Query 009352
Match_columns 537
No_of_seqs 265 out of 1430
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 03:15:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3te6_A Regulatory protein SIR3 99.9 1.6E-22 5.3E-27 205.7 10.8 176 55-265 16-208 (318)
2 2v1u_A Cell division control p 99.8 1.3E-18 4.5E-23 180.5 13.8 231 43-303 3-253 (387)
3 2qby_B CDC6 homolog 3, cell di 99.7 2.3E-17 8E-22 171.5 17.9 223 45-304 6-250 (384)
4 2qby_A CDC6 homolog 1, cell di 99.7 6.5E-17 2.2E-21 167.5 14.3 229 45-304 6-250 (386)
5 1fnn_A CDC6P, cell division co 99.7 8.4E-17 2.9E-21 167.3 14.5 220 49-304 8-252 (389)
6 1w5s_A Origin recognition comp 99.7 6.3E-16 2.2E-20 162.1 14.9 231 42-302 5-269 (412)
7 2qen_A Walker-type ATPase; unk 99.4 9.6E-12 3.3E-16 126.8 18.5 181 56-266 10-214 (350)
8 1jbk_A CLPB protein; beta barr 99.4 1.4E-12 4.7E-17 120.7 10.5 152 58-264 22-194 (195)
9 2chg_A Replication factor C sm 99.4 9.9E-12 3.4E-16 117.7 16.1 185 58-303 17-208 (226)
10 4b4t_J 26S protease regulatory 99.4 2.2E-11 7.4E-16 126.9 19.0 160 58-266 148-330 (405)
11 1ofh_A ATP-dependent HSL prote 99.3 7.9E-12 2.7E-16 125.6 14.6 65 55-119 12-88 (310)
12 2fna_A Conserved hypothetical 99.3 6.2E-11 2.1E-15 121.0 20.2 177 56-265 11-219 (357)
13 4b4t_L 26S protease subunit RP 99.3 1.5E-10 5.2E-15 122.1 20.7 158 58-265 181-362 (437)
14 3eie_A Vacuolar protein sortin 99.3 3E-11 1E-15 123.1 14.6 160 58-266 18-195 (322)
15 1sxj_A Activator 1 95 kDa subu 99.3 6.6E-12 2.3E-16 136.3 10.2 167 58-266 39-220 (516)
16 3syl_A Protein CBBX; photosynt 99.3 2.3E-11 8E-16 122.5 13.0 194 58-303 31-259 (309)
17 3h4m_A Proteasome-activating n 99.3 2.1E-11 7E-16 121.6 12.3 160 57-266 16-199 (285)
18 3vfd_A Spastin; ATPase, microt 99.3 3.1E-11 1.1E-15 126.2 14.2 194 58-305 115-332 (389)
19 4b4t_I 26S protease regulatory 99.3 1.9E-10 6.5E-15 120.3 19.3 159 58-266 182-364 (437)
20 3uk6_A RUVB-like 2; hexameric 99.3 5.5E-11 1.9E-15 122.8 15.2 220 57-301 43-305 (368)
21 3hu3_A Transitional endoplasmi 99.2 5.3E-11 1.8E-15 128.1 14.6 160 58-267 204-384 (489)
22 4b4t_H 26S protease regulatory 99.2 1.4E-10 4.8E-15 122.3 17.0 159 58-265 209-390 (467)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.2 1.9E-10 6.5E-15 112.7 16.7 158 58-265 6-187 (262)
24 3u61_B DNA polymerase accessor 99.2 9.1E-11 3.1E-15 119.2 14.8 145 58-264 26-174 (324)
25 1d2n_A N-ethylmaleimide-sensit 99.2 8.6E-11 2.9E-15 116.5 14.1 193 57-300 32-243 (272)
26 3pfi_A Holliday junction ATP-d 99.2 1.3E-10 4.4E-15 118.8 14.8 177 58-302 29-230 (338)
27 1njg_A DNA polymerase III subu 99.2 1.5E-11 5.2E-16 117.7 7.3 202 58-302 23-231 (250)
28 4b4t_K 26S protease regulatory 99.2 1.8E-10 6.1E-15 121.4 15.9 159 58-265 172-354 (428)
29 4b4t_M 26S protease regulatory 99.2 1.2E-10 4E-15 122.9 14.4 158 58-265 181-362 (434)
30 1hqc_A RUVB; extended AAA-ATPa 99.2 1.2E-10 4E-15 118.1 14.0 181 58-302 12-214 (324)
31 3b9p_A CG5977-PA, isoform A; A 99.2 1.5E-10 5.2E-15 116.0 14.5 194 58-305 21-239 (297)
32 1xwi_A SKD1 protein; VPS4B, AA 99.2 6.4E-10 2.2E-14 113.4 18.9 157 58-266 12-190 (322)
33 3d8b_A Fidgetin-like protein 1 99.2 2.3E-10 7.9E-15 118.3 15.8 194 58-305 84-301 (357)
34 1sxj_B Activator 1 37 kDa subu 99.2 1.4E-10 4.9E-15 116.9 13.1 186 58-303 21-213 (323)
35 2qp9_X Vacuolar protein sortin 99.2 1.4E-10 4.7E-15 120.0 12.6 157 58-266 51-228 (355)
36 3cf0_A Transitional endoplasmi 99.2 2.9E-10 9.8E-15 114.8 14.6 158 58-265 15-196 (301)
37 1iqp_A RFCS; clamp loader, ext 99.2 2.2E-10 7.5E-15 115.8 13.6 185 58-303 25-216 (327)
38 4fcw_A Chaperone protein CLPB; 99.2 2.6E-10 8.7E-15 114.9 13.9 168 55-265 14-226 (311)
39 3hws_A ATP-dependent CLP prote 99.2 2.4E-10 8.2E-15 118.3 14.0 62 56-117 13-87 (363)
40 2chq_A Replication factor C sm 99.2 1.4E-10 4.7E-15 116.9 11.8 184 58-302 17-207 (319)
41 1l8q_A Chromosomal replication 99.1 3E-10 1E-14 115.5 12.5 177 68-302 24-211 (324)
42 2zan_A Vacuolar protein sortin 99.1 6.8E-10 2.3E-14 118.2 15.6 157 58-266 134-312 (444)
43 3pvs_A Replication-associated 99.1 6.9E-10 2.4E-14 118.1 14.2 179 58-301 26-217 (447)
44 1um8_A ATP-dependent CLP prote 99.1 2.1E-09 7.1E-14 111.7 16.9 63 56-118 19-109 (376)
45 1ojl_A Transcriptional regulat 99.1 1.3E-09 4.3E-14 110.3 13.8 159 59-264 3-186 (304)
46 1lv7_A FTSH; alpha/beta domain 99.0 1.9E-09 6.6E-14 105.7 14.3 159 58-266 12-193 (257)
47 1jr3_A DNA polymerase III subu 99.0 3.3E-10 1.1E-14 116.8 8.9 202 58-303 16-225 (373)
48 3cf2_A TER ATPase, transitiona 99.0 1.6E-09 5.6E-14 122.1 15.0 161 58-267 204-384 (806)
49 2p65_A Hypothetical protein PF 99.0 4.5E-10 1.6E-14 103.4 8.6 55 58-114 22-86 (187)
50 1sxj_D Activator 1 41 kDa subu 99.0 2.8E-09 9.7E-14 108.9 15.3 192 58-303 37-239 (353)
51 2ce7_A Cell division protein F 99.0 4.5E-09 1.5E-13 112.4 16.5 158 58-265 16-196 (476)
52 3pxi_A Negative regulator of g 99.0 3.1E-09 1.1E-13 120.5 13.9 154 55-265 488-672 (758)
53 3t15_A Ribulose bisphosphate c 98.9 1.1E-09 3.8E-14 110.1 8.5 136 83-266 38-196 (293)
54 2bjv_A PSP operon transcriptio 98.9 2.3E-09 7.9E-14 105.7 10.2 160 58-264 6-190 (265)
55 2c9o_A RUVB-like 1; hexameric 98.9 1.3E-08 4.3E-13 108.8 16.2 64 56-119 35-103 (456)
56 1sxj_E Activator 1 40 kDa subu 98.9 6.3E-09 2.2E-13 106.6 13.1 215 58-303 14-241 (354)
57 2z4s_A Chromosomal replication 98.9 3E-09 1E-13 113.1 10.5 194 53-302 100-309 (440)
58 1r6b_X CLPA protein; AAA+, N-t 98.9 5.7E-09 1.9E-13 118.4 12.9 167 56-265 456-663 (758)
59 2r62_A Cell division protease 98.9 7.9E-10 2.7E-14 109.1 5.1 38 81-118 44-81 (268)
60 1qvr_A CLPB protein; coiled co 98.9 4.4E-09 1.5E-13 120.8 11.9 157 58-265 170-342 (854)
61 3co5_A Putative two-component 98.9 4.9E-10 1.7E-14 100.3 2.7 57 59-116 5-61 (143)
62 1sxj_C Activator 1 40 kDa subu 98.9 3.1E-08 1.1E-12 101.3 15.3 149 59-265 26-179 (340)
63 3n70_A Transport activator; si 98.9 4.3E-09 1.5E-13 94.3 7.8 59 59-118 2-63 (145)
64 1a5t_A Delta prime, HOLB; zinc 98.8 3.3E-08 1.1E-12 101.1 14.8 170 60-266 4-178 (334)
65 3bos_A Putative DNA replicatio 98.8 2.6E-09 9E-14 102.6 5.7 173 64-302 37-220 (242)
66 1qvr_A CLPB protein; coiled co 98.8 1E-08 3.6E-13 117.7 10.9 65 55-119 555-629 (854)
67 2dhr_A FTSH; AAA+ protein, hex 98.8 4.3E-08 1.5E-12 105.4 15.0 60 58-117 31-100 (499)
68 1ixz_A ATP-dependent metallopr 98.8 3.3E-08 1.1E-12 96.7 12.9 57 59-115 17-83 (254)
69 2r44_A Uncharacterized protein 98.8 4.8E-09 1.6E-13 106.8 6.4 62 56-121 25-86 (331)
70 3cf2_A TER ATPase, transitiona 98.8 1E-08 3.6E-13 115.6 8.9 190 60-299 479-694 (806)
71 1iy2_A ATP-dependent metallopr 98.7 4.9E-08 1.7E-12 97.0 11.9 58 58-115 40-107 (278)
72 3pxg_A Negative regulator of g 98.7 3.2E-08 1.1E-12 105.9 11.0 56 58-115 180-245 (468)
73 3m6a_A ATP-dependent protease 98.7 5.1E-08 1.8E-12 106.3 11.8 163 57-266 80-264 (543)
74 1r6b_X CLPA protein; AAA+, N-t 98.7 1.1E-07 3.8E-12 107.7 14.8 159 58-265 186-359 (758)
75 1ypw_A Transitional endoplasmi 98.7 1.1E-07 3.7E-12 108.4 14.1 159 58-266 204-383 (806)
76 2gno_A DNA polymerase III, gam 98.7 6.4E-08 2.2E-12 97.8 10.0 142 64-266 3-150 (305)
77 1in4_A RUVB, holliday junction 98.6 2E-07 6.9E-12 95.2 13.3 57 58-114 25-84 (334)
78 3nbx_X ATPase RAVA; AAA+ ATPas 98.6 1.8E-07 6E-12 100.7 11.0 159 54-266 18-194 (500)
79 3pxi_A Negative regulator of g 98.6 1.2E-07 4.1E-12 107.5 9.9 46 58-105 180-225 (758)
80 1g41_A Heat shock protein HSLU 98.5 3.4E-06 1.1E-10 89.1 18.8 62 56-117 13-86 (444)
81 2x8a_A Nuclear valosin-contain 98.5 1.6E-06 5.3E-11 86.2 14.8 135 83-266 46-189 (274)
82 1ypw_A Transitional endoplasmi 98.5 1.4E-08 4.6E-13 115.8 -0.6 137 81-266 511-659 (806)
83 2w58_A DNAI, primosome compone 98.4 4E-07 1.4E-11 85.6 8.4 52 64-115 35-91 (202)
84 1z6t_A APAF-1, apoptotic prote 98.4 5.7E-06 2E-10 90.6 17.6 167 57-266 123-297 (591)
85 3ec2_A DNA replication protein 98.4 9.2E-07 3.2E-11 81.6 8.9 53 63-115 19-76 (180)
86 1g8p_A Magnesium-chelatase 38 98.3 1.2E-06 4.2E-11 89.1 10.1 46 59-106 25-70 (350)
87 2a5y_B CED-4; apoptosis; HET: 98.3 1.1E-05 3.8E-10 87.9 17.4 164 61-267 131-305 (549)
88 3sfz_A APAF-1, apoptotic pepti 98.2 1.8E-05 6.3E-10 93.5 16.1 164 58-266 124-297 (1249)
89 2qgz_A Helicase loader, putati 98.1 3.1E-06 1E-10 85.5 6.5 53 63-115 133-190 (308)
90 1vt4_I APAF-1 related killer D 98.1 1.2E-05 4.2E-10 92.2 11.6 170 60-267 130-310 (1221)
91 1ny5_A Transcriptional regulat 98.0 6.6E-05 2.2E-09 78.1 15.0 158 60-264 139-321 (387)
92 2kjq_A DNAA-related protein; s 98.0 6.7E-06 2.3E-10 73.9 5.9 37 80-116 35-74 (149)
93 4akg_A Glutathione S-transfera 97.9 4.6E-05 1.6E-09 95.8 13.5 140 81-265 1267-1428(2695)
94 3dzd_A Transcriptional regulat 97.9 5E-05 1.7E-09 78.5 11.2 159 59-264 130-312 (368)
95 3vkg_A Dynein heavy chain, cyt 97.7 0.00042 1.4E-08 87.9 16.1 140 81-264 1304-1465(3245)
96 2cvh_A DNA repair and recombin 97.6 0.00018 6.1E-09 67.7 8.8 53 72-124 11-63 (220)
97 2r2a_A Uncharacterized protein 97.5 3.4E-05 1.2E-09 72.8 3.2 35 83-117 7-50 (199)
98 4akg_A Glutathione S-transfera 97.5 0.00051 1.8E-08 86.4 14.1 53 65-121 633-685 (2695)
99 2vhj_A Ntpase P4, P4; non- hyd 97.5 0.00013 4.5E-09 73.5 6.5 34 81-114 123-156 (331)
100 1n0w_A DNA repair protein RAD5 97.3 0.00086 2.9E-08 64.0 9.9 52 72-123 15-75 (243)
101 3f9v_A Minichromosome maintena 97.2 6.6E-05 2.3E-09 82.5 1.5 53 55-107 292-353 (595)
102 1v5w_A DMC1, meiotic recombina 97.2 0.0017 5.8E-08 66.3 11.5 57 69-125 110-175 (343)
103 2z43_A DNA repair and recombin 97.2 0.00061 2.1E-08 69.0 8.1 57 69-125 95-160 (324)
104 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.0023 7.9E-08 60.3 11.4 45 80-126 22-69 (235)
105 3lda_A DNA repair protein RAD5 97.1 0.003 1E-07 65.9 12.3 50 73-122 170-228 (400)
106 3hr8_A Protein RECA; alpha and 97.0 0.0025 8.4E-08 65.4 10.4 51 70-120 49-103 (356)
107 1xp8_A RECA protein, recombina 96.9 0.0036 1.2E-07 64.5 10.6 50 70-119 62-115 (366)
108 3io5_A Recombination and repai 96.9 0.0015 5.1E-08 65.7 7.1 44 76-120 24-72 (333)
109 2dr3_A UPF0273 protein PH0284; 96.9 0.0029 9.9E-08 60.3 8.8 52 74-127 16-70 (247)
110 2zr9_A Protein RECA, recombina 96.8 0.002 7E-08 65.9 8.1 49 72-120 51-103 (349)
111 1vec_A ATP-dependent RNA helic 96.8 0.0065 2.2E-07 56.3 10.7 39 62-105 26-65 (206)
112 1qde_A EIF4A, translation init 96.8 0.0056 1.9E-07 57.6 10.3 40 61-105 36-76 (224)
113 2i1q_A DNA repair and recombin 96.8 0.0024 8.1E-08 64.3 8.0 58 69-126 86-162 (322)
114 4a74_A DNA repair and recombin 96.8 0.0054 1.9E-07 57.8 10.0 48 73-120 17-73 (231)
115 2gxq_A Heat resistant RNA depe 96.7 0.0064 2.2E-07 56.4 9.8 40 61-105 23-63 (207)
116 1tue_A Replication protein E1; 96.7 0.0011 3.8E-08 62.4 4.2 42 65-107 43-84 (212)
117 2fz4_A DNA repair protein RAD2 96.7 0.007 2.4E-07 58.2 10.0 49 60-113 92-140 (237)
118 1gvn_B Zeta; postsegregational 96.7 0.0019 6.5E-08 64.2 6.0 35 83-117 35-69 (287)
119 3vkg_A Dynein heavy chain, cyt 96.6 0.0093 3.2E-07 76.0 13.3 52 65-120 592-643 (3245)
120 1u94_A RECA protein, recombina 96.6 0.0028 9.6E-08 65.0 7.3 48 73-120 54-105 (356)
