Query 009352
Match_columns 537
No_of_seqs 265 out of 1430
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 12:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2543 Origin recognition com 100.0 1.8E-86 3.9E-91 660.7 29.0 429 55-534 3-437 (438)
2 PF14630 ORC5_C: Origin recogn 100.0 2.3E-61 5E-66 484.4 20.3 259 250-533 1-271 (271)
3 COG1474 CDC6 Cdc6-related prot 99.9 4.2E-25 9.1E-30 229.5 16.1 196 48-278 7-212 (366)
4 PTZ00112 origin recognition co 99.9 7.3E-23 1.6E-27 224.1 17.3 200 51-283 748-966 (1164)
5 PRK00411 cdc6 cell division co 99.9 9.6E-22 2.1E-26 208.3 20.0 227 43-300 14-256 (394)
6 TIGR02928 orc1/cdc6 family rep 99.9 9.9E-22 2.2E-26 206.0 18.7 226 48-303 5-251 (365)
7 KOG1514 Origin recognition com 99.8 2.8E-20 6E-25 199.0 13.5 215 51-300 389-625 (767)
8 KOG2227 Pre-initiation complex 99.8 1.2E-19 2.7E-24 186.5 13.9 210 56-300 148-373 (529)
9 PRK03992 proteasome-activating 99.3 2E-10 4.3E-15 121.5 19.1 161 56-266 129-313 (389)
10 COG1222 RPT1 ATP-dependent 26S 99.2 1.3E-10 2.9E-15 117.0 15.0 161 57-266 150-333 (406)
11 PRK00080 ruvB Holliday junctio 99.2 1.8E-10 3.9E-15 119.3 14.9 172 57-290 24-217 (328)
12 PF01637 Arch_ATPase: Archaeal 99.2 8.7E-11 1.9E-15 114.3 11.8 183 60-266 1-202 (234)
13 PF13401 AAA_22: AAA domain; P 99.2 8.3E-11 1.8E-15 104.5 10.6 115 81-234 4-126 (131)
14 PRK04195 replication factor C 99.2 2.6E-10 5.7E-15 124.1 15.7 187 58-297 14-205 (482)
15 TIGR00635 ruvB Holliday juncti 99.2 2.4E-10 5.3E-15 116.9 14.4 170 58-292 4-198 (305)
16 COG2256 MGS1 ATPase related to 99.2 3.2E-10 6.9E-15 116.0 14.9 181 45-291 15-208 (436)
17 PF05496 RuvB_N: Holliday junc 99.2 1.3E-10 2.7E-15 111.7 10.9 155 47-267 17-191 (233)
18 PRK14956 DNA polymerase III su 99.2 1.4E-10 3E-15 123.6 12.1 196 59-295 19-223 (484)
19 PLN03025 replication factor C 99.2 5.6E-10 1.2E-14 115.2 16.4 187 49-296 8-202 (319)
20 PTZ00361 26 proteosome regulat 99.2 2.2E-10 4.8E-15 121.9 13.4 160 58-267 183-366 (438)
21 PRK12402 replication factor C 99.2 5.5E-10 1.2E-14 115.7 16.1 212 49-300 10-228 (337)
22 TIGR03015 pepcterm_ATPase puta 99.2 1.2E-09 2.7E-14 109.4 17.9 188 81-305 43-245 (269)
23 PF00004 AAA: ATPase family as 99.1 1.5E-10 3.2E-15 102.7 8.7 103 84-233 1-111 (132)
24 PF13191 AAA_16: AAA ATPase do 99.1 4.4E-11 9.6E-16 112.5 5.5 75 59-133 1-84 (185)
25 TIGR03689 pup_AAA proteasome A 99.1 7.2E-10 1.6E-14 119.7 15.0 165 58-266 182-376 (512)
26 TIGR01242 26Sp45 26S proteasom 99.1 9.9E-10 2.1E-14 115.4 15.8 161 56-266 120-304 (364)
27 PRK07003 DNA polymerase III su 99.1 4.6E-10 1E-14 124.1 12.9 194 58-292 16-217 (830)
28 TIGR02881 spore_V_K stage V sp 99.1 1.4E-09 3E-14 109.0 15.0 132 82-265 43-188 (261)
29 TIGR02880 cbbX_cfxQ probable R 99.1 1.5E-09 3.2E-14 110.1 14.5 132 82-265 59-205 (284)
30 PRK00440 rfc replication facto 99.1 2.5E-09 5.4E-14 109.8 16.4 175 59-291 18-199 (319)
31 CHL00181 cbbX CbbX; Provisiona 99.1 1.1E-09 2.5E-14 110.9 13.5 134 81-266 59-207 (287)
32 PTZ00454 26S protease regulato 99.1 3E-09 6.6E-14 112.4 17.0 160 57-266 144-327 (398)
33 KOG0989 Replication factor C, 99.1 6.2E-10 1.3E-14 110.1 10.8 191 59-297 37-233 (346)
34 PRK14961 DNA polymerase III su 99.1 6E-10 1.3E-14 116.9 11.3 195 59-291 17-216 (363)
35 PRK14962 DNA polymerase III su 99.0 1.6E-09 3.4E-14 116.9 12.9 200 48-291 8-214 (472)
36 PLN00020 ribulose bisphosphate 99.0 1.1E-08 2.4E-13 104.9 16.8 189 54-288 115-331 (413)
37 PRK14949 DNA polymerase III su 99.0 2.8E-09 6E-14 120.1 13.4 196 59-295 17-220 (944)
38 PRK13342 recombination factor 99.0 5.1E-09 1.1E-13 111.8 15.0 153 48-266 6-162 (413)
39 cd00009 AAA The AAA+ (ATPases 99.0 6.9E-09 1.5E-13 92.5 13.3 57 61-119 1-60 (151)
40 KOG0733 Nuclear AAA ATPase (VC 99.0 4.3E-09 9.2E-14 112.2 12.6 160 57-265 189-374 (802)
41 PRK07994 DNA polymerase III su 99.0 3.4E-09 7.4E-14 117.3 12.4 168 58-266 16-189 (647)
42 PRK08691 DNA polymerase III su 99.0 3.4E-09 7.4E-14 117.1 12.1 193 58-291 16-216 (709)
43 PRK13341 recombination factor 99.0 7.5E-09 1.6E-13 116.7 15.1 63 47-115 21-86 (725)
44 CHL00176 ftsH cell division pr 99.0 8.6E-09 1.9E-13 114.8 14.8 159 58-266 183-364 (638)
45 PRK14960 DNA polymerase III su 99.0 5.8E-09 1.2E-13 114.4 13.0 190 58-291 15-215 (702)
46 PRK12323 DNA polymerase III su 98.9 4E-09 8.7E-14 115.4 11.1 195 58-295 16-225 (700)
47 TIGR02639 ClpA ATP-dependent C 98.9 8.1E-09 1.8E-13 117.8 13.8 154 58-266 182-356 (731)
48 PF00931 NB-ARC: NB-ARC domain 98.9 7.7E-09 1.7E-13 104.6 12.2 164 63-267 1-169 (287)
49 TIGR00602 rad24 checkpoint pro 98.9 5.7E-09 1.2E-13 115.6 11.9 212 58-300 84-329 (637)
50 TIGR01241 FtsH_fam ATP-depende 98.9 1.6E-08 3.5E-13 110.5 15.3 135 82-266 89-236 (495)
51 PRK06645 DNA polymerase III su 98.9 1.4E-08 3.1E-13 110.1 14.5 207 49-298 16-233 (507)
52 TIGR01243 CDC48 AAA family ATP 98.9 2.4E-08 5.2E-13 114.2 17.1 159 59-266 454-633 (733)
53 PRK14958 DNA polymerase III su 98.9 9.3E-09 2E-13 112.1 12.9 189 59-291 17-216 (509)
54 COG1223 Predicted ATPase (AAA+ 98.9 3.9E-09 8.5E-14 102.1 7.9 150 68-266 134-295 (368)
55 TIGR00763 lon ATP-dependent pr 98.9 4.4E-08 9.6E-13 112.5 17.5 164 57-266 319-503 (775)
56 PTZ00202 tuzin; Provisional 98.9 2.9E-07 6.2E-12 96.3 21.4 208 57-328 261-478 (550)
57 PRK14952 DNA polymerase III su 98.9 3.4E-08 7.3E-13 108.9 15.6 193 58-291 13-215 (584)
58 KOG0730 AAA+-type ATPase [Post 98.9 2.1E-08 4.5E-13 108.3 13.4 176 80-305 467-654 (693)
59 COG0466 Lon ATP-dependent Lon 98.9 2.4E-08 5.2E-13 108.7 14.0 212 58-315 323-566 (782)
60 PRK14959 DNA polymerase III su 98.9 8.2E-09 1.8E-13 113.5 10.6 198 48-291 10-216 (624)
61 PRK14951 DNA polymerase III su 98.9 2.5E-08 5.4E-13 110.3 14.4 189 59-291 17-221 (618)
62 TIGR00362 DnaA chromosomal rep 98.9 2.6E-08 5.7E-13 106.2 14.2 165 81-302 136-314 (405)
63 PRK14963 DNA polymerase III su 98.9 2.4E-08 5.1E-13 108.7 13.9 199 49-291 9-213 (504)
64 TIGR02640 gas_vesic_GvpN gas v 98.9 3.9E-08 8.4E-13 98.6 14.2 44 81-124 21-64 (262)
65 PRK05563 DNA polymerase III su 98.9 2.6E-08 5.6E-13 110.0 14.0 168 58-266 16-189 (559)
66 PHA02544 44 clamp loader, smal 98.9 3.6E-08 7.9E-13 101.4 14.2 149 58-265 21-170 (316)
67 TIGR01243 CDC48 AAA family ATP 98.8 3.7E-08 7.9E-13 112.7 15.5 159 58-266 178-357 (733)
68 PRK14957 DNA polymerase III su 98.8 2E-08 4.3E-13 109.7 12.6 190 59-291 17-216 (546)
69 PRK09112 DNA polymerase III su 98.8 2.6E-08 5.6E-13 103.7 12.9 200 58-290 23-235 (351)
70 PRK09111 DNA polymerase III su 98.8 2.5E-08 5.4E-13 110.4 13.1 196 58-291 24-229 (598)
71 TIGR03420 DnaA_homol_Hda DnaA 98.8 4E-08 8.7E-13 95.9 12.7 173 62-302 21-205 (226)
72 KOG0742 AAA+-type ATPase [Post 98.8 1.5E-08 3.3E-13 103.4 9.7 152 63-265 363-525 (630)
73 PRK14964 DNA polymerase III su 98.8 3.4E-08 7.5E-13 106.4 12.9 193 59-291 14-213 (491)
74 PRK07764 DNA polymerase III su 98.8 2.5E-08 5.4E-13 113.9 12.2 196 59-290 16-216 (824)
75 TIGR02397 dnaX_nterm DNA polym 98.8 1.5E-08 3.3E-13 105.8 9.6 202 58-302 14-222 (355)
76 PF05621 TniB: Bacterial TniB 98.8 1.3E-07 2.8E-12 95.0 15.6 215 58-319 34-279 (302)
77 PRK05896 DNA polymerase III su 98.8 3.5E-08 7.5E-13 108.1 11.7 170 59-266 17-189 (605)
78 PRK00149 dnaA chromosomal repl 98.8 5.7E-08 1.2E-12 105.0 13.3 165 81-302 148-326 (450)
79 PRK14969 DNA polymerase III su 98.8 4.4E-08 9.5E-13 107.4 12.2 193 59-291 17-216 (527)
80 KOG2004 Mitochondrial ATP-depe 98.8 5E-08 1.1E-12 105.9 12.0 210 58-313 411-652 (906)
81 TIGR03345 VI_ClpV1 type VI sec 98.8 7.7E-08 1.7E-12 111.0 14.5 183 58-288 187-389 (852)
82 PRK08727 hypothetical protein; 98.8 1.5E-07 3.2E-12 92.8 14.4 158 82-303 42-209 (233)
83 PRK14087 dnaA chromosomal repl 98.8 6.3E-08 1.4E-12 104.3 12.7 172 81-303 141-324 (450)
84 CHL00195 ycf46 Ycf46; Provisio 98.8 1.5E-07 3.3E-12 101.8 15.5 134 82-266 260-403 (489)
85 PF00308 Bac_DnaA: Bacterial d 98.8 4.1E-08 9E-13 95.8 10.2 164 81-302 34-212 (219)
86 KOG0728 26S proteasome regulat 98.7 2.1E-07 4.6E-12 89.7 14.4 160 57-265 146-328 (404)
87 PRK14086 dnaA chromosomal repl 98.7 2.6E-07 5.7E-12 101.4 17.0 168 81-302 314-492 (617)
88 TIGR02902 spore_lonB ATP-depen 98.7 6.2E-08 1.3E-12 106.5 12.0 56 59-116 66-131 (531)
89 CHL00095 clpC Clp protease ATP 98.7 6.4E-08 1.4E-12 111.8 12.5 159 58-266 179-352 (821)
90 PRK08451 DNA polymerase III su 98.7 1.5E-07 3.3E-12 102.3 14.4 201 49-291 9-214 (535)
91 PF14516 AAA_35: AAA-like doma 98.7 6.9E-07 1.5E-11 92.6 18.8 216 60-304 13-245 (331)
92 KOG0733 Nuclear AAA ATPase (VC 98.7 1.6E-07 3.4E-12 100.4 14.0 167 83-299 547-729 (802)
93 PRK14965 DNA polymerase III su 98.7 7.1E-08 1.5E-12 107.0 11.9 168 58-265 16-188 (576)
94 TIGR00678 holB DNA polymerase 98.7 2.3E-07 5.1E-12 88.1 13.9 176 69-285 3-181 (188)
95 PRK10787 DNA-binding ATP-depen 98.7 2.1E-07 4.7E-12 106.2 15.9 164 58-267 322-505 (784)
96 PRK14088 dnaA chromosomal repl 98.7 1.5E-07 3.2E-12 101.3 13.4 166 81-302 130-309 (440)
97 PRK07133 DNA polymerase III su 98.7 2.2E-07 4.8E-12 103.8 15.1 165 58-266 18-188 (725)
98 KOG0991 Replication factor C, 98.7 7.2E-08 1.6E-12 92.1 9.4 154 57-265 26-182 (333)
99 COG0464 SpoVK ATPases of the A 98.7 1.3E-07 2.9E-12 103.4 12.8 137 82-267 277-422 (494)
100 KOG2028 ATPase related to the 98.7 4.3E-07 9.4E-12 91.9 14.9 178 60-299 140-341 (554)
101 PRK14955 DNA polymerase III su 98.7 7.1E-08 1.5E-12 102.5 9.7 201 58-301 16-231 (397)
102 PRK07940 DNA polymerase III su 98.7 2.6E-07 5.6E-12 97.6 13.8 175 57-266 4-187 (394)
103 KOG0734 AAA+-type ATPase conta 98.6 2.4E-07 5.1E-12 97.7 12.2 150 65-265 314-481 (752)
104 COG2255 RuvB Holliday junction 98.6 2.8E-07 6.1E-12 90.7 11.9 148 58-267 26-193 (332)
105 PF07693 KAP_NTPase: KAP famil 98.6 3E-06 6.6E-11 87.3 20.3 72 63-134 1-83 (325)
106 PRK14948 DNA polymerase III su 98.6 2.8E-07 6.1E-12 102.7 13.4 171 58-265 16-190 (620)
107 TIGR03346 chaperone_ClpB ATP-d 98.6 3.7E-07 8E-12 105.9 14.7 158 58-266 173-347 (852)
108 PRK11034 clpA ATP-dependent Cl 98.6 1.4E-07 2.9E-12 107.2 10.8 166 57-265 457-663 (758)
109 PRK14970 DNA polymerase III su 98.6 6.8E-07 1.5E-11 94.1 15.4 195 58-302 17-213 (367)
110 TIGR02639 ClpA ATP-dependent C 98.6 3.2E-07 7E-12 104.8 13.9 65 55-119 451-522 (731)
111 COG2812 DnaX DNA polymerase II 98.6 1.8E-07 3.9E-12 100.7 11.1 193 59-292 17-217 (515)
112 PRK10865 protein disaggregatio 98.6 2.5E-07 5.4E-12 107.1 13.0 46 58-105 178-223 (857)
113 KOG0652 26S proteasome regulat 98.6 2.7E-07 5.9E-12 89.4 11.0 161 57-266 170-353 (424)
114 PRK14950 DNA polymerase III su 98.6 1.5E-07 3.4E-12 104.7 10.7 170 59-266 17-190 (585)
115 PRK14953 DNA polymerase III su 98.6 3.9E-07 8.4E-12 98.9 12.8 187 59-286 17-211 (486)
116 KOG0736 Peroxisome assembly fa 98.6 4E-07 8.8E-12 99.7 12.7 95 60-202 674-778 (953)
117 PRK08903 DnaA regulatory inact 98.6 8.2E-07 1.8E-11 86.9 14.0 168 62-302 23-203 (227)
118 PF05729 NACHT: NACHT domain 98.6 6.8E-07 1.5E-11 82.1 12.5 143 83-265 2-160 (166)
119 PRK11034 clpA ATP-dependent Cl 98.6 3.8E-07 8.2E-12 103.6 12.9 164 58-266 186-360 (758)
120 PRK14954 DNA polymerase III su 98.6 4.3E-07 9.3E-12 100.9 13.0 169 58-266 16-197 (620)
121 PRK06647 DNA polymerase III su 98.6 2.6E-07 5.6E-12 101.9 11.2 193 59-291 17-216 (563)
122 PRK06305 DNA polymerase III su 98.6 1.3E-06 2.7E-11 94.3 16.2 201 58-302 17-226 (451)
123 KOG0744 AAA+-type ATPase [Post 98.6 6.9E-08 1.5E-12 96.2 5.9 136 83-265 179-337 (423)
124 PRK12422 chromosomal replicati 98.6 6.2E-07 1.3E-11 96.4 13.2 166 81-302 141-317 (445)
125 KOG0727 26S proteasome regulat 98.5 7.5E-07 1.6E-11 86.1 11.9 137 79-264 187-335 (408)
126 KOG2035 Replication factor C, 98.5 1.8E-06 3.9E-11 84.7 14.5 209 59-301 14-235 (351)
127 KOG1969 DNA replication checkp 98.5 1.4E-06 3E-11 95.2 15.1 167 84-302 329-518 (877)
128 TIGR01650 PD_CobS cobaltochela 98.5 7.3E-07 1.6E-11 91.1 11.5 61 59-123 46-106 (327)
129 PRK08084 DNA replication initi 98.5 5.8E-07 1.3E-11 88.7 10.4 170 66-302 32-213 (235)
130 PRK10733 hflB ATP-dependent me 98.5 1.1E-06 2.4E-11 98.8 13.9 160 58-267 152-334 (644)
131 KOG0738 AAA+-type ATPase [Post 98.5 3.6E-07 7.9E-12 93.2 8.5 35 82-116 246-280 (491)
132 PRK06893 DNA replication initi 98.5 8.9E-07 1.9E-11 87.0 10.4 156 81-303 39-208 (229)
133 PRK07471 DNA polymerase III su 98.5 1.3E-06 2.8E-11 91.5 12.2 177 58-267 19-212 (365)
134 TIGR03346 chaperone_ClpB ATP-d 98.5 3.9E-06 8.5E-11 97.5 17.3 65 55-119 562-636 (852)
135 PRK05342 clpX ATP-dependent pr 98.5 4.4E-06 9.5E-11 88.8 16.2 59 58-116 71-143 (412)
136 PRK11331 5-methylcytosine-spec 98.5 5.5E-06 1.2E-10 87.9 16.7 51 52-106 169-219 (459)
137 TIGR00390 hslU ATP-dependent p 98.5 9.9E-06 2.1E-10 85.1 18.3 64 54-117 8-83 (441)
138 KOG2228 Origin recognition com 98.4 2.5E-06 5.5E-11 85.8 13.1 181 60-265 26-216 (408)
139 PRK13531 regulatory ATPase Rav 98.4 1.2E-06 2.7E-11 93.5 11.2 67 53-124 15-83 (498)
140 CHL00206 ycf2 Ycf2; Provisiona 98.4 1.6E-06 3.4E-11 103.6 12.9 36 82-117 1631-1666(2281)
141 PF00158 Sigma54_activat: Sigm 98.4 1.1E-06 2.4E-11 82.1 9.5 71 61-136 2-75 (168)
142 PF13173 AAA_14: AAA domain 98.4 2E-06 4.4E-11 76.5 10.3 35 82-116 3-39 (128)
143 PRK04841 transcriptional regul 98.4 6.4E-06 1.4E-10 96.6 17.2 177 57-265 13-196 (903)
144 PRK05201 hslU ATP-dependent pr 98.4 1.4E-05 2.9E-10 84.2 16.4 64 55-118 12-87 (443)
145 KOG0735 AAA+-type ATPase [Post 98.4 2.7E-06 5.8E-11 92.6 11.4 133 83-265 703-845 (952)
146 PRK14971 DNA polymerase III su 98.3 1.1E-05 2.5E-10 90.0 16.7 167 58-265 17-190 (614)
147 PRK04132 replication factor C 98.3 4E-06 8.7E-11 95.6 12.7 160 84-299 567-736 (846)
148 PF05673 DUF815: Protein of un 98.3 6.6E-06 1.4E-10 80.4 12.3 55 58-112 27-86 (249)
149 KOG0731 AAA+-type ATPase conta 98.3 6.3E-06 1.4E-10 91.8 12.7 152 65-267 321-494 (774)
150 COG0470 HolB ATPase involved i 98.3 1E-05 2.2E-10 83.1 13.6 168 61-264 4-175 (325)
151 CHL00095 clpC Clp protease ATP 98.3 1E-05 2.2E-10 93.8 14.9 65 55-119 506-580 (821)
152 KOG0729 26S proteasome regulat 98.3 1.5E-05 3.3E-10 77.7 13.6 159 57-264 176-357 (435)
153 PRK05642 DNA replication initi 98.3 6.4E-06 1.4E-10 81.2 11.4 159 82-303 46-213 (234)
154 TIGR00382 clpX endopeptidase C 98.3 2.8E-05 6.1E-10 82.4 16.7 60 57-116 76-151 (413)
155 TIGR03345 VI_ClpV1 type VI sec 98.3 5.9E-06 1.3E-10 95.6 12.5 65 55-119 563-637 (852)
156 KOG0726 26S proteasome regulat 98.3 4.8E-06 1E-10 82.2 9.9 163 55-266 182-367 (440)
157 TIGR02903 spore_lon_C ATP-depe 98.3 7E-06 1.5E-10 91.9 12.6 57 59-117 155-221 (615)
158 PRK10865 protein disaggregatio 98.3 5.9E-06 1.3E-10 95.8 12.3 63 56-118 566-638 (857)
159 PHA02244 ATPase-like protein 98.2 7.8E-06 1.7E-10 84.7 11.6 62 53-114 91-152 (383)
160 KOG0741 AAA+-type ATPase [Post 98.2 7E-06 1.5E-10 86.8 10.5 138 82-266 539-684 (744)
161 COG3267 ExeA Type II secretory 98.2 6.2E-05 1.3E-09 73.5 16.3 218 44-299 14-249 (269)
162 PRK08058 DNA polymerase III su 98.2 1.6E-05 3.6E-10 82.3 13.2 172 59-267 6-181 (329)
163 TIGR02974 phageshock_pspF psp 98.2 1.3E-05 2.7E-10 83.1 12.2 58 61-118 2-62 (329)
164 PF10443 RNA12: RNA12 protein; 98.2 8.9E-05 1.9E-09 77.8 18.2 193 63-266 1-227 (431)
165 PRK05707 DNA polymerase III su 98.2 1.6E-05 3.5E-10 82.2 12.7 149 83-266 24-176 (328)
166 KOG0737 AAA+-type ATPase [Post 98.2 4.4E-06 9.6E-11 85.2 7.5 197 58-302 92-310 (386)
167 KOG0730 AAA+-type ATPase [Post 98.2 9.6E-06 2.1E-10 88.1 10.5 134 82-265 219-361 (693)
168 PRK09087 hypothetical protein; 98.1 1.1E-05 2.4E-10 79.0 10.0 102 191-302 90-199 (226)
169 TIGR01817 nifA Nif-specific re 98.1 1.9E-05 4.1E-10 87.4 12.9 59 59-117 197-258 (534)
170 smart00382 AAA ATPases associa 98.1 1.2E-05 2.5E-10 70.6 9.2 38 81-118 2-42 (148)
171 PRK07399 DNA polymerase III su 98.1 3.1E-05 6.8E-10 79.6 13.5 173 58-267 4-194 (314)
172 KOG0741 AAA+-type ATPase [Post 98.1 5.9E-06 1.3E-10 87.3 7.5 109 83-233 258-378 (744)
173 KOG0743 AAA+-type ATPase [Post 98.1 2.3E-05 4.9E-10 82.1 11.3 146 64-266 211-381 (457)
174 PRK05022 anaerobic nitric oxid 98.1 4E-05 8.7E-10 84.2 13.3 60 59-118 188-250 (509)
175 COG2909 MalT ATP-dependent tra 98.1 4.5E-05 9.7E-10 85.2 13.5 178 57-265 18-204 (894)
176 PLN03210 Resistant to P. syrin 98.1 0.0001 2.3E-09 88.6 17.8 51 57-107 183-233 (1153)
177 COG5271 MDN1 AAA ATPase contai 98.1 1.6E-05 3.4E-10 92.7 10.0 159 81-287 888-1063(4600)
178 KOG0990 Replication factor C, 98.1 2E-05 4.3E-10 79.0 9.6 172 45-268 32-203 (360)
179 PRK11608 pspF phage shock prot 98.1 4.3E-05 9.4E-10 79.1 12.6 62 57-118 5-69 (326)
180 COG1221 PspF Transcriptional r 98.0 3.7E-05 8E-10 80.6 11.7 163 57-264 77-257 (403)
181 PRK06871 DNA polymerase III su 98.0 3.8E-05 8.2E-10 79.1 11.4 167 64-266 8-177 (325)
182 PRK07952 DNA replication prote 98.0 3.2E-05 6.9E-10 76.6 10.5 48 66-113 84-134 (244)
183 COG0714 MoxR-like ATPases [Gen 98.0 4.3E-05 9.4E-10 79.2 12.0 63 58-124 24-86 (329)
184 PRK12377 putative replication 98.0 2.6E-05 5.6E-10 77.4 9.7 34 81-114 101-137 (248)
185 KOG0736 Peroxisome assembly fa 98.0 3.8E-05 8.2E-10 84.7 11.6 157 60-265 403-573 (953)
186 PRK05564 DNA polymerase III su 98.0 7.3E-05 1.6E-09 77.0 13.3 158 58-266 4-163 (313)
187 PF13177 DNA_pol3_delta2: DNA 98.0 2.3E-05 5E-10 72.8 8.6 155 64-256 3-162 (162)
188 PRK06620 hypothetical protein; 98.0 2.3E-05 4.9E-10 76.3 8.7 100 190-302 87-193 (214)
189 COG2204 AtoC Response regulato 98.0 7.6E-05 1.7E-09 79.7 13.1 80 57-141 140-222 (464)
190 COG0593 DnaA ATPase involved i 98.0 9.6E-05 2.1E-09 77.8 13.6 163 80-302 112-290 (408)
191 PRK15424 propionate catabolism 98.0 6.9E-05 1.5E-09 82.2 13.1 61 58-118 219-290 (538)
192 PRK08769 DNA polymerase III su 98.0 0.0001 2.2E-09 75.8 13.5 169 64-266 10-183 (319)
193 KOG0739 AAA+-type ATPase [Post 98.0 3.2E-05 7E-10 76.7 9.3 33 82-114 167-199 (439)
194 PRK06090 DNA polymerase III su 97.9 0.00014 2.9E-09 74.9 13.7 169 64-267 9-179 (319)
195 PRK06964 DNA polymerase III su 97.9 4.9E-05 1.1E-09 78.9 10.4 155 83-267 23-203 (342)
196 COG0542 clpA ATP-binding subun 97.9 8.5E-05 1.8E-09 83.5 12.7 121 55-218 488-618 (786)
197 KOG0651 26S proteasome regulat 97.9 6.7E-05 1.5E-09 75.0 10.4 157 58-264 132-312 (388)
198 PF07724 AAA_2: AAA domain (Cd 97.9 2.1E-05 4.5E-10 73.7 6.5 39 81-119 3-45 (171)
199 COG0542 clpA ATP-binding subun 97.9 9.9E-05 2.1E-09 83.0 12.8 157 59-265 171-343 (786)
200 COG0465 HflB ATP-dependent Zn 97.9 9E-05 2E-09 81.2 12.2 157 59-265 151-330 (596)
201 PRK07993 DNA polymerase III su 97.9 6.8E-05 1.5E-09 77.8 10.6 168 64-266 8-178 (334)
202 PRK08116 hypothetical protein; 97.9 8.6E-05 1.9E-09 74.7 10.6 33 82-114 115-150 (268)
203 cd01120 RecA-like_NTPases RecA 97.8 9.5E-05 2.1E-09 67.3 9.5 35 84-118 2-39 (165)
204 PRK08939 primosomal protein Dn 97.8 0.00012 2.7E-09 74.9 11.0 53 62-114 135-192 (306)
205 PF14532 Sigma54_activ_2: Sigm 97.8 2.3E-05 5E-10 70.6 4.9 45 62-106 2-46 (138)
206 KOG0732 AAA+-type ATPase conta 97.8 0.00022 4.8E-09 82.0 13.8 200 58-302 265-488 (1080)
207 PRK10820 DNA-binding transcrip 97.8 0.00016 3.4E-09 79.7 12.2 61 58-118 204-267 (520)
208 PF12775 AAA_7: P-loop contain 97.8 7.9E-05 1.7E-09 75.1 8.8 170 81-308 33-226 (272)
209 PRK08181 transposase; Validate 97.8 0.00014 3E-09 73.1 10.2 34 81-114 106-142 (269)
210 PRK15429 formate hydrogenlyase 97.8 0.00032 6.9E-09 80.0 14.4 60 59-118 377-439 (686)
211 PRK11388 DNA-binding transcrip 97.8 5.5E-05 1.2E-09 85.5 8.1 61 58-118 325-388 (638)
212 PRK06526 transposase; Provisio 97.8 3.5E-05 7.6E-10 76.8 5.7 26 80-105 97-122 (254)
213 KOG0735 AAA+-type ATPase [Post 97.8 0.00015 3.2E-09 79.5 10.6 135 82-265 432-583 (952)
214 PF01695 IstB_IS21: IstB-like 97.7 6.4E-05 1.4E-09 70.9 6.7 48 65-114 33-83 (178)
215 KOG0740 AAA+-type ATPase [Post 97.7 0.00032 7E-09 74.0 12.1 166 81-299 186-367 (428)
216 PF07728 AAA_5: AAA domain (dy 97.7 4.7E-05 1E-09 68.4 4.9 42 83-124 1-42 (139)
217 PF03215 Rad17: Rad17 cell cyc 97.7 0.0007 1.5E-08 74.1 14.8 48 64-111 25-75 (519)
218 PRK08699 DNA polymerase III su 97.7 0.00021 4.6E-09 73.8 9.9 168 64-266 7-183 (325)
219 TIGR02329 propionate_PrpR prop 97.6 0.00015 3.3E-09 79.6 9.0 61 58-118 212-275 (526)
220 PRK06921 hypothetical protein; 97.6 0.0002 4.4E-09 71.9 8.7 34 81-114 117-154 (266)
221 TIGR02237 recomb_radB DNA repa 97.6 0.00063 1.4E-08 65.6 11.5 51 74-125 5-58 (209)
222 PTZ00494 tuzin-like protein; P 97.6 0.0034 7.3E-08 66.1 16.9 193 57-301 370-572 (664)
223 PRK06835 DNA replication prote 97.6 0.00043 9.4E-09 71.6 10.5 35 80-114 182-219 (329)
224 TIGR01818 ntrC nitrogen regula 97.6 0.00095 2.1E-08 72.4 13.6 58 60-117 136-196 (463)
225 KOG0745 Putative ATP-dependent 97.5 0.00017 3.8E-09 74.9 7.0 36 82-117 227-262 (564)
226 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00044 9.5E-09 72.4 10.0 127 68-241 47-175 (362)
227 KOG1970 Checkpoint RAD17-RFC c 97.5 0.00086 1.9E-08 71.8 12.0 54 65-118 89-148 (634)
228 COG2607 Predicted ATPase (AAA+ 97.5 0.0033 7.1E-08 61.1 14.8 49 58-106 60-110 (287)
229 PRK09183 transposase/IS protei 97.5 0.00064 1.4E-08 68.1 10.1 35 80-114 101-138 (259)
230 COG3829 RocR Transcriptional r 97.4 0.0027 5.8E-08 68.4 14.5 80 57-141 244-326 (560)
231 PRK10923 glnG nitrogen regulat 97.4 0.00087 1.9E-08 72.8 11.2 59 59-117 139-200 (469)
232 cd01128 rho_factor Transcripti 97.4 0.00057 1.2E-08 67.9 8.9 48 81-128 16-69 (249)
233 COG1219 ClpX ATP-dependent pro 97.4 0.00021 4.6E-09 71.7 5.4 36 81-116 97-132 (408)
234 cd01394 radB RadB. The archaea 97.4 0.0012 2.7E-08 64.0 10.4 50 69-118 7-59 (218)
235 PF12774 AAA_6: Hydrolytic ATP 97.4 0.0011 2.3E-08 65.2 9.8 50 66-119 21-70 (231)
236 PF06745 KaiC: KaiC; InterPro 97.3 0.0008 1.7E-08 65.7 8.9 136 72-233 10-160 (226)
237 cd01393 recA_like RecA is a b 97.3 0.0028 6E-08 61.7 12.5 51 72-122 10-69 (226)
238 COG1484 DnaC DNA replication p 97.3 0.002 4.3E-08 64.3 11.5 51 63-114 88-141 (254)
239 KOG1968 Replication factor C, 97.3 0.00065 1.4E-08 78.0 8.8 138 84-266 360-500 (871)
240 TIGR02915 PEP_resp_reg putativ 97.3 0.0016 3.5E-08 70.3 11.3 60 59-118 140-202 (445)
241 cd01124 KaiC KaiC is a circadi 97.2 0.0011 2.4E-08 62.3 8.2 41 84-126 2-45 (187)
242 PRK05973 replicative DNA helic 97.2 0.0027 5.9E-08 62.5 10.9 46 80-127 63-111 (237)
243 KOG2170 ATPase of the AAA+ sup 97.2 0.0018 3.8E-08 64.9 9.3 45 61-106 89-135 (344)
244 PRK07276 DNA polymerase III su 97.2 0.0066 1.4E-07 61.6 13.5 163 65-267 9-174 (290)
245 PF13086 AAA_11: AAA domain; P 97.2 0.00065 1.4E-08 65.7 6.1 38 64-105 4-41 (236)
246 PF09848 DUF2075: Uncharacteri 97.2 0.00073 1.6E-08 70.8 6.8 23 83-105 3-25 (352)
247 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.004 8.6E-08 61.0 11.6 52 72-123 10-70 (235)
248 PRK09361 radB DNA repair and r 97.2 0.003 6.4E-08 61.7 10.6 50 70-120 12-64 (225)
249 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0028 6E-08 62.6 10.3 57 68-126 8-67 (237)
250 PRK10536 hypothetical protein; 97.1 0.0036 7.9E-08 62.1 10.8 41 60-104 57-97 (262)
251 PF13604 AAA_30: AAA domain; P 97.1 0.0019 4.2E-08 61.8 8.7 40 64-106 4-43 (196)
252 PF13207 AAA_17: AAA domain; P 97.1 0.00038 8.2E-09 60.7 3.4 27 84-110 2-28 (121)
253 COG1220 HslU ATP-dependent pro 97.1 0.017 3.6E-07 58.9 15.2 112 189-302 251-384 (444)
254 TIGR02012 tigrfam_recA protein 97.1 0.0024 5.1E-08 65.7 9.5 49 72-120 45-97 (321)
255 KOG3347 Predicted nucleotide k 97.1 0.00039 8.4E-09 62.5 3.2 41 81-123 7-47 (176)
256 TIGR02238 recomb_DMC1 meiotic 97.1 0.0041 9E-08 64.0 11.2 61 70-131 85-154 (313)
257 cd00984 DnaB_C DnaB helicase C 97.1 0.0038 8.2E-08 61.5 10.5 54 78-133 10-67 (242)
258 PRK04301 radA DNA repair and r 97.1 0.0061 1.3E-07 62.9 12.4 57 69-125 90-155 (317)
259 cd00046 DEXDc DEAD-like helica 97.1 0.0019 4.1E-08 56.4 7.5 24 83-106 2-25 (144)
260 COG1373 Predicted ATPase (AAA+ 97.1 0.0063 1.4E-07 64.8 12.7 52 59-114 18-70 (398)
261 PRK12608 transcription termina 97.1 0.0021 4.6E-08 67.0 8.7 62 70-132 123-190 (380)
262 PRK11361 acetoacetate metaboli 97.1 0.0031 6.8E-08 68.2 10.5 59 60-118 145-206 (457)
263 TIGR00767 rho transcription te 97.0 0.002 4.3E-08 67.8 8.2 51 80-130 167-223 (415)
264 cd00983 recA RecA is a bacter 97.0 0.0038 8.2E-08 64.3 10.1 49 72-120 45-97 (325)
265 PLN03187 meiotic recombination 97.0 0.0071 1.5E-07 62.9 12.2 61 70-131 115-184 (344)
266 PRK06696 uridine kinase; Valid 97.0 0.0013 2.9E-08 64.2 6.5 59 62-120 2-64 (223)
267 PF04665 Pox_A32: Poxvirus A32 97.0 0.011 2.5E-07 58.1 12.9 33 83-115 15-49 (241)
268 smart00487 DEXDc DEAD-like hel 97.0 0.0038 8.2E-08 58.0 9.3 66 62-131 9-78 (201)
269 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0013 2.7E-08 58.9 5.3 44 64-107 5-48 (133)
270 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0077 1.7E-07 60.3 11.2 46 80-127 35-83 (259)
271 PRK15115 response regulator Gl 96.9 0.0066 1.4E-07 65.5 11.3 58 60-117 136-196 (444)
272 PRK06067 flagellar accessory p 96.9 0.0087 1.9E-07 58.8 11.2 56 69-126 13-71 (234)
273 PF10923 DUF2791: P-loop Domai 96.9 0.02 4.3E-07 60.8 14.4 76 58-133 25-111 (416)
274 PTZ00035 Rad51 protein; Provis 96.9 0.0096 2.1E-07 61.9 11.9 55 69-123 106-169 (337)
275 PRK11823 DNA repair protein Ra 96.9 0.0018 3.9E-08 69.9 6.6 50 67-116 66-118 (446)
276 PRK08533 flagellar accessory p 96.8 0.013 2.9E-07 57.6 11.9 54 72-127 15-71 (230)
277 PRK09354 recA recombinase A; P 96.8 0.0093 2E-07 61.9 11.0 49 72-120 50-102 (349)
278 PRK10875 recD exonuclease V su 96.8 0.0066 1.4E-07 67.9 10.6 49 82-130 168-222 (615)
279 PF06068 TIP49: TIP49 C-termin 96.8 0.0017 3.6E-08 67.2 5.3 66 55-120 21-91 (398)
280 cd01122 GP4d_helicase GP4d_hel 96.8 0.007 1.5E-07 60.7 9.9 52 80-133 29-84 (271)
281 PRK08118 topology modulation p 96.8 0.0025 5.4E-08 59.4 5.9 33 82-114 2-34 (167)
282 PRK04296 thymidine kinase; Pro 96.8 0.0021 4.6E-08 61.2 5.5 31 83-113 4-37 (190)
283 PRK05800 cobU adenosylcobinami 96.8 0.0044 9.5E-08 58.0 7.4 47 83-130 3-49 (170)
284 PF07088 GvpD: GvpD gas vesicl 96.7 0.0032 7E-08 65.2 6.7 44 80-125 9-54 (484)
285 TIGR02655 circ_KaiC circadian 96.7 0.0075 1.6E-07 65.9 10.1 58 67-126 249-309 (484)
286 COG1224 TIP49 DNA helicase TIP 96.7 0.0021 4.4E-08 65.7 5.2 67 54-120 35-106 (450)
287 PRK05818 DNA polymerase III su 96.7 0.0087 1.9E-07 59.5 9.4 149 83-265 9-167 (261)
288 PRK04328 hypothetical protein; 96.7 0.017 3.7E-07 57.5 11.6 55 69-125 11-68 (249)
289 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.023 5E-07 55.5 12.4 54 69-124 8-64 (229)
290 PLN03186 DNA repair protein RA 96.7 0.012 2.7E-07 61.2 10.7 61 70-131 112-181 (342)
291 cd01121 Sms Sms (bacterial rad 96.7 0.0076 1.6E-07 63.5 9.2 49 68-116 69-120 (372)
292 PRK14974 cell division protein 96.6 0.037 8E-07 57.5 14.0 36 83-118 142-180 (336)
293 PRK07132 DNA polymerase III su 96.6 0.037 8.1E-07 56.5 13.8 71 188-266 90-160 (299)
294 COG5271 MDN1 AAA ATPase contai 96.6 0.011 2.3E-07 70.5 10.7 50 65-118 1531-1580(4600)
295 PHA02624 large T antigen; Prov 96.6 0.0042 9.1E-08 68.2 7.1 39 80-118 430-468 (647)
296 COG1485 Predicted ATPase [Gene 96.6 0.0078 1.7E-07 61.7 8.5 111 82-240 66-177 (367)
297 KOG4658 Apoptotic ATPase [Sign 96.6 0.011 2.5E-07 68.7 11.1 72 61-134 161-238 (889)
298 PRK00771 signal recognition pa 96.6 0.021 4.6E-07 61.3 12.3 51 68-118 76-135 (437)
299 TIGR03880 KaiC_arch_3 KaiC dom 96.6 0.016 3.5E-07 56.4 10.5 55 70-126 5-62 (224)
300 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0024 5.2E-08 66.4 4.7 49 59-107 52-104 (361)
301 PF13245 AAA_19: Part of AAA d 96.6 0.0035 7.7E-08 50.4 4.7 23 82-104 11-33 (76)
302 COG1102 Cmk Cytidylate kinase 96.6 0.0027 5.8E-08 58.1 4.4 40 84-131 3-42 (179)
303 PF07726 AAA_3: ATPase family 96.6 0.0024 5.2E-08 56.5 3.8 33 83-115 1-33 (131)
304 PRK05917 DNA polymerase III su 96.6 0.06 1.3E-06 54.6 14.5 149 65-255 4-154 (290)
305 TIGR02239 recomb_RAD51 DNA rep 96.5 0.014 3E-07 60.2 9.7 53 70-122 85-146 (316)
306 TIGR01447 recD exodeoxyribonuc 96.5 0.0094 2E-07 66.5 8.9 24 82-105 161-184 (586)
307 PRK13833 conjugal transfer pro 96.4 0.0071 1.5E-07 62.4 7.0 54 48-105 115-168 (323)
308 TIGR00764 lon_rel lon-related 96.4 0.0084 1.8E-07 67.2 7.9 74 54-133 14-92 (608)
309 TIGR02782 TrbB_P P-type conjug 96.4 0.01 2.2E-07 60.7 7.8 55 48-106 103-157 (299)
310 TIGR02688 conserved hypothetic 96.4 0.026 5.6E-07 59.8 10.8 42 62-104 191-232 (449)
311 PF13479 AAA_24: AAA domain 96.3 0.0072 1.6E-07 58.7 6.2 29 83-116 5-33 (213)
312 PF00910 RNA_helicase: RNA hel 96.3 0.0027 5.9E-08 54.5 2.9 23 84-106 1-23 (107)
313 PRK00131 aroK shikimate kinase 96.3 0.004 8.6E-08 57.7 4.2 31 81-111 4-34 (175)
314 TIGR02442 Cob-chelat-sub cobal 96.3 0.017 3.7E-07 65.2 10.0 46 59-106 5-50 (633)
315 PF13671 AAA_33: AAA domain; P 96.3 0.0048 1E-07 55.3 4.2 28 84-113 2-29 (143)
316 PRK13947 shikimate kinase; Pro 96.2 0.0047 1E-07 57.4 4.2 30 82-111 2-31 (171)
317 PRK09302 circadian clock prote 96.2 0.022 4.7E-07 62.8 10.1 58 68-127 260-320 (509)
318 COG1936 Predicted nucleotide k 96.2 0.0034 7.5E-08 58.1 3.1 30 83-113 2-31 (180)
319 COG2842 Uncharacterized ATPase 96.2 0.027 5.9E-07 56.5 9.5 120 70-233 83-202 (297)
320 TIGR01967 DEAH_box_HrpA ATP-de 96.2 0.029 6.3E-07 67.2 11.1 69 59-132 65-136 (1283)
321 cd03115 SRP The signal recogni 96.2 0.043 9.4E-07 51.0 10.2 35 84-118 3-40 (173)
322 PRK13695 putative NTPase; Prov 96.1 0.0051 1.1E-07 57.5 3.9 72 188-265 96-169 (174)
323 cd00544 CobU Adenosylcobinamid 96.1 0.044 9.6E-07 51.2 10.0 36 84-119 2-37 (169)
324 TIGR00368 Mg chelatase-related 96.1 0.036 7.8E-07 60.7 10.8 57 58-118 192-250 (499)
325 COG1643 HrpA HrpA-like helicas 96.1 0.046 1E-06 62.9 12.0 171 59-259 48-241 (845)
326 PRK03839 putative kinase; Prov 96.1 0.0054 1.2E-07 57.6 3.8 28 83-110 2-29 (180)
327 PRK12723 flagellar biosynthesi 96.1 0.086 1.9E-06 55.8 13.2 35 83-117 176-217 (388)
328 PF13238 AAA_18: AAA domain; P 96.1 0.0043 9.2E-08 54.2 2.9 22 84-105 1-22 (129)
329 PRK09376 rho transcription ter 96.1 0.014 3E-07 61.4 7.0 26 81-106 169-194 (416)
330 COG3899 Predicted ATPase [Gene 96.1 0.18 3.9E-06 58.9 16.8 49 60-108 2-51 (849)
331 KOG1051 Chaperone HSP104 and r 96.0 0.04 8.7E-07 63.4 11.0 61 56-116 560-629 (898)
332 COG3604 FhlA Transcriptional r 96.0 0.016 3.6E-07 61.8 7.3 79 58-141 223-304 (550)
333 TIGR00376 DNA helicase, putati 96.0 0.013 2.9E-07 66.0 7.1 38 64-105 160-197 (637)
334 cd00227 CPT Chloramphenicol (C 96.0 0.006 1.3E-07 57.2 3.7 32 81-112 2-33 (175)
335 PF00270 DEAD: DEAD/DEAH box h 96.0 0.021 4.5E-07 52.4 7.3 44 189-235 120-163 (169)
336 PRK13894 conjugal transfer ATP 96.0 0.016 3.4E-07 59.8 6.9 56 46-105 117-172 (319)
337 PRK09302 circadian clock prote 96.0 0.044 9.6E-07 60.3 10.9 56 70-127 20-79 (509)
338 PRK07261 topology modulation p 96.0 0.0072 1.6E-07 56.6 4.0 32 83-114 2-33 (171)
339 PF10236 DAP3: Mitochondrial r 96.0 0.24 5.3E-06 50.9 15.5 23 82-104 24-46 (309)
340 PF06309 Torsin: Torsin; Inte 96.0 0.014 3E-07 51.5 5.4 49 56-105 23-77 (127)
341 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.0071 1.5E-07 56.8 3.9 29 84-114 2-30 (183)
342 PRK09519 recA DNA recombinatio 95.9 0.037 8E-07 63.2 10.2 52 69-120 47-102 (790)
343 TIGR02768 TraA_Ti Ti-type conj 95.9 0.021 4.7E-07 65.6 8.5 43 60-106 351-393 (744)
344 TIGR02236 recomb_radA DNA repa 95.9 0.019 4.1E-07 59.0 7.4 56 70-125 84-148 (310)
345 PRK06762 hypothetical protein; 95.9 0.0087 1.9E-07 55.3 4.4 32 83-114 4-35 (166)
346 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.9 0.011 2.3E-07 56.9 5.1 25 81-105 38-62 (205)
347 PRK10646 ADP-binding protein; 95.9 0.014 3.1E-07 53.4 5.6 44 64-107 11-54 (153)
348 PRK00625 shikimate kinase; Pro 95.9 0.0075 1.6E-07 56.6 3.9 31 83-113 2-32 (173)
349 PRK13765 ATP-dependent proteas 95.9 0.017 3.7E-07 64.8 7.3 74 55-133 28-105 (637)
350 cd00464 SK Shikimate kinase (S 95.9 0.0082 1.8E-07 54.5 4.0 28 83-110 1-28 (154)
351 PRK14530 adenylate kinase; Pro 95.9 0.0079 1.7E-07 58.3 4.1 29 82-110 4-32 (215)
352 COG4650 RtcR Sigma54-dependent 95.9 0.021 4.6E-07 56.9 7.0 68 52-119 178-252 (531)
353 PRK11131 ATP-dependent RNA hel 95.9 0.054 1.2E-06 64.9 11.5 63 66-132 78-143 (1294)
354 PRK10365 transcriptional regul 95.9 0.09 2E-06 56.5 12.5 38 81-118 162-202 (441)
355 PRK15455 PrkA family serine pr 95.8 0.01 2.2E-07 65.0 5.0 54 58-111 76-133 (644)
356 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.012 2.7E-07 57.1 5.1 22 82-103 30-51 (213)
357 PF03266 NTPase_1: NTPase; In 95.8 0.0064 1.4E-07 56.8 2.9 23 83-105 1-23 (168)
358 PRK06217 hypothetical protein; 95.8 0.0095 2E-07 56.3 4.1 31 83-113 3-33 (183)
359 PRK06547 hypothetical protein; 95.8 0.011 2.4E-07 55.4 4.5 28 83-110 17-44 (172)
360 PRK04040 adenylate kinase; Pro 95.8 0.01 2.2E-07 56.5 4.2 32 83-114 4-35 (188)
361 PRK14532 adenylate kinase; Pro 95.8 0.0088 1.9E-07 56.5 3.7 27 83-109 2-28 (188)
362 PF13481 AAA_25: AAA domain; P 95.7 0.12 2.5E-06 48.8 11.4 46 81-128 32-90 (193)
363 PRK13407 bchI magnesium chelat 95.7 0.024 5.1E-07 58.8 6.9 46 58-106 8-54 (334)
364 PRK13889 conjugal transfer rel 95.7 0.032 7E-07 65.5 8.6 39 63-105 348-386 (988)
365 PRK13949 shikimate kinase; Pro 95.7 0.011 2.4E-07 55.3 3.9 30 82-111 2-31 (169)
366 TIGR02655 circ_KaiC circadian 95.7 0.084 1.8E-06 57.8 11.4 55 70-126 10-68 (484)
367 TIGR01360 aden_kin_iso1 adenyl 95.7 0.011 2.5E-07 55.4 4.1 28 81-108 3-30 (188)
368 PF08423 Rad51: Rad51; InterP 95.7 0.052 1.1E-06 54.2 8.9 111 70-201 27-146 (256)
369 PRK14531 adenylate kinase; Pro 95.6 0.012 2.5E-07 55.7 3.9 30 83-114 4-33 (183)
370 cd02020 CMPK Cytidine monophos 95.6 0.012 2.7E-07 52.7 3.9 29 84-112 2-30 (147)
371 PF05970 PIF1: PIF1-like helic 95.6 0.027 5.8E-07 59.3 7.0 28 80-107 21-48 (364)
372 TIGR01970 DEAH_box_HrpB ATP-de 95.6 0.11 2.3E-06 60.3 12.3 37 65-105 5-42 (819)
373 PRK10263 DNA translocase FtsK; 95.6 0.031 6.7E-07 66.2 7.8 78 188-266 1140-1218(1355)
374 PRK14528 adenylate kinase; Pro 95.6 0.013 2.8E-07 55.6 4.0 29 82-110 2-30 (186)
375 KOG1942 DNA helicase, TBP-inte 95.6 0.011 2.5E-07 58.8 3.7 65 56-120 36-105 (456)
376 COG1672 Predicted ATPase (AAA+ 95.6 0.028 6.1E-07 58.9 6.9 56 58-115 2-57 (359)
377 KOG2383 Predicted ATPase [Gene 95.5 0.089 1.9E-06 54.9 10.1 23 84-106 117-139 (467)
378 cd01428 ADK Adenylate kinase ( 95.5 0.013 2.7E-07 55.5 3.8 27 83-109 1-27 (194)
379 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.023 5E-07 58.7 5.8 66 58-123 61-132 (358)
380 cd01130 VirB11-like_ATPase Typ 95.5 0.029 6.3E-07 53.1 6.1 38 65-106 13-50 (186)
381 PHA00729 NTP-binding motif con 95.5 0.01 2.2E-07 57.8 3.0 25 82-106 18-42 (226)
382 KOG1808 AAA ATPase containing 95.5 0.051 1.1E-06 66.6 9.4 141 81-266 440-597 (1856)
383 cd02019 NK Nucleoside/nucleoti 95.4 0.024 5.3E-07 44.5 4.6 29 84-112 2-31 (69)
384 COG1124 DppF ABC-type dipeptid 95.4 0.035 7.5E-07 54.3 6.3 44 188-234 159-202 (252)
385 PRK14737 gmk guanylate kinase; 95.4 0.013 2.9E-07 55.6 3.4 26 81-106 4-29 (186)
386 PRK02496 adk adenylate kinase; 95.4 0.016 3.5E-07 54.5 4.0 29 83-111 3-31 (184)
387 COG0802 Predicted ATPase or ki 95.4 0.066 1.4E-06 48.6 7.6 46 62-107 6-51 (149)
388 PLN02674 adenylate kinase 95.3 0.028 6.1E-07 55.6 5.7 32 81-114 31-62 (244)
389 cd02021 GntK Gluconate kinase 95.3 0.016 3.5E-07 52.5 3.6 33 84-118 2-34 (150)
390 PRK11664 ATP-dependent RNA hel 95.3 0.08 1.7E-06 61.4 10.0 36 65-104 8-44 (812)
391 PF08433 KTI12: Chromatin asso 95.3 0.017 3.7E-07 58.2 4.0 32 82-113 2-36 (270)
392 TIGR01313 therm_gnt_kin carboh 95.3 0.016 3.6E-07 53.3 3.6 32 84-117 1-32 (163)
393 COG0703 AroK Shikimate kinase 95.3 0.019 4.1E-07 53.5 3.9 32 82-113 3-34 (172)
394 cd00561 CobA_CobO_BtuR ATP:cor 95.3 0.42 9E-06 44.2 12.7 52 188-242 95-146 (159)
395 PRK13826 Dtr system oriT relax 95.3 0.052 1.1E-06 64.2 8.4 41 62-106 382-422 (1102)
396 PRK07667 uridine kinase; Provi 95.3 0.037 8E-07 52.8 6.0 51 68-118 4-57 (193)
397 TIGR01351 adk adenylate kinase 95.2 0.019 4.1E-07 55.5 4.0 27 84-110 2-28 (210)
398 PRK00279 adk adenylate kinase; 95.2 0.019 4.1E-07 55.7 4.0 30 83-114 2-31 (215)
399 PRK13851 type IV secretion sys 95.2 0.015 3.2E-07 60.6 3.3 37 70-106 151-187 (344)
400 PF13521 AAA_28: AAA domain; P 95.2 0.013 2.8E-07 54.0 2.7 21 84-104 2-22 (163)
401 COG1618 Predicted nucleotide k 95.2 0.015 3.2E-07 53.3 2.8 25 83-107 7-31 (179)
402 PTZ00088 adenylate kinase 1; P 95.1 0.02 4.4E-07 56.2 3.9 30 83-112 8-37 (229)
403 PF02367 UPF0079: Uncharacteri 95.1 0.017 3.8E-07 50.9 3.1 38 70-107 4-41 (123)
404 PF00437 T2SE: Type II/IV secr 95.1 0.012 2.7E-07 59.0 2.5 43 66-108 112-154 (270)
405 PLN02165 adenylate isopentenyl 95.1 0.063 1.4E-06 55.4 7.5 29 80-108 42-70 (334)
406 PRK13900 type IV secretion sys 95.1 0.019 4.2E-07 59.6 3.8 38 70-107 149-186 (332)
407 PLN02200 adenylate kinase fami 95.1 0.025 5.5E-07 55.7 4.5 31 83-115 45-75 (234)
408 COG0630 VirB11 Type IV secreto 95.1 0.15 3.3E-06 52.5 10.2 58 45-106 111-168 (312)
409 PRK08233 hypothetical protein; 95.0 0.028 6E-07 52.5 4.4 33 83-115 5-38 (182)
410 PRK13946 shikimate kinase; Pro 95.0 0.025 5.4E-07 53.5 4.1 30 82-111 11-40 (184)
411 PF08303 tRNA_lig_kinase: tRNA 95.0 0.15 3.2E-06 47.1 8.9 25 87-112 5-29 (168)
412 COG0467 RAD55 RecA-superfamily 95.0 0.055 1.2E-06 54.1 6.7 54 72-127 14-70 (260)
413 PRK13948 shikimate kinase; Pro 95.0 0.028 6.2E-07 53.2 4.3 31 81-111 10-40 (182)
414 COG0563 Adk Adenylate kinase a 95.0 0.026 5.6E-07 53.3 3.9 28 83-110 2-29 (178)
415 PF01078 Mg_chelatase: Magnesi 94.9 0.045 9.7E-07 52.6 5.4 43 60-106 5-47 (206)
416 PRK03731 aroL shikimate kinase 94.9 0.029 6.3E-07 52.1 4.0 29 82-110 3-31 (171)
417 PRK01184 hypothetical protein; 94.8 0.027 5.9E-07 53.0 3.8 26 83-109 3-28 (184)
418 cd02027 APSK Adenosine 5'-phos 94.8 0.035 7.5E-07 50.7 4.3 30 84-113 2-34 (149)
419 PF00625 Guanylate_kin: Guanyl 94.8 0.038 8.2E-07 52.1 4.8 32 81-112 2-33 (183)
420 cd01129 PulE-GspE PulE/GspE Th 94.8 0.048 1E-06 54.8 5.7 44 60-106 62-105 (264)
421 COG0194 Gmk Guanylate kinase [ 94.8 0.031 6.7E-07 52.5 3.9 25 82-106 5-29 (191)
422 TIGR02031 BchD-ChlD magnesium 94.8 0.089 1.9E-06 58.9 8.3 34 81-114 16-51 (589)
423 PF07931 CPT: Chloramphenicol 94.8 0.032 6.9E-07 52.4 4.0 32 83-114 3-34 (174)
424 PF01745 IPT: Isopentenyl tran 94.8 0.029 6.3E-07 53.9 3.7 36 84-119 4-39 (233)
425 PRK05057 aroK shikimate kinase 94.7 0.033 7.1E-07 52.2 4.0 30 82-111 5-34 (172)
426 KOG0923 mRNA splicing factor A 94.7 0.18 3.9E-06 55.6 9.9 148 81-254 280-450 (902)
427 COG4608 AppF ABC-type oligopep 94.7 0.17 3.8E-06 50.4 9.1 125 80-234 38-170 (268)
428 COG0324 MiaA tRNA delta(2)-iso 94.7 0.047 1E-06 55.6 5.3 37 82-118 4-40 (308)
429 PRK05537 bifunctional sulfate 94.7 0.039 8.4E-07 61.5 5.1 58 57-114 368-429 (568)
430 TIGR02173 cyt_kin_arch cytidyl 94.7 0.033 7.2E-07 51.4 3.9 25 84-108 3-27 (171)
431 COG2805 PilT Tfp pilus assembl 94.7 0.056 1.2E-06 54.4 5.6 27 81-107 125-151 (353)
432 PRK04182 cytidylate kinase; Pr 94.7 0.034 7.3E-07 51.8 4.0 27 83-109 2-28 (180)
433 PRK14527 adenylate kinase; Pro 94.7 0.032 6.9E-07 53.0 3.8 28 82-109 7-34 (191)
434 PRK08154 anaerobic benzoate ca 94.7 0.059 1.3E-06 55.4 6.0 31 80-110 132-162 (309)
435 PRK14733 coaE dephospho-CoA ki 94.6 0.043 9.4E-07 52.9 4.6 50 83-134 8-61 (204)
436 PF06414 Zeta_toxin: Zeta toxi 94.6 0.036 7.9E-07 53.0 4.1 46 84-129 18-64 (199)
437 PF04851 ResIII: Type III rest 94.6 0.056 1.2E-06 50.0 5.2 64 63-131 5-70 (184)
438 PHA02530 pseT polynucleotide k 94.5 0.037 7.9E-07 56.4 4.2 31 83-114 4-34 (300)
439 PRK10078 ribose 1,5-bisphospho 94.5 0.034 7.4E-07 52.6 3.7 27 82-108 3-29 (186)
440 PRK00091 miaA tRNA delta(2)-is 94.5 0.037 7.9E-07 56.8 4.1 36 82-117 5-40 (307)
441 PLN02199 shikimate kinase 94.5 0.073 1.6E-06 54.0 6.1 45 66-111 88-132 (303)
442 TIGR00614 recQ_fam ATP-depende 94.5 0.75 1.6E-05 50.1 14.5 46 188-235 127-173 (470)
443 cd00268 DEADc DEAD-box helicas 94.5 0.55 1.2E-05 44.5 11.9 31 62-97 22-52 (203)
444 PF00448 SRP54: SRP54-type pro 94.5 0.28 6E-06 47.0 9.7 37 83-119 3-42 (196)
445 PRK05541 adenylylsulfate kinas 94.4 0.048 1E-06 50.9 4.4 33 81-113 7-42 (176)
446 TIGR02322 phosphon_PhnN phosph 94.4 0.034 7.3E-07 52.1 3.4 25 83-107 3-27 (179)
447 cd00071 GMPK Guanosine monopho 94.4 0.043 9.2E-07 49.4 3.8 27 84-110 2-28 (137)
448 COG1066 Sms Predicted ATP-depe 94.4 0.22 4.7E-06 52.4 9.3 52 66-117 78-131 (456)
449 PRK09270 nucleoside triphospha 94.4 0.056 1.2E-06 53.0 5.0 60 62-121 7-77 (229)
450 KOG0920 ATP-dependent RNA heli 94.4 0.23 5E-06 57.5 10.3 61 67-131 178-243 (924)
451 cd02028 UMPK_like Uridine mono 94.4 0.049 1.1E-06 51.3 4.3 36 84-119 2-40 (179)
452 PRK12339 2-phosphoglycerate ki 94.4 0.046 1E-06 52.4 4.1 26 83-108 5-30 (197)
453 TIGR03574 selen_PSTK L-seryl-t 94.3 0.047 1E-06 54.2 4.3 30 84-113 2-34 (249)
454 PF08477 Miro: Miro-like prote 94.3 0.039 8.4E-07 47.5 3.2 22 84-105 2-23 (119)
455 TIGR00750 lao LAO/AO transport 94.3 0.062 1.4E-06 55.0 5.2 49 67-115 20-71 (300)
456 COG1674 FtsK DNA segregation A 94.3 0.054 1.2E-06 63.4 5.2 77 188-265 639-715 (858)
457 KOG1803 DNA helicase [Replicat 94.2 0.038 8.2E-07 60.2 3.6 23 82-104 202-224 (649)
458 PF00406 ADK: Adenylate kinase 94.2 0.034 7.3E-07 50.6 2.8 27 86-114 1-27 (151)
459 KOG0922 DEAH-box RNA helicase 94.2 0.28 6E-06 54.3 10.0 146 58-235 48-206 (674)
460 TIGR00174 miaA tRNA isopenteny 94.2 0.051 1.1E-06 55.1 4.2 35 84-118 2-36 (287)
461 COG4178 ABC-type uncharacteriz 94.2 0.097 2.1E-06 57.9 6.6 27 79-105 417-443 (604)
462 PRK05748 replicative DNA helic 94.2 0.48 1.1E-05 51.3 12.1 52 79-132 201-256 (448)
463 PRK11776 ATP-dependent RNA hel 94.2 0.23 4.9E-06 54.0 9.5 37 65-106 30-67 (460)
464 PRK06761 hypothetical protein; 94.1 0.054 1.2E-06 54.8 4.3 32 83-114 5-36 (282)
465 PRK05439 pantothenate kinase; 94.1 0.13 2.8E-06 52.8 7.1 53 69-121 73-131 (311)
466 PF13555 AAA_29: P-loop contai 94.1 0.053 1.2E-06 41.8 3.2 24 82-105 24-47 (62)
467 PRK14526 adenylate kinase; Pro 94.1 0.05 1.1E-06 52.7 3.9 27 83-109 2-28 (211)
468 COG0572 Udk Uridine kinase [Nu 94.1 0.058 1.2E-06 52.2 4.1 34 84-117 11-44 (218)
469 KOG0925 mRNA splicing factor A 94.1 1.1 2.4E-05 47.9 13.7 165 46-234 27-201 (699)
470 PRK11057 ATP-dependent DNA hel 94.1 0.9 1.9E-05 51.2 14.3 32 62-98 26-57 (607)
471 KOG0328 Predicted ATP-dependen 94.1 0.023 5E-07 56.3 1.4 72 188-264 169-244 (400)
472 PRK10867 signal recognition pa 94.0 0.74 1.6E-05 49.5 12.9 52 68-119 80-142 (433)
473 PHA02774 E1; Provisional 94.0 0.12 2.5E-06 57.0 6.7 48 66-114 420-468 (613)
474 TIGR00959 ffh signal recogniti 94.0 0.89 1.9E-05 48.9 13.3 52 68-119 79-141 (428)
475 TIGR02030 BchI-ChlI magnesium 93.9 0.084 1.8E-06 54.9 5.3 46 59-107 5-51 (337)
476 PRK14729 miaA tRNA delta(2)-is 93.9 0.1 2.2E-06 53.3 5.8 31 82-115 5-35 (300)
477 PF03029 ATP_bind_1: Conserved 93.9 0.05 1.1E-06 53.8 3.5 29 86-114 1-32 (238)
478 PHA02542 41 41 helicase; Provi 93.9 0.37 8.1E-06 52.5 10.5 49 81-131 190-241 (473)
479 PRK00889 adenylylsulfate kinas 93.9 0.071 1.5E-06 49.7 4.4 35 81-115 4-41 (175)
480 cd01131 PilT Pilus retraction 93.9 0.047 1E-06 52.3 3.2 24 83-106 3-26 (198)
481 TIGR00708 cobA cob(I)alamin ad 93.9 0.59 1.3E-05 43.8 10.3 135 82-242 6-148 (173)
482 PRK05480 uridine/cytidine kina 93.9 0.078 1.7E-06 51.0 4.7 35 83-117 8-43 (209)
483 PLN02840 tRNA dimethylallyltra 93.8 0.065 1.4E-06 57.0 4.4 36 82-117 22-57 (421)
484 PTZ00424 helicase 45; Provisio 93.8 0.5 1.1E-05 50.1 11.2 38 63-105 52-90 (401)
485 cd02023 UMPK Uridine monophosp 93.8 0.085 1.8E-06 50.3 4.7 33 84-116 2-35 (198)
486 KOG1533 Predicted GTPase [Gene 93.8 0.27 5.9E-06 47.9 8.0 31 84-114 5-38 (290)
487 PF01443 Viral_helicase1: Vira 93.8 0.045 9.8E-07 53.3 2.9 22 84-105 1-22 (234)
488 PTZ00301 uridine kinase; Provi 93.8 0.087 1.9E-06 51.1 4.8 34 83-116 5-42 (210)
489 smart00072 GuKc Guanylate kina 93.8 0.068 1.5E-06 50.5 4.0 30 82-111 3-32 (184)
490 TIGR02533 type_II_gspE general 93.8 0.083 1.8E-06 57.7 5.2 44 60-106 224-267 (486)
491 COG2804 PulE Type II secretory 93.7 0.18 3.9E-06 54.4 7.4 45 60-107 240-284 (500)
492 TIGR02788 VirB11 P-type DNA tr 93.7 0.06 1.3E-06 55.4 3.8 36 71-106 134-169 (308)
493 KOG0924 mRNA splicing factor A 93.7 0.42 9.1E-06 53.0 10.1 142 68-238 362-515 (1042)
494 PRK10436 hypothetical protein; 93.7 0.09 1.9E-06 57.0 5.2 45 60-107 200-244 (462)
495 PF00485 PRK: Phosphoribulokin 93.7 0.052 1.1E-06 51.7 3.0 23 84-106 2-24 (194)
496 PRK01172 ski2-like helicase; P 93.7 0.48 1E-05 54.1 11.3 46 63-113 24-72 (674)
497 cd01125 repA Hexameric Replica 93.6 0.31 6.7E-06 48.0 8.6 33 84-116 4-51 (239)
498 TIGR01618 phage_P_loop phage n 93.6 0.042 9.1E-07 53.6 2.4 29 83-115 14-42 (220)
499 PRK00300 gmk guanylate kinase; 93.6 0.065 1.4E-06 51.2 3.6 26 81-106 5-30 (205)
500 TIGR03499 FlhF flagellar biosy 93.6 0.3 6.6E-06 49.5 8.6 36 83-118 196-236 (282)
No 1
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-86 Score=660.74 Aligned_cols=429 Identities=32% Similarity=0.522 Sum_probs=350.5
Q ss_pred HHhhcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.+...+||||.||..|.+++++.....|+ ++|||.+|||||.++++++++++.+.+|+||.+|+|.+.++++|++++..
