Query 009351
Match_columns 537
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 03:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 90.3 2.5 8.5E-05 42.3 11.9 63 136-198 527-589 (597)
2 1c1g_A Tropomyosin; contractIl 90.2 7.8 0.00027 32.9 35.0 23 14-36 3-25 (284)
3 1i84_S Smooth muscle myosin he 88.2 1.9 6.4E-05 48.4 10.2 8 316-323 1153-1160(1184)
4 3s4r_A Vimentin; alpha-helix, 87.5 2.4 8.1E-05 35.4 8.1 64 12-87 18-81 (93)
5 3oja_B Anopheles plasmodium-re 83.5 28 0.00097 34.7 15.1 38 146-183 544-581 (597)
6 3o0z_A RHO-associated protein 83.1 5.8 0.0002 36.9 9.2 77 14-96 52-138 (168)
7 1c1g_A Tropomyosin; contractIl 83.1 20 0.00069 30.3 34.0 24 14-37 10-33 (284)
8 2fxo_A Myosin heavy chain, car 81.6 25 0.00085 30.3 15.4 108 56-191 14-121 (129)
9 3tnu_B Keratin, type II cytosk 78.7 29 0.001 29.7 11.6 77 146-262 36-118 (129)
10 3vkg_A Dynein heavy chain, cyt 77.9 1.6E+02 0.0055 37.5 23.0 24 46-69 1901-1924(3245)
11 1go4_E MAD1 (mitotic arrest de 77.3 7.7 0.00026 33.5 7.4 29 11-39 13-41 (100)
12 2dfs_A Myosin-5A; myosin-V, in 77.0 94 0.0032 35.2 17.9 30 58-87 924-953 (1080)
13 2efr_A General control protein 76.3 46 0.0016 30.4 20.8 121 60-197 26-146 (155)
14 2dfs_A Myosin-5A; myosin-V, in 74.9 75 0.0026 36.0 16.5 14 25-38 961-974 (1080)
15 3ol1_A Vimentin; structural ge 74.2 41 0.0014 28.8 12.6 53 60-112 18-70 (119)
16 2zqm_A Prefoldin beta subunit 74.0 14 0.00047 30.1 7.9 77 13-89 23-111 (117)
17 3tnu_A Keratin, type I cytoske 73.1 32 0.0011 29.6 10.3 77 146-262 38-120 (131)
18 3o0z_A RHO-associated protein 71.5 66 0.0022 30.0 18.5 125 134-295 29-153 (168)
19 1deq_A Fibrinogen (alpha chain 68.6 17 0.00059 37.7 8.8 35 261-295 107-141 (390)
20 1nkp_A C-MYC, MYC proto-oncoge 68.6 8.1 0.00028 31.7 5.3 54 188-253 20-73 (88)
21 3hnw_A Uncharacterized protein 65.5 33 0.0011 30.4 9.0 31 132-162 103-133 (138)
22 1fxk_A Prefoldin; archaeal pro 65.0 22 0.00076 28.5 7.2 74 13-86 18-103 (107)
23 1am9_A Srebp-1A, protein (ster 64.5 9.8 0.00034 30.6 5.0 53 189-255 21-73 (82)
24 1m1j_B Fibrinogen beta chain; 64.1 60 0.0021 34.0 12.0 52 230-281 91-142 (464)
25 4h22_A Leucine-rich repeat fli 61.7 55 0.0019 28.5 9.4 61 124-184 22-82 (103)
26 2b5u_A Colicin E3; high resolu 61.2 1.2E+02 0.0042 32.7 13.7 50 72-131 317-376 (551)
27 3vkg_A Dynein heavy chain, cyt 60.7 2.2E+02 0.0074 36.5 17.6 95 142-237 2031-2128(3245)
28 2ke4_A CDC42-interacting prote 60.6 26 0.00089 29.7 7.1 71 12-98 10-88 (98)
29 1hlo_A Protein (transcription 60.5 13 0.00043 29.6 4.9 53 188-253 26-78 (80)
30 1nkp_B MAX protein, MYC proto- 60.2 16 0.00056 29.0 5.5 54 188-254 16-69 (83)
31 2v4h_A NF-kappa-B essential mo 59.8 23 0.00078 31.2 6.8 66 12-81 40-109 (110)
32 1fxk_A Prefoldin; archaeal pro 58.8 68 0.0023 25.6 9.4 84 143-255 5-88 (107)
33 1l8d_A DNA double-strand break 56.4 40 0.0014 27.4 7.4 50 37-86 53-102 (112)
34 3mtu_A Tropomyosin alpha-1 cha 55.8 12 0.00041 30.2 4.1 32 10-42 16-51 (75)
35 3etw_A Adhesin A; antiparallel 54.1 1.2E+02 0.004 26.9 10.8 37 56-98 10-46 (119)
36 3mq9_A Bone marrow stromal ant 53.6 37 0.0013 33.3 7.9 56 383-441 371-432 (471)
37 1nlw_A MAD protein, MAX dimeri 52.9 19 0.00064 29.2 4.8 56 188-255 15-70 (80)
38 1zme_C Proline utilization tra 52.2 14 0.00049 27.4 3.7 27 230-256 42-68 (70)
39 1l8d_A DNA double-strand break 50.3 46 0.0016 27.1 6.8 24 232-255 64-87 (112)
40 2v66_B Nuclear distribution pr 50.2 1.3E+02 0.0044 26.3 13.5 63 53-115 8-74 (111)
41 3swk_A Vimentin; cytoskeleton, 49.9 47 0.0016 27.2 6.8 65 63-127 1-65 (86)
42 3na7_A HP0958; flagellar bioge 48.5 1.7E+02 0.0059 27.2 17.7 57 15-88 16-72 (256)
43 2zqm_A Prefoldin beta subunit 47.2 1.1E+02 0.0038 24.7 11.5 85 142-255 9-93 (117)
44 1wt6_A Myotonin-protein kinase 47.0 88 0.003 26.4 8.0 65 121-185 2-70 (81)
45 2jo8_A Serine/threonine-protei 43.6 46 0.0016 25.9 5.4 39 268-306 11-49 (51)
46 3s4r_A Vimentin; alpha-helix, 43.5 60 0.0021 27.0 6.5 44 411-454 48-91 (93)
47 3hnw_A Uncharacterized protein 43.2 90 0.0031 27.6 8.0 30 57-86 105-134 (138)
48 2wt7_A Proto-oncogene protein 43.1 74 0.0025 24.5 6.6 47 408-454 6-58 (63)
49 1t2k_D Cyclic-AMP-dependent tr 42.3 84 0.0029 23.8 6.7 47 408-454 5-57 (61)
50 3etv_A Protein transport prote 39.5 70 0.0024 32.9 7.5 24 13-36 12-35 (355)
51 1p9i_A Cortexillin I/GCN4 hybr 39.4 38 0.0013 24.0 3.9 26 230-255 4-29 (31)
52 1joc_A EEA1, early endosomal a 38.3 1.1E+02 0.0039 26.1 7.7 52 125-176 4-55 (125)
53 3ghg_A Fibrinogen alpha chain; 38.2 50 0.0017 35.7 6.5 81 241-325 66-150 (562)
54 1ic2_A Tropomyosin alpha chain 38.1 1.5E+02 0.0052 23.6 9.8 54 132-185 13-66 (81)
55 3swy_A Cyclic nucleotide-gated 37.4 87 0.003 23.8 6.0 40 236-275 2-45 (46)
56 3ghg_C Fibrinogen gamma chain; 37.4 3.1E+02 0.01 28.5 11.9 100 220-328 13-141 (411)
57 1m1j_A Fibrinogen alpha subuni 37.2 1.3E+02 0.0045 32.1 9.3 45 259-303 103-147 (491)
58 2wt7_A Proto-oncogene protein 36.3 86 0.0029 24.1 6.0 38 153-190 23-60 (63)
59 2akf_A Coronin-1A; coiled coil 35.1 19 0.00064 25.8 1.9 22 234-255 1-22 (32)
60 1ci6_A Transcription factor AT 34.7 74 0.0025 24.6 5.4 37 154-190 24-60 (63)
61 1t2k_D Cyclic-AMP-dependent tr 34.5 85 0.0029 23.8 5.7 35 155-189 24-58 (61)
62 2v71_A Nuclear distribution pr 33.5 3.1E+02 0.011 25.8 13.7 93 138-260 41-144 (189)
63 3ghg_A Fibrinogen alpha chain; 33.0 1.1E+02 0.0037 33.2 8.0 90 230-327 62-162 (562)
64 3ra3_A P1C; coiled coil domain 32.4 23 0.00077 24.6 1.9 22 234-255 2-23 (28)
65 1ytz_T Troponin T; muscle, THI 32.3 1.4E+02 0.0048 25.8 7.2 44 381-430 45-88 (107)
66 1fxk_C Protein (prefoldin); ar 30.9 2.3E+02 0.008 23.6 9.7 79 11-89 16-129 (133)
67 3t98_B Nucleoporin NUP58/NUP45 30.8 1.7E+02 0.0058 24.6 7.4 57 144-200 10-74 (93)
68 1ic2_A Tropomyosin alpha chain 30.5 2E+02 0.007 22.8 9.0 65 14-88 3-67 (81)
69 3i00_A HIP-I, huntingtin-inter 30.0 2.3E+02 0.0078 24.7 8.3 87 64-167 17-113 (120)
70 3u1c_A Tropomyosin alpha-1 cha 29.3 2.5E+02 0.0084 23.4 9.2 66 13-88 5-70 (101)
71 1j1d_B Troponin T, TNT; THIN f 29.0 1.1E+02 0.0039 26.3 6.1 44 382-431 46-89 (106)
72 1f5n_A Interferon-induced guan 28.7 1.9E+02 0.0066 30.7 9.1 55 114-168 463-523 (592)