121 1qhx_A CPT, protein (chloramph 96.6 0.0018 6.2E-08 58.7 4.8 32 83-114 5-36 (178)
122 1pzn_A RAD51, DNA repair and r 96.5 0.0027 9.1E-08 65.0 6.4 52 70-121 120-180 (349)
123 3cmu_A Protein RECA, recombina 96.5 0.0049 1.7E-07 75.5 9.0 51 70-120 1415-1469(2050)
124 3b6e_A Interferon-induced heli 96.5 0.0052 1.8E-07 57.2 7.4 41 59-104 31-71 (216)
125 3bor_A Human initiation factor 96.5 0.0065 2.2E-07 58.1 8.1 39 62-105 53-92 (237)
126 2b8t_A Thymidine kinase; deoxy 96.4 0.00094 3.2E-08 64.0 2.1 34 81-114 12-48 (223)
127 4b3f_X DNA-binding protein smu 96.4 0.0039 1.3E-07 69.1 7.1 38 64-105 192-229 (646)
128 1hv8_A Putative ATP-dependent 96.3 0.041 1.4E-06 55.2 13.7 38 61-102 28-65 (367)
129 2q6t_A DNAB replication FORK h 96.3 0.0084 2.9E-07 63.3 8.7 62 69-133 189-254 (444)
130 3bh0_A DNAB-like replicative h 96.3 0.015 5E-07 58.4 10.0 60 70-132 58-120 (315)
131 2r6a_A DNAB helicase, replicat 96.3 0.017 5.9E-07 61.0 10.9 52 78-131 200-255 (454)
132 3trf_A Shikimate kinase, SK; a 96.2 0.0029 9.9E-08 57.8 4.2 30 81-110 5-34 (185)
133 1jr3_D DNA polymerase III, del 96.2 0.014 4.8E-07 59.0 9.6 104 189-302 77-188 (343)
134 1ex7_A Guanylate kinase; subst 96.2 0.0028 9.6E-08 58.9 3.9 30 82-111 2-31 (186)
135 3fe2_A Probable ATP-dependent 96.2 0.036 1.2E-06 52.9 11.9 44 188-236 176-219 (242)
136 2iut_A DNA translocase FTSK; n 96.2 0.033 1.1E-06 60.3 12.6 78 188-266 343-421 (574)
137 1q57_A DNA primase/helicase; d 96.2 0.013 4.4E-07 62.8 9.4 53 78-132 239-295 (503)
138 3kb2_A SPBC2 prophage-derived 96.1 0.0034 1.1E-07 56.3 4.0 28 83-110 3-30 (173)
139 3vaa_A Shikimate kinase, SK; s 96.1 0.0039 1.3E-07 58.0 4.3 31 80-110 24-54 (199)
140 4a1f_A DNAB helicase, replicat 96.1 0.019 6.4E-07 58.3 9.5 59 72-133 38-99 (338)
141 1rz3_A Hypothetical protein rb 96.0 0.012 4.1E-07 54.8 7.4 55 61-115 1-59 (201)
142 3ber_A Probable ATP-dependent 96.0 0.08 2.7E-06 50.9 13.6 33 61-98 65-97 (249)
143 1t6n_A Probable ATP-dependent 96.0 0.1 3.5E-06 48.7 13.9 36 62-102 37-72 (220)
144 2j0s_A ATP-dependent RNA helic 96.0 0.047 1.6E-06 56.1 12.5 39 62-105 60-99 (410)
145 3iij_A Coilin-interacting nucl 96.0 0.0052 1.8E-07 56.0 4.5 29 81-109 11-39 (180)
146 3ly5_A ATP-dependent RNA helic 96.0 0.069 2.4E-06 51.8 12.9 31 62-97 77-107 (262)
147 2oxc_A Probable ATP-dependent 96.0 0.037 1.3E-06 52.4 10.6 39 62-105 47-86 (230)
148 2pl3_A Probable ATP-dependent 96.0 0.071 2.4E-06 50.4 12.6 31 62-97 48-78 (236)
149 1u0j_A DNA replication protein 95.9 0.0075 2.6E-07 59.1 5.5 39 68-106 91-129 (267)
150 1zuh_A Shikimate kinase; alpha 95.9 0.0051 1.8E-07 55.3 4.1 30 81-110 7-36 (168)
151 2iyv_A Shikimate kinase, SK; t 95.9 0.0058 2E-07 55.8 4.5 29 82-110 3-31 (184)
152 3lw7_A Adenylate kinase relate 95.9 0.0047 1.6E-07 55.2 3.5 26 83-109 3-28 (179)
153 1via_A Shikimate kinase; struc 95.8 0.0053 1.8E-07 55.6 3.8 27 82-108 5-31 (175)
154 3tlx_A Adenylate kinase 2; str 95.8 0.0082 2.8E-07 57.9 5.2 29 82-110 30-58 (243)
155 3iuy_A Probable ATP-dependent 95.8 0.15 5E-06 47.9 13.8 33 61-98 42-74 (228)
156 1kag_A SKI, shikimate kinase I 95.7 0.0072 2.5E-07 54.4 4.1 31 82-114 5-35 (173)
157 1wrb_A DJVLGB; RNA helicase, D 95.6 0.17 5.7E-06 48.4 13.9 31 62-97 46-76 (253)
158 1zp6_A Hypothetical protein AT 95.6 0.0069 2.4E-07 55.5 3.8 34 81-114 9-42 (191)
159 1y63_A LMAJ004144AAA protein; 95.6 0.0061 2.1E-07 55.9 3.3 32 81-114 10-42 (184)
160 1e6c_A Shikimate kinase; phosp 95.6 0.008 2.7E-07 54.0 4.0 27 82-108 3-29 (173)
161 1q0u_A Bstdead; DEAD protein, 95.6 0.0094 3.2E-07 56.0 4.6 39 62-105 27-66 (219)
162 2rhm_A Putative kinase; P-loop 95.6 0.0074 2.5E-07 55.2 3.7 28 83-110 7-34 (193)
163 2z0m_A 337AA long hypothetical 95.6 0.13 4.5E-06 50.7 13.3 61 62-132 17-77 (337)
164 3eiq_A Eukaryotic initiation f 95.6 0.065 2.2E-06 54.9 11.3 40 61-105 62-102 (414)
165 2c95_A Adenylate kinase 1; tra 95.5 0.0072 2.5E-07 55.5 3.5 28 81-108 9-36 (196)
166 3exa_A TRNA delta(2)-isopenten 95.5 0.036 1.2E-06 55.6 8.7 31 83-115 5-35 (322)
167 3dl0_A Adenylate kinase; phosp 95.5 0.0091 3.1E-07 56.0 4.1 28 83-110 2-29 (216)
168 3fmo_B ATP-dependent RNA helic 95.5 0.015 5.2E-07 57.9 5.9 46 188-237 235-280 (300)
169 3k1j_A LON protease, ATP-depen 95.5 0.013 4.6E-07 64.2 6.0 47 57-107 40-86 (604)
170 3fb4_A Adenylate kinase; psych 95.5 0.0092 3.1E-07 55.9 4.0 28 83-110 2-29 (216)
171 2z0h_A DTMP kinase, thymidylat 95.5 0.019 6.3E-07 52.7 6.1 30 84-113 3-35 (197)
172 3bgw_A DNAB-like replicative h 95.5 0.029 1E-06 59.1 8.3 60 69-131 186-248 (444)
173 2vli_A Antibiotic resistance p 95.4 0.0077 2.6E-07 54.7 3.3 29 82-110 6-34 (183)
174 3cmu_A Protein RECA, recombina 95.4 0.025 8.5E-07 69.4 8.5 52 69-120 370-425 (2050)
175 3foz_A TRNA delta(2)-isopenten 95.4 0.042 1.5E-06 54.9 8.8 28 83-110 12-39 (316)
176 3cm0_A Adenylate kinase; ATP-b 95.4 0.0086 2.9E-07 54.6 3.5 25 83-107 6-30 (186)
177 2cdn_A Adenylate kinase; phosp 95.4 0.01 3.5E-07 55.0 4.1 28 83-110 22-49 (201)
178 3cmw_A Protein RECA, recombina 95.4 0.014 4.8E-07 70.7 6.1 41 79-119 730-773 (1706)
179 2pt5_A Shikimate kinase, SK; a 95.4 0.011 3.8E-07 52.8 4.1 28 83-110 2-29 (168)
180 1kht_A Adenylate kinase; phosp 95.4 0.0072 2.5E-07 55.1 2.8 25 82-106 4-28 (192)
181 3dkp_A Probable ATP-dependent 95.3 0.049 1.7E-06 51.9 8.8 47 189-236 176-222 (245)
182 1tev_A UMP-CMP kinase; ploop, 95.3 0.0095 3.2E-07 54.4 3.6 26 83-108 5-30 (196)
183 1aky_A Adenylate kinase; ATP:A 95.3 0.01 3.5E-07 56.0 3.9 28 81-108 4-31 (220)
184 3t61_A Gluconokinase; PSI-biol 95.3 0.012 4.1E-07 54.6 4.3 36 82-119 19-54 (202)
185 2gk6_A Regulator of nonsense t 95.3 0.021 7.2E-07 62.9 6.9 38 63-105 182-219 (624)
186 2pbr_A DTMP kinase, thymidylat 95.3 0.025 8.6E-07 51.5 6.4 30 83-112 2-34 (195)
187 1ly1_A Polynucleotide kinase; 95.3 0.0083 2.8E-07 54.1 3.0 30 83-114 4-34 (181)
188 2p5t_B PEZT; postsegregational 95.2 0.024 8.3E-07 54.8 6.4 35 83-117 34-68 (253)
189 2ius_A DNA translocase FTSK; n 95.2 0.034 1.2E-06 59.6 8.0 78 188-266 297-375 (512)
190 1fuu_A Yeast initiation factor 95.2 0.076 2.6E-06 53.9 10.3 40 61-105 43-83 (394)
191 2ze6_A Isopentenyl transferase 95.2 0.013 4.5E-07 56.8 4.1 31 83-113 3-33 (253)
192 2bwj_A Adenylate kinase 5; pho 95.1 0.011 3.7E-07 54.4 3.3 31 82-114 13-43 (199)
193 1ukz_A Uridylate kinase; trans 95.1 0.013 4.3E-07 54.4 3.6 30 83-114 17-46 (203)
194 1qf9_A UMP/CMP kinase, protein 95.1 0.011 3.9E-07 53.8 3.2 30 83-114 8-37 (194)
195 1zd8_A GTP:AMP phosphotransfer 95.1 0.012 4.1E-07 55.8 3.5 28 81-108 7-34 (227)
196 3umf_A Adenylate kinase; rossm 95.0 0.013 4.6E-07 55.6 3.7 27 82-108 30-56 (217)
197 3upu_A ATP-dependent DNA helic 95.0 0.015 5.1E-07 61.6 4.5 37 67-106 34-70 (459)
198 1svm_A Large T antigen; AAA+ f 95.0 0.023 7.8E-07 58.6 5.7 45 64-108 152-196 (377)
199 3sr0_A Adenylate kinase; phosp 95.0 0.013 4.4E-07 55.2 3.5 27 83-109 2-28 (206)
200 1zak_A Adenylate kinase; ATP:A 95.0 0.012 4.1E-07 55.5 3.3 27 81-107 5-31 (222)
201 1g5t_A COB(I)alamin adenosyltr 95.0 0.081 2.8E-06 49.3 8.8 136 81-240 28-169 (196)
202 1ak2_A Adenylate kinase isoenz 95.0 0.015 5E-07 55.5 3.8 27 82-108 17-43 (233)
203 3c8u_A Fructokinase; YP_612366 95.0 0.022 7.4E-07 53.3 4.9 53 64-116 5-60 (208)
204 2qor_A Guanylate kinase; phosp 95.0 0.016 5.6E-07 53.9 4.1 27 80-106 11-37 (204)
205 1e4v_A Adenylate kinase; trans 94.9 0.015 5.1E-07 54.6 3.8 28 83-110 2-29 (214)
206 2pez_A Bifunctional 3'-phospho 94.9 0.02 6.9E-07 51.9 4.5 33 82-114 6-41 (179)
207 3dm5_A SRP54, signal recogniti 94.9 0.3 1E-05 51.2 13.9 53 67-119 80-141 (443)
208 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.019 6.5E-07 55.9 4.5 33 82-114 5-40 (260)
209 1nks_A Adenylate kinase; therm 94.9 0.01 3.6E-07 54.0 2.4 31 83-113 3-36 (194)
210 3be4_A Adenylate kinase; malar 94.8 0.015 5.1E-07 54.8 3.4 29 81-109 5-33 (217)
211 3uie_A Adenylyl-sulfate kinase 94.8 0.022 7.6E-07 52.8 4.5 33 81-113 25-60 (200)
212 2v1x_A ATP-dependent DNA helic 94.8 0.1 3.4E-06 57.1 10.3 32 63-99 46-77 (591)
213 1s2m_A Putative ATP-dependent 94.8 0.19 6.6E-06 51.1 12.0 39 62-105 44-83 (400)
214 1knq_A Gluconate kinase; ALFA/ 94.8 0.015 5.2E-07 52.5 3.2 37 81-119 8-44 (175)
215 3kl4_A SRP54, signal recogniti 94.8 0.27 9.2E-06 51.5 13.1 50 68-117 77-136 (433)
216 2jaq_A Deoxyguanosine kinase; 94.8 0.017 5.8E-07 53.2 3.6 27 83-109 2-28 (205)
217 4eun_A Thermoresistant glucoki 94.8 0.019 6.4E-07 53.3 3.8 37 81-119 29-65 (200)
218 3pey_A ATP-dependent RNA helic 94.7 0.069 2.4E-06 54.1 8.5 42 61-105 27-69 (395)
219 2v54_A DTMP kinase, thymidylat 94.7 0.02 6.8E-07 52.8 4.0 33 81-113 4-37 (204)
220 3tau_A Guanylate kinase, GMP k 94.7 0.018 6.2E-07 53.9 3.7 27 81-107 8-34 (208)
221 3crm_A TRNA delta(2)-isopenten 94.6 0.02 7E-07 57.7 4.0 32 83-114 7-38 (323)
222 2xb4_A Adenylate kinase; ATP-b 94.6 0.019 6.6E-07 54.3 3.5 30 83-114 2-31 (223)
223 2plr_A DTMP kinase, probable t 94.6 0.019 6.5E-07 53.2 3.4 26 83-108 6-31 (213)
224 1kgd_A CASK, peripheral plasma 94.5 0.024 8.1E-07 51.8 3.8 25 82-106 6-30 (180)
225 2if2_A Dephospho-COA kinase; a 94.5 0.022 7.4E-07 52.8 3.6 28 83-111 3-30 (204)
226 2wjy_A Regulator of nonsense t 94.4 0.048 1.6E-06 61.8 6.9 38 63-105 358-395 (800)
227 3e1s_A Exodeoxyribonuclease V, 94.4 0.028 9.7E-07 61.3 4.8 37 64-105 192-228 (574)
228 3i5x_A ATP-dependent RNA helic 94.4 0.21 7.1E-06 53.8 11.7 33 62-97 95-127 (563)
229 3cmw_A Protein RECA, recombina 94.4 0.12 4E-06 62.8 10.4 121 81-233 1431-1567(1706)
230 2xzl_A ATP-dependent helicase 94.4 0.039 1.3E-06 62.5 6.1 37 64-105 363-399 (802)
231 1cke_A CK, MSSA, protein (cyti 94.4 0.025 8.4E-07 53.2 3.8 26 83-108 7-32 (227)
232 1uj2_A Uridine-cytidine kinase 94.3 0.03 1E-06 54.0 4.2 36 83-118 24-67 (252)
233 3nwj_A ATSK2; P loop, shikimat 94.2 0.03 1E-06 54.4 4.0 30 81-110 48-77 (250)
234 2db3_A ATP-dependent RNA helic 94.1 0.69 2.4E-05 48.1 14.7 44 188-235 203-247 (434)
235 3ake_A Cytidylate kinase; CMP 94.1 0.034 1.1E-06 51.4 4.0 26 83-108 4-29 (208)
236 1jjv_A Dephospho-COA kinase; P 94.1 0.032 1.1E-06 51.8 3.8 26 83-109 4-29 (206)
237 3ney_A 55 kDa erythrocyte memb 94.0 0.033 1.1E-06 52.0 3.7 26 81-106 19-44 (197)
238 3fht_A ATP-dependent RNA helic 94.0 0.11 3.9E-06 52.9 8.2 43 61-106 47-90 (412)
239 1xti_A Probable ATP-dependent 94.0 0.51 1.7E-05 47.6 13.0 39 62-105 31-70 (391)
240 1oyw_A RECQ helicase, ATP-depe 94.0 0.28 9.6E-06 52.6 11.5 60 63-132 27-86 (523)
241 3a8t_A Adenylate isopentenyltr 94.0 0.027 9.3E-07 57.0 3.3 32 82-115 41-72 (339)
242 2oap_1 GSPE-2, type II secreti 94.0 0.071 2.4E-06 57.2 6.7 63 46-112 229-293 (511)
243 2j41_A Guanylate kinase; GMP, 93.9 0.033 1.1E-06 51.4 3.5 25 81-105 6-30 (207)
244 2grj_A Dephospho-COA kinase; T 93.9 0.034 1.2E-06 51.7 3.5 32 83-116 14-45 (192)
245 1wp9_A ATP-dependent RNA helic 93.9 0.58 2E-05 48.2 13.5 65 58-133 6-74 (494)
246 2bbw_A Adenylate kinase 4, AK4 93.9 0.037 1.3E-06 53.1 3.9 28 82-109 28-55 (246)
247 2va8_A SSO2462, SKI2-type heli 93.8 0.066 2.3E-06 59.7 6.5 61 62-131 31-95 (715)
248 2wwf_A Thymidilate kinase, put 93.8 0.023 8E-07 52.7 2.3 26 82-107 11-36 (212)