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhcc
Confidence 35568999999999999999986555565 59999999999999999999999999999999999999999999999841
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
. +..|.....-|+++.+|+..|.+.=+. ...+.+++||||++|.|++++ ..+|+.|
T Consensus 83 ~---d~dg~~~~~~~en~~d~i~~l~q~~~~-------------------t~~d~~~~liLDnad~lrD~~--a~ll~~l 138 (438)
T KOG2543|consen 83 A---DKDGDKVEGDAENFSDFIYLLVQWPAA-------------------TNRDQKVFLILDNADALRDMD--AILLQCL 138 (438)
T ss_pred C---CCchhhhhhHHHHHHHHHHHHHhhHHh-------------------hccCceEEEEEcCHHhhhccc--hHHHHHH
Confidence 1 112333233367888887766543211 113568999999999999866 8999999
Q ss_pred HhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcCC---ChhhhhHHHHHHhhccccccC
Q 009352 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA---NQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~---~~~l~~~~~~~il~~~~~~~r 290 (537)
++|+|+.+.+.+.+|++....+..|+.++|...+..+|||.|+.+|+.+|+.++++ ...+|.+|++.++.+|+.+|+
T Consensus 139 ~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr 218 (438)
T KOG2543|consen 139 FRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR 218 (438)
T ss_pred HHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC
Confidence 99999999887777777766667778889988889999999999999999998887 356799999999999999999
Q ss_pred CHHHHHHHHHHhhhhhhhhhhcCCCCCChhhHHHHHhhhhhhHHhhHHHhhhcCCCCccccCCcccccccCCCcccCCCC
Q 009352 291 RVDELSTAFSLLFKRYCEPLSDLGVLPNGEMKRRLFSHLQPHIAPSLNEIFRVASQPCLECGVNQETRRKGGARKSVGSG 370 (537)
Q Consensus 291 ~l~~L~~~~~~lw~~y~~P~~~~~~~~~e~~~~~L~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (537)
|+++|+..+...|++||+|+.+|++.+.+ +++||++++|++...++.+|.+...+. +.+ .++....++..++
T Consensus 219 d~~eL~~~~~~~wpky~epi~~~~i~~~d--~~~L~r~ik~~L~~~~~~~~~~e~~~s-~~e-----~~~~~~~~~~~r~ 290 (438)
T KOG2543|consen 219 DVNELRSLISLAWPKYCEPITKGKIDPTD--KARLWRHIKPFLGSDLNEIYRREIESS-EDE-----NRLAMEDKSLNRK 290 (438)
T ss_pred CHHHHHHHHHHHHHhhccccccCCCChhH--HHHHHHHhhHhhhhhhHHHHHhcCchh-hhh-----hhhhhhhhhhhhh
Confidence 99999999999999999999999999988 789999999999999999997743322 111 1111111112222
Q ss_pred CCCCcccCcchhhhHHhhhhhhhcCCCCCcccccc-cccCCCCccccccccchhhHHHHHHHHHHHHhcCCCcchHHHHH
Q 009352 371 DLDDIGFHMSTSAKYLLVSAFLASRNPATLDASLF-DTTGVSDSRKRKRKASEKSLEQKEAAEQELLMKGPGTFSLERLL 449 (537)
Q Consensus 371 ~~~~~~~~Lp~~sK~LLIAAYLAS~Np~~~D~~lF-~k~~~~~~~kRkr~~~~~~~~~~~~~~~~~~llgP~~F~LeRLl 449 (537)
-+...+++|||+|||||||||||||||+|+|+|+| .|++| |+|||. ++.+.+.++++... -+|||+|+|||||
T Consensus 291 ~~~~~~i~ls~ysKyLLIAAylASyNpar~DarfFs~K~hg---rqrk~~--~~~~~~~~t~~~~s-~LGPk~F~leRLL 364 (438)
T KOG2543|consen 291 LVALSEIELSYYSKYLLIAAYLASYNPARLDARFFSVKHHG---RQRKRS--EKLEKRLETNPRAS-DLGPKSFPLERLL 364 (438)
T ss_pred hhccccccchHHHHHHHHHHHHhccCchhccchhhhcccch---HHHHHh--HHHHhhhhcCcccc-ccCCCcccHHHHH
Confidence 22445689999999999999999999999999999 55553 444433 33322334443321 2899999999999
Q ss_pred HHHHHHhccCccccCCCCcccccccchhhHHHHHHHHHhhhccccccc-CCCCCCCCcceEEecCHHHHHHHhhhcCcch
Q 009352 450 AIFQCITSVGEEEEGNDGLRVDEGSNALMSDILLQLTSLCNSNFIVNG-GSCPLEGSTRYRSTLSEDLAMKVSREKMKAH 528 (537)
Q Consensus 450 AIf~aI~~~~~~~~~~~~~~~e~~~~~l~~dv~~qiatL~sl~Ll~~~-~~d~l~~~~k~kcnv~~e~i~~iA~sv~f~l 528 (537)
||||||++.++ .+.+++|||+||+||++||||+.+ +.|.||+++|||||||||+|++||+||+|+|
T Consensus 365 AIf~aI~~i~e-------------~~~lt~dlfsqIssL~sl~ll~~t~~~~~LdgspRykc~VslE~~lkIa~Sl~F~l 431 (438)
T KOG2543|consen 365 AIFYAILSINE-------------SVILTADLFSQISSLVSLKLLSVTSNRDNLDGSPRYKCNVSLEFALKIARSLNFNL 431 (438)
T ss_pred HHHHHHhChhh-------------hhcchhHHHHHHHHHHhhcchheecccccCCCCcceEEecCHHHHHHHHHHcCcCH
Confidence 99999998533 477899999999999999999987 6899999999999999999999999999999
Q ss_pred hchhcc
Q 009352 529 TKLSFR 534 (537)
Q Consensus 529 ~~yL~~ 534 (537)
.+||+|
T Consensus 432 ~~YL~d 437 (438)
T KOG2543|consen 432 SKYLYD 437 (438)
T ss_pred HHHhcc
Confidence 999987
No 2
>PF14630 ORC5_C: Origin recognition complex (ORC) subunit 5 C-terminus
Probab=100.00 E-value=2.3e-61 Score=484.44 Aligned_cols=259 Identities=27% Similarity=0.478 Sum_probs=207.7
Q ss_pred eecCCCCHHHHHHHHHhcCCC----------hhhhhHHHHHHhhcccccc-CCHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 009352 250 VYFPECTEDDLRQIFMRNQAN----------QKLYSSFLDIVLRPFCRIT-KRVDELSTAFSLLFKRYCEPLSDLGVLPN 318 (537)
Q Consensus 250 I~FppYt~~el~~IL~~~r~~----------~~l~~~~~~~il~~~~~~~-r~l~~L~~~~~~lw~~y~~P~~~~~~~~~ 318 (537)
|+||+|+++|+.+||...++. ..||.+|++.++++|+.+| +|+.+|+++|..+||.||+||.+|.+.++
T Consensus 1 I~Fp~Ys~~e~~~IL~~~~~~~~~~~~~~~~~~ly~~f~~~i~~~~~~~~~rdl~eL~~i~~~lwp~y~~Pi~~g~~~~~ 80 (271)
T PF14630_consen 1 IYFPPYSKDELLEILSLDQPSELPDLPDDIDRELYNQFVNLILDSFYSYTGRDLNELRHIAAKLWPKYVEPILEGEIDPS 80 (271)
T ss_pred CcCCCCCHHHHHHHHhhCCCcccccccchHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhcccCCChh
Confidence 799999999999999887764 6799999999999999999 89999999999999999999999999888
Q ss_pred hhhHHHHHhhhhhhHHhhHHHhhhcCCCCccccCCcccccccCCCcccCCCCCCCCcccCcchhhhHHhhhhhhhcCCCC
Q 009352 319 GEMKRRLFSHLQPHIAPSLNEIFRVASQPCLECGVNQETRRKGGARKSVGSGDLDDIGFHMSTSAKYLLVSAFLASRNPA 398 (537)
Q Consensus 319 e~~~~~L~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~sK~LLIAAYLAS~Np~ 398 (537)
+ ..+||++++|++..+++.+|.+..... +....+... . .............++|||++||||||||||||||+
T Consensus 81 ~--~~~L~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~--~--~~~~~~~~~~~~~~~Lp~~sK~LLIAAYLAS~Np~ 153 (271)
T PF14630_consen 81 D--FSKLYRAIRPLFRSALESLYNRSISSS-QWESAQSQE--N--SPSSSSQSNSSQSFELPYYSKYLLIAAYLASYNPP 153 (271)
T ss_pred H--HHHHHHHHHHHHHHHHHHHccCccccc-ccccccccc--c--cccccccccccccccCcHHHHHHHHHHHHHhcCCh
Confidence 7 458999999999999999986543221 111100000 0 00011111134568999999999999999999999
Q ss_pred CcccccccccCCCCccccccccchhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhccCccccCCCCcccccccchhh
Q 009352 399 TLDASLFDTTGVSDSRKRKRKASEKSLEQKEAAEQELLMKGPGTFSLERLLAIFQCITSVGEEEEGNDGLRVDEGSNALM 478 (537)
Q Consensus 399 ~~D~~lF~k~~~~~~~kRkr~~~~~~~~~~~~~~~~~~llgP~~F~LeRLlAIf~aI~~~~~~~~~~~~~~~e~~~~~l~ 478 (537)
++|+++|+|.++ |||||+++.+ .+++ +..++++||++||||||||||+||+++.+ . .....+
T Consensus 154 ~~D~r~F~k~~~---r~~kr~~~~~--~~~~--~~~~~llgP~~F~LeRLLAIf~aI~~~~~--~---------~~~~~~ 215 (271)
T PF14630_consen 154 RTDKRLFSKKKG---RKRKRKRGRR--RKKE--KISQRLLGPKPFPLERLLAIFYAILPEEV--A---------EELNSS 215 (271)
T ss_pred hHHHHHHHhccc---cccccccchh--hhhh--hhhhhccCCCcccHHHHHHHHHHHHhhcc--c---------cccccc
Confidence 999999999876 3333332211 1122 35678999999999999999999998632 1 013457
Q ss_pred HHHHHHHHHhhhccccccc-CCCCCCCCcceEEecCHHHHHHHhhhcCcchhchhc
Q 009352 479 SDILLQLTSLCNSNFIVNG-GSCPLEGSTRYRSTLSEDLAMKVSREKMKAHTKLSF 533 (537)
Q Consensus 479 ~dv~~qiatL~sl~Ll~~~-~~d~l~~~~k~kcnv~~e~i~~iA~sv~f~l~~yL~ 533 (537)
+|||+||+||++||||+++ +.|.||+++||||||+||+|+.||++|||||++||+
T Consensus 216 ~dv~~qIatL~sL~Ll~~~s~~d~Ld~~~k~rcnvs~e~i~~iA~sv~f~l~~YL~ 271 (271)
T PF14630_consen 216 ADVFSQIATLVSLRLLSRASSGDPLDGSPKWRCNVSWEFIREIAKSVGFDLDEYLY 271 (271)
T ss_pred hHHHHHHHHHHhCCCeeecCCCCccCCCCceEEECCHHHHHHHHHHcCcCHHHhcC
Confidence 8999999999999999995 579999889999999999999999999999999996
No 3
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.2e-25 Score=229.53 Aligned_cols=196 Identities=22% Similarity=0.377 Sum_probs=154.1
Q ss_pred CCCCChhHHhhcCCChHHHHHHHHHHHcccCCCC--CCeEEECCCCCCHHHHHHHHHHhcCCC-----eEEEeccccCCH
Q 009352 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSM--PPLFVYGSASTGKTSIIIQVFRHLSRP-----FVYTSCLSCYSP 120 (537)
Q Consensus 48 ~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~--~~l~I~G~~GtGKTsiv~~vl~~l~~~-----~~~inc~~~~s~ 120 (537)
.+.+..+++|+++|+||.|+++|..+|.+...+. .+++|||+||||||++++.+++++... ++||||....|+
T Consensus 7 ~~vl~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 7 KDVLLEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred ccccCCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 4456677899999999999999999999876543 359999999999999999999998743 899999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcc
Q 009352 121 RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (537)
Q Consensus 121 ~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L 200 (537)
..+|..|++++... +..|. +..++...+.+.+.. .+..+||||||+|.|
T Consensus 87 ~~i~~~i~~~~~~~---p~~g~-------~~~~~~~~l~~~~~~---------------------~~~~~IvvLDEid~L 135 (366)
T COG1474 87 YQVLSKILNKLGKV---PLTGD-------SSLEILKRLYDNLSK---------------------KGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHHHHHHHcCCC---CCCCC-------chHHHHHHHHHHHHh---------------------cCCeEEEEEcchhhh
Confidence 99999999999621 11232 333433333333321 457899999999999
Q ss_pred cccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc--cccccCCCC-CCCceeecCCCCHHHHHHHHHhcCCChhhhhHH
Q 009352 201 REWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP--DTYHSNTGY-VAPIHVYFPECTEDDLRQIFMRNQANQKLYSSF 277 (537)
Q Consensus 201 ~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~--~~f~~r~~~-~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~ 277 (537)
.+.+ +++|+.|+|+.+.. ..++.+|+|+|+.+ +.+.+|+.+ ..+.+|+||||+.+|+.+|| ..|.+.+|.++.
T Consensus 136 ~~~~--~~~LY~L~r~~~~~-~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il-~~R~~~~~~~~~ 211 (366)
T COG1474 136 VDKD--GEVLYSLLRAPGEN-KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDIL-RERVEEGFSAGV 211 (366)
T ss_pred cccc--chHHHHHHhhcccc-ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHH-HHHHHhhccCCC
Confidence 8744 58999999998875 35689999999974 566777774 36778999999999999999 477766665554
Q ss_pred H
Q 009352 278 L 278 (537)
Q Consensus 278 ~ 278 (537)
+
T Consensus 212 ~ 212 (366)
T COG1474 212 I 212 (366)
T ss_pred c
Confidence 4
No 4
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.89 E-value=7.3e-23 Score=224.07 Aligned_cols=200 Identities=21% Similarity=0.286 Sum_probs=144.5
Q ss_pred CChhHHhhcCCChHHHHHHHHHHHcccCC-CCC-C-eEEECCCCCCHHHHHHHHHHhcC----------CCeEEEecccc
Q 009352 51 ISLDDLLSRFPGRRVQILELLRLLGTLNS-SMP-P-LFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSC 117 (537)
Q Consensus 51 ~~~~~l~~~~~~Re~qi~~L~~ll~~~~~-~~~-~-l~I~G~~GtGKTsiv~~vl~~l~----------~~~~~inc~~~ 117 (537)
+.++++|+.+||||+|+++|..+|.+.+. ..+ . +||||+||||||++|+.|+++|. ..++||||+..
T Consensus 748 L~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 748 MQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred cCcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 46788999999999999999999988764 233 3 68999999999999999998873 46799999999
Q ss_pred CCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCC
Q 009352 118 YSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNF 197 (537)
Q Consensus 118 ~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~ 197 (537)
.++..+|..|+++|.+..+. .|.+ ..+ .++.++..+.. ......||||||+
T Consensus 828 stp~sIYqvI~qqL~g~~P~--~Gls-------S~e-------vLerLF~~L~k-------------~~r~v~IIILDEI 878 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPP--NALN-------SFK-------ILDRLFNQNKK-------------DNRNVSILIIDEI 878 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCC--cccc-------HHH-------HHHHHHhhhhc-------------ccccceEEEeehH
Confidence 99999999999999654322 2211 111 33333332210 1234679999999
Q ss_pred CcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCC--ccccccCCCCC-CCceeecCCCCHHHHHHHHHhcCCC---h
Q 009352 198 ELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYV-APIHVYFPECTEDDLRQIFMRNQAN---Q 271 (537)
Q Consensus 198 D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~--~~~f~~r~~~~-~p~~I~FppYt~~el~~IL~~~r~~---~ 271 (537)
|.|.. ..+++|+.|+++..... ..++||+|+|.. ++.+++++.++ .+..|.|+||+.+|+.+||. .|+. .
T Consensus 879 D~L~k--K~QDVLYnLFR~~~~s~-SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk-~RAe~A~g 954 (1164)
T PTZ00112 879 DYLIT--KTQKVLFTLFDWPTKIN-SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIK-ERLENCKE 954 (1164)
T ss_pred hhhCc--cHHHHHHHHHHHhhccC-CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHH-HHHHhCCC
Confidence 99986 34789999999876543 468899999863 45666666543 34579999999999999995 4443 2
Q ss_pred hhhhHHHHHHhh
Q 009352 272 KLYSSFLDIVLR 283 (537)
Q Consensus 272 ~l~~~~~~~il~ 283 (537)
.+.+..+..+..
T Consensus 955 VLdDdAIELIAr 966 (1164)
T PTZ00112 955 IIDHTAIQLCAR 966 (1164)
T ss_pred CCCHHHHHHHHH
Confidence 234444444444
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.88 E-value=9.6e-22 Score=208.27 Aligned_cols=227 Identities=21% Similarity=0.296 Sum_probs=156.5
Q ss_pred Ccccc-CCCCChhHHhhcCCChHHHHHHHHHHHcccCC--CCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEec
Q 009352 43 DLVFG-QEPISLDDLLSRFPGRRVQILELLRLLGTLNS--SMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSC 114 (537)
Q Consensus 43 ~~~f~-~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~--~~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc 114 (537)
+.+|. .+++.++++|+.|+|||+|+++|..++.+... ..++++||||||||||++++.+++++ +..++||||
T Consensus 14 ~~~~~~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 14 ETIFKDEEVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred CceeCChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 33664 66788889999999999999999999977543 33569999999999999999999887 467999999
Q ss_pred cccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEE
Q 009352 115 LSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIF 194 (537)
Q Consensus 115 ~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVL 194 (537)
..+.+...+|..|+.++.+...+ .++.+..++...+ .+.++ ..++++||||
T Consensus 94 ~~~~~~~~~~~~i~~~l~~~~~~--------~~~~~~~~~~~~~-------~~~l~--------------~~~~~~vivi 144 (394)
T PRK00411 94 QIDRTRYAIFSEIARQLFGHPPP--------SSGLSFDELFDKI-------AEYLD--------------ERDRVLIVAL 144 (394)
T ss_pred CcCCCHHHHHHHHHHHhcCCCCC--------CCCCCHHHHHHHH-------HHHHH--------------hcCCEEEEEE
Confidence 99999999999999999653211 1222333333322 22222 1346799999
Q ss_pred eCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc--cccccCCCC-CCCceeecCCCCHHHHHHHHHhcCCCh
Q 009352 195 DNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP--DTYHSNTGY-VAPIHVYFPECTEDDLRQIFMRNQANQ 271 (537)
Q Consensus 195 De~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~--~~f~~r~~~-~~p~~I~FppYt~~el~~IL~~~r~~~ 271 (537)
||+|.|.+. ...++++.|+++.+..+..++++|+|++... +.+.++..+ ..+..|+|+||+.+|+.+||. .+...
T Consensus 145 DE~d~l~~~-~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~-~r~~~ 222 (394)
T PRK00411 145 DDINYLFEK-EGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILK-DRVEE 222 (394)
T ss_pred CCHhHhhcc-CCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHH-HHHHh
Confidence 999999722 3367899999876654334799999999753 333333322 245689999999999999995 34322
Q ss_pred h-----hhhHHHHHHhhccccccCCHHHHHHHHH
Q 009352 272 K-----LYSSFLDIVLRPFCRITKRVDELSTAFS 300 (537)
Q Consensus 272 ~-----l~~~~~~~il~~~~~~~r~l~~L~~~~~ 300 (537)
+ +.+..++.+.....+.++|+.....++.
T Consensus 223 ~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 223 GFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred hcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2 3334444444444333445544444443
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.88 E-value=9.9e-22 Score=205.98 Aligned_cols=226 Identities=19% Similarity=0.254 Sum_probs=151.7
Q ss_pred CCCCChhHHhhcCCChHHHHHHHHHHHcccCC--CCCCeEEECCCCCCHHHHHHHHHHhcC---------CCeEEEeccc
Q 009352 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNS--SMPPLFVYGSASTGKTSIIIQVFRHLS---------RPFVYTSCLS 116 (537)
Q Consensus 48 ~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~--~~~~l~I~G~~GtGKTsiv~~vl~~l~---------~~~~~inc~~ 116 (537)
.+.++.+++|+.++|||+|+++|..++.+... ..++++||||||||||++++.+++++. ..++||||..
T Consensus 5 ~~~l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 5 RDLLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred hhhCCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 55678889999999999999999999987543 235799999999999999999998763 4689999999
Q ss_pred cCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeC
Q 009352 117 CYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDN 196 (537)
Q Consensus 117 ~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe 196 (537)
+.+...+|..|++++.+. |...+.++.+..+ .+..+++.+.. .++++||||||
T Consensus 85 ~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~-------~~~~l~~~l~~--------------~~~~~vlvIDE 137 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGS------GEEVPTTGLSTSE-------VFRRLYKELNE--------------RGDSLIIVLDE 137 (365)
T ss_pred CCCHHHHHHHHHHHHhhc------CCCCCCCCCCHHH-------HHHHHHHHHHh--------------cCCeEEEEECc
Confidence 999999999999999530 1111112222222 22222222211 34678999999
Q ss_pred CCcccccCCCCChHHHHHhhhhhc--CCCcEEEEEEeCCCc--cccccCCCCC-CCceeecCCCCHHHHHHHHHhcCCCh
Q 009352 197 FELVREWDKSSSILPFLFGLSDIL--KMPEVGMIFISSTSP--DTYHSNTGYV-APIHVYFPECTEDDLRQIFMRNQANQ 271 (537)
Q Consensus 197 ~D~L~~~d~~~~lL~~L~rl~e~~--~~~~l~vI~Is~~~~--~~f~~r~~~~-~p~~I~FppYt~~el~~IL~~~r~~~ 271 (537)
+|.|.. ..+++|+.|+++.+.. +..++++|+|+|.+. +.+.++..++ .+..|+|+||+.+|+.+||. .+...
T Consensus 138 ~d~L~~--~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~-~r~~~ 214 (365)
T TIGR02928 138 IDYLVG--DDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILE-NRAEK 214 (365)
T ss_pred hhhhcc--CCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHH-HHHHh
Confidence 999974 2367899999884432 225689999998753 3444443322 35689999999999999995 33321
Q ss_pred h-----hhhHHHHHHhhccccccCCHHHHHHHHHHhh
Q 009352 272 K-----LYSSFLDIVLRPFCRITKRVDELSTAFSLLF 303 (537)
Q Consensus 272 ~-----l~~~~~~~il~~~~~~~r~l~~L~~~~~~lw 303 (537)
. +.+..++.+........+|+.....++...+
T Consensus 215 ~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 215 AFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred hccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2 2233333333333223355555555554443
No 7
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.83 E-value=2.8e-20 Score=199.03 Aligned_cols=215 Identities=18% Similarity=0.270 Sum_probs=153.7
Q ss_pred CChhHHhhcCCChHHHHHHHHHHHcccCCC---CCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEecccc
Q 009352 51 ISLDDLLSRFPGRRVQILELLRLLGTLNSS---MPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSC 117 (537)
Q Consensus 51 ~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~---~~~l~I~G~~GtGKTsiv~~vl~~l~----------~~~~~inc~~~ 117 (537)
+.+..+|+.+||||.+..+|..++...++. +.++||+|.||||||.+|+.|++.|. ..|+.||++..
T Consensus 389 Lhls~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 389 LHLSAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred hHHhhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 356778899999999999999999887653 35799999999999999999999875 36788899999
Q ss_pred CCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCC
Q 009352 118 YSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNF 197 (537)
Q Consensus 118 ~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~ 197 (537)
.+++.+|+.|+.+|.+....+. ..+ . +++..+.. +.+...++||+|||+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~---------~al----~----~L~~~f~~--------------~k~~~~~~VvLiDEl 517 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWD---------AAL----E----ALNFRFTV--------------PKPKRSTTVVLIDEL 517 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHH---------HHH----H----HHHHhhcc--------------CCCCCCCEEEEeccH
Confidence 9999999999999977643321 111 1 22221110 123557889999999
Q ss_pred CcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCC--cccccc-CCCCC-CCceeecCCCCHHHHHHHHHhcCCC--h
Q 009352 198 ELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHS-NTGYV-APIHVYFPECTEDDLRQIFMRNQAN--Q 271 (537)
Q Consensus 198 D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~--~~~f~~-r~~~~-~p~~I~FppYt~~el~~IL~~~r~~--~ 271 (537)
|.|.. ..+++||.||.|..+-. ..+.||.|+|++ |++.+. ++.++ .-.+|.|.|||.+|+++|+. .|.. .
T Consensus 518 D~Lvt--r~QdVlYn~fdWpt~~~-sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~-~RL~~~~ 593 (767)
T KOG1514|consen 518 DILVT--RSQDVLYNIFDWPTLKN-SKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIIS-ARLKGLD 593 (767)
T ss_pred HHHhc--ccHHHHHHHhcCCcCCC-CceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHH-Hhhcchh
Confidence 99987 45999999999877643 568889998874 666653 33333 33699999999999999994 5542 2
Q ss_pred hhhhHHHHHHhh---ccccccCCHHHHHHHHH
Q 009352 272 KLYSSFLDIVLR---PFCRITKRVDELSTAFS 300 (537)
Q Consensus 272 ~l~~~~~~~il~---~~~~~~r~l~~L~~~~~ 300 (537)
.|-+..++.+-. ...+.+|....+...+.
T Consensus 594 ~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 594 AFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred hcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 333344444433 33445554444444333
No 8
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.2e-19 Score=186.53 Aligned_cols=210 Identities=19% Similarity=0.308 Sum_probs=150.7
Q ss_pred HhhcCCChHHHHHHHHHHHcccCC--CCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHHHHHHH
Q 009352 56 LLSRFPGRRVQILELLRLLGTLNS--SMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRILFESIL 128 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~~~--~~~~l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~s~~~l~~~Il 128 (537)
.+..++|||.|.+.+..++....+ ...++||.|.||||||.....++..+. ...+||||++..++..+|..|+
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 357899999999999999987654 456899999999999999999998875 2569999999999999999999
Q ss_pred HHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCC
Q 009352 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSS 208 (537)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~ 208 (537)
..+....... | +..+ ++..+..+.. ....++++|+||+|+|...+ +.
T Consensus 228 ~~~~q~~~s~--~--------~~~~-------~~~~~~~h~~--------------q~k~~~llVlDEmD~L~tr~--~~ 274 (529)
T KOG2227|consen 228 SSLLQDLVSP--G--------TGMQ-------HLEKFEKHTK--------------QSKFMLLLVLDEMDHLITRS--QT 274 (529)
T ss_pred HHHHHHhcCC--c--------hhHH-------HHHHHHHHHh--------------cccceEEEEechhhHHhhcc--cc
Confidence 9995442211 0 0122 2222222221 12369999999999999744 88
Q ss_pred hHHHHHhhhhhcCCCcEEEEEEeCCC--ccccccCCCC---CCCceeecCCCCHHHHHHHHHhcCCCh----hhhhHHHH
Q 009352 209 ILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGY---VAPIHVYFPECTEDDLRQIFMRNQANQ----KLYSSFLD 279 (537)
Q Consensus 209 lL~~L~rl~e~~~~~~l~vI~Is~~~--~~~f~~r~~~---~~p~~I~FppYt~~el~~IL~~~r~~~----~l~~~~~~ 279 (537)
+|+.||.|..+.. ..+.+|.|+|.. -|+|+++... ..|..++|+|||++|+.+||. ++... .+.+..+.
T Consensus 275 vLy~lFewp~lp~-sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~-~rl~~~~t~~~~~~Aie 352 (529)
T KOG2227|consen 275 VLYTLFEWPKLPN-SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQ-QRLSEESTSIFLNAAIE 352 (529)
T ss_pred eeeeehhcccCCc-ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHH-HHHhcccccccchHHHH
Confidence 9999998877632 335555566654 4899987764 378899999999999999995 44322 23333334
Q ss_pred HHhhccccccCCHHHHHHHHH
Q 009352 280 IVLRPFCRITKRVDELSTAFS 300 (537)
Q Consensus 280 ~il~~~~~~~r~l~~L~~~~~ 300 (537)
....-..+..+|+..+.++|.
T Consensus 353 ~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 353 LCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHHHhccCchhHHHHHHHHH
Confidence 444445556677777766666
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.27 E-value=2e-10 Score=121.53 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=99.7
Q ss_pred HhhcCCChHHHHHHHHHHHcccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009352 56 LLSRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~ 124 (537)
..+.+.|+++|+++|..++.... .+...++||||||||||++++++.++++.+++.++|.+..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~------ 202 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV------ 202 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh------
Confidence 45678999999999998763311 2234599999999999999999999999999988874321
Q ss_pred HHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
....+. + ...++.+++. .+ ...+.||+|||+|.|....
T Consensus 203 ----~~~~g~--------~-----------~~~i~~~f~~----a~---------------~~~p~IlfiDEiD~l~~~r 240 (389)
T PRK03992 203 ----QKFIGE--------G-----------ARLVRELFEL----AR---------------EKAPSIIFIDEIDAIAAKR 240 (389)
T ss_pred ----Hhhccc--------h-----------HHHHHHHHHH----HH---------------hcCCeEEEEechhhhhccc
Confidence 111110 0 0123333332 11 2346789999999995321
Q ss_pred ------CCCChHHHHHhhh---h-hcCCCcEEEEEEeCCCccccc---cCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 ------KSSSILPFLFGLS---D-ILKMPEVGMIFISSTSPDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ------~~~~lL~~L~rl~---e-~~~~~~l~vI~Is~~~~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+..++...|..+. + .....++.||+++|.+ +.+. .|.+.+ ...|+||+++.++..+|+..
T Consensus 241 ~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~-~~ld~allRpgRf-d~~I~v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 241 TDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI-DILDPAILRPGRF-DRIIEVPLPDEEGRLEILKI 313 (389)
T ss_pred ccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh-hhCCHHHcCCccC-ceEEEECCCCHHHHHHHHHH
Confidence 0112222222222 1 1112367888888764 2222 232322 24799999999999999964
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-10 Score=117.01 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=108.7
Q ss_pred hhcCCChHHHHHHHHHHHcccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~ 125 (537)
.+.+-|=++||++|...+.-.. .+..-+++|||||||||.++++|+++.+..|+.|...+
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE--------- 220 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE--------- 220 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH---------
Confidence 4678999999999999876543 12234999999999999999999999998888887643
Q ss_pred HHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc--
Q 009352 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-- 203 (537)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~-- 203 (537)
+++...|. | . . +...++...+ .+.+.||++||+|.+...
T Consensus 221 -lVqKYiGE------G--a--------R-------lVRelF~lAr---------------ekaPsIIFiDEIDAIg~kR~ 261 (406)
T COG1222 221 -LVQKYIGE------G--A--------R-------LVRELFELAR---------------EKAPSIIFIDEIDAIGAKRF 261 (406)
T ss_pred -HHHHHhcc------c--h--------H-------HHHHHHHHHh---------------hcCCeEEEEechhhhhcccc
Confidence 45555443 1 0 1 3333333332 346789999999999742
Q ss_pred CC--C------CChHHHHHhhhhhcCCCcEEEEEEeCCC--ccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 204 DK--S------SSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 204 d~--~------~~lL~~L~rl~e~~~~~~l~vI~Is~~~--~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
|. + .+++..|..|--+-+..|+.||+.+|-+ .|+-+-|.|. ....|.||..+.+.-.+||.-
T Consensus 262 d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR-~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 262 DSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGR-FDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred cCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCc-ccceeecCCCCHHHHHHHHHH
Confidence 11 1 1233333333222234589999999874 2444445553 235999999999998888853
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.21 E-value=1.8e-10 Score=119.27 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=103.4
Q ss_pred hhcCCChHHHHHHHHHHHccc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 57 LSRFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.+.|.||++++..|..++... ..+.++++||||||||||++++.+.++++..+.++++.....
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-------------- 89 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-------------- 89 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC--------------
Confidence 356999999999998887642 123457999999999999999999999987766655422111
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
..+ +...+.. + +...||+|||+|.+.. ...+.+..+
T Consensus 90 -----------------~~~----l~~~l~~----l-----------------~~~~vl~IDEi~~l~~--~~~e~l~~~ 125 (328)
T PRK00080 90 -----------------PGD----LAAILTN----L-----------------EEGDVLFIDEIHRLSP--VVEEILYPA 125 (328)
T ss_pred -----------------hHH----HHHHHHh----c-----------------ccCCEEEEecHhhcch--HHHHHHHHH
Confidence 011 1112211 1 1245889999999853 123333322
Q ss_pred Hhhhhh--------------cCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhh
Q 009352 214 FGLSDI--------------LKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLY 274 (537)
Q Consensus 214 ~rl~e~--------------~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~ 274 (537)
+.-... ...|.+++|+.++... ..+.+|.+ ..+.|++|+.+|+.+||.+.. ....+-
T Consensus 126 ~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~----~~~~l~~~~~~e~~~il~~~~~~~~~~~~ 201 (328)
T PRK00080 126 MEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFG----IVQRLEFYTVEELEKIVKRSARILGVEID 201 (328)
T ss_pred HHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcC----eeeecCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 211100 0124567777766531 23344443 478999999999999996431 122344
Q ss_pred hHHHHHHhhccccccC
Q 009352 275 SSFLDIVLRPFCRITK 290 (537)
Q Consensus 275 ~~~~~~il~~~~~~~r 290 (537)
+..++.++..+.+..|
T Consensus 202 ~~~~~~ia~~~~G~pR 217 (328)
T PRK00080 202 EEGALEIARRSRGTPR 217 (328)
T ss_pred HHHHHHHHHHcCCCch
Confidence 4455555554444443
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.21 E-value=8.7e-11 Score=114.26 Aligned_cols=183 Identities=19% Similarity=0.328 Sum_probs=96.7
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC---CeEEEeccccCCHHHHHHHH---------
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTSCLSCYSPRILFESI--------- 127 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~---~~~~inc~~~~s~~~l~~~I--------- 127 (537)
|+||++++++|..++.. .+...++|+||.|+|||++++.+++.+.. ..+|+++.+-.+... +..+
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESS-LRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHH-HHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhH-HHHHHHHHHHHHH
Confidence 78999999999998875 23467999999999999999999999853 456666544332222 2222
Q ss_pred -HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccc-ccCC
Q 009352 128 -LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR-EWDK 205 (537)
Q Consensus 128 -l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~-~~d~ 205 (537)
...+....+. .+...... +........+..+++ .+.. .+..++|||||+|.+. ..+.
T Consensus 78 l~~~~~~~~~~--~~~~~~~~-~~~~~~~~~l~~~~~----~l~~--------------~~~~~iiviDe~~~~~~~~~~ 136 (234)
T PF01637_consen 78 LSEALGISIPS--ITLEKISK-DLSEDSFSALERLLE----KLKK--------------KGKKVIIVIDEFQYLAIASEE 136 (234)
T ss_dssp CHHHHHHHCCT--STTEEEEC-TS-GG-G--HHHHHH----HHHH--------------CHCCEEEEEETGGGGGBCTTT
T ss_pred HHHHHhhhccc--ccchhhhh-cchhhHHHHHHHHHH----HHHh--------------cCCcEEEEEecHHHHhhcccc
Confidence 1222211111 00000000 111111222333333 2221 2233899999999998 3222
Q ss_pred CCChHHHHHhhhhh-cCCCcEEEEEEeCCC--ccccccCCC--CCCCceeecCCCCHHHHHHHHHh
Q 009352 206 SSSILPFLFGLSDI-LKMPEVGMIFISSTS--PDTYHSNTG--YVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 206 ~~~lL~~L~rl~e~-~~~~~l~vI~Is~~~--~~~f~~r~~--~~~p~~I~FppYt~~el~~IL~~ 266 (537)
...++..|..+.+. ....++++|++++.. ...+..... ......++++|++++|..+++..
T Consensus 137 ~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~ 202 (234)
T PF01637_consen 137 DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKE 202 (234)
T ss_dssp THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHH
Confidence 35667777776554 223578888877652 122221111 11123599999999999999964
No 13
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.21 E-value=8.3e-11 Score=104.52 Aligned_cols=115 Identities=23% Similarity=0.422 Sum_probs=81.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc--------CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCch
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL--------SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPS 152 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l--------~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~ 152 (537)
...++|+|++|+|||++++.+++.+ ..++++++|....+++.+++.|++++...... ..+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~~~ 73 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----------RQTSD 73 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------TS-HH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------cCCHH
Confidence 4579999999999999999999987 67889999999999999999999999643211 12233
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeC
Q 009352 153 DFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISS 232 (537)
Q Consensus 153 ~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~ 232 (537)
++...+.+.+ + .....+|||||+|.|. + .+++..|..+.+ ..++++|++++
T Consensus 74 ~l~~~~~~~l-------~---------------~~~~~~lviDe~~~l~--~--~~~l~~l~~l~~---~~~~~vvl~G~ 124 (131)
T PF13401_consen 74 ELRSLLIDAL-------D---------------RRRVVLLVIDEADHLF--S--DEFLEFLRSLLN---ESNIKVVLVGT 124 (131)
T ss_dssp HHHHHHHHHH-------H---------------HCTEEEEEEETTHHHH--T--HHHHHHHHHHTC---SCBEEEEEEES
T ss_pred HHHHHHHHHH-------H---------------hcCCeEEEEeChHhcC--C--HHHHHHHHHHHh---CCCCeEEEEEC
Confidence 3233222222 1 1234799999999984 2 466777766666 36899999998
Q ss_pred CC
Q 009352 233 TS 234 (537)
Q Consensus 233 ~~ 234 (537)
..
T Consensus 125 ~~ 126 (131)
T PF13401_consen 125 PE 126 (131)
T ss_dssp ST
T ss_pred hh
Confidence 73
No 14
>PRK04195 replication factor C large subunit; Provisional
Probab=99.19 E-value=2.6e-10 Score=124.06 Aligned_cols=187 Identities=11% Similarity=0.122 Sum_probs=116.8
Q ss_pred hcCCChHHHHHHHHHHHcccCC--CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 58 SRFPGRRVQILELLRLLGTLNS--SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~--~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
+.+.|+++.+.+|..++..... +.++++||||||||||+++++++++++..++.+|+.+..+...+ ..++......
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i-~~~i~~~~~~- 91 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVI-ERVAGEAATS- 91 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHH-HHHHHHhhcc-
Confidence 3478899999999998865433 24569999999999999999999999999999998765543322 1221111000
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
. . ++ .....+|||||+|.|.... ....+..|.+
T Consensus 92 -------~---------s-------l~-----------------------~~~~kvIiIDEaD~L~~~~-d~~~~~aL~~ 124 (482)
T PRK04195 92 -------G---------S-------LF-----------------------GARRKLILLDEVDGIHGNE-DRGGARAILE 124 (482)
T ss_pred -------C---------c-------cc-----------------------CCCCeEEEEecCccccccc-chhHHHHHHH
Confidence 0 0 00 0134688999999996411 1234566777
Q ss_pred hhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccCC-H
Q 009352 216 LSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITKR-V 292 (537)
Q Consensus 216 l~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r~-l 292 (537)
+.+. ++..+|+++|.....-. +.-......|.|++++.+++..+|.... ....+.+..++.++....+..|. +
T Consensus 125 ~l~~---~~~~iIli~n~~~~~~~-k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 125 LIKK---AKQPIILTANDPYDPSL-RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HHHc---CCCCEEEeccCccccch-hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 6653 35678889987542211 0101122589999999999999985422 12234455566666555444443 3
Q ss_pred HHHHH
Q 009352 293 DELST 297 (537)
Q Consensus 293 ~~L~~ 297 (537)
+.|+.
T Consensus 201 n~Lq~ 205 (482)
T PRK04195 201 NDLQA 205 (482)
T ss_pred HHHHH
Confidence 44443
No 15
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.19 E-value=2.4e-10 Score=116.92 Aligned_cols=170 Identities=17% Similarity=0.221 Sum_probs=101.0
Q ss_pred hcCCChHHHHHHHHHHHcccC---CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLN---SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~---~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.|.||++++.+|..++.... ...++++||||||||||++++.+.++++..+.++++.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--------------- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--------------- 68 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC---------------
Confidence 569999999999998886421 12356999999999999999999999886654443221110
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
..+ +...+.. + +...+|+|||+|.+.+. ..+. |+
T Consensus 69 ----------------~~~----l~~~l~~----~-----------------~~~~vl~iDEi~~l~~~--~~e~---l~ 102 (305)
T TIGR00635 69 ----------------PGD----LAAILTN----L-----------------EEGDVLFIDEIHRLSPA--VEEL---LY 102 (305)
T ss_pred ----------------chh----HHHHHHh----c-----------------ccCCEEEEehHhhhCHH--HHHH---hh
Confidence 011 1112211 1 12358899999998641 1222 22
Q ss_pred hhhhh-----------------cCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--Chh
Q 009352 215 GLSDI-----------------LKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQK 272 (537)
Q Consensus 215 rl~e~-----------------~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~ 272 (537)
.+.+- ...|.+++|.+++..+ ..+.+|.+ ..+.|++|+.+|+.+||.+... ...
T Consensus 103 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~----~~~~l~~l~~~e~~~il~~~~~~~~~~ 178 (305)
T TIGR00635 103 PAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFG----IILRLEFYTVEELAEIVSRSAGLLNVE 178 (305)
T ss_pred HHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcc----eEEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 22110 0123466666665532 23334442 4789999999999999963211 223
Q ss_pred hhhHHHHHHhhccccccCCH
Q 009352 273 LYSSFLDIVLRPFCRITKRV 292 (537)
Q Consensus 273 l~~~~~~~il~~~~~~~r~l 292 (537)
+.+..++.++....++.|.+
T Consensus 179 ~~~~al~~ia~~~~G~pR~~ 198 (305)
T TIGR00635 179 IEPEAALEIARRSRGTPRIA 198 (305)
T ss_pred cCHHHHHHHHHHhCCCcchH
Confidence 44555556655555555543
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.19 E-value=3.2e-10 Score=116.00 Aligned_cols=181 Identities=18% Similarity=0.252 Sum_probs=110.4
Q ss_pred cccCCCCChhHHhh--cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHH
Q 009352 45 VFGQEPISLDDLLS--RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRI 122 (537)
Q Consensus 45 ~f~~~~~~~~~l~~--~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~ 122 (537)
.-+.+|.+++++.. .+.|-..- |.+++.. ...+++++||||||||||+++.+....+..|..+|+....
T Consensus 15 A~rmRP~~lde~vGQ~HLlg~~~~---lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---- 85 (436)
T COG2256 15 AERLRPKSLDEVVGQEHLLGEGKP---LRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---- 85 (436)
T ss_pred HHHhCCCCHHHhcChHhhhCCCch---HHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc----
Confidence 44566777776542 33333333 4444543 2356899999999999999999999999999998864311
Q ss_pred HHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccc
Q 009352 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (537)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~ 202 (537)
+..++++++..-... ..++.+||+|||++++-+
T Consensus 86 --------------------------------vkdlr~i~e~a~~~~---------------~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 86 --------------------------------VKDLREIIEEARKNR---------------LLGRRTILFLDEIHRFNK 118 (436)
T ss_pred --------------------------------HHHHHHHHHHHHHHH---------------hcCCceEEEEehhhhcCh
Confidence 112555655432211 135788999999999965
Q ss_pred cCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcccccc-CCC-CCCCceeecCCCCHHHHHHHHHhcC--CChh------
Q 009352 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHS-NTG-YVAPIHVYFPECTEDDLRQIFMRNQ--ANQK------ 272 (537)
Q Consensus 203 ~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~-r~~-~~~p~~I~FppYt~~el~~IL~~~r--~~~~------ 272 (537)
..++.| +-. +.+=.||||+.+...+++. +.. ......+.|.|.+.+++.++|.+.. ...+
T Consensus 119 --~QQD~l---Lp~-----vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~ 188 (436)
T COG2256 119 --AQQDAL---LPH-----VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQII 188 (436)
T ss_pred --hhhhhh---hhh-----hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccc
Confidence 335532 211 2345667776655433321 100 1122578899999999999997621 1222
Q ss_pred -hhhHHHHHHhhccccccCC
Q 009352 273 -LYSSFLDIVLRPFCRITKR 291 (537)
Q Consensus 273 -l~~~~~~~il~~~~~~~r~ 291 (537)
+-++.++.++....++.|.
T Consensus 189 ~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 189 VLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred cCCHHHHHHHHHhcCchHHH
Confidence 2345556666666666665
No 17
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.18 E-value=1.3e-10 Score=111.68 Aligned_cols=155 Identities=22% Similarity=0.289 Sum_probs=86.0
Q ss_pred cCCCCChhHHhhcCCChHHHHHHHHHHHcccC---CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHH
Q 009352 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLN---SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRIL 123 (537)
Q Consensus 47 ~~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~---~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l 123 (537)
..+|.++ ++|+|-++.+..+.-++.... +..+++++|||||+||||+++.+.++++..+.+.+.....
T Consensus 17 ~lRP~~L----~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~----- 87 (233)
T PF05496_consen 17 RLRPKSL----DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE----- 87 (233)
T ss_dssp HTS-SSC----CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-------
T ss_pred hcCCCCH----HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh-----
Confidence 3445444 468899999998887776432 2456799999999999999999999999888777652211
Q ss_pred HHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc
Q 009352 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (537)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~ 203 (537)
...+ +..++.. + ++..||++||+++|-.
T Consensus 88 --------------------------k~~d----l~~il~~----l-----------------~~~~ILFIDEIHRlnk- 115 (233)
T PF05496_consen 88 --------------------------KAGD----LAAILTN----L-----------------KEGDILFIDEIHRLNK- 115 (233)
T ss_dssp --------------------------SCHH----HHHHHHT-----------------------TT-EEEECTCCC--H-
T ss_pred --------------------------hHHH----HHHHHHh----c-----------------CCCcEEEEechhhccH-
Confidence 1122 2222221 1 1234899999999975
Q ss_pred CCCCChHHHHHhhhhh--c------------CCCcEEEEEEeCCC---ccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 204 DKSSSILPFLFGLSDI--L------------KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 204 d~~~~lL~~L~rl~e~--~------------~~~~l~vI~Is~~~---~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
..+++|+..+.=..+ . ++|..++|..++.. ..++..|.| ...++.-|+.+|+.+|+.+
T Consensus 116 -~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFg----i~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 116 -AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFG----IVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp -HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSS----EEEE----THHHHHHHHHH
T ss_pred -HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcc----eecchhcCCHHHHHHHHHH
Confidence 235555444321111 0 13456677765542 244555554 4567888999999999965
Q ss_pred c
Q 009352 267 N 267 (537)
Q Consensus 267 ~ 267 (537)
.
T Consensus 191 ~ 191 (233)
T PF05496_consen 191 S 191 (233)
T ss_dssp C
T ss_pred H
Confidence 4
No 18
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.4e-10 Score=123.60 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=120.4
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
.+.|-+..+..|...+... ..++ +++|||+|||||++++.+++.+... .....|..|.+-+.+...+...+...
T Consensus 19 dvVGQe~iv~~L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI- 95 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI- 95 (484)
T ss_pred HHhChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee-
Confidence 4677788889898888762 2343 8999999999999999999998742 12335777777555443322222111
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
++.+ ... ++.++++.+.+... ...++..|+||||+|.|.. +.+.+|++
T Consensus 96 ----daas----~~g----Vd~IReL~e~l~~~---------------p~~g~~KV~IIDEah~Ls~-----~A~NALLK 143 (484)
T PRK14956 96 ----DAAS----NRG----IENIRELRDNVKFA---------------PMGGKYKVYIIDEVHMLTD-----QSFNALLK 143 (484)
T ss_pred ----chhh----ccc----HHHHHHHHHHHHhh---------------hhcCCCEEEEEechhhcCH-----HHHHHHHH
Confidence 0000 001 22244444332210 0123456889999999953 44667777
Q ss_pred hhhhcCCCcEEEEEEeCCC---ccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccC
Q 009352 216 LSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 216 l~e~~~~~~l~vI~Is~~~---~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r 290 (537)
..|-.+ .++.+|++++.. +..+.+|. ..++|.+++.+++.+.|.... ....+-+..+..+.....+..|
T Consensus 144 tLEEPp-~~viFILaTte~~kI~~TI~SRC-----q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 144 TLEEPP-AHIVFILATTEFHKIPETILSRC-----QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HhhcCC-CceEEEeecCChhhccHHHHhhh-----heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHH
Confidence 766543 467777777662 23344443 589999999999998885321 2234456677777777777777
Q ss_pred C-HHHH
Q 009352 291 R-VDEL 295 (537)
Q Consensus 291 ~-l~~L 295 (537)
+ +..|
T Consensus 218 dAL~lL 223 (484)
T PRK14956 218 DMLSFM 223 (484)
T ss_pred HHHHHH
Confidence 7 3444
No 19
>PLN03025 replication factor C subunit; Provisional
Probab=99.18 E-value=5.6e-10 Score=115.16 Aligned_cols=187 Identities=16% Similarity=0.164 Sum_probs=110.1
Q ss_pred CCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-----CeEEEeccccCCHHHH
Q 009352 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-----PFVYTSCLSCYSPRIL 123 (537)
Q Consensus 49 ~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~-----~~~~inc~~~~s~~~l 123 (537)
+|.++++ +.|.++.+..|..++.. ...|++++|||||||||++++.+++++.. .+..+|+.+....
T Consensus 8 rP~~l~~----~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~--- 78 (319)
T PLN03025 8 RPTKLDD----IVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI--- 78 (319)
T ss_pred CCCCHHH----hcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccH---
Confidence 4555544 56778888888888765 34567999999999999999999998731 1222232221111
Q ss_pred HHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc
Q 009352 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (537)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~ 203 (537)
+.+++.+..+.... . ....++.-|+||||+|.+..
T Consensus 79 --------------------------------~~vr~~i~~~~~~~------~------~~~~~~~kviiiDE~d~lt~- 113 (319)
T PLN03025 79 --------------------------------DVVRNKIKMFAQKK------V------TLPPGRHKIVILDEADSMTS- 113 (319)
T ss_pred --------------------------------HHHHHHHHHHHhcc------c------cCCCCCeEEEEEechhhcCH-
Confidence 11222222111100 0 00123456889999999964
Q ss_pred CCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHH
Q 009352 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIV 281 (537)
Q Consensus 204 d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~i 281 (537)
. --.+|.+..|..+ ....+|+++|..+ ++.....++ ...+.|++++.+|+.++|.... ....+.+..++.+
T Consensus 114 -~---aq~aL~~~lE~~~-~~t~~il~~n~~~-~i~~~L~SR-c~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i 186 (319)
T PLN03025 114 -G---AQQALRRTMEIYS-NTTRFALACNTSS-KIIEPIQSR-CAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAI 186 (319)
T ss_pred -H---HHHHHHHHHhccc-CCceEEEEeCCcc-ccchhHHHh-hhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 1 1345667667642 3567888887642 332211111 1479999999999999985421 1223455666777
Q ss_pred hhccccccCC-HHHHH
Q 009352 282 LRPFCRITKR-VDELS 296 (537)
Q Consensus 282 l~~~~~~~r~-l~~L~ 296 (537)
+....+..|. +++|+
T Consensus 187 ~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 187 IFTADGDMRQALNNLQ 202 (319)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 6666655554 45555
No 20
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.17 E-value=2.2e-10 Score=121.90 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=99.4
Q ss_pred hcCCChHHHHHHHHHHHcccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|.+.|+.+|...+.... .+...++||||||||||++++++..++...++.+++.+..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~-------- 254 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI-------- 254 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh--------
Confidence 456899999999998875321 1233599999999999999999999998888877654321
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
+...+. + ...++.++.. .+ .+.+.||+|||+|.+....
T Consensus 255 --~k~~Ge--------~-----------~~~vr~lF~~----A~---------------~~~P~ILfIDEID~l~~kR~~ 294 (438)
T PTZ00361 255 --QKYLGD--------G-----------PKLVRELFRV----AE---------------ENAPSIVFIDEIDAIGTKRYD 294 (438)
T ss_pred --hhhcch--------H-----------HHHHHHHHHH----HH---------------hCCCcEEeHHHHHHHhccCCC
Confidence 111111 0 0113333322 11 2357899999999986321
Q ss_pred ---CC-C----ChHHHHHhhhhhcCCCcEEEEEEeCCCccccc---cCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 205 ---KS-S----SILPFLFGLSDILKMPEVGMIFISSTSPDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 205 ---~~-~----~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
++ . .++..|..+.......++.||+++|.+ +.+. .|.+ +....|+|++|+.++..+|+...
T Consensus 295 ~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~-d~LDpaLlRpG-Rfd~~I~~~~Pd~~~R~~Il~~~ 366 (438)
T PTZ00361 295 ATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI-ESLDPALIRPG-RIDRKIEFPNPDEKTKRRIFEIH 366 (438)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh-HHhhHHhccCC-eeEEEEEeCCCCHHHHHHHHHHH
Confidence 00 1 123333333322223468888888763 3332 2333 22358999999999999999643
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.17 E-value=5.5e-10 Score=115.68 Aligned_cols=212 Identities=15% Similarity=0.174 Sum_probs=113.6
Q ss_pred CCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHH
Q 009352 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRIL 123 (537)
Q Consensus 49 ~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~s~~~l 123 (537)
.|.+++ .+.|++..+++|..++... ..++++||||+|||||++++.+.+.+. .+++++||.+....
T Consensus 10 ~P~~~~----~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~--- 80 (337)
T PRK12402 10 RPALLE----DILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ--- 80 (337)
T ss_pred CCCcHH----HhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc---
Confidence 454544 4679999999999988752 335799999999999999999999874 35678887653210
Q ss_pred HHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc
Q 009352 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (537)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~ 203 (537)
....+..+ +....-+...++- . ......++.++....... ......-+|||||+|.+.+
T Consensus 81 ---~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~vlilDe~~~l~~- 139 (337)
T PRK12402 81 ---GKKYLVED-PRFAHFLGTDKRI-R-SSKIDNFKHVLKEYASYR--------------PLSADYKTILLDNAEALRE- 139 (337)
T ss_pred ---chhhhhcC-cchhhhhhhhhhh-c-cchHHHHHHHHHHHHhcC--------------CCCCCCcEEEEeCcccCCH-
Confidence 00111000 0000000000000 0 001122222222211100 0012345889999998853
Q ss_pred CCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHH
Q 009352 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIV 281 (537)
Q Consensus 204 d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~i 281 (537)
+....|.++.+..+ .+..+|++++.+ ..+.....++ ...+.|+|++.+|+.++|.... ....+.+..++.+
T Consensus 140 ----~~~~~L~~~le~~~-~~~~~Il~~~~~-~~~~~~L~sr-~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l 212 (337)
T PRK12402 140 ----DAQQALRRIMEQYS-RTCRFIIATRQP-SKLIPPIRSR-CLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELI 212 (337)
T ss_pred ----HHHHHHHHHHHhcc-CCCeEEEEeCCh-hhCchhhcCC-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23445666655432 346677777653 2332222222 2589999999999999996421 1223445555555
Q ss_pred hhccccccCCHHHHHHHHH
Q 009352 282 LRPFCRITKRVDELSTAFS 300 (537)
Q Consensus 282 l~~~~~~~r~l~~L~~~~~ 300 (537)
+... .+|+..+...+.
T Consensus 213 ~~~~---~gdlr~l~~~l~ 228 (337)
T PRK12402 213 AYYA---GGDLRKAILTLQ 228 (337)
T ss_pred HHHc---CCCHHHHHHHHH
Confidence 5444 345555544433
No 22
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.17 E-value=1.2e-09 Score=109.43 Aligned_cols=188 Identities=14% Similarity=0.156 Sum_probs=101.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC-CeEEEe-ccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR-PFVYTS-CLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFV 158 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~-~~~~in-c~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L 158 (537)
.+.++|+|++|+|||++++.+++.+.. .+..+. +....++..++..|+..+... . .+ .........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~-~---~~-------~~~~~~~~~l 111 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLE-T---EG-------RDKAALLREL 111 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCC-C---CC-------CCHHHHHHHH
Confidence 346899999999999999999998863 222211 112346677888887766321 1 11 1111222222
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcC--CCcEEEEEEeCCCcc
Q 009352 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK--MPEVGMIFISSTSPD 236 (537)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~--~~~l~vI~Is~~~~~ 236 (537)
...+... . ..+++.+|||||+|.+.. ..+..|..+.+... ...+.||+++.....
T Consensus 112 ~~~l~~~---~---------------~~~~~~vliiDe~~~l~~-----~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~ 168 (269)
T TIGR03015 112 EDFLIEQ---F---------------AAGKRALLVVDEAQNLTP-----ELLEELRMLSNFQTDNAKLLQIFLVGQPEFR 168 (269)
T ss_pred HHHHHHH---H---------------hCCCCeEEEEECcccCCH-----HHHHHHHHHhCcccCCCCeEEEEEcCCHHHH
Confidence 2222211 1 134568999999999853 22344433433321 223556666553211
Q ss_pred cccc-----CCCCCCCceeecCCCCHHHHHHHHHhcC--C----ChhhhhHHHHHHhhccccccCCHHHHHHHHHHhhhh
Q 009352 237 TYHS-----NTGYVAPIHVYFPECTEDDLRQIFMRNQ--A----NQKLYSSFLDIVLRPFCRITKRVDELSTAFSLLFKR 305 (537)
Q Consensus 237 ~f~~-----r~~~~~p~~I~FppYt~~el~~IL~~~r--~----~~~l~~~~~~~il~~~~~~~r~l~~L~~~~~~lw~~ 305 (537)
..+. ....+....+++++++.+|+.+++.... . ...|.+..++.+++...+..+.+ ...|..+|..
T Consensus 169 ~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i---~~l~~~~~~~ 245 (269)
T TIGR03015 169 ETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLI---NILCDRLLLS 245 (269)
T ss_pred HHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHH---HHHHHHHHHH
Confidence 1111 1112223578999999999999985321 1 12355556666666555555544 4444444443
No 23
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.14 E-value=1.5e-10 Score=102.69 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=68.1
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHH
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALI 163 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~ 163 (537)
|+||||||||||++++.+++.++.++++++|.+..+. ...+....+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~-----------------------------~~~~~~~~i~~~~~ 51 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISS-----------------------------YAGDSEQKIRDFFK 51 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTS-----------------------------STTHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccc-----------------------------cccccccccccccc
Confidence 6899999999999999999999999999998664321 01122223444444
Q ss_pred HHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC------CCCChHHHHHhhhhhcCC--CcEEEEEEeCC
Q 009352 164 NVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD------KSSSILPFLFGLSDILKM--PEVGMIFISST 233 (537)
Q Consensus 164 ~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d------~~~~lL~~L~rl~e~~~~--~~l~vI~Is~~ 233 (537)
.... ..++.||+|||+|.+.... ....++..|....+.... .++.+|+.++.
T Consensus 52 ~~~~------------------~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 52 KAKK------------------SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHHH------------------TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccc------------------cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 3211 1236899999999997532 012345666665444322 35889999988
No 24
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.14 E-value=4.4e-11 Score=112.54 Aligned_cols=75 Identities=28% Similarity=0.419 Sum_probs=47.0
Q ss_pred cCCChHHHHHHHHHHHcccCC-CCCCeEEECCCCCCHHHHHHHHHHhcCCC---eEEEeccccC-----CHHHHHHHHHH
Q 009352 59 RFPGRRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRHLSRP---FVYTSCLSCY-----SPRILFESILN 129 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~-~~~~l~I~G~~GtGKTsiv~~vl~~l~~~---~~~inc~~~~-----s~~~l~~~Il~ 129 (537)
+|+||++|+++|..++..... ..++++|+|++|+|||++++.+++.+... +++++|.... +.+.++..++.
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSERNPYSPFRSALRQLID 80 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTTS-HHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccccchhhHHHHHHHHHHH
Confidence 489999999999999962222 34679999999999999999999877543 7778887662 12555666655
Q ss_pred HHhh
Q 009352 130 QLLL 133 (537)
Q Consensus 130 ~L~~ 133 (537)
++..
T Consensus 81 ~~~~ 84 (185)
T PF13191_consen 81 QLLD 84 (185)
T ss_dssp ----
T ss_pred Hhhc
Confidence 5443
No 25
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.13 E-value=7.2e-10 Score=119.72 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=98.7
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCC--------eEEEeccccC
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRP--------FVYTSCLSCY 118 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~--------~~~inc~~~~ 118 (537)
+.+.|.+.++.+|...+... ..+...+++|||||||||++++++++++..+ ..+++|...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 45778999999998876321 1233459999999999999999999998643 334443220
Q ss_pred CHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCC
Q 009352 119 SPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFE 198 (537)
Q Consensus 119 s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D 198 (537)
.+++...+ +....++.+++...... ..+.++||+|||+|
T Consensus 261 -------eLl~kyvG-------------------ete~~ir~iF~~Ar~~a---------------~~g~p~IIfIDEiD 299 (512)
T TIGR03689 261 -------ELLNKYVG-------------------ETERQIRLIFQRAREKA---------------SDGRPVIVFFDEMD 299 (512)
T ss_pred -------hhcccccc-------------------hHHHHHHHHHHHHHHHh---------------hcCCCceEEEehhh
Confidence 11111110 11112333443322110 13468999999999
Q ss_pred cccccCC---CC----ChHHHHHhhhhhc-CCCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 199 LVREWDK---SS----SILPFLFGLSDIL-KMPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 199 ~L~~~d~---~~----~lL~~L~rl~e~~-~~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.+..... .. .+++.|+...+-. ...++.||..+|. ++.+++ |.| +...+|+|++++.++..+|+..
T Consensus 300 ~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~-~d~LDpALlRpG-RfD~~I~~~~Pd~e~r~~Il~~ 376 (512)
T TIGR03689 300 SIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNR-EDMIDPAILRPG-RLDVKIRIERPDAEAAADIFSK 376 (512)
T ss_pred hhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCC-hhhCCHhhcCcc-ccceEEEeCCCCHHHHHHHHHH
Confidence 9963211 11 2455665543322 1246777777765 344433 322 3345899999999999999954
No 26
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.13 E-value=9.9e-10 Score=115.41 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=96.7
Q ss_pred HhhcCCChHHHHHHHHHHHcccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009352 56 LLSRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~ 124 (537)
..+.+.|+++|+++|..++.... .+...++||||||||||++++++.++++..++.+.+.+ +
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~------l- 192 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE------L- 192 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHH------H-
Confidence 34678999999999998874321 12234999999999999999999999988877665422 1
Q ss_pred HHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
.....+. ....++.++.. .+ ...+.||+|||+|.+....
T Consensus 193 ---~~~~~g~-------------------~~~~i~~~f~~----a~---------------~~~p~il~iDEiD~l~~~~ 231 (364)
T TIGR01242 193 ---VRKYIGE-------------------GARLVREIFEL----AK---------------EKAPSIIFIDEIDAIAAKR 231 (364)
T ss_pred ---HHHhhhH-------------------HHHHHHHHHHH----HH---------------hcCCcEEEhhhhhhhcccc
Confidence 1111110 01112223321 11 2346799999999985321
Q ss_pred ------CCCC---hHHHHHhhhh-hcCCCcEEEEEEeCCCccccc---cCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 ------KSSS---ILPFLFGLSD-ILKMPEVGMIFISSTSPDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ------~~~~---lL~~L~rl~e-~~~~~~l~vI~Is~~~~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.... .+..++...+ +....++.||+++|.+ +.+. .+.+.. ...|+|+.|+.++..+|+..
T Consensus 232 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~-~~ld~al~r~grf-d~~i~v~~P~~~~r~~Il~~ 304 (364)
T TIGR01242 232 TDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRP-DILDPALLRPGRF-DRIIEVPLPDFEGRLEILKI 304 (364)
T ss_pred ccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh-hhCChhhcCcccC-ceEEEeCCcCHHHHHHHHHH
Confidence 0011 1222222111 2112468888888764 2222 222222 24799999999999999964
No 27
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=4.6e-10 Score=124.09 Aligned_cols=194 Identities=13% Similarity=0.151 Sum_probs=116.3
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+++.|.+..++.|...+... ..++ +++||++|||||++++.+.+.+.... -...|..|.+-+.+.+.-...+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE- 92 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE- 92 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE-
Confidence 35778899999999988652 2344 68999999999999999999986421 112466665533321110000000
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
.++.+ . .. ++.++.+++..... ...++.-|+||||+|.|.. .-...|+
T Consensus 93 ----IDAas--~--rg----VDdIReLIe~a~~~---------------P~~gr~KVIIIDEah~LT~-----~A~NALL 140 (830)
T PRK07003 93 ----MDAAS--N--RG----VDEMAALLERAVYA---------------PVDARFKVYMIDEVHMLTN-----HAFNAML 140 (830)
T ss_pred ----ecccc--c--cc----HHHHHHHHHHHHhc---------------cccCCceEEEEeChhhCCH-----HHHHHHH
Confidence 00000 0 01 22344444432210 0123445888999999953 3456777
Q ss_pred hhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhcccccc
Q 009352 215 GLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCRIT 289 (537)
Q Consensus 215 rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~~~ 289 (537)
+..|-.+ .++.+||+++... ..+.+|. ..+.|.+++.+|+.++|..... ...+.++.+..+.....+.-
T Consensus 141 KtLEEPP-~~v~FILaTtd~~KIp~TIrSRC-----q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 141 KTLEEPP-PHVKFILATTDPQKIPVTVLSRC-----LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred HHHHhcC-CCeEEEEEECChhhccchhhhhe-----EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 8766643 5799999998742 3334443 6899999999999988854221 22344556666666666666
Q ss_pred CCH
Q 009352 290 KRV 292 (537)
Q Consensus 290 r~l 292 (537)
|+.
T Consensus 215 RdA 217 (830)
T PRK07003 215 RDA 217 (830)
T ss_pred HHH
Confidence 663
No 28
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.10 E-value=1.4e-09 Score=108.99 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=76.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC-------CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS-------RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~-------~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (537)
+++++|||||||||++++.+.+.+. ..+++++|.+ +.....+. .
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~----------l~~~~~g~---------------~---- 93 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD----------LVGEYIGH---------------T---- 93 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH----------hhhhhccc---------------h----
Confidence 4689999999999999999988652 1444444432 11111111 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---CCCChHHHHHhhhhhcCCCcEEEEEEe
Q 009352 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---KSSSILPFLFGLSDILKMPEVGMIFIS 231 (537)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d---~~~~lL~~L~rl~e~~~~~~l~vI~Is 231 (537)
...++++++. .. ..||+|||+|.|.... ...+.+..|++..|-.. .++.+|+++
T Consensus 94 ~~~~~~~~~~--------------------a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-~~~~vila~ 150 (261)
T TIGR02881 94 AQKTREVIKK--------------------AL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-NEFVLILAG 150 (261)
T ss_pred HHHHHHHHHh--------------------cc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-CCEEEEecC
Confidence 1112233321 11 2488999999996311 11235666666655432 346666665
Q ss_pred CCCc-cccc---cCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 232 STSP-DTYH---SNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 232 ~~~~-~~f~---~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.... +.++ +...++.+..|+||+|+.+|+.+|+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHH
Confidence 4321 2221 22223345689999999999999995
No 29
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.09 E-value=1.5e-09 Score=110.06 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=79.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC-------CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS-------RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~-------~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (537)
.+++++||||||||++++.+.+.+. .++++++|.+ ++..+.++ + ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~----------l~~~~~g~--------~-------~~-- 111 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD----------LVGQYIGH--------T-------AP-- 111 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH----------HhHhhccc--------c-------hH--
Confidence 4699999999999999988887653 2577777522 22223221 1 00
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc----CCCCChHHHHHhhhhhcCCCcEEEEEE
Q 009352 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW----DKSSSILPFLFGLSDILKMPEVGMIFI 230 (537)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~----d~~~~lL~~L~rl~e~~~~~~l~vI~I 230 (537)
..+++++.. . .-+|+|||++.|... +.+.++...|+.+.+.. ..++.||+.
T Consensus 112 --~~~~~~~~a--------------------~--~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~-~~~~~vI~a 166 (284)
T TIGR02880 112 --KTKEILKRA--------------------M--GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ-RDDLVVILA 166 (284)
T ss_pred --HHHHHHHHc--------------------c--CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC-CCCEEEEEe
Confidence 122233220 1 248899999998321 11234555666665543 246777776
Q ss_pred eCCC-ccccc---cCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 231 SSTS-PDTYH---SNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 231 s~~~-~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
++.. .+.|+ +...++.+..|+||+|+.+|+.+|+.
T Consensus 167 ~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~ 205 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAG 205 (284)
T ss_pred CCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHH
Confidence 6543 24443 11123445789999999999999985
No 30
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.09 E-value=2.5e-09 Score=109.82 Aligned_cols=175 Identities=11% Similarity=0.114 Sum_probs=102.9
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-----CeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-----PFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~-----~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.+.|+++.+..|..++.. ...++++||||+|||||++++.+++++.. .++.+++........
T Consensus 18 ~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~----------- 84 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDV----------- 84 (319)
T ss_pred HhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHH-----------
Confidence 477999999999999865 23457999999999999999999998742 233333322111111
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
++..+..+.... .......-+|+|||+|.|.. +....|
T Consensus 85 ------------------------~~~~i~~~~~~~-------------~~~~~~~~vviiDe~~~l~~-----~~~~~L 122 (319)
T PRK00440 85 ------------------------IRNKIKEFARTA-------------PVGGAPFKIIFLDEADNLTS-----DAQQAL 122 (319)
T ss_pred ------------------------HHHHHHHHHhcC-------------CCCCCCceEEEEeCcccCCH-----HHHHHH
Confidence 111111111100 00112345888999999953 233456
Q ss_pred HhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccCC
Q 009352 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITKR 291 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r~ 291 (537)
.++.+... ++..+|++++.. ..+.....++ ...++|++++.+|+..++.... ....+.+..++.++....+..|.
T Consensus 123 ~~~le~~~-~~~~lIl~~~~~-~~l~~~l~sr-~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 123 RRTMEMYS-QNTRFILSCNYS-SKIIDPIQSR-CAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HHHHhcCC-CCCeEEEEeCCc-cccchhHHHH-hheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 66656542 467788887753 2222211111 1479999999999999985321 12235556666666554444443
No 31
>CHL00181 cbbX CbbX; Provisional
Probab=99.09 E-value=1.1e-09 Score=110.93 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=80.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC-------CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchh
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS-------RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSD 153 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~-------~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~ 153 (537)
+.+++++||||||||++++.+.+.+. .+++++++.+ ++..+.++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~----------l~~~~~g~~~----------------- 111 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD----------LVGQYIGHTA----------------- 111 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH----------HHHHHhccch-----------------
Confidence 34589999999999999999987652 1355565322 2222322110
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC----CCCChHHHHHhhhhhcCCCcEEEEE
Q 009352 154 FVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD----KSSSILPFLFGLSDILKMPEVGMIF 229 (537)
Q Consensus 154 f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d----~~~~lL~~L~rl~e~~~~~~l~vI~ 229 (537)
...+++++. .. .-||+|||+|.|...+ .+.+....|+.+.|-.. .++.||+
T Consensus 112 --~~~~~~l~~--------------------a~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-~~~~vI~ 166 (287)
T CHL00181 112 --PKTKEVLKK--------------------AM--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-DDLVVIF 166 (287)
T ss_pred --HHHHHHHHH--------------------cc--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 011223321 11 2489999999984211 22456677777655432 4677777
Q ss_pred EeCCCc-cccc---cCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 230 ISSTSP-DTYH---SNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 230 Is~~~~-~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.++... +.|+ +...++.+..|+|++|+.+|+.+|+..
T Consensus 167 ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~ 207 (287)
T CHL00181 167 AGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKI 207 (287)
T ss_pred eCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHH
Confidence 765422 3333 112234557999999999999999953
No 32
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.08 E-value=3e-09 Score=112.40 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=97.6
Q ss_pred hhcCCChHHHHHHHHHHHcccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~ 125 (537)
.+.+.|-+.|+.+|...+.... .+...+++|||||||||+++++++.+++..++.+.+.+.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l-------- 215 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF-------- 215 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH--------
Confidence 3568899999999888764211 123459999999999999999999999988888876321
Q ss_pred HHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc--
Q 009352 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-- 203 (537)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~-- 203 (537)
.....+. + ...++.++.. .+ ...+.||+|||+|.+...
T Consensus 216 --~~k~~ge--------~-----------~~~lr~lf~~----A~---------------~~~P~ILfIDEID~i~~~r~ 255 (398)
T PTZ00454 216 --VQKYLGE--------G-----------PRMVRDVFRL----AR---------------ENAPSIIFIDEVDSIATKRF 255 (398)
T ss_pred --HHHhcch--------h-----------HHHHHHHHHH----HH---------------hcCCeEEEEECHhhhccccc
Confidence 1111111 0 0113333332 11 235789999999998531
Q ss_pred CCC-------CChHHHHHhhhh-hcCCCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 204 DKS-------SSILPFLFGLSD-ILKMPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 204 d~~-------~~lL~~L~rl~e-~~~~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+.. +.++..|+...+ .....++.||+++|.+ +.+.+ |.| +....|+|+.++.++-.+|+..
T Consensus 256 ~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~-d~LDpAllR~G-Rfd~~I~~~~P~~~~R~~Il~~ 327 (398)
T PTZ00454 256 DAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA-DTLDPALLRPG-RLDRKIEFPLPDRRQKRLIFQT 327 (398)
T ss_pred cccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCc-hhCCHHHcCCC-cccEEEEeCCcCHHHHHHHHHH
Confidence 100 113333433322 2122457788877763 33332 322 2335899999999998888853
No 33
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.08 E-value=6.2e-10 Score=110.15 Aligned_cols=191 Identities=18% Similarity=0.210 Sum_probs=116.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNA 138 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~ 138 (537)
++.|-|..+.-|...+.. ...|++++|||||||||++++++.++|.. .+..--+ ++.. ....