73 3vmx_A Voltage-gated hydrogen 28.5 64 0.0022 24.9 4.0 26 11-36 12-37 (48)
74 3m91_A Proteasome-associated A 28.3 1.7E+02 0.0058 22.5 6.3 42 152-193 8-49 (51)
75 4avm_A Bridging integrator 2; 27.6 3.7E+02 0.013 24.8 13.2 26 11-36 34-59 (237)
76 1m1j_B Fibrinogen beta chain; 27.4 5.4E+02 0.018 27.0 11.9 47 146-192 100-146 (464)
77 2oqq_A Transcription factor HY 26.9 1.4E+02 0.005 22.5 5.5 33 232-265 3-35 (42)
78 1lrz_A FEMA, factor essential 26.8 1.8E+02 0.0062 28.5 7.9 55 229-284 244-298 (426)
79 2v66_B Nuclear distribution pr 25.7 3.3E+02 0.011 23.7 10.1 39 262-300 51-89 (111)
80 3ghg_B Fibrinogen beta chain; 25.0 2.2E+02 0.0075 30.1 8.5 65 211-276 62-132 (461)
81 4ati_A MITF, microphthalmia-as 24.9 35 0.0012 29.3 2.2 69 189-274 42-112 (118)
82 3ssb_C IMPI alpha, inducible m 24.6 20 0.00069 26.7 0.6 15 344-358 20-34 (40)
83 2ve7_A Kinetochore protein HEC 24.5 80 0.0027 30.9 4.9 22 206-227 255-277 (315)
84 1jnm_A Proto-oncogene C-JUN; B 24.4 72 0.0025 24.3 3.7 36 153-188 22-57 (62)
85 3swf_A CGMP-gated cation chann 24.0 1.6E+02 0.0053 24.4 5.8 42 236-277 4-49 (74)
86 1sig_A Sigma70, RNA polymerase 24.0 1.9E+02 0.0067 27.4 7.4 67 11-77 156-241 (339)
87 3u59_A Tropomyosin beta chain; 23.6 3.1E+02 0.01 22.5 9.2 52 133-184 17-68 (101)
88 1g6u_A Domain swapped dimer; d 23.6 77 0.0026 24.2 3.6 25 233-257 21-45 (48)
89 3abf_A 4-oxalocrotonate tautom 23.2 84 0.0029 22.3 3.7 27 205-231 33-59 (64)
90 2er8_A Regulatory protein Leu3 23.1 43 0.0015 25.0 2.2 25 229-253 46-70 (72)
91 2d1l_A Metastasis suppressor p 23.0 5.2E+02 0.018 25.0 10.6 57 241-300 140-201 (253)
92 1hjb_A Ccaat/enhancer binding 22.5 1.9E+02 0.0063 24.2 6.1 34 148-188 38-71 (87)
93 1joc_A EEA1, early endosomal a 21.9 2.8E+02 0.0096 23.7 7.3 32 51-89 7-38 (125)
94 1gu4_A CAAT/enhancer binding p 21.9 1.9E+02 0.0065 23.6 5.9 34 146-179 36-69 (78)
95 2pms_C Pneumococcal surface pr 21.8 4.3E+02 0.015 23.6 9.3 42 143-184 10-61 (125)
96 2dq0_A Seryl-tRNA synthetase; 21.6 2.6E+02 0.009 28.6 8.2 23 14-36 42-64 (455)
97 3d5a_X RF1, peptide chain rele 21.6 1.8E+02 0.0061 29.7 6.9 95 144-258 1-95 (354)
98 3pmr_A Amyloid-like protein 1; 21.2 5E+02 0.017 25.1 9.5 20 259-278 127-146 (219)
99 1a93_B MAX protein, coiled coi 20.9 93 0.0032 22.6 3.4 22 155-176 9-30 (34)
100 1jnm_A Proto-oncogene C-JUN; B 20.9 1.4E+02 0.0046 22.8 4.6 34 420-453 23-56 (62)
101 1sum_B Phosphate transport sys 20.9 4.4E+02 0.015 23.3 14.5 30 11-40 37-66 (235)
102 3fx7_A Putative uncharacterize 20.7 2.5E+02 0.0086 24.0 6.6 29 156-184 9-37 (94)
103 2lw1_A ABC transporter ATP-bin 20.5 3.3E+02 0.011 21.8 7.3 54 16-73 21-74 (89)
104 1dh3_A Transcription factor CR 20.2 81 0.0028 24.0 3.2 22 234-255 31-52 (55)
105 3zx6_A HAMP, methyl-accepting 20.2 5.8E+02 0.02 24.4 13.1 30 40-69 178-209 (341)
106 3viq_B Mating-type switching p 20.1 1E+02 0.0035 26.0 4.0 32 12-43 3-34 (85)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.29 E-value=2.5 Score=42.28 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 009351 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 198 (537)
Q Consensus 136 kaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~ 198 (537)
+.++..++.-+++..+++..++++..+.++|+.-..++.+.+..+++...+...+++=|+-|.
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 333444445566677777788888888888888888888888888888888888888777765
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=90.22 E-value=7.8 Score=32.87 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009351 14 ALMARIQQLEHERDELRKDIEQL 36 (537)
Q Consensus 14 ~l~~RI~qLe~ERdELrKDIEqL 36 (537)
.+..++..|+++.+.+...++.+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l 25 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555666666666666555554
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=88.17 E-value=1.9 Score=48.38 Aligned_cols=8 Identities=0% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHhhh
Q 009351 316 SDVIEEKT 323 (537)
Q Consensus 316 v~~ieekl 323 (537)
+..+.++|
T Consensus 1153 le~L~~~I 1160 (1184)
T 1i84_S 1153 LEALKTEL 1160 (1184)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 4
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=87.50 E-value=2.4 Score=35.43 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 009351 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (537)
Q Consensus 12 ~e~l~~RI~qLe~ERdELrKDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsE 87 (537)
-++.+.+|..||.+=-.|..+|+++.-+ ||+ ++. .-.|.+|+.|+.++...+.+|..|+-|+..
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~~--~~~------~~~----~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKGQ--GKS------RLG----DLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCC------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999998633 443 222 125888999999999999999998887754
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.54 E-value=28 Score=34.73 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhh
Q 009351 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (537)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~ 183 (537)
++..+++.++++......+.++.+..+-.++..+++.+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555566666666666666666666666666665543
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.09 E-value=5.8 Score=36.91 Aligned_cols=77 Identities=26% Similarity=0.312 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHH----------HhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 009351 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHF----------QRTAGLEQEIEILKQKIAACARENSNLQE 83 (537)
Q Consensus 14 ~l~~RI~qLe~ERdELrKDIEqLCMQQaGpgyl~vATRM~~----------qRta~LEQeiE~Lkkkl~~c~ren~nLQE 83 (537)
-|-.++..|+..|+.|.+|+-+|=-| |.-=.|... -|..+|+.|++.++..+.....||..|||
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~------L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAI------LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578889999999999999776443 222222222 37889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 009351 84 ELSEAYRIKGQLA 96 (537)
Q Consensus 84 ELsEAYRiK~qLa 96 (537)
-++.-=.=|+-+.