249 3p32_A Probable GTPase RV1496/ 93.8 0.088 3E-06 53.6 6.8 50 66-115 64-116 (355)
250 3zvl_A Bifunctional polynucleo 93.8 0.063 2.2E-06 56.0 5.9 35 83-119 260-294 (416)
251 2xau_A PRE-mRNA-splicing facto 93.8 0.19 6.5E-06 56.7 10.1 35 66-104 98-132 (773)
252 1nn5_A Similar to deoxythymidy 93.8 0.028 9.5E-07 52.2 2.7 25 82-106 10-34 (215)
253 2zts_A Putative uncharacterize 93.7 0.076 2.6E-06 50.3 5.8 46 80-127 29-78 (251)
254 4e22_A Cytidylate kinase; P-lo 93.7 0.042 1.4E-06 53.1 4.0 28 81-108 27-54 (252)
255 3a00_A Guanylate kinase, GMP k 93.7 0.041 1.4E-06 50.3 3.7 24 83-106 3-26 (186)
256 4a4z_A Antiviral helicase SKI2 93.6 0.3 1E-05 56.7 11.5 36 62-102 40-75 (997)
257 3tr0_A Guanylate kinase, GMP k 93.6 0.045 1.5E-06 50.4 3.9 26 81-106 7-32 (205)
258 1m7g_A Adenylylsulfate kinase; 93.6 0.042 1.4E-06 51.3 3.7 33 81-113 25-61 (211)
259 3sqw_A ATP-dependent RNA helic 93.5 0.54 1.8E-05 50.9 13.0 33 62-97 44-76 (579)
260 3eph_A TRNA isopentenyltransfe 93.5 0.032 1.1E-06 57.9 2.9 30 83-114 4-33 (409)
261 1lvg_A Guanylate kinase, GMP k 93.5 0.044 1.5E-06 50.8 3.6 26 81-106 4-29 (198)
262 2qt1_A Nicotinamide riboside k 93.5 0.055 1.9E-06 50.2 4.2 35 83-118 23-57 (207)
263 3r20_A Cytidylate kinase; stru 93.5 0.043 1.5E-06 52.7 3.6 25 83-107 11-35 (233)
264 2ga8_A Hypothetical 39.9 kDa p 93.4 0.073 2.5E-06 54.2 5.3 43 67-109 8-52 (359)
265 2i4i_A ATP-dependent RNA helic 93.4 1.2 4E-05 45.4 14.7 32 61-97 37-68 (417)
266 1ye8_A Protein THEP1, hypothet 93.4 0.043 1.5E-06 50.2 3.2 25 83-107 2-26 (178)
267 2yvu_A Probable adenylyl-sulfa 93.3 0.041 1.4E-06 50.2 3.0 32 82-113 14-48 (186)
268 1w36_D RECD, exodeoxyribonucle 93.3 0.053 1.8E-06 59.5 4.4 24 82-105 165-188 (608)
269 1w4r_A Thymidine kinase; type 93.3 0.1 3.6E-06 48.5 5.7 32 83-114 22-56 (195)
270 1uf9_A TT1252 protein; P-loop, 93.3 0.052 1.8E-06 49.8 3.7 30 83-115 10-39 (203)
271 3fmp_B ATP-dependent RNA helic 93.2 0.14 4.9E-06 53.9 7.5 40 64-106 117-157 (479)
272 2bdt_A BH3686; alpha-beta prot 93.1 0.052 1.8E-06 49.5 3.4 31 83-114 4-34 (189)
273 1sky_E F1-ATPase, F1-ATP synth 93.1 0.68 2.3E-05 48.8 12.3 47 81-127 151-202 (473)
274 4a2p_A RIG-I, retinoic acid in 93.0 0.63 2.2E-05 49.4 12.4 38 60-102 6-43 (556)
275 2p6r_A Afuhel308 helicase; pro 92.9 0.15 5E-06 56.8 7.3 46 81-131 40-88 (702)
276 1odf_A YGR205W, hypothetical 3 92.9 0.17 5.7E-06 50.1 6.9 44 83-126 33-82 (290)
277 1g8f_A Sulfate adenylyltransfe 92.9 0.073 2.5E-06 57.0 4.5 49 59-107 373-421 (511)
278 1vht_A Dephospho-COA kinase; s 92.8 0.063 2.1E-06 50.3 3.6 29 83-114 6-34 (218)
279 3d3q_A TRNA delta(2)-isopenten 92.8 0.06 2E-06 54.6 3.6 33 83-117 9-41 (340)
280 1c9k_A COBU, adenosylcobinamid 92.8 0.069 2.4E-06 49.1 3.7 33 84-117 2-34 (180)
281 1s96_A Guanylate kinase, GMP k 92.8 0.069 2.4E-06 50.6 3.8 27 80-106 15-41 (219)
282 3l9o_A ATP-dependent RNA helic 92.7 0.42 1.5E-05 56.0 11.2 38 61-103 184-221 (1108)
283 3asz_A Uridine kinase; cytidin 92.7 0.07 2.4E-06 49.5 3.7 34 82-115 7-40 (211)
284 1q3t_A Cytidylate kinase; nucl 92.7 0.076 2.6E-06 50.5 4.0 27 82-108 17-43 (236)
285 2h92_A Cytidylate kinase; ross 92.6 0.072 2.5E-06 49.8 3.7 26 83-108 5-30 (219)
286 1a7j_A Phosphoribulokinase; tr 92.6 0.048 1.6E-06 54.0 2.6 36 83-118 7-45 (290)
287 1cr0_A DNA primase/helicase; R 92.4 0.32 1.1E-05 47.7 8.3 50 78-129 32-85 (296)
288 1xjc_A MOBB protein homolog; s 92.4 0.077 2.6E-06 48.3 3.4 35 81-115 4-41 (169)
289 3fdi_A Uncharacterized protein 92.4 0.089 3.1E-06 49.1 3.9 29 82-110 7-35 (201)
290 1z6g_A Guanylate kinase; struc 92.4 0.087 3E-06 49.6 3.9 26 80-105 22-47 (218)
291 2zj8_A DNA helicase, putative 92.3 0.12 4E-06 57.8 5.5 48 62-113 24-75 (720)
292 2z83_A Helicase/nucleoside tri 92.2 0.37 1.3E-05 50.7 9.0 49 80-133 20-72 (459)
293 1ltq_A Polynucleotide kinase; 92.1 0.074 2.5E-06 52.4 3.2 31 83-114 4-34 (301)
294 1np6_A Molybdopterin-guanine d 92.1 0.087 3E-06 48.1 3.3 34 81-114 6-42 (174)
295 2v6i_A RNA helicase; membrane, 92.0 0.55 1.9E-05 49.0 9.9 46 81-131 2-51 (431)
296 2ehv_A Hypothetical protein PH 92.0 0.061 2.1E-06 51.0 2.3 37 79-115 28-68 (251)
297 3fho_A ATP-dependent RNA helic 92.0 0.23 7.9E-06 53.0 7.1 43 189-235 260-302 (508)
298 1htw_A HI0065; nucleotide-bind 91.9 0.12 4.3E-06 46.2 4.2 28 79-106 31-58 (158)
299 2xgj_A ATP-dependent RNA helic 91.7 1.1 3.6E-05 52.2 12.7 47 61-112 86-135 (1010)
300 1gtv_A TMK, thymidylate kinase 91.7 0.04 1.4E-06 51.2 0.6 24 83-106 2-25 (214)
301 2hf9_A Probable hydrogenase ni 91.6 0.14 4.6E-06 47.9 4.3 50 63-114 22-73 (226)
302 1znw_A Guanylate kinase, GMP k 91.5 0.11 3.9E-06 48.2 3.6 27 80-106 19-45 (207)
303 4a2q_A RIG-I, retinoic acid in 91.5 1.1 3.9E-05 50.4 12.5 41 59-104 246-286 (797)
304 2f6r_A COA synthase, bifunctio 91.5 0.093 3.2E-06 51.6 3.1 29 84-115 78-106 (281)
305 1p9r_A General secretion pathw 91.5 0.2 6.8E-06 52.3 5.8 40 64-106 153-192 (418)
306 4eaq_A DTMP kinase, thymidylat 91.4 0.11 3.6E-06 49.6 3.3 25 82-106 27-51 (229)
307 2wsm_A Hydrogenase expression/ 91.3 0.12 4.2E-06 48.0 3.6 50 64-115 15-66 (221)
308 1vma_A Cell division protein F 91.2 0.3 1E-05 48.7 6.5 54 64-117 81-143 (306)
309 1m8p_A Sulfate adenylyltransfe 91.1 0.16 5.4E-06 55.3 4.8 32 82-113 397-432 (573)
310 2eyu_A Twitching motility prot 91.1 0.11 3.7E-06 50.7 3.0 27 79-105 23-49 (261)
311 3tqc_A Pantothenate kinase; bi 91.1 0.44 1.5E-05 47.8 7.7 35 84-118 95-134 (321)
312 2v9p_A Replication protein E1; 91.0 0.17 5.7E-06 50.5 4.5 29 77-105 122-150 (305)
313 3gmt_A Adenylate kinase; ssgci 91.0 0.16 5.4E-06 48.6 4.0 28 83-110 10-37 (230)
314 2v3c_C SRP54, signal recogniti 90.9 0.32 1.1E-05 51.0 6.7 51 68-118 79-139 (432)
315 3lnc_A Guanylate kinase, GMP k 90.9 0.086 3E-06 49.9 2.1 26 81-106 27-53 (231)
316 3e70_C DPA, signal recognition 90.7 0.21 7.1E-06 50.4 4.8 33 83-115 131-166 (328)
317 2orw_A Thymidine kinase; TMTK, 90.6 0.14 4.7E-06 47.0 3.2 32 82-113 4-38 (184)
318 1sq5_A Pantothenate kinase; P- 90.6 0.4 1.4E-05 47.6 6.8 36 83-118 82-122 (308)
319 2ged_A SR-beta, signal recogni 90.6 0.19 6.6E-06 45.4 4.2 24 82-105 49-72 (193)
320 2gza_A Type IV secretion syste 90.6 0.11 3.7E-06 53.1 2.7 35 79-113 173-209 (361)
321 2qmh_A HPR kinase/phosphorylas 90.6 0.11 3.9E-06 48.5 2.5 25 82-106 35-59 (205)
322 4gp7_A Metallophosphoesterase; 90.6 0.12 4E-06 46.7 2.6 22 81-102 9-30 (171)
323 3cr8_A Sulfate adenylyltranfer 90.6 0.12 4.1E-06 55.9 3.1 47 60-106 348-394 (552)
324 2j37_W Signal recognition part 90.5 0.4 1.4E-05 51.2 7.1 53 67-119 80-142 (504)
325 2dyk_A GTP-binding protein; GT 90.5 0.13 4.5E-06 44.7 2.9 23 82-104 2-24 (161)
326 3v9p_A DTMP kinase, thymidylat 90.5 0.35 1.2E-05 46.0 6.0 25 82-106 26-50 (227)
327 2i3b_A HCR-ntpase, human cance 90.4 0.17 5.9E-06 46.7 3.6 23 83-105 3-25 (189)
328 2whx_A Serine protease/ntpase/ 90.3 0.57 1.9E-05 51.4 8.3 48 81-133 186-237 (618)
329 2jlq_A Serine protease subunit 90.3 0.46 1.6E-05 49.8 7.3 48 81-133 19-70 (451)
330 1x6v_B Bifunctional 3'-phospho 90.2 0.2 6.8E-06 55.0 4.5 31 83-113 54-87 (630)
331 3kta_A Chromosome segregation 90.1 0.17 5.7E-06 45.7 3.2 24 83-106 28-51 (182)
332 3jvv_A Twitching mobility prot 90.0 0.14 4.8E-06 52.3 2.8 26 81-106 123-148 (356)
333 1nrj_B SR-beta, signal recogni 89.9 0.19 6.4E-06 46.6 3.5 25 81-105 12-36 (218)
334 1j8m_F SRP54, signal recogniti 89.9 0.46 1.6E-05 47.1 6.5 54 66-119 76-139 (297)
335 4a2w_A RIG-I, retinoic acid in 89.8 1.6 5.3E-05 50.3 11.8 42 59-105 246-287 (936)
336 2jeo_A Uridine-cytidine kinase 89.8 0.18 6.1E-06 48.2 3.3 24 83-106 27-50 (245)
337 3hdt_A Putative kinase; struct 89.7 0.18 6.2E-06 47.9 3.2 27 83-109 16-42 (223)
338 3ice_A Transcription terminati 89.6 0.6 2.1E-05 48.1 7.1 37 80-116 173-214 (422)
339 2r8r_A Sensor protein; KDPD, P 89.5 0.44 1.5E-05 45.4 5.7 38 83-120 8-48 (228)
340 2wv9_A Flavivirin protease NS2 89.5 1.4 4.7E-05 48.8 10.6 49 80-133 240-292 (673)
341 1zu4_A FTSY; GTPase, signal re 89.2 0.46 1.6E-05 47.6 6.0 52 65-116 77-143 (320)
342 2px0_A Flagellar biosynthesis 89.2 0.22 7.6E-06 49.3 3.6 35 83-117 107-145 (296)
343 2ewv_A Twitching motility prot 89.2 0.18 6.2E-06 51.7 3.0 27 80-106 135-161 (372)
344 1z2a_A RAS-related protein RAB 89.1 0.22 7.6E-06 43.5 3.2 22 83-104 7-28 (168)
345 1kao_A RAP2A; GTP-binding prot 89.1 0.23 7.8E-06 43.2 3.3 22 83-104 5-26 (167)
346 2gks_A Bifunctional SAT/APS ki 89.0 0.3 1E-05 52.7 4.7 55 59-113 350-407 (546)
347 1nlf_A Regulatory protein REPA 89.0 0.19 6.6E-06 49.0 2.9 37 80-116 29-78 (279)
348 2p67_A LAO/AO transport system 89.0 0.55 1.9E-05 47.4 6.4 37 79-115 54-93 (341)
349 4edh_A DTMP kinase, thymidylat 88.9 0.22 7.6E-06 46.8 3.2 25 82-106 7-31 (213)
350 3b9q_A Chloroplast SRP recepto 88.9 0.38 1.3E-05 47.8 5.1 52 67-118 77-139 (302)
351 2xxa_A Signal recognition part 88.9 0.69 2.4E-05 48.4 7.3 55 65-119 77-142 (433)
352 2ce2_X GTPase HRAS; signaling 88.9 0.21 7.1E-06 43.3 2.8 22 83-104 5-26 (166)
353 1ek0_A Protein (GTP-binding pr 88.9 0.24 8.1E-06 43.3 3.2 22 83-104 5-26 (170)
354 2ocp_A DGK, deoxyguanosine kin 88.9 0.22 7.7E-06 47.3 3.2 24 83-106 4-27 (241)
355 1wms_A RAB-9, RAB9, RAS-relate 88.8 0.24 8.3E-06 43.8 3.3 22 83-104 9-30 (177)
356 1f2t_A RAD50 ABC-ATPase; DNA d 88.8 0.22 7.6E-06 43.9 2.9 23 83-105 25-47 (149)
357 2nzj_A GTP-binding protein REM 88.7 0.24 8.2E-06 43.6 3.1 22 83-104 6-27 (175)
358 1z0j_A RAB-22, RAS-related pro 88.7 0.25 8.7E-06 43.2 3.3 23 83-105 8-30 (170)
359 1ky3_A GTP-binding protein YPT 88.7 0.25 8.6E-06 43.8 3.3 22 83-104 10-31 (182)
360 2lkc_A Translation initiation 88.6 0.27 9.4E-06 43.5 3.5 24 81-104 8-31 (178)
361 1u8z_A RAS-related protein RAL 88.6 0.25 8.7E-06 42.9 3.2 22 83-104 6-27 (168)
362 1z08_A RAS-related protein RAB 88.6 0.26 8.8E-06 43.2 3.2 22 83-104 8-29 (170)
363 3aez_A Pantothenate kinase; tr 88.5 0.4 1.4E-05 47.9 4.9 36 83-118 92-132 (312)
364 3e2i_A Thymidine kinase; Zn-bi 88.5 0.19 6.5E-06 47.5 2.4 32 82-113 29-63 (219)
365 2pt7_A CAG-ALFA; ATPase, prote 88.5 0.15 5.2E-06 51.4 1.8 33 81-113 171-205 (330)
366 3tmk_A Thymidylate kinase; pho 88.4 0.26 8.9E-06 46.5 3.3 32 81-112 5-36 (216)
367 2qm8_A GTPase/ATPase; G protei 88.4 0.36 1.2E-05 48.7 4.6 34 72-105 46-79 (337)
368 1c1y_A RAS-related protein RAP 88.3 0.27 9.3E-06 42.8 3.2 22 83-104 5-26 (167)
369 1g16_A RAS-related protein SEC 88.3 0.25 8.5E-06 43.2 2.9 22 83-104 5-26 (170)
370 2erx_A GTP-binding protein DI- 88.3 0.26 8.9E-06 43.1 3.0 22 83-104 5-26 (172)
371 2axn_A 6-phosphofructo-2-kinas 88.3 0.36 1.2E-05 51.8 4.7 32 83-114 37-71 (520)
372 2f9l_A RAB11B, member RAS onco 88.2 0.27 9.1E-06 44.9 3.2 22 83-104 7-28 (199)
373 1r8s_A ADP-ribosylation factor 88.2 0.29 1E-05 42.6 3.3 22 83-104 2-23 (164)
374 2wji_A Ferrous iron transport 88.1 0.27 9.2E-06 43.4 3.1 22 83-104 5-26 (165)
375 1r2q_A RAS-related protein RAB 88.1 0.29 9.9E-06 42.7 3.2 22 83-104 8-29 (170)
376 3lv8_A DTMP kinase, thymidylat 88.0 0.27 9.1E-06 47.1 3.2 25 82-106 28-52 (236)
377 3dc4_A Kinesin-like protein NO 88.0 0.15 5.2E-06 51.7 1.5 26 73-98 86-112 (344)
