Query 009351
Match_columns 537
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 03:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009351.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009351hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 64.9 4.9 0.00036 28.9 5.0 51 191-255 6-56 (61)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 58.7 8.6 0.00062 28.9 5.6 55 189-255 21-75 (88)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 54.7 10 0.00072 29.5 5.5 77 12-88 17-105 (107)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 54.3 8.7 0.00063 28.6 4.9 51 191-255 23-73 (80)
5 d1nlwa_ a.38.1.1 (A:) Mad prot 46.5 14 0.00099 27.2 4.9 52 191-254 18-69 (79)
6 d1nkpb_ a.38.1.1 (B:) Max prot 37.4 30 0.0022 25.5 5.6 52 189-253 17-68 (83)
7 d1vcsa1 a.47.2.1 (A:8-96) Vesi 27.5 1.2E+02 0.0088 23.0 8.2 42 125-166 27-80 (89)
8 d1wu9a1 a.245.1.1 (A:191-249) 24.8 72 0.0052 23.4 5.7 31 11-41 9-42 (59)
9 d1qvra2 c.37.1.20 (A:149-535) 23.9 2E+02 0.014 26.4 10.1 45 54-98 281-325 (387)
10 d1seta1 a.2.7.1 (A:1-110) Sery 22.4 47 0.0034 25.3 4.5 19 15-33 40-58 (110)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.94 E-value=4.9 Score=28.92 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 009351 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQskL 255 (537)
++|-.+|.-.|-| .+-.+|+++|- .+-.||..|+.++..|......|++..
T Consensus 6 ~~f~~L~~lvP~~--~~K~~Ka~iL~------------~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 6 DKIIELKDLVMGT--DAKMHKSGVLR------------KAIDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHSCS--SCCCCTTTHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCC--CCcccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888766644 12335666552 256799999999999998888876643
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.70 E-value=8.6 Score=28.92 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 009351 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQskL 255 (537)
+=+.|.++|.-.|.+.+.+--.|.++|- .+.+||..|++++..+...++.|+...
T Consensus 21 in~~f~~Lr~llP~~~~~~k~sK~~iL~------------~A~~yI~~L~~~~~~l~~~~~~l~~~~ 75 (88)
T d1nkpa_ 21 LKRSFFALRDQIPELENNEKAPKVVILK------------KATAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHTTCGGGTTCTTCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCccCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888777653333334555552 367899999999998888777776544
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=54.65 E-value=10 Score=29.49 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchHH----HhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 009351 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (537)
Q Consensus 12 ~e~l~~RI~qLe~ERdELrKDIEqL--------CMQQaGpgyl~----vATRM~~qRta~LEQeiE~Lkkkl~~c~ren~ 79 (537)
...+.+++++|+.+..|...=++.| |.-..||-+|. -+--.+..|...|+.+|++|.+++..+-.+=.
T Consensus 17 l~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 17 AQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888777766544443 66677877653 34556778889999999999998888777766
Q ss_pred chHHHHHHH
Q 009351 80 NLQEELSEA 88 (537)
Q Consensus 80 nLQEELsEA 88 (537)
.++..+.++
T Consensus 97 ~~~~~l~~~ 105 (107)
T d1fxka_ 97 EMQVNIQEA 105 (107)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 676666554
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.28 E-value=8.7 Score=28.63 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=34.5
Q ss_pred HHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 009351 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (537)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQskL 255 (537)
+.|.++|.-.|.| .+-.+|++||- .+-.||..|+++++.|......|+..+
T Consensus 23 ~~~~~L~~llP~~--~~k~~K~~iL~------------~a~~yI~~L~~~~~~L~~e~~~lk~~~ 73 (80)
T d1am9a_ 23 DKIIELKDLVVGT--EAKLNKSAVLR------------KAIDYIRFLQHSNQKLKQENLSLRTAV 73 (80)
T ss_dssp HHHHHHHHHHTCS--SCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC--CCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777655543 12234666552 366799999999999998888776544
No 5
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.52 E-value=14 Score=27.23 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 009351 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (537)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQsk 254 (537)
..|.++|.-.|.+.+..-..|.++|- .+-.||..|+.++..+...++.|+..
T Consensus 18 ~~f~~L~~llP~~~~~~k~sK~~iL~------------~A~~yI~~L~~~~~~l~~~~~~L~~~ 69 (79)
T d1nlwa_ 18 LSLEKLKGLVPLGPDSSRHTTLSLLT------------KAKLHIKKLEDSDRKAVHQIDQLQRE 69 (79)
T ss_dssp HHHHHHHHSSCCCSSSCCCTTHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCCCCCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777887666554333345555552 35679999999988888877777654
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.44 E-value=30 Score=25.47 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhhhhhhccccccchhhcccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 009351 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (537)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~Wsfn~tStskyisaLEeE~e~lr~si~~LQs 253 (537)
+=+.|.++|.--|.+.+. --.|.+||- .+..||..|++++..+...+..|+.
T Consensus 17 in~~f~~L~~llP~~~~~-k~sK~~iL~------------~A~~yI~~L~~~~~~l~~~~~~l~~ 68 (83)
T d1nkpb_ 17 IKDSFHSLRDSVPSLQGE-KASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHTTSGGGTTS-CCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCC-CCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677888866655322 224555552 3678999988888777766665544
No 7
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.52 E-value=1.2e+02 Score=22.98 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=33.9
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 009351 125 AERDNSVMEAEKAKEKEELMSQKF------------NEFQTRLEELSSENIELK 166 (537)
Q Consensus 125 AERD~slmEaEkaKE~Ee~m~qk~------------~~~~~R~~E~~s~~~~qk 166 (537)
.+|...|-++|+.-+-.+.++.+. ..+..|++.|.+++...|
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk 80 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE 80 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999888888877776 468889999988886655
No 8
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.81 E-value=72 Score=23.39 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHH---HHHHHHHHHHhhc
Q 009351 11 ESEALMARIQQLEHERDE---LRKDIEQLCMQQA 41 (537)
Q Consensus 11 ~~e~l~~RI~qLe~ERdE---LrKDIEqLCMQQa 41 (537)
....|..-|+.||+|||= ==.|||-||-..-
T Consensus 9 ei~elk~~v~~lEkERdFYF~KLRdIEilcQ~~e 42 (59)
T d1wu9a1 9 QVNVLKLTVEDLEKERDFYFGKLRNIELICQENE 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 355677778889999983 2249999997543
No 9
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=23.87 E-value=2e+02 Score=26.41 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 009351 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (537)
Q Consensus 54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQEELsEAYRiK~qLadL 98 (537)
..|-..++.++..+++++......-.....-+.+...+|.+|.++
T Consensus 281 ~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~l 325 (387)
T d1qvra2 281 QERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEV 325 (387)
T ss_dssp HSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999988888777777777777778888888766
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=22.42 E-value=47 Score=25.31 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009351 15 LMARIQQLEHERDELRKDI 33 (537)
Q Consensus 15 l~~RI~qLe~ERdELrKDI 33 (537)
+..++++|.++|+++-|.|
T Consensus 40 l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 40 LKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544
Done!