T Consensus 126 kl~~lEKe~a~~e 138 (168)
T 3o0z_A 126 MLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9987655554443
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=83.08 E-value=20 Score=30.30 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009351 14 ALMARIQQLEHERDELRKDIEQLC 37 (537)
Q Consensus 14 ~l~~RI~qLe~ERdELrKDIEqLC 37 (537)
++...|..+....++|..+++.+-
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~ 33 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.64 E-value=25 Score=30.28 Aligned_cols=108 Identities=21% Similarity=0.296 Sum_probs=64.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 009351 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (537)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqvkFfQs~vA~AFAERD~slmEaE 135 (537)
-.+.++.+|..|+.++.........|.+.....--=|..|... +. ||+++. -+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q--------------L~----------~E~~~l-~e-- 66 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ--------------VQ----------AEQDNL-AD-- 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-Hh--
Confidence 3456777888888877766555555554443333333333222 11 233331 12
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHH
Q 009351 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (537)
Q Consensus 136 kaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~ 191 (537)
+.|+-+.+...-.+++..+.++++.+.+....|..|+..-.++..+...+.+-|+
T Consensus 67 -~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 67 -AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2244455556666777777777777777778888888777777777766655554
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.74 E-value=29 Score=29.67 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccchhhccccccccccc
Q 009351 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (537)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsf 225 (537)
..+.++...+..++..+..++.+|..|...++..+.+-+.-++
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~------------------------------------- 78 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK------------------------------------- 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 4467777777778888888888888887777766554431100
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHHHh------hhhhhHHHH
Q 009351 226 NDTSTSKYISALEDELEKTRSSVENLQS------KLRMGLEIE 262 (537)
Q Consensus 226 n~tStskyisaLEeE~e~lr~si~~LQs------kLR~GLeIe 262 (537)
....-|+.||.++..+|..+...-. +++++|++|
T Consensus 79 ---~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~E 118 (129)
T 3tnu_B 79 ---DARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVE 118 (129)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334688899999999987765432 344555554
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.94 E-value=1.6e+02 Score=37.51 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=17.6
Q ss_pred HHHhhHHHHHhhhhhHHHHHHHHH
Q 009351 46 LAVATRMHFQRTAGLEQEIEILKQ 69 (537)
Q Consensus 46 l~vATRM~~qRta~LEQeiE~Lkk 69 (537)
|.....|+.++...++..++.|+.
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~ 1924 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNI 1924 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888877777764
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.30 E-value=7.7 Score=33.50 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009351 11 ESEALMARIQQLEHERDELRKDIEQLCMQ 39 (537)
Q Consensus 11 ~~e~l~~RI~qLe~ERdELrKDIEqLCMQ 39 (537)
....|..+|..|+.||+.|++.|+.|=|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999988774
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.95 E-value=94 Score=35.22 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=1.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 009351 58 AGLEQEIEILKQKIAACARENSNLQEELSE 87 (537)
Q Consensus 58 a~LEQeiE~Lkkkl~~c~ren~nLQEELsE 87 (537)
..||..|+.|+.+|..-..+|..|++++..
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~ 953 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953 (1080)
T ss_dssp ---------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899999998888999999887653
No 13
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=76.35 E-value=46 Score=30.37 Aligned_cols=121 Identities=17% Similarity=0.282 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHH
Q 009351 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE 139 (537)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqvkFfQs~vA~AFAERD~slmEaEkaKE 139 (537)
+|.+++.-..++.....-...|.++|--+-+--..|----...--+-...|.++++.+...- ||| -
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLK-----------EAE---~ 91 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK-----------EAE---T 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHH---H
Confidence 88888888888888888888888888776643333433333444555667777777765432 222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 009351 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR 197 (537)
Q Consensus 140 ~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR 197 (537)
+.+..-..++.++.-+..++-.+...|.-+..++.+|..--.. +..+--+||.+-
T Consensus 92 RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e---l~~~~~~~~~~~ 146 (155)
T 2efr_A 92 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK---VEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccchHHHH
Confidence 2233334455555555556566666666666666666532211 223456777664
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.87 E-value=75 Score=36.01 Aligned_cols=14 Identities=50% Similarity=0.835 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 009351 25 ERDELRKDIEQLCM 38 (537)
Q Consensus 25 ERdELrKDIEqLCM 38 (537)
|..+|++|++.|-.
T Consensus 961 e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 961 ETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 15
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.19 E-value=41 Score=28.78 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 009351 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQ 112 (537)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~KN~e~Ekq 112 (537)
.+.+|+.|++++...+.+|..|+-|+..+-..=..+-.-|..|+.+...+|.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d 70 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47789999999999999999998887665322211112234555555555543
No 16
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=74.03 E-value=14 Score=30.07 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 009351 13 EALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENSN 80 (537)
Q Consensus 13 e~l~~RI~qLe~ERdELrKDIEqL--------CMQQaGpgyl----~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~n 80 (537)
..+..+|.+|+.+..++..=++.| |.-..||-|| +-|.-.+-.|...++.+|+.|.+++..+..+=..
T Consensus 23 ~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 23 QLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666665544444 7778888775 4577788899999999999999998887777777
Q ss_pred hHHHHHHHH
Q 009351 81 LQEELSEAY 89 (537)
Q Consensus 81 LQEELsEAY 89 (537)
|+..|-+.+
T Consensus 103 lk~~l~~~~ 111 (117)
T 2zqm_A 103 LTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 17
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.07 E-value=32 Score=29.57 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccchhhccccccccccc
Q 009351 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (537)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsf 225 (537)
..+.++..++..++..+..++.+|..|...++..+.+.+.-++
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~------------------------------------- 80 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA------------------------------------- 80 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 4567777777778888877877887777777766554441000
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHHHh------hhhhhHHHH
Q 009351 226 NDTSTSKYISALEDELEKTRSSVENLQS------KLRMGLEIE 262 (537)
Q Consensus 226 n~tStskyisaLEeE~e~lr~si~~LQs------kLR~GLeIe 262 (537)
....-|+.||.++..+|..+...-. +++++|++|
T Consensus 81 ---~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~E 120 (131)
T 3tnu_A 81 ---QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQE 120 (131)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334688899999999987765432 344555554
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=71.52 E-value=66 Score=29.96 Aligned_cols=125 Identities=15% Similarity=0.219 Sum_probs=86.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccchh
Q 009351 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA 213 (537)
Q Consensus 134 aEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs 213 (537)
+.|.|-..-.++...+.++.-++|++..+.-.....+.|+.+++.+-.+.+. |-|.++.-- ++
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q---------Er~~r~q~s-e~------- 91 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA---------ERRDRGHDS-EM------- 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HH-------
Confidence 4466666677888889999999999999999999999999999999888872 112211110 00
Q ss_pred hcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 009351 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 293 (537)
Q Consensus 214 ~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~ 293 (537)
+ +.+..-|.+|++|++.++....++...- .+|..++..|||...-+.==+.=.|-.+|+-
T Consensus 92 --~-----------~elq~ri~~L~~El~~~k~~~~k~~~e~-------r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 92 --I-----------GDLQARITSLQEEVKHLKHNLEKVEGER-------KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp --H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 0 0123367888888888888777766554 4689999999998877653333456666655
Q ss_pred hh
Q 009351 294 HS 295 (537)
Q Consensus 294 h~ 295 (537)
|-
T Consensus 152 ~e 153 (168)
T 3o0z_A 152 LE 153 (168)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 19
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.64 E-value=17 Score=37.66 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=17.4
Q ss_pred HHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 009351 261 IENHLKKSVRELEKKIIHSDKFISNAIAELRLCHS 295 (537)
Q Consensus 261 IenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~ 295 (537)
.+|-...-...||++++++++-|.+.|..|+-.-.
T Consensus 107 ndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~ 141 (390)
T 1deq_A 107 NDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQK 141 (390)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333344445566666655555555554444333
No 20
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=68.60 E-value=8.1 Score=31.73 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 009351 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (537)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQs 253 (537)
++=+.|..+|.-.|.+.+-+-..|.++|- .+-.||..|++++..+...++.|+.
T Consensus 20 ~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~------------~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 20 ELKRSFFALRDQIPELENNEKAPKVVILK------------KATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHTTCGGGTTCTTCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999888775444556666552 2557999999999888887776554
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.47 E-value=33 Score=30.40 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=15.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009351 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (537)
Q Consensus 132 mEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~ 162 (537)
|+.|.++..-+..-.+++.++.++.++++.+
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333444455555555555555444
No 22
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=65.01 E-value=22 Score=28.48 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 009351 13 EALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENSN 80 (537)
Q Consensus 13 e~l~~RI~qLe~ERdELrKDIEqL--------CMQQaGpgyl----~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~n 80 (537)
..+...+++|+.+..++..=++.| |.-..||-|| +-|.-.+-.|...++.+|+.|.+++..+..+=..
T Consensus 18 ~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 18 QAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777666655433333 8888998875 4577888999999999999999988877666665
Q ss_pred hHHHHH
Q 009351 81 LQEELS 86 (537)
Q Consensus 81 LQEELs 86 (537)
|+..|-
T Consensus 98 lk~~l~ 103 (107)
T 1fxk_A 98 MQVNIQ 103 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 23
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=64.47 E-value=9.8 Score=30.65 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 009351 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQskL 255 (537)
+=+.|.++|.-.|.| -+-.+|+++|- .+-.||..|+.++..|....+.|+..+
T Consensus 21 in~~f~~L~~lvP~~--~~k~~Ka~IL~------------~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 21 INDKIIELKDLVVGT--EAKLNKSAVLR------------KAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHTCS--SCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888876654 23345665552 256799999999999998888887654
No 24
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=64.10 E-value=60 Score=34.05 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 009351 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK 281 (537)
Q Consensus 230 tskyisaLEeE~e~lr~si~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk 281 (537)
.++|-..++..++.|++.++.|-+.-.-..++.++|+......|++.--+..