T Consensus 37 e~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~-------~~~~~~r-----vl~l----naSd 98 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNC-------EQLFPCR-----VLEL----NASD 98 (346)
T ss_pred hhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcC-------ccccccc-----hhhh----cccc
Confidence 356668888888888766 34678999999999999999999999753 1111000 1111 1111
Q ss_pred cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhh
Q 009352 139 FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSD 218 (537)
Q Consensus 139 ~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e 218 (537)
+.|.+. -.++...|-. +... .. .+ .+++....-||||||+|.+.. +-..+|.|..|
T Consensus 99 erGisv--vr~Kik~fak----l~~~----~~-----~~----~~~~~~~fKiiIlDEcdsmts-----daq~aLrr~mE 154 (346)
T KOG0989|consen 99 ERGISV--VREKIKNFAK----LTVL----LK-----RS----DGYPCPPFKIIILDECDSMTS-----DAQAALRRTME 154 (346)
T ss_pred cccccc--hhhhhcCHHH----Hhhc----cc-----cc----cCCCCCcceEEEEechhhhhH-----HHHHHHHHHHh
Confidence 233321 0111111111 1100 00 00 012222346899999998863 44578888888
Q ss_pred hcCCCcEEEEEEeCCC---ccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccCC-H
Q 009352 219 ILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITKR-V 292 (537)
Q Consensus 219 ~~~~~~l~vI~Is~~~---~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r~-l 292 (537)
-.. .++.+|||+|.. +..+.+|. ..++|++...+.+++.|..-. ....+-.+.++.++....+.-|+ +
T Consensus 155 ~~s-~~trFiLIcnylsrii~pi~SRC-----~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ai 228 (346)
T KOG0989|consen 155 DFS-RTTRFILICNYLSRIIRPLVSRC-----QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAI 228 (346)
T ss_pred ccc-cceEEEEEcCChhhCChHHHhhH-----HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 753 468899999974 35555554 589999999999988885422 23455667778887777766666 3
Q ss_pred HHHHH
Q 009352 293 DELST 297 (537)
Q Consensus 293 ~~L~~ 297 (537)
..|+.
T Consensus 229 t~Lqs 233 (346)
T KOG0989|consen 229 TTLQS 233 (346)
T ss_pred HHHHH
Confidence 44443
No 34
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=6e-10 Score=116.92 Aligned_cols=195 Identities=11% Similarity=0.104 Sum_probs=112.2
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEE--EeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVY--TSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~~--inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
.+.|-+..+..|...+... ..++ ++++||+|+|||++++.+++.+.....+ -.|..|.+-+.+.....-.+...
T Consensus 17 ~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~- 93 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI- 93 (363)
T ss_pred hccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe-
Confidence 4678899999999888652 2344 6899999999999999999998632211 23777765444332211111100
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
++.+ -..+ +.++.+++.+.. ....++.-|+||||+|.+.+ .-..+|++
T Consensus 94 ----~~~~----~~~v----~~ir~i~~~~~~---------------~p~~~~~kviIIDEa~~l~~-----~a~naLLk 141 (363)
T PRK14961 94 ----DAAS----RTKV----EEMREILDNIYY---------------SPSKSRFKVYLIDEVHMLSR-----HSFNALLK 141 (363)
T ss_pred ----cccc----cCCH----HHHHHHHHHHhc---------------CcccCCceEEEEEChhhcCH-----HHHHHHHH
Confidence 0100 0112 223334432211 01123456889999999853 23456677
Q ss_pred hhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHhhccccccCC
Q 009352 216 LSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVLRPFCRITKR 291 (537)
Q Consensus 216 l~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il~~~~~~~r~ 291 (537)
..|-.+ +++.+|++++.. +.+.....++ ...+.|+|++.+|+.++|... .....+.+..++.++....+..|+
T Consensus 142 ~lEe~~-~~~~fIl~t~~~-~~l~~tI~SR-c~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 142 TLEEPP-QHIKFILATTDV-EKIPKTILSR-CLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHhcCC-CCeEEEEEcCCh-HhhhHHHHhh-ceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 666543 468888888763 3443322221 158999999999999998531 111224445555555544444444
No 35
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=1.6e-09 Score=116.93 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=111.9
Q ss_pred CCCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHH
Q 009352 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILF 124 (537)
Q Consensus 48 ~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~ 124 (537)
-+|.+++ .++|.+.....|...+... ..++ +++||||||||||+++.+++.+... ..+..|..|.+-..+-
T Consensus 8 yRP~~~~----divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 8 YRPKTFS----EVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred HCCCCHH----HccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 3555554 4777788888888877652 2344 7999999999999999999987631 1234566665433221
Q ss_pred HHHHHHHhhcccc--ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccc
Q 009352 125 ESILNQLLLHKKN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (537)
Q Consensus 125 ~~Il~~L~~~~~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~ 202 (537)
. +..+. ..++.+ ... +..++++.+.+... ...++..||||||+|.|..
T Consensus 82 ~-------g~~~dv~el~aa~----~~g----id~iR~i~~~~~~~---------------p~~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 82 E-------GTFMDVIELDAAS----NRG----IDEIRKIRDAVGYR---------------PMEGKYKVYIIDEVHMLTK 131 (472)
T ss_pred c-------CCCCccEEEeCcc----cCC----HHHHHHHHHHHhhC---------------hhcCCeEEEEEEChHHhHH
Confidence 1 00000 000000 011 22244333321110 0123456889999999953
Q ss_pred cCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHH
Q 009352 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDI 280 (537)
Q Consensus 203 ~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~ 280 (537)
+.+..|+...|..+ .++.+|++++. +..+.....++ ...+.|++++.+++..+|.... ....+.+..++.
T Consensus 132 -----~a~~~LLk~LE~p~-~~vv~Ilattn-~~kl~~~L~SR-~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~ 203 (472)
T PRK14962 132 -----EAFNALLKTLEEPP-SHVVFVLATTN-LEKVPPTIISR-CQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSF 203 (472)
T ss_pred -----HHHHHHHHHHHhCC-CcEEEEEEeCC-hHhhhHHHhcC-cEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 23445555555432 45777777764 33333322222 2589999999999999996422 122344555566
Q ss_pred HhhccccccCC
Q 009352 281 VLRPFCRITKR 291 (537)
Q Consensus 281 il~~~~~~~r~ 291 (537)
++....+..|+
T Consensus 204 Ia~~s~GdlR~ 214 (472)
T PRK14962 204 IAKRASGGLRD 214 (472)
T ss_pred HHHHhCCCHHH
Confidence 55554444443
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.01 E-value=1.1e-08 Score=104.86 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=104.2
Q ss_pred hHHhhcCCChHHHHHHHHHHHcccC------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 54 DDLLSRFPGRRVQILELLRLLGTLN------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 54 ~~l~~~~~~Re~qi~~L~~ll~~~~------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+++...+..=...++++...+.... .....+.||||||||||.++++++.+++..++.+++.+..+
T Consensus 115 ~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s-------- 186 (413)
T PLN00020 115 DNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES-------- 186 (413)
T ss_pred hhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc--------
Confidence 3333444444444555554443321 12223789999999999999999999999999998755332
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC-CC
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-KS 206 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-~~ 206 (537)
... |-+ ...+++.+...-+..+ ..+.++||+|||+|.+.... ..
T Consensus 187 --k~v--------GEs-----------Ek~IR~~F~~A~~~a~--------------~~~aPcVLFIDEIDA~~g~r~~~ 231 (413)
T PLN00020 187 --ENA--------GEP-----------GKLIRQRYREAADIIK--------------KKGKMSCLFINDLDAGAGRFGTT 231 (413)
T ss_pred --CcC--------CcH-----------HHHHHHHHHHHHHHhh--------------ccCCCeEEEEehhhhcCCCCCCC
Confidence 111 111 1235555554322110 24578999999999987431 11
Q ss_pred -CC----hH-HHHHhhhhh-------------cCCCcEEEEEEeCCCc--cccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 207 -SS----IL-PFLFGLSDI-------------LKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 207 -~~----lL-~~L~rl~e~-------------~~~~~l~vI~Is~~~~--~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.. ++ ..|+.+.+- .....+.||..+|.+. +.-+.|.|... .. |...+.++..+||.
T Consensus 232 ~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfD-k~--i~lPd~e~R~eIL~ 308 (413)
T PLN00020 232 QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRME-KF--YWAPTREDRIGVVH 308 (413)
T ss_pred CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCC-ce--eCCCCHHHHHHHHH
Confidence 11 22 455554331 1134577777777643 22234555332 12 34678999999985
Q ss_pred hcCCChhhhhHHHHHHhhccccc
Q 009352 266 RNQANQKLYSSFLDIVLRPFCRI 288 (537)
Q Consensus 266 ~~r~~~~l~~~~~~~il~~~~~~ 288 (537)
.......+...-+..+++.|.+.
T Consensus 309 ~~~r~~~l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 309 GIFRDDGVSREDVVKLVDTFPGQ 331 (413)
T ss_pred HHhccCCCCHHHHHHHHHcCCCC
Confidence 43222233333444455555443
No 37
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=2.8e-09 Score=120.11 Aligned_cols=196 Identities=16% Similarity=0.147 Sum_probs=115.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~--~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
.+.|-+..+..|.+++.. ...++ ++++||+|||||++++.+++.+..... -.-|..|.+-..+- +......
T Consensus 17 dIIGQe~Iv~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~----~g~~~Dv 90 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA----QGRFVDL 90 (944)
T ss_pred HhcCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh----cCCCceE
Confidence 467889999999998865 23455 579999999999999999999864311 11344443322111 0000000
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
-..++.+ -.. ++.++.+++.+... ...++..|+||||+|+|. ...+.+|++
T Consensus 91 -iEidAas----~~k----VDdIReLie~v~~~---------------P~~gk~KViIIDEAh~LT-----~eAqNALLK 141 (944)
T PRK14949 91 -IEVDAAS----RTK----VDDTRELLDNVQYR---------------PSRGRFKVYLIDEVHMLS-----RSSFNALLK 141 (944)
T ss_pred -EEecccc----ccC----HHHHHHHHHHHHhh---------------hhcCCcEEEEEechHhcC-----HHHHHHHHH
Confidence 0001100 011 22344444433211 012455688999999995 345678888
Q ss_pred hhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccC
Q 009352 216 LSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 216 l~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r 290 (537)
..|-.+ .++.+|++++... ..+++|. ..+.|.+++.+|+.+.|.... ....+.+..++.+.....|..|
T Consensus 142 tLEEPP-~~vrFILaTTe~~kLl~TIlSRC-----q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R 215 (944)
T PRK14949 142 TLEEPP-EHVKFLLATTDPQKLPVTVLSRC-----LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR 215 (944)
T ss_pred HHhccC-CCeEEEEECCCchhchHHHHHhh-----eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 877653 4688888876632 2333433 689999999999998885311 1223445566666666555666
Q ss_pred CHHHH
Q 009352 291 RVDEL 295 (537)
Q Consensus 291 ~l~~L 295 (537)
+...|
T Consensus 216 ~ALnL 220 (944)
T PRK14949 216 DALSL 220 (944)
T ss_pred HHHHH
Confidence 54443
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.00 E-value=5.1e-09 Score=111.81 Aligned_cols=153 Identities=17% Similarity=0.233 Sum_probs=91.8
Q ss_pred CCCCChhHHhhcCCChHHHHHH---HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009352 48 QEPISLDDLLSRFPGRRVQILE---LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 48 ~~~~~~~~l~~~~~~Re~qi~~---L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~ 124 (537)
.+|.+++ .++|++..+.. |..++.. ...++++|+||||||||++++.+.+.++..++.++|.... ..
T Consensus 6 ~RP~~l~----d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~-~~--- 75 (413)
T PRK13342 6 MRPKTLD----EVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG-VK--- 75 (413)
T ss_pred hCCCCHH----HhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-HH---
Confidence 3454544 47788887666 7777754 2345799999999999999999999999888888874321 00
Q ss_pred HHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
.++.+++...... ..++..||+|||+|++...
T Consensus 76 --------------------------------~ir~ii~~~~~~~---------------~~g~~~vL~IDEi~~l~~~- 107 (413)
T PRK13342 76 --------------------------------DLREVIEEARQRR---------------SAGRRTILFIDEIHRFNKA- 107 (413)
T ss_pred --------------------------------HHHHHHHHHHHhh---------------hcCCceEEEEechhhhCHH-
Confidence 0122222211100 0235678999999998541
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCCc-cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSP-DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~-~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.+ ..|+...|- ..+.+|..++..+ ..+.....++ ...+.|++++.+++.++|.+
T Consensus 108 -~q---~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR-~~~~~~~~ls~e~i~~lL~~ 162 (413)
T PRK13342 108 -QQ---DALLPHVED---GTITLIGATTENPSFEVNPALLSR-AQVFELKPLSEEDIEQLLKR 162 (413)
T ss_pred -HH---HHHHHHhhc---CcEEEEEeCCCChhhhccHHHhcc-ceeeEeCCCCHHHHHHHHHH
Confidence 12 233333332 2344444433322 1222211121 15789999999999999964
No 39
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.00 E-value=6.9e-09 Score=92.50 Aligned_cols=57 Identities=26% Similarity=0.418 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s 119 (537)
++|+.++..+...+.. ....+++|+|++|||||++++.+.+.+ +..+++++|.+...
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 4788999999888865 245679999999999999999999998 77889998866543
No 40
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.3e-09 Score=112.15 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=98.5
Q ss_pred hhcCCChHHHHHHHHHHHcccCC----------CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTLNS----------SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~----------~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
.+.+-|=+.++.+|..++..-.. |.+-+++|||||||||++++++..++++++.-|++.+..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv-------- 260 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV-------- 260 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh--------
Confidence 45688999999999888755211 223499999999999999999999999999999986633
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
..+.| -+. ..++.+|+... ...|+|++|||+|.+....
T Consensus 261 --SGvSG--------ESE-----------kkiRelF~~A~-------------------~~aPcivFiDeIDAI~pkRe~ 300 (802)
T KOG0733|consen 261 --SGVSG--------ESE-----------KKIRELFDQAK-------------------SNAPCIVFIDEIDAITPKREE 300 (802)
T ss_pred --cccCc--------ccH-----------HHHHHHHHHHh-------------------ccCCeEEEeecccccccchhh
Confidence 22222 111 23666666421 3468999999999996321
Q ss_pred CC----CChHHHHHhhhhhcCC-----CcEEEEEEeCCCcccc---ccCCCCCC-CceeecCCCC-HHHHHHHHH
Q 009352 205 KS----SSILPFLFGLSDILKM-----PEVGMIFISSTSPDTY---HSNTGYVA-PIHVYFPECT-EDDLRQIFM 265 (537)
Q Consensus 205 ~~----~~lL~~L~rl~e~~~~-----~~l~vI~Is~~~~~~f---~~r~~~~~-p~~I~FppYt-~~el~~IL~ 265 (537)
++ ..++..|+...+-+.. ..|-||..+|- ||.+ +.|.|.+. .+.++.|.=+ +++|.+|+.
T Consensus 301 aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR-PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 301 AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR-PDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC-CcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 11 2355556654433221 12444444443 4444 56777542 2344554332 244555544
No 41
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=3.4e-09 Score=117.33 Aligned_cols=168 Identities=15% Similarity=0.163 Sum_probs=104.6
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~--~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.++|-+..+..|...+... ..++ ++++||+|+|||++++.+++.+..... .-.|..|. +|.++...
T Consensus 16 ~divGQe~vv~~L~~~l~~~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~--------~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG--RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD--------NCREIEQG 85 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH--------HHHHHHcC
Confidence 34678899999999988762 3445 589999999999999999999864321 12477773 33333211
Q ss_pred c-ccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHH
Q 009352 135 K-KNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (537)
Q Consensus 135 ~-~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~ 211 (537)
. ++- .++.+ . .. ++.++++++.+... ...++.-|+||||+|+|.. .-..
T Consensus 86 ~~~D~ieidaas-~---~~----VddiR~li~~~~~~---------------p~~g~~KV~IIDEah~Ls~-----~a~N 137 (647)
T PRK07994 86 RFVDLIEIDAAS-R---TK----VEDTRELLDNVQYA---------------PARGRFKVYLIDEVHMLSR-----HSFN 137 (647)
T ss_pred CCCCceeecccc-c---CC----HHHHHHHHHHHHhh---------------hhcCCCEEEEEechHhCCH-----HHHH
Confidence 0 100 01100 0 01 23345455433211 1134556888999999953 3467
Q ss_pred HHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 212 FLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 212 ~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+|++..|-.+ .++.+|++++.+ ..+...+.++ ...++|.+++.+|+.+.|..
T Consensus 138 ALLKtLEEPp-~~v~FIL~Tt~~-~kLl~TI~SR-C~~~~f~~Ls~~ei~~~L~~ 189 (647)
T PRK07994 138 ALLKTLEEPP-EHVKFLLATTDP-QKLPVTILSR-CLQFHLKALDVEQIRQQLEH 189 (647)
T ss_pred HHHHHHHcCC-CCeEEEEecCCc-cccchHHHhh-heEeeCCCCCHHHHHHHHHH
Confidence 8888877653 578899987764 3333222221 26899999999999988853
No 42
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=3.4e-09 Score=117.08 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=112.5
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.+.|.+..++.|...+... ..+ .++++||+|+|||++++.+.+.+.... ....|..|.+-+.+-..-.-.+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 35788899999999998752 334 479999999999999999999886422 2234666654332211000000000
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
++.+ . ..++.++.+++.+... ...++.-|+||||+|.|.. ..+..|+
T Consensus 94 -----daAs----~----~gVd~IRelle~a~~~---------------P~~gk~KVIIIDEad~Ls~-----~A~NALL 140 (709)
T PRK08691 94 -----DAAS----N----TGIDNIREVLENAQYA---------------PTAGKYKVYIIDEVHMLSK-----SAFNAML 140 (709)
T ss_pred -----eccc----c----CCHHHHHHHHHHHHhh---------------hhhCCcEEEEEECccccCH-----HHHHHHH
Confidence 0000 0 1123355555432110 0123456888999998853 3456777
Q ss_pred hhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhcccccc
Q 009352 215 GLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRIT 289 (537)
Q Consensus 215 rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~ 289 (537)
+..|-.+ .++++||++++.. ..+.+|. ..+.|++++.+++.++|.... ....+-+..+..++....+.-
T Consensus 141 KtLEEPp-~~v~fILaTtd~~kL~~TIrSRC-----~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 141 KTLEEPP-EHVKFILATTDPHKVPVTVLSRC-----LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSM 214 (709)
T ss_pred HHHHhCC-CCcEEEEEeCCccccchHHHHHH-----hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCH
Confidence 7766543 5688999987742 2333333 578999999999988885321 112233444555555544444
Q ss_pred CC
Q 009352 290 KR 291 (537)
Q Consensus 290 r~ 291 (537)
|+
T Consensus 215 Rd 216 (709)
T PRK08691 215 RD 216 (709)
T ss_pred HH
Confidence 44
No 43
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.97 E-value=7.5e-09 Score=116.73 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=48.0
Q ss_pred cCCCCChhHHhhcCCChHHHHH---HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 47 GQEPISLDDLLSRFPGRRVQIL---ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 47 ~~~~~~~~~l~~~~~~Re~qi~---~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
..+|.+++ .|.|.+..+. .|..++.. ...++++||||||||||++++.+.+.++..++.+||.
T Consensus 21 k~RP~tld----d~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 21 RLRPRTLE----EFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred hcCCCcHH----HhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 44455554 4778888774 56666654 3456899999999999999999999988788888763
No 44
>CHL00176 ftsH cell division protein; Validated
Probab=98.95 E-value=8.6e-09 Score=114.81 Aligned_cols=159 Identities=14% Similarity=0.075 Sum_probs=96.0
Q ss_pred hcCCChHHHHHHHHHHHcc---cC-------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGT---LN-------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~---~~-------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.|.++...+|..++.. .. .....+++|||||||||+++++++.+++.++++++|.+...
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~-------- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE-------- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH--------
Confidence 4467777777666665422 11 11235999999999999999999999999999998855311
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--- 204 (537)
...+ .. . ..++.++... ....++||+|||+|.+....
T Consensus 255 --~~~g--------~~-------~----~~vr~lF~~A-------------------~~~~P~ILfIDEID~l~~~r~~~ 294 (638)
T CHL00176 255 --MFVG--------VG-------A----ARVRDLFKKA-------------------KENSPCIVFIDEIDAVGRQRGAG 294 (638)
T ss_pred --Hhhh--------hh-------H----HHHHHHHHHH-------------------hcCCCcEEEEecchhhhhcccCC
Confidence 1111 00 0 1233344321 12457899999999995321
Q ss_pred --C----CCChHHHHHhhhhh-cCCCcEEEEEEeCCCccccc---cCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 --K----SSSILPFLFGLSDI-LKMPEVGMIFISSTSPDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 --~----~~~lL~~L~rl~e~-~~~~~l~vI~Is~~~~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
. ....+..|+...+- ....++.||.++|.+ +.+. .|.+ +....|+|+.++.++..+||..
T Consensus 295 ~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~-~~LD~ALlRpG-RFd~~I~v~lPd~~~R~~IL~~ 364 (638)
T CHL00176 295 IGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRV-DILDAALLRPG-RFDRQITVSLPDREGRLDILKV 364 (638)
T ss_pred CCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCch-Hhhhhhhhccc-cCceEEEECCCCHHHHHHHHHH
Confidence 0 01234555443322 122356666666653 2222 2222 2235899999999999999954
No 45
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=5.8e-09 Score=114.41 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=111.6
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.+.|.+...+.|...+... ..+ .++++||+|+|||++++.+++.+.... .-.-|..|.+-+ .+...
T Consensus 15 ddVIGQe~vv~~L~~aI~~g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~--------~I~~g 84 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG--RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK--------AVNEG 84 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH--------HHhcC
Confidence 35788899999999988752 223 479999999999999999999986422 112365665322 22111
Q ss_pred -ccc--ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHH
Q 009352 135 -KKN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (537)
Q Consensus 135 -~~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~ 211 (537)
.++ ..++.+ . .. ++.++.+++.+-.. ...++.-|+||||+|+|.. .-..
T Consensus 85 ~hpDviEIDAAs-~---~~----VddIReli~~~~y~---------------P~~gk~KV~IIDEVh~LS~-----~A~N 136 (702)
T PRK14960 85 RFIDLIEIDAAS-R---TK----VEDTRELLDNVPYA---------------PTQGRFKVYLIDEVHMLST-----HSFN 136 (702)
T ss_pred CCCceEEecccc-c---CC----HHHHHHHHHHHhhh---------------hhcCCcEEEEEechHhcCH-----HHHH
Confidence 000 001100 0 11 23355555432110 0123456888999999853 3456
Q ss_pred HHHhhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHhhccc
Q 009352 212 FLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVLRPFC 286 (537)
Q Consensus 212 ~L~rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il~~~~ 286 (537)
+|++..|-.+ .++.+||++++.. ..+.+|. ..+.|.+++.+++.+.|..- .....+....+..+.....
T Consensus 137 ALLKtLEEPP-~~v~FILaTtd~~kIp~TIlSRC-----q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~ 210 (702)
T PRK14960 137 ALLKTLEEPP-EHVKFLFATTDPQKLPITVISRC-----LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQ 210 (702)
T ss_pred HHHHHHhcCC-CCcEEEEEECChHhhhHHHHHhh-----heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7777766543 5688999988742 3334443 68999999999999888531 1112233444444444444
Q ss_pred cccCC
Q 009352 287 RITKR 291 (537)
Q Consensus 287 ~~~r~ 291 (537)
+.-|+
T Consensus 211 GdLRd 215 (702)
T PRK14960 211 GSLRD 215 (702)
T ss_pred CCHHH
Confidence 44444
No 46
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=4e-09 Score=115.39 Aligned_cols=195 Identities=11% Similarity=0.098 Sum_probs=114.8
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC----e---EEEeccccCCHHHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP----F---VYTSCLSCYSPRILFESILN 129 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~----~---~~inc~~~~s~~~l~~~Il~ 129 (537)
++++|-+..++.|.+.+... ..++ ++++|++|+|||++++.+.+.+... . ..--|..|.+-+.+-.
T Consensus 16 ddVIGQe~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a---- 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA---- 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc----
Confidence 34677789999999988752 3344 6899999999999999999988631 0 0112555543222110
Q ss_pred HHhhccccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCC
Q 009352 130 QLLLHKKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS 207 (537)
Q Consensus 130 ~L~~~~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~ 207 (537)
+..++. .++.+ -.. ++.++++++.+... ...++.-|+||||+|.|..
T Consensus 90 ---G~hpDviEIdAas----~~g----VDdIReLie~~~~~---------------P~~gr~KViIIDEah~Ls~----- 138 (700)
T PRK12323 90 ---GRFVDYIEMDAAS----NRG----VDEMAQLLDKAVYA---------------PTAGRFKVYMIDEVHMLTN----- 138 (700)
T ss_pred ---CCCCcceEecccc----cCC----HHHHHHHHHHHHhc---------------hhcCCceEEEEEChHhcCH-----
Confidence 111100 00000 011 23355555443211 0133456888999999953
Q ss_pred ChHHHHHhhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHh
Q 009352 208 SILPFLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVL 282 (537)
Q Consensus 208 ~lL~~L~rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il 282 (537)
.-.+.|++..|-.+ .++.+||+++... ..+.+|. ..+.|.+++.+++.+.|..- .....+.+..++.++
T Consensus 139 ~AaNALLKTLEEPP-~~v~FILaTtep~kLlpTIrSRC-----q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA 212 (700)
T PRK12323 139 HAFNAMLKTLEEPP-EHVKFILATTDPQKIPVTVLSRC-----LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA 212 (700)
T ss_pred HHHHHHHHhhccCC-CCceEEEEeCChHhhhhHHHHHH-----HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34567888777643 5788999998742 3344443 68999999999999987531 111223344555555
Q ss_pred hccccccCCHHHH
Q 009352 283 RPFCRITKRVDEL 295 (537)
Q Consensus 283 ~~~~~~~r~l~~L 295 (537)
....+..|+...|
T Consensus 213 ~~A~Gs~RdALsL 225 (700)
T PRK12323 213 QAAQGSMRDALSL 225 (700)
T ss_pred HHcCCCHHHHHHH
Confidence 5555555554333
No 47
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.93 E-value=8.1e-09 Score=117.81 Aligned_cols=154 Identities=13% Similarity=0.098 Sum_probs=93.6
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l----------~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.++||++++.++...|... ..++++++||||||||++++.+.+.+ +..+..++|.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------------ 247 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------------ 247 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------------
Confidence 35899999999999988663 34579999999999999999999876 2233444431
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--- 204 (537)
.+.. |. ....+|-..++++++.+. ...+.||+|||+|.|..-.
T Consensus 248 --~l~a-------~~------~~~g~~e~~l~~i~~~~~-------------------~~~~~ILfiDEih~l~~~g~~~ 293 (731)
T TIGR02639 248 --SLLA-------GT------KYRGDFEERLKAVVSEIE-------------------KEPNAILFIDEIHTIVGAGATS 293 (731)
T ss_pred --HHhh-------hc------cccchHHHHHHHHHHHHh-------------------ccCCeEEEEecHHHHhccCCCC
Confidence 1110 00 011244455666665421 1246799999999996421
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCC-ccc-------cccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTS-PDT-------YHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~-~~~-------f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.++.-...+++ ..+.. -.+.+|..++.. +.+ +.+|. ..|.|++++.+|+.+||..
T Consensus 294 ~~~~~~~~~L~-~~l~~-g~i~~IgaTt~~e~~~~~~~d~al~rRf-----~~i~v~~p~~~~~~~il~~ 356 (731)
T TIGR02639 294 GGSMDASNLLK-PALSS-GKLRCIGSTTYEEYKNHFEKDRALSRRF-----QKIDVGEPSIEETVKILKG 356 (731)
T ss_pred CccHHHHHHHH-HHHhC-CCeEEEEecCHHHHHHHhhhhHHHHHhC-----ceEEeCCCCHHHHHHHHHH
Confidence 11111222222 12221 247777776641 111 12222 4799999999999999964
No 48
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.93 E-value=7.7e-09 Score=104.59 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh--cCC---CeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--LSR---PFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~--l~~---~~~~inc~~~~s~~~l~~~Il~~L~~~~~~ 137 (537)
||.++++|...|.....+...+.|+|++|+|||+++..+++. ... .++++++....+...+++.|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999774444556899999999999999999977 443 457788888888899999999999654211
Q ss_pred ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhh
Q 009352 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLS 217 (537)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~ 217 (537)
. ....+..+....+++ .+ .+++++||||+++....++ ++...+ .
T Consensus 81 ~-------~~~~~~~~~~~~l~~-------~L----------------~~~~~LlVlDdv~~~~~~~---~l~~~~---~ 124 (287)
T PF00931_consen 81 I-------SDPKDIEELQDQLRE-------LL----------------KDKRCLLVLDDVWDEEDLE---ELREPL---P 124 (287)
T ss_dssp S-------SCCSSHHHHHHHHHH-------HH----------------CCTSEEEEEEEE-SHHHH-------------H
T ss_pred c-------ccccccccccccchh-------hh----------------ccccceeeeeeeccccccc---cccccc---c
Confidence 0 011233332222222 22 2347899999998775433 121111 1
Q ss_pred hhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 218 DILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 218 e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
.. ..+..||+.|... ......+. ....+..++.+.+|..+++.+.
T Consensus 125 ~~--~~~~kilvTTR~~--~v~~~~~~-~~~~~~l~~L~~~ea~~L~~~~ 169 (287)
T PF00931_consen 125 SF--SSGSKILVTTRDR--SVAGSLGG-TDKVIELEPLSEEEALELFKKR 169 (287)
T ss_dssp CH--HSS-EEEEEESCG--GGGTTHHS-CEEEEECSS--HHHHHHHHHHH
T ss_pred cc--ccccccccccccc--cccccccc-cccccccccccccccccccccc
Confidence 11 1357777777653 22211111 1357889999999999999643
No 49
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=5.7e-09 Score=115.56 Aligned_cols=212 Identities=11% Similarity=0.068 Sum_probs=112.4
Q ss_pred hcCCChHHHHHHHHHHHcccCCC---CCCeEEECCCCCCHHHHHHHHHHhcCCCeE----EEeccccCCHHHHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSS---MPPLFVYGSASTGKTSIIIQVFRHLSRPFV----YTSCLSCYSPRILFESILNQ 130 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~---~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~----~inc~~~~s~~~l~~~Il~~ 130 (537)
+++.+-++.+.+|..++....-+ ...++|+||+|||||++++.+...++..+. .++|....+...+...+..+
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~ 163 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESC 163 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhc
Confidence 35777889999999998764322 233899999999999999999998874322 23343322222222222222
Q ss_pred HhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChH
Q 009352 131 LLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSIL 210 (537)
Q Consensus 131 L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL 210 (537)
+.. + .....+|-. .+...-..+.- .| + ...++..||+|||++.+...+ +..+
T Consensus 164 ~~~--------~-----~s~~~~F~~----fl~~a~~~~~~------~g--~-~~~~~~~IILIDEiPn~~~r~--~~~l 215 (637)
T TIGR00602 164 FSN--------F-----QSQIEVFSE----FLLRATNKLQM------LG--D-DLMTDKKIILVEDLPNQFYRD--TRAL 215 (637)
T ss_pred ccc--------c-----cchHHHHHH----HHHHHHhhhcc------cc--c-ccCCceeEEEeecchhhchhh--HHHH
Confidence 210 0 011122221 22111000000 00 0 012356789999999887533 4567
Q ss_pred HHHHh-hhhhcCCCcEEEEEEeCCCcc------c--cc------cCCC-CCCCceeecCCCCHHHH----HHHHHhcCCC
Q 009352 211 PFLFG-LSDILKMPEVGMIFISSTSPD------T--YH------SNTG-YVAPIHVYFPECTEDDL----RQIFMRNQAN 270 (537)
Q Consensus 211 ~~L~r-l~e~~~~~~l~vI~Is~~~~~------~--f~------~r~~-~~~p~~I~FppYt~~el----~~IL~~~r~~ 270 (537)
..+++ ++.- ...+.+|+|+++.+. . |. ..+. ......|.|+||+..++ ..|+... ..
T Consensus 216 q~lLr~~~~e--~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E-~~ 292 (637)
T TIGR00602 216 HEILRWKYVS--IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIE-AK 292 (637)
T ss_pred HHHHHHHhhc--CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhh-hh
Confidence 77776 3322 246889999886542 1 11 0000 01124689999999994 5555321 11
Q ss_pred hhh----h--hHHHHHHhhccccccCC-HHHHHHHHH
Q 009352 271 QKL----Y--SSFLDIVLRPFCRITKR-VDELSTAFS 300 (537)
Q Consensus 271 ~~l----~--~~~~~~il~~~~~~~r~-l~~L~~~~~ 300 (537)
... + ...+..++..-.++.|. +..|+.+|.
T Consensus 293 ~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 293 KNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSS 329 (637)
T ss_pred ccccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 111 1 23444555544456664 677777654
No 50
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.92 E-value=1.6e-08 Score=110.53 Aligned_cols=135 Identities=17% Similarity=0.102 Sum_probs=81.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (537)
..+++|||||||||+++++++.+++.++++++|.+.. ....+. + . ..++.+
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~----------~~~~g~--------~-------~----~~l~~~ 139 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV----------EMFVGV--------G-------A----SRVRDL 139 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH----------HHHhcc--------c-------H----HHHHHH
Confidence 4599999999999999999999999999988875421 111111 0 0 123444
Q ss_pred HHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC---------CCChHHHHHhhhhh-cCCCcEEEEEEe
Q 009352 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK---------SSSILPFLFGLSDI-LKMPEVGMIFIS 231 (537)
Q Consensus 162 l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~---------~~~lL~~L~rl~e~-~~~~~l~vI~Is 231 (537)
+.... ...+.||+|||+|.+..... ....+..|+...+- ....++.||..+
T Consensus 140 f~~a~-------------------~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aT 200 (495)
T TIGR01241 140 FEQAK-------------------KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAAT 200 (495)
T ss_pred HHHHH-------------------hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEec
Confidence 43321 23467999999999863210 01233344333222 122345555555
Q ss_pred CCCccccc---cCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 232 STSPDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 232 ~~~~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
|. ++.+. .|.+ +....|+|+.++.++-.+|+..
T Consensus 201 n~-~~~ld~al~r~g-Rfd~~i~i~~Pd~~~R~~il~~ 236 (495)
T TIGR01241 201 NR-PDVLDPALLRPG-RFDRQVVVDLPDIKGREEILKV 236 (495)
T ss_pred CC-hhhcCHHHhcCC-cceEEEEcCCCCHHHHHHHHHH
Confidence 55 33332 2333 2235899999999999999854
No 51
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=1.4e-08 Score=110.12 Aligned_cols=207 Identities=14% Similarity=0.123 Sum_probs=116.8
Q ss_pred CCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCe------EEEeccccCCHHH
Q 009352 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPF------VYTSCLSCYSPRI 122 (537)
Q Consensus 49 ~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~------~~inc~~~~s~~~ 122 (537)
+|.++++ ++|-+..+..|...+... .-...++++||+|||||++++.+++.+.... .+.-|..|.+-+.
T Consensus 16 RP~~f~d----liGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~ 90 (507)
T PRK06645 16 RPSNFAE----LQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCIS 90 (507)
T ss_pred CCCCHHH----hcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHH
Confidence 4445544 567788888888876552 1123589999999999999999999986421 2234656644222
Q ss_pred HHHHHHHHHhhccccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcc
Q 009352 123 LFESILNQLLLHKKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (537)
Q Consensus 123 l~~~Il~~L~~~~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L 200 (537)
+.+ +..+.- .++.+ . .-++.++.+++..... ...++..|+||||+|.|
T Consensus 91 i~~-------~~h~Dv~eidaas-~-------~~vd~Ir~iie~a~~~---------------P~~~~~KVvIIDEa~~L 140 (507)
T PRK06645 91 FNN-------HNHPDIIEIDAAS-K-------TSVDDIRRIIESAEYK---------------PLQGKHKIFIIDEVHML 140 (507)
T ss_pred Hhc-------CCCCcEEEeeccC-C-------CCHHHHHHHHHHHHhc---------------cccCCcEEEEEEChhhc
Confidence 211 000100 00000 0 0133355555432110 11234568889999998
Q ss_pred cccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHH
Q 009352 201 REWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFL 278 (537)
Q Consensus 201 ~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~ 278 (537)
.. .-+..|++..|-.+ +++.+||+++.. +++...+.+ ....+.|.+++.+|+.++|.... ....+.+..+
T Consensus 141 s~-----~a~naLLk~LEepp-~~~vfI~aTte~-~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL 212 (507)
T PRK06645 141 SK-----GAFNALLKTLEEPP-PHIIFIFATTEV-QKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEAL 212 (507)
T ss_pred CH-----HHHHHHHHHHhhcC-CCEEEEEEeCCh-HHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 53 33566666656532 567888877653 333322212 12579999999999999985321 1223445566
Q ss_pred HHHhhccccccCC-HHHHHHH
Q 009352 279 DIVLRPFCRITKR-VDELSTA 298 (537)
Q Consensus 279 ~~il~~~~~~~r~-l~~L~~~ 298 (537)
..+.....+.-|+ +.+|..+
T Consensus 213 ~~Ia~~s~GslR~al~~Ldka 233 (507)
T PRK06645 213 RIIAYKSEGSARDAVSILDQA 233 (507)
T ss_pred HHHHHHcCCCHHHHHHHHHHH
Confidence 6666655555555 3444443
No 52
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.92 E-value=2.4e-08 Score=114.16 Aligned_cols=159 Identities=17% Similarity=0.169 Sum_probs=96.3
Q ss_pred cCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
.+.|-+....+|...+.-. ..+...+++|||||||||++++++..+++.+++.+++.+..
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~--------- 524 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL--------- 524 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh---------
Confidence 4567677666666654321 11223489999999999999999999999999988875422
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC--
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-- 205 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~-- 205 (537)
....+ .+ -..++.++... + ...+.||+|||+|.|....+
T Consensus 525 -~~~vG--------es-----------e~~i~~~f~~A----~---------------~~~p~iifiDEid~l~~~r~~~ 565 (733)
T TIGR01243 525 -SKWVG--------ES-----------EKAIREIFRKA----R---------------QAAPAIIFFDEIDAIAPARGAR 565 (733)
T ss_pred -hcccC--------cH-----------HHHHHHHHHHH----H---------------hcCCEEEEEEChhhhhccCCCC
Confidence 11111 11 01244444432 1 23568999999999963211
Q ss_pred -C----CChHHHHHhhhh-hcCCCcEEEEEEeCCCc--cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 206 -S----SSILPFLFGLSD-ILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 206 -~----~~lL~~L~rl~e-~~~~~~l~vI~Is~~~~--~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
. ..++..|+...+ .....++.||..+|.++ +.-+.|.|. ....|+||.++.++..+|+..
T Consensus 566 ~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgR-fd~~i~v~~Pd~~~R~~i~~~ 633 (733)
T TIGR01243 566 FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGR-FDRLILVPPPDEEARKEIFKI 633 (733)
T ss_pred CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCc-cceEEEeCCcCHHHHHHHHHH
Confidence 0 124444444332 21234577777777643 222223332 235899999999999999953
No 53
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=9.3e-09 Score=112.07 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=111.2
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhh-c
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLL-H 134 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~-~ 134 (537)
.++|-+..+..|...+... ..++ +++|||+|||||++++.+++.+... ...-.|..|.+-+ .+.. .
T Consensus 17 divGq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~--------~i~~g~ 86 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR--------EIDEGR 86 (509)
T ss_pred HhcCCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH--------HHhcCC
Confidence 4677789999999998652 3444 6899999999999999999998632 1122466665322 2211 1
Q ss_pred cccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 135 KKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 135 ~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
.++- .++.+ - .-++.++.+++.+... ...++.-|+||||+|.|.. +-..+
T Consensus 87 ~~d~~eidaas----~----~~v~~iR~l~~~~~~~---------------p~~~~~kV~iIDE~~~ls~-----~a~na 138 (509)
T PRK14958 87 FPDLFEVDAAS----R----TKVEDTRELLDNIPYA---------------PTKGRFKVYLIDEVHMLSG-----HSFNA 138 (509)
T ss_pred CceEEEEcccc----c----CCHHHHHHHHHHHhhc---------------cccCCcEEEEEEChHhcCH-----HHHHH
Confidence 1100 01000 0 1123344454432110 1123456788999999963 34567
Q ss_pred HHhhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHhhcccc
Q 009352 213 LFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVLRPFCR 287 (537)
Q Consensus 213 L~rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il~~~~~ 287 (537)
|++..|-.+ +++.+||+++++. ..+.+|. ..+.|.+++.+++.+.|..- .....+.+..++.++....+
T Consensus 139 LLk~LEepp-~~~~fIlattd~~kl~~tI~SRc-----~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 139 LLKTLEEPP-SHVKFILATTDHHKLPVTVLSRC-----LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHHHhccC-CCeEEEEEECChHhchHHHHHHh-----hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888777653 5788999987642 2334443 57899999999988765321 11223344455555555444
Q ss_pred ccCC
Q 009352 288 ITKR 291 (537)
Q Consensus 288 ~~r~ 291 (537)
..|+
T Consensus 213 slR~ 216 (509)
T PRK14958 213 SVRD 216 (509)
T ss_pred cHHH
Confidence 4444
No 54
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.89 E-value=3.9e-09 Score=102.10 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=93.0
Q ss_pred HHHHHHHcccCC----CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCC
Q 009352 68 LELLRLLGTLNS----SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYS 143 (537)
Q Consensus 68 ~~L~~ll~~~~~----~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~ 143 (537)
+-|..+|..... ...++++|||||||||.+++++.++.++++..|++.+. +..-.|
T Consensus 134 rli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~l----------iGehVG---------- 193 (368)
T COG1223 134 RLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATEL----------IGEHVG---------- 193 (368)
T ss_pred HHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHH----------HHHHhh----------
Confidence 345666655321 23579999999999999999999999999999986432 111111
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccc-ccC------CCCChHHHHHhh
Q 009352 144 SAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR-EWD------KSSSILPFLFGL 216 (537)
Q Consensus 144 ~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~-~~d------~~~~lL~~L~rl 216 (537)
+-..+++++.+..- +.-++|++|||+|.+. ++. .-++++++|+.=
T Consensus 194 ---------dgar~Ihely~rA~-------------------~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe 245 (368)
T COG1223 194 ---------DGARRIHELYERAR-------------------KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE 245 (368)
T ss_pred ---------hHHHHHHHHHHHHH-------------------hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHh
Confidence 11123444544321 2358999999999985 110 113455555542
Q ss_pred hhhcC-CCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 217 SDILK-MPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 217 ~e~~~-~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.+-.. ...+|.|..+|. |+-+++.+.++....|.|.-.+.+|..+||..
T Consensus 246 lDgi~eneGVvtIaaTN~-p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~ 295 (368)
T COG1223 246 LDGIKENEGVVTIAATNR-PELLDPAIRSRFEEEIEFKLPNDEERLEILEY 295 (368)
T ss_pred ccCcccCCceEEEeecCC-hhhcCHHHHhhhhheeeeeCCChHHHHHHHHH
Confidence 22221 123555555554 45555544455456899999999999999953
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.88 E-value=4.4e-08 Score=112.46 Aligned_cols=164 Identities=17% Similarity=0.203 Sum_probs=98.6
Q ss_pred hhcCCChHHHHHHHHHHHccc----CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 57 LSRFPGRRVQILELLRLLGTL----NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~----~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
.+.++|-++..+.+..++... ...++.++++||||||||++++.+.+.++.+++.++|....... .+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~--------~i~ 390 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEA--------EIR 390 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHH--------HHc
Confidence 345788888888888765421 11345699999999999999999999999999999986543322 222
Q ss_pred hccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 133 LHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 133 ~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
++... ..|. .... +.+.+... ....+ ||+|||+|++... ...+...+
T Consensus 391 g~~~~-~~g~-------~~g~----i~~~l~~~-------------------~~~~~-villDEidk~~~~-~~~~~~~a 437 (775)
T TIGR00763 391 GHRRT-YVGA-------MPGR----IIQGLKKA-------------------KTKNP-LFLLDEIDKIGSS-FRGDPASA 437 (775)
T ss_pred CCCCc-eeCC-------CCch----HHHHHHHh-------------------CcCCC-EEEEechhhcCCc-cCCCHHHH
Confidence 32111 1111 0111 22222210 01223 7889999999642 12344444
Q ss_pred HHhhhh------hc--------CCCcEEEEEEeCCC---ccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 213 LFGLSD------IL--------KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 213 L~rl~e------~~--------~~~~l~vI~Is~~~---~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
|+.+.+ +. +..++.+|+.+|.. +..++.|. ..|.|++|+.+|..+|+.+
T Consensus 438 Ll~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~-----~vi~~~~~~~~e~~~I~~~ 503 (775)
T TIGR00763 438 LLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRM-----EVIELSGYTEEEKLEIAKK 503 (775)
T ss_pred HHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCe-----eEEecCCCCHHHHHHHHHH
Confidence 544322 11 11345566556553 24445544 4789999999999999954
No 56
>PTZ00202 tuzin; Provisional
Probab=98.87 E-value=2.9e-07 Score=96.27 Aligned_cols=208 Identities=18% Similarity=0.223 Sum_probs=124.2
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
+..|.||+.|+.+|...+.......+ .+.|.|++|+|||++++.++..++....++|.. ++..++..|+.+|+..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr---g~eElLr~LL~ALGV~- 336 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR---GTEDTLRSVVKALGVP- 336 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC---CHHHHHHHHHHHcCCC-
Confidence 45799999999999999975333333 468999999999999999999988666666754 7899999999999531
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
+. ..| .++...+++.+..... .+++.+|||| +|++ + ++ |.|
T Consensus 337 p~--------~~k---~dLLrqIqeaLl~~~~-----------------e~GrtPVLII----~lre--g-~~----l~r 377 (550)
T PTZ00202 337 NV--------EAC---GDLLDFISEACRRAKK-----------------MNGETPLLVL----KLRE--G-SS----LQR 377 (550)
T ss_pred Cc--------ccH---HHHHHHHHHHHHHHHH-----------------hCCCCEEEEE----EecC--C-Cc----HHH
Confidence 10 111 2344444444432211 1245555555 4554 2 22 223
Q ss_pred hhh----hcCCCcEEEEEEeCCC-----ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhhccc
Q 009352 216 LSD----ILKMPEVGMIFISSTS-----PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC 286 (537)
Q Consensus 216 l~e----~~~~~~l~vI~Is~~~-----~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~~~~ 286 (537)
.+. +.-...+|.|.+--.. ....++|. -....|+++.+|..+..+ +..+.. -+..+++...
T Consensus 378 vyne~v~la~drr~ch~v~evpleslt~~~~~lprl-----df~~vp~fsr~qaf~y~~-h~~dal----~l~~fve~vg 447 (550)
T PTZ00202 378 VYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRL-----DFYLVPNFSRSQAFAYTQ-HAIDAL----SLEHFVDVVG 447 (550)
T ss_pred HHHHHHHHHccchhheeeeeehHhhcchhcccCccc-----eeEecCCCCHHHHHHHHh-hccchH----HhhHHHHhhc
Confidence 221 1101357766652211 11222332 133459999999999984 443322 2233445566
Q ss_pred cccCCHHHHHHHHHHhhhhhhhhhhcCCCCCChhhHHHHHhh
Q 009352 287 RITKRVDELSTAFSLLFKRYCEPLSDLGVLPNGEMKRRLFSH 328 (537)
Q Consensus 287 ~~~r~l~~L~~~~~~lw~~y~~P~~~~~~~~~e~~~~~L~~~ 328 (537)
..++|+.||..+.. .+.+.+.+-.+.+|.+.
T Consensus 448 tns~d~del~aav~-----------qr~vs~~~yt~~kl~ka 478 (550)
T PTZ00202 448 TNSNDLDELLAAVR-----------QRRVSAAEYTNQKLLKA 478 (550)
T ss_pred CCcccHHHHHHHHH-----------hcCCCHHHHhhHHHHHH
Confidence 67779999987654 34455555445556544
No 57
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=3.4e-08 Score=108.86 Aligned_cols=193 Identities=16% Similarity=0.132 Sum_probs=111.3
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+++.|-+..++.|..++.. ...++ +++|||+|||||++++.+++.+.... ..--|.+|.+= ..+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C--------~~i~~~ 82 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC--------VALAPN 82 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH--------HHhhcc
Confidence 3467889999999999876 23455 68999999999999999999876321 11246666542 222110
Q ss_pred ---ccc--ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCCh
Q 009352 135 ---KKN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSI 209 (537)
Q Consensus 135 ---~~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~l 209 (537)
..+ ..++.+. .. ++.++++.+.+... ...++.-|+||||+|.|.. .-
T Consensus 83 ~~~~~dvieidaas~----~g----vd~iRel~~~~~~~---------------P~~~~~KVvIIDEah~Lt~-----~A 134 (584)
T PRK14952 83 GPGSIDVVELDAASH----GG----VDDTRELRDRAFYA---------------PAQSRYRIFIVDEAHMVTT-----AG 134 (584)
T ss_pred cCCCceEEEeccccc----cC----HHHHHHHHHHHHhh---------------hhcCCceEEEEECCCcCCH-----HH
Confidence 000 0011010 01 23344444332110 0123445788999999964 34
Q ss_pred HHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhcccc
Q 009352 210 LPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCR 287 (537)
Q Consensus 210 L~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~ 287 (537)
..+|++..|..+ .++++||+++.+ .++...+.++ ..++.|.+++.+++.+.|.... ....+.+..+..++....+
T Consensus 135 ~NALLK~LEEpp-~~~~fIL~tte~-~kll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 135 FNALLKIVEEPP-EHLIFIFATTEP-EKVLPTIRSR-THHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHHHhcCC-CCeEEEEEeCCh-HhhHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 567777777643 578899988664 3443222221 2689999999999988885311 1112333444444444434
Q ss_pred ccCC
Q 009352 288 ITKR 291 (537)
Q Consensus 288 ~~r~ 291 (537)
..|+
T Consensus 212 dlR~ 215 (584)
T PRK14952 212 SPRD 215 (584)
T ss_pred CHHH
Confidence 4443
No 58
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.1e-08 Score=108.27 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=109.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHH
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVR 159 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~ 159 (537)
+..-|++|||||||||++++++.++.+..+++|.+.+.+|. ..| .+. ..++
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk----------~vG--------eSE-----------r~ir 517 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK----------YVG--------ESE-----------RAIR 517 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH----------hcC--------chH-----------HHHH
Confidence 33459999999999999999999999999999998764432 222 111 2344
Q ss_pred HHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC-C-----CCChHHHHHhhhhhcC-CCcEEEEEEeC
Q 009352 160 EALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-K-----SSSILPFLFGLSDILK-MPEVGMIFISS 232 (537)
Q Consensus 160 ~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-~-----~~~lL~~L~rl~e~~~-~~~l~vI~Is~ 232 (537)
++|++. + ...+.||+|||+|.+.... + ...+|..|+.-.+=.. ..+|-||..+|
T Consensus 518 ~iF~kA----R---------------~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATN 578 (693)
T KOG0730|consen 518 EVFRKA----R---------------QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATN 578 (693)
T ss_pred HHHHHH----h---------------hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccC
Confidence 555432 2 2356899999999997432 1 1235666655333221 23455555555
Q ss_pred CCccccc---cCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhhH-HHHHHhhccccccC-CHHHHHHHHHHhhhh
Q 009352 233 TSPDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSS-FLDIVLRPFCRITK-RVDELSTAFSLLFKR 305 (537)
Q Consensus 233 ~~~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~-~~~~il~~~~~~~r-~l~~L~~~~~~lw~~ 305 (537)
- |+.++ -|.|. ....||+|+.+.+--.+||...--.-.+.+. .++.+...-.++.+ |+..++.-+..+|-+
T Consensus 579 R-pd~ID~ALlRPGR-lD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 579 R-PDMIDPALLRPGR-LDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALR 654 (693)
T ss_pred C-hhhcCHHHcCCcc-cceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 4 55554 34442 3358999999999999999644322223332 23444443334443 677777777777654
No 59
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.4e-08 Score=108.74 Aligned_cols=212 Identities=17% Similarity=0.172 Sum_probs=122.5
Q ss_pred hcCCChHHHHHHHHHHHcc----cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 58 SRFPGRRVQILELLRLLGT----LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~----~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
...+|=++.-+.+..+|.= ..-.+|.+.+.||||+||||+.+.+++.++++|+.++.-..... ..+.|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE--------AEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE--------AEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH--------HHhcc
Confidence 3456666666666665522 11245668899999999999999999999999999986655442 23455
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
|... +-| .+=.+++++++.+ .....|++|||+|++... ...+--.+|
T Consensus 395 HRRT-YIG------------------amPGrIiQ~mkka-------------~~~NPv~LLDEIDKm~ss-~rGDPaSAL 441 (782)
T COG0466 395 HRRT-YIG------------------AMPGKIIQGMKKA-------------GVKNPVFLLDEIDKMGSS-FRGDPASAL 441 (782)
T ss_pred cccc-ccc------------------cCChHHHHHHHHh-------------CCcCCeEEeechhhccCC-CCCChHHHH
Confidence 5322 011 0112233334321 122347789999999742 112222333
Q ss_pred Hhh--hhhc------------CCCcEEEEEEeCC---CccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCC-----h
Q 009352 214 FGL--SDIL------------KMPEVGMIFISST---SPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQAN-----Q 271 (537)
Q Consensus 214 ~rl--~e~~------------~~~~l~vI~Is~~---~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~-----~ 271 (537)
+.. +|.- ++.+|-+|..+|. .|.+++.|. ..|.++.||.+|=.+|-.++-.. .
T Consensus 442 LEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM-----EiI~lsgYt~~EKl~IAk~~LiPk~~~~~ 516 (782)
T COG0466 442 LEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM-----EVIRLSGYTEDEKLEIAKRHLIPKQLKEH 516 (782)
T ss_pred HhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcce-----eeeeecCCChHHHHHHHHHhcchHHHHHc
Confidence 322 1110 1222333434443 467777777 68999999999999998654321 1
Q ss_pred hhhhH---HHHHHh-hccccccCC--HHHHHHHHHHhhhhhhhhhhcCCC
Q 009352 272 KLYSS---FLDIVL-RPFCRITKR--VDELSTAFSLLFKRYCEPLSDLGV 315 (537)
Q Consensus 272 ~l~~~---~~~~il-~~~~~~~r~--l~~L~~~~~~lw~~y~~P~~~~~~ 315 (537)
++-.+ +-+.++ ..+..|||. +..|.....++.+++..-+..+..
T Consensus 517 gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~ 566 (782)
T COG0466 517 GLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKE 566 (782)
T ss_pred CCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 22222 112222 333346663 677777777777777666665443
No 60
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=8.2e-09 Score=113.49 Aligned_cols=198 Identities=14% Similarity=0.178 Sum_probs=112.2
Q ss_pred CCCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHH
Q 009352 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFE 125 (537)
Q Consensus 48 ~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~ 125 (537)
-+|.++++ +.|-+..+..|.+++... .-.+.++++||+|||||++++.+.+.+.... .--.|.+|.+-+.++.
T Consensus 10 yRP~sf~d----IiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 10 YRPQTFAE----VAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQ 84 (624)
T ss_pred hCCCCHHH----hcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhc
Confidence 34555554 457788888888888652 1124588999999999999999999886321 1124666654433322
Q ss_pred HHHHHHhhccccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc
Q 009352 126 SILNQLLLHKKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (537)
Q Consensus 126 ~Il~~L~~~~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~ 203 (537)
. ..++- .++.+ ... ++.++.+.+.+ .+. ...++..||||||+|.|..
T Consensus 85 g-------~hpDv~eId~a~----~~~----Id~iR~L~~~~-~~~--------------p~~g~~kVIIIDEad~Lt~- 133 (624)
T PRK14959 85 G-------MHVDVVEIDGAS----NRG----IDDAKRLKEAI-GYA--------------PMEGRYKVFIIDEAHMLTR- 133 (624)
T ss_pred C-------CCCceEEEeccc----ccC----HHHHHHHHHHH-Hhh--------------hhcCCceEEEEEChHhCCH-
Confidence 1 11110 01100 001 22333332221 110 0123456888999999953
Q ss_pred CCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHH
Q 009352 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFL 278 (537)
Q Consensus 204 d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~ 278 (537)
+....|++..|-. .+++.+||+++... ..+.+|. ..|.|++|+.+|+.++|... .....+.+..+
T Consensus 134 ----~a~naLLk~LEEP-~~~~ifILaTt~~~kll~TI~SRc-----q~i~F~pLs~~eL~~~L~~il~~egi~id~eal 203 (624)
T PRK14959 134 ----EAFNALLKTLEEP-PARVTFVLATTEPHKFPVTIVSRC-----QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAV 203 (624)
T ss_pred ----HHHHHHHHHhhcc-CCCEEEEEecCChhhhhHHHHhhh-----hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3456777766653 25788888887632 2333443 48899999999999998531 11112344445
Q ss_pred HHHhhccccccCC
Q 009352 279 DIVLRPFCRITKR 291 (537)
Q Consensus 279 ~~il~~~~~~~r~ 291 (537)
..+.....+..|+
T Consensus 204 ~lIA~~s~GdlR~ 216 (624)
T PRK14959 204 RLIARRAAGSVRD 216 (624)
T ss_pred HHHHHHcCCCHHH
Confidence 5555444434443
No 61
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2.5e-08 Score=110.31 Aligned_cols=189 Identities=12% Similarity=0.150 Sum_probs=110.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe-------EEEeccccCCHHHHHHHHHHH
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF-------VYTSCLSCYSPRILFESILNQ 130 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~-------~~inc~~~~s~~~l~~~Il~~ 130 (537)
+++|-+..+..|.+++... ..++ +++|||+|+|||++++.+.+.+...- ..--|..|.+= ..
T Consensus 17 dviGQe~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C--------~~ 86 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC--------RD 86 (618)
T ss_pred HhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH--------HH
Confidence 4667788888999988762 3444 68999999999999999999876310 01136666432 22
Q ss_pred Hhh-cccc--ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCC
Q 009352 131 LLL-HKKN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS 207 (537)
Q Consensus 131 L~~-~~~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~ 207 (537)
+.. ..++ ..++.+. .. ++.++++++.+... ...++.-|+||||+|.|..
T Consensus 87 i~~g~h~D~~eldaas~----~~----Vd~iReli~~~~~~---------------p~~g~~KV~IIDEvh~Ls~----- 138 (618)
T PRK14951 87 IDSGRFVDYTELDAASN----RG----VDEVQQLLEQAVYK---------------PVQGRFKVFMIDEVHMLTN----- 138 (618)
T ss_pred HHcCCCCceeecCcccc----cC----HHHHHHHHHHHHhC---------------cccCCceEEEEEChhhCCH-----
Confidence 211 1111 0011000 01 22344455432110 1123456888999999853
Q ss_pred ChHHHHHhhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHh
Q 009352 208 SILPFLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVL 282 (537)
Q Consensus 208 ~lL~~L~rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il 282 (537)
+-+..|++..|-.+ .++.+||+++++. ..+.+|. ..+.|.+++.+++.+.|.... ....+.+..+..++
T Consensus 139 ~a~NaLLKtLEEPP-~~~~fIL~Ttd~~kil~TIlSRc-----~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 139 TAFNAMLKTLEEPP-EYLKFVLATTDPQKVPVTVLSRC-----LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred HHHHHHHHhcccCC-CCeEEEEEECCchhhhHHHHHhc-----eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33567777766643 4688999887742 2334443 689999999999998885321 11223344455555
Q ss_pred hccccccCC
Q 009352 283 RPFCRITKR 291 (537)
Q Consensus 283 ~~~~~~~r~ 291 (537)
....+.-|+
T Consensus 213 ~~s~GslR~ 221 (618)
T PRK14951 213 RAARGSMRD 221 (618)
T ss_pred HHcCCCHHH
Confidence 544444444
No 62
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.87 E-value=2.6e-08 Score=106.17 Aligned_cols=165 Identities=19% Similarity=0.275 Sum_probs=96.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (537)
..+++|||++|+|||++++++.+++ +..++|++|.+ +...+..++... ...+|.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~------~~~~~~~~~~~~---------------~~~~~~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK------FTNDFVNALRNN---------------KMEEFK 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH------HHHHHHHHHHcC---------------CHHHHH
Confidence 3569999999999999999999876 45788888643 333344443210 112221
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCC-ChHHHHHhhhhhcCCCcEEEEEEeCCC
Q 009352 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS-SILPFLFGLSDILKMPEVGMIFISSTS 234 (537)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~-~lL~~L~rl~e~~~~~~l~vI~Is~~~ 234 (537)
. .+. ..-+|||||+|.+...+..+ .++..|-++.+. +..+|+.++..
T Consensus 195 ~----~~~------------------------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~----~~~iiits~~~ 242 (405)
T TIGR00362 195 E----KYR------------------------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN----GKQIVLTSDRP 242 (405)
T ss_pred H----HHH------------------------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC----CCCEEEecCCC
Confidence 1 111 12388899999986421111 233333344432 34567777765
Q ss_pred ccc---cccCCCCC--CCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhcccc-ccCCHHHHHHHHHHh
Q 009352 235 PDT---YHSNTGYV--APIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCR-ITKRVDELSTAFSLL 302 (537)
Q Consensus 235 ~~~---f~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~-~~r~l~~L~~~~~~l 302 (537)
|.. +..+..++ ....+.|++|+.++..+||..... ...+. +.+++.+.. ..+++.+|..+...+
T Consensus 243 p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~~~l~~l 314 (405)
T TIGR00362 243 PKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELP----DEVLEFIAKNIRSNVRELEGALNRL 314 (405)
T ss_pred HHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 532 23333322 225799999999999999964321 11222 334444443 455788888887777
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=2.4e-08 Score=108.70 Aligned_cols=199 Identities=17% Similarity=0.149 Sum_probs=111.1
Q ss_pred CCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC-eEEEeccccCCHHHHHHH
Q 009352 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP-FVYTSCLSCYSPRILFES 126 (537)
Q Consensus 49 ~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~-~~~inc~~~~s~~~l~~~ 126 (537)
+|.++++ +.|-+.....|..++... ..++ +++||||||||||+++.+++.+... ....-|..|.+-+.+-.
T Consensus 9 RP~~~~d----vvGq~~v~~~L~~~i~~~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~- 81 (504)
T PRK14963 9 RPITFDE----VVGQEHVKEVLLAALRQG--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR- 81 (504)
T ss_pred CCCCHHH----hcChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc-
Confidence 3445544 677788888888888762 3455 5999999999999999999988521 11234666654332211
Q ss_pred HHHHHhhccccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 127 ILNQLLLHKKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 127 Il~~L~~~~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
+..++- .++.+. .. ++.++++.+.+.. . ...++.-||||||+|.+..
T Consensus 82 ------~~h~dv~el~~~~~----~~----vd~iR~l~~~~~~-~--------------p~~~~~kVVIIDEad~ls~-- 130 (504)
T PRK14963 82 ------GAHPDVLEIDAASN----NS----VEDVRDLREKVLL-A--------------PLRGGRKVYILDEAHMMSK-- 130 (504)
T ss_pred ------CCCCceEEeccccc----CC----HHHHHHHHHHHhh-c--------------cccCCCeEEEEECccccCH--
Confidence 111110 011000 01 1223333222110 0 0123455888999998743
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHh
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVL 282 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il 282 (537)
..+..|++..|..+ +++.+|++++.. ..+.....++ ...+.|++++.+++.+.|.... ....+.+..++.++
T Consensus 131 ---~a~naLLk~LEep~-~~t~~Il~t~~~-~kl~~~I~SR-c~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia 204 (504)
T PRK14963 131 ---SAFNALLKTLEEPP-EHVIFILATTEP-EKMPPTILSR-TQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA 204 (504)
T ss_pred ---HHHHHHHHHHHhCC-CCEEEEEEcCCh-hhCChHHhcc-eEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34566666655532 467888887653 3332222221 2589999999999998885321 12233455566666
Q ss_pred hccccccCC
Q 009352 283 RPFCRITKR 291 (537)
Q Consensus 283 ~~~~~~~r~ 291 (537)
....+.-|+
T Consensus 205 ~~s~GdlR~ 213 (504)
T PRK14963 205 RLADGAMRD 213 (504)
T ss_pred HHcCCCHHH
Confidence 555544444
No 64
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.86 E-value=3.9e-08 Score=98.64 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=38.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~ 124 (537)
+.+++|.||||||||++++.+.+.++.+++.++|....+...++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLV 64 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHh
Confidence 67899999999999999999999999999999998866655543
No 65
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=2.6e-08 Score=109.98 Aligned_cols=168 Identities=14% Similarity=0.091 Sum_probs=100.7
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.+.|.+..++.|...+... ..++ +++|||+|||||++++.+.+.+.... .-..|..|.+= ..+...
T Consensus 16 ~~viGq~~v~~~L~~~i~~~--~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C--------~~i~~g 85 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG--KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC--------KAITNG 85 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH--------HHHhcC
Confidence 35789999999999988752 2344 67899999999999999999876321 12257777532 222111
Q ss_pred c-cc--ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHH
Q 009352 135 K-KN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (537)
Q Consensus 135 ~-~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~ 211 (537)
. ++ ..++.+ ... ++.++++.+.+... ...++.-|+||||+|.|.. .-+.
T Consensus 86 ~~~dv~eidaas----~~~----vd~ir~i~~~v~~~---------------p~~~~~kViIIDE~~~Lt~-----~a~n 137 (559)
T PRK05563 86 SLMDVIEIDAAS----NNG----VDEIRDIRDKVKYA---------------PSEAKYKVYIIDEVHMLST-----GAFN 137 (559)
T ss_pred CCCCeEEeeccc----cCC----HHHHHHHHHHHhhC---------------cccCCeEEEEEECcccCCH-----HHHH
Confidence 0 10 001100 011 23344454432110 1134556888999999963 3456
Q ss_pred HHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 212 FLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 212 ~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+|++..|-.+ +++.+|++++. ++++...+.++ ...+.|++++.+|+.++|..
T Consensus 138 aLLKtLEepp-~~~ifIlatt~-~~ki~~tI~SR-c~~~~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 138 ALLKTLEEPP-AHVIFILATTE-PHKIPATILSR-CQRFDFKRISVEDIVERLKY 189 (559)
T ss_pred HHHHHhcCCC-CCeEEEEEeCC-hhhCcHHHHhH-heEEecCCCCHHHHHHHHHH
Confidence 7777666543 45777777654 34443222211 25789999999999998853
No 66
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.85 E-value=3.6e-08 Score=101.39 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=91.8
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
+.+.|.+.....|..++.. ...++ +++|||+|+|||++++.+.++++..+.++||.+ .....+. +
T Consensus 21 ~~~~~~~~~~~~l~~~~~~--~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~----~------- 86 (316)
T PHA02544 21 DECILPAADKETFKSIVKK--GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVR----N------- 86 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc--CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHH----H-------
Confidence 4578889999999998865 22345 556999999999999999999988888999865 2111110 0
Q ss_pred cccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhh
Q 009352 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (537)
Q Consensus 137 ~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl 216 (537)
.+..+.... ...+..-||||||+|.+.. ......|.++
T Consensus 87 ------------------------~l~~~~~~~--------------~~~~~~~vliiDe~d~l~~----~~~~~~L~~~ 124 (316)
T PHA02544 87 ------------------------RLTRFASTV--------------SLTGGGKVIIIDEFDRLGL----ADAQRHLRSF 124 (316)
T ss_pred ------------------------HHHHHHHhh--------------cccCCCeEEEEECcccccC----HHHHHHHHHH
Confidence 111110000 0011345788999998832 1223344554
Q ss_pred hhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 217 SDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 217 ~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.|..+ .++.+|++++.. ..+.+...++- ..+.|+.++.++..+|+.
T Consensus 125 le~~~-~~~~~Ilt~n~~-~~l~~~l~sR~-~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 125 MEAYS-KNCSFIITANNK-NGIIEPLRSRC-RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred HHhcC-CCceEEEEcCCh-hhchHHHHhhc-eEEEeCCCCHHHHHHHHH
Confidence 45432 467788887753 23322111111 478999999999887764
No 67
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.85 E-value=3.7e-08 Score=112.69 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=98.2
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|.+.++.+|..++... ..+...++||||||||||++++++.++++.++++++|.+..+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~------ 251 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK------ 251 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc------
Confidence 45789999999998876421 1233469999999999999999999999989999987543211
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC-
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK- 205 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~- 205 (537)
. .| +....++.+++... ...+.||+|||+|.+.....
T Consensus 252 ----~--------~g-----------~~~~~l~~lf~~a~-------------------~~~p~il~iDEid~l~~~r~~ 289 (733)
T TIGR01243 252 ----Y--------YG-----------ESEERLREIFKEAE-------------------ENAPSIIFIDEIDAIAPKREE 289 (733)
T ss_pred ----c--------cc-----------HHHHHHHHHHHHHH-------------------hcCCcEEEeehhhhhcccccC
Confidence 0 01 00112333443211 23467999999999864210
Q ss_pred C-----CChHHHHHhhhhhcC-CCcEEEEEEeCCCccccc---cCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 206 S-----SSILPFLFGLSDILK-MPEVGMIFISSTSPDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 206 ~-----~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
. ..++..|+.+.+-.. ...+.||..+|. ++.+. .+.+ +....|.|+.++.++..+||..
T Consensus 290 ~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~-~~~ld~al~r~g-Rfd~~i~i~~P~~~~R~~Il~~ 357 (733)
T TIGR01243 290 VTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNR-PDALDPALRRPG-RFDREIVIRVPDKRARKEILKV 357 (733)
T ss_pred CcchHHHHHHHHHHHHhhccccCCCEEEEeecCC-hhhcCHHHhCch-hccEEEEeCCcCHHHHHHHHHH
Confidence 0 124555666544332 123444445554 33332 2222 2235889999999999999964
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=2e-08 Score=109.68 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=109.9
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
.+.|-+..+..|...+... ..++ ++++||+|+|||++++.+++.+... .---.|..|.+-+.+-. +..
T Consensus 17 diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~-------~~~ 87 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINN-------NSF 87 (546)
T ss_pred HhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc-------CCC
Confidence 4678899999999988652 2344 7899999999999999999987631 11113555543222110 000
Q ss_pred ccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 136 KNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 136 ~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
++- .++.+ ... ++.++.+++.+-.. ...++..|+||||+|++.. .-...|
T Consensus 88 ~dlieidaas----~~g----vd~ir~ii~~~~~~---------------p~~g~~kViIIDEa~~ls~-----~a~naL 139 (546)
T PRK14957 88 IDLIEIDAAS----RTG----VEETKEILDNIQYM---------------PSQGRYKVYLIDEVHMLSK-----QSFNAL 139 (546)
T ss_pred CceEEeeccc----ccC----HHHHHHHHHHHHhh---------------hhcCCcEEEEEechhhccH-----HHHHHH
Confidence 000 00000 001 12234444332110 0123456888999999853 345677
Q ss_pred HhhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHhhccccc
Q 009352 214 FGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVLRPFCRI 288 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il~~~~~~ 288 (537)
++..|-.+ .++.+||++++.. ..+.+|. ..+.|.+++.+++.+.|..- .....+.+..++.++....+.
