~~LLk~WP~tns~KEvl 381 (537)
.+-..........-....|+.|.....-. -......++......++ .+...++..| ++ .+..-...
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~---~~~~v~~~ 318 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SH---ESTLVQTP 318 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GC---SCHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHH-HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CC---CChhhHHH
Confidence 65422222223333456677776654321 11223344444443333 3333333333 21 22211122
Q ss_pred HHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhcCh------hHHHhhhhccccccccccHHHHH
Q 009349 382 FISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWNNE------HILNLVTHNRQVIIPLVFPALER 454 (537)
Q Consensus 382 FL~EleeILe~~~~~~f~~i~-~~LF~~ia~cl~S~hfqVAErAL~~w~N~------~~~~li~~n~~~I~PiI~paL~~ 454 (537)
-+.-|..+... .++..+.+. ..+...|..++.+++..|-+.|+..+.|- .+..++ ...++|.++..|
T Consensus 319 a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~---~~~~l~~L~~lL-- 392 (530)
T 1wa5_B 319 ALRAVGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI---DANLIPPLVKLL-- 392 (530)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTCHHHHHHHH--
T ss_pred HHHHHHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH---HCCCHHHHHHHH--
Confidence 23333333221 233222222 24667788888999999988888665441 111111 123445544444
Q ss_pred hhhhhccHHHHHHHHHHHHHHHH
Q 009349 455 NTQNHWNQAVLNLTQNVRKILCE 477 (537)
Q Consensus 455 ~sk~HWn~~Vr~la~~vlkiL~e 477 (537)
.+-+..|+..|..++.-+..
T Consensus 393 ---~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 393 ---EVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp ---HHSCHHHHHHHHHHHHHHHH
T ss_pred ---hcCCHHHHHHHHHHHHHHHh
Confidence 22356677777666665543
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=78.49 E-value=31 Score=40.17 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcChhHHHhhhh-------cccccccccc
Q 009349 377 QKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTH-------NRQVIIPLVF 449 (537)
Q Consensus 377 ~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~~~~~li~~-------n~~~I~PiI~ 449 (537)
.-..--+..+..+++...++.|.....++...+..+++..+..|+..|+..+. .+.+.+.. .-...++.++
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~--~l~~~~~~~~~~~~~~~~~~~~~ll 569 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQ--QLVKVIRPLDQPSSFDATPYIKDLF 569 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHHCCSSSCCCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHH--HHHHHhcCcccccccchHHHHHHHH
Confidence 34455677788888888888888888888888889999999999888876663 33333322 1112234455
Q ss_pred HHHHHhhh-hhccHHHHHHHHHHHHHHHHh
Q 009349 450 PALERNTQ-NHWNQAVLNLTQNVRKILCEM 478 (537)
Q Consensus 450 paL~~~sk-~HWn~~Vr~la~~vlkiL~e~ 478 (537)
|.+..... ...+..+|..|..++..+.+.
T Consensus 570 ~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 570 TCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 55544432 467889999999888888754
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=78.39 E-value=56 Score=32.45 Aligned_cols=208 Identities=10% Similarity=0.070 Sum_probs=100.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhhcc-chHHHH-HHHHHHHhHhhhccCCccChHHHHHHHHHHHhcc------
Q 009349 242 IVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-HRQFIR-QAVCNIIYRFVFETERHNGIAELLEIFGSIISGF------ 313 (537)
Q Consensus 242 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~fIR-k~I~nif~~FI~E~e~hnGIaELLeIlgSIInGf------ 313 (537)
+..|.+.+.++|+.-|..+-.+|..+..++.. .++++. ..+. .+...+.+ ....-....+++++.+...-
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~ 296 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA-ITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIE 296 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH-HHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677889999998888888888665433 233333 2222 22222211 11111244566666665321
Q ss_pred -----------CCCchHHHHHHHHHHHhcc----cCCCC------cccchhhHHHHHHHHHhcCC-CcHHHHHHHhhccC
Q 009349 314 -----------ALPLKEEHKIFLCRALIPL----HKPKS------VGIYHQQLTYCVVQFIDKDP-KLATNAIKGLLKYW 371 (537)
Q Consensus 314 -----------a~PLKeEhk~Fl~rvLlPL----Hk~k~------~~~y~~qL~~ci~qFv~KDp-~La~~vi~~LLk~W 371 (537)
..+....-+.+ ...++|. ..... -......-..|+..+...-+ .....++..+...-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l 375 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHT
T ss_pred cccccccCCCccchhHHHHHHH-hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 01111111111 1223332 22110 00111122334444443333 23334444443332
Q ss_pred CCCCChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcChhHHHhhhhc--ccccccccc
Q 009349 372 PVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHN--RQVIIPLVF 449 (537)
Q Consensus 372 P~tns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~~~~~li~~n--~~~I~PiI~ 449 (537)
--.+......-+.-+..+.+.+.++.+...+..++..+..+++++|..|-.+|+.... .+...+... ....++.++
T Consensus 376 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~--~~~~~~~~~~~~~~~l~~ll 453 (462)
T 1ibr_B 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLPEAAINDVYLAPLL 453 (462)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHGGGGCCSTTTHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHhcccccccHHHHHHHH
Confidence 2233333344555666666666555555556678888999999999999888876664 344444332 123345556
Q ss_pred HHHHH
Q 009349 450 PALER 454 (537)
Q Consensus 450 paL~~ 454 (537)
|.|.+
T Consensus 454 ~~Ll~ 458 (462)
T 1ibr_B 454 QCLIE 458 (462)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 66543
No 21
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=76.18 E-value=3.7 Score=35.99 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCC------hHHHHHHHHHHHHHHHHhhCCCc
Q 009349 344 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTS------MAEFQKIMVPLFRRIGCCLNSSH 417 (537)
Q Consensus 344 qL~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~------~~~f~~i~~~LF~~ia~cl~S~h 417 (537)
+-..-+++++-.+.+-+..++..+.++--.+.+.+.+-+|..+.+|+.... -..|.+.+.++|..+.......+
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~ 100 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGC 100 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444555677777778888888888888778888899999999999996441 24578888999999998888888
Q ss_pred HHHHHHHHHhhcC
Q 009349 418 YQVAERAHLLWNN 430 (537)
Q Consensus 418 fqVAErAL~~w~N 430 (537)
-+-..+-+.+|..
T Consensus 101 k~kl~kll~iW~~ 113 (135)
T 4fu3_A 101 KKPLERLLNIWQE 113 (135)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 8889999999975
No 22
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=75.34 E-value=30 Score=34.27 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcChhHHHhhhhcc-ccc---cccccHHHHHhhh
Q 009349 382 FISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNR-QVI---IPLVFPALERNTQ 457 (537)
Q Consensus 382 FL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~~~~~li~~n~-~~I---~PiI~paL~~~sk 457 (537)
=++.|.+.++. .+++......-+|+-++--+.+.|++|+.++|.+.. .++..+.+.. +.. ...++|.|..-.