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n 142 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDI 142 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhh
Confidence 6788888888888888888888877777777777877776666665433333
No 25
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=61.68 E-value=55 Score=28.54 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=51.0
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhH
Q 009351 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (537)
Q Consensus 124 FAERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e 184 (537)
--|+-+-+-+++-.|-+=|.|-..+++++...+|-.+.+..+|+..+.|+.++..++++..
T Consensus 22 DNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 22 DNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567788888888888889999999999999999999999999999999988754
No 26
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=61.17 E-value=1.2e+02 Score=32.66 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh----------hHHHHHhhhhhhh
Q 009351 72 AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQG----------CMAAAFAERDNSV 131 (537)
Q Consensus 72 ~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqvkFfQs----------~vA~AFAERD~sl 131 (537)
...-|++...+.||.+|- +. -.-++...-|-|+|||| .||.|.|++|+-.
T Consensus 317 ~~Aer~~e~a~ael~~a~-------k~---~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 317 EAAERNYERARAELNQAN-------ED---VARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 444555555556665551 11 11223344578899999 9999999998743
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.71 E-value=2.2e+02 Score=36.46 Aligned_cols=95 Identities=6% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccchhhcccccc-
Q 009351 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSA- 220 (537)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~- 220 (537)
.+.-+++++++.++.+|+....+..+-...|+.+.+.-+...+...+.|...=.=+.|=.+. --++...-..|..|.-
T Consensus 2031 ~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~-~~~l~~~~~~L~GD~LL 2109 (3245)
T 3vkg_A 2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ-SENFNTQMSTVVGDVVL 2109 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH-HHHHHHHHHhccHHHHH
Confidence 34445566666666666666666666666667766666666666666666443222221111 1122333344555532
Q ss_pred --cccccCCcchHHHHHHH
Q 009351 221 --EMWSFNDTSTSKYISAL 237 (537)
Q Consensus 221 --~~Wsfn~tStskyisaL 237 (537)
--=||.|+-|+.|=..|
T Consensus 2110 aaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2110 ASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 23466677777775554
No 28
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=60.63 E-value=26 Score=29.67 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHH--------hhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 009351 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQ--------RTAGLEQEIEILKQKIAACARENSNLQE 83 (537)
Q Consensus 12 ~e~l~~RI~qLe~ERdELrKDIEqLCMQQaGpgyl~vATRM~~q--------Rta~LEQeiE~Lkkkl~~c~ren~nLQE 83 (537)
+=+...|...|++..++|++||++-=-+.-| .++|+-- =...++++|..+.++|...-.
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei~ke~~~reg------l~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~------- 76 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSRELQKEVDQREA------LKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKL------- 76 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH------HHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHH-------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHH-------
Confidence 4457899999999999999999997655443 2333211 122235555555555443322
Q ss_pred HHHHHHHHHHHHHHH
Q 009351 84 ELSEAYRIKGQLADL 98 (537)
Q Consensus 84 ELsEAYRiK~qLadL 98 (537)
+.|++..+|+++
T Consensus 77 ---el~K~q~~L~e~ 88 (98)
T 2ke4_A 77 ---EVQKYEAWLAEA 88 (98)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 457777777776
No 29
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.46 E-value=13 Score=29.57 Aligned_cols=53 Identities=11% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 009351 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (537)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQs 253 (537)
++=..|.++|.-.|.+.+ +-..|.++|- .+-.||..|++++..|...++.|+.
T Consensus 26 ~in~~f~~Lr~lvP~~~~-~k~sK~~iL~------------~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 26 HIKDSFHSLRDSVPSLQG-EKASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHSGGGTT-SCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCcCCCC-CCccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344578888888776642 1134444442 3677999999999999999988864
No 30
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.22 E-value=16 Score=28.97 Aligned_cols=54 Identities=11% Similarity=0.274 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 009351 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (537)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQsk 254 (537)
.+=+.|.++|.-.|.|.+ +-..|.++|- .+-.||..|++++..+...++.|...
T Consensus 16 ~in~~f~~Lr~lvP~~~~-~k~sK~~iL~------------~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 16 HIKDSFHSLRDSVPSLQG-EKASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHTTSGGGTT-SCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCC-CCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578889988877642 1234444442 36679999998888887777666543
No 31
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=59.81 E-value=23 Score=31.24 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCchHHHhhHHHHHhhhh--hHHHHHHHHHHHHHhhhhhcch
Q 009351 12 SEALMARIQQLEHERDELRKDIEQLCM--QQAGPSYLAVATRMHFQRTAG--LEQEIEILKQKIAACARENSNL 81 (537)
Q Consensus 12 ~e~l~~RI~qLe~ERdELrKDIEqLCM--QQaGpgyl~vATRM~~qRta~--LEQeiE~Lkkkl~~c~ren~nL 81 (537)
.+.-+..|..|..|...+++|+|++=| ||+-+ | -...++.|+|- +-.+++.|+.+++...|.|..|
T Consensus 40 L~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~I-Y---~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 40 LVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI-Y---KADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 344566777788888888899998877 66532 3 34567778763 7788999999999888888765
No 32
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=58.83 E-value=68 Score=25.62 Aligned_cols=84 Identities=8% Similarity=0.164 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccchhhcccccccc
Q 009351 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEM 222 (537)
Q Consensus 143 ~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~ 222 (537)
.++.+|+.++.++..+.+.+...+ .++... ..|++ +-..+..+.+|--++.+.-.
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~-------~~~~e~-------~~~~~----------EL~~l~~d~~vy~~iG~vfv- 59 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVE-------MQINET-------QKALE----------ELSRAADDAEVYKSSGNILI- 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHHSCTTCCEEEEETTEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHcCCCCchHHHHHhHHHH-
Confidence 467788888888887776653332 222222 12222 11223334455555554333
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 009351 223 WSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 223 Wsfn~tStskyisaLEeE~e~lr~si~~LQskL 255 (537)
-.+...++..|+...+.+...|+.|..++
T Consensus 60 ----~~~~~e~~~~L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 60 ----RVAKDELTEELQEKLETLQLREKTIERQE 88 (107)
T ss_dssp ----EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566667777777666666666665554
No 33
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=56.36 E-value=40 Score=27.42 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=27.8
Q ss_pred HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 009351 37 CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (537)
Q Consensus 37 CMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELs 86 (537)
|.|.-.|.+..-.-.-+-.+...+..+|..|+.++..+.++-..|..++.
T Consensus 53 Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 53 CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433222234445566666677777777776666655555555
No 34
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=55.83 E-value=12 Score=30.20 Aligned_cols=32 Identities=34% Similarity=0.675 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 009351 10 NESEALMARIQQLEHERD----ELRKDIEQLCMQQAG 42 (537)
Q Consensus 10 ~~~e~l~~RI~qLe~ERd----ELrKDIEqLCMQQaG 42 (537)
.+.+..+.++..||.||| .|| |||-+|-+.-|
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLR-diE~l~q~~e~ 51 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLR-NIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHh
Confidence 356778899999999999 775 89999987544
No 35
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=54.14 E-value=1.2e+02 Score=26.89 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 009351 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (537)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadL 98 (537)
|-.+||++++.|.+ .|++-+++|=.+|=.-...||+.
T Consensus 10 ~l~~Leae~q~L~~------~E~qry~~eka~AE~A~~~La~~ 46 (119)
T 3etw_A 10 ELQALDAEYQNLAN------QEEARFNEERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777776 46666666666666666666654
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.56 E-value=37 Score=33.27 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh------hHHHHHHHH
Q 009351 383 SETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVT------TEKVKALME 441 (537)
Q Consensus 383 S~aLAqAL~EKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QVt------~EKVkaLmE 441 (537)
.+..+..+++++.++|==...+. =-+|+++.||+++.++|+|+.|+. |--|-+||+
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVM---EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH---HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence 34445667888888763222221 125999999999999999999975 345677775
No 37
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=52.94 E-value=19 Score=29.20 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 009351 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQskL 255 (537)
++=+.|+.+|...|.+.+.+-..|.++| . ..-.||..|+++...+...++.|+...
T Consensus 15 ~lk~~f~~Lr~~vP~~~~~~k~sk~~iL-~-----------kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 15 HLRLSLEKLKGLVPLGPDSSRHTTLSLL-T-----------KAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHSSCCCSSSCCCTTHHHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCHHHHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446899999988765332222233332 1 244699999999888887777666543
No 38
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=52.17 E-value=14 Score=27.38 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 009351 230 TSKYISALEDELEKTRSSVENLQSKLR 256 (537)
Q Consensus 230 tskyisaLEeE~e~lr~si~~LQskLR 256 (537)
..+||..|++.++.|...|..|++.|.