T Consensus 140 LK~LEepp-~~v~fIL~Ttd~~kil~tI~SRc-----~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gd 213 (546)
T PRK14957 140 LKTLEEPP-EYVKFILATTDYHKIPVTILSRC-----IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGS 213 (546)
T ss_pred HHHHhcCC-CCceEEEEECChhhhhhhHHHhe-----eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777543 4688899887631 2233333 68999999999999888531 112234455555555555555
Q ss_pred cCC
Q 009352 289 TKR 291 (537)
Q Consensus 289 ~r~ 291 (537)
.|+
T Consensus 214 lR~ 216 (546)
T PRK14957 214 LRD 216 (546)
T ss_pred HHH
Confidence 554
No 69
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.6e-08 Score=103.71 Aligned_cols=200 Identities=11% Similarity=0.062 Sum_probs=108.3
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCC-------CeEE-EeccccCCHHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSR-------PFVY-TSCLSCYSPRILFESIL 128 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~-------~~~~-inc~~~~s~~~l~~~Il 128 (537)
..+.|-++....|...+... ..++ ++|+||+|+|||++++.+++.+.. +... ..|..|.+ +..|.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~----c~~i~ 96 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPV----WRQIA 96 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHH----HHHHH
Confidence 45788899999999988762 3344 899999999999999999998753 1111 12334432 22222
Q ss_pred HHHhhc----cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 129 NQLLLH----KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 129 ~~L~~~----~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
..-... ..+...+....++.-.+ +.++.+.+. +.. ....++..|+||||+|.|-.
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~v----d~iR~l~~~-l~~--------------~~~~g~~rVviIDeAd~l~~-- 155 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITV----DEIRRVGHF-LSQ--------------TSGDGNWRIVIIDPADDMNR-- 155 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCH----HHHHHHHHH-hhh--------------ccccCCceEEEEEchhhcCH--
Confidence 110000 00000000000011112 223333322 110 01134456888999999953
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhhc
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRP 284 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~~ 284 (537)
+-..+|++..|-.+ .+..+|++++. ++++++.+.++ ...++|+|++.+|+.++|........+.+..+..++..
T Consensus 156 ---~aanaLLk~LEEpp-~~~~fiLit~~-~~~llptIrSR-c~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~ 229 (351)
T PRK09112 156 ---NAANAILKTLEEPP-ARALFILISHS-SGRLLPTIRSR-CQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQR 229 (351)
T ss_pred ---HHHHHHHHHHhcCC-CCceEEEEECC-hhhccHHHHhh-ccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 22345666656532 46777888866 34444333222 25999999999999999965322222334444444444
Q ss_pred cccccC
Q 009352 285 FCRITK 290 (537)
Q Consensus 285 ~~~~~r 290 (537)
..+..+
T Consensus 230 s~G~pr 235 (351)
T PRK09112 230 SKGSVR 235 (351)
T ss_pred cCCCHH
Confidence 443333
No 70
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=2.5e-08 Score=110.39 Aligned_cols=196 Identities=15% Similarity=0.107 Sum_probs=110.7
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEE-------EeccccCCHHHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVY-------TSCLSCYSPRILFESILN 129 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~~~-------inc~~~~s~~~l~~~Il~ 129 (537)
+.+.|.+..++.|.+.+... ..+ .+++|||+|+|||++++.+++.+...... -.|..|.+-+.+.+
T Consensus 24 ~dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~---- 97 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME---- 97 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc----
Confidence 35788999999999988652 234 48999999999999999999988632211 13555543222211
Q ss_pred HHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCCh
Q 009352 130 QLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSI 209 (537)
Q Consensus 130 ~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~l 209 (537)
+..++ ...+. ...... ++.++.+++.+... ...++.-|+||||+|.|.. .-
T Consensus 98 ---g~h~D-v~e~~-a~s~~g----vd~IReIie~~~~~---------------P~~a~~KVvIIDEad~Ls~-----~a 148 (598)
T PRK09111 98 ---GRHVD-VLEMD-AASHTG----VDDIREIIESVRYR---------------PVSARYKVYIIDEVHMLST-----AA 148 (598)
T ss_pred ---CCCCc-eEEec-ccccCC----HHHHHHHHHHHHhc---------------hhcCCcEEEEEEChHhCCH-----HH
Confidence 11110 00000 000011 23355555432110 0123445788899999953 33
Q ss_pred HHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhcccc
Q 009352 210 LPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCR 287 (537)
Q Consensus 210 L~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~ 287 (537)
...|++..|-.+ +++++||+++.. +++...+.+ ....+.|++++.+++.++|.... ....+.+..++.++....+
T Consensus 149 ~naLLKtLEePp-~~~~fIl~tte~-~kll~tI~S-Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G 225 (598)
T PRK09111 149 FNALLKTLEEPP-PHVKFIFATTEI-RKVPVTVLS-RCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG 225 (598)
T ss_pred HHHHHHHHHhCC-CCeEEEEEeCCh-hhhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 566777666543 578999988664 333222211 12589999999999998885421 1122334444555544444
Q ss_pred ccCC
Q 009352 288 ITKR 291 (537)
Q Consensus 288 ~~r~ 291 (537)
.-|+
T Consensus 226 dlr~ 229 (598)
T PRK09111 226 SVRD 229 (598)
T ss_pred CHHH
Confidence 4443
No 71
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.82 E-value=4e-08 Score=95.85 Aligned_cols=173 Identities=14% Similarity=0.217 Sum_probs=97.8
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhccccc
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHKKNA 138 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~ 138 (537)
+-+..+.+|..++.. ....+++|+|++|||||++++.+.+.+. ..++|++|.+....
T Consensus 21 ~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~------------------ 80 (226)
T TIGR03420 21 GNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA------------------ 80 (226)
T ss_pred CcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh------------------
Confidence 345566777776542 2356799999999999999999998763 57888888542210
Q ss_pred cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhh
Q 009352 139 FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSD 218 (537)
Q Consensus 139 ~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e 218 (537)
....++. + . ..-+|||||+|.+.. . .+....|+.+.+
T Consensus 81 -------------------~~~~~~~----~----------------~-~~~lLvIDdi~~l~~--~-~~~~~~L~~~l~ 117 (226)
T TIGR03420 81 -------------------DPEVLEG----L----------------E-QADLVCLDDVEAIAG--Q-PEWQEALFHLYN 117 (226)
T ss_pred -------------------HHHHHhh----c----------------c-cCCEEEEeChhhhcC--C-hHHHHHHHHHHH
Confidence 0001111 0 0 123788999999853 1 111223333322
Q ss_pred hcCCCcEEEEEEeCCCccc-------cccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhcccccc
Q 009352 219 ILKMPEVGMIFISSTSPDT-------YHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRIT 289 (537)
Q Consensus 219 ~~~~~~l~vI~Is~~~~~~-------f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~ 289 (537)
.....+..+|+.++..+.. +.++.. ....|.+||++.+|...++.... ....+-+..++.+... ..
T Consensus 118 ~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~--~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~---~~ 192 (226)
T TIGR03420 118 RVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA--WGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH---GS 192 (226)
T ss_pred HHHHcCCeEEEECCCChHHCCcccHHHHHHHh--cCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---cc
Confidence 1111134677766654422 122221 12589999999999999995321 1123344444444441 34
Q ss_pred CCHHHHHHHHHHh
Q 009352 290 KRVDELSTAFSLL 302 (537)
Q Consensus 290 r~l~~L~~~~~~l 302 (537)
+++.+|..+...+
T Consensus 193 gn~r~L~~~l~~~ 205 (226)
T TIGR03420 193 RDMGSLMALLDAL 205 (226)
T ss_pred CCHHHHHHHHHHH
Confidence 4666666666554
No 72
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.5e-08 Score=103.42 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHccc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcccccc
Q 009352 63 RRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAF 139 (537)
Q Consensus 63 Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~ 139 (537)
-+.-|+.|+..-... ..+.++|++|||||||||..++.+.++.+..|+....-+.. +
T Consensus 363 Le~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA------------------P-- 422 (630)
T KOG0742|consen 363 LEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA------------------P-- 422 (630)
T ss_pred HHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc------------------c--
Confidence 356677777765442 22567899999999999999999999999888866432211 0
Q ss_pred CCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccc-cC-------CCCChHH
Q 009352 140 NGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE-WD-------KSSSILP 211 (537)
Q Consensus 140 ~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~-~d-------~~~~lL~ 211 (537)
-| .+-|..++++|+.. + ..++.++|+|||+|.+.- +. -...|-.
T Consensus 423 lG----------~qaVTkiH~lFDWa----k--------------kS~rGLllFIDEADAFLceRnktymSEaqRsaLNA 474 (630)
T KOG0742|consen 423 LG----------AQAVTKIHKLFDWA----K--------------KSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNA 474 (630)
T ss_pred cc----------hHHHHHHHHHHHHH----h--------------hcccceEEEehhhHHHHHHhchhhhcHHHHHHHHH
Confidence 00 12233355566542 1 134678999999998762 21 0123335
Q ss_pred HHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 212 FLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 212 ~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.|||..+.+. .+.+|+.+|. |.+|+..+..+....|+||-...+|-..+|.
T Consensus 475 lLfRTGdqSr--divLvlAtNr-pgdlDsAV~DRide~veFpLPGeEERfkll~ 525 (630)
T KOG0742|consen 475 LLFRTGDQSR--DIVLVLATNR-PGDLDSAVNDRIDEVVEFPLPGEEERFKLLN 525 (630)
T ss_pred HHHHhccccc--ceEEEeccCC-ccchhHHHHhhhhheeecCCCChHHHHHHHH
Confidence 5788888753 5777777776 6778776666666799999999999999983
No 73
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=3.4e-08 Score=106.41 Aligned_cols=193 Identities=16% Similarity=0.170 Sum_probs=111.3
Q ss_pred cCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
.++|-+..++.|.+.+... ..+ .++++||+|+||||+++.+.+.+.... -.-.|..|.+=+. |.+. ..
T Consensus 14 dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~----i~~~---~~ 84 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCIS----IKNS---NH 84 (491)
T ss_pred HhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHH----Hhcc---CC
Confidence 4667788888888887652 334 599999999999999999999875211 1123555543222 1111 11
Q ss_pred cc--ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 136 KN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 136 ~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
++ ..++.+. .. ++.++.+++.+-. . ...++.-|+||||+|.|.. +-+.+|
T Consensus 85 ~Dv~eidaas~----~~----vddIR~Iie~~~~-~--------------P~~~~~KVvIIDEah~Ls~-----~A~NaL 136 (491)
T PRK14964 85 PDVIEIDAASN----TS----VDDIKVILENSCY-L--------------PISSKFKVYIIDEVHMLSN-----SAFNAL 136 (491)
T ss_pred CCEEEEecccC----CC----HHHHHHHHHHHHh-c--------------cccCCceEEEEeChHhCCH-----HHHHHH
Confidence 10 0011110 11 2234445543211 0 1123456888999999853 345677
Q ss_pred HhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHhhccccccCC
Q 009352 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVLRPFCRITKR 291 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il~~~~~~~r~ 291 (537)
++..|-.+ +++.+||+++.. +++...+.+ ....+.|.+++.+++.+.|..- .....+.+..+..++....+.-|+
T Consensus 137 LK~LEePp-~~v~fIlatte~-~Kl~~tI~S-Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 137 LKTLEEPA-PHVKFILATTEV-KKIPVTIIS-RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred HHHHhCCC-CCeEEEEEeCCh-HHHHHHHHH-hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 77777643 578889988653 333221111 1258999999999999998542 112234555666666655554444
No 74
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=2.5e-08 Score=113.86 Aligned_cols=196 Identities=17% Similarity=0.126 Sum_probs=111.4
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~--~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
+++|.+..+..|...+... ..++ +++|||+|||||++++.+.+.|..... .--|..|.+=+ .+....
T Consensus 16 eiiGqe~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~--------~~~~g~ 85 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV--------ALAPGG 85 (824)
T ss_pred HhcCcHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH--------HHHcCC
Confidence 4678899999999998752 3445 789999999999999999999863210 11366665522 221110
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
.... .+..-....+ --++.++.+.+.+... ...++.-|+||||+|+|.. .-...|++
T Consensus 86 ~~~~-dv~eidaas~--~~Vd~iR~l~~~~~~~---------------p~~~~~KV~IIDEad~lt~-----~a~NaLLK 142 (824)
T PRK07764 86 PGSL-DVTEIDAASH--GGVDDARELRERAFFA---------------PAESRYKIFIIDEAHMVTP-----QGFNALLK 142 (824)
T ss_pred CCCC-cEEEeccccc--CCHHHHHHHHHHHHhc---------------hhcCCceEEEEechhhcCH-----HHHHHHHH
Confidence 0000 0000000000 0133344443332110 0123455788999999964 34567778
Q ss_pred hhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhccccccC
Q 009352 216 LSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 216 l~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~~~r 290 (537)
+.|..+ .++++||+++. .++++..+.++ ...+.|.+.+.+++.++|.+... ...+....+..++....+..+
T Consensus 143 ~LEEpP-~~~~fIl~tt~-~~kLl~TIrSR-c~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 143 IVEEPP-EHLKFIFATTE-PDKVIGTIRSR-THHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred HHhCCC-CCeEEEEEeCC-hhhhhHHHHhh-eeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 777654 57899998865 34544322221 25899999999999988854211 112234444555554444333
No 75
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.80 E-value=1.5e-08 Score=105.77 Aligned_cols=202 Identities=16% Similarity=0.135 Sum_probs=112.0
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.+.|.++.+..|...+... ..+ .+++|||+|+|||++++.+++.+... -..-.|..|.+-+.+.. +.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~-------~~ 84 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS-------GS 84 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc-------CC
Confidence 35789999999999988652 233 47899999999999999999987532 11235666665433221 11
Q ss_pred ccc--ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 135 KKN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 135 ~~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
.++ ..+|. ...... .++.+++.+.. ....+..-||||||+|.+.. .....
T Consensus 85 ~~~~~~~~~~----~~~~~~----~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~-----~~~~~ 136 (355)
T TIGR02397 85 SLDVIEIDAA----SNNGVD----DIREILDNVKY---------------APSSGKYKVYIIDEVHMLSK-----SAFNA 136 (355)
T ss_pred CCCEEEeecc----ccCCHH----HHHHHHHHHhc---------------CcccCCceEEEEeChhhcCH-----HHHHH
Confidence 110 00110 011111 23334332211 00123445888999998853 23445
Q ss_pred HHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccC
Q 009352 213 LFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 213 L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r 290 (537)
|++..|..+ +++.+|++++.+ +.+.....++ ...+.|++++.+|+.++|.... ....+-+..++.+++... +
T Consensus 137 Ll~~le~~~-~~~~lIl~~~~~-~~l~~~l~sr-~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~---g 210 (355)
T TIGR02397 137 LLKTLEEPP-EHVVFILATTEP-HKIPATILSR-CQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAAD---G 210 (355)
T ss_pred HHHHHhCCc-cceeEEEEeCCH-HHHHHHHHhh-eeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---C
Confidence 556555432 467778887653 3333222111 1588999999999999995311 111233444555554443 3
Q ss_pred CHHHHHHHHHHh
Q 009352 291 RVDELSTAFSLL 302 (537)
Q Consensus 291 ~l~~L~~~~~~l 302 (537)
++..+...+.++
T Consensus 211 ~~~~a~~~lekl 222 (355)
T TIGR02397 211 SLRDALSLLDQL 222 (355)
T ss_pred ChHHHHHHHHHH
Confidence 555555554444
No 76
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.80 E-value=1.3e-07 Score=94.97 Aligned_cols=215 Identities=18% Similarity=0.220 Sum_probs=130.8
Q ss_pred hcCCChHH---HHHHHHHHHcccC-CCCCCeEEECCCCCCHHHHHHHHHHhcC---------CCeEEEeccccCCHHHHH
Q 009352 58 SRFPGRRV---QILELLRLLGTLN-SSMPPLFVYGSASTGKTSIIIQVFRHLS---------RPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 58 ~~~~~Re~---qi~~L~~ll~~~~-~~~~~l~I~G~~GtGKTsiv~~vl~~l~---------~~~~~inc~~~~s~~~l~ 124 (537)
++|.|... .++.|..++...- ..+|+++|+|+++.|||++++.+.+... .++++|.+....+.+.||
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 45655433 3456666665432 2468899999999999999999997654 478999998889999999
Q ss_pred HHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
..|++++.-...+ -++... +....-.++.. -+.-+|||||++.+....
T Consensus 114 ~~IL~~lgaP~~~----------~~~~~~----~~~~~~~llr~------------------~~vrmLIIDE~H~lLaGs 161 (302)
T PF05621_consen 114 SAILEALGAPYRP----------RDRVAK----LEQQVLRLLRR------------------LGVRMLIIDEFHNLLAGS 161 (302)
T ss_pred HHHHHHhCcccCC----------CCCHHH----HHHHHHHHHHH------------------cCCcEEEeechHHHhccc
Confidence 9999999543211 112222 11111122221 134588899999986421
Q ss_pred --CCCChHHHHHhhhhhcCCCcEEEEEEeCCCc-------cccccCCCCCCCceeecCCCCHH-HHHHHHHh-------c
Q 009352 205 --KSSSILPFLFGLSDILKMPEVGMIFISSTSP-------DTYHSNTGYVAPIHVYFPECTED-DLRQIFMR-------N 267 (537)
Q Consensus 205 --~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~-------~~f~~r~~~~~p~~I~FppYt~~-el~~IL~~-------~ 267 (537)
...+++..|-.|.+-+ ++.+|.+++..- .++-+|+ ..+..|++..+ |....|.. .
T Consensus 162 ~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~~A~~al~~D~QLa~RF-----~~~~Lp~W~~d~ef~~LL~s~e~~LPLr 233 (302)
T PF05621_consen 162 YRKQREFLNALKFLGNEL---QIPIVGVGTREAYRALRTDPQLASRF-----EPFELPRWELDEEFRRLLASFERALPLR 233 (302)
T ss_pred HHHHHHHHHHHHHHhhcc---CCCeEEeccHHHHHHhccCHHHHhcc-----CCccCCCCCCCcHHHHHHHHHHHhCCCC
Confidence 2245677777776654 477888876421 2222332 35666788764 44444422 1
Q ss_pred CCChhhhh-HHHHHHhhccccccCCHHHHHHHHHHhhhhhhhhhhcCCCCCCh
Q 009352 268 QANQKLYS-SFLDIVLRPFCRITKRVDELSTAFSLLFKRYCEPLSDLGVLPNG 319 (537)
Q Consensus 268 r~~~~l~~-~~~~~il~~~~~~~r~l~~L~~~~~~lw~~y~~P~~~~~~~~~e 319 (537)
+++ .+.. .....+++...+.++++..|...|+.. .|.+|....+.
T Consensus 234 ~~S-~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~------AI~sG~E~It~ 279 (302)
T PF05621_consen 234 KPS-NLASPELARRIHERSEGLIGELSRLLNAAAIA------AIRSGEERITR 279 (302)
T ss_pred CCC-CCCCHHHHHHHHHHcCCchHHHHHHHHHHHHH------HHhcCCceecH
Confidence 122 2333 344667777777777766665555433 67777665543
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=3.5e-08 Score=108.09 Aligned_cols=170 Identities=15% Similarity=0.087 Sum_probs=97.3
Q ss_pred cCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
.+.|++..+..|...+... ..+ .++++||+|+|||++++.+++.+.... ..--|..|.+-+. +....
T Consensus 17 dIIGQe~iv~~L~~aI~~~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~--------i~~~~ 86 (605)
T PRK05896 17 QIIGQELIKKILVNAILNN--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES--------INTNQ 86 (605)
T ss_pred HhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH--------HHcCC
Confidence 4679999999999988552 233 488999999999999999999875311 1124666643222 11111
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
......+. ...-.. ++.++.+++.+... + ..++.-|+||||+|.|.. .-..+|++
T Consensus 87 h~DiieId-aas~ig----Vd~IReIi~~~~~~--------------P-~~~~~KVIIIDEad~Lt~-----~A~NaLLK 141 (605)
T PRK05896 87 SVDIVELD-AASNNG----VDEIRNIIDNINYL--------------P-TTFKYKVYIIDEAHMLST-----SAWNALLK 141 (605)
T ss_pred CCceEEec-cccccC----HHHHHHHHHHHHhc--------------h-hhCCcEEEEEechHhCCH-----HHHHHHHH
Confidence 00000000 000001 22344444332110 0 112334688999999853 23456777
Q ss_pred hhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 216 LSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 216 l~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
..|-.+ +++.+||+++. +.++...+.++ ...+.|++++.+++..+|..
T Consensus 142 tLEEPp-~~tvfIL~Tt~-~~KLl~TI~SR-cq~ieF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 142 TLEEPP-KHVVFIFATTE-FQKIPLTIISR-CQRYNFKKLNNSELQELLKS 189 (605)
T ss_pred HHHhCC-CcEEEEEECCC-hHhhhHHHHhh-hhhcccCCCCHHHHHHHHHH
Confidence 666543 46777887765 34443221111 25899999999999988853
No 78
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.78 E-value=5.7e-08 Score=104.99 Aligned_cols=165 Identities=19% Similarity=0.273 Sum_probs=96.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (537)
.++++||||+|+|||++++++.+++ +..++|++|.+ +...+...+... ...+|.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~---------------~~~~~~ 206 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN---------------TMEEFK 206 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC---------------cHHHHH
Confidence 4679999999999999999999886 34578888754 233333333110 111221
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC-CChHHHHHhhhhhcCCCcEEEEEEeCCC
Q 009352 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS-SSILPFLFGLSDILKMPEVGMIFISSTS 234 (537)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~-~~lL~~L~rl~e~~~~~~l~vI~Is~~~ 234 (537)
. .+ ...-+|||||+|.+...+.. .+++..|-.+.+. +..+|+.++.+
T Consensus 207 ~----~~------------------------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~----~~~iiits~~~ 254 (450)
T PRK00149 207 E----KY------------------------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA----GKQIVLTSDRP 254 (450)
T ss_pred H----HH------------------------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC----CCcEEEECCCC
Confidence 1 11 12348899999998542111 2344434344443 34467777766
Q ss_pred ccc---cccCCCCC--CCceeecCCCCHHHHHHHHHhcCCC--hhhhhHHHHHHhhcccc-ccCCHHHHHHHHHHh
Q 009352 235 PDT---YHSNTGYV--APIHVYFPECTEDDLRQIFMRNQAN--QKLYSSFLDIVLRPFCR-ITKRVDELSTAFSLL 302 (537)
Q Consensus 235 ~~~---f~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~~--~~l~~~~~~~il~~~~~-~~r~l~~L~~~~~~l 302 (537)
|.. +..+..++ ....+.|++|+.++..+||...... ..+- +.+++.+.. ..+|+.+|..+...|
T Consensus 255 p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~----~e~l~~ia~~~~~~~R~l~~~l~~l 326 (450)
T PRK00149 255 PKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLP----DEVLEFIAKNITSNVRELEGALNRL 326 (450)
T ss_pred HHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHcCcCCCHHHHHHHHHHH
Confidence 533 32222222 1258999999999999999643211 1222 444554443 445788887777777
No 79
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=4.4e-08 Score=107.41 Aligned_cols=193 Identities=13% Similarity=0.125 Sum_probs=109.8
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
.+.|-+..+..|...+... ..++ +++|||+|+|||++++.+++.+.... ..-.|..|.+-+.+-. +..
T Consensus 17 divGq~~v~~~L~~~i~~~--~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~-------~~~ 87 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQ--RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS-------GRF 87 (527)
T ss_pred HhcCcHHHHHHHHHHHHcC--CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc-------CCC
Confidence 4678899999999888652 3344 68999999999999999999986321 1124666643222110 110
Q ss_pred ccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 136 KNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 136 ~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
++- .++.+ -.. ++.++++++.+... ...++.-|+||||+|.|.. .-..+|
T Consensus 88 ~d~~ei~~~~----~~~----vd~ir~l~~~~~~~---------------p~~~~~kVvIIDEad~ls~-----~a~naL 139 (527)
T PRK14969 88 VDLIEVDAAS----NTQ----VDAMRELLDNAQYA---------------PTRGRFKVYIIDEVHMLSK-----SAFNAM 139 (527)
T ss_pred CceeEeeccc----cCC----HHHHHHHHHHHhhC---------------cccCCceEEEEcCcccCCH-----HHHHHH
Confidence 100 00000 011 23355555432110 1134556888999999863 234567
Q ss_pred HhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccCC
Q 009352 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITKR 291 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r~ 291 (537)
++..|-.+ .++.+||+++++ ..+...+.+ ....+.|++++.+++.+.|.... ....+.+..+..+.....+..|+
T Consensus 140 LK~LEepp-~~~~fIL~t~d~-~kil~tI~S-Rc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 140 LKTLEEPP-EHVKFILATTDP-QKIPVTVLS-RCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRD 216 (527)
T ss_pred HHHHhCCC-CCEEEEEEeCCh-hhCchhHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 77666543 568899998764 333322111 12689999999999998774311 11223444445544444444444
No 80
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5e-08 Score=105.88 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=126.5
Q ss_pred hcCCChHHHHHHHHHHHccc-C---CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 58 SRFPGRRVQILELLRLLGTL-N---SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-~---~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
+..+|=++.-+.+..++.=. . ..++.+-++||||+|||++.+.+++.|++.|..++.-..... ..+.|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv--------AeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV--------AEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH--------Hhhcc
Confidence 45677777777777776321 1 134557899999999999999999999999998875443321 23344
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
|... |- ..+=.++++.|+... ...| ++.|||+|+|.. +...+--.+|
T Consensus 483 HRRT----YV---------------GAMPGkiIq~LK~v~------------t~NP-liLiDEvDKlG~-g~qGDPasAL 529 (906)
T KOG2004|consen 483 HRRT----YV---------------GAMPGKIIQCLKKVK------------TENP-LILIDEVDKLGS-GHQGDPASAL 529 (906)
T ss_pred ccee----ee---------------ccCChHHHHHHHhhC------------CCCc-eEEeehhhhhCC-CCCCChHHHH
Confidence 4221 10 001112333333211 2344 566799999984 2223333445
Q ss_pred Hhhhhhc----------CCC--cEEEEEEeCC-----CccccccCCCCCCCceeecCCCCHHHHHHHHHhcCC-----Ch
Q 009352 214 FGLSDIL----------KMP--EVGMIFISST-----SPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA-----NQ 271 (537)
Q Consensus 214 ~rl~e~~----------~~~--~l~vI~Is~~-----~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~-----~~ 271 (537)
+.+.+-- ++| =..|+||++. .|.+++.|. ..|..+-|..+|-.+|-.+.-. .-
T Consensus 530 LElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRM-----EvIelsGYv~eEKv~IA~~yLip~a~~~~ 604 (906)
T KOG2004|consen 530 LELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRM-----EVIELSGYVAEEKVKIAERYLIPQALKDC 604 (906)
T ss_pred HHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhh-----heeeccCccHHHHHHHHHHhhhhHHHHHc
Confidence 4442210 011 0356777554 356777776 5899999999999999865422 23
Q ss_pred hhhhHHH----HHHhhccccccCC--HHHHHHHHHHhhhhhhhhhhcC
Q 009352 272 KLYSSFL----DIVLRPFCRITKR--VDELSTAFSLLFKRYCEPLSDL 313 (537)
Q Consensus 272 ~l~~~~~----~~il~~~~~~~r~--l~~L~~~~~~lw~~y~~P~~~~ 313 (537)
++.+.++ ++++..+..|||. +..|+....++|++-.--|.++
T Consensus 605 gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~ 652 (906)
T KOG2004|consen 605 GLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEG 652 (906)
T ss_pred CCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555665 3455566678884 7888887777776654444443
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.76 E-value=7.7e-08 Score=110.98 Aligned_cols=183 Identities=14% Similarity=0.080 Sum_probs=102.9
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCe--EEE-eccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPF--VYT-SCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~--~~i-nc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.+.||+++++++...|... ..++++++||||||||++++.+++.+.... .++ |+. .+.. =+..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~-i~~l------~l~~l~-- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVR-LLSL------DLGLLQ-- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCe-EEEe------ehhhhh--
Confidence 45899999999999987552 346799999999999999999998864210 111 110 0000 001110
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---CCCChHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---KSSSILP 211 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d---~~~~lL~ 211 (537)
.| .....+|...++.+++.+.. .+.++||+|||++.|.... +..+. .
T Consensus 256 -----ag------~~~~ge~e~~lk~ii~e~~~------------------~~~~~ILfIDEih~l~~~g~~~~~~d~-~ 305 (852)
T TIGR03345 256 -----AG------ASVKGEFENRLKSVIDEVKA------------------SPQPIILFIDEAHTLIGAGGQAGQGDA-A 305 (852)
T ss_pred -----cc------cccchHHHHHHHHHHHHHHh------------------cCCCeEEEEeChHHhccCCCccccccH-H
Confidence 00 01223566677777765421 2356899999999996421 22231 1
Q ss_pred HHHhhhhhcCCCcEEEEEEeCCCc-cc-------cccCCCCCCCceeecCCCCHHHHHHHHHhcCC------ChhhhhHH
Q 009352 212 FLFGLSDILKMPEVGMIFISSTSP-DT-------YHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA------NQKLYSSF 277 (537)
Q Consensus 212 ~L~rl~e~~~~~~l~vI~Is~~~~-~~-------f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~------~~~l~~~~ 277 (537)
.++. +-+. .-.+.+|..++... .+ +.+|. ..|.+++++.++..+||..... ...+.+..
T Consensus 306 n~Lk-p~l~-~G~l~~IgaTT~~e~~~~~~~d~AL~rRf-----~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~a 378 (852)
T TIGR03345 306 NLLK-PALA-RGELRTIAATTWAEYKKYFEKDPALTRRF-----QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEA 378 (852)
T ss_pred HHhh-HHhh-CCCeEEEEecCHHHHhhhhhccHHHHHhC-----eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHH
Confidence 1111 1111 12466666655421 12 22222 4899999999999999742221 12234455
Q ss_pred HHHHhhccccc
Q 009352 278 LDIVLRPFCRI 288 (537)
Q Consensus 278 ~~~il~~~~~~ 288 (537)
+..++....+|
T Consensus 379 l~~~~~ls~ry 389 (852)
T TIGR03345 379 VVAAVELSHRY 389 (852)
T ss_pred HHHHHHHcccc
Confidence 55555544443
No 82
>PRK08727 hypothetical protein; Validated
Probab=98.76 E-value=1.5e-07 Score=92.83 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=91.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFV 158 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L 158 (537)
.+++|+|++|||||.+++++..++ +.+++|+++.+ + ...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~--------------~-----------------------~~~~ 84 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA--------------A-----------------------AGRL 84 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH--------------h-----------------------hhhH
Confidence 469999999999999999987654 34667776422 0 0011
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcccc
Q 009352 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY 238 (537)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f 238 (537)
.+.++.+ ...-+|||||+|.+.... .--..|+.+.+........||++++..|..+
T Consensus 85 ~~~~~~l---------------------~~~dlLiIDDi~~l~~~~---~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 85 RDALEAL---------------------EGRSLVALDGLESIAGQR---EDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HHHHHHH---------------------hcCCEEEEeCcccccCCh---HHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 1122211 122488999999886422 1123445554332223567999999876544
Q ss_pred ---ccCCCCC--CCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhccccccCCHHHHHHHHHHhh
Q 009352 239 ---HSNTGYV--APIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCRITKRVDELSTAFSLLF 303 (537)
Q Consensus 239 ---~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~~~r~l~~L~~~~~~lw 303 (537)
.+...++ ....+.|++|+.+++.+||.+... ...+-+..++.++..+. ||+..+..+...+.
T Consensus 141 ~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~---rd~r~~l~~L~~l~ 209 (233)
T PRK08727 141 ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGE---RELAGLVALLDRLD 209 (233)
T ss_pred hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence 2222222 125899999999999999964211 11223333333333332 56666666665554
No 83
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.76 E-value=6.3e-08 Score=104.28 Aligned_cols=172 Identities=16% Similarity=0.252 Sum_probs=98.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (537)
..++||||++|+|||.+++++.+++. ..++|+++ ..++..+..++....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh--------------------
Confidence 46799999999999999999998653 46677665 345666666653210
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh-hhhhcCCCcEEEEEEeCCC
Q 009352 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG-LSDILKMPEVGMIFISSTS 234 (537)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r-l~e~~~~~~l~vI~Is~~~ 234 (537)
+.++.+.+.+ ...-+|||||++.+...+..++.|..++. +.+ .+-.+|+.|+.+
T Consensus 195 ----~~~~~~~~~~-----------------~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~----~~k~iIltsd~~ 249 (450)
T PRK14087 195 ----KEIEQFKNEI-----------------CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE----NDKQLFFSSDKS 249 (450)
T ss_pred ----hHHHHHHHHh-----------------ccCCEEEEeccccccCCHHHHHHHHHHHHHHHH----cCCcEEEECCCC
Confidence 0112221111 12348899999988632111233333332 222 233577777766
Q ss_pred ccc---cccCCCCC--CCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhhcccc-ccCCHHHHHHHHHHhh
Q 009352 235 PDT---YHSNTGYV--APIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCR-ITKRVDELSTAFSLLF 303 (537)
Q Consensus 235 ~~~---f~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~~~~~-~~r~l~~L~~~~~~lw 303 (537)
|+. +..|..++ ....+.+.+++.++..+||.+.....++...+-+.+++.+.. ..+|+..|..++..+.
T Consensus 250 P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 250 PELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLN 324 (450)
T ss_pred HHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 522 22332221 225788999999999999964322212100122445555554 3357888888887774
No 84
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.75 E-value=1.5e-07 Score=101.85 Aligned_cols=134 Identities=12% Similarity=0.093 Sum_probs=81.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (537)
..+++|||||||||.+++++..+++.+++.++|....+ ...+. + ...++++
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~----------~~vGe--------s-----------e~~l~~~ 310 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG----------GIVGE--------S-----------ESRMRQM 310 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc----------cccCh--------H-----------HHHHHHH
Confidence 45999999999999999999999999999998743211 11110 0 0124444
Q ss_pred HHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc-CC------CCChHHHHHhhhhhcCCCcEEEEEEeCCC
Q 009352 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-DK------SSSILPFLFGLSDILKMPEVGMIFISSTS 234 (537)
Q Consensus 162 l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~-d~------~~~lL~~L~rl~e~~~~~~l~vI~Is~~~ 234 (537)
+... + ...++||+|||+|.+... +. ...++..|+.+.+-. ..++-||..+|.+
T Consensus 311 f~~A----~---------------~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-~~~V~vIaTTN~~ 370 (489)
T CHL00195 311 IRIA----E---------------ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-KSPVFVVATANNI 370 (489)
T ss_pred HHHH----H---------------hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-CCceEEEEecCCh
Confidence 4321 1 235789999999988541 10 112444444432221 2346666666654
Q ss_pred ccccc---cCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 235 PDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 235 ~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+.+. .|.|.+ ...|+|+.++.++-.+|+..
T Consensus 371 -~~Ld~allR~GRF-D~~i~v~lP~~~eR~~Il~~ 403 (489)
T CHL00195 371 -DLLPLEILRKGRF-DEIFFLDLPSLEEREKIFKI 403 (489)
T ss_pred -hhCCHHHhCCCcC-CeEEEeCCcCHHHHHHHHHH
Confidence 2222 233322 25889999999999999953
No 85
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.75 E-value=4.1e-08 Score=95.76 Aligned_cols=164 Identities=23% Similarity=0.322 Sum_probs=94.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (537)
..++||||++|+|||.+++++.++. +.+++|+++ ..+...+...+... ...+|.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~---------------~~~~~~ 92 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRDG---------------EIEEFK 92 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHTT---------------SHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHcc---------------cchhhh
Confidence 4579999999999999999998764 356788876 34555555555321 122222
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc
Q 009352 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP 235 (537)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~ 235 (537)
+ .++ ..=+|+||++|.+... +..-..|+.+.+.....+-.+|+.|+.+|
T Consensus 93 ~-----------~~~-----------------~~DlL~iDDi~~l~~~---~~~q~~lf~l~n~~~~~~k~li~ts~~~P 141 (219)
T PF00308_consen 93 D-----------RLR-----------------SADLLIIDDIQFLAGK---QRTQEELFHLFNRLIESGKQLILTSDRPP 141 (219)
T ss_dssp H-----------HHC-----------------TSSEEEEETGGGGTTH---HHHHHHHHHHHHHHHHTTSEEEEEESS-T
T ss_pred h-----------hhh-----------------cCCEEEEecchhhcCc---hHHHHHHHHHHHHHHhhCCeEEEEeCCCC
Confidence 2 111 1237889999999642 22233455544433223467888887776
Q ss_pred ccc-------ccCCCCCCCceeecCCCCHHHHHHHHHhcCCC--hhhhhHHHHHHhhcccc-ccCCHHHHHHHHHHh
Q 009352 236 DTY-------HSNTGYVAPIHVYFPECTEDDLRQIFMRNQAN--QKLYSSFLDIVLRPFCR-ITKRVDELSTAFSLL 302 (537)
Q Consensus 236 ~~f-------~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~--~~l~~~~~~~il~~~~~-~~r~l~~L~~~~~~l 302 (537)
..+ .+|.. .-..+.+.+++.++..+||...... ..+- +.+++-+.. ..+++.+|..+...|
T Consensus 142 ~~l~~~~~~L~SRl~--~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~----~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 142 SELSGLLPDLRSRLS--WGLVVELQPPDDEDRRRILQKKAKERGIELP----EEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp TTTTTS-HHHHHHHH--CSEEEEE----HHHHHHHHHHHHHHTT--S-----HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred ccccccChhhhhhHh--hcchhhcCCCCHHHHHHHHHHHHHHhCCCCc----HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 443 22322 2257888999999999999642211 1122 344444443 456888888888777
No 86
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.1e-07 Score=89.72 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=101.0
Q ss_pred hhcCCChHHHHHHHHHHHcccCC-----------CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTLNS-----------SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~-----------~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~ 125 (537)
.+-+-|-++||.++...+.-... ...-+++|||||||||.+++++..+....++.|+..+
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse--------- 216 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE--------- 216 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH---------
Confidence 34467789999999998865432 1124999999999999999999999887888776533
Q ss_pred HHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc--
Q 009352 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-- 203 (537)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~-- 203 (537)
+++...+. | +..+ +.+| -..++ .-+-+|+.||+|.+...
T Consensus 217 -lvqk~ige------g----------srmv---relf----vmare---------------hapsiifmdeidsigs~r~ 257 (404)
T KOG0728|consen 217 -LVQKYIGE------G----------SRMV---RELF----VMARE---------------HAPSIIFMDEIDSIGSSRV 257 (404)
T ss_pred -HHHHHhhh------h----------HHHH---HHHH----HHHHh---------------cCCceEeeecccccccccc
Confidence 34444332 1 1111 2222 22222 24678999999999642
Q ss_pred C---C-CCCh----HHHHHhhhhhcCCCcEEEEEEeCCC--ccccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 204 D---K-SSSI----LPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 204 d---~-~~~l----L~~L~rl~e~~~~~~l~vI~Is~~~--~~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
+ + -+++ |..|-.|.-+-...|+.||+.+|-. .|+-+-|.|. ....|.|||.+.+--.+||.
T Consensus 258 e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgr-idrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 258 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGR-IDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred cCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCc-ccccccCCCCCHHHHHHHHH
Confidence 1 1 1222 2222222111113579999998864 2444445552 33589999999999999984
No 87
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.74 E-value=2.6e-07 Score=101.38 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=96.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (537)
..++||||++|+|||.+++++.+++ +..+.|++|.+ +...+...+... ....|.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee------f~~el~~al~~~---------------~~~~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE------FTNEFINSIRDG---------------KGDSFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHhc---------------cHHHHH
Confidence 3569999999999999999999875 34678887643 333333333110 111111
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc
Q 009352 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP 235 (537)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~ 235 (537)
. .+ ...=+||||+++.+...+..++ .||.+.+.....+-.||+.|+..|
T Consensus 373 ~----~y------------------------~~~DLLlIDDIq~l~gke~tqe---eLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 373 R----RY------------------------REMDILLVDDIQFLEDKESTQE---EFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred H----Hh------------------------hcCCEEEEehhccccCCHHHHH---HHHHHHHHHHhcCCCEEEecCCCh
Confidence 1 11 1234788999999964221122 233332222112456777777765
Q ss_pred cc---cccCCCCC--CCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhhccc-cccCCHHHHHHHHHHh
Q 009352 236 DT---YHSNTGYV--APIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC-RITKRVDELSTAFSLL 302 (537)
Q Consensus 236 ~~---f~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~~~~-~~~r~l~~L~~~~~~l 302 (537)
.. +..+..++ ....+.+.+++.+...+||.+......+. .=+.+++-+. +..+++.+|..++..|
T Consensus 422 ~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~--l~~eVi~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 422 KQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLN--APPEVLEFIASRISRNIRELEGALIRV 492 (617)
T ss_pred HhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32 22222221 23578999999999999996432222110 0134444443 3567899999988888
No 88
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.73 E-value=6.2e-08 Score=106.48 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=43.8
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLS 116 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l----------~~~~~~inc~~ 116 (537)
.+.|.+..+..|...+.. ....+++||||||||||++++.+.+.. +.+++.+||..
T Consensus 66 ~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred HeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 578889999988876533 234579999999999999999998642 24688899864
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.73 E-value=6.4e-08 Score=111.82 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=95.4
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~----------~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.||+++|+++...|... ..++++++||||||||++++.+...+. ..++.+++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~------------ 244 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG------------ 244 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH------------
Confidence 45799999999999998763 345799999999999999999998753 233334321
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC-
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS- 206 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~- 206 (537)
.+.. |.. ...+|..+++.+++.+. ...++||+|||++.|......
T Consensus 245 --~l~a-------g~~------~~ge~e~rl~~i~~~~~-------------------~~~~~ILfiDEih~l~~~g~~~ 290 (821)
T CHL00095 245 --LLLA-------GTK------YRGEFEERLKRIFDEIQ-------------------ENNNIILVIDEVHTLIGAGAAE 290 (821)
T ss_pred --HHhc-------cCC------CccHHHHHHHHHHHHHH-------------------hcCCeEEEEecHHHHhcCCCCC
Confidence 1110 100 12256666777766532 124689999999999742110
Q ss_pred CC-hHHHHHhhhhhcCCCcEEEEEEeCCCc-cccccCCC--CCCCceeecCCCCHHHHHHHHHh
Q 009352 207 SS-ILPFLFGLSDILKMPEVGMIFISSTSP-DTYHSNTG--YVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 207 ~~-lL~~L~rl~e~~~~~~l~vI~Is~~~~-~~f~~r~~--~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.. -...+++ ..+. .-.+.+|..++... ..+...-. .+.-..|.++.++.+|+..|+..
T Consensus 291 g~~~~a~lLk-p~l~-rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 291 GAIDAANILK-PALA-RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred CcccHHHHhH-HHHh-CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 11 1222222 1221 13577887776532 11111000 11114678899999999999853
No 90
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=1.5e-07 Score=102.34 Aligned_cols=201 Identities=15% Similarity=0.134 Sum_probs=113.4
Q ss_pred CCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHH
Q 009352 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFE 125 (537)
Q Consensus 49 ~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~ 125 (537)
+|.+++ .+.|=+.....|...+... ..++ +++|||+|+|||++++.+++.+... .-.-.|..|.+-+.+.+
T Consensus 9 RP~~fd----eiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 9 RPKHFD----ELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred CCCCHH----HccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 444544 4667688888888888652 3455 5799999999999999999987421 11123555543332211
Q ss_pred HHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC
Q 009352 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (537)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~ 205 (537)
+..+.-..+-+...+ . ++.++..++.... . ...++.-|+||||+|.|..
T Consensus 83 -------~~h~dv~eldaas~~--g----Id~IRelie~~~~-------~--------P~~~~~KVvIIDEad~Lt~--- 131 (535)
T PRK08451 83 -------NRHIDIIEMDAASNR--G----IDDIRELIEQTKY-------K--------PSMARFKIFIIDEVHMLTK--- 131 (535)
T ss_pred -------cCCCeEEEecccccc--C----HHHHHHHHHHHhh-------C--------cccCCeEEEEEECcccCCH---
Confidence 111100000000000 1 2234444432110 0 1123456888999999953
Q ss_pred CCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHhh
Q 009352 206 SSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVLR 283 (537)
Q Consensus 206 ~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il~ 283 (537)
+-..+|++..|-.+ +++++||+++.+ ..+...+.++ ...++|.+.+.+++.+.|..- .....+.+..+..++.
T Consensus 132 --~A~NALLK~LEEpp-~~t~FIL~ttd~-~kL~~tI~SR-c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 132 --EAFNALLKTLEEPP-SYVKFILATTDP-LKLPATILSR-TQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred --HHHHHHHHHHhhcC-CceEEEEEECCh-hhCchHHHhh-ceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44567788777653 568899998774 3433222222 268999999999998888421 1122334455555555
Q ss_pred ccccccCC
Q 009352 284 PFCRITKR 291 (537)
Q Consensus 284 ~~~~~~r~ 291 (537)
...+.-|+
T Consensus 207 ~s~GdlR~ 214 (535)
T PRK08451 207 SGNGSLRD 214 (535)
T ss_pred HcCCcHHH
Confidence 55555554
No 91
>PF14516 AAA_35: AAA-like domain
Probab=98.72 E-value=6.9e-07 Score=92.64 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=124.7
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC-----CHHHHHHHHHHHH
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY-----SPRILFESILNQL 131 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~-----s~~~l~~~Il~~L 131 (537)
.+.|...-+++...+.. ++..+.|+||..+||||++..+++.+ +...+++||.... +...++..++..+
T Consensus 13 Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred ccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 45677555666665543 36679999999999999999998776 4688999988642 3566777777777
Q ss_pred hhccccccCCCCc--cccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC-CCCC
Q 009352 132 LLHKKNAFNGYSS--AKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-KSSS 208 (537)
Q Consensus 132 ~~~~~~~~~g~~~--~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-~~~~ 208 (537)
.....-.. .... ...-.....+...+.+.+ +. ...+++||+|||+|.+.+.. -..+
T Consensus 90 ~~~L~l~~-~l~~~w~~~~~~~~~~~~~~~~~l---l~-----------------~~~~~lVL~iDEiD~l~~~~~~~~d 148 (331)
T PF14516_consen 90 SRQLKLDE-KLDEYWDEEIGSKISCTEYFEEYL---LK-----------------QIDKPLVLFIDEIDRLFEYPQIADD 148 (331)
T ss_pred HHHcCCCh-hHHHHHHHhcCChhhHHHHHHHHH---Hh-----------------cCCCCEEEEEechhhhccCcchHHH
Confidence 65432100 0000 000001112222222211 11 13478999999999998621 1124
Q ss_pred hHHHHHhhhhhcC----CCcEEEEEEeCCCccccccCCCCC--CCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHh
Q 009352 209 ILPFLFGLSDILK----MPEVGMIFISSTSPDTYHSNTGYV--APIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVL 282 (537)
Q Consensus 209 lL~~L~rl~e~~~----~~~l~vI~Is~~~~~~f~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il 282 (537)
++..|..+++... ..++++|++..+..........+. ....|..+++|.+|+.+.+.... ..+....++.++
T Consensus 149 F~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~--~~~~~~~~~~l~ 226 (331)
T PF14516_consen 149 FFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG--LEFSQEQLEQLM 226 (331)
T ss_pred HHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh--ccCCHHHHHHHH
Confidence 5655555666432 124777777664322111111111 22478899999999999885432 234444455555
Q ss_pred hccccccCCHHHHHHHHHHhhh
Q 009352 283 RPFCRITKRVDELSTAFSLLFK 304 (537)
Q Consensus 283 ~~~~~~~r~l~~L~~~~~~lw~ 304 (537)
+... +.+..++.+|..++.
T Consensus 227 ~~tg---GhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 227 DWTG---GHPYLVQKACYLLVE 245 (331)
T ss_pred HHHC---CCHHHHHHHHHHHHH
Confidence 4443 345666777766654
No 92
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.6e-07 Score=100.42 Aligned_cols=167 Identities=18% Similarity=0.202 Sum_probs=94.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREAL 162 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l 162 (537)
-++++||||||||.++++++++-+..|+.|...+ +++...|... ..++++|
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEag~NFisVKGPE----------LlNkYVGESE-------------------rAVR~vF 597 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEAGANFISVKGPE----------LLNKYVGESE-------------------RAVRQVF 597 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhccCceEeecCHH----------HHHHHhhhHH-------------------HHHHHHH
Confidence 3999999999999999999999998888887644 3444444311 1244454
Q ss_pred HHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC------CCCChHHHHHhhhh-hcCCCcEEEEEEeCCCc
Q 009352 163 INVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD------KSSSILPFLFGLSD-ILKMPEVGMIFISSTSP 235 (537)
Q Consensus 163 ~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d------~~~~lL~~L~rl~e-~~~~~~l~vI~Is~~~~ 235 (537)
.. .+ ..-|+||++||+|.|.... .+..++..|+.=.+ +-.-.+|-||..+|- |
T Consensus 598 qR----AR---------------~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNR-P 657 (802)
T KOG0733|consen 598 QR----AR---------------ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNR-P 657 (802)
T ss_pred HH----hh---------------cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCC-C
Confidence 32 22 3468999999999998542 11234444433111 111234556665655 4
Q ss_pred ccccc---CCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHH-HHHHhhc--cccccC-CHHHHHHHH
Q 009352 236 DTYHS---NTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSF-LDIVLRP--FCRITK-RVDELSTAF 299 (537)
Q Consensus 236 ~~f~~---r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~-~~~il~~--~~~~~r-~l~~L~~~~ 299 (537)
|-+++ |.|.. ...+|.+..+.+|-.+||...- ....+.+.. ++++... +.++++ |+..|..-+
T Consensus 658 DiIDpAiLRPGRl-Dk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreA 729 (802)
T KOG0733|consen 658 DIIDPAILRPGRL-DKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREA 729 (802)
T ss_pred cccchhhcCCCcc-CceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHH
Confidence 44433 44432 2366667778888888874221 112233332 2444432 235555 666654433
No 93
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=7.1e-08 Score=106.97 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=100.2
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+++.|-+..+..|...+... ..++ +++|||+|+|||++++.+++.+.... ..-.|..|.+-+.+-. +.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~-------g~ 86 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE-------GR 86 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc-------CC
Confidence 35778899999999988652 3445 57999999999999999999876321 1224666643222111 11
Q ss_pred cccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 135 KKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 135 ~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
..+. .+|.+. .. ++.++.+++.+.. . ...++.-|+||||+|.|.. .-..+
T Consensus 87 ~~d~~eid~~s~----~~----v~~ir~l~~~~~~-~--------------p~~~~~KVvIIdev~~Lt~-----~a~na 138 (576)
T PRK14965 87 SVDVFEIDGASN----TG----VDDIRELRENVKY-L--------------PSRSRYKIFIIDEVHMLST-----NAFNA 138 (576)
T ss_pred CCCeeeeeccCc----cC----HHHHHHHHHHHHh-c--------------cccCCceEEEEEChhhCCH-----HHHHH
Confidence 1110 011110 01 2234444433211 0 0123445778899999863 23567
Q ss_pred HHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 213 LFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 213 L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
|++..|-.+ +++.+||+++.+ .++...+.+ ....+.|.+++.+++.+.|.
T Consensus 139 LLk~LEepp-~~~~fIl~t~~~-~kl~~tI~S-Rc~~~~f~~l~~~~i~~~L~ 188 (576)
T PRK14965 139 LLKTLEEPP-PHVKFIFATTEP-HKVPITILS-RCQRFDFRRIPLQKIVDRLR 188 (576)
T ss_pred HHHHHHcCC-CCeEEEEEeCCh-hhhhHHHHH-hhhhhhcCCCCHHHHHHHHH
Confidence 777777643 578899988764 333322211 12589999999999988874
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.72 E-value=2.3e-07 Score=88.14 Aligned_cols=176 Identities=17% Similarity=0.185 Sum_probs=92.5
Q ss_pred HHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhccccccCCCCcc
Q 009352 69 ELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSA 145 (537)
Q Consensus 69 ~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~ 145 (537)
.|...+.. ...+ .+++|||+|+|||++++.+.+.+... .--..|..|.+-+.+- .+..++ ...+...
T Consensus 3 ~l~~~i~~--~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~-------~~~~~d-~~~~~~~ 72 (188)
T TIGR00678 3 QLKRALEK--GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIE-------AGNHPD-LHRLEPE 72 (188)
T ss_pred HHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH-------cCCCCc-EEEeccc
Confidence 44555543 1233 48899999999999999999887421 1111233333211110 011010 0000000
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcE
Q 009352 146 KRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEV 225 (537)
Q Consensus 146 ~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l 225 (537)
..... ++.++.+++.+... ...+...||||||+|++.. +....|+...|..+ ++.
T Consensus 73 ~~~~~----~~~i~~i~~~~~~~---------------~~~~~~kviiide~~~l~~-----~~~~~Ll~~le~~~-~~~ 127 (188)
T TIGR00678 73 GQSIK----VDQVRELVEFLSRT---------------PQESGRRVVIIEDAERMNE-----AAANALLKTLEEPP-PNT 127 (188)
T ss_pred cCcCC----HHHHHHHHHHHccC---------------cccCCeEEEEEechhhhCH-----HHHHHHHHHhcCCC-CCe
Confidence 00001 22333334322110 1123566888999999964 22344555555533 568
Q ss_pred EEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhhcc
Q 009352 226 GMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPF 285 (537)
Q Consensus 226 ~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~~~ 285 (537)
.+||+++.. ..+.....++ ...+.|+|++.+|+.++|... ++.+..+..++...
T Consensus 128 ~~il~~~~~-~~l~~~i~sr-~~~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~~~ 181 (188)
T TIGR00678 128 LFILITPSP-EKLLPTIRSR-CQVLPFPPLSEEALLQWLIRQ----GISEEAAELLLALA 181 (188)
T ss_pred EEEEEECCh-HhChHHHHhh-cEEeeCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHc
Confidence 889988754 4444333222 258999999999999999643 23344444444433
No 95
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.71 E-value=2.1e-07 Score=106.23 Aligned_cols=164 Identities=16% Similarity=0.187 Sum_probs=98.4
Q ss_pred hcCCChHHHHHHHHHHHcccC----CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 58 SRFPGRRVQILELLRLLGTLN----SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~----~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
+.++|-++.-+.+..++.... ..++.++++||||+|||++++.+...++.+++.+++....... .+.+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~--------~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEA--------EIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHH--------Hhcc
Confidence 458998888888887665311 2356789999999999999999999999999888876544432 2223
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
+... ..|. .... +.+.+.. ..... .||+|||+|++... ...+...+|
T Consensus 394 ~~~~-~~g~-------~~G~----~~~~l~~-------------------~~~~~-~villDEidk~~~~-~~g~~~~aL 440 (784)
T PRK10787 394 HRRT-YIGS-------MPGK----LIQKMAK-------------------VGVKN-PLFLLDEIDKMSSD-MRGDPASAL 440 (784)
T ss_pred chhc-cCCC-------CCcH----HHHHHHh-------------------cCCCC-CEEEEEChhhcccc-cCCCHHHHH
Confidence 2111 0010 0001 1112211 01123 37889999999752 223345556
Q ss_pred Hhhhhh--------------cCCCcEEEEEEeCC--CccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 214 FGLSDI--------------LKMPEVGMIFISST--SPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 214 ~rl~e~--------------~~~~~l~vI~Is~~--~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
+.+.+- .+..++.+|..+|. .+..|+.|. ..|.|++|+.+|+.+|..+.
T Consensus 441 levld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~-----~ii~~~~~t~eek~~Ia~~~ 505 (784)
T PRK10787 441 LEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRM-----EVIRLSGYTEDEKLNIAKRH 505 (784)
T ss_pred HHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcce-----eeeecCCCCHHHHHHHHHHh
Confidence 554331 01234444443333 235556665 47899999999999998543
No 96
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.70 E-value=1.5e-07 Score=101.26 Aligned_cols=166 Identities=16% Similarity=0.231 Sum_probs=97.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (537)
..+++|||++|+|||.+++++.+++ +..++|++|. .++..+...+... ...+|.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~---------------~~~~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG---------------KLNEFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc---------------cHHHHH
Confidence 3579999999999999999999875 2467888763 3455555544210 122222
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC-CChHHHHHhhhhhcCCCcEEEEEEeCCC
Q 009352 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS-SSILPFLFGLSDILKMPEVGMIFISSTS 234 (537)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~-~~lL~~L~rl~e~~~~~~l~vI~Is~~~ 234 (537)
..++ ..+-+|+|||++.+...... .+++..|-.+.+. +..+|+.++..
T Consensus 189 ~~~~---------------------------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~----~k~iIitsd~~ 237 (440)
T PRK14088 189 EKYR---------------------------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS----GKQIVICSDRE 237 (440)
T ss_pred HHHH---------------------------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc----CCeEEEECCCC
Confidence 2110 12348899999988642111 2333333333332 34566666655
Q ss_pred cc---ccccCCCCC--CCceeecCCCCHHHHHHHHHhcCCC--hhhhhHHHHHHhhcccc-ccCCHHHHHHHHHHh
Q 009352 235 PD---TYHSNTGYV--APIHVYFPECTEDDLRQIFMRNQAN--QKLYSSFLDIVLRPFCR-ITKRVDELSTAFSLL 302 (537)
Q Consensus 235 ~~---~f~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~~--~~l~~~~~~~il~~~~~-~~r~l~~L~~~~~~l 302 (537)
|. .+..+..++ ....+.|++++.++..+||.+.... ..+- +.+++.+.. ..+++.+|..++..|
T Consensus 238 p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~----~ev~~~Ia~~~~~~~R~L~g~l~~l 309 (440)
T PRK14088 238 PQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP----EEVLNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_pred HHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHhccccCHHHHHHHHHHH
Confidence 43 233333222 2258899999999999999643211 1122 444444444 345788888888887
No 97
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=2.2e-07 Score=103.79 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=98.2
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE---EEeccccCCHHHHHHHHHHHHhh
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV---YTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~---~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
+.+.|-+..+..|...+... ..++ +++|||+|+|||++++.+++.+..... .-.|..|.+ + .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~-------~----~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE-------N----VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH-------h----hc
Confidence 34678889999999988652 3344 679999999999999999998764321 123444432 0 11
Q ss_pred cccccc--CCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHH
Q 009352 134 HKKNAF--NGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (537)
Q Consensus 134 ~~~~~~--~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~ 211 (537)
..+... ++.+. .. ++.++.+++.+... ...++.-|+||||+|.|.. .-+.
T Consensus 85 ~~~Dvieidaasn----~~----vd~IReLie~~~~~---------------P~~g~~KV~IIDEa~~LT~-----~A~N 136 (725)
T PRK07133 85 NSLDIIEMDAASN----NG----VDEIRELIENVKNL---------------PTQSKYKIYIIDEVHMLSK-----SAFN 136 (725)
T ss_pred CCCcEEEEecccc----CC----HHHHHHHHHHHHhc---------------hhcCCCEEEEEEChhhCCH-----HHHH
Confidence 111100 11000 01 22344444432110 1123455888999999863 3456
Q ss_pred HHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 212 FLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 212 ~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+|++..|-.+ +.+.+||+++. ++.+...+.++ ...+.|.+++.+++.++|..
T Consensus 137 ALLKtLEEPP-~~tifILaTte-~~KLl~TI~SR-cq~ieF~~L~~eeI~~~L~~ 188 (725)
T PRK07133 137 ALLKTLEEPP-KHVIFILATTE-VHKIPLTILSR-VQRFNFRRISEDEIVSRLEF 188 (725)
T ss_pred HHHHHhhcCC-CceEEEEEcCC-hhhhhHHHHhh-ceeEEccCCCHHHHHHHHHH
Confidence 7777666543 46778888765 34443222221 15899999999999999853
No 98
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.69 E-value=7.2e-08 Score=92.09 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=94.2
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
...++|-|+-++.|.-+... ...|+++|.|||||||||.+..++++|-.+- |. ..+.....
T Consensus 26 l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG~~--------------~k---e~vLELNA 86 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLGDS--------------YK---EAVLELNA 86 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhChh--------------hh---hHhhhccC
Confidence 34578889999988887755 3578999999999999999999998753110 00 11111111
Q ss_pred cccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhh
Q 009352 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (537)
Q Consensus 137 ~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl 216 (537)
+.+.|+. ..+.-+..+.+. .. ..+.+++-+|||||+|.+.+ +.+ .+|.|.
T Consensus 87 SdeRGID-------------vVRn~IK~FAQ~--kv----------~lp~grhKIiILDEADSMT~--gAQ---QAlRRt 136 (333)
T KOG0991|consen 87 SDERGID-------------VVRNKIKMFAQK--KV----------TLPPGRHKIIILDEADSMTA--GAQ---QALRRT 136 (333)
T ss_pred ccccccH-------------HHHHHHHHHHHh--hc----------cCCCCceeEEEeeccchhhh--HHH---HHHHHH
Confidence 1222321 122233222220 00 12467888999999998864 323 578888
Q ss_pred hhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 217 SDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 217 ~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.|... ....+.+++|... +++-+|. ..+.|...+..|+..=|.
T Consensus 137 MEiyS-~ttRFalaCN~s~KIiEPIQSRC-----AiLRysklsd~qiL~Rl~ 182 (333)
T KOG0991|consen 137 MEIYS-NTTRFALACNQSEKIIEPIQSRC-----AILRYSKLSDQQILKRLL 182 (333)
T ss_pred HHHHc-ccchhhhhhcchhhhhhhHHhhh-----HhhhhcccCHHHHHHHHH
Confidence 88863 3466778877642 4444443 356777778877765553
No 99
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.3e-07 Score=103.41 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=87.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (537)
..+++|||||||||.+++++..+++.+++.+.+.+.. +...+ +....++.+
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~----------sk~vG-------------------esek~ir~~ 327 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL----------SKWVG-------------------ESEKNIREL 327 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh----------ccccc-------------------hHHHHHHHH
Confidence 3599999999999999999999999999988864321 11111 111224444
Q ss_pred HHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCC------ChHHHHHhhhhhc-CCCcEEEEEEeCCC
Q 009352 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS------SILPFLFGLSDIL-KMPEVGMIFISSTS 234 (537)
Q Consensus 162 l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~------~lL~~L~rl~e~~-~~~~l~vI~Is~~~ 234 (537)
+... + ...+.||++||+|.+....... .++..|+...+-. ...++-||..+|.+
T Consensus 328 F~~A----~---------------~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p 388 (494)
T COG0464 328 FEKA----R---------------KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRP 388 (494)
T ss_pred HHHH----H---------------cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCc
Confidence 4332 1 2467899999999998654221 3555555544322 23345555556654
Q ss_pred c--cccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 235 P--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 235 ~--~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
+ +.-+.|.|. ....|+||+++.++-.+|+...
T Consensus 389 ~~ld~a~lR~gR-fd~~i~v~~pd~~~r~~i~~~~ 422 (494)
T COG0464 389 DDLDPALLRPGR-FDRLIYVPLPDLEERLEIFKIH 422 (494)
T ss_pred cccCHhhcccCc-cceEeecCCCCHHHHHHHHHHH
Confidence 3 222233332 3369999999999999999654
No 100
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.68 E-value=4.3e-07 Score=91.85 Aligned_cols=178 Identities=15% Similarity=0.256 Sum_probs=98.0
Q ss_pred CCChHHHHH---HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCC---eEEEeccccCCHHHHHHHHHHHHhh
Q 009352 60 FPGRRVQIL---ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRP---FVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 60 ~~~Re~qi~---~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~---~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.+|-++.+. .|..++.. ...|+++++||||||||++++.+....... ++.+++....+
T Consensus 140 yvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t-------------- 203 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT-------------- 203 (554)
T ss_pred hcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch--------------
Confidence 444444442 34444443 346889999999999999999999876532 44444322221
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
++ ++++++..-.... -.++..||+|||++++-+ ..++++
T Consensus 204 ------------------~d----vR~ife~aq~~~~--------------l~krkTilFiDEiHRFNk--sQQD~f--- 242 (554)
T KOG2028|consen 204 ------------------ND----VRDIFEQAQNEKS--------------LTKRKTILFIDEIHRFNK--SQQDTF--- 242 (554)
T ss_pred ------------------HH----HHHHHHHHHHHHh--------------hhcceeEEEeHHhhhhhh--hhhhcc---
Confidence 11 4444443211110 134678999999999864 224422
Q ss_pred HhhhhhcCCCcEEEEEEeCCCc-cccccCCC-CCCCceeecCCCCHHHHHHHHHhc--------CCChh-------hhhH
Q 009352 214 FGLSDILKMPEVGMIFISSTSP-DTYHSNTG-YVAPIHVYFPECTEDDLRQIFMRN--------QANQK-------LYSS 276 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~-~~f~~r~~-~~~p~~I~FppYt~~el~~IL~~~--------r~~~~-------l~~~ 276 (537)
|+- +.+=.|+||+.+.. ..|.-+.. ......+.+.+.+.+++..||++. |+... +...
T Consensus 243 --LP~---VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~s 317 (554)
T KOG2028|consen 243 --LPH---VENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDS 317 (554)
T ss_pred --cce---eccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHH
Confidence 111 12334555554432 23321111 112357888999999999999762 21111 2233
Q ss_pred HHHHHhhccccccCC-HHHHHHHH
Q 009352 277 FLDIVLRPFCRITKR-VDELSTAF 299 (537)
Q Consensus 277 ~~~~il~~~~~~~r~-l~~L~~~~ 299 (537)
.++-+.+...+.+|. ++.|...+
T Consensus 318 iidyla~lsdGDaR~aLN~Lems~ 341 (554)
T KOG2028|consen 318 IIDYLAYLSDGDARAALNALEMSL 341 (554)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHH
Confidence 444444555566664 66666653
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=7.1e-08 Score=102.51 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=110.4
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe----------EEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF----------VYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~----------~~inc~~~~s~~~l~~~ 126 (537)
+++.|-+..+..|...+... ..++ +++|||+|+|||++++.+.+.+.... ..-.|.+|.+-+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~- 92 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA- 92 (397)
T ss_pred hhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc-
Confidence 35678888888898888752 3455 88999999999999999999886421 1124666654333221
Q ss_pred HHHHHhhccccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 127 ILNQLLLHKKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 127 Il~~L~~~~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
+..++- .+|.. ... ++.++++.+.+... ...++.-|+||||+|.+..
T Consensus 93 ------~~~~n~~~~~~~~----~~~----id~Ir~l~~~~~~~---------------p~~~~~kvvIIdea~~l~~-- 141 (397)
T PRK14955 93 ------GTSLNISEFDAAS----NNS----VDDIRLLRENVRYG---------------PQKGRYRVYIIDEVHMLSI-- 141 (397)
T ss_pred ------CCCCCeEeecccc----cCC----HHHHHHHHHHHhhc---------------hhcCCeEEEEEeChhhCCH--
Confidence 111110 01100 011 22344444332110 0123456888999999964
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHh
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVL 282 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il 282 (537)
.-...|++..|-. .+...+||+++.. ..+.....+ ....+.|++++.+++.+.+.... ....+.+..++.++
T Consensus 142 ---~~~~~LLk~LEep-~~~t~~Il~t~~~-~kl~~tl~s-R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 142 ---AAFNAFLKTLEEP-PPHAIFIFATTEL-HKIPATIAS-RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred ---HHHHHHHHHHhcC-CCCeEEEEEeCCh-HHhHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1233455554543 2467788887652 333321111 11478999999999998885321 11224444555554
Q ss_pred hccccccCCHHHHHHHHHH
Q 009352 283 RPFCRITKRVDELSTAFSL 301 (537)
Q Consensus 283 ~~~~~~~r~l~~L~~~~~~ 301 (537)
....+ ++..+...+.+
T Consensus 216 ~~s~g---~lr~a~~~L~k 231 (397)
T PRK14955 216 RKAQG---SMRDAQSILDQ 231 (397)
T ss_pred HHcCC---CHHHHHHHHHH
Confidence 44433 44444444443
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2.6e-07 Score=97.65 Aligned_cols=175 Identities=14% Similarity=0.137 Sum_probs=102.4
Q ss_pred hhcCCChHHHHHHHHHHHcccCC-------CCC-CeEEECCCCCCHHHHHHHHHHhcCCCe-EEEeccccCCHHHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTLNS-------SMP-PLFVYGSASTGKTSIIIQVFRHLSRPF-VYTSCLSCYSPRILFESI 127 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~-------~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~-~~inc~~~~s~~~l~~~I 127 (537)
.+.+.|-+..+..|...+..... +.+ .++++||+|+|||++++.+.+.+.... .---|.+|.+=+.+..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~-- 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA-- 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc--
Confidence 35678889999999999876421 123 388999999999999999998875321 1124667764333321
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCC
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS 207 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~ 207 (537)
+..|+- .-+ .++...--++.++++++.+... ...++.-|+||||+|++..
T Consensus 82 -----~~hpD~-~~i----~~~~~~i~i~~iR~l~~~~~~~---------------p~~~~~kViiIDead~m~~----- 131 (394)
T PRK07940 82 -----GTHPDV-RVV----APEGLSIGVDEVRELVTIAARR---------------PSTGRWRIVVIEDADRLTE----- 131 (394)
T ss_pred -----CCCCCE-EEe----ccccccCCHHHHHHHHHHHHhC---------------cccCCcEEEEEechhhcCH-----
Confidence 111110 000 0010111133455555432210 1123455888899999964
Q ss_pred ChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 208 SILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 208 ~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.-...|++..|-.+ ++..+|++++. ++.+++.+-++ ...|+|++.+.+++.++|..
T Consensus 132 ~aanaLLk~LEep~-~~~~fIL~a~~-~~~llpTIrSR-c~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 132 RAANALLKAVEEPP-PRTVWLLCAPS-PEDVLPTIRSR-CRHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred HHHHHHHHHhhcCC-CCCeEEEEECC-hHHChHHHHhh-CeEEECCCCCHHHHHHHHHH
Confidence 12245666656532 45667777776 44444322221 25899999999999999963
No 103
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.4e-07 Score=97.69 Aligned_cols=150 Identities=21% Similarity=0.321 Sum_probs=94.5
Q ss_pred HHHHHHHHHHcccCC----C--CC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009352 65 VQILELLRLLGTLNS----S--MP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~----~--~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~ 137 (537)
.|++++..+|..... + .| -|++.||||||||.++++++-+-+++|.|....+ |+..+
T Consensus 314 ~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE-------FdEm~--------- 377 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE-------FDEMF--------- 377 (752)
T ss_pred HHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc-------hhhhh---------
Confidence 567888888876422 1 23 3999999999999999999999999999987655 22222
Q ss_pred ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCCh------HH
Q 009352 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSI------LP 211 (537)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~l------L~ 211 (537)
-|++ ..++++++... ...-|+||+|||+|.+.....+.+. |.
T Consensus 378 --VGvG-----------ArRVRdLF~aA-------------------k~~APcIIFIDEiDavG~kR~~~~~~y~kqTlN 425 (752)
T KOG0734|consen 378 --VGVG-----------ARRVRDLFAAA-------------------KARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLN 425 (752)
T ss_pred --hccc-----------HHHHHHHHHHH-------------------HhcCCeEEEEechhhhcccCCccHHHHHHHHHH
Confidence 1222 12455666532 1346899999999999753332222 22
Q ss_pred HHH-hhhhhcCCCcEEEEEEeCCC-cc---ccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 212 FLF-GLSDILKMPEVGMIFISSTS-PD---TYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 212 ~L~-rl~e~~~~~~l~vI~Is~~~-~~---~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.|+ .+--+ .+|-.||+|+.+. |+ +-+.|.|.+. .+|+.|..+-.=-.+||.