T Consensus 66 ale~L~~~l~~-~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~--~l~~~l~~~~y~~~~~ea~~~lP~LveKl- 141 (266)
T 2of3_A 66 ALDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK--VIVELIRDTETPMSQEEVSAFVPYLLLKT- 141 (266)
T ss_dssp HHHHHHHHHHH-CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHHHHHHHTTCCCCHHHHHHHHHHHHHGG-
T ss_pred HHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHHh-
Confidence 34444444444 345555566667887776666889999999999884 4444443321 111 245667766544
Q ss_pred hhccHHHHHHHHHHHHHHHHhC-HH-HHHHHHHHH
Q 009349 458 NHWNQAVLNLTQNVRKILCEMD-EE-LVQACKRKL 490 (537)
Q Consensus 458 ~HWn~~Vr~la~~vlkiL~e~D-p~-lF~~c~~~~ 490 (537)
.|=++.||+.+..+++.+.++- |. +|+.+.+.+
T Consensus 142 Gd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ 176 (266)
T 2of3_A 142 GEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL 176 (266)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG
T ss_pred CCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 6778999999999999999853 44 677766544
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=74.53 E-value=31 Score=37.11 Aligned_cols=175 Identities=10% Similarity=0.149 Sum_probs=107.2
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 009349 240 LFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 319 (537)
Q Consensus 240 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKe 319 (537)
..+..|.+.+.+.|..-|..+-.-++++-.+|...- ..+-+.+.+++... .-.-..|.+..++.|+.++.- +++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~----~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~-~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA----ERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN-KYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH----HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-hHH
Confidence 356778888888999988888888887777764322 22335556655432 222356677788888877632 222
Q ss_pred HHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChHHHH
Q 009349 320 EHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQ 399 (537)
Q Consensus 320 Ehk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~~f~ 399 (537)
.-...+... ...-..+.-.....+++.+|...-+. ...+++.+++.+...++.-+...|.-+..+....+.. .+
T Consensus 427 ~~v~~L~~~----l~~~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~ 500 (591)
T 2vgl_B 427 SIIATLCEN----LDSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQ 500 (591)
T ss_dssp TTHHHHHHT----TTTCCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-TH
T ss_pred HHHHHHHHH----HHhccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HH
Confidence 222222222 22111112234566777777554443 6799999999888777666667788888877665432 22
Q ss_pred HHHHHHHHHHHHhh-CCCcHHHHHHHHHhhc
Q 009349 400 KIMVPLFRRIGCCL-NSSHYQVAERAHLLWN 429 (537)
Q Consensus 400 ~i~~~LF~~ia~cl-~S~hfqVAErAL~~w~ 429 (537)
..+..+ +..|. +|.+..|=+||..+|.
T Consensus 501 ~~i~~l---l~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 501 ELVQQV---LSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHH---HHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHH---HHHhhhcCCChHHHHHHHHHHH
Confidence 333333 34443 5799999999998774
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=70.99 E-value=53 Score=29.59 Aligned_cols=190 Identities=15% Similarity=0.111 Sum_probs=96.1
Q ss_pred hHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhccchHHH-HHHHHHHHhHhhhccCCccChHHHHHHHHH
Q 009349 230 VKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFI-RQAVCNIIYRFVFETERHNGIAELLEIFGS 308 (537)
Q Consensus 230 ~k~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fI-Rk~I~nif~~FI~E~e~hnGIaELLeIlgS 308 (537)
+...+..++...+..|+.++.++|+.-|...-..|..+-..-...|..+ ....-..+.+++... ...-....+..|+.
T Consensus 34 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~ 112 (252)
T 4hxt_A 34 ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALAN 112 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 3445555666789999999999999999999999988865534444433 333445566666432 22223344555555
Q ss_pred HHhccCCCchHHHHHH-----HHHHHhcccCCCCcccchhhHHHHHHHHHhcCCCcH--------HHHHHHhhccCCCCC
Q 009349 309 IISGFALPLKEEHKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLA--------TNAIKGLLKYWPVTN 375 (537)
Q Consensus 309 IInGfa~PLKeEhk~F-----l~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp~La--------~~vi~~LLk~WP~tn 375 (537)
+..+. ++.+.. ....|+.+.+...- .....-..++......++... -..+-.+++ ..+
T Consensus 113 l~~~~-----~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~ 183 (252)
T 4hxt_A 113 IASGP-----DEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STD 183 (252)
T ss_dssp HTTSC-----HHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSC
T ss_pred HHcCC-----HHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC---CCC
Confidence 55322 222222 24556666665442 123334444444443333221 122222222 222
Q ss_pred ChhHHHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhcC
Q 009349 376 SQKELMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWNN 430 (537)
Q Consensus 376 s~KEvlFL~EleeILe~~~~~~f~~i~-~~LF~~ia~cl~S~hfqVAErAL~~w~N 430 (537)
..-...-+.-|..+.. -+++.-+.+. ..+...+...+.+.+..|.+.|+....|
T Consensus 184 ~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 184 SEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 2111112222332222 1222222221 2356677777788888888888766544
No 25
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=70.99 E-value=30 Score=30.86 Aligned_cols=181 Identities=13% Similarity=0.066 Sum_probs=85.7
Q ss_pred CCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCC
Q 009349 237 VDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHR-QFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFAL 315 (537)
Q Consensus 237 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R-~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~ 315 (537)
....+...|+.++.|+|+..|...-..|..+-..-...+ .++....-..+.+++... ...-....+..|+.+..+.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~-- 85 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG-- 85 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC--
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC--
Confidence 344455678888899999999888888877753333333 233333344555655432 2222334455666655332
Q ss_pred CchHHHHHH-----HHHHHhcccCCCCcccchhhHHHHHHHHHhcCC---------CcHHHHHHHhhccCCCCCChhHHH
Q 009349 316 PLKEEHKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP---------KLATNAIKGLLKYWPVTNSQKELM 381 (537)
Q Consensus 316 PLKeEhk~F-----l~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp---------~La~~vi~~LLk~WP~tns~KEvl 381 (537)
++.+.. ....|+.+.+...... ...-..++......++ ...+.+++.+- ..+..=+..
T Consensus 86 ---~~~~~~i~~~g~i~~L~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~ 157 (210)
T 4db6_A 86 ---NEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQE 157 (210)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHTTCSCHHH-HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHH
T ss_pred ---cHHHHHHHHCCCHHHHHHHHcCCcHHH-HHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHH
Confidence 222222 1356666666553211 1222333333333322 22333333332 122211111
Q ss_pred HHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhc
Q 009349 382 FISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWN 429 (537)
Q Consensus 382 FL~EleeILe~~~~~~f~~i~-~~LF~~ia~cl~S~hfqVAErAL~~w~ 429 (537)
-+.-|..+... +++.-..+. ......|...+.+.+..|.+.|+..+.
T Consensus 158 a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 158 ALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp HHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22223333321 122222221 245667778888888888888887654
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=67.79 E-value=1e+02 Score=31.92 Aligned_cols=224 Identities=11% Similarity=0.021 Sum_probs=101.6
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 009349 242 IVRLLDLFDSEDPRERDCLKTVLHRIYGKF--MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 319 (537)
Q Consensus 242 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKe 319 (537)
+..|+..+.|+|+..|...-..|.++..+. ...+..+...+-..+.+++.......-..+.+..|+.|..+. +
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-----~ 163 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-----S 163 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 556777777888777777777776665432 122333444444555555533212222344555666665442 1
Q ss_pred HHHHHH-----HHHHhcccCCCCcccchhhHHHHHHHHHhcCC---------CcHHHHHHHhhccCCCCCChhHHHHHHH
Q 009349 320 EHKIFL-----CRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP---------KLATNAIKGLLKYWPVTNSQKELMFISE 385 (537)
Q Consensus 320 Ehk~Fl-----~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp---------~La~~vi~~LLk~WP~tns~KEvlFL~E 385 (537)
++...+ ...|+.|.+.... ....+-..++..+...++ .....+++.+-. .+..=...-+.-
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~-~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~ 238 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSV-EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWT 238 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHH
Confidence 222221 2333333332211 112223333333333222 333333333322 221111112333
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcC-----hhHHHhhhhccccccccccHHHHHhhhhhc
Q 009349 386 LEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPALERNTQNHW 460 (537)
Q Consensus 386 leeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N-----~~~~~li~~n~~~I~PiI~paL~~~sk~HW 460 (537)
|..+...-.+..-......+...|...+.+.+..|...|+..+.| +.....+.+ ..++|. |..... |=
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~v~~----Lv~lL~-~~ 311 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID--VRIPKR----LVELLS-HE 311 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH--TTCHHH----HHHGGG-CS
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh--cCcHHH----HHHHHC-CC
Confidence 333432211110011234455666677788888887777755432 111111111 123344 444332 44
Q ss_pred cHHHHHHHHHHHHHHHHhCHHH
Q 009349 461 NQAVLNLTQNVRKILCEMDEEL 482 (537)
Q Consensus 461 n~~Vr~la~~vlkiL~e~Dp~l 482 (537)
+..|+..|..++.-+..-++..