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999998763
No 39
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.26 E-value=46 Score=27.09 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhh
Q 009351 232 KYISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 232 kyisaLEeE~e~lr~si~~LQskL 255 (537)
..|+..+.++..+++.+..|...+
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i 87 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRK 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666665555555443
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.21 E-value=1.3e+02 Score=26.28 Aligned_cols=63 Identities=25% Similarity=0.230 Sum_probs=33.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhh----hcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 009351 53 HFQRTAGLEQEIEILKQKIAACARE----NSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKF 115 (537)
Q Consensus 53 ~~qRta~LEQeiE~Lkkkl~~c~re----n~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqvkF 115 (537)
+-.+.+.|..|++.+|.|+....++ ...||.|+....-.+..|..--+-==-+|-.+|.+-|-
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3445556666666666666666554 33466666665555544442111112246666655544
No 41
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=49.94 E-value=47 Score=27.23 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhh
Q 009351 63 EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER 127 (537)
Q Consensus 63 eiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqvkFfQs~vA~AFAER 127 (537)
||+.|+.++...+.+|..|.-|+-.+.-.=..+-.-|..|+.+...+|..+.=+..-|=.|+--|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.47 E-value=1.7e+02 Score=27.19 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 009351 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (537)
Q Consensus 15 l~~RI~qLe~ERdELrKDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEA 88 (537)
+-.+|..|+|+|.+|.+.|+.| -...+++...++.++..+....++-..+..++.++
T Consensus 16 lD~~i~~l~~~~~~lp~el~~l-----------------e~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKA-----------------LNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665555433 23445566666666666666666655566555543
No 43
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.23 E-value=1.1e+02 Score=24.65 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccchhhccccccc
Q 009351 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAE 221 (537)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~ 221 (537)
..++.+|+.++.++..+.+.+...+ .++... ..|++ +-..+..+.+|-.++.+.-.
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~-------~~~~e~-------~~~~~----------eL~~l~~d~~vy~~iG~vfv 64 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQ-------LELTEA-------KKALD----------EIESLPDDAVVYKTVGTLIV 64 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHTSCTTCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHcCCCCcHhHHHhhHHHh
Confidence 3566788888888887766664332 222222 12332 11223344556655554333
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 009351 222 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 222 ~Wsfn~tStskyisaLEeE~e~lr~si~~LQskL 255 (537)
-.+...++..|++..+.+...|..|..++
T Consensus 65 -----~~~~~ea~~~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 65 -----KTTKDKAVAELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp -----EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776666554
No 44
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=47.04 E-value=88 Score=26.38 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=36.4
Q ss_pred HHHHhhhhhhhHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHh
Q 009351 121 AAAFAERDNSVMEAEKAKEKEE----LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (537)
Q Consensus 121 A~AFAERD~slmEaEkaKE~Ee----~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~ 185 (537)
|-+|++-|-++.|+--|-+.|- .++.++..+..-.--.+|.+.+-+..|..|++++..++++++-
T Consensus 2 ~~~~~~~~~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 2 AMAEAEAEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777766655543 3333444343333445556666666788888898888888773
No 45
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=43.57 E-value=46 Score=25.90 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=34.7
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 009351 268 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 306 (537)
Q Consensus 268 ~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ 306 (537)
.+.+|+.+.+.+|..|.--|.+|+..|...|.=|...++
T Consensus 11 s~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 11 TVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 466788888999999999999999999999998887765
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=43.51 E-value=60 Score=26.96 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=37.8
Q ss_pred HhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 009351 411 RNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (537)
Q Consensus 411 ~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e 454 (537)
.+.....+..|.+|++.|..++.+|.++..|+..|..+...++.
T Consensus 48 ~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 48 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667889999999999999999999999999998887774
No 47
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.23 E-value=90 Score=27.58 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 009351 57 TAGLEQEIEILKQKIAACARENSNLQEELS 86 (537)
Q Consensus 57 ta~LEQeiE~Lkkkl~~c~ren~nLQEELs 86 (537)
...+.++++.|++++..+.+++..|+-+|-
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666665554
No 48
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.15 E-value=74 Score=24.46 Aligned_cols=47 Identities=28% Similarity=0.223 Sum_probs=38.5
Q ss_pred HHHHhhhHHHH------HHHHHHHHhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 009351 408 LLERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (537)
Q Consensus 408 llE~~~n~~Lq------~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e 454 (537)
-+|+|..+|-. ..+.+|+....+++.+.-..-.+++.|++++..|+.
T Consensus 6 rrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 6 RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777753 248899999999999999999999999999998874
No 49
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.34 E-value=84 Score=23.79 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=37.7
Q ss_pred HHHHhhhHHHHH------HHHHHHHhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 009351 408 LLERNVNSALQK------KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (537)
Q Consensus 408 llE~~~n~~Lq~------~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e 454 (537)
.+|+|.-+|..- .+++|+......+.+.-..-.++..|+.+...|+.
T Consensus 5 r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 5 FLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467787777542 38888888888888888888899999999888874
No 50
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=39.48 E-value=70 Score=32.88 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009351 13 EALMARIQQLEHERDELRKDIEQL 36 (537)
Q Consensus 13 e~l~~RI~qLe~ERdELrKDIEqL 36 (537)
=.+..+|++++.|||+|..-++..
T Consensus 12 l~id~~I~~i~~eRd~La~~lq~~ 35 (355)
T 3etv_A 12 LNINDRIKQVQNERNELASKLQNL 35 (355)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999887664
No 51
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=39.37 E-value=38 Score=23.97 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhh
Q 009351 230 TSKYISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 230 tskyisaLEeE~e~lr~si~~LQskL 255 (537)
....+++||-|+..|+++++.|-.|+
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999886553
No 52
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.26 E-value=1.1e+02 Score=26.10 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=29.1
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhH
Q 009351 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (537)
Q Consensus 125 AERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl 176 (537)
.|||..+=.|=+++.--+..-.++.++..++.+.++.+.+..+.|..||++.
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 3555554444444432333445666666666666666666666666666554
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.19 E-value=50 Score=35.71 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhH--HHHHHHHH-HHHHhhhhHHHHHHHhhhhcchhhhhhHH
Q 009351 241 LEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSD--KFISNAIA-ELRLCHSQLRVHVVNSLEEGRSHIKSISD 317 (537)
Q Consensus 241 ~e~lr~si~~LQskLR~GLeIenhLkk~vr~Lekkqi~~d--k~i~ngi~-~lq~~h~~~R~~Im~lL~ee~s~i~s~v~ 317 (537)
++.||++++.+|.+= -.|+++.+.-...|.+++.... .-..|-++ +|++.|...+..|.+-+ .--.-|.++|.
T Consensus 66 INELKnqLEdlsKns---Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsnLe 141 (562)
T 3ghg_A 66 INKLKNSLFEYQKNN---KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHTHHHHHH---HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 555566666664332 4677777766777766665422 12456667 89999999999998888 44455666666
Q ss_pred HHHhhh-cc
Q 009351 318 VIEEKT-QH 325 (537)
Q Consensus 318 ~ieekl-~~ 325 (537)
.+--+| ++
T Consensus 142 dq~~kIQRL 150 (562)
T 3ghg_A 142 AQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665566 44
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.12 E-value=1.5e+02 Score=23.56 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHh
Q 009351 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (537)
Q Consensus 132 mEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~ 185 (537)
.|++.|.++-+..-+++.+.+.|....++.+....+-+..|+.|+...++....