T Consensus 426 QLLvEmDGF--~qNeGiIvigATNfpe~LD~AL~RPGRFD-~~v~Vp~PDv~GR~eIL~ 481 (752)
T KOG0734|consen 426 QLLVEMDGF--KQNEGIIVIGATNFPEALDKALTRPGRFD-RHVTVPLPDVRGRTEILK 481 (752)
T ss_pred HHHHHhcCc--CcCCceEEEeccCChhhhhHHhcCCCccc-eeEecCCCCcccHHHHHH
Confidence 222 22222 3466677665442 44 4455666443 588888887776777774
No 104
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.64 E-value=2.8e-07 Score=90.68 Aligned_cols=148 Identities=19% Similarity=0.259 Sum_probs=90.7
Q ss_pred hcCCChHHHHHHHHHHHcccCC---CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNS---SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~---~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
++|.|-++..++|.-++...-. ...++++|||||.||||++.-+.+++++.+-+.+...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~------------------ 87 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPA------------------ 87 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccc------------------
Confidence 4688988888888888865422 3357999999999999999999999995433322111
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
-++..|+.. ++.. |+ ..=|+++||+++|.. .-.++||.-+
T Consensus 88 -------------leK~gDlaa----iLt~----Le-----------------~~DVLFIDEIHrl~~--~vEE~LYpaM 127 (332)
T COG2255 88 -------------LEKPGDLAA----ILTN----LE-----------------EGDVLFIDEIHRLSP--AVEEVLYPAM 127 (332)
T ss_pred -------------ccChhhHHH----HHhc----CC-----------------cCCeEEEehhhhcCh--hHHHHhhhhh
Confidence 112233222 3321 21 224889999999975 3345555433
Q ss_pred hhhhh--------------cCCCcEEEEEEeCCC---ccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 215 GLSDI--------------LKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 215 rl~e~--------------~~~~~l~vI~Is~~~---~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
.=..+ .++|..++|..++-. ..++..|.|. ..++.=|+.+|+.+|+.+.
T Consensus 128 EDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi----~~rlefY~~~eL~~Iv~r~ 193 (332)
T COG2255 128 EDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGI----IQRLEFYTVEELEEIVKRS 193 (332)
T ss_pred hheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCC----eeeeecCCHHHHHHHHHHH
Confidence 21111 013446666655432 2444555552 4445559999999999654
No 105
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.63 E-value=3e-06 Score=87.29 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHcccC-CCCCCeEEECCCCCCHHHHHHHHHHhcCCC------eEEEeccccCCH----HHHHHHHHHHH
Q 009352 63 RRVQILELLRLLGTLN-SSMPPLFVYGSASTGKTSIIIQVFRHLSRP------FVYTSCLSCYSP----RILFESILNQL 131 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~-~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~------~~~inc~~~~s~----~~l~~~Il~~L 131 (537)
|+.....|++++.... ..+-.|.|+|+=|+|||++++.+.+++... +++.|+..+... ..++..|.+++
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 5667788999887643 223358899999999999999999888654 677788877663 45566666666
Q ss_pred hhc
Q 009352 132 LLH 134 (537)
Q Consensus 132 ~~~ 134 (537)
...
T Consensus 81 ~~~ 83 (325)
T PF07693_consen 81 EKH 83 (325)
T ss_pred HHh
Confidence 543
No 106
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=2.8e-07 Score=102.68 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=100.3
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCe----EEEeccccCCHHHHHHHHHHHHhh
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPF----VYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~----~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
+.+.|.+.....|...+... .-.+.+++|||+|+|||++++.+++.+.... ..-.|..|.. |..+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~--------C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL--------CRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH--------HHHHhc
Confidence 45778899999999988752 1124689999999999999999999986421 1124555532 222211
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
......-.+. .... .-++.++++++..... ...++.-|+||||+|.|.. .-..+|
T Consensus 87 g~h~D~~ei~-~~~~----~~vd~IReii~~a~~~---------------p~~~~~KViIIDEad~Lt~-----~a~naL 141 (620)
T PRK14948 87 GNALDVIEID-AASN----TGVDNIRELIERAQFA---------------PVQARWKVYVIDECHMLST-----AAFNAL 141 (620)
T ss_pred CCCccEEEEe-cccc----CCHHHHHHHHHHHhhC---------------hhcCCceEEEEECccccCH-----HHHHHH
Confidence 1000000000 0000 1133455555432110 0123456888999999953 345677
Q ss_pred HhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
++..|-.+ .++.+|+++++ +++++..+.+ ....+.|++.+.+++.+.|.
T Consensus 142 LK~LEePp-~~tvfIL~t~~-~~~llpTIrS-Rc~~~~f~~l~~~ei~~~L~ 190 (620)
T PRK14948 142 LKTLEEPP-PRVVFVLATTD-PQRVLPTIIS-RCQRFDFRRIPLEAMVQHLS 190 (620)
T ss_pred HHHHhcCC-cCeEEEEEeCC-hhhhhHHHHh-heeEEEecCCCHHHHHHHHH
Confidence 77767532 45778888876 3344322211 12589999999999988775
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.63 E-value=3.7e-07 Score=105.90 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=91.5
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~----------~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.||+++++++...|... ..++++++||||||||++++.++..+. .+++.++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------------- 237 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------------- 237 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH-------------
Confidence 35899999999999988652 346789999999999999999998763 12222221
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc---C
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW---D 204 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~---d 204 (537)
..+.. |. . ...+|...++.++..+.. .+.++||+|||++.|..- +
T Consensus 238 -~~l~a-------~~--~----~~g~~e~~l~~~l~~~~~------------------~~~~~ILfIDEih~l~~~g~~~ 285 (852)
T TIGR03346 238 -GALIA-------GA--K----YRGEFEERLKAVLNEVTK------------------SEGQIILFIDELHTLVGAGKAE 285 (852)
T ss_pred -HHHhh-------cc--h----hhhhHHHHHHHHHHHHHh------------------cCCCeEEEeccHHHhhcCCCCc
Confidence 11110 00 0 112444556556554311 235789999999999731 1
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCCc-ccc---ccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSP-DTY---HSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~-~~f---~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+..+... +++ ..+. .-.+.+|..++..+ ..+ .+....+. ..|.+++.+.++..+||..
T Consensus 286 ~~~d~~~-~Lk-~~l~-~g~i~~IgaTt~~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~ 347 (852)
T TIGR03346 286 GAMDAGN-MLK-PALA-RGELHCIGATTLDEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRG 347 (852)
T ss_pred chhHHHH-Hhc-hhhh-cCceEEEEeCcHHHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHH
Confidence 1112221 211 1111 12466666665432 111 11111111 3688888899999999954
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.62 E-value=1.4e-07 Score=107.15 Aligned_cols=166 Identities=13% Similarity=0.210 Sum_probs=101.7
Q ss_pred hhcCCChHHHHHHHHHHHcccC-------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTLN-------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILN 129 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~-------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~ 129 (537)
...+.|-++.++.|...+.... .+..+++++||+|||||.+++.+.+.++.+++.+||.++..... +.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~-----~~ 531 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT-----VS 531 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhccccc-----HH
Confidence 3567888999999998876421 12335899999999999999999999999999999987654321 23
Q ss_pred HHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCCh
Q 009352 130 QLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSI 209 (537)
Q Consensus 130 ~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~l 209 (537)
.+.+..+ ...|+.. . ..+...+. .....||+|||+|++. +++
T Consensus 532 ~LiG~~~-gyvg~~~-------~-------g~L~~~v~------------------~~p~sVlllDEieka~-----~~v 573 (758)
T PRK11034 532 RLIGAPP-GYVGFDQ-------G-------GLLTDAVI------------------KHPHAVLLLDEIEKAH-----PDV 573 (758)
T ss_pred HHcCCCC-Ccccccc-------c-------chHHHHHH------------------hCCCcEEEeccHhhhh-----HHH
Confidence 4444321 1112110 0 02221111 1234689999999884 356
Q ss_pred HHHHHhhhhh---cC-------CCcEEEEEEeCCCccc------------------------cccCCCCCCCceeecCCC
Q 009352 210 LPFLFGLSDI---LK-------MPEVGMIFISSTSPDT------------------------YHSNTGYVAPIHVYFPEC 255 (537)
Q Consensus 210 L~~L~rl~e~---~~-------~~~l~vI~Is~~~~~~------------------------f~~r~~~~~p~~I~FppY 255 (537)
...|+.+.+- .+ ..|+.+|+.||...+. |.+-.-.+.+..|.|+|+
T Consensus 574 ~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L 653 (758)
T PRK11034 574 FNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL 653 (758)
T ss_pred HHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCC
Confidence 6666655431 11 2345567777632110 111111234468899999
Q ss_pred CHHHHHHHHH
Q 009352 256 TEDDLRQIFM 265 (537)
Q Consensus 256 t~~el~~IL~ 265 (537)
+++++.+|+.
T Consensus 654 ~~~~l~~I~~ 663 (758)
T PRK11034 654 STDVIHQVVD 663 (758)
T ss_pred CHHHHHHHHH
Confidence 9999999984
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=6.8e-07 Score=94.06 Aligned_cols=195 Identities=14% Similarity=0.095 Sum_probs=103.5
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~ 137 (537)
+++.|.+..+..|...+... ...+++++|||+|+|||++++.+.+.+........|..+. ..++ .+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~--~~~~-----~l------ 82 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS--FNIF-----EL------ 82 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC--cceE-----Ee------
Confidence 34678899999999998652 1223588999999999999999998865311100110000 0000 00
Q ss_pred ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhh
Q 009352 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLS 217 (537)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~ 217 (537)
++.. .... ..++.+++.+.. ....++.-||||||+|.+.. ..+..|++..
T Consensus 83 --~~~~----~~~~----~~i~~l~~~~~~---------------~p~~~~~kiviIDE~~~l~~-----~~~~~ll~~l 132 (367)
T PRK14970 83 --DAAS----NNSV----DDIRNLIDQVRI---------------PPQTGKYKIYIIDEVHMLSS-----AAFNAFLKTL 132 (367)
T ss_pred --cccc----CCCH----HHHHHHHHHHhh---------------ccccCCcEEEEEeChhhcCH-----HHHHHHHHHH
Confidence 0000 0011 123333332110 00123445788999998853 2344555543
Q ss_pred hhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccCCHHHH
Q 009352 218 DILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITKRVDEL 295 (537)
Q Consensus 218 e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r~l~~L 295 (537)
|-. .++..+|++++. +.++.....++ ...+.|++++.+|+..+|.... ....+.++.++.++.... +|+..+
T Consensus 133 e~~-~~~~~~Il~~~~-~~kl~~~l~sr-~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~---gdlr~~ 206 (367)
T PRK14970 133 EEP-PAHAIFILATTE-KHKIIPTILSR-CQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD---GALRDA 206 (367)
T ss_pred hCC-CCceEEEEEeCC-cccCCHHHHhc-ceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC---CCHHHH
Confidence 432 234666666654 33443222221 1478999999999999985321 122244555565555443 355555
Q ss_pred HHHHHHh
Q 009352 296 STAFSLL 302 (537)
Q Consensus 296 ~~~~~~l 302 (537)
...+.++
T Consensus 207 ~~~lekl 213 (367)
T PRK14970 207 LSIFDRV 213 (367)
T ss_pred HHHHHHH
Confidence 4444444
No 110
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.62 E-value=3.2e-07 Score=104.79 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=50.9
Q ss_pred HHhhcCCChHHHHHHHHHHHcccC----C---CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLN----S---SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~----~---~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s 119 (537)
.+.+++.|-+..++.|...+.... . +..+++++||+|||||.+++.+.+.++.+++.++|.++..
T Consensus 451 ~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 451 NLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred HHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 344677888899998888876421 1 2224789999999999999999999998999999876543
No 111
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.8e-07 Score=100.73 Aligned_cols=193 Identities=16% Similarity=0.170 Sum_probs=116.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
+++|=|.....|...+... ...+ -+++||-||||||+.+-+++.|+.. ...--|.+|.+-+.+-..-.-.+...
T Consensus 17 evvGQe~v~~~L~nal~~~--ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi- 93 (515)
T COG2812 17 DVVGQEHVVKTLSNALENG--RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI- 93 (515)
T ss_pred HhcccHHHHHHHHHHHHhC--cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhh-
Confidence 3478889999999988662 2333 6789999999999999999998753 22224666654222111100000000
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
++.+. . -++..+.+.+++.. .+ ..++.-|.||||++.|.. ..+.+|++
T Consensus 94 ----DaASn-~-------gVddiR~i~e~v~y-------~P--------~~~ryKVyiIDEvHMLS~-----~afNALLK 141 (515)
T COG2812 94 ----DAASN-T-------GVDDIREIIEKVNY-------AP--------SEGRYKVYIIDEVHMLSK-----QAFNALLK 141 (515)
T ss_pred ----hhhhc-c-------ChHHHHHHHHHhcc-------CC--------ccccceEEEEecHHhhhH-----HHHHHHhc
Confidence 01010 1 12335555554321 11 234555778899999963 56788888
Q ss_pred hhhhcCCCcEEEEEEeCCC---ccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccC
Q 009352 216 LSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 216 l~e~~~~~~l~vI~Is~~~---~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r 290 (537)
.-|--+ +++.+||.++++ |...++|. .++.|...+.+++..-|..-- ..-...+..+..+.....+.-|
T Consensus 142 TLEEPP-~hV~FIlATTe~~Kip~TIlSRc-----q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 142 TLEEPP-SHVKFILATTEPQKIPNTILSRC-----QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred ccccCc-cCeEEEEecCCcCcCchhhhhcc-----ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChh
Confidence 777654 678889988874 46666665 589999999999988874321 1122333444444444444455
Q ss_pred CH
Q 009352 291 RV 292 (537)
Q Consensus 291 ~l 292 (537)
|.
T Consensus 216 Da 217 (515)
T COG2812 216 DA 217 (515)
T ss_pred hH
Confidence 53
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.62 E-value=2.5e-07 Score=107.07 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=40.1
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+.+.||+++++++...|... ..++++++||||||||++++.++..+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999988662 34679999999999999999999886
No 113
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.7e-07 Score=89.44 Aligned_cols=161 Identities=20% Similarity=0.262 Sum_probs=96.2
Q ss_pred hhcCCChHHHHHHHHHHHcccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~ 125 (537)
.+.+-|-++||++|...+--.. .+...+++|||||||||.+++++..+.+..|..+.. |.
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg-----PQ---- 240 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAG-----PQ---- 240 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcc-----hH----
Confidence 3567899999999998764321 122349999999999999999999876543332221 11
Q ss_pred HHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc--
Q 009352 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-- 203 (537)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~-- 203 (537)
+++-..+. |. ...++.+. -.+ ...+.+|+|||+|.+...
T Consensus 241 -LVQMfIGd------GA-------------kLVRDAFa----LAK---------------EkaP~IIFIDElDAIGtKRf 281 (424)
T KOG0652|consen 241 -LVQMFIGD------GA-------------KLVRDAFA----LAK---------------EKAPTIIFIDELDAIGTKRF 281 (424)
T ss_pred -HHhhhhcc------hH-------------HHHHHHHH----Hhh---------------ccCCeEEEEechhhhccccc
Confidence 12222221 10 11223332 111 346789999999999642
Q ss_pred C--CC------CChHHHHHhhhhhcCCCcEEEEEEeCCC--ccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 204 D--KS------SSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 204 d--~~------~~lL~~L~rl~e~~~~~~l~vI~Is~~~--~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
| .. ..+|..|-.|--+.....+.||..+|-. .++-+-|.|. ....|.||-.+.+--.+||+-
T Consensus 282 DSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGR-LDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 282 DSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGR-LDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred cccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhccc-ccccccCCCCChHHHHHHHHH
Confidence 1 10 1233333333333333458888888763 2444445553 335899999999888888853
No 114
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.5e-07 Score=104.66 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=96.4
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE---EEeccccCCHHHHHHHHHHHHhhc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV---YTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~---~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
++.|-+..+..|...+... ..++ +++|||+|+|||++++.+++.+..... .-.|..|..-+. |....
T Consensus 17 eiiGq~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~----i~~~~--- 87 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA----IAEGS--- 87 (585)
T ss_pred HhcCCHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH----HhcCC---
Confidence 4678888889898887652 2334 689999999999999999998863211 123555543222 21111
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
.++ ...+. ...... ++.++++.+.+... ...+..-||||||+|.|.. +-+..|+
T Consensus 88 ~~d-~~~i~-~~~~~~----vd~ir~ii~~~~~~---------------p~~~~~kVvIIDEa~~L~~-----~a~naLL 141 (585)
T PRK14950 88 AVD-VIEMD-AASHTS----VDDAREIIERVQFR---------------PALARYKVYIIDEVHMLST-----AAFNALL 141 (585)
T ss_pred CCe-EEEEe-ccccCC----HHHHHHHHHHHhhC---------------cccCCeEEEEEeChHhCCH-----HHHHHHH
Confidence 010 00000 000111 12233333322110 0123456888999998853 3355666
Q ss_pred hhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 215 GLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 215 rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+..|..+ ++..+|++++.. +.++..+.++ ...+.|++++.+++.++|..
T Consensus 142 k~LEepp-~~tv~Il~t~~~-~kll~tI~SR-~~~i~f~~l~~~el~~~L~~ 190 (585)
T PRK14950 142 KTLEEPP-PHAIFILATTEV-HKVPATILSR-CQRFDFHRHSVADMAAHLRK 190 (585)
T ss_pred HHHhcCC-CCeEEEEEeCCh-hhhhHHHHhc-cceeeCCCCCHHHHHHHHHH
Confidence 6666543 467777777653 3333222111 25889999999999998853
No 115
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=3.9e-07 Score=98.94 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=101.2
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhh-c
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLL-H 134 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~-~ 134 (537)
.+.|-+..+..|...+... ..++ +++|||+|+|||++++.+++.+.... ..-.|..|.+-. .+.+ .
T Consensus 17 diiGq~~i~~~L~~~i~~~--~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~--------~i~~g~ 86 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQ--RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV--------EIDKGS 86 (486)
T ss_pred HccChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH--------HHhcCC
Confidence 4678889999999988662 2345 56899999999999999999875210 001344443211 1111 0
Q ss_pred cccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 135 KKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 135 ~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
.++- .++.+. .. ++.++.+.+.+ ... ...++.-|+||||+|.|.. +-+.+
T Consensus 87 ~~d~~eidaas~----~g----vd~ir~I~~~~-~~~--------------P~~~~~KVvIIDEad~Lt~-----~a~na 138 (486)
T PRK14953 87 FPDLIEIDAASN----RG----IDDIRALRDAV-SYT--------------PIKGKYKVYIIDEAHMLTK-----EAFNA 138 (486)
T ss_pred CCcEEEEeCccC----CC----HHHHHHHHHHH-HhC--------------cccCCeeEEEEEChhhcCH-----HHHHH
Confidence 0000 000000 01 12233333221 110 1134556888999998853 23456
Q ss_pred HHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccc
Q 009352 213 LFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFC 286 (537)
Q Consensus 213 L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~ 286 (537)
|++..|..+ +++.+|++++. ++.+.....++ ...+.|++++.+|+.++|.... ....+-+..++.+.....
T Consensus 139 LLk~LEepp-~~~v~Il~tt~-~~kl~~tI~SR-c~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~ 211 (486)
T PRK14953 139 LLKTLEEPP-PRTIFILCTTE-YDKIPPTILSR-CQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE 211 (486)
T ss_pred HHHHHhcCC-CCeEEEEEECC-HHHHHHHHHHh-ceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 666656532 46777777754 33332211111 1589999999999999985321 112233444555444433
No 116
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4e-07 Score=99.66 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHHcccC----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHH
Q 009352 60 FPGRRVQILELLRLLGTLN----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILN 129 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~ 129 (537)
+-|=|+.-.+|..-++-.. .+..-|++|||||||||.++++|+-+....|.-|-..| ++|
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE----------LLN 743 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE----------LLN 743 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH----------HHH
Confidence 4555555555555554421 22345999999999999999999999988887776544 445
Q ss_pred HHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccc
Q 009352 130 QLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (537)
Q Consensus 130 ~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~ 202 (537)
...|.. . ..+|+++++. + ...|+||++||+|.|..
T Consensus 744 MYVGqS--------E-----------~NVR~VFerA----R---------------~A~PCVIFFDELDSlAP 778 (953)
T KOG0736|consen 744 MYVGQS--------E-----------ENVREVFERA----R---------------SAAPCVIFFDELDSLAP 778 (953)
T ss_pred HHhcch--------H-----------HHHHHHHHHh----h---------------ccCCeEEEeccccccCc
Confidence 554431 1 1255566542 2 34689999999999974
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.59 E-value=8.2e-07 Score=86.94 Aligned_cols=168 Identities=13% Similarity=0.173 Sum_probs=91.8
Q ss_pred ChHH-HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009352 62 GRRV-QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (537)
Q Consensus 62 ~Re~-qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~ 137 (537)
++.. .+..+..+... .....+++|+|++|||||++++++.+++ +..++|++|.+... .+ .
T Consensus 23 ~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~----------~~-~---- 86 (227)
T PRK08903 23 GENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL----------AF-D---- 86 (227)
T ss_pred CCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH----------HH-h----
Confidence 4433 34555554432 2235679999999999999999999875 35777887743110 00 0
Q ss_pred ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhh
Q 009352 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLS 217 (537)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~ 217 (537)
.. . ..-+|||||+|.+... .+. .|+.+.
T Consensus 87 -----------------------~~-----------------------~-~~~~liiDdi~~l~~~--~~~---~L~~~~ 114 (227)
T PRK08903 87 -----------------------FD-----------------------P-EAELYAVDDVERLDDA--QQI---ALFNLF 114 (227)
T ss_pred -----------------------hc-----------------------c-cCCEEEEeChhhcCch--HHH---HHHHHH
Confidence 00 0 1236788999988531 122 333332
Q ss_pred hhcC-CCcEEEEEEeCCCcc--ccc----cCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccc
Q 009352 218 DILK-MPEVGMIFISSTSPD--TYH----SNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRI 288 (537)
Q Consensus 218 e~~~-~~~l~vI~Is~~~~~--~f~----~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~ 288 (537)
+... .....+|+.++..+. .+. +|.. ....|.+||++.++...+|.... ....+-+..++.++. ..
T Consensus 115 ~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~--~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~---~~ 189 (227)
T PRK08903 115 NRVRAHGQGALLVAGPAAPLALPLREDLRTRLG--WGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLT---HF 189 (227)
T ss_pred HHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh--cCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---hc
Confidence 2211 112234444443331 121 1221 12589999999999988885421 122334444444444 24
Q ss_pred cCCHHHHHHHHHHh
Q 009352 289 TKRVDELSTAFSLL 302 (537)
Q Consensus 289 ~r~l~~L~~~~~~l 302 (537)
.+++.+|..+...+
T Consensus 190 ~gn~~~l~~~l~~l 203 (227)
T PRK08903 190 RRDMPSLMALLDAL 203 (227)
T ss_pred cCCHHHHHHHHHHH
Confidence 45677777777665
No 118
>PF05729 NACHT: NACHT domain
Probab=98.58 E-value=6.8e-07 Score=82.12 Aligned_cols=143 Identities=20% Similarity=0.318 Sum_probs=80.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC--------C-eEEEeccccCCHH---HHHHHHHHHHhhccccccCCCCccccCCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR--------P-FVYTSCLSCYSPR---ILFESILNQLLLHKKNAFNGYSSAKRCEK 150 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~--------~-~~~inc~~~~s~~---~l~~~Il~~L~~~~~~~~~g~~~~~r~~~ 150 (537)
.++|+|++|+|||++++.++..+.. . ++++++.+..... .+.+.|..++...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---------------- 65 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES---------------- 65 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----------------
Confidence 4789999999999999999987641 1 2344554433322 3333333333111
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC---CChHHHHHhhhhhcCCCcEEE
Q 009352 151 PSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS---SSILPFLFGLSDILKMPEVGM 227 (537)
Q Consensus 151 ~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~---~~lL~~L~rl~e~~~~~~l~v 227 (537)
... ....+..+.. ....++||||.+|.+.+.+.. ..+...|..+......+++++
T Consensus 66 ~~~----~~~~~~~~~~------------------~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 123 (166)
T PF05729_consen 66 IAP----IEELLQELLE------------------KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKL 123 (166)
T ss_pred hhh----hHHHHHHHHH------------------cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeE
Confidence 000 0011111111 346789999999999863211 123333333333311367888
Q ss_pred EEEeCCCc-cccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 228 IFISSTSP-DTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 228 I~Is~~~~-~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
|++++... ..+..... ....+..++++++|+.+++.
T Consensus 124 iit~r~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 124 IITSRPRAFPDLRRRLK--QAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred EEEEcCChHHHHHHhcC--CCcEEEECCCCHHHHHHHHH
Confidence 88877542 22222221 12578889999999999995
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.58 E-value=3.8e-07 Score=103.60 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=94.9
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.+.||+++++++...|... ..++++++||||||||++++.+.... +.+..+.+|.-.... ..++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~-------~~~lla- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD-------IGSLLA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc-------HHHHhc-
Confidence 35899999999999988762 34678999999999999999998764 345555555432110 111110
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC---C-CChH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK---S-SSIL 210 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~---~-~~lL 210 (537)
|.. ...+|...++.+++.+. ...+.+|+|||+|.|..... + .++.
T Consensus 256 ------G~~------~~Ge~e~rl~~l~~~l~-------------------~~~~~ILfIDEIh~L~g~g~~~~g~~d~~ 304 (758)
T PRK11034 256 ------GTK------YRGDFEKRFKALLKQLE-------------------QDTNSILFIDEIHTIIGAGAASGGQVDAA 304 (758)
T ss_pred ------ccc------hhhhHHHHHHHHHHHHH-------------------hcCCCEEEeccHHHHhccCCCCCcHHHHH
Confidence 000 11244445555554321 12356999999999964211 1 1222
Q ss_pred HHHHhhhhhcCCCcEEEEEEeCCCc-ccc---ccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 211 PFLFGLSDILKMPEVGMIFISSTSP-DTY---HSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 211 ~~L~rl~e~~~~~~l~vI~Is~~~~-~~f---~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
..|.. ++...++.+|..++... .++ .+....+- ..|.+++++.+|..+||..
T Consensus 305 nlLkp---~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~ 360 (758)
T PRK11034 305 NLIKP---LLSSGKIRVIGSTTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIING 360 (758)
T ss_pred HHHHH---HHhCCCeEEEecCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHH
Confidence 22221 21123466666555421 111 11111111 4799999999999999964
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=4.3e-07 Score=100.86 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=99.0
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE----------EEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV----------YTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~----------~inc~~~~s~~~l~~~ 126 (537)
+++.|-+..+..|.+.+.. ...++ ++++||+|+|||++++.+.+.+....- .-.|..|.+=+.+-.
T Consensus 16 ~eivGQe~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~- 92 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA- 92 (620)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc-
Confidence 3467888888999998865 23445 889999999999999999999864210 125666654332211
Q ss_pred HHHHHhhccccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 127 ILNQLLLHKKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 127 Il~~L~~~~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
+..++- .+|. .... ++.++.+.+.+... .-.++.-|+||||+|.+..
T Consensus 93 ------g~~~n~~~~d~~----s~~~----vd~Ir~l~e~~~~~---------------P~~~~~KVvIIdEad~Lt~-- 141 (620)
T PRK14954 93 ------GTSLNISEFDAA----SNNS----VDDIRQLRENVRYG---------------PQKGRYRVYIIDEVHMLST-- 141 (620)
T ss_pred ------cCCCCeEEeccc----ccCC----HHHHHHHHHHHHhh---------------hhcCCCEEEEEeChhhcCH--
Confidence 111110 0110 0111 23344444433110 0122345778899999953
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.-...|++..|-.+ +..++||+++.. .+++..+.+ ....|.|.+++.+|+...|..
T Consensus 142 ---~a~naLLK~LEePp-~~tv~IL~t~~~-~kLl~TI~S-Rc~~vef~~l~~~ei~~~L~~ 197 (620)
T PRK14954 142 ---AAFNAFLKTLEEPP-PHAIFIFATTEL-HKIPATIAS-RCQRFNFKRIPLDEIQSQLQM 197 (620)
T ss_pred ---HHHHHHHHHHhCCC-CCeEEEEEeCCh-hhhhHHHHh-hceEEecCCCCHHHHHHHHHH
Confidence 22456666656543 467888888653 344322111 125899999999999888753
No 121
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=2.6e-07 Score=101.87 Aligned_cols=193 Identities=14% Similarity=0.128 Sum_probs=109.2
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
.+.|=+..+..|...+... ..++ +++|||+|+|||++++.+++.+... ....-|.+|.+-+.+-. +..
T Consensus 17 diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~-------~~~ 87 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN-------DNS 87 (563)
T ss_pred HccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc-------CCC
Confidence 4667788889999988652 2344 7899999999999999999988632 11124666665432211 100
Q ss_pred cc--ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 136 KN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 136 ~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
.+ ..+|.+ ...+ +.++++.+.+... ...++.-|+||||+|.|.. ..+.+|
T Consensus 88 ~dv~~idgas----~~~v----ddIr~l~e~~~~~---------------p~~~~~KVvIIDEa~~Ls~-----~a~naL 139 (563)
T PRK06647 88 LDVIEIDGAS----NTSV----QDVRQIKEEIMFP---------------PASSRYRVYIIDEVHMLSN-----SAFNAL 139 (563)
T ss_pred CCeEEecCcc----cCCH----HHHHHHHHHHHhc---------------hhcCCCEEEEEEChhhcCH-----HHHHHH
Confidence 10 001110 0112 2233344332110 1123455788999999853 345677
Q ss_pred HhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccCC
Q 009352 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITKR 291 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r~ 291 (537)
++..|-.+ +++.+||+++.. ..+...+.++ ...+.|.+++.+++.++|.... ....+.+..+..++....+..|+
T Consensus 140 LK~LEepp-~~~vfI~~tte~-~kL~~tI~SR-c~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 140 LKTIEEPP-PYIVFIFATTEV-HKLPATIKSR-CQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred HHhhccCC-CCEEEEEecCCh-HHhHHHHHHh-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 77766543 568888877653 3333211111 2479999999999999985321 11223345555555544443343
No 122
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.3e-06 Score=94.26 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=108.8
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEE---EeccccCCHHHHHHHHHHHHh-
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVY---TSCLSCYSPRILFESILNQLL- 132 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~~---inc~~~~s~~~l~~~Il~~L~- 132 (537)
+.+.|.+..+..|...+... ..++ +++|||+|+|||++++.+++.+...-.. --|..|.+-+ .+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~--------~i~~ 86 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK--------EISS 86 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH--------HHhc
Confidence 34678899999999988652 2344 7899999999999999999987532100 1233333211 111
Q ss_pred hccccc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChH
Q 009352 133 LHKKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSIL 210 (537)
Q Consensus 133 ~~~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL 210 (537)
+...+. .+|.+. ..+ +.++.+.+.+... ...+..-||||||+|.+.. +..
T Consensus 87 ~~~~d~~~i~g~~~----~gi----d~ir~i~~~l~~~---------------~~~~~~kvvIIdead~lt~-----~~~ 138 (451)
T PRK06305 87 GTSLDVLEIDGASH----RGI----EDIRQINETVLFT---------------PSKSRYKIYIIDEVHMLTK-----EAF 138 (451)
T ss_pred CCCCceEEeecccc----CCH----HHHHHHHHHHHhh---------------hhcCCCEEEEEecHHhhCH-----HHH
Confidence 110000 011100 011 1233332221100 0123456788999999853 345
Q ss_pred HHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccc
Q 009352 211 PFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRI 288 (537)
Q Consensus 211 ~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~ 288 (537)
..|++..|-.+ +++++||+++.. .++...+.+ ....+.|++++.+|+.++|.... ....+.+..+..++....+
T Consensus 139 n~LLk~lEep~-~~~~~Il~t~~~-~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 139 NSLLKTLEEPP-QHVKFFLATTEI-HKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHHHhhcCC-CCceEEEEeCCh-HhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 67777766643 468888888653 333322211 12589999999999999885321 1112334444444444433
Q ss_pred cCCHHHHHHHHHHh
Q 009352 289 TKRVDELSTAFSLL 302 (537)
Q Consensus 289 ~r~l~~L~~~~~~l 302 (537)
|+..+...+..+
T Consensus 215 --dlr~a~~~Lekl 226 (451)
T PRK06305 215 --SLRDAESLYDYV 226 (451)
T ss_pred --CHHHHHHHHHHH
Confidence 444444444444
No 123
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.9e-08 Score=96.23 Aligned_cols=136 Identities=18% Similarity=0.326 Sum_probs=76.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC---------CeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR---------PFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSD 153 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~---------~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~ 153 (537)
-|++|||||||||+++++++++|.+ ..+.|||.. || ....++ +
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs------LF----SKWFsE-----S------------- 230 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS------LF----SKWFSE-----S------------- 230 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH------HH----HHHHhh-----h-------------
Confidence 3789999999999999999999873 223345522 22 222111 1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc-------CCCCC---hHHHHHh-hhhhcCC
Q 009352 154 FVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-------DKSSS---ILPFLFG-LSDILKM 222 (537)
Q Consensus 154 f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~-------d~~~~---lL~~L~r-l~e~~~~ 222 (537)
.....++++++-+-+. ..+..+++.|||++.|.-- ..+.+ ++.+|+. +-.+-..
T Consensus 231 -gKlV~kmF~kI~ELv~--------------d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~ 295 (423)
T KOG0744|consen 231 -GKLVAKMFQKIQELVE--------------DRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY 295 (423)
T ss_pred -hhHHHHHHHHHHHHHh--------------CCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC
Confidence 1112233333322221 2456788889999998521 11222 2333332 2222224
Q ss_pred CcEEEEEEeCCC---ccccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 223 PEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 223 ~~l~vI~Is~~~---~~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
||+-+...||.. -..|..|.. ...+.-|.+..-+.+|+.
T Consensus 296 ~NvliL~TSNl~~siD~AfVDRAD----i~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 296 PNVLILATSNLTDSIDVAFVDRAD----IVFYVGPPTAEAIYEILK 337 (423)
T ss_pred CCEEEEeccchHHHHHHHhhhHhh----heeecCCccHHHHHHHHH
Confidence 666555555542 134444442 567778889999999984
No 124
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.56 E-value=6.2e-07 Score=96.36 Aligned_cols=166 Identities=16% Similarity=0.288 Sum_probs=94.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (537)
..+++||||+|+|||++++++.+++ +.+++|+++. .+...+...+... ....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~------~f~~~~~~~l~~~---------------~~~~---- 195 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE------LFTEHLVSAIRSG---------------EMQR---- 195 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH------HHHHHHHHHHhcc---------------hHHH----
Confidence 3579999999999999999999876 3577887753 2333333333110 0111
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH-hhhhhcCCCcEEEEEEeCCCcc
Q 009352 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF-GLSDILKMPEVGMIFISSTSPD 236 (537)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~-rl~e~~~~~~l~vI~Is~~~~~ 236 (537)
++..+ ...-+|+|||++.+...+..++.+..++ .+.+ .+..+|+.++..|.
T Consensus 196 f~~~~------------------------~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~----~~k~IIlts~~~p~ 247 (445)
T PRK12422 196 FRQFY------------------------RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT----EGKLIVISSTCAPQ 247 (445)
T ss_pred HHHHc------------------------ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH----CCCcEEEecCCCHH
Confidence 11111 1234888999999864222222222222 2222 24567777777653
Q ss_pred c---cccCCCCC--CCceeecCCCCHHHHHHHHHhcCCC--hhhhhHHHHHHhhccccccCCHHHHHHHHHHh
Q 009352 237 T---YHSNTGYV--APIHVYFPECTEDDLRQIFMRNQAN--QKLYSSFLDIVLRPFCRITKRVDELSTAFSLL 302 (537)
Q Consensus 237 ~---f~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~~--~~l~~~~~~~il~~~~~~~r~l~~L~~~~~~l 302 (537)
. +..+..++ ....+.+++++.++..+||.+.... ..+-+..++-++. ...+|+++|..+...+
T Consensus 248 ~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~---~~~~dir~L~g~l~~l 317 (445)
T PRK12422 248 DLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIE---ALSSNVKSLLHALTLL 317 (445)
T ss_pred HHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---hcCCCHHHHHHHHHHH
Confidence 2 22232222 1258899999999999999643221 1223333333333 3456787877777766
No 125
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7.5e-07 Score=86.10 Aligned_cols=137 Identities=20% Similarity=0.260 Sum_probs=83.6
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHH
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFV 158 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L 158 (537)
++.+.+++|||||||||.+++++.++....|+.|+..+ .++...|.-| ...
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firvvgse----------fvqkylgegp-------------------rmv 237 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE----------FVQKYLGEGP-------------------RMV 237 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH----------HHHHHhccCc-------------------HHH
Confidence 34456999999999999999999999888888887644 2333333211 012
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc--CCC-------CChHHHHHhhhhhc-CCCcEEEE
Q 009352 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW--DKS-------SSILPFLFGLSDIL-KMPEVGMI 228 (537)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~--d~~-------~~lL~~L~rl~e~~-~~~~l~vI 228 (537)
++++. -.+ .+.+-+|++||+|.+... |+. +.+|-.|+.-.+-+ ...|+.||
T Consensus 238 rdvfr----lak---------------enapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvi 298 (408)
T KOG0727|consen 238 RDVFR----LAK---------------ENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVI 298 (408)
T ss_pred HHHHH----HHh---------------ccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEE
Confidence 33332 111 345779999999999642 211 22233333222211 24579999
Q ss_pred EEeCCC--ccccccCCCCCCCceeecCCCCHHHHHHHH
Q 009352 229 FISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (537)
Q Consensus 229 ~Is~~~--~~~f~~r~~~~~p~~I~FppYt~~el~~IL 264 (537)
+.+|-. .++-+-|.|. ....|.||-.++-|-.-++
T Consensus 299 matnradtldpallrpgr-ldrkiefplpdrrqkrlvf 335 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGR-LDRKIEFPLPDRRQKRLVF 335 (408)
T ss_pred EecCcccccCHhhcCCcc-ccccccCCCCchhhhhhhH
Confidence 988853 2333445553 2358999988887766555
No 126
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=1.8e-06 Score=84.70 Aligned_cols=209 Identities=14% Similarity=0.196 Sum_probs=118.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCH--HHHHHHHHHH-H-
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSP--RILFESILNQ-L- 131 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~--~~l~~~Il~~-L- 131 (537)
++.+++++-..|..+... ...|++++|||+|+||-|.+..+++++- +.-..|.-.+..|+ +-+=-..+.+ -
T Consensus 14 ~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 477888888888887663 3468999999999999999999999873 11111221111111 0000000000 0
Q ss_pred hhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHH
Q 009352 132 LLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (537)
Q Consensus 132 ~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~ 211 (537)
...+|++ -| .+-+.++.+++..+...+--.+. .+..--|+||-|+|.|.. |+ =.
T Consensus 92 lEitPSD-aG--------------~~DRvViQellKevAQt~qie~~------~qr~fKvvvi~ead~LT~-dA----Q~ 145 (351)
T KOG2035|consen 92 LEITPSD-AG--------------NYDRVVIQELLKEVAQTQQIETQ------GQRPFKVVVINEADELTR-DA----QH 145 (351)
T ss_pred EEeChhh-cC--------------cccHHHHHHHHHHHHhhcchhhc------cccceEEEEEechHhhhH-HH----HH
Confidence 0111111 11 11122333333222111100011 123456889999999963 32 25
Q ss_pred HHHhhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccc
Q 009352 212 FLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFC 286 (537)
Q Consensus 212 ~L~rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~ 286 (537)
+|.|-.|... .++.+|+++|... +++.+|. ..|..|.++.+|+..+|..-. ....+-.+++..+.+...
T Consensus 146 aLRRTMEkYs-~~~RlIl~cns~SriIepIrSRC-----l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 146 ALRRTMEKYS-SNCRLILVCNSTSRIIEPIRSRC-----LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HHHHHHHHHh-cCceEEEEecCcccchhHHhhhe-----eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 7888888763 5789999988753 4555554 578889999999999996432 223344566677777666
Q ss_pred cccCC-HHHHHHHHHH
Q 009352 287 RITKR-VDELSTAFSL 301 (537)
Q Consensus 287 ~~~r~-l~~L~~~~~~ 301 (537)
+.-|. +..|...+..
T Consensus 220 ~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 220 RNLRRALLMLEAVRVN 235 (351)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 55554 4455554444
No 127
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=1.4e-06 Score=95.20 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=105.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHH
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALI 163 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~ 163 (537)
++++||||-||||+++-++++.|..++.||+.+-.|+..+=++|.+.+..+. .++
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s-------------------------~l~ 383 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHS-------------------------VLD 383 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhcc-------------------------ccc
Confidence 7899999999999999999999999999999999999888888877764331 110
Q ss_pred HHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhh-----cCCCc--------------
Q 009352 164 NVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDI-----LKMPE-------------- 224 (537)
Q Consensus 164 ~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~-----~~~~~-------------- 224 (537)
...+|..||+||+|-= +...+..++.+.+- ...+.
T Consensus 384 ---------------------adsrP~CLViDEIDGa-----~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L 437 (877)
T KOG1969|consen 384 ---------------------ADSRPVCLVIDEIDGA-----PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLL 437 (877)
T ss_pred ---------------------cCCCcceEEEecccCC-----cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccc
Confidence 1357889999999922 11223333333221 00011
Q ss_pred -EEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHhhccccccCC-HHHHHHHHH
Q 009352 225 -VGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVLRPFCRITKR-VDELSTAFS 300 (537)
Q Consensus 225 -l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il~~~~~~~r~-l~~L~~~~~ 300 (537)
--||-|+|+...+-+... ......|+|+|.+..-+++=|..- +....--...+..+.+....+-|. ++.|+..+.
T Consensus 438 ~RPIICICNdLYaPaLR~L-r~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 438 TRPIICICNDLYAPALRPL-RPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLAS 516 (877)
T ss_pred cCCEEEEecCccchhhhhc-ccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 248899998643222111 112258999999998877665321 111112234455555555555554 677777665
Q ss_pred Hh
Q 009352 301 LL 302 (537)
Q Consensus 301 ~l 302 (537)
..
T Consensus 517 ~~ 518 (877)
T KOG1969|consen 517 NV 518 (877)
T ss_pred hc
Confidence 44
No 128
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.51 E-value=7.3e-07 Score=91.09 Aligned_cols=61 Identities=21% Similarity=0.123 Sum_probs=49.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHH
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRIL 123 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l 123 (537)
.+..+.+....+...+.. ..+|+|.|+||||||++++.+.+.++.+++.|+|....++..+
T Consensus 46 ~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhc
Confidence 455555666666655543 4689999999999999999999999999999999988776544
No 129
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.51 E-value=5.8e-07 Score=88.70 Aligned_cols=170 Identities=11% Similarity=0.134 Sum_probs=95.7
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCC
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGY 142 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~ 142 (537)
.+..|..+... ...++++||||+|||||++++++.+++. ..+.|+++....+
T Consensus 32 a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~----------------------- 86 (235)
T PRK08084 32 LLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW----------------------- 86 (235)
T ss_pred HHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-----------------------
Confidence 44555555432 2346899999999999999999887653 4566766532000
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC-CChHHHHHhhhhhcC
Q 009352 143 SSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS-SSILPFLFGLSDILK 221 (537)
Q Consensus 143 ~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~-~~lL~~L~rl~e~~~ 221 (537)
...+ .++. +. ..-+|+|||++.+...... ..++..+-++.|.
T Consensus 87 -------~~~~-------~~~~----~~-----------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-- 129 (235)
T PRK08084 87 -------FVPE-------VLEG----ME-----------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILES-- 129 (235)
T ss_pred -------hhHH-------HHHH----hh-----------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHc--
Confidence 0001 1111 10 1237889999998531100 1233333344442
Q ss_pred CCcEEEEEEeCCCccc-------cccCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhhcccc-ccCCHH
Q 009352 222 MPEVGMIFISSTSPDT-------YHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCR-ITKRVD 293 (537)
Q Consensus 222 ~~~l~vI~Is~~~~~~-------f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~~~~~-~~r~l~ 293 (537)
.+..+|+.|+.+|.. +.+|.. .-..+.+++.+.+++.+||.+.....++ ..=+.+++-+.. ..+|+.
T Consensus 130 -g~~~li~ts~~~p~~l~~~~~~L~SRl~--~g~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r 204 (235)
T PRK08084 130 -GRTRLLITGDRPPRQLNLGLPDLASRLD--WGQIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDREMR 204 (235)
T ss_pred -CCCeEEEeCCCChHHcCcccHHHHHHHh--CCceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHH
Confidence 235788888776533 223332 1148899999999999999642211111 011444544443 445788
Q ss_pred HHHHHHHHh
Q 009352 294 ELSTAFSLL 302 (537)
Q Consensus 294 ~L~~~~~~l 302 (537)
.+..+...+
T Consensus 205 ~l~~~l~~l 213 (235)
T PRK08084 205 TLFMTLDQL 213 (235)
T ss_pred HHHHHHHHH
Confidence 887777776
No 130
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.51 E-value=1.1e-06 Score=98.81 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=91.8
Q ss_pred hcCCChHHHHHHHHHHHcccC----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLN----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
..+.|-+....+|..++.... ...+.++|+||||||||++++.+..+++.+++.++|.+..+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~-------- 223 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-------- 223 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH--------
Confidence 345566665555555432210 11235999999999999999999999999999998765321
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC--
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-- 205 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~-- 205 (537)
...+. . . ..++..+... + ...++||+|||+|.+.....
T Consensus 224 --~~~g~--------~-------~----~~~~~~f~~a----~---------------~~~P~IifIDEiD~l~~~r~~~ 263 (644)
T PRK10733 224 --MFVGV--------G-------A----SRVRDMFEQA----K---------------KAAPCIIFIDEIDAVGRQRGAG 263 (644)
T ss_pred --hhhcc--------c-------H----HHHHHHHHHH----H---------------hcCCcEEEehhHhhhhhccCCC
Confidence 11110 0 0 1233344321 1 23568999999999953211
Q ss_pred ---C----CChHHHHHhhhh-hcCCCcEEEEEEeCCCccccc---cCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 206 ---S----SSILPFLFGLSD-ILKMPEVGMIFISSTSPDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 206 ---~----~~lL~~L~rl~e-~~~~~~l~vI~Is~~~~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
. ...+..|+...+ +.....+.||..+|. ++.++ .|.+ +...+|+|+.++.++..+||...
T Consensus 264 ~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~-p~~lD~Al~Rpg-Rfdr~i~v~~Pd~~~R~~Il~~~ 334 (644)
T PRK10733 264 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR-PDVLDPALLRPG-RFDRQVVVGLPDVRGREQILKVH 334 (644)
T ss_pred CCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCC-hhhcCHHHhCCc-ccceEEEcCCCCHHHHHHHHHHH
Confidence 0 113444433222 221223444444444 44443 3333 22358999999999999998643
No 131
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.6e-07 Score=93.19 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~ 116 (537)
..++++||||||||.++++|..+.+..|..|+...
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 35999999999999999999999998888776543
No 132
>PRK06893 DNA replication initiation factor; Validated
Probab=98.46 E-value=8.9e-07 Score=87.03 Aligned_cols=156 Identities=21% Similarity=0.282 Sum_probs=86.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (537)
.|.++||||||||||++++++.+++ +....|+++.... .+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~----------------------------------~~--- 81 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ----------------------------------YF--- 81 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh----------------------------------hh---
Confidence 3568999999999999999999875 3466676652100 00
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEE-eCCCcc
Q 009352 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFI-SSTSPD 236 (537)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~I-s~~~~~ 236 (537)
....++. + ...-+|||||++.+...+.... .|+.+.+.....+..+|++ ++..|.
T Consensus 82 ~~~~~~~----~-----------------~~~dlLilDDi~~~~~~~~~~~---~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 82 SPAVLEN----L-----------------EQQDLVCLDDLQAVIGNEEWEL---AIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred hHHHHhh----c-----------------ccCCEEEEeChhhhcCChHHHH---HHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 0011111 1 1234889999998853111011 2333222211123344444 555443
Q ss_pred cc-------ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCh--hhhhHHHHHHhhcccc-ccCCHHHHHHHHHHhh
Q 009352 237 TY-------HSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQ--KLYSSFLDIVLRPFCR-ITKRVDELSTAFSLLF 303 (537)
Q Consensus 237 ~f-------~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~--~l~~~~~~~il~~~~~-~~r~l~~L~~~~~~lw 303 (537)
.+ .+|.+ ....+.+++++.++..+||.+..... .+- +.+++-+.. ..+|+..|..+...|.
T Consensus 138 ~l~~~~~~L~sRl~--~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 138 ALSIKLPDLASRLT--WGEIYQLNDLTDEQKIIVLQRNAYQRGIELS----DEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred HccccchhHHHHHh--cCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 22 23322 12477899999999999996432111 122 344444444 4468888888888774
No 133
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.3e-06 Score=91.53 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=100.0
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe------------EEEeccccCCHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF------------VYTSCLSCYSPRILF 124 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~------------~~inc~~~~s~~~l~ 124 (537)
+.++|-+.....|...+... ..++ ++++||+|+||++++..+.+.+-..- ....|..|.+-+.+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i- 95 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI- 95 (365)
T ss_pred hhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH-
Confidence 35788899999999988762 3455 88999999999999999998873210 00114444432221
Q ss_pred HHHHHHHhhccccccCCCCc--cccCCCch--hHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcc
Q 009352 125 ESILNQLLLHKKNAFNGYSS--AKRCEKPS--DFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~--~~r~~~~~--~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L 200 (537)
. .+..|+-. -+.. ..+..+.. =-++.++++.+.+-. ....+.+.|+|||++|.+
T Consensus 96 ---~---~~~HPDl~-~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~---------------~~~~~~~kVviIDead~m 153 (365)
T PRK07471 96 ---A---AGAHGGLL-TLERSWNEKGKRLRTVITVDEVRELISFFGL---------------TAAEGGWRVVIVDTADEM 153 (365)
T ss_pred ---H---ccCCCCeE-EEecccccccccccccccHHHHHHHHHHhCc---------------CcccCCCEEEEEechHhc
Confidence 1 11111100 0000 00000000 013334444332110 012345678899999988
Q ss_pred cccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 201 REWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 201 ~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
-. .-..+|++..|-.+ ++..+|++++.+ +.+++.+.+ ....|.|++++.+++.++|...
T Consensus 154 ~~-----~aanaLLK~LEepp-~~~~~IL~t~~~-~~llpti~S-Rc~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 154 NA-----NAANALLKVLEEPP-ARSLFLLVSHAP-ARLLPTIRS-RCRKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred CH-----HHHHHHHHHHhcCC-CCeEEEEEECCc-hhchHHhhc-cceEEECCCCCHHHHHHHHHHh
Confidence 42 34556777766532 356777777764 334322222 2369999999999999999643
No 134
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.46 E-value=3.9e-06 Score=97.48 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=51.2
Q ss_pred HHhhcCCChHHHHHHHHHHHcccC----C---CCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCC
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLN----S---SMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYS 119 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~----~---~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s 119 (537)
.+.+.++|.+..+..+...+.... . +..+++++||+|||||.+++.+.+.+. .++++++|.++..
T Consensus 562 ~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 562 VLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred HhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 345678999999999999886532 1 123478999999999999999999873 5789999987544
No 135
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.46 E-value=4.4e-06 Score=88.82 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=46.5
Q ss_pred hcCCChHHHHHHHHHHHccc-------------CC-CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009352 58 SRFPGRRVQILELLRLLGTL-------------NS-SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-------------~~-~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~ 116 (537)
+.+.|-+...+.|...+... .. +..+++++||||||||++++.+.+.++.+++.++|.+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 45788888888886655210 01 2357999999999999999999999999999999865
No 136
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.45 E-value=5.5e-06 Score=87.90 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=42.2
Q ss_pred ChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 52 SLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 52 ~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++....+.++..+..++.+...+.. ..+++++||||||||++++.+...+.
T Consensus 169 ~~~~~l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 169 CLEDALNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hHHHHhhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344456678888999999888865 57899999999999999999998875
No 137
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.45 E-value=9.9e-06 Score=85.13 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=50.7
Q ss_pred hHHhhcCCChHHHHHHHHHHHccc-----C-----C--CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 54 DDLLSRFPGRRVQILELLRLLGTL-----N-----S--SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 54 ~~l~~~~~~Re~qi~~L~~ll~~~-----~-----~--~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
+++-+.+.|.++..+.+...+... . . ...+++++||||||||++++.+.+.++.+++.+++..+
T Consensus 8 ~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 8 AELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred HHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 345567899999998887766532 0 1 12469999999999999999999999999999997654
No 138
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.45 E-value=2.5e-06 Score=85.83 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=113.6
Q ss_pred CCChHHHHHHHHHHHcccC-CC-CCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEecc-ccCCHHHHHHHHHHHHhh
Q 009352 60 FPGRRVQILELLRLLGTLN-SS-MPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCL-SCYSPRILFESILNQLLL 133 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~-~~-~~~l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc~-~~~s~~~l~~~Il~~L~~ 133 (537)
+.|-.++...|..++...+ .+ +..+++.||.|+|||.++...+.. .+..+..|... +..+-+..+..|..|+..
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~ 105 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLAL 105 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHH
Confidence 6777788888888886654 23 456999999999999998888865 44455444322 233466777888888865
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
..... ...+..|.+.|..++ ..|+.. +...+.+++.|+||+|..... ..+.+||.|
T Consensus 106 e~~~~---------~k~~gsfte~l~~lL----~~L~~~----------~~~t~~~ViFIldEfDlf~~h-~rQtllYnl 161 (408)
T KOG2228|consen 106 ELNRI---------VKSFGSFTENLSKLL----EALKKG----------DETTSGKVIFILDEFDLFAPH-SRQTLLYNL 161 (408)
T ss_pred HHhhh---------heeecccchhHHHHH----HHHhcC----------CCCCCceEEEEeehhhccccc-hhhHHHHHH
Confidence 43210 111223333333333 333210 122345789999999988753 347899999
Q ss_pred HhhhhhcCCCcEEEEEEeCCCc--cccccCCCCC-CCceeec-CCCCHHHHHHHHH
Q 009352 214 FGLSDILKMPEVGMIFISSTSP--DTYHSNTGYV-APIHVYF-PECTEDDLRQIFM 265 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~--~~f~~r~~~~-~p~~I~F-ppYt~~el~~IL~ 265 (537)
|.+.+....| +|||.+++... +.+-.|+.++ ....|++ |+..-++.++|+.
T Consensus 162 fDisqs~r~P-iciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r 216 (408)
T KOG2228|consen 162 FDISQSARAP-ICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYR 216 (408)
T ss_pred HHHHhhcCCC-eEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHH
Confidence 9998876554 99999987642 3333344433 2234665 5556677777773
No 139
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.43 E-value=1.2e-06 Score=93.49 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=52.8
Q ss_pred hhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCCHHHHH
Q 009352 53 LDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYSPRILF 124 (537)
Q Consensus 53 ~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~s~~~l~ 124 (537)
.+.+.+.++||++.|+.+...+-. +.+++|.||||||||++++.+...... ++.+++|.-. ++..+|
T Consensus 15 ~~~l~~~i~gre~vI~lll~aala----g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft-tp~DLf 83 (498)
T PRK13531 15 SSALEKGLYERSHAIRLCLLAALS----GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVF 83 (498)
T ss_pred HHHHhhhccCcHHHHHHHHHHHcc----CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec-CcHHhc
Confidence 346678899999999999988765 679999999999999999999987653 5677777522 444443
No 140
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.43 E-value=1.6e-06 Score=103.56 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
..|+++||||||||.+|++++.+.+++++.|++.+.
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~f 1666 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKF 1666 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHH
Confidence 359999999999999999999999999999987553
No 141
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.42 E-value=1.1e-06 Score=82.07 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
.|....+.++...+........+|+|+|++||||+.+++.+-+... .+++.|||... +.. . +-..|.|+..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~-~~~-~---~e~~LFG~~~ 75 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL-PEE-L---LESELFGHEK 75 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS--HH-H---HHHHHHEBCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh-hcc-h---hhhhhhcccc
Confidence 4566777777777766555557899999999999999999998764 48999999865 332 2 3345666543
No 142
>PF13173 AAA_14: AAA domain
Probab=98.40 E-value=2e-06 Score=76.46 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=31.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLS 116 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~--~~~~~inc~~ 116 (537)
+.++|+||.|+|||++++.+++.+. ..++|+||..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~ 39 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDD 39 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCC
Confidence 5689999999999999999998876 7899999865
No 143
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=6.4e-06 Score=96.57 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=104.9
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc-CCHHHHHHHHHHHHhhcc
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC-YSPRILFESILNQLLLHK 135 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~-~s~~~l~~~Il~~L~~~~ 135 (537)
+..++.|..-+..|... ...+.++|+||+|.||||++...+...+ +++++++... .++..|+..++..+....
T Consensus 13 ~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~ 86 (903)
T PRK04841 13 LHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQAT 86 (903)
T ss_pred ccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhc
Confidence 45677787766665432 2356799999999999999999998877 8888888643 577888899998885432
Q ss_pred ccccCCCC---ccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 136 KNAFNGYS---SAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 136 ~~~~~g~~---~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
+....... ......... .++..++..+. ...++++||||+++.+.+ +.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~--------------~~~~~~~lvlDD~h~~~~----~~~~~~ 141 (903)
T PRK04841 87 NGHCSKSEALAQKRQYASLS-------SLFAQLFIELA--------------DWHQPLYLVIDDYHLITN----PEIHEA 141 (903)
T ss_pred CcccchhhhhhccCCcCCHH-------HHHHHHHHHHh--------------cCCCCEEEEEeCcCcCCC----hHHHHH
Confidence 21000000 000001111 23333333221 124689999999998843 344444
Q ss_pred HHhhhhhcCCCcEEEEEEeCCCccccccCCC-CCCCceeecC--CCCHHHHHHHHH
Q 009352 213 LFGLSDILKMPEVGMIFISSTSPDTYHSNTG-YVAPIHVYFP--ECTEDDLRQIFM 265 (537)
Q Consensus 213 L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~-~~~p~~I~Fp--pYt~~el~~IL~ 265 (537)
|..+.+..+ +++.+|++|...+.--..+.. ...-..|.-. ++|.+|+.+.+.
T Consensus 142 l~~l~~~~~-~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~ 196 (903)
T PRK04841 142 MRFFLRHQP-ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFD 196 (903)
T ss_pred HHHHHHhCC-CCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHH
Confidence 444444443 678888888764321011100 0011234444 899999999985
No 144
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.35 E-value=1.4e-05 Score=84.16 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=51.0
Q ss_pred HHhhcCCChHHHHHHHHHHHccc---------CC---CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009352 55 DLLSRFPGRRVQILELLRLLGTL---------NS---SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~---------~~---~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~ 118 (537)
.+.+.++|.++..+.+...+... .. ...+++++||||+|||++++.+.+.++.+++.++|.++.
T Consensus 12 ~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 12 ELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred HhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhc
Confidence 44566899999999988777431 00 124699999999999999999999999999999987544
No 145
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.7e-06 Score=92.63 Aligned_cols=133 Identities=19% Similarity=0.244 Sum_probs=82.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREAL 162 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l 162 (537)
.|++|||||||||.++.++....+..++-|...+ +++...|.. . ...++++
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE----------lL~KyIGaS--------E-----------q~vR~lF 753 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLRFISVKGPE----------LLSKYIGAS--------E-----------QNVRDLF 753 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH----------HHHHHhccc--------H-----------HHHHHHH
Confidence 4999999999999999999999988887776543 444444431 1 1244565
Q ss_pred HHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC------CChHHHHHhhhhhc-CCCcEEEEEEeCCCc
Q 009352 163 INVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS------SSILPFLFGLSDIL-KMPEVGMIFISSTSP 235 (537)
Q Consensus 163 ~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~------~~lL~~L~rl~e~~-~~~~l~vI~Is~~~~ 235 (537)
++.- ..+|+|+++||+|.+....+. ..+...|+.-.+=. .+..+-|+. ++.-|
T Consensus 754 ~rA~-------------------~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~a-aTsRp 813 (952)
T KOG0735|consen 754 ERAQ-------------------SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILA-ATSRP 813 (952)
T ss_pred HHhh-------------------ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEE-ecCCc
Confidence 5421 347899999999999854211 12344443321111 122344443 33334
Q ss_pred ccc---ccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 236 DTY---HSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 236 ~~f---~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
|-+ +-|.|. ....|+-+..++.|-.+||.
T Consensus 814 dliDpALLRpGR-lD~~v~C~~P~~~eRl~il~ 845 (952)
T KOG0735|consen 814 DLIDPALLRPGR-LDKLVYCPLPDEPERLEILQ 845 (952)
T ss_pred cccCHhhcCCCc-cceeeeCCCCCcHHHHHHHH
Confidence 433 345553 23588889999999999985
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=89.97 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=98.2
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE---EEeccccCCHHHHHHHHHHHHhh
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV---YTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~---~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
+.+.|-+.....|...+... ..++ +++|||+|+|||++++.+.+.+..... .--|..|.+=+. +..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~--------~~~ 86 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA--------FNE 86 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH--------Hhc
Confidence 35678889999999998652 3445 789999999999999999988752111 123666654322 211
Q ss_pred c-ccc--ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChH
Q 009352 134 H-KKN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSIL 210 (537)
Q Consensus 134 ~-~~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL 210 (537)
. ..+ ..++.+ ... ++.++.+++.+.. . ...++.-|+||||+|.|.. +-.
T Consensus 87 ~~~~n~~~ld~~~----~~~----vd~Ir~li~~~~~-------~--------P~~~~~KVvIIdea~~Ls~-----~a~ 138 (614)
T PRK14971 87 QRSYNIHELDAAS----NNS----VDDIRNLIEQVRI-------P--------PQIGKYKIYIIDEVHMLSQ-----AAF 138 (614)
T ss_pred CCCCceEEecccc----cCC----HHHHHHHHHHHhh-------C--------cccCCcEEEEEECcccCCH-----HHH
Confidence 1 000 001100 001 2234444433211 0 0122345778899999953 345
Q ss_pred HHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 211 PFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 211 ~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.+|++..|..+ .+..+||+++. +.++...+.++ ...+.|++++.+++...|.
T Consensus 139 naLLK~LEepp-~~tifIL~tt~-~~kIl~tI~SR-c~iv~f~~ls~~ei~~~L~ 190 (614)
T PRK14971 139 NAFLKTLEEPP-SYAIFILATTE-KHKILPTILSR-CQIFDFNRIQVADIVNHLQ 190 (614)
T ss_pred HHHHHHHhCCC-CCeEEEEEeCC-chhchHHHHhh-hheeecCCCCHHHHHHHHH
Confidence 67777777643 45778888765 23443322221 2579999999999998885
No 147
>PRK04132 replication factor C small subunit; Provisional
Probab=98.33 E-value=4e-06 Score=95.58 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=101.7
Q ss_pred eEEEC--CCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHH
Q 009352 84 LFVYG--SASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVI 156 (537)
Q Consensus 84 l~I~G--~~GtGKTsiv~~vl~~l-----~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~ 156 (537)
-|+.| |.+.||||+++++.+++ +..++.+|+.+..+...
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~---------------------------------- 612 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINV---------------------------------- 612 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHH----------------------------------
Confidence 46778 99999999999999997 45788999876543321
Q ss_pred HHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcc
Q 009352 157 FVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPD 236 (537)
Q Consensus 157 ~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~ 236 (537)
+++.+..+... .+ ....+.-|+||||+|.|-. .--.+|.++.|-.+ .++.+|+++|.+ .
T Consensus 613 -IR~iIk~~a~~-------~~------~~~~~~KVvIIDEaD~Lt~-----~AQnALLk~lEep~-~~~~FILi~N~~-~ 671 (846)
T PRK04132 613 -IREKVKEFART-------KP------IGGASFKIIFLDEADALTQ-----DAQQALRRTMEMFS-SNVRFILSCNYS-S 671 (846)
T ss_pred -HHHHHHHHHhc-------CC------cCCCCCEEEEEECcccCCH-----HHHHHHHHHhhCCC-CCeEEEEEeCCh-h
Confidence 22222221110 00 0011346888999999963 23457788888643 578899999874 3
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhccccccCC-HHHHHHHH
Q 009352 237 TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCRITKR-VDELSTAF 299 (537)
Q Consensus 237 ~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~~~r~-l~~L~~~~ 299 (537)
++.+...+ ....+.|++++.+++.++|..-.. ...+.+..+..++....+..|. ++.|+.++
T Consensus 672 kIi~tIrS-RC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 672 KIIEPIQS-RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAA 736 (846)
T ss_pred hCchHHhh-hceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33322211 126899999999999988853211 1223456777777777777776 55565544
No 148
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.32 E-value=6.6e-06 Score=80.38 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=43.6
Q ss_pred hcCCChHHHHHHHHHHHcccCCC--CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEE
Q 009352 58 SRFPGRRVQILELLRLLGTLNSS--MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYT 112 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~--~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~i 112 (537)
+.+.|-|.|.+.|..-......+ ..++++||+.|||||++|++++.+.. .+.+.|
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev 86 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEV 86 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEE
Confidence 56899999999988876655543 34699999999999999999998765 344444
No 149
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=6.3e-06 Score=91.80 Aligned_cols=152 Identities=16% Similarity=0.214 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcccCC------CCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009352 65 VQILELLRLLGTLNS------SMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~------~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~ 137 (537)
.||.++..+|..... ..| -++++||||||||.++++++-+-++||+.++..+.. + .+.+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv------E----~~~g---- 386 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV------E----MFVG---- 386 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH------H----Hhcc----
Confidence 567777777766421 223 499999999999999999999999999988865421 1 1111
Q ss_pred ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC----------C
Q 009352 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS----------S 207 (537)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~----------~ 207 (537)
.+. .+.++++.. . ..+-|++|++||+|.+.....+ .
T Consensus 387 ----~~a-----------srvr~lf~~----a---------------r~~aP~iifideida~~~~r~G~~~~~~~~e~e 432 (774)
T KOG0731|consen 387 ----VGA-----------SRVRDLFPL----A---------------RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDERE 432 (774)
T ss_pred ----cch-----------HHHHHHHHH----h---------------hccCCeEEEecccccccccccccccCCCChHHH
Confidence 110 124445532 1 1346889999999998643210 0
Q ss_pred ChHHH-HHhhhhhcCCCcEEEEEEeCC-Ccccc---ccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 208 SILPF-LFGLSDILKMPEVGMIFISST-SPDTY---HSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 208 ~lL~~-L~rl~e~~~~~~l~vI~Is~~-~~~~f---~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
.-|.. |..+--.. .+-.||+++.+ .++-+ +.|.|.. ..+|+.+..+..+-.+|+..+
T Consensus 433 ~tlnQll~emDgf~--~~~~vi~~a~tnr~d~ld~allrpGRf-dr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 433 QTLNQLLVEMDGFE--TSKGVIVLAATNRPDILDPALLRPGRF-DRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred HHHHHHHHHhcCCc--CCCcEEEEeccCCccccCHHhcCCCcc-ccceeccCCchhhhHHHHHHH
Confidence 11233 22332221 22335554333 23333 3455533 258888889999999998654
No 150
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.28 E-value=1e-05 Score=83.12 Aligned_cols=168 Identities=18% Similarity=0.182 Sum_probs=85.2
Q ss_pred CChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009352 61 PGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHKKN 137 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~~~~ 137 (537)
.+-+....++....... ...++ ++++||||+|||+++..+.+.+... .....|..|...+.+ ..+..++
T Consensus 4 ~~~~~~~~~l~~~~~~~-~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~d 75 (325)
T COG0470 4 VPWQEAVKRLLVQALES-GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLI-------PAGNHPD 75 (325)
T ss_pred ccchhHHHHHHHHHHhc-CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHH-------hhcCCCc
Confidence 34445555555555432 13566 9999999999999999999998631 122223222111111 0111111
Q ss_pred ccCCC-CccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhh
Q 009352 138 AFNGY-SSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (537)
Q Consensus 138 ~~~g~-~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl 216 (537)
-. -. .+..+. ..-.++.++.+.+.... ....++.-|++|||+|.+.. +--.+|.+.
T Consensus 76 ~l-el~~s~~~~--~~i~~~~vr~~~~~~~~---------------~~~~~~~kviiidead~mt~-----~A~nallk~ 132 (325)
T COG0470 76 FL-ELNPSDLRK--IDIIVEQVRELAEFLSE---------------SPLEGGYKVVIIDEADKLTE-----DAANALLKT 132 (325)
T ss_pred eE-EecccccCC--CcchHHHHHHHHHHhcc---------------CCCCCCceEEEeCcHHHHhH-----HHHHHHHHH
Confidence 00 00 000000 00112223333322110 00124556888999999964 334567777
Q ss_pred hhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHH
Q 009352 217 SDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (537)
Q Consensus 217 ~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL 264 (537)
.|..+ .+..+|++++. +.++++-+.+ ....+.|+|.+ .+..|.
T Consensus 133 lEep~-~~~~~il~~n~-~~~il~tI~S-Rc~~i~f~~~~--~~~~i~ 175 (325)
T COG0470 133 LEEPP-KNTRFILITND-PSKILPTIRS-RCQRIRFKPPS--RLEAIA 175 (325)
T ss_pred hccCC-CCeEEEEEcCC-hhhccchhhh-cceeeecCCch--HHHHHH
Confidence 77753 57888888885 3444332211 22689998844 444444
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.28 E-value=1e-05 Score=93.79 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=48.5
Q ss_pred HHhhcCCChHHHHHHHHHHHcccC----CCC---CCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCC
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLN----SSM---PPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYS 119 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~----~~~---~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s 119 (537)
.+.++++|=+..+..|...+.... .+. ..++++||+|+|||.+++.+.+.+- ..++.+++.++..
T Consensus 506 ~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 506 TLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred HhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 345678999999999988875321 121 2468999999999999999999873 4677788766543
No 152
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.5e-05 Score=77.72 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=90.2
Q ss_pred hhcCCChHHHHHHHHHHHcccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~ 125 (537)
...+-|-.+||+.|...+.... ++..-+++|||||||||.+++++.+.....|+.|-..