378 3tif_A Uncharacterized ABC tra 88.0 0.23 8E-06 47.4 2.7 28 79-106 29-56 (235)
379 1oix_A RAS-related protein RAB 88.0 0.26 8.9E-06 44.9 3.0 23 83-105 31-53 (191)
380 2hxs_A RAB-26, RAS-related pro 87.9 0.3 1E-05 43.2 3.3 22 83-104 8-29 (178)
381 3q85_A GTP-binding protein REM 87.8 0.29 9.9E-06 42.9 3.1 21 83-103 4-24 (169)
382 1svi_A GTP-binding protein YSX 87.8 0.25 8.6E-06 44.6 2.7 24 81-104 23-46 (195)
383 1upt_A ARL1, ADP-ribosylation 87.7 0.31 1.1E-05 42.7 3.2 23 82-104 8-30 (171)
384 2y8e_A RAB-protein 6, GH09086P 87.6 0.28 9.7E-06 43.3 2.9 22 83-104 16-37 (179)
385 3clv_A RAB5 protein, putative; 87.6 0.31 1.1E-05 43.9 3.3 22 83-104 9-30 (208)
386 1z0f_A RAB14, member RAS oncog 87.6 0.32 1.1E-05 42.9 3.2 22 83-104 17-38 (179)
387 1p5z_B DCK, deoxycytidine kina 87.6 0.17 5.8E-06 48.9 1.4 24 83-106 26-49 (263)
388 3bc1_A RAS-related protein RAB 87.6 0.31 1.1E-05 43.6 3.2 22 83-104 13-34 (195)
389 1yrb_A ATP(GTP)binding protein 87.5 0.48 1.6E-05 45.2 4.7 33 83-115 16-50 (262)
390 2zej_A Dardarin, leucine-rich 87.5 0.26 9E-06 44.4 2.6 22 83-104 4-25 (184)
391 2cbz_A Multidrug resistance-as 87.5 0.26 9E-06 47.1 2.7 28 79-106 29-56 (237)
392 2og2_A Putative signal recogni 87.4 0.53 1.8E-05 48.0 5.1 52 67-118 134-196 (359)
393 2fn4_A P23, RAS-related protei 87.4 0.3 1E-05 43.2 3.0 22 83-104 11-32 (181)
394 4dsu_A GTPase KRAS, isoform 2B 87.4 0.34 1.1E-05 43.3 3.3 22 83-104 6-27 (189)
395 3pqc_A Probable GTP-binding pr 87.3 0.28 9.6E-06 44.0 2.7 23 82-104 24-46 (195)
396 2efe_B Small GTP-binding prote 87.2 0.34 1.2E-05 42.9 3.2 22 83-104 14-35 (181)
397 2wjg_A FEOB, ferrous iron tran 87.1 0.33 1.1E-05 43.5 3.1 22 83-104 9-30 (188)
398 3q72_A GTP-binding protein RAD 87.1 0.29 1E-05 42.7 2.6 21 83-103 4-24 (166)
399 2oil_A CATX-8, RAS-related pro 87.1 0.35 1.2E-05 43.7 3.2 22 83-104 27-48 (193)
400 2bme_A RAB4A, RAS-related prot 87.0 0.31 1E-05 43.6 2.8 22 83-104 12-33 (186)
401 2a9k_A RAS-related protein RAL 86.8 0.37 1.3E-05 42.8 3.2 22 83-104 20-41 (187)
402 1zj6_A ADP-ribosylation factor 86.8 0.53 1.8E-05 42.3 4.3 24 81-104 16-39 (187)
403 4i1u_A Dephospho-COA kinase; s 86.8 0.41 1.4E-05 45.0 3.6 49 82-133 10-63 (210)
404 3ld9_A DTMP kinase, thymidylat 86.7 0.36 1.2E-05 45.8 3.2 25 83-107 23-47 (223)
405 2f1r_A Molybdopterin-guanine d 86.7 0.17 5.9E-06 45.9 0.9 24 83-106 4-27 (171)
406 4tmk_A Protein (thymidylate ki 86.7 0.36 1.2E-05 45.4 3.2 25 82-106 4-28 (213)
407 2pcj_A ABC transporter, lipopr 86.7 0.29 9.9E-06 46.3 2.5 27 80-106 29-55 (224)
408 3kkq_A RAS-related protein M-R 86.7 0.36 1.2E-05 43.0 3.1 22 83-104 20-41 (183)
409 1m7b_A RND3/RHOE small GTP-bin 86.7 0.34 1.2E-05 43.5 2.9 22 83-104 9-30 (184)
410 1sgw_A Putative ABC transporte 86.7 0.36 1.2E-05 45.5 3.1 27 80-106 34-60 (214)
411 3con_A GTPase NRAS; structural 86.6 0.38 1.3E-05 43.2 3.2 22 83-104 23-44 (190)
412 2g6b_A RAS-related protein RAB 86.6 0.39 1.3E-05 42.5 3.2 22 83-104 12-33 (180)
413 3b85_A Phosphate starvation-in 86.6 0.31 1E-05 45.7 2.6 24 81-104 22-45 (208)
414 2bov_A RAla, RAS-related prote 86.6 0.36 1.2E-05 43.8 3.1 22 83-104 16-37 (206)
415 1b0u_A Histidine permease; ABC 86.6 0.32 1.1E-05 47.3 2.8 28 79-106 30-57 (262)
416 4f92_B U5 small nuclear ribonu 86.5 2.6 9E-05 51.6 11.3 44 66-113 931-979 (1724)
417 3tw8_B RAS-related protein RAB 86.5 0.36 1.2E-05 42.6 2.9 23 82-104 10-32 (181)
418 3c5c_A RAS-like protein 12; GD 86.4 0.4 1.4E-05 43.3 3.3 22 83-104 23-44 (187)
419 3ihw_A Centg3; RAS, centaurin, 86.4 0.4 1.4E-05 43.3 3.2 21 84-104 23-43 (184)
420 1vg8_A RAS-related protein RAB 86.4 0.38 1.3E-05 43.8 3.1 22 83-104 10-31 (207)
421 2yhs_A FTSY, cell division pro 86.4 0.65 2.2E-05 49.4 5.2 50 68-117 273-331 (503)
422 1tq4_A IIGP1, interferon-induc 86.3 0.34 1.2E-05 50.4 3.0 25 81-105 69-93 (413)
423 2cxx_A Probable GTP-binding pr 86.3 0.33 1.1E-05 43.5 2.6 22 83-104 3-24 (190)
424 3llm_A ATP-dependent RNA helic 86.3 0.61 2.1E-05 44.1 4.6 22 81-102 76-97 (235)
425 1mh1_A RAC1; GTP-binding, GTPa 86.3 0.41 1.4E-05 42.6 3.2 22 83-104 7-28 (186)
426 1jwy_B Dynamin A GTPase domain 86.3 0.37 1.3E-05 47.5 3.2 24 81-104 24-47 (315)
427 1rj9_A FTSY, signal recognitio 86.2 0.39 1.3E-05 47.8 3.3 24 83-106 104-127 (304)
428 2zu0_C Probable ATP-dependent 86.2 0.4 1.4E-05 46.7 3.3 26 79-104 44-69 (267)
429 2onk_A Molybdate/tungstate ABC 86.2 0.39 1.3E-05 46.0 3.1 25 82-106 25-49 (240)
430 1z06_A RAS-related protein RAB 86.1 0.42 1.5E-05 43.0 3.3 22 83-104 22-43 (189)
431 2gf9_A RAS-related protein RAB 86.1 0.42 1.4E-05 43.0 3.2 22 83-104 24-45 (189)
432 3bwd_D RAC-like GTP-binding pr 86.1 0.42 1.4E-05 42.4 3.2 23 82-104 9-31 (182)
433 1zd9_A ADP-ribosylation factor 86.1 0.42 1.4E-05 43.1 3.2 22 83-104 24-45 (188)
434 3dz8_A RAS-related protein RAB 86.0 0.4 1.4E-05 43.3 3.0 23 83-105 25-47 (191)
435 3tkl_A RAS-related protein RAB 86.0 0.43 1.5E-05 43.0 3.2 22 83-104 18-39 (196)
436 3lfu_A DNA helicase II; SF1 he 86.0 0.38 1.3E-05 52.6 3.4 20 81-100 22-41 (647)
437 2ghi_A Transport protein; mult 85.9 0.36 1.2E-05 46.9 2.7 28 79-106 44-71 (260)
438 1tf7_A KAIC; homohexamer, hexa 85.9 0.35 1.2E-05 51.9 2.9 55 70-126 270-327 (525)
439 2olj_A Amino acid ABC transpor 85.9 0.36 1.2E-05 47.0 2.8 28 79-106 48-75 (263)
440 1x3s_A RAS-related protein RAB 85.8 0.44 1.5E-05 42.8 3.2 22 83-104 17-38 (195)
441 1mv5_A LMRA, multidrug resista 85.8 0.32 1.1E-05 46.7 2.3 27 80-106 27-53 (243)
442 1zbd_A Rabphilin-3A; G protein 85.8 0.41 1.4E-05 43.6 3.0 22 83-104 10-31 (203)
443 2ixe_A Antigen peptide transpo 85.7 0.37 1.3E-05 47.1 2.7 28 79-106 43-70 (271)
444 2a5j_A RAS-related protein RAB 85.7 0.45 1.5E-05 42.9 3.2 22 83-104 23-44 (191)
445 2pze_A Cystic fibrosis transme 85.7 0.38 1.3E-05 45.6 2.8 27 80-106 33-59 (229)
446 2d2e_A SUFC protein; ABC-ATPas 85.7 0.44 1.5E-05 45.9 3.3 25 80-104 28-52 (250)
447 2atv_A RERG, RAS-like estrogen 85.6 0.46 1.6E-05 43.1 3.3 22 83-104 30-51 (196)
448 2yv5_A YJEQ protein; hydrolase 85.6 0.59 2E-05 46.3 4.3 23 83-106 167-189 (302)
449 1h65_A Chloroplast outer envel 85.6 0.53 1.8E-05 45.5 3.9 23 82-104 40-62 (270)
450 1g6h_A High-affinity branched- 85.6 0.38 1.3E-05 46.5 2.8 27 80-106 32-58 (257)
451 3sop_A Neuronal-specific septi 85.6 0.35 1.2E-05 47.2 2.5 24 83-106 4-27 (270)
452 2p5s_A RAS and EF-hand domain 85.5 0.47 1.6E-05 43.2 3.2 22 83-104 30-51 (199)
453 2fg5_A RAB-22B, RAS-related pr 85.5 0.43 1.5E-05 43.2 3.0 22 83-104 25-46 (192)
454 2iwr_A Centaurin gamma 1; ANK 85.5 0.35 1.2E-05 42.9 2.3 22 83-104 9-30 (178)
455 1vpl_A ABC transporter, ATP-bi 85.4 0.4 1.4E-05 46.5 2.8 28 79-106 39-66 (256)
456 3t5g_A GTP-binding protein RHE 85.4 0.42 1.4E-05 42.5 2.8 22 83-104 8-29 (181)
457 2gj8_A MNME, tRNA modification 85.4 0.42 1.4E-05 42.6 2.8 22 83-104 6-27 (172)
458 1m2o_B GTP-binding protein SAR 85.4 0.43 1.5E-05 43.2 2.9 23 82-104 24-46 (190)
459 3fvq_A Fe(3+) IONS import ATP- 85.3 0.41 1.4E-05 48.8 3.0 27 80-106 29-55 (359)
460 3qks_A DNA double-strand break 85.3 0.46 1.6E-05 44.1 3.1 24 83-106 25-48 (203)
461 2ff7_A Alpha-hemolysin translo 85.2 0.41 1.4E-05 46.1 2.8 27 80-106 34-60 (247)
462 2bcg_Y Protein YP2, GTP-bindin 85.2 0.44 1.5E-05 43.5 2.9 22 83-104 10-31 (206)
463 3t1o_A Gliding protein MGLA; G 85.2 0.49 1.7E-05 42.4 3.2 23 83-105 16-38 (198)
464 2yz2_A Putative ABC transporte 85.2 0.4 1.4E-05 46.6 2.7 28 79-106 31-58 (266)
465 1ksh_A ARF-like protein 2; sma 85.2 0.39 1.3E-05 43.0 2.5 23 82-104 19-41 (186)
466 3def_A T7I23.11 protein; chlor 85.2 0.59 2E-05 45.0 3.9 23 82-104 37-59 (262)
467 3reg_A RHO-like small GTPase; 85.1 0.5 1.7E-05 42.7 3.2 22 83-104 25-46 (194)
468 1ji0_A ABC transporter; ATP bi 85.1 0.42 1.4E-05 45.7 2.8 27 80-106 31-57 (240)
469 2it1_A 362AA long hypothetical 84.9 0.49 1.7E-05 48.3 3.3 27 80-106 28-54 (362)
470 1bif_A 6-phosphofructo-2-kinas 84.9 0.46 1.6E-05 50.2 3.2 24 83-106 41-64 (469)
471 3cph_A RAS-related protein SEC 84.9 0.51 1.7E-05 43.2 3.2 22 83-104 22-43 (213)
472 2rep_A Kinesin-like protein KI 84.8 0.46 1.6E-05 48.7 3.1 36 64-99 98-134 (376)
473 2qi9_C Vitamin B12 import ATP- 84.8 0.45 1.5E-05 45.9 2.8 27 80-106 25-51 (249)
474 2yyz_A Sugar ABC transporter, 84.8 0.49 1.7E-05 48.2 3.3 27 80-106 28-54 (359)
475 2fh5_B SR-beta, signal recogni 84.8 0.52 1.8E-05 43.3 3.2 24 82-105 8-31 (214)
476 2gf0_A GTP-binding protein DI- 84.8 0.49 1.7E-05 42.7 3.0 22 83-104 10-31 (199)
477 1nij_A Hypothetical protein YJ 84.6 0.48 1.7E-05 47.3 3.1 32 81-112 4-36 (318)
478 1v43_A Sugar-binding transport 84.6 0.51 1.8E-05 48.3 3.3 28 79-106 35-62 (372)
479 3gfo_A Cobalt import ATP-bindi 84.6 0.45 1.5E-05 46.6 2.8 27 80-106 33-59 (275)
480 2h17_A ADP-ribosylation factor 84.5 0.4 1.4E-05 42.9 2.2 22 83-104 23-44 (181)
481 2www_A Methylmalonic aciduria 84.5 0.49 1.7E-05 47.9 3.1 25 81-105 74-98 (349)
482 3oes_A GTPase rhebl1; small GT 84.5 0.5 1.7E-05 43.1 2.9 22 83-104 26-47 (201)
483 1moz_A ARL1, ADP-ribosylation 84.4 0.47 1.6E-05 42.2 2.6 22 82-103 19-40 (183)
484 2o52_A RAS-related protein RAB 84.4 0.48 1.7E-05 43.3 2.8 22 83-104 27-48 (200)
485 4hlc_A DTMP kinase, thymidylat 84.4 1.4 4.8E-05 41.0 6.0 24 83-106 4-27 (205)
486 3lxx_A GTPase IMAP family memb 84.4 0.53 1.8E-05 44.5 3.1 24 82-105 30-53 (239)
487 3rlf_A Maltose/maltodextrin im 84.3 0.54 1.8E-05 48.3 3.3 27 80-106 28-54 (381)
488 4ag6_A VIRB4 ATPase, type IV s 84.3 0.61 2.1E-05 47.8 3.8 25 81-105 35-59 (392)
489 2ew1_A RAS-related protein RAB 84.2 0.52 1.8E-05 43.4 2.9 22 83-104 28-49 (201)
490 2fu5_C RAS-related protein RAB 84.2 0.34 1.2E-05 43.2 1.6 22 83-104 10-31 (183)
491 2q3h_A RAS homolog gene family 84.2 0.55 1.9E-05 42.6 3.1 22 83-104 22-43 (201)
492 1z47_A CYSA, putative ABC-tran 84.2 0.55 1.9E-05 47.8 3.3 27 80-106 40-66 (355)
493 2nq2_C Hypothetical ABC transp 84.2 0.48 1.7E-05 45.7 2.8 27 80-106 30-56 (253)
494 1gwn_A RHO-related GTP-binding 84.1 0.53 1.8E-05 43.4 2.9 22 83-104 30-51 (205)
495 3tqf_A HPR(Ser) kinase; transf 84.1 0.54 1.9E-05 42.9 2.9 24 81-104 16-39 (181)
496 1fzq_A ADP-ribosylation factor 84.1 0.49 1.7E-05 42.5 2.6 22 83-104 18-39 (181)
497 2ihy_A ABC transporter, ATP-bi 84.0 0.5 1.7E-05 46.4 2.8 27 80-106 46-72 (279)
498 4g1u_C Hemin import ATP-bindin 83.9 0.51 1.7E-05 46.0 2.8 35 80-114 36-72 (266)
499 2f7s_A C25KG, RAS-related prot 83.9 0.59 2E-05 43.1 3.1 22 83-104 27-48 (217)
500 2atx_A Small GTP binding prote 83.8 0.57 1.9E-05 42.3 3.0 22 83-104 20-41 (194)
No 1
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.6e-22 Score=205.72 Aligned_cols=176 Identities=8% Similarity=0.073 Sum_probs=128.4
Q ss_pred HHhhc-CCChHHHHHHHHHHHcccCC--CCCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEeccccCCHH
Q 009352 55 DLLSR-FPGRRVQILELLRLLGTLNS--SMPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSCYSPR 121 (537)
Q Consensus 55 ~l~~~-~~~Re~qi~~L~~ll~~~~~--~~~~l~I~G~~GtGKTsiv~~vl~~l~----------~~~~~inc~~~~s~~ 121 (537)
+-+.+ ++|||+|+.+|..+|.+... .+++++||||||||||++++.+++++. ..+++|||..+.++.