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~~ 333 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDLQ 333 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH
T ss_pred ChhhHHHHHHHHHHHHcCCHHH
Confidence 6788888888888877655543
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=63.41 E-value=33 Score=32.87 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=56.4
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcChhHHHhhhhccc------ccc-ccccHHHHHhhh
Q 009349 385 ELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQ------VII-PLVFPALERNTQ 457 (537)
Q Consensus 385 EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~~~~~li~~n~~------~I~-PiI~paL~~~sk 457 (537)
-+..+++.++|.........+...|..++++.+.+|=+.|+.+... ++..... ..+ |.++|.|.+..
T Consensus 127 al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~-----~~~~~~~~~~~l~~~l~~~iip~l~~~l- 200 (249)
T 2qk1_A 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA-----SMKEEKDGYSTLQRYLKDEVVPIVIQIV- 200 (249)
T ss_dssp HHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH-----HHHHCCSCSHHHHHHHTTTHHHHHHHHH-
T ss_pred HHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----HHHHcCCcchhHHHHHHHHHHHHHHHHh-
Confidence 3555666665422111134567777788999999999999987643 2322221 135 66777776655
Q ss_pred hhccHHHHHHHHHHHHHHHH
Q 009349 458 NHWNQAVLNLTQNVRKILCE 477 (537)
Q Consensus 458 ~HWn~~Vr~la~~vlkiL~e 477 (537)
++=+..||..|..++..++.
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 44478899999999988763
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=62.50 E-value=1.2e+02 Score=31.38 Aligned_cols=226 Identities=15% Similarity=0.061 Sum_probs=113.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 009349 242 IVRLLDLFDSEDPRERDCLKTVLHRIYGKF--MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 319 (537)
Q Consensus 242 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKe 319 (537)
+..|+..+.|+|+..|..--..|.++-... ...+.++...+-..+.+++.......--.+.+..|+.|..|- +
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-----~ 150 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-----S 150 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 556777788888888888777777774432 233444555555666676643321222345566777776543 2
Q ss_pred HHHHH-----HHHHHhcccCCCCcccchhhHHHHHHHHHhcCCCcHHHH-----HHHhhccC-CCCCChhHHHHHHHHHH
Q 009349 320 EHKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNA-----IKGLLKYW-PVTNSQKELMFISELEE 388 (537)
Q Consensus 320 Ehk~F-----l~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp~La~~v-----i~~LLk~W-P~tns~KEvlFL~Elee 388 (537)
+++.. ....|+.|.+.... ....+-..++......++.....+ +..|++.- ...+..=...-+.-|..
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSD-DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33332 24556666666432 223334445544444434322211 22233222 11121111122233333
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcC-----hhHHHhhhhccccccccccHHHHHhhhhhccHH
Q 009349 389 VLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPALERNTQNHWNQA 463 (537)
Q Consensus 389 ILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N-----~~~~~li~~n~~~I~PiI~paL~~~sk~HWn~~ 463 (537)
+...-+...+ .....+...|...+.+.+..|.+.|+..+.| +.....+. -.-++|.|.+.. .|=+..
T Consensus 230 L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~------~~g~v~~Lv~lL-~~~~~~ 301 (528)
T 4b8j_A 230 FCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVI------EAGVCPRLVELL-LHPSPS 301 (528)
T ss_dssp HHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHH------HTTCHHHHHHHT-TCSCHH
T ss_pred HHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH------HcCHHHHHHHHH-cCCChh
Confidence 3332211111 2335667777788899998998887765533 11111111 112344444433 233678
Q ss_pred HHHHHHHHHHHHHHhCHH
Q 009349 464 VLNLTQNVRKILCEMDEE 481 (537)
Q Consensus 464 Vr~la~~vlkiL~e~Dp~ 481 (537)
|+..|..++.-+..-++.
T Consensus 302 v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp HHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHcCCHH
Confidence 888888888777654443
No 29
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=61.05 E-value=15 Score=32.98 Aligned_cols=90 Identities=10% Similarity=0.160 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHHHHHhhCCCcH
Q 009349 342 HQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM---AEFQKIMVPLFRRIGCCLNSSHY 418 (537)
Q Consensus 342 ~~qL~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~---~~f~~i~~~LF~~ia~cl~S~hf 418 (537)
.++...-++.++..+...+..++..+.+|--++.+.+.+.+|.-+..|+..+.+ ..|.+.+.++|...-.+++...-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 455666678888888888999888888888889999999999999999987653 56777788899888887766666
Q ss_pred HHHHHHHHhhcCh
Q 009349 419 QVAERAHLLWNNE 431 (537)
Q Consensus 419 qVAErAL~~w~N~ 431 (537)
+-..|-+.+|...
T Consensus 103 ~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 103 TKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCc
Confidence 6677788999754
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=58.27 E-value=1.3e+02 Score=32.42 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHhhc
Q 009349 404 PLFRRIGCCLNSSHYQVAERAHLLWN 429 (537)
Q Consensus 404 ~LF~~ia~cl~S~hfqVAErAL~~w~ 429 (537)
.+-..+..|.+|.+..|=+||..+|.
T Consensus 548 ~l~~~L~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 548 RIKKVVSIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34445677788888899999988875
No 31
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=56.70 E-value=1e+02 Score=31.62 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=102.0
Q ss_pred CccChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCC
Q 009349 295 RHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVT 374 (537)
Q Consensus 295 ~hnGIaELLeIlgSIInGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp~La~~vi~~LLk~WP~t 374 (537)
.+.|-.|..+++..+++-|+.+-.+.-+.- +-.+.-+-+. .++ .-.++..+.||-.-..+.++|+-
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLv-YLyl~~~~~~------~~e-~iLv~Nsl~kDl~~~N~~iR~lA------ 124 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMC-YLTIKEMSCI------AED-VIIVTSSLTKDMTGKEDSYRGPA------ 124 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHH-HHHHHHHTTT------SSC-GGGGHHHHHHHHHSSCHHHHHHH------
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHhCCC------HHH-HHHHHHHHHhhcCCCcHhHHHHH------
Confidence 567888899999999999999866544432 2222222222 222 22666666666665566777764
Q ss_pred CChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcChhHHHhhhhccccccccccHHHHH
Q 009349 375 NSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALER 454 (537)
Q Consensus 375 ns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N~~~~~li~~n~~~I~PiI~paL~~ 454 (537)
|.-+..|. .++ +..++..-+-+|+.+.|.-|.-.|+.-. ..++..+.+.+ .-.++.+.+
T Consensus 125 --------LRtL~~I~---~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~~-----~kL~~~~pe~v-~~~~~~l~~ 183 (355)
T 3tjz_B 125 --------VRALCQIT---DST----MLQAIERYMKQAIVDKVPSVSSSALVSS-----LHLLKCSFDVV-KRWVNEAQE 183 (355)
T ss_dssp --------HHHHHHHC---CTT----THHHHHHHHHHHHTCSSHHHHHHHHHHH-----HHHTTTCHHHH-HTTHHHHHH
T ss_pred --------HHHHhcCC---CHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHH-----HHHhccCHHHH-HHHHHHHHH
Confidence 44444442 233 3457788899999999999999988653 34454444433 334555543
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 009349 455 NTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLE 491 (537)
Q Consensus 455 ~sk~HWn~~Vr~la~~vlkiL~e~Dp~lF~~c~~~~~ 491 (537)
.. .-=|..|.-.|..++.-+.+.|+..+.+....+.