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888889999999999999999988888888888888888877663
No 55
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=37.40 E-value=87 Score=23.79 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhHHHHHhhhhh---hHHH-HHHhHHhHHHHHHh
Q 009351 236 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKK 275 (537)
Q Consensus 236 aLEeE~e~lr~si~~LQskLR~---GLeI-enhLkk~vr~Lekk 275 (537)
.||+-++.|.++++.||.++.= .++- ...|+.++-.||++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788899999999999988642 1221 23378888888864
No 56
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=37.35 E-value=3.1e+02 Score=28.47 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=54.6
Q ss_pred ccccccCCc------chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHh-------------------HHhHHHHHH
Q 009351 220 AEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHL-------------------KKSVRELEK 274 (537)
Q Consensus 220 ~~~Wsfn~t------StskyisaLEeE~e~lr~si~~LQskLR~GLeIenhL-------------------kk~vr~Lek 274 (537)
.+.-+|+-| -.+||-......+..|...|+.+-|.=.-..+.-++| ++.-..||+
T Consensus 13 ~~fG~~CPTtCgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~ 92 (411)
T 3ghg_C 13 ERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92 (411)
T ss_dssp -CCSCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCCCcchHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHH
Confidence 345667632 3677766666666666666666655444444444444 222335555
Q ss_pred hhhhhHHHH---HHHHHHHHHhhhhHHHHHHHhhhhcchhhhhhHHHHHhhh-ccccc
Q 009351 275 KIIHSDKFI---SNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QHCDD 328 (537)
Q Consensus 275 kqi~~dk~i---~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl-~~~~n 328 (537)
+..+ +..| .+-|..|+.-....+..| ..|+..|..++.+. +-|.+
T Consensus 93 ~~~~-~~~~~~~~~~i~~l~~~~~~~~~~i--------~~L~~~v~~l~~~~~~~~~~ 141 (411)
T 3ghg_C 93 IMKY-EASILTHDSSIRYLQEIYNSNNQKI--------VNLKEKVAQLEAQCQEPCKD 141 (411)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCSCCEE
T ss_pred HHHH-HHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcccCCc
Confidence 5544 4444 556666766555555444 45566666666666 44443
No 57
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=37.22 E-value=1.3e+02 Score=32.13 Aligned_cols=45 Identities=11% Similarity=0.342 Sum_probs=27.3
Q ss_pred HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009351 259 LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVN 303 (537)
Q Consensus 259 LeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~ 303 (537)
-..+|-...-...||+++++++.-|-+.|.-|+-.-.-.|+...+
T Consensus 103 ~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 103 QQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556788888888877777776665554444444333
No 58
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.35 E-value=86 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHH
Q 009351 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (537)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI 190 (537)
.++.+++......+..|..|+.++..+.++...+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777778888888888777777665554
No 59
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.12 E-value=19 Score=25.81 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 009351 234 ISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 234 isaLEeE~e~lr~si~~LQskL 255 (537)
||.|||++..|.+-+.+||.++
T Consensus 1 isrlee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 4678999998888888887654
No 60
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.66 E-value=74 Score=24.63 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHH
Q 009351 154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (537)
Q Consensus 154 R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI 190 (537)
+..+++....+.+.-|+.|...+..++.++..+..+|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555556666666666666665555544
No 61
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.50 E-value=85 Score=23.77 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHH
Q 009351 155 LEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189 (537)
Q Consensus 155 ~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kV 189 (537)
+.+++.........|..|+.++..+.+++..+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445556666666666666666655443
No 62
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=33.50 E-value=3.1e+02 Score=25.78 Aligned_cols=93 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHh----hHhHHHHHHHHHHHhhhhhhhhccccccchh
Q 009351 138 KEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL----NESFKEVINKFYEIRQQSLEVLETSWEDKCA 213 (537)
Q Consensus 138 KE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq----~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs 213 (537)
+|-|..|-+.+...++|.+.+++.+..++.-.+.+...+.....+ ...+.+=|..+=..+.
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~--------------- 105 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE--------------- 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred hcccccccccccCCcchHHHHHHHHHHHHHHH-------HhHHHHHhhhhhhHH
Q 009351 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTR-------SSVENLQSKLRMGLE 260 (537)
Q Consensus 214 ~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr-------~si~~LQskLR~GLe 260 (537)
+..+||-.||+.||.|- +++.-+++++-..+|
T Consensus 106 ---------------~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiE 144 (189)
T 2v71_A 106 ---------------QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIE 144 (189)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHH
No 63
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.00 E-value=1.1e+02 Score=33.17 Aligned_cols=90 Identities=16% Similarity=0.272 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHH-----------HhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhHH
Q 009351 230 TSKYISALEDELEKTR-----------SSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLR 298 (537)
Q Consensus 230 tskyisaLEeE~e~lr-----------~si~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R 298 (537)
.-+.|..|-.+++.+. +..+.|+.++...-..+|....-..+|++++++++.=|-|-|+-|+..-.-.|
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLe 141 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766553 55667777777777888877777779999999988888888777766655555
Q ss_pred HHHHHhhhhcchhhhhhHHHHHhhhcccc
Q 009351 299 VHVVNSLEEGRSHIKSISDVIEEKTQHCD 327 (537)
Q Consensus 299 ~~Im~lL~ee~s~i~s~v~~ieekl~~~~ 327 (537)
+.+.+|.+ +=.-|..+|+-|-
T Consensus 142 dq~~kIQR--------LEvDIdiqirsCK 162 (562)
T 3ghg_A 142 AQLVDMKR--------LEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHH--------HHHHHHHHHHHGG
T ss_pred HHHHHHHH--------HHHHHHHHHHhcc
Confidence 55544433 3334555664443
No 64
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.42 E-value=23 Score=24.63 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 009351 234 ISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 234 isaLEeE~e~lr~si~~LQskL 255 (537)
|.|||=|++.|..+|+-|.+|+
T Consensus 2 idalefendaleqkiaalkqki 23 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHH
Confidence 5688888888888888887765
No 65
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=32.30 E-value=1.4e+02 Score=25.77 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHHHHHHhhcHHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 009351 381 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQ 430 (537)
Q Consensus 381 d~S~aLAqAL~EKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~Q 430 (537)
+.=..+|.-||+++..| ++|||=||..+..-- ..|.+|...+.+
T Consensus 45 ~~L~e~~keLh~~I~~l-----EeEKYDlE~kv~kq~-yEI~eL~~rV~d 88 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQL-----QTEKYDFAEQIKRKK-YEIVTLRNRIDQ 88 (107)
T ss_dssp SHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHhhh-hHHHHHHHHHHH
Confidence 45678999999998775 899999999887763 347777665555
No 66
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.88 E-value=2.3e+02 Score=23.58 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------cCCch-----HHHhhHHHHH
Q 009351 11 ESEALMARIQQLEHERDELRKDIEQLCMQQ------------------------------AGPSY-----LAVATRMHFQ 55 (537)
Q Consensus 11 ~~e~l~~RI~qLe~ERdELrKDIEqLCMQQ------------------------------aGpgy-----l~vATRM~~q 55 (537)
..+.+..++.+|+....++.+=++.|-.=. -|.|| ++=|...+-.
T Consensus 16 ~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ 95 (133)
T 1fxk_C 16 QVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKS 95 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHH
Confidence 356788888888888888887777665422 23344 2346677888
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 009351 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (537)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAY 89 (537)
|...|+..++++++.+......=..++++|.+.|
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888887777666666777776665
No 67
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.85 E-value=1.7e+02 Score=24.57 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH--------hHhhhHHHHHHhhHhHHHHHHHHHHHhhhh
Q 009351 144 MSQKFNEFQTRLEELSSENIELKKQNA--------TLRFDLEKQEELNESFKEVINKFYEIRQQS 200 (537)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~qk~~n~--------aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~ 200 (537)
+.+.+++|+.|+..|.+.+.+.++.=. +.|.=...+..+.++|.-+..+...|-.+.
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V 74 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENV 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999888887665421 234445677888888888888888776543
No 68
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=30.50 E-value=2e+02 Score=22.79 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 009351 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (537)
Q Consensus 14 ~l~~RI~qLe~ERdELrKDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEA 88 (537)
++..+|++|+.+-|...-..+++--+- +---+|...+|++|..|++|+..+--+=...++.|..|
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l----------~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADK----------KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888877777766654321 22235777888888888888766555555555544443
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.05 E-value=2.3e+02 Score=24.74 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHH
Q 009351 64 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 143 (537)
Q Consensus 64 iE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqvkFfQs~vA~AFAERD~slmEaEkaKE~Ee~ 143 (537)
|+.|+..+...--+..++ ..||-|+=.+|-.- ..+||-++-+...+ ++.++.|++..+..-+.
T Consensus 17 Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~-------i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 17 IERLYREISGLKAQLENM---KTESQRVVLQLKGH-------VSELEADLAEQQHL-------RQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHh
Q 009351 144 M----------SQKFNEFQTRLEELSSENIELKK 167 (537)
Q Consensus 144 m----------~qk~~~~~~R~~E~~s~~~~qk~ 167 (537)
. ..++.+++.|..-.+-...+.|.
T Consensus 80 l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe 113 (120)
T 3i00_A 80 LRRQREDTEKAQRSLSEIERKAQANEQRYSKLKE 113 (120)
T ss_dssp HHTTCC----------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 70
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.25 E-value=2.5e+02 Score=23.35 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 009351 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (537)
Q Consensus 13 e~l~~RI~qLe~ERdELrKDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEA 88 (537)
+.+..+|+.|..+-|...-..+++. .--+=.-+|...+|+||..|++|+...-.+=..+++.|.+|
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e----------~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAE----------ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 71
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=28.97 E-value=1.1e+02 Score=26.35 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHHHhhcHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 009351 382 ASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 431 (537)
Q Consensus 382 ~S~aLAqAL~EKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QV 431 (537)
.=..+|.-||+++..| ++|||=||..+..-- ..|.+|...+.++
T Consensus 46 ~L~e~~keLh~~I~~L-----EeEKYDlE~kv~kq~-yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNL-----EAEKFDLQEKFKQQK-YEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH-----HHhhhhHHHHHHhhh-HHHHHHHHHHHHh
Confidence 3456777777777664 788888887776652 3477776666554
No 72
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.75 E-value=1.9e+02 Score=30.67 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=37.3
Q ss_pred HHhhhh--HHHHHhhhhhhhHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 009351 114 KFFQGC--MAAAFAERDNSVMEAEKAKEKEEL----MSQKFNEFQTRLEELSSENIELKKQ 168 (537)
Q Consensus 114 kFfQs~--vA~AFAERD~slmEaEkaKE~Ee~----m~qk~~~~~~R~~E~~s~~~~qk~~ 168 (537)
.|+++. ++.+|---|.+|.+.||+.+.|.+ +-++-..++++.++++..|..|++.