T Consensus 16 ~~~~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~ 95 (318)
T 3te6_A 16 LQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--H
T ss_pred cCCccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHH
Confidence 33444 89999999999999988653 345799999999999999999999983 468999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccc
Q 009352 122 ILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR 201 (537)
Q Consensus 122 ~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~ 201 (537)
.+|..|++++.++... ..... ..|+..+. .+. ...+.++||||||+|+|.
T Consensus 96 ~~~~~I~~~L~g~~~~----------~~~~~---~~L~~~f~----~~~-------------~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 96 ALYEKIWFAISKENLC----------GDISL---EALNFYIT----NVP-------------KAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHHHHHSCCC------------CCCCH---HHHHHHHH----HSC-------------GGGSCEEEEEEECCSSSC
T ss_pred HHHHHHHHHhcCCCCC----------chHHH---HHHHHHHH----Hhh-------------hccCCceEEEEecHHHhh
Confidence 9999999999664211 11111 22333332 210 013468999999999997
Q ss_pred ccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCC--ccccc-cCCCCC-CCceeecCCCCHHHHHHHHH
Q 009352 202 EWDKSSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYH-SNTGYV-APIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 202 ~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~--~~~f~-~r~~~~-~p~~I~FppYt~~el~~IL~ 265 (537)
+ +++|+.|+++.+.. ..+++||+|+|+. ++..+ +++.++ .+..|+|+||+.+|+.+||.
T Consensus 146 --~--q~~L~~l~~~~~~~-~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~ 208 (318)
T 3te6_A 146 --S--EKILQYFEKWISSK-NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMII 208 (318)
T ss_dssp --C--THHHHHHHHHHHCS-SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred --c--chHHHHHHhccccc-CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHH
Confidence 2 78999999987653 3579999999985 33332 233222 34689999999999999995
No 2
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.77 E-value=1.3e-18 Score=180.50 Aligned_cols=231 Identities=14% Similarity=0.162 Sum_probs=151.7
Q ss_pred Ccccc-CCCCChhHHhhcCCChHHHHHHHHHHHcccC--CCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeE
Q 009352 43 DLVFG-QEPISLDDLLSRFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFV 110 (537)
Q Consensus 43 ~~~f~-~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GtGKTsiv~~vl~~l---------~~~~~ 110 (537)
+.+|. .+++..++.|+.|+||++++.+|..++.... ....+++|+||+|||||++++.+++.+ +..++
T Consensus 3 ~~~f~~~~~l~~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
T 2v1u_A 3 SKIFRKRWVLLPDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPI 82 (387)
T ss_dssp CSSBSCHHHHSTTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cchhhCHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 34554 3445566778899999999999999986653 345679999999999999999999988 77899
Q ss_pred EEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEE
Q 009352 111 YTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMI 190 (537)
Q Consensus 111 ~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~ 190 (537)
++||..+.++..++..++.++....+ ....+..+ +++.+...++ ..++++
T Consensus 83 ~i~~~~~~~~~~~~~~l~~~l~~~~~---------~~~~~~~~-------~~~~l~~~l~--------------~~~~~~ 132 (387)
T 2v1u_A 83 YVNARHRETPYRVASAIAEAVGVRVP---------FTGLSVGE-------VYERLVKRLS--------------RLRGIY 132 (387)
T ss_dssp EEETTTSCSHHHHHHHHHHHHSCCCC---------SSCCCHHH-------HHHHHHHHHT--------------TSCSEE
T ss_pred EEECCcCCCHHHHHHHHHHHhCCCCC---------CCCCCHHH-------HHHHHHHHHh--------------ccCCeE
Confidence 99999999999999999999843211 11122233 2222222221 134688
Q ss_pred EEEEeCCCcccccCCCCChHHHHHhhhhhcC-CCcEEEEEEeCCCc--cccccCCCCC-CCceeecCCCCHHHHHHHHHh
Q 009352 191 YLIFDNFELVREWDKSSSILPFLFGLSDILK-MPEVGMIFISSTSP--DTYHSNTGYV-APIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 191 vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~--~~f~~r~~~~-~p~~I~FppYt~~el~~IL~~ 266 (537)
+|||||+|.+......+++|..|+++.+..+ ..++++|++++..+ +.+..+..++ ....|+|+||+.+|+.+||..
T Consensus 133 vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~ 212 (387)
T 2v1u_A 133 IIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILET 212 (387)
T ss_dssp EEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHH
T ss_pred EEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHH
Confidence 9999999999752103567777777665432 24688999988753 3332222222 224899999999999999953
Q ss_pred cC----CChhhhhHHHHHHhhccccccCCHHHHHHHHHHhh
Q 009352 267 NQ----ANQKLYSSFLDIVLRPFCRITKRVDELSTAFSLLF 303 (537)
Q Consensus 267 ~r----~~~~l~~~~~~~il~~~~~~~r~l~~L~~~~~~lw 303 (537)
.. ....+.+..++.+........+++..+..++...|
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 213 RAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp HHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 21 11233344555555544433456666666665554
No 3
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=2.3e-17 Score=171.51 Aligned_cols=223 Identities=13% Similarity=0.128 Sum_probs=150.0
Q ss_pred ccc-CCCCChhHHhhcCCChHHHHHHHHHHHcccCC--CCCCeEEECCCCCCHHHHHHHHHHhc-----------CCCeE
Q 009352 45 VFG-QEPISLDDLLSRFPGRRVQILELLRLLGTLNS--SMPPLFVYGSASTGKTSIIIQVFRHL-----------SRPFV 110 (537)
Q Consensus 45 ~f~-~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~--~~~~l~I~G~~GtGKTsiv~~vl~~l-----------~~~~~ 110 (537)
+|. .+++...+.|+.|+||++++++|..++..... ..++++|+||+|||||++++.+++.+ +..++
T Consensus 6 i~~~~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 6 IKNPKVFIDPLSVFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp -CCTTTTTCHHHHCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred ccccHhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 444 45567778899999999999999988876433 23469999999999999999999987 78899
Q ss_pred EEeccccC-CHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcE
Q 009352 111 YTSCLSCY-SPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKM 189 (537)
Q Consensus 111 ~inc~~~~-s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~ 189 (537)
++||..+. ++..++..++.++.+.... .......+ +++.+...++ ..+.
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~~~~~~-------~~~~l~~~l~---------------~~~~ 135 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVP--------KHGINLGE-------YIDKIKNGTR---------------NIRA 135 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCC--------SSSSCTHH-------HHHHHHHHHS---------------SSCE
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCC--------CCCCCHHH-------HHHHHHHHhc---------------cCCC
Confidence 99999998 9999999999998654221 11122233 2222222221 2233
Q ss_pred EEEEEeCCCcccccCCCCCh-HHHHHhhhhhcCCCcEEEEEEeCCCc--cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 190 IYLIFDNFELVREWDKSSSI-LPFLFGLSDILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 190 ~vlVLDe~D~L~~~d~~~~l-L~~L~rl~e~~~~~~l~vI~Is~~~~--~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+|||||+|.+.... ..++ ++.|+++. .++.+|++++..+ +.+..+..++....|+|+||+.+|+.+||..
T Consensus 136 -vlilDEi~~l~~~~-~~~~~l~~l~~~~-----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~ 208 (384)
T 2qby_B 136 -IIYLDEVDTLVKRR-GGDIVLYQLLRSD-----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSK 208 (384)
T ss_dssp -EEEEETTHHHHHST-TSHHHHHHHHTSS-----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHH
T ss_pred -EEEEECHHHhccCC-CCceeHHHHhcCC-----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 99999999997521 2566 77776654 4799999998763 3333222122123899999999999999964
Q ss_pred c----CCChhhhhHHHHHHhhccccccCCHHHHHHHHHHhhh
Q 009352 267 N----QANQKLYSSFLDIVLRPFCRITKRVDELSTAFSLLFK 304 (537)
Q Consensus 267 ~----r~~~~l~~~~~~~il~~~~~~~r~l~~L~~~~~~lw~ 304 (537)
. .....+.+..++.+........+++..+...+...+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 209 YAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp HHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 2 1112344555565555554344666666555555543
No 4
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=6.5e-17 Score=167.47 Aligned_cols=229 Identities=16% Similarity=0.236 Sum_probs=145.7
Q ss_pred ccc-CCCCChhHHhhcCCChHHHHHHHHHHHcccC--CCCCCeEEECCCCCCHHHHHHHHHHhc------CCCeEEEecc
Q 009352 45 VFG-QEPISLDDLLSRFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHL------SRPFVYTSCL 115 (537)
Q Consensus 45 ~f~-~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GtGKTsiv~~vl~~l------~~~~~~inc~ 115 (537)
+|. .+++..++.++.|+||++++..|...+.... ..+.+++|+||+|||||++++.+++.+ +..+++++|.
T Consensus 6 i~~~~~~l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 6 IFINREYLLPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CBSCGGGGSSSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred cccchhhCCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 443 3445556677899999999999999987642 334579999999999999999999988 7789999999
Q ss_pred ccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEe
Q 009352 116 SCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFD 195 (537)
Q Consensus 116 ~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLD 195 (537)
.+.+...++..++.++....+ ....+..+ .++.+.+.+. ..+.+.+||||
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~~-------~~~~l~~~l~--------------~~~~~~vlilD 135 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVP---------FTGLSIAE-------LYRRLVKAVR--------------DYGSQVVIVLD 135 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCC---------SSSCCHHH-------HHHHHHHHHH--------------TCCSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCC---------CCCCCHHH-------HHHHHHHHHh--------------ccCCeEEEEEc
Confidence 988888888888776632111 11122222 2222222221 13357899999
Q ss_pred CCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc--cccccCCCCC-CCceeecCCCCHHHHHHHHHhcC----
Q 009352 196 NFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP--DTYHSNTGYV-APIHVYFPECTEDDLRQIFMRNQ---- 268 (537)
Q Consensus 196 e~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~--~~f~~r~~~~-~p~~I~FppYt~~el~~IL~~~r---- 268 (537)
|+|.+.+.. ..+++..|+++.+.....++++|++++..+ +.+..+..++ ....|+|+||+.+|+.+||....
T Consensus 136 E~~~l~~~~-~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~ 214 (386)
T 2qby_A 136 EIDAFVKKY-NDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF 214 (386)
T ss_dssp THHHHHHSS-CSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB
T ss_pred ChhhhhccC-cCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999997521 267888888876543234689999998753 2222211111 22489999999999999996311
Q ss_pred CChhhhhHHHHHHhhccccccCCHHHHHHHHHHhhh
Q 009352 269 ANQKLYSSFLDIVLRPFCRITKRVDELSTAFSLLFK 304 (537)
Q Consensus 269 ~~~~l~~~~~~~il~~~~~~~r~l~~L~~~~~~lw~ 304 (537)
....+.+..+..+........+++..+...+...+.
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 215 KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 112233344444444333223566655555555543
No 5
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.70 E-value=8.4e-17 Score=167.31 Aligned_cols=220 Identities=17% Similarity=0.229 Sum_probs=145.3
Q ss_pred CCCChhHHhhcCCChHHHHHHHHHHHcccC--CC--CCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCH
Q 009352 49 EPISLDDLLSRFPGRRVQILELLRLLGTLN--SS--MPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSP 120 (537)
Q Consensus 49 ~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~--~~--~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~ 120 (537)
+++...+.|+.++||++++.+|...+.... .. .++++|+||+|||||++++.+++.+ +..++++||..+.++
T Consensus 8 ~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 8 SVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp GGGSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred hhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 344555667899999999999999987632 12 2379999999999999999999988 457899999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcc
Q 009352 121 RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (537)
Q Consensus 121 ~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L 200 (537)
..++..++..+....+ ....+..+....+...+ . . .+++.||||||+|.+
T Consensus 88 ~~~~~~l~~~l~~~~~---------~~~~~~~~~~~~l~~~l----~---~--------------~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFP---------RRGLSRDEFLALLVEHL----R---E--------------RDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHHHHHHTTCCCC---------SSCCCHHHHHHHHHHHH----H---H--------------TTCCEEEEEETGGGS
T ss_pred HHHHHHHHHHhCccCC---------CCCCCHHHHHHHHHHHH----h---h--------------cCCeEEEEEECcccc
Confidence 9999999888743211 11112233222222222 1 1 345789999999998
Q ss_pred cccCCCCChHHHHHhhhhhcCC---CcEEEEEEeCCCc--cccccCCCCC-CCceeecCCCCHHHHHHHHHhcCCC----
Q 009352 201 REWDKSSSILPFLFGLSDILKM---PEVGMIFISSTSP--DTYHSNTGYV-APIHVYFPECTEDDLRQIFMRNQAN---- 270 (537)
Q Consensus 201 ~~~d~~~~lL~~L~rl~e~~~~---~~l~vI~Is~~~~--~~f~~r~~~~-~p~~I~FppYt~~el~~IL~~~r~~---- 270 (537)
. ...+..|+++.+.... .++.+|++++... +.+..+..++ ....|+|+||+.+|+.+|+.. +..
T Consensus 138 ~-----~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~-~~~~~~~ 211 (389)
T 1fnn_A 138 A-----PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLD-RAKAGLA 211 (389)
T ss_dssp C-----HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHH-HHHHHBC
T ss_pred c-----hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHH-HHHhhcC
Confidence 2 4677888777654322 4799999998752 2232211111 224799999999999999953 221
Q ss_pred -hhhhhHHHHHHhhccccc------cCCHHHHHHHHHHhhh
Q 009352 271 -QKLYSSFLDIVLRPFCRI------TKRVDELSTAFSLLFK 304 (537)
Q Consensus 271 -~~l~~~~~~~il~~~~~~------~r~l~~L~~~~~~lw~ 304 (537)
..+.+..++.++....+. .+++..+...+...|.