T Consensus 184 ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~ 219 (355)
T 3tjz_B 184 AA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT 219 (355)
T ss_dssp HT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHh
Confidence 33 3346777777888888888888877777766554
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=56.41 E-value=1.1e+02 Score=27.37 Aligned_cols=220 Identities=13% Similarity=0.061 Sum_probs=111.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhhccchHH-HHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchHH
Q 009349 242 IVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQF-IRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEE 320 (537)
Q Consensus 242 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~f-IRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKeE 320 (537)
|..|+.++.++|+..|...-..|..+-......|.. +...+-..+.+++.... ..-....+..|+.+..+- ++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~-----~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGP-----DE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCC-----hH
Confidence 567899999999988988888888776554433333 33344556666664322 112233455555554321 22
Q ss_pred HHHH-----HHHHHhcccCCCCcccchhhHHHHHHHHHhcCCC---------cHHHHHHHhhccCCCCCChhHHHHHHHH
Q 009349 321 HKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPK---------LATNAIKGLLKYWPVTNSQKELMFISEL 386 (537)
Q Consensus 321 hk~F-----l~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp~---------La~~vi~~LLk~WP~tns~KEvlFL~El 386 (537)
.+.. ....|+.+.+...- .....-..++......++. ..+.+++.+ + ..+..=...-+.-|
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~---~~~~~~~~~a~~~L 152 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-T---STDSEVQKEAARAL 152 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-T---CSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-c---CCCHHHHHHHHHHH
Confidence 2222 24556666665432 1122333344444333333 233333222 2 22221111122222
Q ss_pred HHHHhhCChHHHHHH-HHHHHHHHHHhhCCCcHHHHHHHHHhhcC-----hhHHHhhhhccccccccccHHHHHhhhhhc
Q 009349 387 EEVLEMTSMAEFQKI-MVPLFRRIGCCLNSSHYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPALERNTQNHW 460 (537)
Q Consensus 387 eeILe~~~~~~f~~i-~~~LF~~ia~cl~S~hfqVAErAL~~w~N-----~~~~~li~~n~~~I~PiI~paL~~~sk~HW 460 (537)
..+... +++..+.+ .......+...+.+++..|.+.|+....| +.....+.+ .-+++.|.+..+ +=
T Consensus 153 ~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~i~~L~~ll~-~~ 224 (252)
T 4hxt_A 153 ANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD------AGGVEVLQKLLT-ST 224 (252)
T ss_dssp HHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH------TTHHHHHHHGGG-CS
T ss_pred HHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHC-CC
Confidence 222211 22221221 13466778888889999998888865533 222222211 123445544443 44
Q ss_pred cHHHHHHHHHHHHHHHHhCH
Q 009349 461 NQAVLNLTQNVRKILCEMDE 480 (537)
Q Consensus 461 n~~Vr~la~~vlkiL~e~Dp 480 (537)
+..++..|..++.-|...++
T Consensus 225 ~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 225 DSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp CHHHHHHHHHHHHHHHHTCB
T ss_pred cHHHHHHHHHHHHHHHcCCC
Confidence 77899999988888876543
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=55.44 E-value=2.2e+02 Score=30.58 Aligned_cols=140 Identities=10% Similarity=0.075 Sum_probs=74.9
Q ss_pred HHHhcccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCC---CC--hhHHHHHHHHHHHHhh---------
Q 009349 327 RALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVT---NS--QKELMFISELEEVLEM--------- 392 (537)
Q Consensus 327 rvLlPLHk~k~~~~y~~qL~~ci~qFv~KDp~La~~vi~~LLk~WP~t---ns--~KEvlFL~EleeILe~--------- 392 (537)
.+|+-+.+... ....++...++.+.+.++|.+-..++..|..+.... .+ ..-+..|+|..+.+..
T Consensus 425 ~~ll~lL~~~~-~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~ 503 (618)
T 1w63_A 425 DTIMRVLTTAG-SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPI 503 (618)
T ss_dssp HHHHHHHHHTG-GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred HHHHHHHHhcc-chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccccc
Confidence 34444444433 234456778889999999999888888877776531 11 2234466777666642
Q ss_pred -CChHHHHHHHHHHHHHHHHh-hCCCcHH-HHHHHH-HhhcChhHHHhhhhccccccccccHHHHHhhhhhccHHHHHHH
Q 009349 393 -TSMAEFQKIMVPLFRRIGCC-LNSSHYQ-VAERAH-LLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLT 468 (537)
Q Consensus 393 -~~~~~f~~i~~~LF~~ia~c-l~S~hfq-VAErAL-~~w~N~~~~~li~~n~~~I~PiI~paL~~~sk~HWn~~Vr~la 468 (537)
+.|.....+ +..+.+. ..+++.| .+..|+ .++.. .. ..-+.+...|.+ ...+-|..||+.|
T Consensus 504 ~~~~~~~~~~----l~~~l~~~~~~~~vr~~~lta~~Kl~~~---------~~-~~~~~l~~~L~~-~~~~~d~evrdRA 568 (618)
T 1w63_A 504 QVTEDEVLDI----LESVLISNMSTSVTRGYALTAIMKLSTR---------FT-CTVNRIKKVVSI-YGSSIDVELQQRA 568 (618)
T ss_dssp CCCHHHHHHH----HHHHHHSTTCCHHHHHHHHHHHHHHHTT---------CS-SCHHHHHHHHHH-HTTCSCHHHHHHH
T ss_pred CCCHHHHHHH----HHHHHhccCCCHHHHHHHHHHHHHHHHh---------Cc-chHHHHHHHHHH-hcCCCCHHHHHHH
Confidence 233333222 2222221 1222222 111122 33332 21 122333333433 3577899999999
Q ss_pred HHHHHHHHHhCHHHH
Q 009349 469 QNVRKILCEMDEELV 483 (537)
Q Consensus 469 ~~vlkiL~e~Dp~lF 483 (537)
...+++|.. ++.+-
T Consensus 569 ~~y~~ll~~-~~~~~ 582 (618)
T 1w63_A 569 VEYNALFKK-YDHMR 582 (618)
T ss_dssp HHHHHHHHT-TTTHH
T ss_pred HHHHHHHcC-cHHHH
Confidence 999999875 55443
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=50.74 E-value=1.4e+02 Score=26.96 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=27.6
Q ss_pred hhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh
Q 009349 234 KKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYG 269 (537)
Q Consensus 234 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~ 269 (537)
+..++...|..|+.++.++|+.-|...-.+|..+-.
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 344555677889999999998888888888876654
No 35
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=49.95 E-value=31 Score=29.88 Aligned_cols=87 Identities=10% Similarity=0.190 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhC---ChHHHHHHHHHHHHHHHHhh-CCCcHH
Q 009349 344 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMT---SMAEFQKIMVPLFRRIGCCL-NSSHYQ 419 (537)
Q Consensus 344 qL~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~---~~~~f~~i~~~LF~~ia~cl-~S~hfq 419 (537)
+=..-+.+++-.+.+-+..++..+.++--.+.+.+.+-+|..+.+|+... ....|.+...+.+..+-..+ +..+-+
T Consensus 22 ~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~ 101 (132)
T 4flb_A 22 ESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSK 101 (132)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33444567777777888888888888888888999999999999999765 23345444433333333333 456677
Q ss_pred HHHHHHHhhcC
Q 009349 420 VAERAHLLWNN 430 (537)
Q Consensus 420 VAErAL~~w~N 430 (537)
-..+-+.+|..
T Consensus 102 kl~~ll~iW~~ 112 (132)
T 4flb_A 102 SVERIFKIWED 112 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 78889999975
No 36
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=49.26 E-value=1.6e+02 Score=32.06 Aligned_cols=83 Identities=12% Similarity=0.187 Sum_probs=56.3
Q ss_pred hhhHH----HHHHHHHh---cCCCc-HHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhh
Q 009349 342 HQQLT----YCVVQFID---KDPKL-ATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCL 413 (537)
Q Consensus 342 ~~qL~----~ci~qFv~---KDp~L-a~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl 413 (537)
+..+. +++..|.+ ..+.. ...+++.+.+.++..++.-+...|.-+..+.-.. |+ .+. .+-..+..|.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~-~~~---~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE-VKA---TIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG-GHH---HHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH-HHH---HHHHHHHHHh
Confidence 44566 88888844 34433 3477889988888888777777777777775543 32 222 2333444555
Q ss_pred C--CCcHHHHHHHHHhhc
Q 009349 414 N--SSHYQVAERAHLLWN 429 (537)
Q Consensus 414 ~--S~hfqVAErAL~~w~ 429 (537)
. |.+..|=+||..+|.