T Consensus 463 ~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~ 523 (592)
T 1f5n_A 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523 (592)
T ss_dssp HHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466654 567888889999888877665543 5555566666667777667666543
No 73
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=28.48 E-value=64 Score=24.95 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 009351 11 ESEALMARIQQLEHERDELRKDIEQL 36 (537)
Q Consensus 11 ~~e~l~~RI~qLe~ERdELrKDIEqL 36 (537)
-+..|..||++|++-++++...||.|
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 46788889999988887776666554
No 74
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.29 E-value=1.7e+02 Score=22.45 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHH
Q 009351 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 193 (537)
Q Consensus 152 ~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KF 193 (537)
+.|+.+++..+...-..|..|-.-|..-..+...+...|+++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888888888888888888888888764
No 75
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=27.58 E-value=3.7e+02 Score=24.80 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 009351 11 ESEALMARIQQLEHERDELRKDIEQL 36 (537)
Q Consensus 11 ~~e~l~~RI~qLe~ERdELrKDIEqL 36 (537)
.-+.+.+|...+|.+-..|.||+...
T Consensus 34 ~Fe~~e~rF~~le~~~~kL~k~~k~y 59 (237)
T 4avm_A 34 RFEQSASNFYQQQAEGHKLYKDLKNF 59 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999853
No 76
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.39 E-value=5.4e+02 Score=27.03 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHH
Q 009351 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 192 (537)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~K 192 (537)
..+.+++.++.+++-.-...+++-.+||..+.....+......+|++
T Consensus 100 ~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~ 146 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSE 146 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 44555555555554444444555556777766666555544444443
No 77
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.86 E-value=1.4e+02 Score=22.54 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHh
Q 009351 232 KYISALEDELEKTRSSVENLQSKLRMGLEIENHL 265 (537)
Q Consensus 232 kyisaLEeE~e~lr~si~~LQskLR~GLeIenhL 265 (537)
.|++.||.....+....+.|.+++.- |.=||..
T Consensus 3 aYl~eLE~r~k~le~~naeLEervst-Lq~EN~m 35 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLST-LQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHH
Confidence 69999999988888887777765532 3334443
No 78
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.84 E-value=1.8e+02 Score=28.54 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHH
Q 009351 229 STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFIS 284 (537)
Q Consensus 229 StskyisaLEeE~e~lr~si~~LQskLR~GLeIenhLkk~vr~Lekkqi~~dk~i~ 284 (537)
...+|++.|+++++.+.+.++++..++.-.-.- .=.+++.+.++++...+++-+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDIEKRPEN-KKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999887321000 0134555566665555554443
No 79
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.73 E-value=3.3e+02 Score=23.71 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=24.5
Q ss_pred HHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhHHHH
Q 009351 262 ENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVH 300 (537)
Q Consensus 262 enhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~ 300 (537)
-..|++.+|.||.+.--+..--|+..+.|.-+.+.+=.-
T Consensus 51 ~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 51 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344677788888877666665666666666655554333
No 80
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=25.02 E-value=2.2e+02 Score=30.13 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=45.6
Q ss_pred chhhcccccccccccCCc------chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh
Q 009351 211 KCACLLLDSAEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 276 (537)
Q Consensus 211 Kcs~LL~Ds~~~Wsfn~t------StskyisaLEeE~e~lr~si~~LQskLR~GLeIenhLkk~vr~Lekkq 276 (537)
-..|+..| .++-+|+-| -.+||-......+..|+..|+.+-|.=.-..+.-++|+-..+.-|+..
T Consensus 62 ~g~c~~~~-~~fG~yCPTtCglad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~ 132 (461)
T 3ghg_B 62 AGGCLHAD-PDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQV 132 (461)
T ss_dssp CCCCBCSS-TTTCBCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCccccC-cccCCcCCCcchHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCC
Confidence 34455444 356788833 478888888888888888888888777777777788776666555443
No 81
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=24.89 E-value=35 Score=29.30 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhhhhhcc-ccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHH-hH
Q 009351 189 VINKFYEIRQQSLEVLET-SWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENH-LK 266 (537)
Q Consensus 189 VI~KFyeiR~~~~e~~~~-s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQskLR~GLeIenh-Lk 266 (537)
+=++|.++|.-.|.|.+. .--+|.++|- .+-.||..|++++..+......+. -|+-.|. |.
T Consensus 42 In~~~~~L~~lvP~~~~~~~k~~Ka~IL~------------~aieYIk~Lq~~~~~l~~~~~~~~-----~l~~~n~~L~ 104 (118)
T 4ati_A 42 INDRIKELGTLIPKSNDPDMRWNKGTILK------------ASVDYIRKLQREQQRAKDLENRQK-----KLEHANRHLL 104 (118)
T ss_dssp HHHHHHHHHHHSCCC----CCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHhhccCccccCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 335788999888877431 1224555542 266799999999988875422211 1333333 66
Q ss_pred HhHHHHHH
Q 009351 267 KSVRELEK 274 (537)
Q Consensus 267 k~vr~Lek 274 (537)
.++.+||.
T Consensus 105 ~riqeLE~ 112 (118)
T 4ati_A 105 LRVQELEM 112 (118)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 77777775
No 82
>3ssb_C IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=24.59 E-value=20 Score=26.73 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.9
Q ss_pred cccccccceeeccCC
Q 009351 344 LDEFECRDVHINNDA 358 (537)
Q Consensus 344 ~~e~ec~dVhv~~d~ 358 (537)
-|+++|+|+|+-+..
T Consensus 20 ac~n~c~~~~~qn~t 34 (40)
T 3ssb_C 20 ACDNVCADLHIQNKT 34 (40)
T ss_dssp SCCCBGGGTTTCCSS
T ss_pred hHhhhhhhhhccccc
Confidence 589999999998764
No 83
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.47 E-value=80 Score=30.85 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=4.6
Q ss_pred cccccchhhccccc-ccccccCC
Q 009351 206 TSWEDKCACLLLDS-AEMWSFND 227 (537)
Q Consensus 206 ~s~~~Kcs~LL~Ds-~~~Wsfn~ 227 (537)
-.|+..|++.|+=+ ...|..-+
T Consensus 255 ~d~~re~~f~l~~~~~~~Y~v~~ 277 (315)
T 2ve7_A 255 KNPESPFMFSLHLNEARDYEVSD 277 (315)
T ss_dssp -CCCCCC----------------
T ss_pred CCCCceEEEEEEecCCCceEEEe
Confidence 45778888888776 55555553
No 84
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.44 E-value=72 Score=24.32 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHH
Q 009351 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (537)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~k 188 (537)
.++.+++.........|..|..++..+.+++..+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556667777777777666654433
No 85
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.03 E-value=1.6e+02 Score=24.45 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhHHHHHhhhhh---hHHH-HHHhHHhHHHHHHhhh
Q 009351 236 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKKII 277 (537)
Q Consensus 236 aLEeE~e~lr~si~~LQskLR~---GLeI-enhLkk~vr~Lekkqi 277 (537)
.||+-++.|.++++.||.++.= .++- ...||.++-.||++-.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788899999999999987642 1221 2237778877777543
No 86
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=23.95 E-value=1.9e+02 Score=27.39 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--chHHH----------------hhHHHHHhhhhhHHHHHHHHHHH
Q 009351 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-P--SYLAV----------------ATRMHFQRTAGLEQEIEILKQKI 71 (537)
Q Consensus 11 ~~e~l~~RI~qLe~ERdELrKDIEqLCMQQaG-p--gyl~v----------------ATRM~~qRta~LEQeiE~Lkkkl 71 (537)
..+.|..++...-..-....+.|-+||..++| | .|+.. +.++|+.....+..+|..++.+|
T Consensus 156 ~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~~~~~~i~~~q~kl 235 (339)
T 1sig_A 156 QFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKL 235 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHTTTCSSGGGTHHHHTTCSHHHHHGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCcHHHHHHHhhccchHHHHHHHhHHHHHHHHHHH
Confidence 35667777777777778888999999998888 2 33332 34578888888888888888887
Q ss_pred HHhhhh
Q 009351 72 AACARE 77 (537)
Q Consensus 72 ~~c~re 77 (537)
...-.+
T Consensus 236 ~~ie~~ 241 (339)
T 1sig_A 236 QQIEEE 241 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765433
No 87
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=23.62 E-value=3.1e+02 Score=22.54 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhH
Q 009351 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (537)
Q Consensus 133 EaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e 184 (537)
|++.|.++-+..-+++...+.|.......+...++-+..|+.++....++..