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs---------- 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS---------- 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH----------
Confidence 3567888899999988765431 2333499999999999999999999876555544321
Q ss_pred HHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc--
Q 009352 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-- 203 (537)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~-- 203 (537)
.+++...+. | + . +..++++..+ ..+.++|++||+|.+..-
T Consensus 246 elvqkyvge------g----------a---r----mvrelf~mar---------------tkkaciiffdeidaiggarf 287 (435)
T KOG0729|consen 246 ELVQKYVGE------G----------A---R----MVRELFEMAR---------------TKKACIIFFDEIDAIGGARF 287 (435)
T ss_pred HHHHHHhhh------h----------H---H----HHHHHHHHhc---------------ccceEEEEeeccccccCccc
Confidence 233343332 1 0 1 2222333322 346799999999998621
Q ss_pred C----CCCChHHHHHhhhhhc----CCCcEEEEEEeCCCc--cccccCCCCCCCceeecCCCCHHHHHHHH
Q 009352 204 D----KSSSILPFLFGLSDIL----KMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (537)
Q Consensus 204 d----~~~~lL~~L~rl~e~~----~~~~l~vI~Is~~~~--~~f~~r~~~~~p~~I~FppYt~~el~~IL 264 (537)
| +-+++--.++.|...+ +.-|+.|++.+|-+. +.-+-|.|. ....|.|--.+-+--.+|+
T Consensus 288 ddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgr-ldrkvef~lpdlegrt~i~ 357 (435)
T KOG0729|consen 288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGR-LDRKVEFGLPDLEGRTHIF 357 (435)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcc-cccceeccCCcccccceeE
Confidence 1 1122322222332222 234789988888641 333334442 2246666444444444444
No 153
>PRK05642 DNA replication initiation factor; Validated
Probab=98.27 E-value=6.4e-06 Score=81.23 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=88.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFV 158 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L 158 (537)
++++|||++|+|||.+++++.+++ +..++|+++.+. ... . .+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~------~~~----~--------------------~~----- 90 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL------LDR----G--------------------PE----- 90 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH------Hhh----h--------------------HH-----
Confidence 579999999999999999988653 457778775321 110 0 01
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcccc
Q 009352 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY 238 (537)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f 238 (537)
.++.+ + ..-+||||+++.+.... .--..|+.+.+.....+..+|+.++..|..+
T Consensus 91 --~~~~~----~-----------------~~d~LiiDDi~~~~~~~---~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l 144 (234)
T PRK05642 91 --LLDNL----E-----------------QYELVCLDDLDVIAGKA---DWEEALFHLFNRLRDSGRRLLLAASKSPREL 144 (234)
T ss_pred --HHHhh----h-----------------hCCEEEEechhhhcCCh---HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHc
Confidence 11111 0 11277899999885311 1112344443332112345666666554332
Q ss_pred ---ccCCCCC--CCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhhcccc-ccCCHHHHHHHHHHhh
Q 009352 239 ---HSNTGYV--APIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCR-ITKRVDELSTAFSLLF 303 (537)
Q Consensus 239 ---~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~~~~~-~~r~l~~L~~~~~~lw 303 (537)
.++..++ .-..+.+.+.+.++..+||.......++ ..=+.+++-+.. ..||+..|..+...|.
T Consensus 145 ~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 145 PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2222222 1246778999999999999632111111 001455555554 5567888888887773
No 154
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.27 E-value=2.8e-05 Score=82.43 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=45.9
Q ss_pred hhcCCChHHHHHHHHHHHcc----------cCC------CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009352 57 LSRFPGRRVQILELLRLLGT----------LNS------SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~----------~~~------~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~ 116 (537)
-+.+.|-++.+..|...+.. ... ...+++|+||||||||++++.+.+.++.+++.++|..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~ 151 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATT 151 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhh
Confidence 34568888888888765511 000 1246999999999999999999999999998888754
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.26 E-value=5.9e-06 Score=95.58 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHhhcCCChHHHHHHHHHHHccc---C-CC---CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCC
Q 009352 55 DLLSRFPGRRVQILELLRLLGTL---N-SS---MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYS 119 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~---~-~~---~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s 119 (537)
.+.++++|-+..+..+...+... . .+ .+.++++||+|+|||.+++++.+.+. ..++.+||.++..
T Consensus 563 ~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 563 RLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred HhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 34467899999999998887442 1 12 22478999999999999999999883 4678888876543
No 156
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.8e-06 Score=82.17 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=96.9
Q ss_pred HHhhcCCChHHHHHHHHHHHcccCC-----------CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHH
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLNS-----------SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRIL 123 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~~-----------~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l 123 (537)
+-...+-|-|.||.+|...+.-... +..-+++||+||||||.++++|+++....|..|-.
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvG--------- 252 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVG--------- 252 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhh---------
Confidence 3345678999999999998765431 12239999999999999999999876544333221
Q ss_pred HHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc
Q 009352 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (537)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~ 203 (537)
..+++...++ | + .+ .+++|. ... ..-+-++++||+|.+...
T Consensus 253 -seLiQkylGd------G---p-------kl---vRqlF~----vA~---------------e~apSIvFiDEIdAiGtK 293 (440)
T KOG0726|consen 253 -SELIQKYLGD------G---P-------KL---VRELFR----VAE---------------EHAPSIVFIDEIDAIGTK 293 (440)
T ss_pred -HHHHHHHhcc------c---h-------HH---HHHHHH----HHH---------------hcCCceEEeehhhhhccc
Confidence 1223333222 1 0 12 222332 111 234568899999999742
Q ss_pred --CCC----CChHHHHHhhhhhcC----CCcEEEEEEeCCCc--cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 204 --DKS----SSILPFLFGLSDILK----MPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 204 --d~~----~~lL~~L~rl~e~~~----~~~l~vI~Is~~~~--~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
|.. .++=-.++.|...++ -..+.||+.+|... |+-+-|.|. ....|.||-.+...-..|+.-
T Consensus 294 Ryds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGr-IDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 294 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGR-IDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred cccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCc-cccccccCCCchhhhceeEEE
Confidence 211 122222222222211 23599999988742 555555553 335899999988888888743
No 157
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.26 E-value=7e-06 Score=91.87 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=43.9
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEecccc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSC 117 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~----------~~~~~inc~~~ 117 (537)
.+.|++..+..+...+.. ....+++|+||+|||||++++.+.+... .+++.+||...
T Consensus 155 ~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 467889998888776643 2234699999999999999999986552 36788998764
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.25 E-value=5.9e-06 Score=95.77 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=48.8
Q ss_pred HhhcCCChHHHHHHHHHHHcccC----CC---CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 56 LLSRFPGRRVQILELLRLLGTLN----SS---MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~~----~~---~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
+.++++|-+..+..|...+.... .+ ..+++++||+|||||++++.+.+.+. .++++++|.+..
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 34578899999999998876432 11 13588999999999999999998873 468889987653
No 159
>PHA02244 ATPase-like protein
Probab=98.25 E-value=7.8e-06 Score=84.67 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=46.9
Q ss_pred hhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 53 LDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 53 ~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
++.+-..+.++...+..+...+........+++|+||+|||||++++++...++.+++.+|+
T Consensus 91 l~~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 91 ISGIDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred hhhCCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 33344456666666655555554444446789999999999999999999999999999985
No 160
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7e-06 Score=86.81 Aligned_cols=138 Identities=17% Similarity=0.291 Sum_probs=91.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (537)
.+++++||||+|||+++..+......||+.|- |++. + -|++...+|- ++++.
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii-----Spe~--------m--------iG~sEsaKc~-------~i~k~ 590 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKII-----SPED--------M--------IGLSESAKCA-------HIKKI 590 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEe-----ChHH--------c--------cCccHHHHHH-------HHHHH
Confidence 45899999999999999999999888888773 2221 1 2444444453 34445
Q ss_pred HHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC-----CCCChHHHHHhhhhhcCCCcEEEEEEeCCCcc
Q 009352 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-----KSSSILPFLFGLSDILKMPEVGMIFISSTSPD 236 (537)
Q Consensus 162 l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-----~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~ 236 (537)
++.. -+...-+||+|++++|.+|- .++.+|.+|.-+..-.+-..-.+..++++...
T Consensus 591 F~DA-------------------YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~ 651 (744)
T KOG0741|consen 591 FEDA-------------------YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR 651 (744)
T ss_pred HHHh-------------------hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH
Confidence 5431 12345688999999999873 33567777776654433122455555655555
Q ss_pred ccccCCCC--CCCceeecCCCCH-HHHHHHHHh
Q 009352 237 TYHSNTGY--VAPIHVYFPECTE-DDLRQIFMR 266 (537)
Q Consensus 237 ~f~~r~~~--~~p~~I~FppYt~-~el~~IL~~ 266 (537)
.++...+. .-...|+.|..+. +|+.++|..
T Consensus 652 ~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 652 EVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred HHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 56655552 2235899999988 999999964
No 161
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.21 E-value=6.2e-05 Score=73.53 Aligned_cols=218 Identities=16% Similarity=0.170 Sum_probs=118.5
Q ss_pred ccccCCCCChhHHh--hcCCChHHHHHHHHHHHcccCC-CCCCeEEECCCCCCHHHHHHHHHHhcCC---CeEEEecccc
Q 009352 44 LVFGQEPISLDDLL--SRFPGRRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTSCLSC 117 (537)
Q Consensus 44 ~~f~~~~~~~~~l~--~~~~~Re~qi~~L~~ll~~~~~-~~~~l~I~G~~GtGKTsiv~~vl~~l~~---~~~~inc~~~ 117 (537)
-.|...||+.+.-+ ..|..+.+| ....+...+. +...+.|+|+-|||||.+.++++..+.. ..++|... .
T Consensus 14 ~g~~~~pf~~~~~~~~~~~~a~h~e---~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~-~ 89 (269)
T COG3267 14 FGFSRLPFSWDIQPGLDYWAADHNE---ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKP-T 89 (269)
T ss_pred hhhccCCCccchhhhhhhhhhhhhH---HHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCc-c
Confidence 35566777654322 233333333 2223333332 3447899999999999999977776653 23344432 2
Q ss_pred CCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCC
Q 009352 118 YSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNF 197 (537)
Q Consensus 118 ~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~ 197 (537)
.+...+.+.|+..+... |.+ ++...+......+..... ...+++++++||+
T Consensus 90 ~s~~~~~~ai~~~l~~~-p~~-----------~~~~~~e~~~~~L~al~~-----------------~g~r~v~l~vdEa 140 (269)
T COG3267 90 LSDATLLEAIVADLESQ-PKV-----------NVNAVLEQIDRELAALVK-----------------KGKRPVVLMVDEA 140 (269)
T ss_pred hhHHHHHHHHHHHhccC-ccc-----------hhHHHHHHHHHHHHHHHH-----------------hCCCCeEEeehhH
Confidence 45567778888887541 111 122112222222222111 1345689999999
Q ss_pred CcccccCCCCChHHHHHhhhhhcC--CCcEEEEEEeCCCc-ccc----ccCCCCCCCceeecCCCCHHHHHHHHHhc---
Q 009352 198 ELVREWDKSSSILPFLFGLSDILK--MPEVGMIFISSTSP-DTY----HSNTGYVAPIHVYFPECTEDDLRQIFMRN--- 267 (537)
Q Consensus 198 D~L~~~d~~~~lL~~L~rl~e~~~--~~~l~vI~Is~~~~-~~f----~~r~~~~~p~~I~FppYt~~el~~IL~~~--- 267 (537)
+.|.. +.+..|.++.+... ...+++++|+...- .+. +.....+....|..+|||.+|....|...
T Consensus 141 h~L~~-----~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 141 HDLND-----SALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred hhhCh-----hHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhc
Confidence 98853 45677766655542 11288999988632 111 11112222345888999999998888421
Q ss_pred --CCChhhhhHHHHHHhhccccccCCHHHHHHHH
Q 009352 268 --QANQKLYSSFLDIVLRPFCRITKRVDELSTAF 299 (537)
Q Consensus 268 --r~~~~l~~~~~~~il~~~~~~~r~l~~L~~~~ 299 (537)
.+.+-|....+..+.....++.+-++++...+
T Consensus 216 a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 216 AGLPEPLFSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred cCCCcccCChhHHHHHHHHhccchHHHHHHHHHH
Confidence 12333444555555555544444444444433
No 162
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=1.6e-05 Score=82.34 Aligned_cols=172 Identities=12% Similarity=0.075 Sum_probs=98.7
Q ss_pred cCCC-hHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 59 RFPG-RRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 59 ~~~~-Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
.+.| -+..+..|...+.. ...++ +++|||+|+|||++++.+++.+-.. ..---|..|.+-+.+.. +.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~--~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~-------~~ 76 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAK--NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS-------GN 76 (329)
T ss_pred HHHhhHHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc-------CC
Confidence 3444 56677788888764 23455 6899999999999999999886421 11124666654333211 11
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
.++- .-+.....--. ++.++.+.+.+-.. ...+..-|+|||++|++.. +-..+|+
T Consensus 77 hpD~-~~i~~~~~~i~----id~ir~l~~~~~~~---------------~~~~~~kvviI~~a~~~~~-----~a~NaLL 131 (329)
T PRK08058 77 HPDV-HLVAPDGQSIK----KDQIRYLKEEFSKS---------------GVESNKKVYIIEHADKMTA-----SAANSLL 131 (329)
T ss_pred CCCE-EEeccccccCC----HHHHHHHHHHHhhC---------------CcccCceEEEeehHhhhCH-----HHHHHHH
Confidence 1110 00000000011 22344444332110 0123445788899999854 2345777
Q ss_pred hhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 215 GLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 215 rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
+.-|-.+ +++.+||+++. +.++++.+.+ ....++|++.+.+++.++|...
T Consensus 132 K~LEEPp-~~~~~Il~t~~-~~~ll~TIrS-Rc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 132 KFLEEPS-GGTTAILLTEN-KHQILPTILS-RCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHhcCCC-CCceEEEEeCC-hHhCcHHHHh-hceeeeCCCCCHHHHHHHHHHc
Confidence 7777643 56888888875 3444433222 1268999999999999999643
No 163
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.20 E-value=1.3e-05 Score=83.14 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
.|+...+.++...+........+|+|+|++||||+++++.+-.... .+++.|||....
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS 62 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence 4566677777776666545567899999999999999998876554 489999998643
No 164
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.19 E-value=8.9e-05 Score=77.84 Aligned_cols=193 Identities=15% Similarity=0.174 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHH-HHHHHhcCCCeEEEeccccC---CHHHHHHHHHHHHhhcccc-
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHLSRPFVYTSCLSCY---SPRILFESILNQLLLHKKN- 137 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv-~~vl~~l~~~~~~inc~~~~---s~~~l~~~Il~~L~~~~~~- 137 (537)
|.+.+++|...|... +...|+|+||.|+||+.+| ..+++.-. .+.+|+|.... +-..+...+.+++ |..|.
T Consensus 1 R~e~~~~L~~wL~e~--~~TFIvV~GPrGSGK~elV~d~~L~~r~-~vL~IDC~~i~~ar~D~~~I~~lA~qv-GY~PvF 76 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN--PNTFIVVQGPRGSGKRELVMDHVLKDRK-NVLVIDCDQIVKARGDAAFIKNLASQV-GYFPVF 76 (431)
T ss_pred CchHHHHHHHHHhcC--CCeEEEEECCCCCCccHHHHHHHHhCCC-CEEEEEChHhhhccChHHHHHHHHHhc-CCCcch
Confidence 667889999998763 2335999999999999988 88887744 68999999754 3356666666665 33221
Q ss_pred -cc-----------CCCCcccc--CCCchhHHHHHHHHHHHHHHHhhhhhhccc--cc---------ccccccCCcEEEE
Q 009352 138 -AF-----------NGYSSAKR--CEKPSDFVIFVREALINVIDSLKENAEKTS--TS---------KLKGQVNGKMIYL 192 (537)
Q Consensus 138 -~~-----------~g~~~~~r--~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s--~g---------~~~~~~~~~~~vl 192 (537)
|. .|....+. .++.. ..++++|+.....|+..+.... .+ +-..++. ...||
T Consensus 77 sw~nSiss~IDLa~qGltGqKaGfSes~e---~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe-~~PVV 152 (431)
T PF10443_consen 77 SWMNSISSFIDLAVQGLTGQKAGFSESLE---TQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE-RRPVV 152 (431)
T ss_pred HHHHHHHHHHHHHHhhccccccCCCCChH---HHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc-cCCEE
Confidence 00 01100111 12222 3566666665555555332111 00 0012233 34588
Q ss_pred EEeCCCcccccCCCCChHHH-HHhhhhhcCCCc-EEEEEEeCCCc-cccccCCC-CCCCceeecCCCCHHHHHHHHHh
Q 009352 193 IFDNFELVREWDKSSSILPF-LFGLSDILKMPE-VGMIFISSTSP-DTYHSNTG-YVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 193 VLDe~D~L~~~d~~~~lL~~-L~rl~e~~~~~~-l~vI~Is~~~~-~~f~~r~~-~~~p~~I~FppYt~~el~~IL~~ 266 (537)
|||++..-.+ . +++++. |..+.-.+--.| -.|||++++.. .+-+.+.- ......|.+..-+.+-..+.+..
T Consensus 153 VIdnF~~k~~--~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 153 VIDNFLHKAE--E-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred EEcchhccCc--c-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 8999987543 3 455443 443322221123 46888888752 22121111 11225788999999888888754
No 165
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=1.6e-05 Score=82.20 Aligned_cols=149 Identities=16% Similarity=0.123 Sum_probs=86.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCc--cccCCCchhHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSS--AKRCEKPSDFVIFV 158 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~--~~r~~~~~~f~~~L 158 (537)
.++++||+|+|||++++.+++.+-. +..--.|.+|.+=+.+. .+..|+- .-+.. ..+.-. ++.+
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~-------~g~HPD~-~~i~~~~~~~~i~----id~i 91 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLR-------AGSHPDN-FVLEPEEADKTIK----VDQV 91 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHh-------cCCCCCE-EEEeccCCCCCCC----HHHH
Confidence 4889999999999999999998752 11122577776543321 1221210 00000 000111 3345
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcccc
Q 009352 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY 238 (537)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f 238 (537)
+++.+.+... ...+..-|+|||++|++.. +--.+|++.-|-.+ ++..+|++++.+ +.+
T Consensus 92 R~l~~~~~~~---------------~~~~~~kv~iI~~a~~m~~-----~aaNaLLK~LEEPp-~~~~fiL~t~~~-~~l 149 (328)
T PRK05707 92 RELVSFVVQT---------------AQLGGRKVVLIEPAEAMNR-----NAANALLKSLEEPS-GDTVLLLISHQP-SRL 149 (328)
T ss_pred HHHHHHHhhc---------------cccCCCeEEEECChhhCCH-----HHHHHHHHHHhCCC-CCeEEEEEECCh-hhC
Confidence 5555433211 0122334567799999964 23456777766643 568888888773 444
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 239 HSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 239 ~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
++.+.++ ...+.|++.+.+++.+.|..
T Consensus 150 l~TI~SR-c~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 150 LPTIKSR-CQQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred cHHHHhh-ceeeeCCCcCHHHHHHHHHH
Confidence 4332221 25799999999999999964
No 166
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.4e-06 Score=85.16 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=103.9
Q ss_pred hcCCChHHHHHHHHHHHcccC------------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLN------------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~------------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~ 125 (537)
+.+-|=|..+++|..++--.. .++..|++|||||||||.+++++.++.+-.++-|......+ +.+
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~-KWf-- 168 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS-KWF-- 168 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch-hhH--
Confidence 445666666766666542211 12345999999999999999999999998887776543332 111
Q ss_pred HHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC
Q 009352 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (537)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~ 205 (537)
+ + =+++...++.-. .+-.|.+|+|||+|...-...
T Consensus 169 -------g-------------------E----~eKlv~AvFslA---------------sKl~P~iIFIDEvds~L~~R~ 203 (386)
T KOG0737|consen 169 -------G-------------------E----AQKLVKAVFSLA---------------SKLQPSIIFIDEVDSFLGQRR 203 (386)
T ss_pred -------H-------------------H----HHHHHHHHHhhh---------------hhcCcceeehhhHHHHHhhcc
Confidence 1 1 001122222110 123588999999998873221
Q ss_pred CC------ChHHHHHhhhh-hcCCCcEEEEEE-eCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhhHH
Q 009352 206 SS------SILPFLFGLSD-ILKMPEVGMIFI-SSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSF 277 (537)
Q Consensus 206 ~~------~lL~~L~rl~e-~~~~~~l~vI~I-s~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~ 277 (537)
+. .+=..|+-+.+ +....+-+|+++ +++.|..++.++-.+-|..++.+-.+.+|-.+||.---..+.+-+++
T Consensus 204 s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~v 283 (386)
T KOG0737|consen 204 STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDV 283 (386)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCccc
Confidence 11 11123333322 222234344443 33334333332222334455555555777777774322222222222
Q ss_pred -HHHHhhccccccC-CHHHHHHHHHHh
Q 009352 278 -LDIVLRPFCRITK-RVDELSTAFSLL 302 (537)
Q Consensus 278 -~~~il~~~~~~~r-~l~~L~~~~~~l 302 (537)
++.+.....++++ |+.+++..+...
T Consensus 284 D~~~iA~~t~GySGSDLkelC~~Aa~~ 310 (386)
T KOG0737|consen 284 DLDEIAQMTEGYSGSDLKELCRLAALR 310 (386)
T ss_pred CHHHHHHhcCCCcHHHHHHHHHHHhHh
Confidence 3555566667775 788887766443
No 167
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=9.6e-06 Score=88.08 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=84.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (537)
+.+++|||||||||.++++|+++.+..+.+|||.+ ++..+.+.. -..|+.+
T Consensus 219 rg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~pe----------li~k~~gEt-------------------e~~LR~~ 269 (693)
T KOG0730|consen 219 RGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPE----------LISKFPGET-------------------ESNLRKA 269 (693)
T ss_pred CCccccCCCCCChHHHHHHHHHHhCceeEecccHH----------HHHhcccch-------------------HHHHHHH
Confidence 45999999999999999999999998888888854 333443321 1236666
Q ss_pred HHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC-C----CCChHHHHHhhhhhcC-CCcEEEEEEeCCCc
Q 009352 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-K----SSSILPFLFGLSDILK-MPEVGMIFISSTSP 235 (537)
Q Consensus 162 l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-~----~~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~ 235 (537)
++.... ...+.+|++||+|.|.... + ...+...|+.|.+..+ ..++.||..++. |
T Consensus 270 f~~a~k------------------~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnr-p 330 (693)
T KOG0730|consen 270 FAEALK------------------FQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNR-P 330 (693)
T ss_pred HHHHhc------------------cCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCC-c
Confidence 654211 1227899999999998421 1 1345677778877764 234555555554 4
Q ss_pred ccc---ccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 236 DTY---HSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 236 ~~f---~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
+.+ +.| |. .+..+..--++.++-.+||.
T Consensus 331 ~sld~alRR-gR-fd~ev~IgiP~~~~RldIl~ 361 (693)
T KOG0730|consen 331 DSLDPALRR-GR-FDREVEIGIPGSDGRLDILR 361 (693)
T ss_pred cccChhhhc-CC-CcceeeecCCCchhHHHHHH
Confidence 444 344 42 33455555566666666664
No 168
>PRK09087 hypothetical protein; Validated
Probab=98.15 E-value=1.1e-05 Score=79.04 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=56.4
Q ss_pred EEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcccc---ccCCCCC--CCceeecCCCCHHHHHHHHH
Q 009352 191 YLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY---HSNTGYV--APIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 191 vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f---~~r~~~~--~p~~I~FppYt~~el~~IL~ 265 (537)
+|+||++|.+.. + ++ .|+.+.+.....+..+|+.++..|..+ .++..++ ....+.+++++.++..+||.
T Consensus 90 ~l~iDDi~~~~~-~--~~---~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 90 PVLIEDIDAGGF-D--ET---GLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred eEEEECCCCCCC-C--HH---HHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 677899998732 2 22 234433322112455666666544322 2222221 23589999999999999996
Q ss_pred hcCCCh--hhhhHHHHHHhhcccc-ccCCHHHHHHHHHHh
Q 009352 266 RNQANQ--KLYSSFLDIVLRPFCR-ITKRVDELSTAFSLL 302 (537)
Q Consensus 266 ~~r~~~--~l~~~~~~~il~~~~~-~~r~l~~L~~~~~~l 302 (537)
+..... .+- +.+++.+.. ..|++..+..+...|
T Consensus 164 ~~~~~~~~~l~----~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFADRQLYVD----PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHcCCCCC----HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 432211 122 334443333 446788877777666
No 169
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.15 E-value=1.9e-05 Score=87.38 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=49.2
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecccc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSC 117 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~ 117 (537)
.+.|+...+.++...+........+|+|+|++||||+++++.+-.... .+++.|||...
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 567888888888888776555567899999999999999999988754 48999999875
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.14 E-value=1.2e-05 Score=70.65 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=31.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCC---eEEEeccccC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRP---FVYTSCLSCY 118 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~---~~~inc~~~~ 118 (537)
...++|+||||||||++++.++..+... +++++|....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 3568999999999999999999998864 7888776543
No 171
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=3.1e-05 Score=79.60 Aligned_cols=173 Identities=13% Similarity=0.122 Sum_probs=99.6
Q ss_pred hcCCChHHHHHHHHHHHcccCCCC-CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSM-PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~-~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
+.+.|-+.....|...+... .. +.++++||+|+||++++..+++.+-..- .|..|.+-+ + . . +..|
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~---~c~~c~~~~--~---~-~--~~hP 70 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQG---SPSKNIRRR--L---E-E--GNHP 70 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCC---CCCCcHhcc--c---c-c--CCCC
Confidence 46788899999999998662 23 4589999999999999999998864322 344443321 0 0 0 0001
Q ss_pred cc--------cCCCCc-----cccC--CCc--hhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCc
Q 009352 137 NA--------FNGYSS-----AKRC--EKP--SDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFEL 199 (537)
Q Consensus 137 ~~--------~~g~~~-----~~r~--~~~--~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~ 199 (537)
+- ..|... ...+ ++. .=-++..+++.+.+ . . . ...+..-|+|||++|.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l-~---~----~-------p~~~~~kVvII~~ae~ 135 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFL-S---R----P-------PLEAPRKVVVIEDAET 135 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHH-c---c----C-------cccCCceEEEEEchhh
Confidence 00 001000 0000 000 00122233332221 1 0 0 1123456888899999
Q ss_pred ccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 200 VREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 200 L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
+.. .--.+|++.-|-. |+..+|++++. ++++++.+.++ ...|.|++++.+++.++|...
T Consensus 136 m~~-----~aaNaLLK~LEEP--p~~~fILi~~~-~~~Ll~TI~SR-cq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 136 MNE-----AAANALLKTLEEP--GNGTLILIAPS-PESLLPTIVSR-CQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred cCH-----HHHHHHHHHHhCC--CCCeEEEEECC-hHhCcHHHHhh-ceEEecCCCCHHHHHHHHHHh
Confidence 854 2335677877764 36678888875 45655433332 268999999999999999653
No 172
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.9e-06 Score=87.34 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=67.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC-CeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR-PFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~-~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (537)
-|++|||||||||.++|++-..|+. ..-.||..+ |++...|... ..++++
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe----------IL~KYVGeSE-------------------~NvR~L 308 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE----------ILNKYVGESE-------------------ENVRKL 308 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH----------HHHHhhcccH-------------------HHHHHH
Confidence 4899999999999999999998873 444567654 5566554311 124445
Q ss_pred HHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC--------CCChHHHHHh-h--hhhcCCCcEEEEEE
Q 009352 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK--------SSSILPFLFG-L--SDILKMPEVGMIFI 230 (537)
Q Consensus 162 l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~--------~~~lL~~L~r-l--~e~~~~~~l~vI~I 230 (537)
+...-+.-+. ......-+|||+||+|.+.+..+ +.+++..|+. + .|. +.|+-||..
T Consensus 309 FaDAEeE~r~-----------~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq--LNNILVIGM 375 (744)
T KOG0741|consen 309 FADAEEEQRR-----------LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ--LNNILVIGM 375 (744)
T ss_pred HHhHHHHHHh-----------hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh--hhcEEEEec
Confidence 4432211111 01234578999999999986431 1245555543 3 233 457888888
Q ss_pred eCC
Q 009352 231 SST 233 (537)
Q Consensus 231 s~~ 233 (537)
+|-
T Consensus 376 TNR 378 (744)
T KOG0741|consen 376 TNR 378 (744)
T ss_pred cCc
Confidence 886
No 173
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.3e-05 Score=82.15 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcccC---CCC----CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009352 64 RVQILELLRLLGTLN---SSM----PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 64 e~qi~~L~~ll~~~~---~~~----~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
+..++.|..++.... .-+ +.-++||||||||||.|.++++.|+..+.-++..+....
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n---------------- 274 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD---------------- 274 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc----------------
Confidence 466788888886642 111 347999999999999999999999987776664332211
Q ss_pred cccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc---CCC-----C-
Q 009352 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW---DKS-----S- 207 (537)
Q Consensus 137 ~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~---d~~-----~- 207 (537)
++ |+.+|.. ..+ .-||||.++|.=.+. ... +
T Consensus 275 ---------------~d----Lr~LL~~--------------------t~~-kSIivIEDIDcs~~l~~~~~~~~~~~~~ 314 (457)
T KOG0743|consen 275 ---------------SD----LRHLLLA--------------------TPN-KSILLIEDIDCSFDLRERRKKKKENFEG 314 (457)
T ss_pred ---------------HH----HHHHHHh--------------------CCC-CcEEEEeecccccccccccccccccccC
Confidence 11 4445432 122 347778888865321 000 0
Q ss_pred ----ChHHHHHhhhhhcC--CCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 208 ----SILPFLFGLSDILK--MPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 208 ----~lL~~L~rl~e~~~--~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
--|..|+..-+-+. +-+=.||+.+++..+++++ |.|. -..||++.-.+.+++.....+
T Consensus 315 ~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGR-mDmhI~mgyCtf~~fK~La~n 381 (457)
T KOG0743|consen 315 DLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGR-MDMHIYMGYCTFEAFKTLASN 381 (457)
T ss_pred CcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCc-ceeEEEcCCCCHHHHHHHHHH
Confidence 11344444433221 2124566666666777754 4443 346999998898888777753
No 174
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.06 E-value=4e-05 Score=84.21 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=50.5
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
.+.|+...++++...+........+|+|+|++||||+.+++.+-.... .+++.|||....
T Consensus 188 ~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 478888888888888877655567899999999999999999988754 589999998764
No 175
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.06 E-value=4.5e-05 Score=85.22 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=113.9
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc--CCCeEEEecccc-CCHHHHHHHHHHHHhh
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL--SRPFVYTSCLSC-YSPRILFESILNQLLL 133 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l--~~~~~~inc~~~-~s~~~l~~~Il~~L~~ 133 (537)
+...+-|..-++.|....+ ++-++|+-|.|.||||++....+.+ +..+++++|.+. ..+..|+..++.++..
T Consensus 18 ~~~~v~R~rL~~~L~~~~~-----~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 18 PDNYVVRPRLLDRLRRAND-----YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred cccccccHHHHHHHhcCCC-----ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 4566777777666654322 4569999999999999999997633 357899999875 5688999999999976
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
..+.... ......|.+... -+..+++.++..+.. ..+++++|||+-+++.+ +.+-.+|
T Consensus 93 ~~p~~~~-~a~~l~q~~~~~---~l~~l~~~L~~Ela~--------------~~~pl~LVlDDyHli~~----~~l~~~l 150 (894)
T COG2909 93 ATPTLGD-EAQTLLQKHQYV---SLESLLSSLLNELAS--------------YEGPLYLVLDDYHLISD----PALHEAL 150 (894)
T ss_pred hCccccH-HHHHHHHhcccc---cHHHHHHHHHHHHHh--------------hcCceEEEeccccccCc----ccHHHHH
Confidence 6543110 000011111110 122344444444432 45789999999999964 5677788
Q ss_pred HhhhhhcCCCcEEEEEEeCCCccccccCC--C----CCCCceeecCCCCHHHHHHHHH
Q 009352 214 FGLSDILKMPEVGMIFISSTSPDTYHSNT--G----YVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~~~f~~r~--~----~~~p~~I~FppYt~~el~~IL~ 265 (537)
-++.+..+ +|+.+|++|...|.-.+.+. . ...... =.++.+|..+.|.
T Consensus 151 ~fLl~~~P-~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~---Lrf~~eE~~~fl~ 204 (894)
T COG2909 151 RFLLKHAP-ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE---LRFDTEEAAAFLN 204 (894)
T ss_pred HHHHHhCC-CCeEEEEEeccCCCCcccceeehhhHHhcChHh---hcCChHHHHHHHH
Confidence 88888875 79999999988653222111 1 001112 2357788888774
No 176
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.06 E-value=0.0001 Score=88.64 Aligned_cols=51 Identities=29% Similarity=0.423 Sum_probs=42.8
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.+.++||+.++++|..++.........+-|+|++|+||||+++.+...+..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 457899999999999998764444556889999999999999999887653
No 177
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.06 E-value=1.6e-05 Score=92.71 Aligned_cols=159 Identities=20% Similarity=0.331 Sum_probs=101.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVRE 160 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~ 160 (537)
.-|++|.||+++|||+.+..+.+..+.+++.||-.++.... ...|......+|.- ++.+ +
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlq--------eYiGTyvTdd~G~l------sFkE------G 947 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQ--------EYIGTYVTDDDGSL------SFKE------G 947 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHH--------HHhhceeecCCCce------eeeh------h
Confidence 45799999999999999999999999999999988876532 22232222223310 1111 1
Q ss_pred HHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcC---CCcE---------EEE
Q 009352 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK---MPEV---------GMI 228 (537)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~---~~~l---------~vI 228 (537)
++ ++.++ +..+|||||.. | ++.++|.+|-||.+--. +|.. -.+
T Consensus 948 vL---VeAlR-----------------~GyWIVLDELN-L----ApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~l 1002 (4600)
T COG5271 948 VL---VEALR-----------------RGYWIVLDELN-L----APTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRL 1002 (4600)
T ss_pred HH---HHHHh-----------------cCcEEEeeccc-c----CcHHHHHHHHHhhccccceecCCcceeeccCCCeeE
Confidence 22 12222 34689999987 2 45789999998854211 2321 135
Q ss_pred EEeCCCcccc-----ccCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhhcccc
Q 009352 229 FISSTSPDTY-----HSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCR 287 (537)
Q Consensus 229 ~Is~~~~~~f-----~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~~~~~ 287 (537)
|.++.+|--| ++|.....-..+||..-.++|+..||. .|. .+.++|+.-++.++.+
T Consensus 1003 FATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ILh-~rc--~iapSyakKiVeVyr~ 1063 (4600)
T COG5271 1003 FATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEILH-GRC--EIAPSYAKKIVEVYRG 1063 (4600)
T ss_pred EeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHHHh-ccC--ccCHHHHHHHHHHHHH
Confidence 5666665333 222211122589999999999999994 554 3556777777776653
No 178
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.05 E-value=2e-05 Score=79.05 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=94.4
Q ss_pred cccCCCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009352 45 VFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 45 ~f~~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~ 124 (537)
+-+..|-.+++++.. ++.+..+.++.+. .+.|+++.|||||||||+++.++.+.+..++- +..
T Consensus 32 vekyrP~~l~dv~~~----~ei~st~~~~~~~--~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~--------~~~--- 94 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQ----EPIWSTENRYSGM--PGLPHLLFYGPPGTGKTSTILANARDFYSPHP--------TTS--- 94 (360)
T ss_pred ccCCCCchhhhHhcC----CchhhHHHHhccC--CCCCcccccCCCCCCCCCchhhhhhhhcCCCC--------chh---
Confidence 345566566554433 5666777777443 35678999999999999999999998764311 111
Q ss_pred HHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
.+.++ ..++..|.+. .++-...+ ...+. .+ .++ .....-.+||||+|.... +
T Consensus 95 --m~lel---naSd~rgid~-------------vr~qi~~f-ast~~----~~--~fs--t~~~fKlvILDEADaMT~-~ 146 (360)
T KOG0990|consen 95 --MLLEL---NASDDRGIDP-------------VRQQIHLF-ASTQQ----PT--TYS--THAAFKLVILDEADAMTR-D 146 (360)
T ss_pred --HHHHh---hccCccCCcc-------------hHHHHHHH-Hhhcc----ce--ecc--ccCceeEEEecchhHhhH-H
Confidence 11222 1112233321 00011000 00000 00 000 012456788999998863 3
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r 268 (537)
.+ .+|.|..|-.. .|.++.+|++.+ ....+-..+ ......|.|.+..+...++...+
T Consensus 147 -AQ---nALRRviek~t-~n~rF~ii~n~~-~ki~pa~qs-Rctrfrf~pl~~~~~~~r~shi~ 203 (360)
T KOG0990|consen 147 -AQ---NALRRVIEKYT-ANTRFATISNPP-QKIHPAQQS-RCTRFRFAPLTMAQQTERQSHIR 203 (360)
T ss_pred -HH---HHHHHHHHHhc-cceEEEEeccCh-hhcCchhhc-ccccCCCCCCChhhhhhHHHHHH
Confidence 23 35667655553 578888888763 222221111 12467899999999888886443
No 179
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.05 E-value=4.3e-05 Score=79.11 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=50.4
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
.+.+.|+...+.++...+........+|+|+|.+||||+++++.+-.... .+++.|||....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~ 69 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC
Confidence 34578888888888888877655567899999999999999998876544 489999998743
No 180
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.04 E-value=3.7e-05 Score=80.65 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=98.6
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh----cCCCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH----LSRPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~----l~~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
.+.+.|=.....++.+-+......+.+++|+|++||||+.+++.+-.. ...+++.+||..+...-...+ |.
T Consensus 77 ~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~e-----LF 151 (403)
T COG1221 77 LDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAE-----LF 151 (403)
T ss_pred hhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHH-----Hh
Confidence 345555555665555555443334568999999999999988877633 235899999998776544333 66
Q ss_pred hccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 133 LHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 133 ~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
|+.+....|-.. .+. ++++. ..++ .|+|||+.+|- ..+-..
T Consensus 152 G~~kGaftGa~~-~k~-----------Glfe~--------------------A~GG--tLfLDEI~~LP-----~~~Q~k 192 (403)
T COG1221 152 GHEKGAFTGAQG-GKA-----------GLFEQ--------------------ANGG--TLFLDEIHRLP-----PEGQEK 192 (403)
T ss_pred ccccceeecccC-CcC-----------chhee--------------------cCCC--EEehhhhhhCC-----HhHHHH
Confidence 766554444211 111 13321 1222 67899999885 344455
Q ss_pred HHhhhhh---c-------CCCcEEEEEEeCCCc-ccccc--CCCC-CCCceeecCCCCHHHHHHHH
Q 009352 213 LFGLSDI---L-------KMPEVGMIFISSTSP-DTYHS--NTGY-VAPIHVYFPECTEDDLRQIF 264 (537)
Q Consensus 213 L~rl~e~---~-------~~~~l~vI~Is~~~~-~~f~~--r~~~-~~p~~I~FppYt~~el~~IL 264 (537)
|++..|- . ...++.+|+.++... +.+.. ..-. ..+..|+.||..+- ..+|+
T Consensus 193 Ll~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER-~~Di~ 257 (403)
T COG1221 193 LLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRER-KEDIL 257 (403)
T ss_pred HHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhc-hhhHH
Confidence 6655443 1 124578888877754 33332 1112 35679999999876 55555
No 181
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=3.8e-05 Score=79.12 Aligned_cols=167 Identities=11% Similarity=-0.002 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhccccccC
Q 009352 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHKKNAFN 140 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~ 140 (537)
.....+|.+.+... ..++ ++++||+|+||+++++.+.+.+-.. ..--.|..|.+=+.+- .+..|+-.
T Consensus 8 ~~~~~~l~~~~~~~--rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~-------~g~HPD~~- 77 (325)
T PRK06871 8 QPTYQQITQAFQQG--LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQ-------AGNHPDFH- 77 (325)
T ss_pred HHHHHHHHHHHHcC--CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHh-------cCCCCCEE-
Confidence 45566777777552 2344 7799999999999999999887421 1112477776533221 12222110
Q ss_pred CCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhc
Q 009352 141 GYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDIL 220 (537)
Q Consensus 141 g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~ 220 (537)
-+. +.....+ -++..+++.+.+... ...++.-|+|||++|++.. .--.+|++.-|--
T Consensus 78 ~i~-p~~~~~I--~id~iR~l~~~~~~~---------------~~~g~~KV~iI~~a~~m~~-----~AaNaLLKtLEEP 134 (325)
T PRK06871 78 ILE-PIDNKDI--GVDQVREINEKVSQH---------------AQQGGNKVVYIQGAERLTE-----AAANALLKTLEEP 134 (325)
T ss_pred EEc-cccCCCC--CHHHHHHHHHHHhhc---------------cccCCceEEEEechhhhCH-----HHHHHHHHHhcCC
Confidence 000 0000011 133455444432110 1133455778899999964 2235777877764
Q ss_pred CCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 221 KMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 221 ~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+ +++.+|++++. ++.+++.+.++ ...+.|+|.+.+++.+.|..
T Consensus 135 p-~~~~fiL~t~~-~~~llpTI~SR-C~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 135 R-PNTYFLLQADL-SAALLPTIYSR-CQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred C-CCeEEEEEECC-hHhCchHHHhh-ceEEeCCCCCHHHHHHHHHH
Confidence 3 57777887766 44444333221 26899999999999999964
No 182
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.02 E-value=3.2e-05 Score=76.59 Aligned_cols=48 Identities=10% Similarity=0.308 Sum_probs=33.5
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~in 113 (537)
.+..+..+.........+++++|++|||||+++.+++.++ +..++|++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444555554322223579999999999999999999887 34566664
No 183
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.02 E-value=4.3e-05 Score=79.22 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=53.2
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~ 124 (537)
..+.|+++.+..+...+.. +.++++-|+||||||++++.+.+.++.++..|+|....++.+++
T Consensus 24 ~~~~g~~~~~~~~l~a~~~----~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 24 KVVVGDEEVIELALLALLA----GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLL 86 (329)
T ss_pred CeeeccHHHHHHHHHHHHc----CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhc
Confidence 3467788888777666654 57999999999999999999999999999999999888776554
No 184
>PRK12377 putative replication protein; Provisional
Probab=98.02 E-value=2.6e-05 Score=77.40 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=27.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc 114 (537)
..+++|+|+||||||.++.++++.+. ..++|++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 46799999999999999999998873 45566553
No 185
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.8e-05 Score=84.66 Aligned_cols=157 Identities=17% Similarity=0.272 Sum_probs=96.7
Q ss_pred CCChHHHHHHHHHHHcccCCCC-------CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 60 FPGRRVQILELLRLLGTLNSSM-------PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~-------~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
-++++.-+.++...+.+...++ +.+++||+||||||++|+++.++++..+..|+|.+.. .+-.
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~----------~~s~ 472 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELV----------AESA 472 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHh----------hccc
Confidence 4788888889999998865433 3488999999999999999999999999999985421 1111
Q ss_pred hccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccc-ccCCCCChHH
Q 009352 133 LHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR-EWDKSSSILP 211 (537)
Q Consensus 133 ~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~-~~d~~~~lL~ 211 (537)
.+. + ..|...+.+ .+ ...+.||+|-++|-|. +.|+ .+.+.
T Consensus 473 ~~~----------------e---tkl~~~f~~----a~---------------~~~pavifl~~~dvl~id~dg-ged~r 513 (953)
T KOG0736|consen 473 SHT----------------E---TKLQAIFSR----AR---------------RCSPAVLFLRNLDVLGIDQDG-GEDAR 513 (953)
T ss_pred chh----------------H---HHHHHHHHH----Hh---------------hcCceEEEEeccceeeecCCC-chhHH
Confidence 110 0 012223322 11 3468999999999987 2233 22222
Q ss_pred HHHhhh-----hhcCCCcEEEEEEeCCCc-cccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 212 FLFGLS-----DILKMPEVGMIFISSTSP-DTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 212 ~L~rl~-----e~~~~~~l~vI~Is~~~~-~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.+--+. |..+-+.-.+|+|++... +.+-..+...-...|.++-.+++|-.+||+
T Consensus 514 l~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq 573 (953)
T KOG0736|consen 514 LLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQ 573 (953)
T ss_pred HHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHH
Confidence 222222 222223345666655432 222222222223588999999999999995
No 186
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=7.3e-05 Score=77.00 Aligned_cols=158 Identities=11% Similarity=0.034 Sum_probs=93.6
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC-CHHHHHHHHHHHHhhcc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY-SPRILFESILNQLLLHK 135 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~-s~~~l~~~Il~~L~~~~ 135 (537)
+.+.|-+..++.|...+.. ...++ +++|||+|+|||++++.+.+.+- |.... +-..++ ...
T Consensus 4 ~~i~g~~~~~~~l~~~~~~--~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~-------c~~~~~~h~D~~--------~~~ 66 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIK--NRFSHAHIIVGEDGIGKSLLAKEIALKIL-------GKSQQREYVDII--------EFK 66 (313)
T ss_pred hhccCcHHHHHHHHHHHHc--CCCCceEEeECCCCCCHHHHHHHHHHHHc-------CCCCCCCCCCeE--------Eec
Confidence 3466778888889888865 23445 57999999999999999998763 21100 000000 000
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
+ .+|. .-+ ++.++.+++.+... ...++.-|+|||++|.+.. .--.+|+.
T Consensus 67 ~--~~~~-----~i~----v~~ir~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~-----~a~naLLK 115 (313)
T PRK05564 67 P--INKK-----SIG----VDDIRNIIEEVNKK---------------PYEGDKKVIIIYNSEKMTE-----QAQNAFLK 115 (313)
T ss_pred c--ccCC-----CCC----HHHHHHHHHHHhcC---------------cccCCceEEEEechhhcCH-----HHHHHHHH
Confidence 0 0010 011 22344444432110 1123445778899998854 22346667
Q ss_pred hhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 216 LSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 216 l~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.-|-.+ +++.+|++++. ++.+++.+.++ ...+.|++.+.+++.+.|..
T Consensus 116 ~LEepp-~~t~~il~~~~-~~~ll~TI~SR-c~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 116 TIEEPP-KGVFIILLCEN-LEQILDTIKSR-CQIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred HhcCCC-CCeEEEEEeCC-hHhCcHHHHhh-ceeeeCCCcCHHHHHHHHHH
Confidence 666543 56888888865 56665433322 25899999999999999953
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.01 E-value=2.3e-05 Score=72.79 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEE-EeccccCCHHHHHHHHHHHHhhccccccCC
Q 009352 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVY-TSCLSCYSPRILFESILNQLLLHKKNAFNG 141 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~~-inc~~~~s~~~l~~~Il~~L~~~~~~~~~g 141 (537)
++.++.|..++.. ...++ ++++||+|+||++++..+++.+-..-.. ..|..|.+-+.+-. +..++- .-
T Consensus 3 ~~~~~~L~~~~~~--~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~-------~~~~d~-~~ 72 (162)
T PF13177_consen 3 EEIIELLKNLIKS--GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEE-------GNHPDF-II 72 (162)
T ss_dssp HHHHHHHHHHHHC--TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHT-------T-CTTE-EE
T ss_pred HHHHHHHHHHHHc--CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHh-------ccCcce-EE
Confidence 5667778877765 23455 7999999999999999999886421111 15555554332211 111110 00
Q ss_pred CCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcC
Q 009352 142 YSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK 221 (537)
Q Consensus 142 ~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~ 221 (537)
+.....-.++ -++.++.+.+.+.. . ...+..-|+|||++|.|.. +--.+|++..|-.+
T Consensus 73 ~~~~~~~~~i--~i~~ir~i~~~~~~--------~-------~~~~~~KviiI~~ad~l~~-----~a~NaLLK~LEepp 130 (162)
T PF13177_consen 73 IKPDKKKKSI--KIDQIREIIEFLSL--------S-------PSEGKYKVIIIDEADKLTE-----EAQNALLKTLEEPP 130 (162)
T ss_dssp EETTTSSSSB--SHHHHHHHHHHCTS--------S--------TTSSSEEEEEETGGGS-H-----HHHHHHHHHHHSTT
T ss_pred Eecccccchh--hHHHHHHHHHHHHH--------H-------HhcCCceEEEeehHhhhhH-----HHHHHHHHHhcCCC
Confidence 0000000011 12334434332110 0 1123445788899999964 44568888888754
Q ss_pred CCcEEEEEEeCCC---ccccccCCCCCCCceeecCCCC
Q 009352 222 MPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECT 256 (537)
Q Consensus 222 ~~~l~vI~Is~~~---~~~f~~r~~~~~p~~I~FppYt 256 (537)
.++.+|++++.+ .+.+.+|. ..|+|+|.+
T Consensus 131 -~~~~fiL~t~~~~~il~TI~SRc-----~~i~~~~ls 162 (162)
T PF13177_consen 131 -ENTYFILITNNPSKILPTIRSRC-----QVIRFRPLS 162 (162)
T ss_dssp -TTEEEEEEES-GGGS-HHHHTTS-----EEEEE----
T ss_pred -CCEEEEEEECChHHChHHHHhhc-----eEEecCCCC
Confidence 578889988873 23444554 578887653
No 188
>PRK06620 hypothetical protein; Validated
Probab=97.99 E-value=2.3e-05 Score=76.25 Aligned_cols=100 Identities=9% Similarity=0.226 Sum_probs=53.6
Q ss_pred EEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcccc-----ccCCCCCCCceeecCCCCHHHHHHHH
Q 009352 190 IYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY-----HSNTGYVAPIHVYFPECTEDDLRQIF 264 (537)
Q Consensus 190 ~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f-----~~r~~~~~p~~I~FppYt~~el~~IL 264 (537)
-+|+|||+|.+.+ ..++..+-++.|. .-.+|+.++..|..+ .+|.. .-..+.+.+++.+++.+++
T Consensus 87 d~lliDdi~~~~~----~~lf~l~N~~~e~----g~~ilits~~~p~~l~l~~L~SRl~--~gl~~~l~~pd~~~~~~~l 156 (214)
T PRK06620 87 NAFIIEDIENWQE----PALLHIFNIINEK----QKYLLLTSSDKSRNFTLPDLSSRIK--SVLSILLNSPDDELIKILI 156 (214)
T ss_pred CEEEEeccccchH----HHHHHHHHHHHhc----CCEEEEEcCCCccccchHHHHHHHh--CCceEeeCCCCHHHHHHHH
Confidence 3678899996622 2333222233332 334555555554332 23332 1247899999999999998
Q ss_pred HhcCCCh--hhhhHHHHHHhhccccccCCHHHHHHHHHHh
Q 009352 265 MRNQANQ--KLYSSFLDIVLRPFCRITKRVDELSTAFSLL 302 (537)
Q Consensus 265 ~~~r~~~--~l~~~~~~~il~~~~~~~r~l~~L~~~~~~l 302 (537)
.+..... .+-+..++-++.. ..+|+..+..+...+
T Consensus 157 ~k~~~~~~l~l~~ev~~~L~~~---~~~d~r~l~~~l~~l 193 (214)
T PRK06620 157 FKHFSISSVTISRQIIDFLLVN---LPREYSKIIEILENI 193 (214)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH---ccCCHHHHHHHHHHH
Confidence 6432211 1223333333333 345777777766665
No 189
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.98 E-value=7.6e-05 Score=79.65 Aligned_cols=80 Identities=28% Similarity=0.472 Sum_probs=62.9
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC---CeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~---~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
...++|+...+.+|...+........+|+|+|.+||||-.+++++=+...+ +|+.|||..+. ..++++ .|.|
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip--~~l~ES---ELFG 214 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP--ENLLES---ELFG 214 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC--HHHHHH---Hhhc
Confidence 357899999999999999887666678999999999999999998877654 99999997654 445443 4677
Q ss_pred ccccccCC
Q 009352 134 HKKNAFNG 141 (537)
Q Consensus 134 ~~~~~~~g 141 (537)
+.+.+..|
T Consensus 215 hekGAFTG 222 (464)
T COG2204 215 HEKGAFTG 222 (464)
T ss_pred ccccCcCC
Confidence 76654444
No 190
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.98 E-value=9.6e-05 Score=77.78 Aligned_cols=163 Identities=18% Similarity=0.287 Sum_probs=95.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC---C--CeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhH
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS---R--PFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~---~--~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (537)
..+++||||+.|.|||.+++++..+.. . +++|+ +...++...+..+... .+.+|
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~------~se~f~~~~v~a~~~~---------------~~~~F 170 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL------TSEDFTNDFVKALRDN---------------EMEKF 170 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec------cHHHHHHHHHHHHHhh---------------hHHHH
Confidence 367899999999999999999997653 2 45554 3455556566555321 11121
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCC-ChHHHHHhhhhhcCCCcEEEEEEeCC
Q 009352 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS-SILPFLFGLSDILKMPEVGMIFISST 233 (537)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~-~lL~~L~rl~e~~~~~~l~vI~Is~~ 233 (537)
-+. + ..=+++||+++.+...+..+ +++..|-++.+. +-.+|+.|..
T Consensus 171 k~~----------------------------y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~----~kqIvltsdr 217 (408)
T COG0593 171 KEK----------------------------Y-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN----GKQIVLTSDR 217 (408)
T ss_pred HHh----------------------------h-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc----CCEEEEEcCC
Confidence 111 1 22377889999997532212 233333333332 2266776666
Q ss_pred Ccc-------ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCC--hhhhhHHHHHHhhccc-cccCCHHHHHHHHHHh
Q 009352 234 SPD-------TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQAN--QKLYSSFLDIVLRPFC-RITKRVDELSTAFSLL 302 (537)
Q Consensus 234 ~~~-------~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~--~~l~~~~~~~il~~~~-~~~r~l~~L~~~~~~l 302 (537)
+|. ++.+|... ...+...|++.+....||.+.... ..+- +++++-+. +..+++.+|..+...+
T Consensus 218 ~P~~l~~~~~rL~SR~~~--Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~----~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 218 PPKELNGLEDRLRSRLEW--GLVVEIEPPDDETRLAILRKKAEDRGIEIP----DEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred CchhhccccHHHHHHHhc--eeEEeeCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 552 33344332 257889999999999999752211 1122 33333332 3557788888888777
No 191
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.98 E-value=6.9e-05 Score=82.24 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=49.9
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh--------c---CCCeEEEeccccC
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--------L---SRPFVYTSCLSCY 118 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~--------l---~~~~~~inc~~~~ 118 (537)
+.+.|....+.++...+........+|+|+|++||||+.+++.+-+. . +.+++.|||....
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 45788888888888887765555678999999999999999999876 2 2489999998754
No 192
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.0001 Score=75.82 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCC
Q 009352 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGY 142 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~ 142 (537)
+...++|...+.. ...++ ++++||+|+||++++..+++.+-..-. ..|..|.+-+. + . .+..|+- .-+
T Consensus 10 ~~~~~~l~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~-~~~~~c~~c~~-~----~--~g~HPD~-~~i 78 (319)
T PRK08769 10 QRAYDQTVAALDA--GRLGHGLLICGPEGLGKRAVALALAEHVLASGP-DPAAAQRTRQL-I----A--AGTHPDL-QLV 78 (319)
T ss_pred HHHHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC-CCCCcchHHHH-H----h--cCCCCCE-EEE
Confidence 4556777777754 23455 889999999999999999988642110 11222322111 1 0 1111110 000
Q ss_pred --CccccCC--CchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhh
Q 009352 143 --SSAKRCE--KPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSD 218 (537)
Q Consensus 143 --~~~~r~~--~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e 218 (537)
...+..+ +..--++.++++.+.+.. ....++.-|+|||++|.+.. .--++|++.-|
T Consensus 79 ~~~p~~~~~k~~~~I~idqIR~l~~~~~~---------------~p~~g~~kV~iI~~ae~m~~-----~AaNaLLKtLE 138 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQVREISQKLAL---------------TPQYGIAQVVIVDPADAINR-----AACNALLKTLE 138 (319)
T ss_pred ecCCCcccccccccccHHHHHHHHHHHhh---------------CcccCCcEEEEeccHhhhCH-----HHHHHHHHHhh
Confidence 0000000 011123445544443211 01123456888899999964 22357778777
Q ss_pred hcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 219 ILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 219 ~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
-.+ +++.+|++++. ++++++.+.+ ....|.|++.+.+++.+.|..
T Consensus 139 EPp-~~~~fiL~~~~-~~~lLpTIrS-RCq~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 139 EPS-PGRYLWLISAQ-PARLPATIRS-RCQRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CCC-CCCeEEEEECC-hhhCchHHHh-hheEeeCCCcCHHHHHHHHHH
Confidence 643 57788888876 3444433222 126899999999999999964
No 193
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.2e-05 Score=76.70 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=28.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
+.|++|||||||||.++++|+.+-+..|.-|+.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSS 199 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 199 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeeh
Confidence 359999999999999999999988877777764
No 194
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00014 Score=74.85 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCe-EEEeccccCCHHHHHHHHHHHHhhccccccCC
Q 009352 64 RVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPF-VYTSCLSCYSPRILFESILNQLLLHKKNAFNG 141 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~-~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g 141 (537)
....++|...+.. ...+ .++++||.|+||++++..+.+.+-..- .-..|..|.+=+.+- .+..|+-. -
T Consensus 9 ~~~~~~l~~~~~~--~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~-------~g~HPD~~-~ 78 (319)
T PRK06090 9 VPVWQNWKAGLDA--GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQ-------SGNHPDLH-V 78 (319)
T ss_pred HHHHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHH-------cCCCCCEE-E
Confidence 4556677777654 2334 489999999999999999998864211 112477775433221 12222210 0
Q ss_pred CCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcC
Q 009352 142 YSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK 221 (537)
Q Consensus 142 ~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~ 221 (537)
+...+....+ -++.++.+.+.+... ...++.-|+|||++|++.. .--++|++.-|--+
T Consensus 79 i~p~~~~~~I--~vdqiR~l~~~~~~~---------------~~~~~~kV~iI~~ae~m~~-----~AaNaLLKtLEEPp 136 (319)
T PRK06090 79 IKPEKEGKSI--TVEQIRQCNRLAQES---------------SQLNGYRLFVIEPADAMNE-----SASNALLKTLEEPA 136 (319)
T ss_pred EecCcCCCcC--CHHHHHHHHHHHhhC---------------cccCCceEEEecchhhhCH-----HHHHHHHHHhcCCC
Confidence 0000000111 123344433221110 1123445788899999964 22356777777643
Q ss_pred CCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 222 MPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 222 ~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
+++.+|++++. ++++++.+.++ ...+.|++.+.+++.+.|...
T Consensus 137 -~~t~fiL~t~~-~~~lLpTI~SR-Cq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 137 -PNCLFLLVTHN-QKRLLPTIVSR-CQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred -CCeEEEEEECC-hhhChHHHHhc-ceeEeCCCCCHHHHHHHHHHc
Confidence 67888888877 44444333221 268999999999999999643
No 195
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=4.9e-05 Score=78.85 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=88.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe---EEEeccccCCHHHHHHHHHHHHhhcccccc----CCCC------------
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF---VYTSCLSCYSPRILFESILNQLLLHKKNAF----NGYS------------ 143 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~---~~inc~~~~s~~~l~~~Il~~L~~~~~~~~----~g~~------------ 143 (537)
.++++||+|+||+++++.+.+.+.... ..-.|..|.+-+.+-. +..|+-. .+..
T Consensus 23 a~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~-------~~HPD~~~i~p~~~~~~~~~~~~~~~~ 95 (342)
T PRK06964 23 ALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQ-------GNHPDYRIVRPEALAAEAPGAADEAKE 95 (342)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-------CCCCCEEEEeccccccccccccccccc
Confidence 488999999999999999999875321 1235777754332211 1111100 0000
Q ss_pred -----ccccCCCch--hHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhh
Q 009352 144 -----SAKRCEKPS--DFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (537)
Q Consensus 144 -----~~~r~~~~~--~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl 216 (537)
..++....+ =.++.++.+.+.+.. ....++.-|+|||++|++.. +--++|++.
T Consensus 96 ~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~---------------~~~~~~~kV~iI~~ae~m~~-----~AaNaLLKt 155 (342)
T PRK06964 96 ADADEGGKKTKAPSKEIKIEQVRALLDFCGV---------------GTHRGGARVVVLYPAEALNV-----AAANALLKT 155 (342)
T ss_pred chhhcccccccccccccCHHHHHHHHHHhcc---------------CCccCCceEEEEechhhcCH-----HHHHHHHHH
Confidence 000011111 124455555443211 01123445788899999964 223567777
Q ss_pred hhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 217 SDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 217 ~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
-|--+ +++.+|++++. ++.+++.+.++ ...|+|++.+.+++.+.|...
T Consensus 156 LEEPp-~~t~fiL~t~~-~~~LLpTI~SR-cq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 156 LEEPP-PGTVFLLVSAR-IDRLLPTILSR-CRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred hcCCC-cCcEEEEEECC-hhhCcHHHHhc-CEEEEecCCCHHHHHHHHHHc
Confidence 67543 57888888877 44554433221 268999999999999999643
No 196
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=8.5e-05 Score=83.53 Aligned_cols=121 Identities=13% Similarity=0.264 Sum_probs=80.2
Q ss_pred HHhhcCCChHHHHHHHHHHHcccCC-------CCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHH
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLNS-------SMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~~-------~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~ 124 (537)
.+.+++.|=++.+..+...+...-. |..+.++.||+|+|||-+++++.+.|. ...+.+|..++....
T Consensus 488 ~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH--- 564 (786)
T COG0542 488 RLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH--- 564 (786)
T ss_pred HHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH---
Confidence 4557889999999999998865321 223467899999999999999999987 578888887765432
Q ss_pred HHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
-+..|.|. |+.+-||.... .|.+ .++ .+...||+|||+|+-
T Consensus 565 --sVSrLIGa-PPGYVGyeeGG--------------~LTE---aVR---------------r~PySViLlDEIEKA---- 605 (786)
T COG0542 565 --SVSRLIGA-PPGYVGYEEGG--------------QLTE---AVR---------------RKPYSVILLDEIEKA---- 605 (786)
T ss_pred --HHHHHhCC-CCCCceecccc--------------chhH---hhh---------------cCCCeEEEechhhhc----
Confidence 34556564 33334443211 2211 111 234568999999954
Q ss_pred CCCChHHHHHhhhh
Q 009352 205 KSSSILPFLFGLSD 218 (537)
Q Consensus 205 ~~~~lL~~L~rl~e 218 (537)
.++++..|+...+
T Consensus 606 -HpdV~nilLQVlD 618 (786)
T COG0542 606 -HPDVFNLLLQVLD 618 (786)
T ss_pred -CHHHHHHHHHHhc
Confidence 3678877776543
No 197
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.7e-05 Score=74.96 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=92.0
Q ss_pred hcCCChHHHHHHHHHHHcccCC------C---CCC--eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNS------S---MPP--LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~------~---~~~--l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+-|=-.|+.+|...+.-.+- + .+| +.||||||||||.+++.++..++..++.+...+..
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv-------- 203 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV-------- 203 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh--------
Confidence 4566777888888887644321 1 123 78999999999999999999999988888653321
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
..-.++ + . .++...+.+.+ ...+++|++||+|.+.-+.
T Consensus 204 --~kyiGE---------------s----a----RlIRemf~yA~---------------~~~pciifmdeiDAigGRr~s 243 (388)
T KOG0651|consen 204 --DKYIGE---------------S----A----RLIRDMFRYAR---------------EVIPCIIFMDEIDAIGGRRFS 243 (388)
T ss_pred --hhhccc---------------H----H----HHHHHHHHHHh---------------hhCceEEeehhhhhhccEEec
Confidence 111111 1 1 13333333322 2346999999999986431
Q ss_pred ----CCCChHHHHHhhhhhcC----CCcEEEEEEeCCCcccc---ccCCCCCCCceeecCCCCHHHHHHHH
Q 009352 205 ----KSSSILPFLFGLSDILK----MPEVGMIFISSTSPDTY---HSNTGYVAPIHVYFPECTEDDLRQIF 264 (537)
Q Consensus 205 ----~~~~lL~~L~rl~e~~~----~~~l~vI~Is~~~~~~f---~~r~~~~~p~~I~FppYt~~el~~IL 264 (537)
+.+++--.|+.|.+... ...+.+|..+|.+ +.+ +-|.|.. ...++.|-.+..--..|+
T Consensus 244 e~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrp-dtLdpaLlRpGRl-drk~~iPlpne~~r~~I~ 312 (388)
T KOG0651|consen 244 EGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRP-DTLDPALLRPGRL-DRKVEIPLPNEQARLGIL 312 (388)
T ss_pred cccchhHHHHHHHHHHHHhhccchhcccccEEEecCCc-cccchhhcCCccc-cceeccCCcchhhceeeE
Confidence 11233334444433221 3468899988874 333 2344422 235666655554444455
No 198
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.91 E-value=2.1e-05 Score=73.74 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC----CeEEEeccccCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR----PFVYTSCLSCYS 119 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~----~~~~inc~~~~s 119 (537)
..++++.||+|+|||.+++.+.+.+.. +++.+||.++..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 346899999999999999999999985 899999988766
No 199
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=9.9e-05 Score=83.02 Aligned_cols=157 Identities=20% Similarity=0.206 Sum_probs=93.9
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
-..||++||+++...|... .-.|-++.|.||+|||++|.-++...- +|-.--++ +.++-. +..|.
T Consensus 171 PvIGRd~EI~r~iqIL~RR--~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~-~i~sLD------~g~Lv--- 238 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRR--TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDK-RIYSLD------LGSLV--- 238 (786)
T ss_pred CCcChHHHHHHHHHHHhcc--CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCC-EEEEec------HHHHh---
Confidence 4799999999999998763 234678889999999999999997642 11110010 000000 11111
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--------CCC
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--------KSS 207 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--------~~~ 207 (537)
.|. ..|+ +|-++|+.+++.+-+ .+ .++|+|||++.|..-. +++
T Consensus 239 ----AGa--kyRG----eFEeRlk~vl~ev~~------------------~~-~vILFIDEiHtiVGAG~~~G~a~DAaN 289 (786)
T COG0542 239 ----AGA--KYRG----EFEERLKAVLKEVEK------------------SK-NVILFIDEIHTIVGAGATEGGAMDAAN 289 (786)
T ss_pred ----ccc--cccC----cHHHHHHHHHHHHhc------------------CC-CeEEEEechhhhcCCCcccccccchhh
Confidence 111 1233 588888888876522 23 7999999999997421 111
Q ss_pred ChHHHHHhhhhhcCCCcEEEEEEeCCCccccc---c--CCCCCCCceeecCCCCHHHHHHHHH
Q 009352 208 SILPFLFGLSDILKMPEVGMIFISSTSPDTYH---S--NTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 208 ~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~---~--r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
-+-|+|.| -.+.+|..++ ++.|. . ..-.+....|....++.++...||.
T Consensus 290 iLKPaLAR-------GeL~~IGATT--~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILr 343 (786)
T COG0542 290 LLKPALAR-------GELRCIGATT--LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILR 343 (786)
T ss_pred hhHHHHhc-------CCeEEEEecc--HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHH
Confidence 11233322 2366666655 33331 1 1112233689999999999999994
No 200
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=9e-05 Score=81.20 Aligned_cols=157 Identities=19% Similarity=0.201 Sum_probs=93.0
Q ss_pred cCCChHHHHHHHHHHH---cccCC------CCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009352 59 RFPGRRVQILELLRLL---GTLNS------SMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll---~~~~~------~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il 128 (537)
..-|.|+..++|.+++ ..... ..| -++++||||||||.++++++-+.++++..++..+. +
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~F----------V 220 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF----------V 220 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhh----------h
Confidence 4567777666655554 33211 123 38999999999999999999999999999875432 1
Q ss_pred HHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC---
Q 009352 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK--- 205 (537)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~--- 205 (537)
.... |++. .+.|++++.. .+.-+++|+|||+|.+....+
T Consensus 221 emfV--------GvGA-----------sRVRdLF~qA-------------------kk~aP~IIFIDEiDAvGr~Rg~g~ 262 (596)
T COG0465 221 EMFV--------GVGA-----------SRVRDLFEQA-------------------KKNAPCIIFIDEIDAVGRQRGAGL 262 (596)
T ss_pred hhhc--------CCCc-----------HHHHHHHHHh-------------------hccCCCeEEEehhhhcccccCCCC
Confidence 1221 2221 1345565531 133568999999999975331
Q ss_pred --CCC----hHHHHHhhhhhcCCCcEEEEEEeCCCc-c---ccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 206 --SSS----ILPFLFGLSDILKMPEVGMIFISSTSP-D---TYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 206 --~~~----lL~~L~rl~e~~~~~~l~vI~Is~~~~-~---~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
+++ -|..|+-=.+=.. .|-.||+|+.+.+ | .-+.|.|.+. ..|..+.++-..-.+||.
T Consensus 263 GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpdVlD~ALlRpgRFD-RqI~V~~PDi~gRe~Ilk 330 (596)
T COG0465 263 GGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPDVLDPALLRPGRFD-RQILVELPDIKGREQILK 330 (596)
T ss_pred CCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCcccchHhhcCCCCcc-eeeecCCcchhhHHHHHH
Confidence 111 2333332222222 3455666655543 2 3334555332 478888888777888885
No 201
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=6.8e-05 Score=77.77 Aligned_cols=168 Identities=14% Similarity=0.098 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCCHHHHHHHHHHHHhhccccccC
Q 009352 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYSPRILFESILNQLLLHKKNAFN 140 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~ 140 (537)
+...++|...+.. +..++ ++++||+|+||++++..+.+.+-. +-.--.|..|.+=+.+- .+..|+-.
T Consensus 8 ~~~~~~l~~~~~~--~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~-------~g~HPD~~- 77 (334)
T PRK07993 8 RPDYEQLVGSYQA--GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQ-------AGTHPDYY- 77 (334)
T ss_pred hHHHHHHHHHHHc--CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH-------cCCCCCEE-
Confidence 4566777777755 23344 789999999999999999988742 11112577776533321 12222210
Q ss_pred CCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhc
Q 009352 141 GYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDIL 220 (537)
Q Consensus 141 g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~ 220 (537)
-+. +.... ..=-++..+.+.+.+... ...+..-|+|||++|++.. +--++|++.-|--
T Consensus 78 ~i~-p~~~~-~~I~idqiR~l~~~~~~~---------------~~~g~~kV~iI~~ae~m~~-----~AaNaLLKtLEEP 135 (334)
T PRK07993 78 TLT-PEKGK-SSLGVDAVREVTEKLYEH---------------ARLGGAKVVWLPDAALLTD-----AAANALLKTLEEP 135 (334)
T ss_pred EEe-ccccc-ccCCHHHHHHHHHHHhhc---------------cccCCceEEEEcchHhhCH-----HHHHHHHHHhcCC
Confidence 000 00000 001134455554433211 1134456888899999964 2235677877764
Q ss_pred CCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 221 KMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 221 ~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+ ++..+|++++. ++++++.+-|+ ...+.|++.+.+++.+.|..
T Consensus 136 p-~~t~fiL~t~~-~~~lLpTIrSR-Cq~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 136 P-ENTWFFLACRE-PARLLATLRSR-CRLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred C-CCeEEEEEECC-hhhChHHHHhc-cccccCCCCCHHHHHHHHHH
Confidence 3 56778888876 44554332221 14789999999999999964
No 202
>PRK08116 hypothetical protein; Validated
Probab=97.87 E-value=8.6e-05 Score=74.71 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=27.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc 114 (537)
.+++|+|++|||||.++.++++++ +.+++|++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 359999999999999999999876 456777764
No 203
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.84 E-value=9.5e-05 Score=67.29 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=29.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~ 118 (537)
++|+|++|+|||+++..++..+ +.+++|+++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 6799999999999999998876 3578888876544
No 204
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.82 E-value=0.00012 Score=74.92 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHcccCC--CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009352 62 GRRVQILELLRLLGTLNS--SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~--~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc 114 (537)
.|...+.....++..... ...+++|||++|||||.++.++++++ +..+.|+.+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 454444544555543222 24579999999999999999999887 456666654
No 205
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.82 E-value=2.3e-05 Score=70.65 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
|+...++++...+........+|+|+|++||||+.+++.+-....
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 444566666666655444467899999999999999998887655
No 206
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00022 Score=81.98 Aligned_cols=200 Identities=17% Similarity=0.136 Sum_probs=111.6
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+-|=+..|.+|.+..-.. +.+.+-+++|||||||||++++++..++....-.| .+|
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~ki---------sff-- 333 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKI---------SFF-- 333 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccccc---------chh--
Confidence 35667777787777753221 11223499999999999999999998764211111 111
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
..... . .-..|+-+--+.|+-+++.. ....+.||++||+|-|....