T Consensus 568 ~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLR 585 (621)
T ss_dssp HHSCSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 5 999999999999884
No 37
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=48.88 E-value=2.3e+02 Score=30.12 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhccCCCC
Q 009349 345 LTYCVVQFIDKDPKLATNAIKGLLKYWPVT 374 (537)
Q Consensus 345 L~~ci~qFv~KDp~La~~vi~~LLk~WP~t 374 (537)
+.+.+...-+.||..-..+++.+-+|.|..
T Consensus 204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 204 INKLLTALNECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence 334444444556666667777777777653
No 38
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=47.09 E-value=2.5e+02 Score=28.68 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHh
Q 009349 242 IVRLLDLFDSEDPRERDCLKTVLHRIY 268 (537)
Q Consensus 242 i~~Ll~lfdSeDpRERd~LktiLhrIY 268 (537)
|..|+..+.|+|+..|...-..|..+.
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~ 38 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIA 38 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHH
Confidence 667888888999999887766665554
No 39
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=46.17 E-value=57 Score=37.85 Aligned_cols=213 Identities=9% Similarity=0.082 Sum_probs=102.5
Q ss_pred HHHHH-hhcCC-CChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhHhhhccCCccC--hHHHHHHHHHHHhccCCCc
Q 009349 242 IVRLL-DLFDS-EDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNG--IAELLEIFGSIISGFALPL 317 (537)
Q Consensus 242 i~~Ll-~lfdS-eDpRERd~LktiLhrIY~Kf~~~R~fIRk~I~nif~~FI~E~e~hnG--IaELLeIlgSIInGfa~PL 317 (537)
|.+.+ ..++. .|+.+|......|..+=..- . .. .+....+..+..++- -.=.+.+|...|+ .+
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp-~---aw-----~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l 74 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSS-T---GW-----KICHEIFSEKTKYKPSTRLICLQTLSEKVR----EW 74 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST-T---HH-----HHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh-h---HH-----HHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hC
Confidence 44444 23443 38888888888887653321 1 00 111111111110000 0012334445555 34
Q ss_pred hHH----HHHHHHHHHhcccCCC----CcccchhhHHHHHHHHHhcC-CCcHHHHHHHhhccCCCCCC-hhHHHHHHHHH
Q 009349 318 KEE----HKIFLCRALIPLHKPK----SVGIYHQQLTYCVVQFIDKD-PKLATNAIKGLLKYWPVTNS-QKELMFISELE 387 (537)
Q Consensus 318 KeE----hk~Fl~rvLlPLHk~k----~~~~y~~qL~~ci~qFv~KD-p~La~~vi~~LLk~WP~tns-~KEvlFL~Ele 387 (537)
.++ .+..+...|+.+...- .-...-.+|..+++.++..+ |.-=...+..|+..|-..+. .--..||.-+.
T Consensus 75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~ 154 (980)
T 3ibv_A 75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLL 154 (980)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 456 6777777777776531 11223466777777776543 22222233333333322232 22334565555
Q ss_pred HHHhhC-------Ch---------------HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHh---hcChhHHHhhhhccc
Q 009349 388 EVLEMT-------SM---------------AEFQKIMVPLFRRIGCCLNSSHYQVAERAHLL---WNNEHILNLVTHNRQ 442 (537)
Q Consensus 388 eILe~~-------~~---------------~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~---w~N~~~~~li~~n~~ 442 (537)
.|-|-+ +. ..+..+....+..+..|..+.+-.+++.+|.. |-+---.+++.. .
T Consensus 155 ~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~--~ 232 (980)
T 3ibv_A 155 SIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN--E 232 (980)
T ss_dssp HHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC--H
T ss_pred HhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc--c
Confidence 222211 11 11444466777888888877787877776643 433222233322 3
Q ss_pred cccccccHHHHHhhhhhccHHHHHHHHHHHHHHH
Q 009349 443 VIIPLVFPALERNTQNHWNQAVLNLTQNVRKILC 476 (537)
Q Consensus 443 ~I~PiI~paL~~~sk~HWn~~Vr~la~~vlkiL~ 476 (537)
.+++.+|..| . +..++..|..++..+.
T Consensus 233 ~ll~~l~~~L----~---~~~~r~~A~ecL~ei~ 259 (980)
T 3ibv_A 233 PCMNLLYSFL----Q---IEELRCAACETMTEIV 259 (980)
T ss_dssp HHHHHHHHHT----T---SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHc----C---ChHHHHHHHHHHHHHH
Confidence 3445554433 2 2677888888776654
No 40
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=44.98 E-value=2.4e+02 Score=27.80 Aligned_cols=223 Identities=11% Similarity=0.079 Sum_probs=114.1
Q ss_pred CCH-HHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhcc
Q 009349 237 VDH-LFIVRLLDLFDSE-DPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGF 313 (537)
Q Consensus 237 id~-~Fi~~Ll~lfdSe-DpRERd~LktiLhrIY~Kf~~-~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGf 313 (537)
+.. ..+..|++++.++ |+.-|...-.+|..+...-.. .+.++...+-..+.+.+... ...--...+..|+.+..+.
T Consensus 60 ~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp HTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCC
Confidence 444 6788899999998 889998888888888653222 22333334445565655432 2222234566777766432
Q ss_pred CCCchHHHHHH-----HHHHHhcccCCCCcccchhhHHHHHHHHHhcC-CC--------cHHHHHHHhhccCCCCCChhH
Q 009349 314 ALPLKEEHKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-PK--------LATNAIKGLLKYWPVTNSQKE 379 (537)
Q Consensus 314 a~PLKeEhk~F-----l~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KD-p~--------La~~vi~~LLk~WP~tns~KE 379 (537)
++.+.. ....|+.+.+...-......-..++..++..+ |. +.+.+++. ++ ..+ .+
T Consensus 139 -----~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~-l~---~~~--~~ 207 (450)
T 2jdq_A 139 -----TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL-LF---VSD--TD 207 (450)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHH-TT---CCC--HH
T ss_pred -----HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH-Hc---cCC--HH
Confidence 122221 13455666654222233445556666666443 32 23333322 22 122 12
Q ss_pred HHHHHHHHHHHhhC---ChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhcC-----hhHHHhhhhccccccccccH
Q 009349 380 LMFISELEEVLEMT---SMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFP 450 (537)
Q Consensus 380 vlFL~EleeILe~~---~~~~f~~i~-~~LF~~ia~cl~S~hfqVAErAL~~w~N-----~~~~~li~~n~~~I~PiI~p 450 (537)
+ .......|..+ .++....+. ..++..|..++.+++..|.+.|+....| +.....+.+ .-++|
T Consensus 208 v--~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~ 279 (450)
T 2jdq_A 208 V--LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN------CSALQ 279 (450)
T ss_dssp H--HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT------TTHHH
T ss_pred H--HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH------CccHH
Confidence 1 12222222221 222222221 2466777778888888888888755432 111111111 12344
Q ss_pred HHHHhhhhhccHHHHHHHHHHHHHHHHhCH
Q 009349 451 ALERNTQNHWNQAVLNLTQNVRKILCEMDE 480 (537)
Q Consensus 451 aL~~~sk~HWn~~Vr~la~~vlkiL~e~Dp 480 (537)
.|.+... +-+..+|..|..++.-+..-++
T Consensus 280 ~L~~ll~-~~~~~vr~~a~~~L~~l~~~~~ 308 (450)
T 2jdq_A 280 SLLHLLS-SPKESIKKEACWTISNITAGNR 308 (450)
T ss_dssp HHHHHTT-CSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHcCCH
Confidence 4444433 3477888888888877765443
No 41
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=42.84 E-value=1.7e+02 Score=33.55 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=102.0
Q ss_pred CCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCC
Q 009349 237 VDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALP 316 (537)
Q Consensus 237 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~P 316 (537)
.|-.-+.+++..+-++|..+|......|..+...- +.=... ..++.+=-...-++.| +.+|...|+..-..
