BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009351
         (537 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
           Dehydrogenase 1-Like Protein
 pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
           Dehydrogenase 1-Like Protein
          Length = 349

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 219 SAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS-KLRMGLEIENHLKKSVRELEKKI- 276
           + +MW F +T   +    L D +     +V+ L   KL   +   ++L ++V++ +  + 
Sbjct: 37  TVKMWVFEETVNGR---KLTDIINNDHENVKYLPGHKLPENVVAMSNLSEAVQDADLLVF 93

Query: 277 IHSDKFISNAIAEL--RLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQN 334
           +   +FI     E+  R+    L + ++  ++EG   +K ISD+I EK      V+ G N
Sbjct: 94  VIPHQFIHRICDEITGRVPKKALGITLIKGIDEGPEGLKLISDIIREKMGIDISVLMGAN 153


>pdb|3IBP|A Chain A, The Crystal Structure Of The Dimerization Domain Of
           Escherichia Coli Structural Maintenance Of Chromosomes
           Protein Mukb
          Length = 302

 Score = 29.3 bits (64), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 26/40 (65%)

Query: 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191
           ++R+E L +E   L ++ ATL FD++K + L+++F   I 
Sbjct: 223 ESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIG 262


>pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
 pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
 pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
 pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
 pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
 pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
          Length = 680

 Score = 28.9 bits (63), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 406 RHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKV 465
           R ++ RN ++A ++ +    R +   T + V+      Q  +D QL   + C E+ +EK 
Sbjct: 396 RLIVNRNDDAAFERVVNTPTRGIGDRTLDVVR------QTSRDRQLTLWQACRELLQEKA 449

Query: 466 LAG 468
           LAG
Sbjct: 450 LAG 452


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,735,811
Number of Sequences: 62578
Number of extensions: 472476
Number of successful extensions: 1942
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1899
Number of HSP's gapped (non-prelim): 74
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)