T Consensus 334 ----mrkga-------D--~lskwvgEaERqlrllFeeA-------------------~k~qPSIIffdeIdGlapvrSs 381 (1080)
T KOG0732|consen 334 ----MRKGA-------D--CLSKWVGEAERQLRLLFEEA-------------------QKTQPSIIFFDEIDGLAPVRSS 381 (1080)
T ss_pred ----hhcCc-------h--hhccccCcHHHHHHHHHHHH-------------------hccCceEEeccccccccccccc
Confidence 10000 0 00112223334566566542 13568899999999664321
Q ss_pred ----CCCChHHHHHhhhhhcCCCcEEEEEEeCCC-c---cccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--Chhhh
Q 009352 205 ----KSSSILPFLFGLSDILKMPEVGMIFISSTS-P---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQKLY 274 (537)
Q Consensus 205 ----~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~-~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~l~ 274 (537)
....+...|+.|.+=++ ..-.||+|+.+. + +.-+.|.|.+. ..++||-.+.+.-.+||..+.. ....-
T Consensus 382 kqEqih~SIvSTLLaLmdGld-sRgqVvvigATnRpda~dpaLRRPgrfd-ref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 382 KQEQIHASIVSTLLALMDGLD-SRGQVVVIGATNRPDAIDPALRRPGRFD-REFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred hHHHhhhhHHHHHHHhccCCC-CCCceEEEcccCCccccchhhcCCcccc-eeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 12456777777766543 123344444432 2 33455555332 4899999988888888854321 12233
Q ss_pred hHHHHHHhhccccccC-CHHHHHHHHHHh
Q 009352 275 SSFLDIVLRPFCRITK-RVDELSTAFSLL 302 (537)
Q Consensus 275 ~~~~~~il~~~~~~~r-~l~~L~~~~~~l 302 (537)
..++..+.....++|+ |+..|+..++-.
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~ 488 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALI 488 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhh
Confidence 3445555556666776 665555544433
No 207
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.81 E-value=0.00016 Score=79.72 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=48.5
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
+.+.|....+.++...+........+|+|+|.+||||+.+++++-.... .+++.|||....
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4688888888888877765545567899999999999999999765433 489999998754
No 208
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.79 E-value=7.9e-05 Score=75.13 Aligned_cols=170 Identities=19% Similarity=0.276 Sum_probs=84.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC-C--eEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR-P--FVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~-~--~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (537)
..++++.||+|||||++++.+++.+.. . ...++|....++..+ +.++++-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~-q~~ie~~-------------------------- 85 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQL-QKIIESK-------------------------- 85 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHH-HHCCCTT--------------------------
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHH-HHHHhhc--------------------------
Confidence 668999999999999999999988764 3 234555444333322 1111000
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC-CCCChHHHHHhhhh---hcC--------CCcE
Q 009352 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-KSSSILPFLFGLSD---ILK--------MPEV 225 (537)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-~~~~lL~~L~rl~e---~~~--------~~~l 225 (537)
.++.+++.+.+ +.++.+|++||++..-.... +.+..+..|..+.+ +.+ +.++
T Consensus 86 ---------------l~k~~~~~~gP-~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i 149 (272)
T PF12775_consen 86 ---------------LEKRRGRVYGP-PGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDI 149 (272)
T ss_dssp ---------------ECECTTEEEEE-ESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSE
T ss_pred ---------------EEcCCCCCCCC-CCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeee
Confidence 00111112222 35678999999999665321 22333333322322 221 2345
Q ss_pred EEEEEeCCC------ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhh--ccccccC-CHHHHH
Q 009352 226 GMIFISSTS------PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLR--PFCRITK-RVDELS 296 (537)
Q Consensus 226 ~vI~Is~~~------~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~--~~~~~~r-~l~~L~ 296 (537)
.+|...+.. +.+|.+.. ..+.++.++.+++..|.. .++...+. .|..... -...|.
T Consensus 150 ~~vaa~~p~~Gr~~is~R~~r~f-----~i~~~~~p~~~sl~~If~----------~il~~~l~~~~f~~~v~~~~~~lv 214 (272)
T PF12775_consen 150 QFVAAMNPTGGRNPISPRFLRHF-----NILNIPYPSDESLNTIFS----------SILQSHLKNGGFPEDVQKLADKLV 214 (272)
T ss_dssp EEEEEESSTTT--SHHHHHHTTE-----EEEE----TCCHHHHHHH----------HHHHHHTCHTTSSGGGCCCHHHHH
T ss_pred EEEEecCCCCCCCCCChHHhhhe-----EEEEecCCChHHHHHHHH----------HHHhhhcccCCCChHHHHHHHHHH
Confidence 555544421 12333322 477889999999999984 12222222 2222222 256666
Q ss_pred HHHHHhhhhhhh
Q 009352 297 TAFSLLFKRYCE 308 (537)
Q Consensus 297 ~~~~~lw~~y~~ 308 (537)
.+...+|....+
T Consensus 215 ~ati~ly~~i~~ 226 (272)
T PF12775_consen 215 QATIELYQKIRQ 226 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc
Confidence 666677666554
No 209
>PRK08181 transposase; Validated
Probab=97.77 E-value=0.00014 Score=73.08 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=27.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc 114 (537)
..+++|+||+|||||.++.++..++ +..+.|+++
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 5689999999999999999998654 445666653
No 210
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.77 E-value=0.00032 Score=79.99 Aligned_cols=60 Identities=20% Similarity=0.327 Sum_probs=47.5
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
.+.|+...+..+...+........+|+|+|++|||||.+++.+-.... .+++.+||....
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 439 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC
Confidence 467777778777776665444556899999999999999999987653 589999998653
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.77 E-value=5.5e-05 Score=85.51 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=50.2
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
+.+.|+...+.++...+........+|+|+|++||||+++++++-+... .+++.|||....
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~ 388 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP 388 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC
Confidence 4567888888888887776555567899999999999999999987754 489999998764
No 212
>PRK06526 transposase; Provisional
Probab=97.76 E-value=3.5e-05 Score=76.84 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
...+++|+||||||||.++.++..++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 45689999999999999999998764
No 213
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00015 Score=79.46 Aligned_cols=135 Identities=15% Similarity=0.228 Sum_probs=75.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC----eEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRP----FVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~----~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (537)
++|+|+||+|+|||.+++++++++..+ +.+++|.+..-.+ +++|- ..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQ---------------------------k~ 482 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQ---------------------------KF 482 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHH---------------------------HH
Confidence 579999999999999999999998742 3456775533211 22211 12
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc---CCCC-----ChHHHHH-hhh-hhcCC-CcEE
Q 009352 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW---DKSS-----SILPFLF-GLS-DILKM-PEVG 226 (537)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~---d~~~-----~lL~~L~-rl~-e~~~~-~~l~ 226 (537)
|+.++.... ...|-|||||++|.|..- ++++ +.+..++ .+. +.... ..+.
T Consensus 483 l~~vfse~~-------------------~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia 543 (952)
T KOG0735|consen 483 LNNVFSEAL-------------------WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIA 543 (952)
T ss_pred HHHHHHHHH-------------------hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEE
Confidence 222332211 124679999999999751 1122 2232222 221 22211 1234
Q ss_pred EEEEeCCCccccccCCCC--CCCceeecCCCCHHHHHHHHH
Q 009352 227 MIFISSTSPDTYHSNTGY--VAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 227 vI~Is~~~~~~f~~r~~~--~~p~~I~FppYt~~el~~IL~ 265 (537)
+|+.++.. ..+-++..+ ....++++|+....+-.+||.
T Consensus 544 ~Iat~qe~-qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~ 583 (952)
T KOG0735|consen 544 VIATGQEL-QTLNPLLVSPLLFQIVIALPAPAVTRRKEILT 583 (952)
T ss_pred EEEechhh-hhcChhhcCccceEEEEecCCcchhHHHHHHH
Confidence 45444431 222221111 122588999999999999995
No 214
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.73 E-value=6.4e-05 Score=70.94 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009352 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc 114 (537)
.++.++... .....+.+++++|++|||||.++.+++.++ +..+.|++.
T Consensus 33 ~~~~~l~~~--~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 33 AQIAQLAAL--EFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp -HHHHHHHH---S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred HHHHHHhcC--CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 445555332 122345689999999999999999988764 457777764
No 215
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00032 Score=73.96 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=92.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVRE 160 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~ 160 (537)
...+++.||||||||.++++++-+.+..+..|.+.... +...| +. ..+ ++.
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt----------sK~~G---------------e~-eK~---vra 236 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT----------SKYVG---------------ES-EKL---VRA 236 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh----------hhccC---------------hH-HHH---HHH
Confidence 34589999999999999999999998888877653221 11111 11 111 222
Q ss_pred HHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC------CCCCh-HHHHHhhhh-hc-CCCcEEEEEEe
Q 009352 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD------KSSSI-LPFLFGLSD-IL-KMPEVGMIFIS 231 (537)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d------~~~~l-L~~L~rl~e-~~-~~~~l~vI~Is 231 (537)
++ .+.. ...+-||++||+|.+.... ....+ ...|..+.- .+ +.+++-||..+
T Consensus 237 lf-~vAr------------------~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 237 LF-KVAR------------------SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred HH-HHHH------------------hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 22 1111 3357789999999997421 11111 122222211 11 12345666667
Q ss_pred CCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHh---cCCChhhhhHHHHHHhhccccccC-CHHHHHHHH
Q 009352 232 STSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR---NQANQKLYSSFLDIVLRPFCRITK-RVDELSTAF 299 (537)
Q Consensus 232 ~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~---~r~~~~l~~~~~~~il~~~~~~~r-~l~~L~~~~ 299 (537)
|.+| +.+..|.. -.+++|..+.+.-..|+.. .. ...+-..-+..++++-.++.. |+..|+.-+
T Consensus 298 N~P~e~Dea~~Rrf~----kr~yiplPd~etr~~~~~~ll~~~-~~~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 298 NRPWELDEAARRRFV----KRLYIPLPDYETRSLLWKQLLKEQ-PNGLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred CCchHHHHHHHHHhh----ceeeecCCCHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 6665 33443332 3677777777776666532 12 234555556667776666664 676665544
No 216
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.69 E-value=4.7e-05 Score=68.37 Aligned_cols=42 Identities=29% Similarity=0.492 Sum_probs=37.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~ 124 (537)
+|+|+||||||||++++.+++.++.++..++|..-.+...|+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccce
Confidence 589999999999999999999999999999999888877654
No 217
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.69 E-value=0.0007 Score=74.13 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcccCCC---CCCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 64 RVQILELLRLLGTLNSS---MPPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~---~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
.+-++++...|.....+ ...++++||+||||||+|+.++++++..+..
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 35677777777654332 2358899999999999999999999976553
No 218
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00021 Score=73.81 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe---EEEeccccCCHHHHHHHHHHHHhhcccccc
Q 009352 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF---VYTSCLSCYSPRILFESILNQLLLHKKNAF 139 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~---~~inc~~~~s~~~l~~~Il~~L~~~~~~~~ 139 (537)
+....+|....+ ..++ ++++||+|+|||++++.+.+.+.... -...|.+|.+=+.+- .+..|+-.
T Consensus 7 ~~~w~~l~~~~~----r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~-------~~~HpD~~ 75 (325)
T PRK08699 7 QEQWRQIAEHWE----RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFG-------QGSHPDFY 75 (325)
T ss_pred HHHHHHHHHhcC----CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHh-------cCCCCCEE
Confidence 445556655522 2444 88999999999999999999875211 112577775433221 11112100
Q ss_pred CCCCc----cccCCCc-hhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 140 NGYSS----AKRCEKP-SDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 140 ~g~~~----~~r~~~~-~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
-+.. ...+... .=-++.++++.+.+... ...++.-|+|+|+++.|-. ..-..|+
T Consensus 76 -~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~---------------p~~~~~kV~iiEp~~~Ld~-----~a~naLL 134 (325)
T PRK08699 76 -EITPLSDEPENGRKLLQIKIDAVREIIDNVYLT---------------SVRGGLRVILIHPAESMNL-----QAANSLL 134 (325)
T ss_pred -EEecccccccccccCCCcCHHHHHHHHHHHhhC---------------cccCCceEEEEechhhCCH-----HHHHHHH
Confidence 0000 0001000 00134455554432110 1123344667799999853 2234555
Q ss_pred hhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 215 GLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 215 rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
++.|-.+ .+..+|++++.+ +.+.+.+.+ ....+.|++.+.+++.+.|..
T Consensus 135 k~LEep~-~~~~~Ilvth~~-~~ll~ti~S-Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 135 KVLEEPP-PQVVFLLVSHAA-DKVLPTIKS-RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHhCc-CCCEEEEEeCCh-HhChHHHHH-HhhhhcCCCCCHHHHHHHHHh
Confidence 5555432 467788887764 233221111 125899999999999999964
No 219
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.65 E-value=0.00015 Score=79.56 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=49.8
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
+.+.|....+.++...+........+|+|+|++||||+.+++.+-+... .+++.|||....
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 4578888888888888866545567899999999999999999987643 489999998754
No 220
>PRK06921 hypothetical protein; Provisional
Probab=97.62 E-value=0.0002 Score=71.95 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=27.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc 114 (537)
..+++++|++|||||.++.+++.++ +..++|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4679999999999999999999875 345666663
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.60 E-value=0.00063 Score=65.56 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=36.9
Q ss_pred HcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHH
Q 009352 74 LGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 74 l~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~ 125 (537)
|+.....+..+.|+|+||+|||+++..++.+. +.+++||++.+ .++..+.+
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHH
Confidence 44433334458999999999999999888543 46899999976 56655443
No 222
>PTZ00494 tuzin-like protein; Provisional
Probab=97.57 E-value=0.0034 Score=66.14 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=112.1
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
+..++.|+.|-.-+...|..-....| .++++|..|+|||++.+..++.-+.+.++|+-.. ...-+.+|+.+|.
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg---~EDtLrsVVKALg--- 443 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGG---TEDTLRSVVRALG--- 443 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecC---CcchHHHHHHHhC---
Confidence 46788898888777777765433344 4789999999999999999999999998887543 2334566777773
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
+++..-|-+.-+|+. +.+.+... ...+++.+||+ +|++ + ++ |.|
T Consensus 444 ------V~nve~CGDlLdFI~---ea~~~A~~----------------~~~g~~P~lVl----kLRE--G-ss----L~R 487 (664)
T PTZ00494 444 ------VSNVEVCGDLLGFVE---EAMRGATV----------------KASDGVPFLVM----RLRE--G-SD----LGR 487 (664)
T ss_pred ------CCChhhhccHHHHHH---HHHHHHHH----------------hcCCCCCEEEE----Eecc--C-Cc----HHH
Confidence 233344655555443 33332111 11334445554 4554 2 22 223
Q ss_pred hhh----hcCCCcEEEEEEeCCC-----ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhhccc
Q 009352 216 LSD----ILKMPEVGMIFISSTS-----PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC 286 (537)
Q Consensus 216 l~e----~~~~~~l~vI~Is~~~-----~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~~~~ 286 (537)
.+. +.-...+|.|.+--.. ....++|. -....|+++..|..+..+ +..+..- +..++++..
T Consensus 488 VYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPRL-----DFy~VPnFSr~QAf~Ytq-H~lDal~----l~~FvevvG 557 (664)
T PTZ00494 488 VYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRRL-----DFYCIPPFSRRQAFAYAE-HTLDALD----LVCFVEVVG 557 (664)
T ss_pred HHHHHHHHHccchhheeeeechHhhhchhhccCccc-----eeEecCCcCHHHHHHHHh-cccchhh----hhhhhhhhc
Confidence 221 1101346766552211 11222222 133459999999999984 4443222 233445555
Q ss_pred cccCCHHHHHHHHHH
Q 009352 287 RITKRVDELSTAFSL 301 (537)
Q Consensus 287 ~~~r~l~~L~~~~~~ 301 (537)
..+.|+.||.++..+
T Consensus 558 TnSnDlDEL~AAv~q 572 (664)
T PTZ00494 558 TRSSDVDELCAALRQ 572 (664)
T ss_pred CCcccHHHHHHHHHH
Confidence 566789999876644
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.57 E-value=0.00043 Score=71.58 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=28.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc 114 (537)
...++++||++|||||.++.+++.++ +..++|+++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 34689999999999999999999876 346666654
No 224
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.56 E-value=0.00095 Score=72.36 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecccc
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSC 117 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~ 117 (537)
+.+....+.++...+........+++|.|.+||||+++++.+-.... .+++.+||...
T Consensus 136 lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~ 196 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAI 196 (463)
T ss_pred eeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCC
Confidence 45555555666665544333345799999999999999988877643 48899999875
No 225
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00017 Score=74.93 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=33.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
.+|++-||+|+|||.+++.+++-|.++++..+|.+.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtL 262 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTL 262 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccch
Confidence 579999999999999999999999999999999753
No 226
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.53 E-value=0.00044 Score=72.44 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=73.2
Q ss_pred HHHHHHHcccC--CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCcc
Q 009352 68 LELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSA 145 (537)
Q Consensus 68 ~~L~~ll~~~~--~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~ 145 (537)
..+..+++... .....+||||+.|+|||.++..+.+.+..+. ....++ ..++..+...|...... .
T Consensus 47 ~~~~~~~~~~~~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~---k~R~HF--h~Fm~~vh~~l~~~~~~-----~-- 114 (362)
T PF03969_consen 47 SRLRKLFGRKPPPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR---KRRVHF--HEFMLDVHSRLHQLRGQ-----D-- 114 (362)
T ss_pred HHHHHHhcCCccCCCCceEEEECCCCCchhHHHHHHHHhCCccc---cccccc--cHHHHHHHHHHHHHhCC-----C--
Confidence 44555565321 2234599999999999999999999987421 011111 25556666666543210 0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcE
Q 009352 146 KRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEV 225 (537)
Q Consensus 146 ~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l 225 (537)
+. +..+.+.+. +..-+|.|||++---- +...+|..|+.. +. ..++
T Consensus 115 ---~~-------l~~va~~l~--------------------~~~~lLcfDEF~V~Di--aDAmil~rLf~~--l~-~~gv 159 (362)
T PF03969_consen 115 ---DP-------LPQVADELA--------------------KESRLLCFDEFQVTDI--ADAMILKRLFEA--LF-KRGV 159 (362)
T ss_pred ---cc-------HHHHHHHHH--------------------hcCCEEEEeeeeccch--hHHHHHHHHHHH--HH-HCCC
Confidence 11 222222221 1345899999984321 114555555542 22 2468
Q ss_pred EEEEEeCCCccccccC
Q 009352 226 GMIFISSTSPDTYHSN 241 (537)
Q Consensus 226 ~vI~Is~~~~~~f~~r 241 (537)
.+|..||.+|+.++.+
T Consensus 160 vlVaTSN~~P~~Ly~~ 175 (362)
T PF03969_consen 160 VLVATSNRPPEDLYKN 175 (362)
T ss_pred EEEecCCCChHHHcCC
Confidence 8899999999888753
No 227
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.52 E-value=0.00086 Score=71.84 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcc-----cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeE-EEeccccC
Q 009352 65 VQILELLRLLGT-----LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFV-YTSCLSCY 118 (537)
Q Consensus 65 ~qi~~L~~ll~~-----~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~-~inc~~~~ 118 (537)
+-|.++...|.. ...+...++|+||+||||||+|+.+..+++..+. ++|-+.+.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~ 148 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLK 148 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccc
Confidence 335566666551 1112345899999999999999999999997543 45554443
No 228
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.51 E-value=0.0033 Score=61.13 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=39.0
Q ss_pred hcCCChHHHHHHHHHHHcccCCC--CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 58 SRFPGRRVQILELLRLLGTLNSS--MPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~--~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..+.|-|.|-+.|..-.....++ ..+++++|..|||||++|++++.+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH
Confidence 35778888888887765554443 34699999999999999999998875
No 229
>PRK09183 transposase/IS protein; Provisional
Probab=97.48 E-value=0.00064 Score=68.08 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc 114 (537)
.+.+++|+||+|||||+++.++.... +..+.|+++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 45689999999999999999986553 446666664
No 230
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.43 E-value=0.0027 Score=68.39 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=60.3
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.+.+.|...++.++............+|+|.|.+||||-.+++++=+... -+|+-|||... |..|+++- |.|
T Consensus 244 f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi--Pe~LlESE---LFG 318 (560)
T COG3829 244 FDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI--PETLLESE---LFG 318 (560)
T ss_pred hhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC--CHHHHHHH---HhC
Confidence 35678888888888888776555556799999999999999999887665 38999999754 56777764 455
Q ss_pred ccccccCC
Q 009352 134 HKKNAFNG 141 (537)
Q Consensus 134 ~~~~~~~g 141 (537)
..+.+..|
T Consensus 319 ye~GAFTG 326 (560)
T COG3829 319 YEKGAFTG 326 (560)
T ss_pred cCCccccc
Confidence 55544444
No 231
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.43 E-value=0.00087 Score=72.85 Aligned_cols=59 Identities=22% Similarity=0.435 Sum_probs=46.4
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecccc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSC 117 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~ 117 (537)
.+.|+...+..+...+........+++|.|.+|||||++++.+-.... .+++.|||...
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~ 200 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI 200 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCC
Confidence 467777777777777655444456799999999999999999887754 48899999765
No 232
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.43 E-value=0.00057 Score=67.92 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=35.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCC------eEEEeccccCCHHHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRP------FVYTSCLSCYSPRILFESIL 128 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~------~~~inc~~~~s~~~l~~~Il 128 (537)
+..+.|.|++|+|||++++.+.+.+... ++++......+...+++.+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~ 69 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK 69 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhc
Confidence 4569999999999999999999887642 23333333467888888773
No 233
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00021 Score=71.72 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=33.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~ 116 (537)
-++|++.||+|+|||.+++.+++.|++||+..+|.+
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 368999999999999999999999999999988755
No 234
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.37 E-value=0.0012 Score=63.97 Aligned_cols=50 Identities=30% Similarity=0.286 Sum_probs=36.0
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~ 118 (537)
.|=.+++.....+..+.|+|+||+|||+++..++.+. +.+++|+++....
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 3444555443444568899999999999999998664 4588899875544
No 235
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.36 E-value=0.0011 Score=65.24 Aligned_cols=50 Identities=30% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s 119 (537)
-...|...+.. .-.-.++||+|||||.+++.+.+.++..++..||.+..+
T Consensus 21 ~~~~l~~al~~----~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~ 70 (231)
T PF12774_consen 21 CFLTLTQALSL----NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD 70 (231)
T ss_dssp HHHHHHHHHCT----TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-
T ss_pred HHHHHHHHhcc----CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc
Confidence 34455555543 233468999999999999999999999888899987554
No 236
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.35 E-value=0.0008 Score=65.73 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=70.7
Q ss_pred HHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHhhcccc--ccCCC---
Q 009352 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLLLHKKN--AFNGY--- 142 (537)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~--~~~g~--- 142 (537)
.+|+.....+..++|.|+||||||+++.+++.+. +.+++||...+ +++.+.+..- ++. +... ..+|.
T Consensus 10 ~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee--~~~~l~~~~~-s~g-~d~~~~~~~g~l~~ 85 (226)
T PF06745_consen 10 ELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE--PPEELIENMK-SFG-WDLEEYEDSGKLKI 85 (226)
T ss_dssp HHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS---HHHHHHHHH-TTT-S-HHHHHHTTSEEE
T ss_pred HhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC--CHHHHHHHHH-HcC-CcHHHHhhcCCEEE
Confidence 3444433345568999999999999988877432 67899998643 4555544432 221 1000 00100
Q ss_pred ---Ccccc---CCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhh
Q 009352 143 ---SSAKR---CEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (537)
Q Consensus 143 ---~~~~r---~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl 216 (537)
..... ..++.++...+.+.++. . +.-++|||.+..|.....+..+...+..+
T Consensus 86 ~d~~~~~~~~~~~~~~~l~~~i~~~i~~----~------------------~~~~vVIDsls~l~~~~~~~~~r~~l~~l 143 (226)
T PF06745_consen 86 IDAFPERIGWSPNDLEELLSKIREAIEE----L------------------KPDRVVIDSLSALLLYDDPEELRRFLRAL 143 (226)
T ss_dssp EESSGGGST-TSCCHHHHHHHHHHHHHH----H------------------TSSEEEEETHHHHTTSSSGGGHHHHHHHH
T ss_pred EecccccccccccCHHHHHHHHHHHHHh----c------------------CCCEEEEECHHHHhhcCCHHHHHHHHHHH
Confidence 00000 23455555544444332 1 12478899999993222223333444445
Q ss_pred hhhcCCCcEEEEEEeCC
Q 009352 217 SDILKMPEVGMIFISST 233 (537)
Q Consensus 217 ~e~~~~~~l~vI~Is~~ 233 (537)
...+...++.+|+++..
T Consensus 144 ~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 144 IKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHCCCEEEEEEcc
Confidence 55443346777887763
No 237
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.34 E-value=0.0028 Score=61.75 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=36.2
Q ss_pred HHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---C------CCeEEEeccccCCHHH
Q 009352 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---S------RPFVYTSCLSCYSPRI 122 (537)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~------~~~~~inc~~~~s~~~ 122 (537)
.+|+.....+..+.|+|+||+|||+++..++... + ..++||++.....+..
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~r 69 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPER 69 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHH
Confidence 3454433444568899999999999999887542 2 5779999876655543
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.002 Score=64.33 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEec
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSC 114 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc 114 (537)
+..++..+..+..... .+.++++||+||||||.++.++..++- ..+.|+++
T Consensus 88 ~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 88 DKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred hHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 4566666666654322 456899999999999999999988763 45555553
No 239
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.31 E-value=0.00065 Score=78.01 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=96.1
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHH
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALI 163 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~ 163 (537)
+.++|+||.|||+....+...++..++-.|...+.|...+++.+.+....+... ++. ...|. -
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~---~~~-~~~~~-----------~-- 422 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIK---GSK-KKKGN-----------R-- 422 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchh---hhh-ccccc-----------c--
Confidence 589999999999999999999999999999999999999888877655333110 000 00000 0
Q ss_pred HHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCC--c-ccccc
Q 009352 164 NVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS--P-DTYHS 240 (537)
Q Consensus 164 ~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~--~-~~f~~ 240 (537)
.......+||++||+|-+...| ..++..+..+.+-+ ..-+|+++|+. + -+-+.
T Consensus 423 -------------------~~~~~~~~vil~devD~~~~~d--Rg~v~~l~~l~~ks---~~Piv~~cndr~~p~sr~~~ 478 (871)
T KOG1968|consen 423 -------------------QSLNSDHFLILMDEVDGMFGED--RGGVSKLSSLCKKS---SRPLVCTCNDRNLPKSRALS 478 (871)
T ss_pred -------------------cccccceeEEEEeccccccchh--hhhHHHHHHHHHhc---cCCeEEEecCCCCccccchh
Confidence 0012356799999999998744 56677777766632 46688888874 1 22222
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 241 NTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 241 r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
++. ..|+|+..+.+++..-|+.
T Consensus 479 ~~~----~~l~f~kP~~~~i~~ri~s 500 (871)
T KOG1968|consen 479 RAC----SDLRFSKPSSELIRSRIMS 500 (871)
T ss_pred hhc----ceeeecCCcHHHHHhhhhh
Confidence 322 5899999999998877754
No 240
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.30 E-value=0.0016 Score=70.26 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=46.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
.+.++...+..+...+........+++|+|++||||+++++.+-.... .+++.|||....
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~ 202 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP 202 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC
Confidence 366777777777776655434456799999999999999999876654 488999998753
No 241
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.23 E-value=0.0011 Score=62.33 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=30.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHH
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~ 126 (537)
++|+|+||||||+++..++.+. +.++.|++..+ ++..+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC--CHHHHHHH
Confidence 6899999999999998887543 46888987643 45555444
No 242
>PRK05973 replicative DNA helicase; Provisional
Probab=97.22 E-value=0.0027 Score=62.53 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=35.0
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHH
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~I 127 (537)
++..++|.|+||+|||+++..++.+. +.+++|+.+.+ ++..+.++.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC--CHHHHHHHH
Confidence 34568999999999999988887643 56888997754 566666664
No 243
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.20 E-value=0.0018 Score=64.87 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHHHcccCCCCCC--eEEECCCCCCHHHHHHHHHHhcC
Q 009352 61 PGRRVQILELLRLLGTLNSSMPP--LFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~--l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.-++..+..+..++.... +..| +-+||.+||||..+.+.+++++-
T Consensus 89 la~~~Vv~alk~~~~n~~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 89 LAKQLVVNALKSHWANPN-PRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HHHHHHHHHHHHHhcCCC-CCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 345556666777776543 3334 56899999999999999998864
No 244
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0066 Score=61.60 Aligned_cols=163 Identities=13% Similarity=0.129 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhccccccCC
Q 009352 65 VQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLHKKNAFNG 141 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g 141 (537)
..+..|...+... ..+ ..+++|| +||++++..+++.+-... -.-.|..|.+-+.+.. +..|+- .-
T Consensus 9 ~~~~~L~~~~~~~--rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~-------~~HPD~-~~ 76 (290)
T PRK07276 9 KVFQRFQTILEQD--RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQ-------GEFSDV-TV 76 (290)
T ss_pred HHHHHHHHHHHcC--CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc-------CCCCCe-ee
Confidence 4556666766552 334 4788996 689999999998764211 1124666654333221 222221 00
Q ss_pred CCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcC
Q 009352 142 YSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK 221 (537)
Q Consensus 142 ~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~ 221 (537)
+......-+ ++.++++...+.. ....++.-|+|||++|++.. .--++|++.-|-.+
T Consensus 77 i~p~~~~I~----idqIR~l~~~~~~---------------~p~~~~~kV~II~~ad~m~~-----~AaNaLLKtLEEPp 132 (290)
T PRK07276 77 IEPQGQVIK----TDTIRELVKNFSQ---------------SGYEGKQQVFIIKDADKMHV-----NAANSLLKVIEEPQ 132 (290)
T ss_pred ecCCCCcCC----HHHHHHHHHHHhh---------------CcccCCcEEEEeehhhhcCH-----HHHHHHHHHhcCCC
Confidence 000000111 2335544443211 01123445788899999964 22356777777643
Q ss_pred CCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 222 MPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 222 ~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
++..+|++++. ++.+++.+.++ ...|+|++ +.+++.++|...
T Consensus 133 -~~t~~iL~t~~-~~~lLpTI~SR-cq~i~f~~-~~~~~~~~L~~~ 174 (290)
T PRK07276 133 -SEIYIFLLTND-ENKVLPTIKSR-TQIFHFPK-NEAYLIQLLEQK 174 (290)
T ss_pred -CCeEEEEEECC-hhhCchHHHHc-ceeeeCCC-cHHHHHHHHHHc
Confidence 56778888776 44554433322 26899988 899999999643
No 245
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.18 E-value=0.00065 Score=65.70 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+.|...+..++... ...+|.||||||||+++..++..+
T Consensus 4 ~~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 4 ESQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 46777777777652 247999999999998888888776
No 246
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.17 E-value=0.00073 Score=70.76 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.++|.|.||||||.++-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 247
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.17 E-value=0.004 Score=61.04 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=37.1
Q ss_pred HHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHH
Q 009352 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRIL 123 (537)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---------~~~~~~inc~~~~s~~~l 123 (537)
.+|+.....+..+.|+|+||+|||+++..++-.. +..++||++.+..+++.+
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 3454443444568899999999999999997442 258899998776565444
No 248
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.16 E-value=0.003 Score=61.66 Aligned_cols=50 Identities=28% Similarity=0.353 Sum_probs=35.9
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~ 120 (537)
|=.+++.....+..+.|+|+||+|||+++.+++.+. +.+++|+.+. ..++
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~ 64 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSP 64 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCH
Confidence 334454433444568999999999999999998643 5689999887 3444
No 249
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.15 E-value=0.0028 Score=62.56 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=41.4
Q ss_pred HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHHH
Q 009352 68 LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 68 ~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc~~~~s~~~l~~~ 126 (537)
..|=.+++....++..++|+|+||+|||+++..++.+ -+.+.+|+...+ ++..+.+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHH
Confidence 3444556655555667999999999999998887754 256889998754 66666655
No 250
>PRK10536 hypothetical protein; Provisional
Probab=97.14 E-value=0.0036 Score=62.07 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
+..|......+...+.. ...+++.|++|||||+++.++..+
T Consensus 57 i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 57 ILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 45555555566666644 358999999999999999998863
No 251
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.13 E-value=0.0019 Score=61.84 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++|.+.+..++.+ +.+..+|.|+||||||++++.+.+.+.
T Consensus 4 ~~Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~ 43 (196)
T PF13604_consen 4 EEQREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALE 43 (196)
T ss_dssp HHHHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3677777777754 234588999999999999999886654
No 252
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.12 E-value=0.00038 Score=60.70 Aligned_cols=27 Identities=19% Similarity=0.508 Sum_probs=24.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
|+|.|+||+||||+++.+.+.++.+++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVI 28 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 789999999999999999999975544
No 253
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.017 Score=58.89 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=63.1
Q ss_pred EEEEEEeCCCcccccCC-CC-ChH-----HHHHhhhhhcC-------CCcEEEEEEeCCC-----ccccccCCCCCCCce
Q 009352 189 MIYLIFDNFELVREWDK-SS-SIL-----PFLFGLSDILK-------MPEVGMIFISSTS-----PDTYHSNTGYVAPIH 249 (537)
Q Consensus 189 ~~vlVLDe~D~L~~~d~-~~-~lL-----~~L~rl~e~~~-------~~~l~vI~Is~~~-----~~~f~~r~~~~~p~~ 249 (537)
.-+|+|||+|++..... ++ ++- --|+-+.|=+. ..-=.+.||+... |..+.+-..-+.|+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceE
Confidence 34888999999985431 11 110 01112222110 0001356776642 456666555678899
Q ss_pred eecCCCCHHHHHHHHHhcCCChhhhhHHHHHHhh-ccc-cccCC-HHHHHHHHHHh
Q 009352 250 VYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLR-PFC-RITKR-VDELSTAFSLL 302 (537)
Q Consensus 250 I~FppYt~~el~~IL~~~r~~~~l~~~~~~~il~-~~~-~~~r~-l~~L~~~~~~l 302 (537)
|.+.+.|.+++..||. .+...+..+|...+-. -+. .-+.+ +..|..+++.+
T Consensus 331 VEL~~Lt~~Df~rILt--ep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~v 384 (444)
T COG1220 331 VELDALTKEDFERILT--EPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQV 384 (444)
T ss_pred EEcccCCHHHHHHHHc--CcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHh
Confidence 9999999999999994 5556777777654331 111 12222 55566655444
No 254
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.10 E-value=0.0024 Score=65.72 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=35.5
Q ss_pred HHHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009352 72 RLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (537)
Q Consensus 72 ~ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~ 120 (537)
.+|+ .....+..+.|+||||||||+++..++.+. +.+++||++.+..++
T Consensus 45 ~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 45 LALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred HHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH
Confidence 3455 434445568999999999999988877543 458899988765544
No 255
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00039 Score=62.54 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=31.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRIL 123 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l 123 (537)
.|+|+|+|.|||||||+...+.+.++.+ ||+|....-...|
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~--~i~isd~vkEn~l 47 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLE--YIEISDLVKENNL 47 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCc--eEehhhHHhhhcc
Confidence 5789999999999999999999988755 5565544333333
No 256
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.09 E-value=0.0041 Score=63.96 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHH--h-------cCCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFR--H-------LSRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~--~-------l~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
|=.+|+.....+..+.|+|+||+|||.++..++- + .+.+++||+..+.+++..+.+ ++..+
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~ 154 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERF 154 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHc
Confidence 4445665444455678999999999999987763 2 235899999888778776644 44444
No 257
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.08 E-value=0.0038 Score=61.45 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=40.1
Q ss_pred CCCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 78 NSSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 78 ~~~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
..++..++|.|+||+|||+++..++.+. +.+++|+++.+ ++..+..+++....+
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~--~~~~~~~r~~~~~~~ 67 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM--SKEQLLQRLLASESG 67 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC--CHHHHHHHHHHHhcC
Confidence 3445568999999999999988887553 67889998765 666777776655433
No 258
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.08 E-value=0.0061 Score=62.88 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=41.0
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHHHH
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---------~~~~~~inc~~~~s~~~l~~ 125 (537)
.|-.+|+.....+..+.|+|+||+|||+++..++-.. +.+++||++.+..++..+.+
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 3444555433444457899999999999999888552 34899999988777766544
No 259
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.07 E-value=0.0019 Score=56.39 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++|+|++|+|||.++..++..+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 589999999999988888886653
No 260
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.07 E-value=0.0063 Score=64.80 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=37.6
Q ss_pred cCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
....|..-+.++...+.. .+ .++|+||-++||||+++.+.+.+....+|+|-
T Consensus 18 ~~~~~~~~~~~l~~~~~~----~~~i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~ 70 (398)
T COG1373 18 WEIERRKLLPRLIKKLDL----RPFIILILGPRQVGKTTLLKLLIKGLLEEIIYINF 70 (398)
T ss_pred HhhhHHhhhHHHHhhccc----CCcEEEEECCccccHHHHHHHHHhhCCcceEEEEe
Confidence 344555555666665544 34 78999999999999998888887655777763
No 261
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.05 E-value=0.0021 Score=67.02 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-----CeEEEecc-ccCCHHHHHHHHHHHHh
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-----PFVYTSCL-SCYSPRILFESILNQLL 132 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~-----~~~~inc~-~~~s~~~l~~~Il~~L~ 132 (537)
+..++.+. ..+...+|.|++|||||++++.+++.+.. .++++-+. ...+...+++.+...+.
T Consensus 123 vID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vv 190 (380)
T PRK12608 123 VVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVY 190 (380)
T ss_pred hhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEE
Confidence 44444432 22456899999999999999999987642 23343333 34567888888877553
No 262
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.05 E-value=0.0031 Score=68.19 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
+.+....+..+...+........+++++|++||||+++++.+-.... .+++.+||....
T Consensus 145 ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~ 206 (457)
T PRK11361 145 ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP 206 (457)
T ss_pred eecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence 44555555555555544434456799999999999999999976643 589999998753
No 263
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.02 E-value=0.002 Score=67.77 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=35.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCC----eEEEe-c-cccCCHHHHHHHHHHH
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRP----FVYTS-C-LSCYSPRILFESILNQ 130 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~~----~~~in-c-~~~~s~~~l~~~Il~~ 130 (537)
.+..+.|.||+|+|||++++.+.+.+... +++|- . ....+...+++.|...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~ 223 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGE 223 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhce
Confidence 34568999999999999999999886533 22222 2 2235677777777543
No 264
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.02 E-value=0.0038 Score=64.31 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=35.9
Q ss_pred HHHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCH
Q 009352 72 RLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSP 120 (537)
Q Consensus 72 ~ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc~~~~s~ 120 (537)
.+|+ .....+..+.||||||+|||+++..++.+ .+...+||++.+...+
T Consensus 45 ~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 45 IALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred HHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHH
Confidence 3455 33344456889999999999999988754 3568999998765554
No 265
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.02 E-value=0.0071 Score=62.90 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh--c-------CCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--L-------SRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~--l-------~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
|=.+|+..+..+....|+|+||||||.++..++-. + +.+++||+....+++..+.+ ++..+
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~ 184 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERF 184 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHc
Confidence 33345544344445789999999999999887622 2 25889999988888877654 44444
No 266
>PRK06696 uridine kinase; Validated
Probab=97.01 E-value=0.0013 Score=64.21 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009352 62 GRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~ 120 (537)
.|++.+.+|+..+.....+.+. |.|.|++|+||||+++.+.+.| +.+++.+.+...+-+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 4888999999988653333333 7799999999999999999998 456666666666543
No 267
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.01 E-value=0.011 Score=58.15 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=26.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC--CeEEEecc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCL 115 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~ 115 (537)
.+.|-|++|||||+++..++..+.. .++++-|.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 5899999999999999999998865 45555443
No 268
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.00 E-value=0.0038 Score=58.05 Aligned_cols=66 Identities=18% Similarity=0.109 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHH-HHHHHHHhcCC---CeEEEeccccCCHHHHHHHHHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTS-IIIQVFRHLSR---PFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTs-iv~~vl~~l~~---~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
-|+.|..-+..++... ..++|.|++|||||. ++..+++.+.. ..+.+-|........++..+...+
T Consensus 9 ~~~~Q~~~~~~~~~~~----~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 9 LRPYQKEAIEALLSGL----RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred CCHHHHHHHHHHHcCC----CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 3567777776666541 689999999999998 55555554432 223333333222344444444433
No 269
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.97 E-value=0.0013 Score=58.93 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
+++..++...+.....++..+++.|+.|+|||++++.+++.++.
T Consensus 5 ~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35677777777766556667999999999999999999999884
No 270
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.92 E-value=0.0077 Score=60.30 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=33.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHHHH
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc~~~~s~~~l~~~I 127 (537)
.+..++|+|+||||||+++.+++.+ .+.+.+|+...+ +...+++.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee--~~~~~~~~l 83 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES--PANFVYTSL 83 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC--CchHHHHHH
Confidence 3445899999999999999988754 246889988753 444444444
No 271
>PRK15115 response regulator GlrR; Provisional
Probab=96.90 E-value=0.0066 Score=65.46 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecccc
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSC 117 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~ 117 (537)
+.++...+..+...+........+++|+|++|||||++++.+-+... .+++.+||...
T Consensus 136 lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~ 196 (444)
T PRK15115 136 IVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGAL 196 (444)
T ss_pred ccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCC
Confidence 45555556555555444333456899999999999999999887654 58999999875
No 272
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.90 E-value=0.0087 Score=58.81 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=38.8
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHHH
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc~~~~s~~~l~~~ 126 (537)
.|=.+|+.....+..++|+|+||+|||+++.+++.. .+.+++|+...+ +++.+.+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~--~~~~~~~~ 71 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN--TSKSYLKQ 71 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC--CHHHHHHH
Confidence 344445544444556899999999999999999754 246888988753 55555444
No 273
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.89 E-value=0.02 Score=60.85 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=53.7
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccc---cC----CHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLS---CY----SPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc~~---~~----s~~~l~~~ 126 (537)
.--+||+.++..|..-|.....++.. -+|.|.=|+|||.+.+.+.+. -+..+++|++.. .+ -...+|.+
T Consensus 25 ~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~fvvs~v~ls~e~~lh~~~g~~~~~Yr~ 104 (416)
T PF10923_consen 25 HIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKGFVVSEVDLSPERPLHGTGGQLEALYRE 104 (416)
T ss_pred ceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcCCEEEEEecCCCcccccccccHHHHHHH
Confidence 34599999999999988764444443 699999999999888877753 334556665554 12 33558888
Q ss_pred HHHHHhh
Q 009352 127 ILNQLLL 133 (537)
Q Consensus 127 Il~~L~~ 133 (537)
|+..|.-
T Consensus 105 l~~nL~t 111 (416)
T PF10923_consen 105 LMRNLST 111 (416)
T ss_pred HHHhcCC
Confidence 8887753
No 274
>PTZ00035 Rad51 protein; Provisional
Probab=96.89 E-value=0.0096 Score=61.94 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=38.5
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHH
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRIL 123 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---------~~~~~~inc~~~~s~~~l 123 (537)
.|=.+|+.....+..+.|+|++|+|||+++..++-.. +..++||+.....++..+
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri 169 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI 169 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH
Confidence 3444565544445568899999999999998887422 346789998776666553
No 275
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.88 E-value=0.0018 Score=69.92 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=37.7
Q ss_pred HHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009352 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (537)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~ 116 (537)
+.+|-.+|+....++..++|+|+||+|||+++.+++... +.+++|+...+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 344555676554555568999999999999999998765 46889998754
No 276
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.84 E-value=0.013 Score=57.56 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=37.1
Q ss_pred HHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHH
Q 009352 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~I 127 (537)
..++.....+..++|.|++|||||+++.+++..+ +.+.+|+.+.+ ++..+++..
T Consensus 15 ~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 15 KRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred hhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC--CHHHHHHHH
Confidence 3344434445578999999999999976665543 45888888543 566666655
No 277
>PRK09354 recA recombinase A; Provisional
Probab=96.82 E-value=0.0093 Score=61.94 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=36.3
Q ss_pred HHHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCH
Q 009352 72 RLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSP 120 (537)
Q Consensus 72 ~ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc~~~~s~ 120 (537)
.+|+ .....+..+.||||+|||||+++..++.+ .+...+||++-....+
T Consensus 50 ~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 50 IALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred HHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH
Confidence 3455 44444556889999999999999988754 3568999998765554
No 278
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.82 E-value=0.0066 Score=67.92 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=32.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC----C--CeEEEeccccCCHHHHHHHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS----R--PFVYTSCLSCYSPRILFESILNQ 130 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~----~--~~~~inc~~~~s~~~l~~~Il~~ 130 (537)
+..+|.|+||||||++++.++..+. . ..+++-+.+..-...+-+++-..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 4689999999999999999987651 1 23555444444445555555433
No 279
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.81 E-value=0.0017 Score=67.19 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=45.5
Q ss_pred HHhhcCCChHHHHHH---HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccCCH
Q 009352 55 DLLSRFPGRRVQILE---LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCYSP 120 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~---L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~--~~~~~inc~~~~s~ 120 (537)
+..+-++|..+.-+. +..++...--.+..+++.||||||||+++-++.++|+ .||+.++..+.+|.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~ 91 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS 91 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec
Confidence 344567777666544 4445544322467899999999999999999999998 68999999998875
No 280
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.80 E-value=0.007 Score=60.70 Aligned_cols=52 Identities=13% Similarity=0.003 Sum_probs=38.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
++..++|.|+||+|||+++.+++.++ +.+++|+++.+ +...+..++...+.+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~~ 84 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRLLGQYAG 84 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHHHHHHhC
Confidence 44568999999999999998887653 56888998755 456666666655443
No 281
>PRK08118 topology modulation protein; Reviewed
Probab=96.77 E-value=0.0025 Score=59.44 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=29.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
..|+|.|++|+||||+++.+.+.++.+++.+++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999988887764
No 282
>PRK04296 thymidine kinase; Provisional
Probab=96.77 E-value=0.0021 Score=61.20 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=23.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~in 113 (537)
..+|+||+|+|||+.+..++..+ +.++++++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46899999999999888888765 33555553
No 283
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.75 E-value=0.0044 Score=58.01 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=35.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQ 130 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~ 130 (537)
.++|.|+||+|||+.+..++..++.+++|+....... ...-++|-..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~-~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFD-DEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCCh-HHHHHHHHHH
Confidence 4899999999999999999999887888887655432 3444555443
No 284
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=96.73 E-value=0.0032 Score=65.19 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=34.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCCHHHHHH
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~s~~~l~~ 125 (537)
.+..++|-|.||||||+.+-.+++.+.. ++.||+.+ .++..+|+
T Consensus 9 ~G~TLLIKG~PGTGKTtfaLelL~~l~~~~~v~YISTR--Vd~d~vy~ 54 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTTFALELLNSLKDHGNVMYISTR--VDQDTVYE 54 (484)
T ss_pred CCcEEEEecCCCCCceeeehhhHHHHhccCCeEEEEec--cCHHHHHH
Confidence 4667999999999999999999999874 66899866 44545543
No 285
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.72 E-value=0.0075 Score=65.94 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=44.0
Q ss_pred HHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHH
Q 009352 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~ 126 (537)
+..|-.+|+....++..++|.||||+|||+++.+++.+. +.+.+|+...+ ++.++..+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC--CHHHHHHH
Confidence 455666687766666779999999999999999999754 45889988655 55566555
No 286
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.72 E-value=0.0021 Score=65.74 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=49.6
Q ss_pred hHHhhcCCChHHHHHH---HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccCCH
Q 009352 54 DDLLSRFPGRRVQILE---LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCYSP 120 (537)
Q Consensus 54 ~~l~~~~~~Re~qi~~---L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~--~~~~~inc~~~~s~ 120 (537)
.++.+-++|-++.-+. +..++...--.+..+++.||||||||+++-.+.++|+ .||+-++..+.||.
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~ 106 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSL 106 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeee
Confidence 3455666665544322 4445554333467799999999999999999999998 68999999988874
No 287
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.0087 Score=59.49 Aligned_cols=149 Identities=10% Similarity=0.026 Sum_probs=80.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREAL 162 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l 162 (537)
.++++|+.|+||..++.++++.+-..-..-.|..|.+=+.+.. +..|+-.. .......-. ++..+++.
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~-------~~HPDl~~-i~p~~~~I~----id~ir~l~ 76 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILN-------GKYNDFYL-IFDQKNPIK----KEDALSII 76 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhc-------CCCCCEEE-ecCCcccCC----HHHHHHHH
Confidence 4899999999999999999987642111114777765333211 11121100 000000111 23344444
Q ss_pred HHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCC
Q 009352 163 INVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNT 242 (537)
Q Consensus 163 ~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~ 242 (537)
+.+.. ++ ...++.-|+|||++|++.. +--.+|+++-|--+ ++..+|++++. ++.+++.+
T Consensus 77 ~~l~~--------~s------~e~~~~KV~II~~ae~m~~-----~AaNaLLK~LEEPp-~~t~fiLit~~-~~~lLpTI 135 (261)
T PRK05818 77 NKLNR--------PS------VESNGKKIYIIYGIEKLNK-----QSANSLLKLIEEPP-KNTYGIFTTRN-ENNILNTI 135 (261)
T ss_pred HHHcc--------Cc------hhcCCCEEEEeccHhhhCH-----HHHHHHHHhhcCCC-CCeEEEEEECC-hHhCchHh
Confidence 33211 00 0122345778899999963 33467888777643 67888888876 34444333
Q ss_pred CCCCCceeecCCC----------CHHHHHHHHH
Q 009352 243 GYVAPIHVYFPEC----------TEDDLRQIFM 265 (537)
Q Consensus 243 ~~~~p~~I~FppY----------t~~el~~IL~ 265 (537)
.++ ...++|++. +.+++.++|.
T Consensus 136 ~SR-Cq~~~~~~~~~~~~~~~~~~~~~i~~~L~ 167 (261)
T PRK05818 136 LSR-CVQYVVLSKEKKVPFKVESNDRYFQYILL 167 (261)
T ss_pred hhh-eeeeecCChhhhcccccccChHHHHHHHH
Confidence 222 146778887 6666666664
No 288
>PRK04328 hypothetical protein; Provisional
Probab=96.70 E-value=0.017 Score=57.49 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh-c--CCCeEEEeccccCCHHHHHH
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-L--SRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~-l--~~~~~~inc~~~~s~~~l~~ 125 (537)
.|=.+|+....++..++|+|+||||||+++..++.+ + +.+.+|++..+ ++..+.+
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~ 68 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRR 68 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHH
Confidence 344446554445567999999999999998887754 2 45889998755 5655444
No 289
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.69 E-value=0.023 Score=55.50 Aligned_cols=54 Identities=24% Similarity=0.228 Sum_probs=36.3
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh-c--CCCeEEEeccccCCHHHHH
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-L--SRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~-l--~~~~~~inc~~~~s~~~l~ 124 (537)
.|=.+++.....+..++|+|+||+|||+++..++.+ + +.+.+|++..+ ++..+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~--~~~~i~ 64 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE--SRESII 64 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC--CHHHHH
Confidence 344455444455667999999999999998877643 2 45788888743 344443
No 290
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.67 E-value=0.012 Score=61.15 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=41.7
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh--c-------CCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--L-------SRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~--l-------~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
|=.+|+.....+..+.|+|+||+|||+++..++-. + +.+++||++.+..++..+. .|++.+
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~ 181 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERF 181 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHc
Confidence 33445544444555789999999999999877633 1 2379999998888876653 344444
No 291
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.66 E-value=0.0076 Score=63.48 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=36.5
Q ss_pred HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccc
Q 009352 68 LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLS 116 (537)
Q Consensus 68 ~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~ 116 (537)
.+|-.+|+....++..++|+|+||+|||+++..++..+. .+++|++..+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 444455665555556689999999999999999986643 4788988754
No 292
>PRK14974 cell division protein FtsY; Provisional
Probab=96.65 E-value=0.037 Score=57.48 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=27.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~ 118 (537)
.+.+.|++|+||||++..++..+ +.++++++|....
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 37899999999999999888765 3467777776543
No 293
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.037 Score=56.54 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=50.8
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+.-|+|||++|.+.+ .-..+|++.-|-.+ +++.+||+++. ++++++.+.+ ....+.|++.+.+++.+.|..
T Consensus 90 ~~KvvII~~~e~m~~-----~a~NaLLK~LEEPp-~~t~~il~~~~-~~kll~TI~S-Rc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 90 QKKILIIKNIEKTSN-----SLLNALLKTIEEPP-KDTYFLLTTKN-INKVLPTIVS-RCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred CceEEEEecccccCH-----HHHHHHHHHhhCCC-CCeEEEEEeCC-hHhChHHHHh-CeEEEECCCCCHHHHHHHHHH
Confidence 456778899998853 23456777767654 67888888875 4666543332 226899999999999999964
No 294
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.64 E-value=0.011 Score=70.45 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009352 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~ 118 (537)
--+..+.+.++- +.++++-|.||+|||+++.++++..+.+.+.||..+-.
T Consensus 1531 ~Nl~rVlRAmqv----~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT 1580 (4600)
T COG5271 1531 VNLRRVLRAMQV----GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT 1580 (4600)
T ss_pred HhHHHHHHHHhc----CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc
Confidence 344555555544 67999999999999999999999999999999987644
No 295
>PHA02624 large T antigen; Provisional
Probab=96.62 E-value=0.0042 Score=68.20 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=31.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~ 118 (537)
....+++|||+|||||+++.++++.|+...+-|||....
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k 468 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK 468 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch
Confidence 334699999999999999999999997666668865543
No 296
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.62 E-value=0.0078 Score=61.72 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=63.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (537)
.-+|+||+-|.|||.++..+.+.+...-- ..+ + -..+...+.+.+..+. |.+ +++.. +
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k-~R~--H--Fh~FM~~vH~~l~~l~-----g~~---------dpl~~---i 123 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGERK-RRL--H--FHRFMARVHQRLHTLQ-----GQT---------DPLPP---I 123 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCcccc-ccc--c--HHHHHHHHHHHHHHHc-----CCC---------CccHH---H
Confidence 45999999999999999999999874210 000 1 1234444555554332 111 11111 1
Q ss_pred HHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC-CChHHHHHhhhhhcCCCcEEEEEEeCCCcccccc
Q 009352 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS-SSILPFLFGLSDILKMPEVGMIFISSTSPDTYHS 240 (537)
Q Consensus 162 l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~-~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~ 240 (537)
-..+. +..-||.+||++ .. |-+ ..+|..|+. ++.. .+|.+|..||..|+.++.
T Consensus 124 A~~~~--------------------~~~~vLCfDEF~--Vt-DI~DAMiL~rL~~--~Lf~-~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 124 ADELA--------------------AETRVLCFDEFE--VT-DIADAMILGRLLE--ALFA-RGVVLVATSNTAPDNLYK 177 (367)
T ss_pred HHHHH--------------------hcCCEEEeeeee--ec-ChHHHHHHHHHHH--HHHH-CCcEEEEeCCCChHHhcc
Confidence 11111 134599999998 22 211 344444433 4443 578899999999887764
No 297
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.62 E-value=0.011 Score=68.75 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-C-----CeEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-R-----PFVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~-~-----~~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+|.|.-++.+...|-.. +...+-|||.-|.||||+++.+.++.. + .+++|.-..-.+.+.+.+.|+..++..
T Consensus 161 VG~e~~~~kl~~~L~~d--~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED--DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccC--CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 89999999999988663 224688999999999999999998875 2 455665556788899999999988654
No 298
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.61 E-value=0.021 Score=61.34 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHcccCC-----CCC-CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009352 68 LELLRLLGTLNS-----SMP-PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (537)
Q Consensus 68 ~~L~~ll~~~~~-----~~~-~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~ 118 (537)
++|..+++.... ..| .++++|++|+||||++..++..+ +.++.+|.|....
T Consensus 76 ~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 76 EELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred HHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 455566654321 123 37899999999999999998766 3577778776543
No 299
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.59 E-value=0.016 Score=56.43 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=37.9
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh-c--CCCeEEEeccccCCHHHHHHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-L--SRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~-l--~~~~~~inc~~~~s~~~l~~~ 126 (537)
|=.+++....++..++|.|+||+|||+++..++.+ + +.+.+|++..+ ++..+.+.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE--REERILGY 62 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHH
Confidence 34445443344556899999999999998888744 2 56888998765 55555444
No 300
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.59 E-value=0.0024 Score=66.35 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=39.3
Q ss_pred cCCChHHHHHHHHHHHcccCCC----CCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 59 RFPGRRVQILELLRLLGTLNSS----MPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~----~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.+.|=++.+.+|...+.....+ ...++|+||||+||||+++.+.+.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5777788888888887664431 234799999999999999999999874
No 301
>PF13245 AAA_19: Part of AAA domain
Probab=96.58 E-value=0.0035 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=16.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
+.++|.||||||||+++...+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34667999999999555555443
No 302
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0027 Score=58.11 Aligned_cols=40 Identities=23% Similarity=0.411 Sum_probs=32.9
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
|-|.|+|||||||+.+.+.++++.+++ +...+|..+....
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~v--------saG~iFR~~A~e~ 42 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLV--------SAGTIFREMARER 42 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCcee--------eccHHHHHHHHHc
Confidence 679999999999999999999997654 4456777776654
No 303
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.56 E-value=0.0024 Score=56.54 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=23.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
+++|.|+||+|||++++++.+.++..+..|.|.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~t 33 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFT 33 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEec
Confidence 478999999999999999999999999888874
No 304
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.06 Score=54.60 Aligned_cols=149 Identities=7% Similarity=0.035 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHh-hccccccCCC
Q 009352 65 VQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLL-LHKKNAFNGY 142 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~-~~~~~~~~g~ 142 (537)
....+|...+.. ...++ .+++||.|+||++++..+.+.+ .|..... -+..+. +..|+-. -+
T Consensus 4 ~~~~~L~~~i~~--~rl~HAyLf~G~~G~Gk~~lA~~~A~~l-------lC~~~~~-------~c~~~~~~~HPD~~-~i 66 (290)
T PRK05917 4 AAWEALIQRVRD--QKVPSAIILHGQDLSNLSARAYELASLI-------LKETSPE-------AAYKISQKIHPDIH-EF 66 (290)
T ss_pred HHHHHHHHHHHc--CCcCeeEeeECCCCCcHHHHHHHHHHHH-------hCCCCcc-------HHHHHhcCCCCCEE-EE
Confidence 345677777755 23344 7799999999999999999876 3422100 011121 1112100 00
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCC
Q 009352 143 SSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKM 222 (537)
Q Consensus 143 ~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~ 222 (537)
........+ -++..+++...+.. ....+..-|+|||++|++.. +--++|++.-|-.+
T Consensus 67 ~p~~~~~~I--~idqiR~l~~~~~~---------------~p~e~~~kv~ii~~ad~mt~-----~AaNaLLK~LEEPp- 123 (290)
T PRK05917 67 SPQGKGRLH--SIETPRAIKKQIWI---------------HPYESPYKIYIIHEADRMTL-----DAISAFLKVLEDPP- 123 (290)
T ss_pred ecCCCCCcC--cHHHHHHHHHHHhh---------------CccCCCceEEEEechhhcCH-----HHHHHHHHHhhcCC-
Confidence 000000001 13334444333211 01124455778899999964 22357778777753
Q ss_pred CcEEEEEEeCCCccccccCCCCCCCceeecCCC
Q 009352 223 PEVGMIFISSTSPDTYHSNTGYVAPIHVYFPEC 255 (537)
Q Consensus 223 ~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppY 255 (537)
+++.+|++++. ++.+++.+.++ ...++|++.
T Consensus 124 ~~~~fiL~~~~-~~~ll~TI~SR-cq~~~~~~~ 154 (290)
T PRK05917 124 QHGVIILTSAK-PQRLPPTIRSR-SLSIHIPME 154 (290)
T ss_pred CCeEEEEEeCC-hhhCcHHHHhc-ceEEEccch
Confidence 57888888877 34444322211 157788764
No 305
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.49 E-value=0.014 Score=60.23 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=38.3
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh--c-------CCCeEEEeccccCCHHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--L-------SRPFVYTSCLSCYSPRI 122 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~--l-------~~~~~~inc~~~~s~~~ 122 (537)
|=.+|+....++..+.|+|+||+|||+++..++.. + +..++||++.+..++..
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R 146 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER 146 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH
Confidence 44445554445556889999999999999888752 2 13679999888777764
No 306
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.48 E-value=0.0094 Score=66.49 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+..+|.|+||||||+++..++..+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988765
No 307
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.43 E-value=0.0071 Score=62.36 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 48 ~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
...++++++.+.-..-..+...|..++.. ..+++|.|++|+||||++++++..+
T Consensus 115 ~~~~tl~~lv~~g~~~~~~~~~L~~~v~~----~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 115 SRLIPLDDYVTSKIMTEAQASVIRSAIDS----RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCCHHHHHHcCCCCHHHHHHHHHHHHc----CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44566776665544455666666666654 5689999999999999999999886
No 308
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.39 E-value=0.0084 Score=67.22 Aligned_cols=74 Identities=8% Similarity=0.034 Sum_probs=55.5
Q ss_pred hHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCC----eEEE-eccccCCHHHHHHHHH
Q 009352 54 DDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRP----FVYT-SCLSCYSPRILFESIL 128 (537)
Q Consensus 54 ~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~----~~~i-nc~~~~s~~~l~~~Il 128 (537)
+.+.+++.|.++.+..|...+.. ..+++++|+||||||++++.+++.++.. ++|+ |. ..++..++..++
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~----~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~--~~~~~~~~~~v~ 87 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ----KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP--EDPNMPRIVEVP 87 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc----CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC--CCCchHHHHHHH
Confidence 35667889999988888887765 3589999999999999999999998643 3333 32 235667777777
Q ss_pred HHHhh
Q 009352 129 NQLLL 133 (537)
Q Consensus 129 ~~L~~ 133 (537)
.++..
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 76644
No 309
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.38 E-value=0.01 Score=60.75 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=39.2
Q ss_pred CCCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 48 ~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..+++++++.+.=..-+.+...|..++.. ..+++|.|++|+||||+++++++.+.
T Consensus 103 ~~~~tl~~l~~~g~~~~~~~~~L~~~v~~----~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 103 VAVFTLDDYVEAGIMTAAQRDVLREAVLA----RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCCCCHHHHHhcCCCCHHHHHHHHHHHHc----CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 44566776654332334555666666653 56899999999999999999998863
No 310
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.36 E-value=0.026 Score=59.81 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
....++..|.+++.- .+..-|+++.||+|||||.+..++..+
T Consensus 191 ~~r~k~~~L~rl~~f-ve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 191 EARQKLLLLARLLPL-VEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred ChHHHHHHHHhhHHH-HhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 455667777776322 233568999999999999998876544
No 311
>PF13479 AAA_24: AAA domain
Probab=96.34 E-value=0.0072 Score=58.65 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=24.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~ 116 (537)
.++|||+||+|||+++..+ .+.++|+|..
T Consensus 5 ~~lIyG~~G~GKTt~a~~~-----~k~l~id~E~ 33 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL-----PKPLFIDTEN 33 (213)
T ss_pred EEEEECCCCCCHHHHHHhC-----CCeEEEEeCC
Confidence 4899999999999998877 4778888754
No 312
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.34 E-value=0.0027 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.628 Sum_probs=20.4
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
|+|||+||+|||++++.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999887654
No 313
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.34 E-value=0.004 Score=57.68 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=26.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
...|+|+|++|||||++.+.+.+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4569999999999999999999999866553
No 314
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.33 E-value=0.017 Score=65.24 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=33.4
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++|-+.....|.-.+-.. ....|+|.|++|||||++++.+.+.+.
T Consensus 5 ~ivGq~~~~~al~~~av~~--~~g~vli~G~~GtgKs~lar~l~~~lp 50 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDP--RIGGVLIRGEKGTAKSTAARGLAALLP 50 (633)
T ss_pred hhcChHHHHHHHHHHhhCC--CCCeEEEEcCCCCcHHHHHHHHHHhCC
Confidence 4667666665554443221 234699999999999999999998874
No 315
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.26 E-value=0.0048 Score=55.25 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=24.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~in 113 (537)
+++.|+||+||||+++.+.+.++ ...|+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEe
Confidence 68999999999999999999987 44454
No 316
>PRK13947 shikimate kinase; Provisional
Probab=96.24 E-value=0.0047 Score=57.35 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=26.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
.+|+|.|+||+|||++.+.+.+.++.+++-
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 479999999999999999999999877654
No 317
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.24 E-value=0.022 Score=62.76 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=40.4
Q ss_pred HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHH
Q 009352 68 LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 68 ~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~I 127 (537)
..|-.+++.....+..++|+|+||+|||+++..++.+. +.+.+|+...+ ++..+.+..
T Consensus 260 ~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~--~~~~i~~~~ 320 (509)
T PRK09302 260 PDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE--SRAQLIRNA 320 (509)
T ss_pred HHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC--CHHHHHHHH
Confidence 44445565444445568999999999999999888543 56899997654 466655443
No 318
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0034 Score=58.08 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=25.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~in 113 (537)
.|.|+|.|||||||+.+.+. .++.+++.+|
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999888 8887666543
No 319
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.21 E-value=0.027 Score=56.55 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=77.2
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCC
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCE 149 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~ 149 (537)
+...+.+....+....|||.+|.|||..++...+..+ ...++-...+++...+...++........ .
T Consensus 83 ~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p-~~~l~~~~p~~~a~~~i~~i~~~~~~~~~------------~ 149 (297)
T COG2842 83 IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNP-NALLIEADPSYTALVLILIICAAAFGATD------------G 149 (297)
T ss_pred HhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCc-cceeecCChhhHHHHHHHHHHHHHhcccc------------h
Confidence 3334444433445678999999999999999998765 34456777788888888888777654311 1
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEE
Q 009352 150 KPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIF 229 (537)
Q Consensus 150 ~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~ 229 (537)
...++...+ ...+ .+..-.|++||+|+|. ..-|..|-++++-. .+.+++
T Consensus 150 ~~~d~~~~~-------~~~l----------------~~~~~~iivDEA~~L~-----~~ale~lr~i~d~~---Gi~~vL 198 (297)
T COG2842 150 TINDLTERL-------MIRL----------------RDTVRLIIVDEADRLP-----YRALEELRRIHDKT---GIGVVL 198 (297)
T ss_pred hHHHHHHHH-------HHHH----------------ccCcceeeeehhhccC-----hHHHHHHHHHHHhh---CceEEE
Confidence 223322222 2222 1233456679999995 24466777777764 488888
Q ss_pred EeCC
Q 009352 230 ISST 233 (537)
Q Consensus 230 Is~~ 233 (537)
+++.
T Consensus 199 vG~p 202 (297)
T COG2842 199 VGMP 202 (297)
T ss_pred ecCh
Confidence 8875
No 320
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.16 E-value=0.029 Score=67.23 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=43.2
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-CeEEEeccccC--CHHHHHHHHHHHHh
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-PFVYTSCLSCY--SPRILFESILNQLL 132 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~-~~~~inc~~~~--s~~~l~~~Il~~L~ 132 (537)
.+|-. ....+|...|.. ...++|.|++|+||||.+=.++-+.+. ....|-|.+-. ..+.+.+++...+.
T Consensus 65 ~LPi~-~~~~~Il~~l~~----~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg 136 (1283)
T TIGR01967 65 NLPVS-AKREDIAEAIAE----NQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELG 136 (1283)
T ss_pred CCCHH-HHHHHHHHHHHh----CceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhC
Confidence 34443 334666676754 457899999999999998888776653 23345454321 23455566666653
No 321
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.15 E-value=0.043 Score=51.04 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=28.9
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~ 118 (537)
+++.|++|+|||+++..++..+ +.++++++|....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 6789999999999999988765 4678889987543
No 322
>PRK13695 putative NTPase; Provisional
Probab=96.14 E-value=0.0051 Score=57.51 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=40.0
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc-cccccCCCC-CCCceeecCCCCHHHHHHHHH
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP-DTYHSNTGY-VAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~-~~f~~r~~~-~~p~~I~FppYt~~el~~IL~ 265 (537)
++-+|||||+..+...+ ..+...+..+.+ .+.++|++++... ..+..++.. ..-..+++.+=+++++...+.
T Consensus 96 ~~~~lllDE~~~~e~~~--~~~~~~l~~~~~----~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~ 169 (174)
T PRK13695 96 EADVIIIDEIGKMELKS--PKFVKAVEEVLD----SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEIL 169 (174)
T ss_pred CCCEEEEECCCcchhhh--HHHHHHHHHHHh----CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHH
Confidence 34568999976543211 333444444433 3578888888632 223222221 122567888888888876653
No 323
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.13 E-value=0.044 Score=51.22 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=30.3
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s 119 (537)
++|.|++|+|||+.+..++...+.+.+|+...+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d 37 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFD 37 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCC
Confidence 689999999999999999988777899996655443
No 324
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.13 E-value=0.036 Score=60.66 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=36.6
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccC
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCY 118 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~ 118 (537)
..+.|.+...+.+.-.+ .++.++++.||||||||++++.+...+.. .-..+.+...+
T Consensus 192 ~dv~Gq~~~~~al~~aa----~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~ 250 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAA----AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW 250 (499)
T ss_pred HHhcCcHHHHhhhhhhc----cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence 34566555544444333 34568999999999999999998876542 23344544433
No 325
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.12 E-value=0.046 Score=62.93 Aligned_cols=171 Identities=20% Similarity=0.260 Sum_probs=90.5
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-CeEEEecccc--CCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-PFVYTSCLSC--YSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~-~~~~inc~~~--~s~~~l~~~Il~~L~~~~ 135 (537)
.+|.- +...+|..++.. ...++|.|++|+||||-+-.++-+.+. ..-.|-|.+- ...+.+-+++.+++...
T Consensus 48 ~LPv~-~~~~~i~~ai~~----~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~- 121 (845)
T COG1643 48 GLPVT-AVRDEILKAIEQ----NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEK- 121 (845)
T ss_pred cCCcH-HHHHHHHHHHHh----CCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCC-
Confidence 34443 556777777776 467999999999999988888766553 2223444432 23355556666666443
Q ss_pred ccccCCCCc--------cccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCC
Q 009352 136 KNAFNGYSS--------AKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS 207 (537)
Q Consensus 136 ~~~~~g~~~--------~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~ 207 (537)
....-||.. .++-+=+.+ ...++.+... ..-.+--+|||||++.=. .+ .