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p-~~~~~l----~~iL~~s~~~~vr~~a----a~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP-DAWQKA----DQILQFSTNPQSKFIA----LSILDKLITRKWKL 83 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST-TGGGGH----HHHHHHCSCHHHHHHH----HHHHHHHHHHTGGG
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc-hHHHHH----HHHHhhCCCHHHHHHH----HHHHHHHHHhhCcc
Confidence 45555677777777788878877777776664321 100000 1111000000001111 11223333322134
Q ss_pred chHHHHHHHHHHHhcccCCCC--------cccchhhHHHHHHHHHhc-----CCCcHHHHHHHhhccCCCCCC-hhH--H
Q 009349 317 LKEEHKIFLCRALIPLHKPKS--------VGIYHQQLTYCVVQFIDK-----DPKLATNAIKGLLKYWPVTNS-QKE--L 380 (537)
Q Consensus 317 LKeEhk~Fl~rvLlPLHk~k~--------~~~y~~qL~~ci~qFv~K-----Dp~La~~vi~~LLk~WP~tns-~KE--v 380 (537)
+.++.+..+...|+.+..... -.....++..|+...... -|.+...++..+ - ++. .++ .
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~-~~~~~~~~~l 158 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S-SSVNVCENNM 158 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c-cChHHHHHHH
Confidence 567788888888887765422 122345677777766543 344444444433 1 222 233 2
Q ss_pred HHHHHHHHHHhhCCh------------HHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHhhc---ChhHHHhhhhccccc
Q 009349 381 MFISELEEVLEMTSM------------AEFQKIMVPLFRRIGCCLNS-SHYQVAERAHLLWN---NEHILNLVTHNRQVI 444 (537)
Q Consensus 381 lFL~EleeILe~~~~------------~~f~~i~~~LF~~ia~cl~S-~hfqVAErAL~~w~---N~~~~~li~~n~~~I 444 (537)
.+|.-+-+.+..... +.+..-...+|..+..++.+ .+..|...||.... +-.-.+.+.. ..+
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~--~~l 236 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE--TNI 236 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS--SSH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh--hhH
Confidence 233333322221111 33455566777777777754 45566666664331 1000111111 223
Q ss_pred cccccHHHHHhhhhhccHHHHHHHHHHHHHHHHh
Q 009349 445 IPLVFPALERNTQNHWNQAVLNLTQNVRKILCEM 478 (537)
Q Consensus 445 ~PiI~paL~~~sk~HWn~~Vr~la~~vlkiL~e~ 478 (537)
++.++..+. . +..++..|..++.-+...
T Consensus 237 l~~l~~~~l----~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 237 LELLSTKFM----T--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHTHHH----H--SHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC----C--CHhHHHHHHHHHHHHHhC
Confidence 344332221 1 566777777766666544
No 42
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=41.33 E-value=1.9e+02 Score=32.64 Aligned_cols=50 Identities=6% Similarity=0.010 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhCChHHH-HHH-HHHHHHHHHHhhCCCcHHHHHHHHHhhcC
Q 009349 381 MFISELEEVLEMTSMAEF-QKI-MVPLFRRIGCCLNSSHYQVAERAHLLWNN 430 (537)
Q Consensus 381 lFL~EleeILe~~~~~~f-~~i-~~~LF~~ia~cl~S~hfqVAErAL~~w~N 430 (537)
-|++.+..++...+..-+ ... ...++.....|+..+|.-++..|+.+|.+
T Consensus 804 ~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~ 855 (971)
T 2x1g_F 804 TFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTH 855 (971)
T ss_dssp HHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344455555544322222 133 56788888888888888888889999965
No 43
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=38.97 E-value=34 Score=30.84 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCCCCChhHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhc------ChhHHHhhhhccccc
Q 009349 371 WPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWN------NEHILNLVTHNRQVI 444 (537)
Q Consensus 371 WP~tns~KEvlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~------N~~~~~li~~n~~~I 444 (537)
||.+. ..++||..+.-.-..+.+..++.-|++++.. .|+| |.-.||.+.. ++.|+..+.+|...|
T Consensus 25 ~~~pg-----ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~--k~~~--vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~I 95 (140)
T 1vdy_A 25 KVAPV-----YKLEEICDLLRSSHVSIVKEFSEFILKRLDN--KSPI--VKQKALRLIKYAVGKSGSEFRREMQRNSVAV 95 (140)
T ss_dssp SCCCH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS--SSHH--HHHHHHHHHHHHTTTSCHHHHHHHHHTTHHH
T ss_pred CCCcH-----HHHHHHHHHHHhcchhHHHHHHHHHHHHhcC--CCcc--eeehHHHHHHHHHHhCCHHHHHHHHHhHHHH
Confidence 56554 3466777766444445678899999998886 3444 6677776553 566666666665433
Q ss_pred cccc-cHHHHHh-hhhhccHHHHHHHHHHHHHHHHhC
Q 009349 445 IPLV-FPALERN-TQNHWNQAVLNLTQNVRKILCEMD 479 (537)
Q Consensus 445 ~PiI-~paL~~~-sk~HWn~~Vr~la~~vlkiL~e~D 479 (537)
=-.. |-....- --.-.++.||..|..++.+|.+-+
T Consensus 96 k~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 96 RNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp HTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcC
Confidence 1110 0000010 012367899999999999986543
No 44
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=37.93 E-value=4.2e+02 Score=28.64 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=42.6
Q ss_pred cHHHHHHHhhccCCCCCCh-----hHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHhhCC
Q 009349 359 LATNAIKGLLKYWPVTNSQ-----KELMFISELEEVLEMTS-MAEFQKIMVPLFRRIGCCLNS 415 (537)
Q Consensus 359 La~~vi~~LLk~WP~tns~-----KEvlFL~EleeILe~~~-~~~f~~i~~~LF~~ia~cl~S 415 (537)
+...+.+.++-.|-..... .++-+|.-+.|+...+. .++-..++..||..|-..+=-
T Consensus 261 Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~ 323 (507)
T 3u0r_A 261 FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPL 323 (507)
T ss_dssp HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCC
Confidence 4555666677777776665 78899999999999887 566677788888888766543
No 45
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=37.69 E-value=79 Score=28.40 Aligned_cols=88 Identities=17% Similarity=0.324 Sum_probs=53.8
Q ss_pred HHHHHhhC-ChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhc------ChhHHHhhhhccccccccc-cHHHHHhhh
Q 009349 386 LEEVLEMT-SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWN------NEHILNLVTHNRQVIIPLV-FPALERNTQ 457 (537)
Q Consensus 386 leeILe~~-~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~------N~~~~~li~~n~~~I~PiI-~paL~~~sk 457 (537)
|++|...+ +.++|..||.-|.+||.. ...+..+.-.||.+.. ++.++.-+.++...|..+= |.-+... -
T Consensus 26 m~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~~~i~~L~~F~y~d~~-g 102 (144)
T 1eyh_A 26 MSEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRD-G 102 (144)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTT-S
T ss_pred HHHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHHHHHHHHhhHHHhhhccceeeCCC-c
Confidence 45566554 678899999999998863 2257888888887662 2344333333332221110 0000011 2
Q ss_pred hhccHHHHHHHHHHHHHHH
Q 009349 458 NHWNQAVLNLTQNVRKILC 476 (537)
Q Consensus 458 ~HWn~~Vr~la~~vlkiL~ 476 (537)
.-|...||..|..++.+|.
T Consensus 103 ~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 103 KDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp CBCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHC
Confidence 3488899999999999996
No 46
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=37.13 E-value=4.3e+02 Score=31.01 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=25.3
Q ss_pred CCHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 009349 237 VDHLFIVRLLDLFDSEDPRERDCLKTVLHRIY 268 (537)
Q Consensus 237 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY 268 (537)
+|-.-+.+++..+.++|+.+|......|..+-
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q 56 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLK 56 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 56667788888888889998888888886543
No 47
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=33.77 E-value=2.1e+02 Score=25.87 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=56.6
Q ss_pred HHHHHhhC-ChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhc------ChhHHHhhhhccccccccccHHHH--Hhh
Q 009349 386 LEEVLEMT-SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWN------NEHILNLVTHNRQVIIPLVFPALE--RNT 456 (537)
Q Consensus 386 leeILe~~-~~~~f~~i~~~LF~~ia~cl~S~hfqVAErAL~~w~------N~~~~~li~~n~~~I~PiI~paL~--~~s 456 (537)
+.+|...+ +..+|..||.-|.+|+...- ..+....-.||.+.. .+.++.-+.++...|=. + .... ...