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555777777777777777777666666677777766666555
No 88
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.61 E-value=77 Score=24.16 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh
Q 009351 233 YISALEDELEKTRSSVENLQSKLRM 257 (537)
Q Consensus 233 yisaLEeE~e~lr~si~~LQskLR~ 257 (537)
-++|||.|+..|..+++-|.++|..
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999888764
No 89
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=23.21 E-value=84 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=15.8
Q ss_pred ccccccchhhcccccccccccCCcchH
Q 009351 205 ETSWEDKCACLLLDSAEMWSFNDTSTS 231 (537)
Q Consensus 205 ~~s~~~Kcs~LL~Ds~~~Wsfn~tSts 231 (537)
.+..+.=.-.+-+.+.++|+|+|.+.+
T Consensus 33 g~~~~~v~V~i~e~~~~~w~~gG~~~~ 59 (64)
T 3abf_A 33 GEPYEEVRVILYEVRRDQWAAGGVLFS 59 (64)
T ss_dssp TCCGGGEEEEEEEECGGGEEETTEEHH
T ss_pred CCCcccEEEEEEEcCHHHeeECCEEhH
Confidence 344333333344556679999998544
No 90
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=23.07 E-value=43 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHh
Q 009351 229 STSKYISALEDELEKTRSSVENLQS 253 (537)
Q Consensus 229 StskyisaLEeE~e~lr~si~~LQs 253 (537)
....||+.||++++.|...|..|.+
T Consensus 46 ~~~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 46 YKRARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999998877654
No 91
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=23.02 E-value=5.2e+02 Score=24.96 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=38.4
Q ss_pred HHHHHHhHHHHHhhhhh----h-HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhHHHH
Q 009351 241 LEKTRSSVENLQSKLRM----G-LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVH 300 (537)
Q Consensus 241 ~e~lr~si~~LQskLR~----G-LeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~ 300 (537)
+.+-.....++|-|+|- | =.+--.|.+.+..+..++..++.|+.+|+.+. ....|.+
T Consensus 140 lkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~~~~r~A---L~EERrR 201 (253)
T 2d1l_A 140 IKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKA---LIEERGR 201 (253)
T ss_dssp HHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33334556788988887 2 34445577777788888889999999887643 3444444
No 92
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.48 E-value=1.9e+02 Score=24.18 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHH
Q 009351 148 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (537)
Q Consensus 148 ~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~k 188 (537)
-.+++.|+.+|++. |..|...+..++.+...+..
T Consensus 38 ~~e~~~r~~~Le~E-------N~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 38 NLETQHKVLELTAE-------NERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666554 45555555555555553333
No 93
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.89 E-value=2.8e+02 Score=23.65 Aligned_cols=32 Identities=34% Similarity=0.397 Sum_probs=23.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 009351 51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (537)
Q Consensus 51 RM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAY 89 (537)
|.+.+|.-+.|+|++.|+.++ ..|+..|..++
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~-------~el~~~l~~~~ 38 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKV-------LELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHH
Confidence 678899999999999999865 34555554443
No 94
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.88 E-value=1.9e+02 Score=23.65 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHH
Q 009351 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (537)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~ 179 (537)
++..+++.|+.+|+..+..++..-..|..++..+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777665555554444444444443
No 95
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.79 E-value=4.3e+02 Score=23.61 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH----------hHhhhHHHHHHhhH
Q 009351 143 LMSQKFNEFQTRLEELSSENIELKKQNA----------TLRFDLEKQEELNE 184 (537)
Q Consensus 143 ~m~qk~~~~~~R~~E~~s~~~~qk~~n~----------aLQ~dl~~~~eq~e 184 (537)
..-+++++.+..+.+|++.+.+++..+. .+|.+|..-++..+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe 61 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLS 61 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3457888999999999888888777654 26666666555555
No 96
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.64 E-value=2.6e+02 Score=28.60 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009351 14 ALMARIQQLEHERDELRKDIEQL 36 (537)
Q Consensus 14 ~l~~RI~qLe~ERdELrKDIEqL 36 (537)
.+..++.+|+++|+++.|.|-++
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777778888888888764
No 97
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=21.61 E-value=1.8e+02 Score=29.70 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccchhhccccccccc
Q 009351 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW 223 (537)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~W 223 (537)
|..++..+..|..+++..+.+-.=.+| +.....+....-.+..+++.|-+++...-+..++ .-|+.|+
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d--~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~------~el~~D~---- 68 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKD--KGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQA------ESLLDDP---- 68 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTSTTCH----
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCH----
Confidence 345677777888888776643211111 1111122222222346667766666543322111 0011122
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 009351 224 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG 258 (537)
Q Consensus 224 sfn~tStskyisaLEeE~e~lr~si~~LQskLR~G 258 (537)
...+-.++|+..+...++.|..+|+.-
T Consensus 69 --------e~~~~a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 69 --------ELKEMAKAEREALLARKEALEKELERH 95 (354)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 245667888999999999988877753
No 98
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=21.20 E-value=5e+02 Score=25.08 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=15.7
Q ss_pred HHHHHHhHHhHHHHHHhhhh
Q 009351 259 LEIENHLKKSVRELEKKIIH 278 (537)
Q Consensus 259 LeIenhLkk~vr~Lekkqi~ 278 (537)
--|.+-|++-+|..+|-.-|
T Consensus 127 ~~vl~aLk~yirae~KDR~H 146 (219)
T 3pmr_A 127 ERVLLALRRYLRAEQKEQRH 146 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46777789999999987644
No 99
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.92 E-value=93 Score=22.62 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhHhHhhhH
Q 009351 155 LEELSSENIELKKQNATLRFDL 176 (537)
Q Consensus 155 ~~E~~s~~~~qk~~n~aLQ~dl 176 (537)
....+++++++|++|..|....
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 3456778888888887776554
No 100
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.87 E-value=1.4e+02 Score=22.77 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 009351 420 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 453 (537)
Q Consensus 420 ~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~ 453 (537)
.+.+|+......+.+.-..-.++..|+.+...|+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999989999989999999999888776
No 101
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=20.86 E-value=4.4e+02 Score=23.33 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009351 11 ESEALMARIQQLEHERDELRKDIEQLCMQQ 40 (537)
Q Consensus 11 ~~e~l~~RI~qLe~ERdELrKDIEqLCMQQ 40 (537)
.+..+..+|.+.+.+-|.|..+|+..|+.-
T Consensus 37 ~d~~~a~~V~~~d~~iD~l~~~I~~~~~~l 66 (235)
T 1sum_B 37 RNESLAREVIADEEVVDQMEVEIQEKAMEV 66 (235)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999999743
No 102
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.69 E-value=2.5e+02 Score=23.99 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhhH
Q 009351 156 EELSSENIELKKQNATLRFDLEKQEELNE 184 (537)
Q Consensus 156 ~E~~s~~~~qk~~n~aLQ~dl~~~~eq~e 184 (537)
+|+.......++.++.||-....+..+-.
T Consensus 9 eElr~Fa~~L~~F~d~Lq~~~~~L~~~f~ 37 (94)
T 3fx7_A 9 EEVREFVGHLERFKELLREEVNSLSNHFH 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777778888888887777655444
No 103
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.50 E-value=3.3e+02 Score=21.79 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 009351 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73 (537)
Q Consensus 16 ~~RI~qLe~ERdELrKDIEqLCMQQaGpgyl~vATRM~~qRta~LEQeiE~Lkkkl~~ 73 (537)
.+.+.+|+.+-..|...|..|=-+=|-|+|.+- -+.+++.|-++++.++..|..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~----d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQ----PHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC----CHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666678886321 123444444445444444433
No 104
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.23 E-value=81 Score=23.98 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 009351 234 ISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 234 isaLEeE~e~lr~si~~LQskL 255 (537)
++.|+.||..|+..++.|+..+
T Consensus 31 v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666676666543
No 105
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=20.17 E-value=5.8e+02 Score=24.41 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=23.3
Q ss_pred hcCCchHHHhh--HHHHHhhhhhHHHHHHHHH
Q 009351 40 QAGPSYLAVAT--RMHFQRTAGLEQEIEILKQ 69 (537)
Q Consensus 40 QaGpgyl~vAT--RM~~qRta~LEQeiE~Lkk 69 (537)
-+|-||-.||. |-++.||..-=++|..+=.
T Consensus 178 E~GrGFAVVAdEVRkLAe~t~~at~~I~~~i~ 209 (341)
T 3zx6_A 178 EQGRGFAVVAGEVRNLAQRSAQAAREIKSLIE 209 (341)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789988885 7789998888888876644
No 106
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.12 E-value=1e+02 Score=25.99 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009351 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGP 43 (537)
Q Consensus 12 ~e~l~~RI~qLe~ERdELrKDIEqLCMQQaGp 43 (537)
.++|.++|..|+.+++.|.+.|.++=-+=+.|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999999999986555444
Done!