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTd-GiLlrei~~D-------------------~~Ls~ys~vIiDEaHERS-l~--t 178 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTD-GILLREIQND-------------------PLLSGYSVVIIDEAHERS-LN--T 178 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEecc-HHHHHHHhhC-------------------cccccCCEEEEcchhhhh-HH--H
Confidence 222234431 111111112 1111111110 111233477889998432 12 4
Q ss_pred ChHHHHHh-hhhhcCCCcEEEEEEeCCCc-ccc---ccC------CCCCCCceeec-CCCCHHH
Q 009352 208 SILPFLFG-LSDILKMPEVGMIFISSTSP-DTY---HSN------TGYVAPIHVYF-PECTEDD 259 (537)
Q Consensus 208 ~lL~~L~r-l~e~~~~~~l~vI~Is~~~~-~~f---~~r------~~~~~p~~I~F-ppYt~~e 259 (537)
+++-.|++ +....+ +.+.||+.|.+.- ++| +.. -|...|..|+| ++-..++
T Consensus 179 DilLgllk~~~~~rr-~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~ 241 (845)
T COG1643 179 DILLGLLKDLLARRR-DDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADY 241 (845)
T ss_pred HHHHHHHHHHHhhcC-CCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcch
Confidence 56555443 233322 3599999888753 444 222 12346788988 5555555
No 326
>PRK03839 putative kinase; Provisional
Probab=96.10 E-value=0.0054 Score=57.64 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|+|.|+||+||||+.+.+.+.++.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~i 29 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYV 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3889999999999999999999986654
No 327
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.086 Score=55.83 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=27.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC-------CCeEEEecccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS-------RPFVYTSCLSC 117 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~-------~~~~~inc~~~ 117 (537)
.+++.||+|+||||++..++..+. .++..|.|..+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 488999999999999999987653 35666666543
No 328
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.09 E-value=0.0043 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=21.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhc
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l 105 (537)
|+|.|++|+||||+++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 329
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.08 E-value=0.014 Score=61.37 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+.-.+|.||+|+|||++++.+.+...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Confidence 34588999999999999999998764
No 330
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.07 E-value=0.18 Score=58.94 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 60 FPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
+.|||.|+..|...+.....+.. -++|-|.+|.|||.+|+.|.+.....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 68999999999999987655433 48899999999999999999877644
No 331
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.04 Score=63.39 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=47.0
Q ss_pred HhhcCCChHHHHHHHHHHHcccCC----C--CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccc
Q 009352 56 LLSRFPGRRVQILELLRLLGTLNS----S--MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLS 116 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~~~----~--~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~ 116 (537)
+.++++|=++.+..++..+..+-. + ...+++.||.|+|||-+++++.+.+- ..++.|++.+
T Consensus 560 L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse 629 (898)
T KOG1051|consen 560 LHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE 629 (898)
T ss_pred HHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhh
Confidence 446789999999999998866432 1 12378999999999999999998863 3667777655
No 332
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.02 E-value=0.016 Score=61.80 Aligned_cols=79 Identities=28% Similarity=0.503 Sum_probs=60.7
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
..+.|+...+.++...+.-...+..+++|.|.+||||-.+++++=+... .+++++||... |..|++ +.|.||
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl--PesLlE---SELFGH 297 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL--PESLLE---SELFGH 297 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc--chHHHH---HHHhcc
Confidence 3578898999888888876555566899999999999999999887655 48999999764 344544 467788
Q ss_pred cccccCC
Q 009352 135 KKNAFNG 141 (537)
Q Consensus 135 ~~~~~~g 141 (537)
.+.+..|
T Consensus 298 eKGAFTG 304 (550)
T COG3604 298 EKGAFTG 304 (550)
T ss_pred ccccccc
Confidence 7665554
No 333
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.02 E-value=0.013 Score=66.05 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+.|...+...+.. .+.++|+||||||||+++..++.++
T Consensus 160 ~~Q~~Av~~~l~~----~~~~lI~GpPGTGKT~t~~~ii~~~ 197 (637)
T TIGR00376 160 ESQKEAVSFALSS----KDLFLIHGPPGTGKTRTLVELIRQL 197 (637)
T ss_pred HHHHHHHHHHhcC----CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3556666665543 3568899999999999888888664
No 334
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.01 E-value=0.006 Score=57.15 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=26.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~i 112 (537)
+..|++.|+||+||||+++.+.+.++..++.+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 34689999999999999999999987665544
No 335
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.01 E-value=0.021 Score=52.37 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=26.8
Q ss_pred EEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc
Q 009352 189 MIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP 235 (537)
Q Consensus 189 ~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~ 235 (537)
.-+||+||+|.+..+.. ...+..+.+.... ..+..+|++|.+++
T Consensus 120 ~~~iViDE~h~l~~~~~-~~~~~~i~~~~~~--~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDETF-RAMLKSILRRLKR--FKNIQIILLSATLP 163 (169)
T ss_dssp ESEEEEETHHHHHHTTH-HHHHHHHHHHSHT--TTTSEEEEEESSST
T ss_pred ceeeccCcccccccccH-HHHHHHHHHHhcC--CCCCcEEEEeeCCC
Confidence 56788899999986321 2233333333222 23577888888765
No 336
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.98 E-value=0.016 Score=59.81 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=38.5
Q ss_pred ccCCCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 46 FGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 46 f~~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+...+++++++.+.=..-+.+...|...+.. ..+++|.|++|+||||++++++..+
T Consensus 117 ~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~----~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 117 KAVAIFTLDQYVERGIMTAAQREAIIAAVRA----HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCCCCCHHHHHhcCCCCHHHHHHHHHHHHc----CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3445567777654322234455555555543 5789999999999999999999874
No 337
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.98 E-value=0.044 Score=60.35 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=39.9
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh-c---CCCeEEEeccccCCHHHHHHHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-L---SRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~-l---~~~~~~inc~~~~s~~~l~~~I 127 (537)
|=.+++.....+..++|+|+||+|||+++.+++.+ + +.+.+||++.+ ++..+.+..
T Consensus 20 LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee--~~~~i~~~~ 79 (509)
T PRK09302 20 FDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE--SPEDIIRNV 79 (509)
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC--CHHHHHHHH
Confidence 33446544445567999999999999999887743 2 46889998865 666666554
No 338
>PRK07261 topology modulation protein; Provisional
Probab=95.97 E-value=0.0072 Score=56.56 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=27.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+|.|++|+||||+++.+.+.++.+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 37899999999999999999988877665543
No 339
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.97 E-value=0.24 Score=50.90 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=18.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
..++|+|++|||||+++.+++..
T Consensus 24 ~r~vL~G~~GsGKS~~L~q~~~~ 46 (309)
T PF10236_consen 24 NRYVLTGERGSGKSVLLAQAVHY 46 (309)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999777777643
No 340
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.96 E-value=0.014 Score=51.54 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=32.5
Q ss_pred HhhcCCChHH----HHHHHHHHHcccCCCCCC--eEEECCCCCCHHHHHHHHHHhc
Q 009352 56 LLSRFPGRRV----QILELLRLLGTLNSSMPP--LFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 56 l~~~~~~Re~----qi~~L~~ll~~~~~~~~~--l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+.+.+.|=.- .+..|...+... .+..| +-+||++|||||.+.+.+++++
T Consensus 23 L~~~l~GQhla~~~v~~ai~~~l~~~-~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 23 LQRNLFGQHLAVEVVVNAIKGHLANP-NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHcCC-CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3445555544 445555555442 23334 4589999999999999999885
No 341
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.95 E-value=0.0071 Score=56.80 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=24.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
|+|.|+||+||||+++.+.+.++. .+|+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEEC
Confidence 689999999999999999999874 44554
No 342
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.95 E-value=0.037 Score=63.16 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=36.6
Q ss_pred HHHHHHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCH
Q 009352 69 ELLRLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSP 120 (537)
Q Consensus 69 ~L~~ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc~~~~s~ 120 (537)
.|=.+|+ .....+..+.|+|++|||||+++..++.. .+.+.+||+..+...+
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~ 102 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP 102 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhH
Confidence 3444565 44444556889999999999999876643 3568899987665543
No 343
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.95 E-value=0.021 Score=65.57 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+.--++|...+..++.. .+..+|.|+||||||++++.+.+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s----~~~~il~G~aGTGKTtll~~i~~~~~ 393 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS----GDIAVVVGRAGTGKSTMLKAAREAWE 393 (744)
T ss_pred CCCCHHHHHHHHHHhcC----CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 33446777777766643 34678999999999999999987653
No 344
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.95 E-value=0.019 Score=58.98 Aligned_cols=56 Identities=25% Similarity=0.314 Sum_probs=40.6
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHHHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---------~~~~~~inc~~~~s~~~l~~ 125 (537)
+-.+|+.....+..+.|+|+||+|||+++..++-.. +.+++||++.+..++..+.+
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 344555543444457899999999999999888552 24899999988777766543
No 345
>PRK06762 hypothetical protein; Provisional
Probab=95.95 E-value=0.0087 Score=55.34 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.+.|.|++|+||||+++.+.+.++..+++++.
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 47899999999999999999998656666653
No 346
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.93 E-value=0.011 Score=56.86 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=19.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.++++|.|.+|+|||++++.++..+
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l 62 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSL 62 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCccHHHHHHHHHH
Confidence 4589999999999999999988765
No 347
>PRK10646 ADP-binding protein; Provisional
Probab=95.93 E-value=0.014 Score=53.38 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
+++..+|...|.....++..|++.|.=|+|||++++.+++.|+.
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46778888888776666667899999999999999999999985
No 348
>PRK00625 shikimate kinase; Provisional
Probab=95.92 E-value=0.0075 Score=56.62 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=26.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~in 113 (537)
+|+|.|+||+||||+.+.+.+.++.+++-++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999987665443
No 349
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.92 E-value=0.017 Score=64.79 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=54.3
Q ss_pred HHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC----CeEEEeccccCCHHHHHHHHHHH
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR----PFVYTSCLSCYSPRILFESILNQ 130 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~----~~~~inc~~~~s~~~l~~~Il~~ 130 (537)
.+.+++.|.++.+..|...+.. .+.++|+||||||||++++.+.+.+.. .+.++.. ..-+.+.++..++.+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----RRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 3456788989988888887765 358999999999999999999988763 2333322 334677788877765
Q ss_pred Hhh
Q 009352 131 LLL 133 (537)
Q Consensus 131 L~~ 133 (537)
++.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 543
No 350
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.91 E-value=0.0082 Score=54.45 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=24.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
+|+|+|++|+|||++++.+.+.++.+++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999976544
No 351
>PRK14530 adenylate kinase; Provisional
Probab=95.90 E-value=0.0079 Score=58.34 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=25.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
+.|+|.|+||+||||+++.+.+.++.+++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 56999999999999999999999975544
No 352
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.89 E-value=0.021 Score=56.94 Aligned_cols=68 Identities=21% Similarity=0.375 Sum_probs=43.7
Q ss_pred ChhHHhhcCCChHHHHHHHHHHHccc-CCCCCCeEEECCCCCCHHHHHHHHHHh------cCCCeEEEeccccCC
Q 009352 52 SLDDLLSRFPGRRVQILELLRLLGTL-NSSMPPLFVYGSASTGKTSIIIQVFRH------LSRPFVYTSCLSCYS 119 (537)
Q Consensus 52 ~~~~l~~~~~~Re~qi~~L~~ll~~~-~~~~~~l~I~G~~GtGKTsiv~~vl~~------l~~~~~~inc~~~~s 119 (537)
+++.+.+-+..|.........-+... +.+..|+++.||+|.|||.+++.+.+. +.-+++.|||.+...
T Consensus 178 tl~~lksgiatrnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg 252 (531)
T COG4650 178 TLDFLKSGIATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG 252 (531)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC
Confidence 34444444544444433333322221 123568999999999999999998753 446899999987653
No 353
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.88 E-value=0.054 Score=64.87 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=38.8
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCC-eEEEeccc--cCCHHHHHHHHHHHHh
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRP-FVYTSCLS--CYSPRILFESILNQLL 132 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~-~~~inc~~--~~s~~~l~~~Il~~L~ 132 (537)
...+|...+.. ...++|.|++||||||.+=.++-+++.. ...|-|.+ ....+.+-++|...+.
T Consensus 78 ~r~~Il~ai~~----~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~ 143 (1294)
T PRK11131 78 KKQDILEAIRD----HQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELE 143 (1294)
T ss_pred HHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHh
Confidence 34556666654 4578999999999999888777666532 22344432 1223455555655553
No 354
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=95.86 E-value=0.09 Score=56.50 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
..+++|+|.+||||+++++.+-.... .+++.+||....
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~ 202 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN 202 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC
Confidence 45799999999999999999876543 489999998643
No 355
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.84 E-value=0.01 Score=64.98 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=42.3
Q ss_pred hcCCChHHHHHHHHHHHcccCC----CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 58 SRFPGRRVQILELLRLLGTLNS----SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~----~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
+.++|=++.+.++..++..... ..+.+++.||||+|||++++.+.+.+..--+|
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y 133 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIY 133 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcce
Confidence 4578999999999998844322 34568999999999999999999988743344
No 356
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.84 E-value=0.012 Score=57.08 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFR 103 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~ 103 (537)
+.++|+||.|+|||++++.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4589999999999999999873
No 357
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.82 E-value=0.0064 Score=56.80 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+++|+|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999999998
No 358
>PRK06217 hypothetical protein; Validated
Probab=95.81 E-value=0.0095 Score=56.26 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=26.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~in 113 (537)
.|+|.|++|+||||+.+.+.+.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999987765543
No 359
>PRK06547 hypothetical protein; Provisional
Probab=95.79 E-value=0.011 Score=55.38 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|.|.|++|+|||++++.+.+.++.+++
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4789999999999999999999875544
No 360
>PRK04040 adenylate kinase; Provisional
Probab=95.78 E-value=0.01 Score=56.47 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=25.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.++|+|+||+||||+++.+.+.+...+.+++.
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 48899999999999999999998423444544
No 361
>PRK14532 adenylate kinase; Provisional
Probab=95.76 E-value=0.0088 Score=56.55 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=23.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
+|+|.|+||+||||+.+.+.+.++..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~ 28 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ 28 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 489999999999999999999987543
No 362
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.75 E-value=0.12 Score=48.81 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-------------CCCeEEEeccccCCHHHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL-------------SRPFVYTSCLSCYSPRILFESIL 128 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l-------------~~~~~~inc~~~~s~~~l~~~Il 128 (537)
+...+|+|++|+|||+++..++..+ +.++.||++..- ...+..++.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 3458999999999999999888653 237888887543 444444443
No 363
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.71 E-value=0.024 Score=58.85 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=36.6
Q ss_pred hcCCChHHHHHHHHH-HHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 58 SRFPGRRVQILELLR-LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~-ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..+.|.+..++.|.- ++.+ +..+++++|+||||||++++.+...+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~---~~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP---GIGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc---CCCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 347788888887764 4433 246799999999999999999999885
No 364
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.68 E-value=0.032 Score=65.47 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
-++|...+..++.. ....+|.|++|||||++++.+.+.+
T Consensus 348 s~eQr~Av~~il~s----~~v~vv~G~AGTGKTT~l~~~~~~~ 386 (988)
T PRK13889 348 SGEQADALAHVTDG----RDLGVVVGYAGTGKSAMLGVAREAW 386 (988)
T ss_pred CHHHHHHHHHHhcC----CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 45666666665543 2357899999999999998877654
No 365
>PRK13949 shikimate kinase; Provisional
Probab=95.68 E-value=0.011 Score=55.25 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=26.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
..|+|.|++|+|||++.+.+.+.++.+++-
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 368999999999999999999999866544
No 366
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.68 E-value=0.084 Score=57.79 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=39.0
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh----cCCCeEEEeccccCCHHHHHHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH----LSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~----l~~~~~~inc~~~~s~~~l~~~ 126 (537)
|=.+++.....+..++|.|+||||||+++.+++-+ .+.+.+||...+ ++..+.+.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CHHHHHHH
Confidence 33445544444567999999999999999998754 256899998753 56665544
No 367
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.67 E-value=0.011 Score=55.43 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
.+.++|.|+||+||||+++.+.+.++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4568999999999999999999998644
No 368
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.65 E-value=0.052 Score=54.25 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=60.7
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHHHHHHHHHHhhccccccC
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFN 140 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---------~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~ 140 (537)
|=.+|+..+..+.-.=|+|+||+|||.++..++-.. +..++||++...+++..+.+ |+...........+
T Consensus 27 lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~l~ 105 (256)
T PF08423_consen 27 LDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEILD 105 (256)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHHHH
T ss_pred HHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccccccchhhh
Confidence 333454433333334599999999998887776332 34699999988888766543 44332110000000
Q ss_pred CCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccc
Q 009352 141 GYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR 201 (537)
Q Consensus 141 g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~ 201 (537)
.+ ...+|-+..++...+..+... +. ..+.-+||||.+-.+.
T Consensus 106 ~I-~v~~~~~~~~l~~~L~~l~~~----l~---------------~~~ikLIVIDSIaalf 146 (256)
T PF08423_consen 106 NI-FVIRVFDLEELLELLEQLPKL----LS---------------ESKIKLIVIDSIAALF 146 (256)
T ss_dssp TE-EEEE-SSHHHHHHHHHHHHHH----HH---------------HSCEEEEEEETSSHHH
T ss_pred ce-eeeecCCHHHHHHHHHHHHhh----cc---------------ccceEEEEecchHHHH
Confidence 01 123566666665555433221 11 1245688999999886
No 369
>PRK14531 adenylate kinase; Provisional
Probab=95.62 E-value=0.012 Score=55.66 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=25.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+|.|+||+||||+.+.+.+.++.. +|++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~--~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLR--HLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC--eEec
Confidence 48999999999999999999998755 4444
No 370
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.61 E-value=0.012 Score=52.68 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=25.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~i 112 (537)
|.|.|++|+|||++.+.+.+.++.+++..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 68999999999999999999998665443
No 371
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.61 E-value=0.027 Score=59.32 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.3
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.+.++||.|+.|||||.+++++.+.+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3457999999999999999999988754
No 372
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.58 E-value=0.11 Score=60.32 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHH-HHhc
Q 009352 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQV-FRHL 105 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~v-l~~l 105 (537)
+...+|...+.. ...++|.|++|||||+.+-.. ++..
T Consensus 5 ~~~~~i~~~l~~----~~~vIi~a~TGSGKTT~vpl~lL~~~ 42 (819)
T TIGR01970 5 AVLPALRDALAA----HPQVVLEAPPGAGKSTAVPLALLDAP 42 (819)
T ss_pred HHHHHHHHHHHc----CCcEEEECCCCCCHHHHHHHHHHHhh
Confidence 445666666654 468999999999999766554 4443
No 373
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.58 E-value=0.031 Score=66.22 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=48.5
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcccccc-CCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHS-NTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~-r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
..+||||||+..|... .+.++-..|.+|...-.-..+.+|+.++.+...... .+....+.+|-|.==++.+...||..
T Consensus 1140 P~IVVIIDE~AdLm~~-~~kevE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrtILd~ 1218 (1355)
T PRK10263 1140 PYIVVLVDEFADLMMT-VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 1218 (1355)
T ss_pred CeEEEEEcChHHHHhh-hhHHHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHHhcCC
Confidence 4579999999877631 223444445555544322357777777775322222 22233457899988899999999954
No 374
>PRK14528 adenylate kinase; Provisional
Probab=95.58 E-value=0.013 Score=55.64 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
..++|.||||+|||++++.+.+.++.+++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~i 30 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQI 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 46899999999999999999999875543
No 375
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=95.58 E-value=0.011 Score=58.85 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=44.3
Q ss_pred HhhcCCChHHHH---HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCCH
Q 009352 56 LLSRFPGRRVQI---LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYSP 120 (537)
Q Consensus 56 l~~~~~~Re~qi---~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~s~ 120 (537)
...-|+|-+... --+..++...--.++.+++.||||||||+++.++.++|+. +|+-....+.+|.
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~ 105 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSN 105 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhh
Confidence 344555554433 2345555554345678999999999999999999999984 6665555555543
No 376
>COG1672 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.56 E-value=0.028 Score=58.88 Aligned_cols=56 Identities=21% Similarity=0.433 Sum_probs=45.9
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
..|.+||.|+.+|...+... +...++|||+..+|||++++.+++.....+.++.+.
T Consensus 2 ~~f~dRE~El~~L~~~~~~~--~~~~~~i~G~rrvGKTsLl~~~~~~~~~~~~~~~~~ 57 (359)
T COG1672 2 MKFFDREKELEELLKIIESE--PPSIVFIYGRRRVGKTSLLKEFIKEKLGIYILVDFY 57 (359)
T ss_pred cchhhHHHHHHHHHHHHhcC--CCeEEEEEcccccCHHHHHHHHHhcCCCcceEEEee
Confidence 35899999999999999762 111389999999999999999999888776676554
No 377
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.54 E-value=0.089 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.6
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
|||||.-|||||.++-.+...+.
T Consensus 117 lYlYG~VGcGKTmLMDlFy~~~~ 139 (467)
T KOG2383|consen 117 LYLYGSVGCGKTMLMDLFYDALP 139 (467)
T ss_pred EEEecccCcchhHHHHHHhhcCC
Confidence 99999999999999998887654
No 378
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.54 E-value=0.013 Score=55.52 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=23.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.|+|.|+||+|||++++.+.+.++..+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~ 27 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPH 27 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 379999999999999999999986443
No 379
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.50 E-value=0.023 Score=58.73 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=50.7
Q ss_pred hcCCChHHHHHHHHHHHcccCCCC----CCeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSM----PPLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRIL 123 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~----~~l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l 123 (537)
+.|+|=++.+.+|.+++.....+. ..+++.||+|+|||++++.+.+.+..-. +..-|...-.|=+|
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L 132 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHL 132 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhh
Confidence 478999999999999998876532 3589999999999999999998887433 33456665555433
No 380
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.48 E-value=0.029 Score=53.14 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.+...|...+.. +..+.|.|++|+||||+++.++..+.
T Consensus 13 ~~~~~l~~~v~~----g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 13 LQAAYLWLAVEA----RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHhC----CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444455544443 66899999999999999999998765
No 381
>PHA00729 NTP-binding motif containing protein
Probab=95.47 E-value=0.01 Score=57.83 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.+++|+|+||||||+++..+++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 382
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.47 E-value=0.051 Score=66.56 Aligned_cols=141 Identities=23% Similarity=0.286 Sum_probs=87.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVRE 160 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~ 160 (537)
.-+++|-||+|+|||+++..+.+.++.+++.||-.++.+.+.+... -... .+|-. .+.+ -.
T Consensus 440 ~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~---y~~~-----~~g~l------~fre-----g~ 500 (1856)
T KOG1808|consen 440 KFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGT---YVAD-----DNGDL------VFRE-----GV 500 (1856)
T ss_pred CCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHh---hhcC-----CCCCe------eeeh-----hH
Confidence 3589999999999999999999999999999998887775544321 1111 11110 0101 01
Q ss_pred HHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcC---CCcEEEE---------
Q 009352 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK---MPEVGMI--------- 228 (537)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~---~~~l~vI--------- 228 (537)
+. ..+ .+..++||||+..- +.++|.+|-|+.+.-. +|+.+-+
T Consensus 501 LV----~Al-----------------r~G~~~vlD~lnla-----~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~l 554 (1856)
T KOG1808|consen 501 LV----QAL-----------------RNGDWIVLDELNLA-----PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFML 554 (1856)
T ss_pred HH----HHH-----------------HhCCEEEecccccc-----chHHHHHHHhhhhhhccccccccceeeccCcchhh
Confidence 11 111 13468899999844 3678889988866511 3333222
Q ss_pred EEeCCCcccc-----ccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 229 FISSTSPDTY-----HSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 229 ~Is~~~~~~f-----~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
|.+..++..+ +.|.....+..++|-...++++.+|+..
T Consensus 555 fatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 555 FATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEELEEILEH 597 (1856)
T ss_pred hhhccCccccchhhhhhhcccccchhhhhhhcCchhhhhhhcc
Confidence 2333333222 2333223446889999999999999953
No 383
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.44 E-value=0.024 Score=44.50 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=23.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC-CCeEEE
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLS-RPFVYT 112 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~-~~~~~i 112 (537)
+.|.|++|+|||++++.+.+.++ ..+.++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 67899999999999999999862 344444
No 384
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.035 Score=54.32 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=32.7
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCC
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~ 234 (537)
+|-+||+||.-.-.+.-....+|..|..+.+- .++++||||.+.
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~---~~lt~l~IsHdl 202 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKE---RGLTYLFISHDL 202 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHh---cCceEEEEeCcH
Confidence 56799999987666533335677777777765 479999999985
No 385
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.38 E-value=0.013 Score=55.60 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..++|.||+|+|||++++.+++...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34589999999999999999999864
No 386
>PRK02496 adk adenylate kinase; Provisional
Probab=95.37 E-value=0.016 Score=54.54 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=24.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
.++|.|+||+||||+++.+.+.++.+++.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 37899999999999999999998755443
No 387
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.37 E-value=0.066 Score=48.61 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
-.+++..++...+.....++..|++.|+=|.||||+++.+++.|+.
T Consensus 6 ~~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 6 PDEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 3467888888888887666778999999999999999999999984
No 388
>PLN02674 adenylate kinase
Probab=95.34 E-value=0.028 Score=55.63 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=26.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.+.|+|.||||+||||+.+.+.+.++. .+|++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~--~his~ 62 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCL--CHLAT 62 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC--cEEch
Confidence 356999999999999999999999874 44443
No 389
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.31 E-value=0.016 Score=52.48 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=26.7
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~ 118 (537)
++|.|+||+||||+.+.+.+.++. .++++....
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~--~~i~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA--PFIDGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC--EEEeCcccc
Confidence 689999999999999999998764 456665544
No 390
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=95.30 E-value=0.08 Score=61.41 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHH-HHHHh
Q 009352 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII-QVFRH 104 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~-~vl~~ 104 (537)
+...+|.+.+.. ...++|.|++|||||+.+- .+++.
T Consensus 8 ~~~~~i~~~l~~----~~~vvv~A~TGSGKTt~~pl~lL~~ 44 (812)
T PRK11664 8 AVLPELLTALKT----APQVLLKAPTGAGKSTWLPLQLLQH 44 (812)
T ss_pred HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHc
Confidence 556677777755 4679999999999997665 44443
No 391
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.30 E-value=0.017 Score=58.19 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=21.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~in 113 (537)
|-|+|+|.||+|||++++.+.+.+. ..+++|+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4589999999999999999998754 4556665
No 392
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.27 E-value=0.016 Score=53.30 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=25.7
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
++|.||+|+||||+++.+.+.++ ..+++-...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG--AKFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC--CeEEeCccc
Confidence 57899999999999999999987 445554443
No 393
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.26 E-value=0.019 Score=53.53 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~in 113 (537)
++|++.|++|+||||+-+.+.+.|+.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999998876543
No 394
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.26 E-value=0.42 Score=44.19 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=32.4
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCC
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNT 242 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~ 242 (537)
..=+|||||+-...+.+- --...++.+.+.-+ +++.||+.+...|+.+....
T Consensus 95 ~~dLlVLDEi~~a~~~gl--i~~~~v~~ll~~rp-~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 95 EYDLVILDEINYALGYGL--LDVEEVVDLLKAKP-EDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred CCCEEEEechHhHhhCCC--CCHHHHHHHHHcCC-CCCEEEEECCCCCHHHHHhC
Confidence 445889999988865321 01123344434332 56899999999887775443
No 395
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.26 E-value=0.052 Score=64.22 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
--++|...+..+... .+..+|.|++|||||++++.+.+.+.
T Consensus 382 Ls~eQ~~Av~~i~~~----~r~~~v~G~AGTGKTt~l~~~~~~~e 422 (1102)
T PRK13826 382 LSDEQKTAIEHVAGP----ARIAAVVGRAGAGKTTMMKAAREAWE 422 (1102)
T ss_pred CCHHHHHHHHHHhcc----CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344666665554322 45689999999999999999987553
No 396
>PRK07667 uridine kinase; Provisional
Probab=95.25 E-value=0.037 Score=52.78 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=34.8
Q ss_pred HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 68 LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 68 ~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
+.|..++.........|.|.|++|+||||+++.+.+.++ .++..+.....+
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYI 57 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCccc
Confidence 345555654322223467999999999999999998874 456666665544
No 397
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.22 E-value=0.019 Score=55.47 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=23.7
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
|+|.|+||+||||+++.+.+.++..++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i 28 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI 28 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 789999999999999999998875443
No 398
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.21 E-value=0.019 Score=55.68 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+|+|+||+||||+++.+.+.++. .++++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~--~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI--PHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cEEEC
Confidence 3799999999999999999999874 44554
No 399
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.19 E-value=0.015 Score=60.59 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..++........+++|.|++|+||||++++++..+.
T Consensus 151 ~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 3444444444577899999999999999999998876
No 400
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.19 E-value=0.013 Score=54.04 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.1
Q ss_pred eEEECCCCCCHHHHHHHHHHh
Q 009352 84 LFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~ 104 (537)
|.|+|++||||||+++.+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 401
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.015 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.++|+|+||+||||++..+.+.|..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHh
Confidence 4899999999999999999988763
No 402
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.14 E-value=0.02 Score=56.24 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=25.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~i 112 (537)
.|+|.||||+||||+++.+.+.++.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999988655543
No 403
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.14 E-value=0.017 Score=50.91 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
|...+.....++..|+++|+=|+|||++++.+++.++.
T Consensus 4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33334333334567999999999999999999999974
No 404
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.13 E-value=0.012 Score=59.02 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=32.3
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
....+..+|........+++|.|++|+||||+++++++.+...
T Consensus 112 ~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred hHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 3345555555533346789999999999999999999987643
No 405
>PLN02165 adenylate isopentenyltransferase
Probab=95.11 E-value=0.063 Score=55.42 Aligned_cols=29 Identities=10% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
.+..++|.||+|+|||+++..+...++..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~e 70 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSE 70 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCc
Confidence 34568999999999999999999998743
No 406
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.10 E-value=0.019 Score=59.57 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=30.0
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
+..+|........+|+|.|++|+||||++++++..+..
T Consensus 149 ~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 149 IKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 34455444445679999999999999999999998863
No 407
>PLN02200 adenylate kinase family protein
Probab=95.09 E-value=0.025 Score=55.73 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=25.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
.++|.|+||+||||+.+.+.+.++.. +|++.
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g~~--his~g 75 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFGFK--HLSAG 75 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe--EEEcc
Confidence 37899999999999999999998754 45553
No 408
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.05 E-value=0.15 Score=52.49 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=45.0
Q ss_pred cccCCCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 45 VFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 45 ~f~~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
-|...|+++.++.+.=..-+.++..|...+.. ..+++|.|++|+|||+++.+++....
T Consensus 111 k~~~~~~t~~~l~~~gt~~~~~~ayL~~~ie~----~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 111 KFSDEPITPEDLIEYGTISPEQAAYLWLAIEA----RKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred cCCCCCCCHHHHhhcCCCCHHHHHHHHHHHHc----CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 55677788887776444555666666666654 67999999999999999999998876
No 409
>PRK08233 hypothetical protein; Provisional
Probab=95.03 E-value=0.028 Score=52.51 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=25.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC-CCeEEEecc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS-RPFVYTSCL 115 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~-~~~~~inc~ 115 (537)
.|.|.|++|+||||++..+.+.++ ..++..++.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 478999999999999999999986 334444443
No 410
>PRK13946 shikimate kinase; Provisional
Probab=95.03 E-value=0.025 Score=53.46 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
.+|+|.|++|+|||++.+.+.+.|+.+++-
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id 40 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLD 40 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeEC
Confidence 479999999999999999999999877543
No 411
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.02 E-value=0.15 Score=47.13 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=19.9
Q ss_pred ECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009352 87 YGSASTGKTSIIIQVFRHLSRPFVYT 112 (537)
Q Consensus 87 ~G~~GtGKTsiv~~vl~~l~~~~~~i 112 (537)
.+.+||||||+..++.+-.+. +..|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHv 29 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHV 29 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCcc
Confidence 578999999999999988762 4444
No 412
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.01 E-value=0.055 Score=54.06 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=37.9
Q ss_pred HHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHH
Q 009352 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~I 127 (537)
.+++.....+..++|+|+||||||+++.+++.+. +.+++||...+ ++..+++..
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~ 70 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENA 70 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHH
Confidence 3344434455679999999999999998888653 46899998654 445555443
No 413
>PRK13948 shikimate kinase; Provisional
Probab=94.98 E-value=0.028 Score=53.15 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
..+|++.|++|+||||+.+.+.+.++.+++-
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD 40 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFID 40 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 3569999999999999999999999877653
No 414
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.026 Score=53.27 Aligned_cols=28 Identities=18% Similarity=0.522 Sum_probs=24.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|+|-|+||+||||.++.+.+.++.+|+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999999765543
No 415
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.90 E-value=0.045 Score=52.61 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=27.5
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+.|=+...+.|.-... ++.+++++||||||||++++.+-.-|.
T Consensus 5 I~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp SSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 3444444444443332 245899999999999999999998775
No 416
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.85 E-value=0.029 Score=52.09 Aligned_cols=29 Identities=34% Similarity=0.611 Sum_probs=25.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.+|+|.|++|+|||++.+.+.+.++.+++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~ 31 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFV 31 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 36899999999999999999999987654
No 417
>PRK01184 hypothetical protein; Provisional
Probab=94.84 E-value=0.027 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.|+|.|+||+||||+.+ ++++++.++
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~ 28 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPV 28 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcE
Confidence 47899999999999876 778877544
No 418
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.83 E-value=0.035 Score=50.68 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=25.4
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l---~~~~~~in 113 (537)
++|.|+||+|||++++.+...+ +..+++++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999988 44566665
No 419
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.82 E-value=0.038 Score=52.09 Aligned_cols=32 Identities=16% Similarity=0.427 Sum_probs=27.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~i 112 (537)
..+++|.||+|+|||++++.+++..+..+.++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~ 33 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRV 33 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccc
Confidence 35789999999999999999999988766554
No 420
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.80 E-value=0.048 Score=54.76 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..-+.+++.|..++.. +...++|.|++|+||||+++++++.+.
T Consensus 62 lg~~~~~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 62 LGLKPENLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred cCCCHHHHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 44456777778777754 245699999999999999999998875
No 421
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.031 Score=52.55 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=22.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..++|.||+|+||||+++.+++..+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4578999999999999999999873
No 422
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=94.78 E-value=0.089 Score=58.93 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=29.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc 114 (537)
..+|+|.|++|||||++++.+.+.+.. +|+.+++
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~ 51 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPL 51 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCc
Confidence 568999999999999999999998764 5777765
No 423
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=94.78 E-value=0.032 Score=52.37 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+++|++++||||+++.+.+.+..++.++..
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~ 34 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSV 34 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEec
Confidence 58999999999999999999999988888764
No 424
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.75 E-value=0.029 Score=53.90 Aligned_cols=36 Identities=25% Similarity=0.578 Sum_probs=28.6
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s 119 (537)
++|.||+|||||.+.-.+.+.++.+++..+-++|+.
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 579999999999999999999999999999888875
No 425
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.73 E-value=0.033 Score=52.16 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=26.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
.+|+|.|++|+|||++.+.+.+.++.+++-
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd 34 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEE
Confidence 469999999999999999999998766543
No 426
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.73 E-value=0.18 Score=55.56 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccC--CHHHHHHHHHHHHhhccccccCCCCc--------cccC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCY--SPRILFESILNQLLLHKKNAFNGYSS--------AKRC 148 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~--s~~~l~~~Il~~L~~~~~~~~~g~~~--------~~r~ 148 (537)
...++|.|.+|+||||-+=+.|-+-+. .--.|-|.+-. .+-.+-.++...+...... +-||+. ...-
T Consensus 280 ~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~-eVGYsIRFEdcTSekTvl 358 (902)
T KOG0923|consen 280 HQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH-EVGYSIRFEDCTSEKTVL 358 (902)
T ss_pred CcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccc-ccceEEEeccccCcceee
Confidence 346899999999999999999987663 11114454321 1112233344444222211 234431 1111
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh-hhhhcCCCcEEE
Q 009352 149 EKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG-LSDILKMPEVGM 227 (537)
Q Consensus 149 ~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r-l~e~~~~~~l~v 227 (537)
.-+.| .. ++.+++.. ..-..--||++||++.=- -..++|..|.. +... -|.+.+
T Consensus 359 KYMTD-Gm----LlREfL~e---------------pdLasYSViiiDEAHERT---L~TDILfgLvKDIar~--RpdLKl 413 (902)
T KOG0923|consen 359 KYMTD-GM----LLREFLSE---------------PDLASYSVIIVDEAHERT---LHTDILFGLVKDIARF--RPDLKL 413 (902)
T ss_pred eeecc-hh----HHHHHhcc---------------ccccceeEEEeehhhhhh---hhhhHHHHHHHHHHhh--CCcceE
Confidence 11111 11 22222211 112234588889998432 22567666654 3333 378998
Q ss_pred EEEeCCCc-ccc---c------cCCCCCCCceeecCC
Q 009352 228 IFISSTSP-DTY---H------SNTGYVAPIHVYFPE 254 (537)
Q Consensus 228 I~Is~~~~-~~f---~------~r~~~~~p~~I~Fpp 254 (537)
++.|.+.. ++| + .-.|.+.|..|+|.+
T Consensus 414 lIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~ 450 (902)
T KOG0923|consen 414 LISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTK 450 (902)
T ss_pred EeeccccCHHHHHHhccCCcEEeccCcccceeeeccc
Confidence 88777653 333 2 112345666777743
No 427
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.71 E-value=0.17 Score=50.36 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=68.0
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEecccc--CCHH---HHHHHHHHHHhhccccccCCCCccccCCCch
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSC--YSPR---ILFESILNQLLLHKKNAFNGYSSAKRCEKPS 152 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~--~s~~---~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~ 152 (537)
.+-.+-|-|.+||||||+.+.++.-.+. --++.+.... .+.. .-...++..++.. +.....|. .-++
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~-~~~~~ryP-----helS 111 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLP-EEFLYRYP-----HELS 111 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCC-HHHhhcCC-----cccC
Confidence 4567899999999999999999987663 2344443322 1122 2233333333211 10001111 0111
Q ss_pred h-HHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEe
Q 009352 153 D-FVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFIS 231 (537)
Q Consensus 153 ~-f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is 231 (537)
. ...++ .+...+ .-++-+||.||.....+..-...++..|..+.+.. +++.+||+
T Consensus 112 GGQrQRi--~IARAL-------------------al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~---~lt~lFIs 167 (268)
T COG4608 112 GGQRQRI--GIARAL-------------------ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL---GLTYLFIS 167 (268)
T ss_pred chhhhhH--HHHHHH-------------------hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHh---CCeEEEEE
Confidence 0 00001 111111 12466889999997765322246777777777763 69999999
Q ss_pred CCC
Q 009352 232 STS 234 (537)
Q Consensus 232 ~~~ 234 (537)
.+.
T Consensus 168 HDL 170 (268)
T COG4608 168 HDL 170 (268)
T ss_pred EEH
Confidence 985
No 428
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.70 E-value=0.047 Score=55.62 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=32.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~ 118 (537)
+.++|.||+++|||.+.-.+++.++..++-++.++||
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvY 40 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVY 40 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhc
Confidence 3589999999999999999999999888888777665
No 429
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.69 E-value=0.039 Score=61.46 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=45.1
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC----CeEEEec
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR----PFVYTSC 114 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~----~~~~inc 114 (537)
+-.++.|.+..+.|..+..+....+-.|+|+|++|+||||+.+.+...++. .+.+++.
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~ 429 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG 429 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC
Confidence 346788888888888887665555456899999999999999999998874 3455543
No 430
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.69 E-value=0.033 Score=51.38 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=23.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
|.|+|++|+|||++++.+.+.++.+
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~ 27 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLK 27 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCc
Confidence 7899999999999999999998755
No 431
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.68 E-value=0.056 Score=54.45 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
..-|+|+||+|+||||++.+++++++.
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 456999999999999999999998773
No 432
>PRK04182 cytidylate kinase; Provisional
Probab=94.68 E-value=0.034 Score=51.75 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.|.|.|++|+|||++.+.+.+.++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~ 28 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKH 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 378999999999999999999988543
No 433
>PRK14527 adenylate kinase; Provisional
Probab=94.66 E-value=0.032 Score=52.99 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=24.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
..++|.||||+||||+++.+.+.++..+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~ 34 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKK 34 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 4589999999999999999999987543
No 434
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.66 E-value=0.059 Score=55.43 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=27.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
+..+|+|.|++|+|||++.+.+.+.++.+++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 4456999999999999999999999998766
No 435
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=94.63 E-value=0.043 Score=52.88 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=35.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc----cCCHHHHHHHHHHHHhhc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS----CYSPRILFESILNQLLLH 134 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~----~~s~~~l~~~Il~~L~~~ 134 (537)
.|.|+|..|+|||++.+.+.+.++.++ ++|.. .+.+..++..|...++..
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg~~v--idaD~i~~~l~~~~~~~~~i~~~fG~~ 61 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLNLNV--VCADTISREITKKPSVIKKIAEKFGDE 61 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeccHHHHHHHCchHHHHHHHHHhCHH
Confidence 378999999999999999998887664 44432 333344677777766543
No 436
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.62 E-value=0.036 Score=53.04 Aligned_cols=46 Identities=13% Similarity=0.266 Sum_probs=32.4
Q ss_pred eEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHHHHHH
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFESILN 129 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l-~~~~~~inc~~~~s~~~l~~~Il~ 129 (537)
+++-|+||+|||+++..++..+ ...+++||..+.....--|..+..
T Consensus 18 ~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~ 64 (199)
T PF06414_consen 18 IIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLK 64 (199)
T ss_dssp EEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhh
Confidence 7889999999999999999998 678899998775543223444433
No 437
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.55 E-value=0.056 Score=49.97 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHcccCCC--CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 63 RRVQILELLRLLGTLNSS--MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~--~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
|+.|.+.+..++...... .+..+|.+|+|+|||.++..++.++..+++++ |. + ..+.+...+.+
T Consensus 5 r~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~-~p---~-~~l~~Q~~~~~ 70 (184)
T PF04851_consen 5 RPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIV-AP---N-ISLLEQWYDEF 70 (184)
T ss_dssp -HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEE-ES---S-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEe-cC---H-HHHHHHHHHHH
Confidence 556666666655432222 46799999999999998888776665544444 32 2 35555555555
No 438
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.54 E-value=0.037 Score=56.39 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=26.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.+++.|+|||||||+++.+.+.+. .+.+++.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~-~~~~l~~ 34 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP-KAVNVNR 34 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC-CCEEEec
Confidence 478899999999999999999984 4566664
No 439
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.53 E-value=0.034 Score=52.57 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
..++|.||+|+||||+++.+...++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 368899999999999999998877643
No 440
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.53 E-value=0.037 Score=56.80 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=28.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
..++|.||+|+|||+++..+.++++..++..+++++
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 358999999999999999999998765544444433
No 441
>PLN02199 shikimate kinase
Probab=94.52 E-value=0.073 Score=53.98 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=32.4
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
++.....-+.+. -++.+|+|.|.+|+|||++.+.+.+.++.+++-
T Consensus 88 ~Lk~~a~~i~~~-l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fID 132 (303)
T PLN02199 88 ILKRKAEEVKPY-LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 132 (303)
T ss_pred HHHHHHHHHHHH-cCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 344444444332 124689999999999999999999999866543
No 442
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.48 E-value=0.75 Score=50.12 Aligned_cols=46 Identities=15% Similarity=0.396 Sum_probs=28.4
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcC-CCcEEEEEEeCCCc
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILK-MPEVGMIFISSTSP 235 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~ 235 (537)
..-+|||||+|.+.+|. .++-+.+.++..+.. .|++.+++.|.+++
T Consensus 127 ~i~~iViDEaH~i~~~g--~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~ 173 (470)
T TIGR00614 127 GITLIAVDEAHCISQWG--HDFRPDYKALGSLKQKFPNVPIMALTATAS 173 (470)
T ss_pred CcCEEEEeCCcccCccc--cccHHHHHHHHHHHHHcCCCceEEEecCCC
Confidence 45688999999998865 333333333322211 35777888877765
No 443
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=94.46 E-value=0.55 Score=44.51 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi 97 (537)
.+.-|...+-.++. +.+++|.+|+|+|||.+
T Consensus 22 ~~~~Q~~~~~~~~~-----~~~~li~~~TG~GKT~~ 52 (203)
T cd00268 22 PTPIQARAIPPLLS-----GRDVIGQAQTGSGKTAA 52 (203)
T ss_pred CCHHHHHHHHHHhc-----CCcEEEECCCCCcHHHH
Confidence 35566666655554 45899999999999965
No 444
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.46 E-value=0.28 Score=47.01 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=27.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s 119 (537)
.+.+.||+|+||||++-.++..+ +.++..|++...+-
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 37899999999999998888654 45777777766553
No 445
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.45 E-value=0.048 Score=50.93 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=26.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC---CeEEEe
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTS 113 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~---~~~~in 113 (537)
+..|++.|++|+||||+++.+.+.+.. .+++++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 346899999999999999999998862 355554
No 446
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.45 E-value=0.034 Score=52.06 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.++|.||+|+||||+++.+...++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999888753
No 447
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.42 E-value=0.043 Score=49.36 Aligned_cols=27 Identities=15% Similarity=0.471 Sum_probs=22.9
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
++|.||+|+|||++++.+++.+...+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~ 28 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFG 28 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccce
Confidence 689999999999999999998754433
No 448
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.22 Score=52.39 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=41.8
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEecccc
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSC 117 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~--~~~~~inc~~~ 117 (537)
-+.+|-+.|+...-++..++|-|.||.||||+..+++..+. .++.||..-+.
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES 131 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEES 131 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcC
Confidence 35666777887666677799999999999999999998764 37999987664
No 449
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.40 E-value=0.056 Score=52.96 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHcc----cC-CCCCC--eEEECCCCCCHHHHHHHHHHhcCC---CeEE-EeccccCCHH
Q 009352 62 GRRVQILELLRLLGT----LN-SSMPP--LFVYGSASTGKTSIIIQVFRHLSR---PFVY-TSCLSCYSPR 121 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~----~~-~~~~~--l~I~G~~GtGKTsiv~~vl~~l~~---~~~~-inc~~~~s~~ 121 (537)
.|+++++.++..|.. .. ...++ +.|.|++|+||||+++.+...+.. .+.. +.+...+.+.
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~ 77 (229)
T PRK09270 7 YRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDN 77 (229)
T ss_pred cChHhHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCH
Confidence 456666555444333 21 12233 679999999999999999988763 2223 6665555443
No 450
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=94.37 E-value=0.23 Score=57.47 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHH-Hhc--CCCeEEEecccc--CCHHHHHHHHHHHH
Q 009352 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF-RHL--SRPFVYTSCLSC--YSPRILFESILNQL 131 (537)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl-~~l--~~~~~~inc~~~--~s~~~l~~~Il~~L 131 (537)
.+++.+.+.. ...++|.|.+||||||-|=+++ +.. ..+.+.|-|.+- .++-.+.+++....
T Consensus 178 r~~Il~~i~~----~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER 243 (924)
T KOG0920|consen 178 RDTILDAIEE----NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKER 243 (924)
T ss_pred HHHHHHHHHh----CceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHh
Confidence 4555555554 4679999999999997765555 432 125555666653 34556677776665
No 451
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.37 E-value=0.049 Score=51.31 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=28.7
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYS 119 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s 119 (537)
|.|.|++|+|||++++.+.+.++ .+...|++...+-
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 67999999999999999999874 4666676655543
No 452
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.35 E-value=0.046 Score=52.43 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
.++|.|+||+||||+++.+.+.++..
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~~ 30 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAID 30 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCe
Confidence 47899999999999999999998754
No 453
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.31 E-value=0.047 Score=54.15 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=25.1
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~---~~~~~in 113 (537)
|++.|+||+||||+++.+.+.++ .++++++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 68999999999999999998874 4566664
No 454
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.30 E-value=0.039 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhc
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l 105 (537)
|+|.|++|+||||+++.++..-
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999654
No 455
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.28 E-value=0.062 Score=54.98 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009352 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (537)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~ 115 (537)
...+..-+.........+.|.|++|+||||++..+...+ +.++..|.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 344444444433344568899999999999999988765 4466666654
No 456
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=94.27 E-value=0.054 Score=63.40 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=54.2
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
..+|||+||+.-|... .+.++-..+.+|...-.-..+.+|+.++.+..+....+....|..|-|.-.++.+-..|+.
T Consensus 639 P~iviiiDe~adlm~~-~~k~ve~~i~rLa~~ara~GIHlilatqRps~dVit~ikanipsrIaf~v~s~~dsr~il~ 715 (858)
T COG1674 639 PYIVIIIDEYADLMMV-AGKELEELIARLAQKGRAAGIHLILATQRPSVDVITGIKANIPTRIALRLSSKIDSRLILG 715 (858)
T ss_pred CeEEEEEcchHHHhhh-hhHHHHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHhCCcceEEEEEcCccceeeecc
Confidence 5789999999999753 3345777888876654334577777776653434333434466799999999999999985
No 457
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=94.24 E-value=0.038 Score=60.18 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=18.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
....|+||||||||.++..++.+
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~q 224 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEIISQ 224 (649)
T ss_pred CceEeeCCCCCCceeeHHHHHHH
Confidence 56889999999999766666654
No 458
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.22 E-value=0.034 Score=50.63 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.0
Q ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 86 VYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 86 I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
|.||||+||||+++.+.+.++ +++|++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceech
Confidence 689999999999999999986 456654
No 459
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=94.19 E-value=0.28 Score=54.25 Aligned_cols=146 Identities=20% Similarity=0.192 Sum_probs=75.5
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-CeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-PFVYTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~-~~~~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
+.+|-. +.-++|...+.. ...++|.|.+|+||||-+-+++.+-+. ..-.|-|.+-. |..--++...++.+..
T Consensus 48 ~~LPI~-~~r~~il~~ve~----nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPR--RVAavslA~RVAeE~~ 120 (674)
T KOG0922|consen 48 ESLPIY-KYRDQILYAVED----NQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPR--RVAAVSLAKRVAEEMG 120 (674)
T ss_pred ccCCHH-HHHHHHHHHHHH----CCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCc--hHHHHHHHHHHHHHhC
Confidence 334433 334556666655 457999999999999999999987663 11114444321 2333344444443322
Q ss_pred c---ccCCCCc--------cccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC
Q 009352 137 N---AFNGYSS--------AKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (537)
Q Consensus 137 ~---~~~g~~~--------~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~ 205 (537)
. ..-||+. .++-.-+.| ...|++++.. ..-.+--|||||||+.= .-
T Consensus 121 ~~lG~~VGY~IRFed~ts~~TrikymTD-G~LLRE~l~D-------------------p~LskYsvIIlDEAHER---sl 177 (674)
T KOG0922|consen 121 CQLGEEVGYTIRFEDSTSKDTRIKYMTD-GMLLREILKD-------------------PLLSKYSVIILDEAHER---SL 177 (674)
T ss_pred CCcCceeeeEEEecccCCCceeEEEecc-hHHHHHHhcC-------------------CccccccEEEEechhhh---hh
Confidence 1 1123321 111111112 1122222210 11224458899999942 22
Q ss_pred CCChHHHHHhh-hhhcCCCcEEEEEEeCCCc
Q 009352 206 SSSILPFLFGL-SDILKMPEVGMIFISSTSP 235 (537)
Q Consensus 206 ~~~lL~~L~rl-~e~~~~~~l~vI~Is~~~~ 235 (537)
..++|-.|++- ..- .+.+++|+.|.+..
T Consensus 178 ~TDiLlGlLKki~~~--R~~LklIimSATld 206 (674)
T KOG0922|consen 178 HTDILLGLLKKILKK--RPDLKLIIMSATLD 206 (674)
T ss_pred HHHHHHHHHHHHHhc--CCCceEEEEeeeec
Confidence 36777666653 222 35699999887753
No 460
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.19 E-value=0.051 Score=55.14 Aligned_cols=35 Identities=23% Similarity=0.579 Sum_probs=27.9
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~ 118 (537)
++|.||+|+|||+++..+.+.++..++.++.+++|
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY 36 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIY 36 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhee
Confidence 78999999999999999999987665544444443
No 461
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=94.17 E-value=0.097 Score=57.91 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.++..++|.|++|||||+++|++.---
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456789999999999999999998653
No 462
>PRK05748 replicative DNA helicase; Provisional
Probab=94.17 E-value=0.48 Score=51.31 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=38.6
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
.++.-++|-|.||+|||+++..++.+. +.+++|++.-. ++..+..+++....
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEm--s~~~l~~R~l~~~~ 256 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEM--GAESLVMRMLCAEG 256 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCC--CHHHHHHHHHHHhc
Confidence 344558999999999999999888653 45677776543 67788888876654
No 463
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=94.16 E-value=0.23 Score=53.96 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH-HHHHHHhcC
Q 009352 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHLS 106 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi-v~~vl~~l~ 106 (537)
-|...+-.++. +..+++.+|+|||||++ +..+++.+.
T Consensus 30 iQ~~ai~~~l~-----g~dvi~~a~TGsGKT~a~~lpil~~l~ 67 (460)
T PRK11776 30 IQAQSLPAILA-----GKDVIAQAKTGSGKTAAFGLGLLQKLD 67 (460)
T ss_pred HHHHHHHHHhc-----CCCEEEECCCCCcHHHHHHHHHHHHhh
Confidence 44444544443 45799999999999954 455555553
No 464
>PRK06761 hypothetical protein; Provisional
Probab=94.15 E-value=0.054 Score=54.77 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=26.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.++|.|++|+||||+++.+.+.+......+.+
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 48899999999999999999998755444444
No 465
>PRK05439 pantothenate kinase; Provisional
Probab=94.14 E-value=0.13 Score=52.77 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHH
Q 009352 69 ELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPR 121 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~s~~ 121 (537)
.+..+++....+.+. |.|.|+||+||||+++.+...++ ..+..|....++-+.
T Consensus 73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~ 131 (311)
T PRK05439 73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN 131 (311)
T ss_pred HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH
Confidence 344455432223333 67999999999999999988664 245666666665443
No 466
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.11 E-value=0.053 Score=41.76 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
...+|+|+.|+||||++.++.--|
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999887654
No 467
>PRK14526 adenylate kinase; Provisional
Probab=94.11 E-value=0.05 Score=52.73 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.++|.|+||+||||+.+.+.+.++..+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~ 28 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH 28 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 378999999999999999998887443
No 468
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.058 Score=52.21 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=27.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
|-|.|++|+||||+++.+.+.++...+.+-|.+.
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~ 44 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDD 44 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccc
Confidence 5699999999999999999999965555545443
No 469
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.07 E-value=1.1 Score=47.91 Aligned_cols=165 Identities=20% Similarity=0.277 Sum_probs=79.7
Q ss_pred ccCCCCChhHH-----hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-CCeEEEeccccCC
Q 009352 46 FGQEPISLDDL-----LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-RPFVYTSCLSCYS 119 (537)
Q Consensus 46 f~~~~~~~~~l-----~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~-~~~~~inc~~~~s 119 (537)
|.+.|++..+. ...+|--+.. .+...++.. ...+++.|.+|+|||+-+-+..-+.. ...--|.|.+-.
T Consensus 27 f~~~p~s~rY~~ilk~R~~LPvw~~k-~~F~~~l~~----nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQpr- 100 (699)
T KOG0925|consen 27 FNGKPYSQRYYDILKKRRELPVWEQK-EEFLKLLLN----NQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPR- 100 (699)
T ss_pred CCCCcCcHHHHHHHHHHhcCchHHhH-HHHHHHHhc----CceEEEEecCCCCccccCcHHHHHHHHhhccceeecCch-
Confidence 45556553322 2344544333 333333433 24689999999999986654442221 122335555432
Q ss_pred HHHHHHHHHHHHhhc---cccccCCCCc-cccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEe
Q 009352 120 PRILFESILNQLLLH---KKNAFNGYSS-AKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFD 195 (537)
Q Consensus 120 ~~~l~~~Il~~L~~~---~~~~~~g~~~-~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLD 195 (537)
|.---++...+++. .-..+-||+. -.-|.+...++.+.-+-+ + ++++.+ ...-++--|||||
T Consensus 101 -rvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgm---L--lrEams--------~p~l~~y~viiLD 166 (699)
T KOG0925|consen 101 -RVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGM---L--LREAMS--------DPLLGRYGVIILD 166 (699)
T ss_pred -HHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchH---H--HHHHhh--------CcccccccEEEec
Confidence 22223333333322 1112235542 123555555444332211 1 122211 1112345699999
Q ss_pred CCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCC
Q 009352 196 NFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (537)
Q Consensus 196 e~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~ 234 (537)
|++.=. -..++|..|++-.-.- .|.+.+|..|...
T Consensus 167 eahERt---lATDiLmGllk~v~~~-rpdLk~vvmSatl 201 (699)
T KOG0925|consen 167 EAHERT---LATDILMGLLKEVVRN-RPDLKLVVMSATL 201 (699)
T ss_pred hhhhhh---HHHHHHHHHHHHHHhh-CCCceEEEeeccc
Confidence 998432 2256666665532222 3789999988775
No 470
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=94.06 E-value=0.9 Score=51.25 Aligned_cols=32 Identities=19% Similarity=-0.030 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII 98 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv 98 (537)
-|..|..-+..++. +..+++.+|+|+|||.+.
T Consensus 26 ~r~~Q~~ai~~il~-----g~dvlv~apTGsGKTl~y 57 (607)
T PRK11057 26 FRPGQQEIIDAVLS-----GRDCLVVMPTGGGKSLCY 57 (607)
T ss_pred CCHHHHHHHHHHHc-----CCCEEEEcCCCchHHHHH
Confidence 45566666666654 357999999999999643
No 471
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.023 Score=56.33 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=47.3
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCC--CCCCceeecC--CCCHHHHHHH
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTG--YVAPIHVYFP--ECTEDDLRQI 263 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~--~~~p~~I~Fp--pYt~~el~~I 263 (537)
.--.|||||+|.+.+. .+=..+++++..++ |+..||++|.+.|...+..+. ...|..|... ..+-+-+.+.
T Consensus 169 ~vkmlVLDEaDemL~k----gfk~Qiydiyr~lp-~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf 243 (400)
T KOG0328|consen 169 AVKMLVLDEADEMLNK----GFKEQIYDIYRYLP-PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQF 243 (400)
T ss_pred ceeEEEeccHHHHHHh----hHHHHHHHHHHhCC-CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhh
Confidence 3458899999999862 33355667777765 689999999998876654333 2356666653 3344445555
Q ss_pred H
Q 009352 264 F 264 (537)
Q Consensus 264 L 264 (537)
.
T Consensus 244 ~ 244 (400)
T KOG0328|consen 244 F 244 (400)
T ss_pred e
Confidence 4
No 472
>PRK10867 signal recognition particle protein; Provisional
Probab=94.04 E-value=0.74 Score=49.54 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=36.4
Q ss_pred HHHHHHHcccCC------CCC-CeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCC
Q 009352 68 LELLRLLGTLNS------SMP-PLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYS 119 (537)
Q Consensus 68 ~~L~~ll~~~~~------~~~-~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s 119 (537)
++|..++++... ..| .+++.|++|+||||++..++..+ +.++..|+|.....
T Consensus 80 ~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 80 DELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred HHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 467777764211 123 37899999999999888887654 45788888876554
No 473
>PHA02774 E1; Provisional
Probab=94.02 E-value=0.12 Score=57.00 Aligned_cols=48 Identities=19% Similarity=0.370 Sum_probs=34.0
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCe-EEEec
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPF-VYTSC 114 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~-~~inc 114 (537)
.+..|..++... ....+++||||||||||.++.++++.|+.++ .+||.
T Consensus 420 fl~~lk~~l~~~-PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGI-PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 334555555331 1124699999999999999999999987544 55775
No 474
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.98 E-value=0.89 Score=48.88 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=36.4
Q ss_pred HHHHHHHcccCC-----C-CC-CeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCC
Q 009352 68 LELLRLLGTLNS-----S-MP-PLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYS 119 (537)
Q Consensus 68 ~~L~~ll~~~~~-----~-~~-~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s 119 (537)
++|..++++... . .| .+++.|++|+||||++..++..+ +.+++.|+|.....
T Consensus 79 ~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 79 EELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred HHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 556677765321 1 13 37899999999999988887664 35788888876543
No 475
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.93 E-value=0.084 Score=54.90 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=34.7
Q ss_pred cCCChHHHHHHH-HHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 59 RFPGRRVQILEL-LRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 59 ~~~~Re~qi~~L-~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.++|-++....| ..++.+ ....++|.|++|+|||++++.+...+..
T Consensus 5 ~ivgq~~~~~al~~~~~~~---~~g~vli~G~~G~gKttl~r~~~~~~~~ 51 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDP---KIGGVMVMGDRGTGKSTAVRALAALLPE 51 (337)
T ss_pred ccccHHHHHHHHHHHhcCC---CCCeEEEEcCCCCCHHHHHHHHHHhhcc
Confidence 456777777665 444544 2457999999999999999999988753
No 476
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=93.93 E-value=0.1 Score=53.35 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=25.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
+.|+|.||+|+|||.++-.+++..+ ..|||.
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~~~---eIIsaD 35 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKGKA---EIINVD 35 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC---cEEecc
Confidence 3589999999999999999999832 566764
No 477
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.92 E-value=0.05 Score=53.78 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=22.7
Q ss_pred EECCCCCCHHHHHHHHHHhcC---CCeEEEec
Q 009352 86 VYGSASTGKTSIIIQVFRHLS---RPFVYTSC 114 (537)
Q Consensus 86 I~G~~GtGKTsiv~~vl~~l~---~~~~~inc 114 (537)
|.||+|+||||.++.+-+.+. .+++.||.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEc
Confidence 679999999999999998765 57778874
No 478
>PHA02542 41 41 helicase; Provisional
Probab=93.91 E-value=0.37 Score=52.46 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=35.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
+.-++|-|.||+|||+++..++... +.+++++++-. +...+..+++...
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM--~~~ql~~Rl~a~~ 241 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEM--AEEVIAKRIDANL 241 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 3458899999999999999888654 45788887643 4455555555444
No 479
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.90 E-value=0.071 Score=49.72 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecc
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCL 115 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~ 115 (537)
+..++|.|++|+|||++.+.+...+. ..+.+++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 34688999999999999999998874 346667653
No 480
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.90 E-value=0.047 Score=52.31 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++|.||+|+||||+++.++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998875
No 481
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.88 E-value=0.59 Score=43.78 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCeEEECCCCCCHHHHHHHHH-Hhc--CCCeEEEe---ccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVF-RHL--SRPFVYTS---CLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl-~~l--~~~~~~in---c~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (537)
+-+.||+++|.|||+.+-.+. +.. +.++..+. ....+....+++.+ .+.-... ..|+... + ++..+-.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~--g~g~~~~-~-~~~~~~~ 79 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVM--GTGFTWE-T-QNREADT 79 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEEC--CCCCeec-C-CCcHHHH
Confidence 468899999999998776665 333 34555442 22223444455443 1111110 0111110 1 1112212
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChH--HHHHhhhhhcCCCcEEEEEEeCC
Q 009352 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSIL--PFLFGLSDILKMPEVGMIFISST 233 (537)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL--~~L~rl~e~~~~~~l~vI~Is~~ 233 (537)
...++.++...+.+. .+..=+|||||+-...+.+ ++ ..+..+.+.-+ +++.||+.+..
T Consensus 80 ~~~~~~~~~a~~~l~---------------~~~~DlvVLDEi~~A~~~g----li~~~~v~~lL~~rp-~~~evVlTGR~ 139 (173)
T TIGR00708 80 AIAKAAWQHAKEMLA---------------DPELDLVLLDELTYALKYG----YLDVEEVVEALQERP-GHQHVIITGRG 139 (173)
T ss_pred HHHHHHHHHHHHHHh---------------cCCCCEEEehhhHHHHHCC----CcCHHHHHHHHHhCC-CCCEEEEECCC
Confidence 223333333222221 2344588999998766532 11 12334434433 57899999999
Q ss_pred CccccccCC
Q 009352 234 SPDTYHSNT 242 (537)
Q Consensus 234 ~~~~f~~r~ 242 (537)
.|+.+....
T Consensus 140 ~p~~l~e~A 148 (173)
T TIGR00708 140 CPQDLLELA 148 (173)
T ss_pred CCHHHHHhC
Confidence 887765443
No 482
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.87 E-value=0.078 Score=51.01 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=27.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC-CeEEEecccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR-PFVYTSCLSC 117 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~-~~~~inc~~~ 117 (537)
.|.|.|++|+||||+++.+.+.++. .+.+++....
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 4789999999999999999999853 4556665443
No 483
>PLN02840 tRNA dimethylallyltransferase
Probab=93.85 E-value=0.065 Score=57.00 Aligned_cols=36 Identities=11% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
..|+|.||+|+|||+++..+.+.++..++.++.+++
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 348999999999999999999999876655554443
No 484
>PTZ00424 helicase 45; Provisional
Probab=93.83 E-value=0.5 Score=50.08 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHH-HHHHHhc
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL 105 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv-~~vl~~l 105 (537)
+.-|...+..++.. .++++.+|+|+|||.+. ..+++.+
T Consensus 52 ~~~Q~~ai~~i~~~-----~d~ii~apTGsGKT~~~~l~~l~~~ 90 (401)
T PTZ00424 52 SAIQQRGIKPILDG-----YDTIGQAQSGTGKTATFVIAALQLI 90 (401)
T ss_pred CHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHh
Confidence 55677777666643 47889999999999654 3444443
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.78 E-value=0.085 Score=50.26 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC-CCeEEEeccc
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLS-RPFVYTSCLS 116 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~-~~~~~inc~~ 116 (537)
+.|.|++|+||||+++.+...++ ....++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 57999999999999999999874 3445555544
No 486
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=93.77 E-value=0.27 Score=47.87 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=25.5
Q ss_pred eEEECCCCCCHHHHH---HHHHHhcCCCeEEEec
Q 009352 84 LFVYGSASTGKTSII---IQVFRHLSRPFVYTSC 114 (537)
Q Consensus 84 l~I~G~~GtGKTsiv---~~vl~~l~~~~~~inc 114 (537)
-+|.||||+||||-+ .+++++++++++.||.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNL 38 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNL 38 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEec
Confidence 478999999999765 5677888888888873
No 487
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.77 E-value=0.045 Score=53.28 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=20.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhc
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l 105 (537)
++|+|+||+|||+.++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999885
No 488
>PTZ00301 uridine kinase; Provisional
Probab=93.77 E-value=0.087 Score=51.06 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=25.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC----CCeEEEeccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS----RPFVYTSCLS 116 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~----~~~~~inc~~ 116 (537)
-|-|.|+||+||||+++.+.+++. ...+.+-|.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D 42 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICED 42 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence 367999999999999999887763 2334455554
No 489
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.77 E-value=0.068 Score=50.48 Aligned_cols=30 Identities=17% Similarity=0.511 Sum_probs=24.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
.+++|.||+|+||++++..+++.....+.+
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~ 32 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFER 32 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEe
Confidence 468999999999999999999986433333
No 490
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.76 E-value=0.083 Score=57.74 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+---++++..|..++.. +...++|+||+|+||||++.++++.+.
T Consensus 224 Lg~~~~~~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred cCCCHHHHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 33456777888887754 244689999999999999999998875
No 491
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.72 E-value=0.18 Score=54.40 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
+..=..+...+..++.. +..-++|+||+|+||||++-+++..++.
T Consensus 240 Lg~~~~~~~~~~~~~~~---p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 240 LGMSPFQLARLLRLLNR---PQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred hCCCHHHHHHHHHHHhC---CCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 33345666677777765 3556899999999999999999999874
No 492
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.72 E-value=0.06 Score=55.36 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=28.9
Q ss_pred HHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 71 LRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 71 ~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..+|.-....+.+++|.|++|+||||++++++..+.
T Consensus 134 ~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 134 KEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 344444445567899999999999999999998875
No 493
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.68 E-value=0.42 Score=52.96 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=73.3
Q ss_pred HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-CeEEEeccccCCH--HHHHHHHHHHHhhccccccCCCCc
Q 009352 68 LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-PFVYTSCLSCYSP--RILFESILNQLLLHKKNAFNGYSS 144 (537)
Q Consensus 68 ~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~-~~~~inc~~~~s~--~~l~~~Il~~L~~~~~~~~~g~~~ 144 (537)
++|..++.. ...|+|.|.+|+||||-+-+.|-+-+. ..-.|-|.+-.-. =.+-.++...+.+.... .-||+.
T Consensus 362 ~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~-~VGYsI 436 (1042)
T KOG0924|consen 362 DQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD-TVGYSI 436 (1042)
T ss_pred HHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc-ccceEE
Confidence 345566655 356899999999999888877755442 3334555442211 12223334444322221 234431
Q ss_pred -----cccCC---CchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhh
Q 009352 145 -----AKRCE---KPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (537)
Q Consensus 145 -----~~r~~---~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl 216 (537)
...+. -+.+ ...|+..|.. ..-.+.-|||+||++.=. -..++|..|++.
T Consensus 437 RFEdvT~~~T~IkymTD-GiLLrEsL~d-------------------~~L~kYSviImDEAHERs---lNtDilfGllk~ 493 (1042)
T KOG0924|consen 437 RFEDVTSEDTKIKYMTD-GILLRESLKD-------------------RDLDKYSVIIMDEAHERS---LNTDILFGLLKK 493 (1042)
T ss_pred EeeecCCCceeEEEecc-chHHHHHhhh-------------------hhhhheeEEEechhhhcc---cchHHHHHHHHH
Confidence 00110 1111 1122222211 012245688999998532 226788888775
Q ss_pred hhhcCCCcEEEEEEeCCCc-ccc
Q 009352 217 SDILKMPEVGMIFISSTSP-DTY 238 (537)
Q Consensus 217 ~e~~~~~~l~vI~Is~~~~-~~f 238 (537)
.-.- -.++.+|..|.++. ++|
T Consensus 494 ~lar-RrdlKliVtSATm~a~kf 515 (1042)
T KOG0924|consen 494 VLAR-RRDLKLIVTSATMDAQKF 515 (1042)
T ss_pred HHHh-hccceEEEeeccccHHHH
Confidence 4332 25799998887754 444
No 494
>PRK10436 hypothetical protein; Provisional
Probab=93.67 E-value=0.09 Score=56.99 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
+---+.++..+..++.. +...++|.||+|+||||++.++++++..
T Consensus 200 LG~~~~~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred cCcCHHHHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 44445677778777754 3567999999999999999999988753
No 495
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.66 E-value=0.052 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
|-|.|++|+||||+++.+...|+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999999987
No 496
>PRK01172 ski2-like helicase; Provisional
Probab=93.66 E-value=0.48 Score=54.14 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHH-HHhc--CCCeEEEe
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQV-FRHL--SRPFVYTS 113 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~v-l~~l--~~~~~~in 113 (537)
++-|.+-+..+.. +.+++|.+|+|+|||.+.... ++.+ +.+.+||.
T Consensus 24 ~~~Q~~ai~~l~~-----~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~ 72 (674)
T PRK01172 24 YDHQRMAIEQLRK-----GENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIV 72 (674)
T ss_pred CHHHHHHHHHHhc-----CCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEe
Confidence 5566666655432 458999999999999865433 3333 34566663
No 497
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.64 E-value=0.31 Score=47.97 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.9
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---------------CCCeEEEeccc
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL---------------SRPFVYTSCLS 116 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l---------------~~~~~~inc~~ 116 (537)
-+|.||+|+|||+++..++-.. +.+++|+++.+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 4799999999999999988542 23678888655
No 498
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.64 E-value=0.042 Score=53.56 Aligned_cols=29 Identities=31% Similarity=0.294 Sum_probs=21.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
.++|||+||+|||++++.+. .+...+++.
T Consensus 14 ~~liyG~~G~GKtt~a~~~~----~~~~~~~~d 42 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLP----GKTLVLSFD 42 (220)
T ss_pred EEEEECCCCCCHHHHHHhcC----CCCEEEecc
Confidence 48999999999999988763 344455543
No 499
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.61 E-value=0.065 Score=51.23 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=23.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..+.|.||+|+|||++++.++..++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999999875
No 500
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.61 E-value=0.3 Score=49.50 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=29.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc----C-CCeEEEeccccC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL----S-RPFVYTSCLSCY 118 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l----~-~~~~~inc~~~~ 118 (537)
.+.|.||+|+||||++..++..+ + .++.+|.+....
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 47899999999999999988765 3 578888877644
Done!