T Consensus 32 m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~~-L-~~F~~~d~~ 108 (150)
T 3onk_A 32 MDQISQGTYNFREREEILSMIFRRFTEKA-GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRI-L-ETFHYIDSQ 108 (150)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHHG-G-GGCCCBCTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh-h-hcccccCCC
Confidence 44555544 78999999999999988421 136788888886662 24444444444332211 1 1100 011
Q ss_pred hhhccHHHHHHHHHHHHHHHHhCHHH
Q 009349 457 QNHWNQAVLNLTQNVRKILCEMDEEL 482 (537)
Q Consensus 457 k~HWn~~Vr~la~~vlkiL~e~Dp~l 482 (537)
-..|-..||..|..++.+|. |++.
T Consensus 109 G~D~G~~VR~kak~l~~LL~--D~e~ 132 (150)
T 3onk_A 109 GRDQGINVRTRVKALIELLS--DDNK 132 (150)
T ss_dssp SCBCHHHHHHHHHHHHHHHT--CHHH
T ss_pred CCchHHHHHHHHHHHHHHHc--CHHH
Confidence 23588999999999999995 5543
No 48
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=30.92 E-value=4.6e+02 Score=29.93 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCChHHHH---HHHHHHHHHHHHhhCCCcHHHHHHHHHhhcC
Q 009349 381 MFISELEEVLEMTSMAEFQ---KIMVPLFRRIGCCLNSSHYQVAERAHLLWNN 430 (537)
Q Consensus 381 lFL~EleeILe~~~~~~f~---~i~~~LF~~ia~cl~S~hfqVAErAL~~w~N 430 (537)
-|+..+..++..+...-+. .....++.....|+..+|..+++.|+.+|.+
T Consensus 823 ~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~ 875 (1049)
T 3m1i_C 823 EFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALD 875 (1049)
T ss_dssp HHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 3455555555444332221 1135677888889999999999999999854
No 49
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=29.05 E-value=6.6e+02 Score=28.24 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=41.4
Q ss_pred CchHHHHHHHHHHHhcccCCCCcccchhhHHHHHHHHHhcC-----CCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHH
Q 009349 316 PLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-----PKLATNAIKGLLKYWPVTNSQKELMFISELEEVL 390 (537)
Q Consensus 316 PLKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~qFv~KD-----p~La~~vi~~LLk~WP~tns~KEvlFL~EleeIL 390 (537)
.+.++.+..++..|+....... ..-..++..||......| |.|.+.++..+- ..+.....-.|.-+.+|+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~----s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLS----NDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCC----SSCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhC----CCCHHHHHHHHHHHHHHH
Confidence 3567778888877777655433 344567888888776543 555555444331 233333444555555566
Q ss_pred hh
Q 009349 391 EM 392 (537)
Q Consensus 391 e~ 392 (537)
+.
T Consensus 152 ~~ 153 (960)
T 1wa5_C 152 KR 153 (960)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 50
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=28.76 E-value=43 Score=25.45 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=37.2
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhcccCCCCcccchhhHHHHHHH
Q 009349 304 EIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQ 351 (537)
Q Consensus 304 eIlgSIInGfa~PLKeEhk~Fl~rvLlPLHk~k~~~~y~~qL~~ci~q 351 (537)
+++.|+|+.-. |.++||.++...|=..-..+.+..|||-+...|..
T Consensus 5 sViRSvikSS~--l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKSSR--LEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHHSC--SCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 46678887653 68999999998888888889999999988777654
No 51
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=27.67 E-value=2.8e+02 Score=27.01 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhH--HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q 009349 345 LTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKE--LMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAE 422 (537)
Q Consensus 345 L~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KE--vlFL~EleeILe~~~~~~f~~i~~~LF~~ia~cl~S~hfqVAE 422 (537)
|.+.-..-+.+||.+.+.++++++-+= +++.-+ -...+.|+++... .+ .+...+..-|...++.....|..
T Consensus 36 L~qa~el~~~~dp~ll~~~l~~il~~~--~~~~~~vrk~~~~Fi~e~~~~-k~----~l~~~~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 36 LAKVQETVLGSCAELAEEFLESVLSLA--HDSNMEVRKQVVAFVEQVCKV-KV----ELLPHVINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHGGG--GCSCHHHHHHHHHHHHHHHHH-CG----GGHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHccCHhHHHHHHHHHHHhc--cCChHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHcCCCHHHHH
Confidence 333333346789999999999999862 333222 2334445555422 12 23344444455555666677777
Q ss_pred HHHHhhcChhHHHhhhhccccccccccHHHHHhh------hhhccHHH
Q 009349 423 RAHLLWNNEHILNLVTHNRQVIIPLVFPALERNT------QNHWNQAV 464 (537)
Q Consensus 423 rAL~~w~N~~~~~li~~n~~~I~PiI~paL~~~s------k~HWn~~V 464 (537)
+|+... ..+||.+|--+..+. ..-|+.-.
T Consensus 109 ~~I~~~-------------~~iY~~~l~~i~~~~~~~~~~~~~W~~m~ 143 (257)
T 3gs3_A 109 RVIQAC-------------GSIYKNGLQYLCSLMEPGDSAEQAWNILS 143 (257)
T ss_dssp HHHHHH-------------HHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHH-------------HHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 766554 345666666665553 35676543
No 52
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=27.64 E-value=90 Score=36.17 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhHhhhccCCccChHHHHHHHHHHHhccCCCchHHH
Q 009349 243 VRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEH 321 (537)
Q Consensus 243 ~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~fIRk~I~nif~~FI~E~e~hnGIaELLeIlgSIInGfa~PLKeEh 321 (537)
.+.++.+. .|.+=|+.....+||+...+.. ..|++-+.+..++- .-...++++.|.++|.+|.+| |.++
T Consensus 705 l~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~-----~~~~~e~~~fL~l~~qli~~f----~~~~ 774 (980)
T 3ibv_A 705 FLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN-----SIDMNELVDVLSFISQLIHIY----KDNM 774 (980)
T ss_dssp HHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH-----HCCTTTHHHHHHHHHHHHHHT----TTTS
T ss_pred HHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHH----HHHH
Confidence 34445444 5677777799999999775532 44556666555442 224677999999999999999 4456
Q ss_pred HHHHHHHHhcccC
Q 009349 322 KIFLCRALIPLHK 334 (537)
Q Consensus 322 k~Fl~rvLlPLHk 334 (537)
..++...|-||..
T Consensus 775 ~~~l~~ll~~l~~ 787 (980)
T 3ibv_A 775 MEITNRMLPTLLM 787 (980)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666544
No 53
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=27.53 E-value=5.3e+02 Score=26.64 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=43.4
Q ss_pred ChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHH-HHHHHhHhhh
Q 009349 229 DVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQA-VCNIIYRFVF 291 (537)
Q Consensus 229 d~k~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~-I~nif~~FI~ 291 (537)
++...+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.-...|..+... .-..+...+.
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 34444555666678889999999999999999999988866555556554432 2334445543
No 54
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=25.86 E-value=1e+02 Score=27.44 Aligned_cols=85 Identities=11% Similarity=0.188 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCCh----------HHHHHHHHHHHHHHHHhh
Q 009349 344 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM----------AEFQKIMVPLFRRIGCCL 413 (537)
Q Consensus 344 qL~~ci~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~----------~~f~~i~~~LF~~ia~cl 413 (537)
+-..-++..+..+.+.+..++..+.++--++.+.+.+.+|.-+.+|+..... ..|.+.+..+|..+..|-
T Consensus 24 ~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~ 103 (145)
T 3d9j_A 24 AKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCP 103 (145)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCC
Confidence 3444455666666666666666666666667778889999999999864322 356677777777666554
Q ss_pred CCCcHHHHHHHHHhhc
Q 009349 414 NSSHYQVAERAHLLWN 429 (537)
Q Consensus 414 ~S~hfqVAErAL~~w~ 429 (537)
..+-.-.+|-+.+|.