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 212 EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 134445555555554333 4566666666655543
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=6.3e-16 Score=162.06 Aligned_cols=231 Identities=13% Similarity=0.165 Sum_probs=144.6
Q ss_pred CCcccc-CCCCChhHHhhcCCChHHHHHHHHHHH-cccCC----CCCCeEE--ECCCCCCHHHHHHHHHHhc--------
Q 009352 42 GDLVFG-QEPISLDDLLSRFPGRRVQILELLRLL-GTLNS----SMPPLFV--YGSASTGKTSIIIQVFRHL-------- 105 (537)
Q Consensus 42 ~~~~f~-~~~~~~~~l~~~~~~Re~qi~~L~~ll-~~~~~----~~~~l~I--~G~~GtGKTsiv~~vl~~l-------- 105 (537)
++.+|. .+++..++++..|+||++|+++|..++ ..... ....++| +|++|+|||++++.+++.+
T Consensus 5 ~~~i~~~~~~~~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~ 84 (412)
T 1w5s_A 5 RHGLFKDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEG 84 (412)
T ss_dssp --CCBSCGGGGSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhccHhhcCCccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccC
Confidence 444554 445666777899999999999999998 54322 2346889 9999999999999999876
Q ss_pred -CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccc
Q 009352 106 -SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQ 184 (537)
Q Consensus 106 -~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~ 184 (537)
+..++|++|....++..++..++.++....+ ....+..+....+...+. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---------~~~~~~~~~~~~l~~~l~-------~------------- 135 (412)
T 1w5s_A 85 LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ---------VRGAPALDILKALVDNLY-------V------------- 135 (412)
T ss_dssp CCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC---------CTTCCHHHHHHHHHHHHH-------H-------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHHHhCCCCC---------CCCCCHHHHHHHHHHHHH-------h-------------
Confidence 4568999999889999999999998843211 011123332332322221 0
Q ss_pred cCCcEEEEEEeCCCcccccC-CCCChHHHHHhhhhhcC--C--CcEEEEEEeCCCc--cccc---cCCCCCCCceeecCC
Q 009352 185 VNGKMIYLIFDNFELVREWD-KSSSILPFLFGLSDILK--M--PEVGMIFISSTSP--DTYH---SNTGYVAPIHVYFPE 254 (537)
Q Consensus 185 ~~~~~~vlVLDe~D~L~~~d-~~~~lL~~L~rl~e~~~--~--~~l~vI~Is~~~~--~~f~---~r~~~~~p~~I~Fpp 254 (537)
.+++++|||||+|.+.+.. ...+.+..|+++.+..+ . .++.+|++++... +.+. .+........++|+|
T Consensus 136 -~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~ 214 (412)
T 1w5s_A 136 -ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPA 214 (412)
T ss_dssp -HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCC
T ss_pred -cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCC
Confidence 2468999999999996420 02467777777655432 2 4688998887542 1222 111111113499999
Q ss_pred CCHHHHHHHHHhcC----CChhhhhHHHHHHhhcccccc---CCHHHHHHHHHHh
Q 009352 255 CTEDDLRQIFMRNQ----ANQKLYSSFLDIVLRPFCRIT---KRVDELSTAFSLL 302 (537)
Q Consensus 255 Yt~~el~~IL~~~r----~~~~l~~~~~~~il~~~~~~~---r~l~~L~~~~~~l 302 (537)
|+.+|+.+|+.... ....+.+..+..++....... +++..+...+...
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a 269 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMA 269 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 99999999994211 111233445555555554223 4555555444443
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.39 E-value=9.6e-12 Score=126.80 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=114.5
Q ss_pred HhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC------CHHHHHHHHHH
Q 009352 56 LLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY------SPRILFESILN 129 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~------s~~~l~~~Il~ 129 (537)
.+..|+||++++++|...+.. ++.++|+|++|+|||++++.+++..+ ++|++|..+. +...+++.+..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~----~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN----YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQS 83 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhc----CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHH
Confidence 357899999999999999875 36799999999999999999999875 8999998764 67777777776
Q ss_pred HHhhc------cc--cccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccc
Q 009352 130 QLLLH------KK--NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR 201 (537)
Q Consensus 130 ~L~~~------~~--~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~ 201 (537)
.+... .+ ....|.........+.++...+..... ..++++|||||++.+.
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 84 TISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE----------------------ELGEFIVAFDEAQYLR 141 (350)
T ss_dssp HSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH----------------------HHSCEEEEEETGGGGG
T ss_pred HHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh----------------------ccCCEEEEEeCHHHHh
Confidence 55320 00 000000000011233333322221111 1127899999999986
Q ss_pred ccC--CCCChHHHHHhhhhhcCCCcEEEEEEeCCCc--ccc---ccC---CCCCCCceeecCCCCHHHHHHHHHh
Q 009352 202 EWD--KSSSILPFLFGLSDILKMPEVGMIFISSTSP--DTY---HSN---TGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 202 ~~d--~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~--~~f---~~r---~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+++ ...+++..|..+.+.. +++.+|++++... ..+ ... ...+....+.++|++.+|+.+++..
T Consensus 142 ~~~~~~~~~~~~~L~~~~~~~--~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~ 214 (350)
T 2qen_A 142 FYGSRGGKELLALFAYAYDSL--PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKR 214 (350)
T ss_dssp GBTTTTTHHHHHHHHHHHHHC--TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHH
T ss_pred ccCccchhhHHHHHHHHHHhc--CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHH
Confidence 421 1135566666665543 5799999876532 222 110 1011224899999999999999953
No 8
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.38 E-value=1.4e-12 Score=120.67 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=97.8
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l----------~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.++||++++.++...+.. ....+++|+||+|||||++++.+++.+ +.++++++|.....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 91 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-------- 91 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT--------
T ss_pred cccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc--------
Confidence 4689999999999999866 234579999999999999999999986 45677787732110
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--- 204 (537)
+. ....++...++.++..+.. .+.+.+|||||+|.+....
T Consensus 92 -----~~--------------~~~~~~~~~~~~~~~~~~~------------------~~~~~vl~iDe~~~l~~~~~~~ 134 (195)
T 1jbk_A 92 -----GA--------------KYRGEFEERLKGVLNDLAK------------------QEGNVILFIDELHTMVGAGKAD 134 (195)
T ss_dssp -----TT--------------CSHHHHHHHHHHHHHHHHH------------------STTTEEEEEETGGGGTT-----
T ss_pred -----cC--------------CccccHHHHHHHHHHHHhh------------------cCCCeEEEEeCHHHHhccCccc
Confidence 00 0111222233333332211 2346789999999996311
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCCc--------cccccCCCCCCCceeecCCCCHHHHHHHH
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSP--------DTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~--------~~f~~r~~~~~p~~I~FppYt~~el~~IL 264 (537)
....+...|..+.+. .++.+|++++... ..+.+|. ..|+|++++.+|..+||
T Consensus 135 ~~~~~~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~r~-----~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 135 GAMDAGNMLKPALAR---GELHCVGATTLDEYRQYIEKDAALERRF-----QKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -CCCCHHHHHHHHHT---TSCCEEEEECHHHHHHHTTTCHHHHTTE-----EEEECCCCCHHHHHTTC
T ss_pred chHHHHHHHHHhhcc---CCeEEEEeCCHHHHHHHHhcCHHHHHHh-----ceeecCCCCHHHHHHHh
Confidence 113444455444443 4678888887642 2233332 36999999999999886
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.37 E-value=9.9e-12 Score=117.66 Aligned_cols=185 Identities=11% Similarity=0.104 Sum_probs=113.5
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
+.+.||+.++..|..++... ..++++|+||+|||||++++.+.+.+ ...++.++|....+...+.+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 87 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH------- 87 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHH-------
T ss_pred HHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHH-------
Confidence 46899999999999998763 33469999999999999999999876 24577778765444322211
Q ss_pred hccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 133 LHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 133 ~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
.+..+.... ......+.+|||||+|.+.. .....
T Consensus 88 ----------------------------~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~-----~~~~~ 121 (226)
T 2chg_A 88 ----------------------------KIKEFARTA-------------PIGGAPFKIIFLDEADALTA-----DAQAA 121 (226)
T ss_dssp ----------------------------HHHHHHTSC-------------CSTTCSCEEEEEETGGGSCH-----HHHHH
T ss_pred ----------------------------HHHHHhccc-------------CCCccCceEEEEeChhhcCH-----HHHHH
Confidence 111111000 00123567999999999853 23455
Q ss_pred HHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhccccccC
Q 009352 213 LFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 213 L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~~~r 290 (537)
|.++.+... .++.+|++++.. +.+......+. ..+.|++++.+|+.+++..... ...+.+..+..++... .+
T Consensus 122 l~~~l~~~~-~~~~~i~~~~~~-~~~~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~---~g 195 (226)
T 2chg_A 122 LRRTMEMYS-KSCRFILSCNYV-SRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS---GG 195 (226)
T ss_dssp HHHHHHHTT-TTEEEEEEESCG-GGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH---TT
T ss_pred HHHHHHhcC-CCCeEEEEeCCh-hhcCHHHHHhC-ceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CC
Confidence 666555432 568888888764 23322111111 3899999999999999953211 1123344444444322 34
Q ss_pred CHHHHHHHHHHhh
Q 009352 291 RVDELSTAFSLLF 303 (537)
Q Consensus 291 ~l~~L~~~~~~lw 303 (537)
++..+...+..++
T Consensus 196 ~~r~l~~~l~~~~ 208 (226)
T 2chg_A 196 DFRKAINALQGAA 208 (226)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666665555553
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=2.2e-11 Score=126.86 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=103.4
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|=++++++|...+.-. ..+...+++|||||||||+++++++.+++.+++.|++.+..+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~----- 222 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY----- 222 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS-----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc-----
Confidence 56788899999988765331 12334599999999999999999999999999999987654320
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
-| +-...++.++... + ...++||+|||+|.+....
T Consensus 223 -------------vG-----------ese~~vr~lF~~A----r---------------~~aP~IIFiDEiDai~~~R~~ 259 (405)
T 4b4t_J 223 -------------IG-----------EGSRMVRELFVMA----R---------------EHAPSIIFMDEIDSIGSTRVE 259 (405)
T ss_dssp -------------TT-----------HHHHHHHHHHHHH----H---------------HTCSEEEEEESSSCCTTSCSC
T ss_pred -------------cc-----------hHHHHHHHHHHHH----H---------------HhCCceEeeecchhhccCCCC
Confidence 01 1112344454432 1 2357899999999996421
Q ss_pred CC-------CChHHHHHhhhh-hcCCCcEEEEEEeCCCc--cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 KS-------SSILPFLFGLSD-ILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ~~-------~~lL~~L~rl~e-~~~~~~l~vI~Is~~~~--~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.. ..++..|+...+ +....++.||+.+|.++ |.-+.|.|. ....|+|+..+.++-.+||..
T Consensus 260 ~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGR-fD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 260 GSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGR-IDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp SSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTS-SCCEEECCCCCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCc-CceEEEcCCcCHHHHHHHHHH
Confidence 00 113344443322 22234577777777753 332334443 335999999999999999853
No 11
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.34 E-value=7.9e-12 Score=125.59 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=53.6
Q ss_pred HHhhcCCChHHHHHHHHHHHccc------------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009352 55 DLLSRFPGRRVQILELLRLLGTL------------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~------------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s 119 (537)
.+.+.++|++..+..|...+... .....+++|+||||||||++++.+.+.++.++++++|..+.+
T Consensus 12 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 12 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (310)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred HHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence 34567899999999998877541 123457999999999999999999999999999999987654
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=6.2e-11 Score=120.98 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=114.5
Q ss_pred HhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc-----CCHHHHHHHHHHH
Q 009352 56 LLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC-----YSPRILFESILNQ 130 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~-----~s~~~l~~~Il~~ 130 (537)
.+..|+||+++++.|.. +.. +.++|+|++|+|||++++.+++.++..++|++|... .+...++..+.+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKE 84 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHH
Confidence 46789999999999999 764 589999999999999999999998878899998864 4667788877776
Q ss_pred Hhhccc---------cccCCCCc-----c-----ccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEE
Q 009352 131 LLLHKK---------NAFNGYSS-----A-----KRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIY 191 (537)
Q Consensus 131 L~~~~~---------~~~~g~~~-----~-----~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~v 191 (537)
+..... ....|... . .....+ ..+++. +.+ ... ++++
T Consensus 85 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~----l~~------------~~~-~~~v 140 (357)
T 2fna_A 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSF-------ANLLES----FEQ------------ASK-DNVI 140 (357)
T ss_dssp HHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCH-------HHHHHH----HHH------------TCS-SCEE
T ss_pred HHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhH-------HHHHHH----HHh------------cCC-CCeE
Confidence 632100 00000000 0 001112 222222 111 012 3789
Q ss_pred EEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc--cccc--cCCC----CCCCceeecCCCCHHHHHHH
Q 009352 192 LIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP--DTYH--SNTG----YVAPIHVYFPECTEDDLRQI 263 (537)
Q Consensus 192 lVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~--~~f~--~r~~----~~~p~~I~FppYt~~el~~I 263 (537)
|||||++.+.+. ...+++..|.++.+.. +++.+|++++... ..++ .... .+....|.++|++.+|+.++
T Consensus 141 lvlDe~~~~~~~-~~~~~~~~l~~~~~~~--~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 141 IVLDEAQELVKL-RGVNLLPALAYAYDNL--KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp EEEETGGGGGGC-TTCCCHHHHHHHHHHC--TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred EEEECHHHhhcc-CchhHHHHHHHHHHcC--CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 999999998652 1256677776666552 4799999887632 2221 1111 11125899999999999999
Q ss_pred HH
Q 009352 264 FM 265 (537)
Q Consensus 264 L~ 265 (537)
+.
T Consensus 218 l~ 219 (357)
T 2fna_A 218 LR 219 (357)
T ss_dssp HH
T ss_pred HH
Confidence 95
No 13
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.5e-10 Score=122.14 Aligned_cols=158 Identities=19% Similarity=0.239 Sum_probs=100.1
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|=++++.+|...+.-. ..+...+++|||||||||+++++++.+++.++++|+|.+..+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~----- 255 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY----- 255 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS-----
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc-----
Confidence 45778899998887765431 12234599999999999999999999999999999987654310
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
.| +-...++.++.. .+ ...++||+|||+|.+....
T Consensus 256 -------------~G-----------ese~~ir~~F~~----A~---------------~~~P~IifiDEiDai~~~R~~ 292 (437)
T 4b4t_L 256 -------------IG-----------ESARIIREMFAY----AK---------------EHEPCIIFMDEVDAIGGRRFS 292 (437)
T ss_dssp -------------SS-----------HHHHHHHHHHHH----HH---------------HSCSEEEEEECCCSSSCCCSS
T ss_pred -------------ch-----------HHHHHHHHHHHH----HH---------------hcCCceeeeeccccccccccc
Confidence 11 101123334432 11 2357899999999996421
Q ss_pred -CC---C---ChHHHHHhhhh-hcCCCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHH
Q 009352 205 -KS---S---SILPFLFGLSD-ILKMPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 205 -~~---~---~lL~~L~rl~e-~~~~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.. . ..+..|+...+ .....++.||+.+|.+ +.+++ |.|. ....|+||.++.++-.+||.
T Consensus 293 ~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp-~~LDpAllRpGR-fD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 293 EGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRP-DTLDPALLRPGR-LDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp SCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESST-TSSCTTTTSTTS-EEEEECCCCCCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCc-hhhCHHHhCCCc-cceeeecCCcCHHHHHHHHH
Confidence 00 1 12333333322 2223457777777764 44433 3332 33589999999999888885
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.28 E-value=3e-11 Score=123.14 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=98.8
Q ss_pred hcCCChHHHHHHHHHHHc----------ccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLG----------TLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~----------~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.|.+...++|..++. ....+..+++||||||||||++++++.++++.++++++|.+..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-------- 89 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-------- 89 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT--------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh--------
Confidence 468899999999988772 11123346999999999999999999999999999999854211
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--- 204 (537)
.. ..+....++.++... + ...+.||+|||+|.|....
T Consensus 90 --~~-------------------~g~~~~~~~~~f~~a----~---------------~~~~~vl~iDEid~l~~~~~~~ 129 (322)
T 3eie_A 90 --KW-------------------MGESEKLVKQLFAMA----R---------------ENKPSIIFIDQVDALTGTRGEG 129 (322)
T ss_dssp --TT-------------------GGGHHHHHHHHHHHH----H---------------HTSSEEEEEECGGGGSCC----
T ss_pred --cc-------------------cchHHHHHHHHHHHH----H---------------hcCCeEEEechhhhhhccCCCC
Confidence 00 011112233333321 1 1245789999999996421
Q ss_pred ---CCCChHHHHHhhhhhc--CCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 ---KSSSILPFLFGLSDIL--KMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ---~~~~lL~~L~rl~e~~--~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
....+...|+...+.. ...++.||..+|.+ +.+.+....+....|+|+.++.++..+|+..
T Consensus 130 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~-~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~ 195 (322)
T 3eie_A 130 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP-WQLDSAIRRRFERRIYIPLPDLAARTTMFEI 195 (322)
T ss_dssp --CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG-GGSCHHHHHHCCEEEECCCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccCCceEEEEecCCh-hhCCHHHHcccCeEEEeCCCCHHHHHHHHHH
Confidence 1112344454443322 12356666667653 3332111112235899999999999999954
No 15
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=6.6e-12 Score=136.32 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=108.4
Q ss_pred hcCCChHHHHHHHHHHHcccC---------------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLN---------------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRI 122 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~---------------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~ 122 (537)
+.+.|++.++++|..++.... ...++++|+||||||||++++.++++++.+++++||.+..+...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 458999999999999986521 12356999999999999999999999999999999998877643
Q ss_pred HHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccc
Q 009352 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (537)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~ 202 (537)
+ +..+...... ..+.+ .+....+.+ ...+++.||||||+|.|..