T Consensus 104 -~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 104 -GDDKSKIVRVLNLWQ 118 (145)
T ss_dssp -GGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhc
Confidence 677777888999997
No 55
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=25.83 E-value=7.3e+02 Score=27.69 Aligned_cols=213 Identities=7% Similarity=0.002 Sum_probs=102.7
Q ss_pred cchhHHHHHHHHHHHhcCCCCh--------------HHhhhcCCHHHHHHHHhhcCC--CChHHHHHHHHHHHHHhhhh-
Q 009349 209 WSHLQIVYDLLLRFVSYGSLDV--------------KVAKKYVDHLFIVRLLDLFDS--EDPRERDCLKTVLHRIYGKF- 271 (537)
Q Consensus 209 WpHLqlVYeillrfv~s~~~d~--------------k~ak~~id~~Fi~~Ll~lfdS--eDpRERd~LktiLhrIY~Kf- 271 (537)
+.++.-|.+.+++.+. +.... +....|++ .++..|+.++++ -|.+++..+-+.+-.|....
T Consensus 541 ~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 541 PAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp --CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 4678888887777662 33221 11223432 456667778887 46889999888888887643
Q ss_pred -ccchHHHHHHHHHHH---hHhhhccC----CccChHHHHHHHHHHHhccCCCc-------------hHHHHHHHHHHHh
Q 009349 272 -MAHRQFIRQAVCNII---YRFVFETE----RHNGIAELLEIFGSIISGFALPL-------------KEEHKIFLCRALI 330 (537)
Q Consensus 272 -~~~R~fIRk~I~nif---~~FI~E~e----~hnGIaELLeIlgSIInGfa~PL-------------KeEhk~Fl~rvLl 330 (537)
...-+++.+.+..++ .+.+.+.. .-.-+.+.++.++.++.+..... .+--.. +..++.
T Consensus 619 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-i~~~l~ 697 (971)
T 2x1g_F 619 PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQR-TMPIFK 697 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHT-THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHH-HHHHHH
Confidence 222333433322222 22222211 11235667788888877654321 111110 111111
Q ss_pred cccCC--CCcccchhhHHHHHHH---HHhcC-CCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChH-H----HH
Q 009349 331 PLHKP--KSVGIYHQQLTYCVVQ---FIDKD-PKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMA-E----FQ 399 (537)
Q Consensus 331 PLHk~--k~~~~y~~qL~~ci~q---Fv~KD-p~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~-~----f~ 399 (537)
-+... ... ........++.. .+.++ ..+.+.++.+|+...-.+ .+..||+-+..++.....+ + +.
T Consensus 698 ~~l~~~~~~~-~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~~~~~l~l~~~~i~~~~~~~~~~~~l~ 773 (971)
T 2x1g_F 698 RIAEMWVEEI-DVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR---CCAPTLEISKTAIVMFFKDEGCKPLMQ 773 (971)
T ss_dssp HHHHHTTTCH-HHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-----CCHHHHHHHHHHHTTCCC-----HHHH
T ss_pred HHHHhccccH-HHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCCcchHHHHH
Confidence 11111 111 111112222222 11222 235677788888766543 3478999999999877553 2 33
Q ss_pred HHHHHHHHHHHHhhCC-------CcHHHHHHHHHhh
Q 009349 400 KIMVPLFRRIGCCLNS-------SHYQVAERAHLLW 428 (537)
Q Consensus 400 ~i~~~LF~~ia~cl~S-------~hfqVAErAL~~w 428 (537)
.+..+++..+-..+++ .+-.|++..+.+.
T Consensus 774 ~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll 809 (971)
T 2x1g_F 774 QLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCL 809 (971)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHH
Confidence 3333444433333333 3556777766554
No 56
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=25.10 E-value=65 Score=24.12 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHhcCcccccccCCCcCchhHHHHHHHHH
Q 009349 112 VSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLI 152 (537)
Q Consensus 112 v~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~~~Ke~K~~tL~ 152 (537)
+|++....-|..|+..|..--|| |++||..+.
T Consensus 15 i~np~~r~~Fe~ki~~~~tE~q~---------k~iKr~IIR 46 (49)
T 3bbz_A 15 VANPQMKQAFEQRLAKASTEDAL---------NDIKRDIIR 46 (49)
T ss_dssp CCSHHHHHHHHHHHHTCCSHHHH---------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHH---------HHHHHHHHH
Confidence 56777788899999999998877 677877654
No 57
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=23.62 E-value=8.5e+02 Score=27.66 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhc----------------CCCChHHHHHHHHHHHHHhhhhccch
Q 009349 212 LQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLF----------------DSEDPRERDCLKTVLHRIYGKFMAHR 275 (537)
Q Consensus 212 LqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lf----------------dSeDpRERd~LktiLhrIY~Kf~~~R 275 (537)
.+.|-++-.+|=.+-..+.. +++| +.-|=+.| +++--|-++.+.++|.|.|..-..-|
T Consensus 18 ~~~~~~l~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~q~~~~s~ 91 (778)
T 3opb_A 18 SSTIDSLCAAFDKTLKSTPD-VQKY-----NDAINTIFQLRQKSESGKMPADLTNSEALKDRQKIEEILTRSYQDHSESR 91 (778)
T ss_dssp HHHHHHHHHHHHHTTTSCTT-HHHH-----HHHHHHHTTTTCSTGGGCCCTTTSSSTTHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHHHhcccCCCCC-hHHH-----HHHHHHHHhcccccccccccccccchhhcccHHHHHHHHHHHhhCcHHHH
Confidence 56777777777554322211 2334 33343444 34555668889999999998888888
Q ss_pred HHHHHHHHHHHhHhh
Q 009349 276 QFIRQAVCNIIYRFV 290 (537)
Q Consensus 276 ~fIRk~I~nif~~FI 290 (537)
.++.+.|.+-.-+|+
T Consensus 92 ~~l~~~~~~~~~~~l 106 (778)
T 3opb_A 92 VHLSKLIQNDIPFAL 106 (778)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhChHHHH
Confidence 888887776444443
No 58
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=22.62 E-value=8.5e+02 Score=27.31 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhh
Q 009349 239 HLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKF 271 (537)
Q Consensus 239 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 271 (537)
..++..|+.++.|.|+..+...-.+|+.|..++
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888888888887654
No 59
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=22.00 E-value=3.5e+02 Score=24.35 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=52.7
Q ss_pred HHHHHhcCCCcHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhCChHHHHH-----HHHHHHHHHHHhhCCCcHHHHHH
Q 009349 349 VVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQK-----IMVPLFRRIGCCLNSSHYQVAER 423 (537)
Q Consensus 349 i~qFv~KDp~La~~vi~~LLk~WP~tns~KEvlFL~EleeILe~~~~~~f~~-----i~~~LF~~ia~cl~S~hfqVAEr 423 (537)
|...+..++.-+..+++.|.|.=-..|+.-+..-|..++.++..+.+.--.. ++..+.+.+. ...|.+|-++
T Consensus 39 icD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~---~~~~~~Vk~k 115 (163)
T 1x5b_A 39 ICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK---NKAHPKVCEK 115 (163)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH---TTCCHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc---cCCCHHHHHH
Confidence 4456777888888888888766656788999999999999998887533222 2222222222 3478899999
Q ss_pred HHHhh
Q 009349 424 AHLLW 428 (537)
Q Consensus 424 AL~~w 428 (537)
++.+.
T Consensus 116 il~li 120 (163)
T 1x5b_A 116 LKSLM 120 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
Done!