T Consensus 119 ~-~~~i~~~~~~--------------~~~~~-------~~~~~~~~~--------------~~~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 119 L-NAGVKNALDN--------------MSVVG-------YFKHNEEAQ--------------NLNGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp H-HHTGGGGTTB--------------CCSTT-------TTTC----C--------------CSSTTSEEEEECSGGGCCT
T ss_pred H-HHHHHHHhcc--------------ccHHH-------HHhhhhhhh--------------hccCCCeEEEEECCCccch
Confidence 2 2111111000 00111 110000000 0124567999999999975
Q ss_pred cCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 203 ~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.+ +..+..|.++.+.. +..+|+|+++.....+.... +....|.|++++.+++.++|..
T Consensus 163 ~~--~~~l~~L~~~l~~~---~~~iIli~~~~~~~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~ 220 (516)
T 1sxj_A 163 GD--RGGVGQLAQFCRKT---STPLILICNERNLPKMRPFD-RVCLDIQFRRPDANSIKSRLMT 220 (516)
T ss_dssp TS--TTHHHHHHHHHHHC---SSCEEEEESCTTSSTTGGGT-TTSEEEECCCCCHHHHHHHHHH
T ss_pred hh--HHHHHHHHHHHHhc---CCCEEEEEcCCCCccchhhH-hceEEEEeCCCCHHHHHHHHHH
Confidence 32 55667777766653 46688898875422221111 1235899999999999999853
No 16
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.27 E-value=2.3e-11 Score=122.50 Aligned_cols=194 Identities=12% Similarity=0.097 Sum_probs=115.6
Q ss_pred hcCCChHHHHHHHHHHHccc-------------CCCCCCeEEECCCCCCHHHHHHHHHHhcC-------CCeEEEecccc
Q 009352 58 SRFPGRRVQILELLRLLGTL-------------NSSMPPLFVYGSASTGKTSIIIQVFRHLS-------RPFVYTSCLSC 117 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-------------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~-------~~~~~inc~~~ 117 (537)
..++|.+...+.|..++... ..+..+++|+||||||||++++.+.+.+. .++++++|.+.
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 46999999999988776421 12345699999999999999999998873 37888887553
Q ss_pred CCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCC
Q 009352 118 YSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNF 197 (537)
Q Consensus 118 ~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~ 197 (537)
.+. + .|.. ...+...+.. . ...+|+|||+
T Consensus 111 ~~~----------~--------~g~~-----------~~~~~~~~~~----~------------------~~~vl~iDEi 139 (309)
T 3syl_A 111 VGQ----------Y--------IGHT-----------APKTKEVLKR----A------------------MGGVLFIDEA 139 (309)
T ss_dssp CCS----------S--------TTCH-----------HHHHHHHHHH----H------------------TTSEEEEETG
T ss_pred hhh----------c--------cccc-----------HHHHHHHHHh----c------------------CCCEEEEECh
Confidence 211 0 0100 0112223321 0 1238899999
Q ss_pred CcccccC----CCCChHHHHHhhhhhcCCCcEEEEEEeCCCc-cccc---cCCCCCCCceeecCCCCHHHHHHHHHhcC-
Q 009352 198 ELVREWD----KSSSILPFLFGLSDILKMPEVGMIFISSTSP-DTYH---SNTGYVAPIHVYFPECTEDDLRQIFMRNQ- 268 (537)
Q Consensus 198 D~L~~~d----~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~-~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~~r- 268 (537)
|.|.... ....++..|+.+.+-.. .++.+|++++... +.+. +...++.+..|+|++|+.+++.+|+....
T Consensus 140 d~l~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 140 YYLYRPDNERDYGQEAIEILLQVMENNR-DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp GGSCCCC---CCTHHHHHHHHHHHHHCT-TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred hhhccCCCcccccHHHHHHHHHHHhcCC-CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 9995321 23566777887766543 4688888887532 2221 11112233689999999999999995321
Q ss_pred -CChhhhhHHHHHHhhccc-----cccCCHHHHHHHHHHhh
Q 009352 269 -ANQKLYSSFLDIVLRPFC-----RITKRVDELSTAFSLLF 303 (537)
Q Consensus 269 -~~~~l~~~~~~~il~~~~-----~~~r~l~~L~~~~~~lw 303 (537)
....+.+..++.+.+.+. ...+++.++..++..+.
T Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 219 DQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 112233344444443322 22234555555555543
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.27 E-value=2.1e-11 Score=121.57 Aligned_cols=160 Identities=15% Similarity=0.122 Sum_probs=99.3
Q ss_pred hhcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~ 125 (537)
.+.++|.+.++.+|..++... .....+++||||||||||++++++.+.++.++++++|.+..+..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~---- 91 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF---- 91 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc----
Confidence 356899999999998887432 13345699999999999999999999999999999986543210
Q ss_pred HHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC
Q 009352 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (537)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~ 205 (537)
..+....++.++... + ...+.||+|||+|.+.....
T Consensus 92 -------------------------~~~~~~~~~~~~~~~----~---------------~~~~~vl~iDEid~l~~~~~ 127 (285)
T 3h4m_A 92 -------------------------IGEGASLVKDIFKLA----K---------------EKAPSIIFIDEIDAIAAKRT 127 (285)
T ss_dssp -------------------------TTHHHHHHHHHHHHH----H---------------HTCSEEEEEETTHHHHBCCS
T ss_pred -------------------------cchHHHHHHHHHHHH----H---------------HcCCeEEEEECHHHhcccCc
Confidence 001112233333221 1 12457999999999953110
Q ss_pred ------CC---ChHHHHHhhhhh-cCCCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 206 ------SS---SILPFLFGLSDI-LKMPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 206 ------~~---~lL~~L~rl~e~-~~~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.. ..+..++...+. ....++.||+.+|.+ +.+.. +.+ +....++|++++.++..+|+..
T Consensus 128 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~-~~l~~~l~~~~-Rf~~~i~~~~p~~~~r~~il~~ 199 (285)
T 3h4m_A 128 DALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP-DILDPAILRPG-RFDRIIEVPAPDEKGRLEILKI 199 (285)
T ss_dssp SSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG-GGBCHHHHSTT-SEEEEEECCCCCHHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc-hhcCHHHcCCC-cCCeEEEECCCCHHHHHHHHHH
Confidence 11 223333322221 112357777777653 33321 111 2224899999999999999953
No 18
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.26 E-value=3.1e-11 Score=126.24 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=112.2
Q ss_pred hcCCChHHHHHHHHHHHccc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.|.+.++..|..++... ..+..+++||||||||||++++++.+.++.++++++|.+..+.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~------- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK------- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC----------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc-------
Confidence 56899999999999887221 1234579999999999999999999999999999999765431
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--- 204 (537)
..+. ....++.++... + ...+.||+|||+|.|....
T Consensus 188 ---~~g~-------------------~~~~~~~~~~~a----~---------------~~~~~il~iDEid~l~~~~~~~ 226 (389)
T 3vfd_A 188 ---YVGE-------------------GEKLVRALFAVA----R---------------ELQPSIIFIDQVDSLLCERREG 226 (389)
T ss_dssp --------------------------CHHHHHHHHHHH----H---------------HSSSEEEEEETGGGGC------
T ss_pred ---ccch-------------------HHHHHHHHHHHH----H---------------hcCCeEEEEECchhhcccCCCc
Confidence 0000 001122333321 1 1235689999999994311
Q ss_pred ---CCCChHHHHHhhhhhcC---CCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhh
Q 009352 205 ---KSSSILPFLFGLSDILK---MPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKL 273 (537)
Q Consensus 205 ---~~~~lL~~L~rl~e~~~---~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l 273 (537)
....++..|+...+-.. ..++.||+.+|.+. ..+.+|. ...|+|+.++.++..+||.... ....+
T Consensus 227 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~----~~~i~i~~p~~~~r~~il~~~~~~~~~~l 302 (389)
T 3vfd_A 227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRF----IKRVYVSLPNEETRLLLLKNLLCKQGSPL 302 (389)
T ss_dssp --CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTC----CEEEECCCCCHHHHHHHHHHHHTTSCCCS
T ss_pred cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCc----ceEEEcCCcCHHHHHHHHHHHHHhcCCCC
Confidence 11223334444333211 12466666776532 2333433 2579999999999999995321 11223
Q ss_pred hhHHHHHHhhccccccCCHHHHHHHHHHhhhh
Q 009352 274 YSSFLDIVLRPFCRITKRVDELSTAFSLLFKR 305 (537)
Q Consensus 274 ~~~~~~~il~~~~~~~r~l~~L~~~~~~lw~~ 305 (537)
....+..+.....++.+ ..|..++...|..
T Consensus 303 ~~~~~~~la~~~~g~~~--~~l~~L~~~a~~~ 332 (389)
T 3vfd_A 303 TQKELAQLARMTDGYSG--SDLTALAKDAALG 332 (389)
T ss_dssp CHHHHHHHHHHTTTCCH--HHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHcCCCCH--HHHHHHHHHHHHH
Confidence 44455555544444433 2344445555554
No 19
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.9e-10 Score=120.26 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=101.5
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+-|=++++++|...+.-. ..+...+++|||||||||+++++++.+++.+++.|++.+..+..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~----- 256 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY----- 256 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS-----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc-----
Confidence 56788899999988865321 11223499999999999999999999999999999986654310
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
-| +-...++.++.. .+ ...++||+|||+|.+....
T Consensus 257 -------------vG-----------esek~ir~lF~~----Ar---------------~~aP~IIfiDEiDai~~~R~~ 293 (437)
T 4b4t_I 257 -------------LG-----------DGPRLCRQIFKV----AG---------------ENAPSIVFIDEIDAIGTKRYD 293 (437)
T ss_dssp -------------SS-----------HHHHHHHHHHHH----HH---------------HTCSEEEEEEEESSSSCCCSC
T ss_pred -------------Cc-----------hHHHHHHHHHHH----HH---------------hcCCcEEEEehhhhhcccCCC
Confidence 01 111224444432 11 2357899999999996421
Q ss_pred ---CC-C---ChHHHHHhhhhhc-CCCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 ---KS-S---SILPFLFGLSDIL-KMPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ---~~-~---~lL~~L~rl~e~~-~~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.+ . ..+..|+...+-. ...++.||+.+|.+ +.+++ |.| +...+|+|+..+.++-.+||..
T Consensus 294 ~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp-d~LDpALlRpG-RfD~~I~v~lPd~~~R~~Il~~ 364 (437)
T 4b4t_I 294 SNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI-ETLDPALIRPG-RIDRKILFENPDLSTKKKILGI 364 (437)
T ss_dssp SSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS-TTCCTTSSCTT-TEEEEECCCCCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh-hhcCHHHhcCC-ceeEEEEcCCcCHHHHHHHHHH
Confidence 01 1 1233343333322 23457777777764 44433 333 2335899999999999999853
No 20
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.26 E-value=5.5e-11 Score=122.82 Aligned_cols=220 Identities=14% Similarity=0.124 Sum_probs=115.0
Q ss_pred hhcCCChHHHHHHHHHHH---cccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCC----HHHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLL---GTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYS----PRILFESI 127 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll---~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~s----~~~l~~~I 127 (537)
.+.|+|++.+...+..++ .....++.+++||||||||||++++++.+.++. +++.++|..+.+ ...++...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQA 122 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHH
Confidence 467999999987755444 332223357999999999999999999999874 788888876443 33344444
Q ss_pred HHHHhhccc-----------------cccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEE
Q 009352 128 LNQLLLHKK-----------------NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMI 190 (537)
Q Consensus 128 l~~L~~~~~-----------------~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~ 190 (537)
+....+... ....+.... ......++...++..+......... .| .....+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~------~g----~~~~~~~ 191 (368)
T 3uk6_A 123 FRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLAL-FSGDTGEIKSEVREQINAKVAEWRE------EG----KAEIIPG 191 (368)
T ss_dssp HHHSBEECC------CEEHHHHHHHTC----CCSC-C-------CHHHHHHHHHHHHHHHH------HT----C---CBC
T ss_pred HHHHHHHHhhhhccccccHhhhhhhhcccccchhh-ccCcccccHHHHHHHHHHHHHHhhh------hc----cccccCc
Confidence 333211100 000000000 0001112233344455443332111 00 0011245
Q ss_pred EEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCC-----------Cc----cccccCCCCCCCceeecCCC
Q 009352 191 YLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISST-----------SP----DTYHSNTGYVAPIHVYFPEC 255 (537)
Q Consensus 191 vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~-----------~~----~~f~~r~~~~~p~~I~FppY 255 (537)
||+|||+|.|.. +.+..|.++.+.... .+ +|+.++. .+ +.+.+|. ..|+|+||
T Consensus 192 vl~IDEi~~l~~-----~~~~~L~~~le~~~~-~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-----~~i~~~~~ 259 (368)
T 3uk6_A 192 VLFIDEVHMLDI-----ESFSFLNRALESDMA-PV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRL-----LIVSTTPY 259 (368)
T ss_dssp EEEEESGGGSBH-----HHHHHHHHHTTCTTC-CE-EEEEESCSEEECBTSSCEEETTCCHHHHTTE-----EEEEECCC
T ss_pred eEEEhhccccCh-----HHHHHHHHHhhCcCC-Ce-eeeecccceeeeeccCCCCcccCCHHHHhhc-----cEEEecCC
Confidence 899999999853 455666676665322 22 3333331 11 2333443 35899999
Q ss_pred CHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccCCHHHHHHHHHH
Q 009352 256 TEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITKRVDELSTAFSL 301 (537)
Q Consensus 256 t~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r~l~~L~~~~~~ 301 (537)
+.+|+.+||.... ....+.+..++.++....+ +++.++..++..
T Consensus 260 ~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~ 305 (368)
T 3uk6_A 260 SEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLE--TSLRYAIQLITA 305 (368)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH--SCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence 9999999996321 1122444455555444431 345554444444
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.24 E-value=5.3e-11 Score=128.09 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=104.9
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|.+.++.+|..++... ..+..+++||||||||||++++++.++++.+++++||.+..+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~------- 276 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS------- 276 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT-------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh-------
Confidence 45899999999999887543 234456999999999999999999999999999999854321
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC-
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK- 205 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~- 205 (537)
.+ +.+....++.++.... .+.+.+|+|||+|.|.....
T Consensus 277 ---~~-------------------~g~~~~~~~~~f~~A~-------------------~~~p~iLfLDEId~l~~~~~~ 315 (489)
T 3hu3_A 277 ---KL-------------------AGESESNLRKAFEEAE-------------------KNAPAIIFIDELDAIAPKREK 315 (489)
T ss_dssp ---SC-------------------TTHHHHHHHHHHHHHH-------------------HTCSEEEEEESHHHHCBCTTS
T ss_pred ---hh-------------------cchhHHHHHHHHHHHH-------------------hcCCcEEEecchhhhcccccc
Confidence 00 0111122333443321 23467999999999974210
Q ss_pred -----CCChHHHHHhhhhhcC-CCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 206 -----SSSILPFLFGLSDILK-MPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 206 -----~~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
...++..|+++.+-.. ..++.||..+|.+ +.+.. +.+ +....|+|+.++.++..+||...
T Consensus 316 ~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~-~~Ld~al~r~g-Rf~~~i~i~~P~~~eR~~IL~~~ 384 (489)
T 3hu3_A 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP-NSIDPALRRFG-RFDREVDIGIPDATGRLEILQIH 384 (489)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG-GGBCGGGGSTT-SSCEEEECCCCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhccccCCceEEEEecCCc-cccCHHHhCCC-cCceEEEeCCCCHHHHHHHHHHH
Confidence 0135566777655432 2356677777764 22322 222 22357999999999999999643
No 22
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.4e-10 Score=122.34 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=100.1
Q ss_pred hcCCChHHHHHHHHHHHcc-----------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGT-----------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~-----------~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|=+++.++|...+.- ...+...+++|||||||||+++++++.+++.+++.|+|.+..+..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~----- 283 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY----- 283 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS-----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc-----
Confidence 4578889999888875432 112334599999999999999999999999999999987654310
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
-| +-...++.++... + ...++||+|||+|.+....
T Consensus 284 -------------vG-----------esek~ir~lF~~A----r---------------~~aP~IIfiDEiDai~~~R~~ 320 (467)
T 4b4t_H 284 -------------VG-----------EGARMVRELFEMA----R---------------TKKACIIFFDEIDAVGGARFD 320 (467)
T ss_dssp -------------SS-----------HHHHHHHHHHHHH----H---------------HTCSEEEEEECCTTTSBCCSS
T ss_pred -------------CC-----------HHHHHHHHHHHHH----H---------------hcCCceEeecccccccccccC
Confidence 11 1112344444432 1 2357899999999996421
Q ss_pred CCC-------ChHHHHHh-hhhhcCCCcEEEEEEeCCCc--cccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 205 KSS-------SILPFLFG-LSDILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 205 ~~~-------~lL~~L~r-l~e~~~~~~l~vI~Is~~~~--~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
... ..+..|+. +.......++.||+.+|.++ |.-+.|.|. ...+|+|+..+.++-.+||.
T Consensus 321 ~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR-FD~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 321 DGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGR-IDRKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp SSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTT-CCEEECCCCCCHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcccc-ccEEEEeCCcCHHHHHHHHH
Confidence 101 11222222 22222234567777777643 222334442 33699999999999999985
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.23 E-value=1.9e-10 Score=112.75 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=92.6
Q ss_pred hcCCChHHHHHHHHHHHcccC----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLN----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~----------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.|.+....+|..++.... ....+++||||||||||++++++.++++.++++++|.+..+..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~------ 79 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI------ 79 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS------
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc------
Confidence 457788888777766553210 2234699999999999999999999999999999997653210
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--- 204 (537)
.| .....++.++.... ...+.+|+|||+|.|....
T Consensus 80 ------------~~-----------~~~~~~~~~~~~a~-------------------~~~~~vl~iDeid~l~~~~~~~ 117 (262)
T 2qz4_A 80 ------------GG-----------LGAARVRSLFKEAR-------------------ARAPCIVYIDEIDAVGKKRSTT 117 (262)
T ss_dssp ------------TT-----------HHHHHHHHHHHHHH-------------------HTCSEEEEEECC----------
T ss_pred ------------cC-----------hhHHHHHHHHHHHH-------------------hcCCeEEEEeCcchhhcccccc
Confidence 00 00112333333211 1245799999999994211
Q ss_pred -------CCCChHHHHHhhhhhc-CCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 205 -------KSSSILPFLFGLSDIL-KMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 205 -------~~~~lL~~L~rl~e~~-~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.....+..|+...+.. ...++.+|+.+|.+. +.+.. .+ +....++|++++.+|..+|+.
T Consensus 118 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~-~~-R~~~~i~i~~p~~~~r~~il~ 187 (262)
T 2qz4_A 118 MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMR-PG-RLDRHVFIDLPTLQERREIFE 187 (262)
T ss_dssp ---------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGS-TT-SCCEEEECCSCCHHHHHHHHH
T ss_pred ccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhc-CC-cCCeEEEeCCcCHHHHHHHHH
Confidence 1123444444432221 123567777776643 22222 11 223588999999999999985
No 24
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.22 E-value=9.1e-11 Score=119.24 Aligned_cols=145 Identities=14% Similarity=0.220 Sum_probs=97.2
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
+.+.|+++.+..|...+... ..++ ++++||||||||++++++.+.++.+++++||.... .. .
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~--~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~-~------------- 88 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG--KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-ID-F------------- 88 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT--CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HH-H-------------
T ss_pred HHHhCcHHHHHHHHHHHHcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HH-H-------------
Confidence 45889999999999998752 2334 67888899999999999999999899999985532 11 1
Q ss_pred cccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhh
Q 009352 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (537)
Q Consensus 137 ~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl 216 (537)
++..+..+.... ...+...+|||||+|.+.. .+....|.++
T Consensus 89 ---------------------i~~~~~~~~~~~--------------~~~~~~~vliiDEi~~l~~----~~~~~~L~~~ 129 (324)
T 3u61_B 89 ---------------------VRGPLTNFASAA--------------SFDGRQKVIVIDEFDRSGL----AESQRHLRSF 129 (324)
T ss_dssp ---------------------HHTHHHHHHHBC--------------CCSSCEEEEEEESCCCGGG----HHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHhhc--------------ccCCCCeEEEEECCcccCc----HHHHHHHHHH
Confidence 111222111100 0123567999999999961 1234556666
Q ss_pred hhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHH
Q 009352 217 SDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (537)
Q Consensus 217 ~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL 264 (537)
.|..+ .++.+|+++|... +.+.+|. ..+.|++++.+|..+|+
T Consensus 130 le~~~-~~~~iI~~~n~~~~l~~~l~sR~-----~~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 130 MEAYS-SNCSIIITANNIDGIIKPLQSRC-----RVITFGQPTDEDKIEMM 174 (324)
T ss_dssp HHHHG-GGCEEEEEESSGGGSCTTHHHHS-----EEEECCCCCHHHHHHHH
T ss_pred HHhCC-CCcEEEEEeCCccccCHHHHhhC-----cEEEeCCCCHHHHHHHH
Confidence 55532 4688999888743 2333333 47999999999976665
No 25
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.22 E-value=8.6e-11 Score=116.53 Aligned_cols=193 Identities=10% Similarity=0.111 Sum_probs=109.9
Q ss_pred hhcCCChHHHHHHHHH-------HHccc-CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009352 57 LSRFPGRRVQILELLR-------LLGTL-NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~-------ll~~~-~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il 128 (537)
...+.++...+.++.. .+... ..+..+++|+||||||||++++++.+.++.++++++|.+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~---------- 101 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM---------- 101 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGC----------
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHh----------
Confidence 3567777777665555 23211 12334699999999999999999999999999999986411
Q ss_pred HHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC----
Q 009352 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---- 204 (537)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d---- 204 (537)
.|. ........++..++... ...+.+|+|||+|.|....
T Consensus 102 -----------~g~-------~~~~~~~~~~~~~~~~~-------------------~~~~~vl~iDEid~l~~~~~~~~ 144 (272)
T 1d2n_A 102 -----------IGF-------SETAKCQAMKKIFDDAY-------------------KSQLSCVVVDDIERLLDYVPIGP 144 (272)
T ss_dssp -----------TTC-------CHHHHHHHHHHHHHHHH-------------------TSSEEEEEECCHHHHTTCBTTTT
T ss_pred -----------cCC-------chHHHHHHHHHHHHHHH-------------------hcCCcEEEEEChhhhhccCCCCh
Confidence 111 01122222333443211 2357799999999984211
Q ss_pred -CCCChHHHHHhhhhhcC--CCcEEEEEEeCCCcccccc-CCCCCCCceeecCCCCH-HHHHHHHHhcCCChhhhhHHHH
Q 009352 205 -KSSSILPFLFGLSDILK--MPEVGMIFISSTSPDTYHS-NTGYVAPIHVYFPECTE-DDLRQIFMRNQANQKLYSSFLD 279 (537)
Q Consensus 205 -~~~~lL~~L~rl~e~~~--~~~l~vI~Is~~~~~~f~~-r~~~~~p~~I~FppYt~-~el~~IL~~~r~~~~l~~~~~~ 279 (537)
....++..|..+.+... ..++.||..++.+ +.+.. ....+....|+||+++. +++.+|+.... .+.+..+.
T Consensus 145 ~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~-~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~~~~~~~ 220 (272)
T 1d2n_A 145 RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK-DVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NFKDKERT 220 (272)
T ss_dssp BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH-HHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CSCHHHHH
T ss_pred hHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh-hhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CCCHHHHH
Confidence 12346666766655422 1234455555543 22221 11122246899999988 99999986432 23344445
Q ss_pred HHhhccccc--cCCHHHHHHHHH
Q 009352 280 IVLRPFCRI--TKRVDELSTAFS 300 (537)
Q Consensus 280 ~il~~~~~~--~r~l~~L~~~~~ 300 (537)
.+.....++ ..++.++...+.
T Consensus 221 ~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 221 TIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp HHHHHHTTSEEEECHHHHHHHHH
T ss_pred HHHHHhcCCCccccHHHHHHHHH
Confidence 554444332 224555554443
No 26
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.20 E-value=1.3e-10 Score=118.78 Aligned_cols=177 Identities=12% Similarity=0.121 Sum_probs=111.8
Q ss_pred hcCCChHHHHHHHHHHHccc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.+.|++..+..|..++... ..+.++++|+||||||||++++.+.+.++.+++.+||.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~------------- 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSG------------- 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHH-------------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchh-------------
Confidence 46899999999999988653 23446799999999999999999999999999999986532111
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
+ +...+.. .....+|+|||+|.+.. .....|+
T Consensus 96 ------------------~----~~~~~~~---------------------~~~~~vl~lDEi~~l~~-----~~~~~Ll 127 (338)
T 3pfi_A 96 ------------------D----LAAILTN---------------------LSEGDILFIDEIHRLSP-----AIEEVLY 127 (338)
T ss_dssp ------------------H----HHHHHHT---------------------CCTTCEEEEETGGGCCH-----HHHHHHH
T ss_pred ------------------H----HHHHHHh---------------------ccCCCEEEEechhhcCH-----HHHHHHH
Confidence 1 1112210 12345889999998853 3344444
Q ss_pred hhhhhc-----------------CCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChh
Q 009352 215 GLSDIL-----------------KMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQK 272 (537)
Q Consensus 215 rl~e~~-----------------~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~ 272 (537)
+..+-. ..|++.+|..+|..+ ..+..|. ...|+|++|+.+|+.+|+.... ....
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~----~~~i~l~~~~~~e~~~il~~~~~~~~~~ 203 (338)
T 3pfi_A 128 PAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRF----GMQFRLEFYKDSELALILQKAALKLNKT 203 (338)
T ss_dssp HHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTC----SEEEECCCCCHHHHHHHHHHHHHHTTCE
T ss_pred HHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhc----CEEeeCCCcCHHHHHHHHHHHHHhcCCC
Confidence 433321 123467777777632 2334443 3589999999999999995321 1112
Q ss_pred hhhHHHHHHhhccccccCCHHHHHHHHHHh
Q 009352 273 LYSSFLDIVLRPFCRITKRVDELSTAFSLL 302 (537)
Q Consensus 273 l~~~~~~~il~~~~~~~r~l~~L~~~~~~l 302 (537)
+.+..++.+.... .+++.++...+..+
T Consensus 204 ~~~~~~~~l~~~~---~G~~r~l~~~l~~~ 230 (338)
T 3pfi_A 204 CEEKAALEIAKRS---RSTPRIALRLLKRV 230 (338)
T ss_dssp ECHHHHHHHHHTT---TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---CcCHHHHHHHHHHH
Confidence 3344444444422 23555555555444
No 27
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.5e-11 Score=117.69 Aligned_cols=202 Identities=13% Similarity=0.100 Sum_probs=112.6
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~--~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
+.++||+.+++.|...+... .....++|+||+|||||++++.+++.+.... ....|..|.+.. .+....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 93 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR--------EIEQGR 93 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH--------HHHTTC
T ss_pred HHHhCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH--------HHhccC
Confidence 46899999999999998652 1123589999999999999999998875322 223444443211 111110
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
.....+. .+... .....++.+++ .+.. ....+++.+|||||+|.+.. ..+..|++
T Consensus 94 ~~~~~~~----~~~~~-~~~~~~~~~~~----~~~~-----------~~~~~~~~vlviDe~~~l~~-----~~~~~l~~ 148 (250)
T 1njg_A 94 FVDLIEI----DAASR-TKVEDTRDLLD----NVQY-----------APARGRFKVYLIDEVHMLSR-----HSFNALLK 148 (250)
T ss_dssp CSSEEEE----ETTCG-GGHHHHHHHHH----SCCC-----------SCSSSSSEEEEEETGGGSCH-----HHHHHHHH
T ss_pred CcceEEe----cCccc-ccHHHHHHHHH----Hhhh-----------chhcCCceEEEEECcccccH-----HHHHHHHH
Confidence 0000000 00000 11122333332 1110 01133568999999998842 34555666
Q ss_pred hhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccccccC
Q 009352 216 LSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 216 l~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~~~~r 290 (537)
+.+.. ..++.+|++++... ..+..+ ...|+|++++.+|+.+++.... ....+.+..++.++.... +
T Consensus 149 ~l~~~-~~~~~~i~~t~~~~~~~~~l~~r-----~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~---G 219 (250)
T 1njg_A 149 TLEEP-PEHVKFLLATTDPQKLPVTILSR-----CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE---G 219 (250)
T ss_dssp HHHSC-CTTEEEEEEESCGGGSCHHHHTT-----SEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHT---T
T ss_pred HHhcC-CCceEEEEEeCChHhCCHHHHHH-----hhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC---C
Confidence 55543 24688888887642 222333 2589999999999999995321 111233444444444332 3
Q ss_pred CHHHHHHHHHHh
Q 009352 291 RVDELSTAFSLL 302 (537)
Q Consensus 291 ~l~~L~~~~~~l 302 (537)
++..+...+..+
T Consensus 220 ~~~~~~~~~~~~ 231 (250)
T 1njg_A 220 SLRDALSLTDQA 231 (250)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555544
No 28
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.8e-10 Score=121.41 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=100.8
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|=+++.++|...+.-. ..+...+++|||||||||+++++++.+++.+++.|+|.+..+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~----- 246 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY----- 246 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS-----
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc-----
Confidence 56888899998888765421 12233499999999999999999999999999999987654310
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
-| +-...++.+|... + ...++||++||+|.+....
T Consensus 247 -------------~G-----------e~e~~ir~lF~~A----~---------------~~aP~IifiDEiD~i~~~R~~ 283 (428)
T 4b4t_K 247 -------------LG-----------EGPRMVRDVFRLA----R---------------ENAPSIIFIDEVDSIATKRFD 283 (428)
T ss_dssp -------------CS-----------HHHHHHHHHHHHH----H---------------HTCSEEEEEECTHHHHCSCSS
T ss_pred -------------cc-----------hhHHHHHHHHHHH----H---------------HcCCCeeechhhhhhhccccC
Confidence 01 1112344455432 1 2357899999999986421
Q ss_pred ---CCC----ChHHHHHhhhh-hcCCCcEEEEEEeCCCc--cccccCCCCCCCceeecC-CCCHHHHHHHHH
Q 009352 205 ---KSS----SILPFLFGLSD-ILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFP-ECTEDDLRQIFM 265 (537)
Q Consensus 205 ---~~~----~lL~~L~rl~e-~~~~~~l~vI~Is~~~~--~~f~~r~~~~~p~~I~Fp-pYt~~el~~IL~ 265 (537)
... .++..|+...+ +....++.||+.+|.++ |.-+.|.|. ...+|+|| ..+.++-.+|+.
T Consensus 284 ~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGR-fd~~I~~p~lPd~~~R~~Il~ 354 (428)
T 4b4t_K 284 AQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGR-LDRKIEFPSLRDRRERRLIFG 354 (428)
T ss_dssp SCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSS-EEEEEECCSSCCHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCc-ceEEEEcCCCCCHHHHHHHHH
Confidence 111 23444444333 22235677777777643 222334442 23589997 568888777774
No 29
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.2e-10 Score=122.94 Aligned_cols=158 Identities=19% Similarity=0.190 Sum_probs=99.4
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|=+++.++|...+... ..+...+++|||||||||+++++++.+++.+++.|++.+..+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~----- 255 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY----- 255 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC-----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc-----
Confidence 56788899999888753221 11233599999999999999999999999999999986644210
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
-| +-...++.++... + ...++||+|||+|.|....
T Consensus 256 -------------vG-----------ese~~ir~lF~~A----~---------------~~aP~IifiDEiDal~~~R~~ 292 (434)
T 4b4t_M 256 -------------IG-----------EGAKLVRDAFALA----K---------------EKAPTIIFIDELDAIGTKRFD 292 (434)
T ss_dssp -------------SS-----------HHHHHHHHHHHHH----H---------------HHCSEEEEEECTHHHHCCCSS
T ss_pred -------------cc-----------hHHHHHHHHHHHH----H---------------hcCCeEEeecchhhhhhccCC
Confidence 11 1112344444322 1 1247899999999996421
Q ss_pred ---CCC----ChHHHHHhhhhhc-CCCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHH
Q 009352 205 ---KSS----SILPFLFGLSDIL-KMPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 205 ---~~~----~lL~~L~rl~e~~-~~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.+. ..+..|+...+-. ...++.||+.+|. |+.+++ |.| +....|+||..+.++-.+||.
T Consensus 293 ~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr-p~~LD~AllRpG-RfD~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 293 SEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR-VDVLDPALLRSG-RLDRKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp GGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS-CCCCCTTTCSTT-SEEEEEECCCCCHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC-chhcCHhHhcCC-ceeEEEEeCCcCHHHHHHHHH
Confidence 000 1233333332222 1234666666666 444443 333 334699999999999999984
No 30
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.20 E-value=1.2e-10 Score=118.11 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=110.5
Q ss_pred hcCCChHHHHHHHHHHHcccC---CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLN---SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~---~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.|.|++..+..|...+.... ....+++|+||+|||||++++.+.+.++.++++++|........++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~--------- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAA--------- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHH---------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHH---------
Confidence 468999999999888876421 23467999999999999999999999999999999865433222111
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
.+.. ......+|+|||+|.+.. .....|+
T Consensus 83 --------------------------~l~~--------------------~~~~~~~l~lDEi~~l~~-----~~~~~L~ 111 (324)
T 1hqc_A 83 --------------------------ILAN--------------------SLEEGDILFIDEIHRLSR-----QAEEHLY 111 (324)
T ss_dssp --------------------------HHTT--------------------TCCTTCEEEETTTTSCCH-----HHHHHHH
T ss_pred --------------------------HHHH--------------------hccCCCEEEEECCccccc-----chHHHHH
Confidence 1100 011235889999998853 2233343
Q ss_pred hhhhhc-----------------CCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhh
Q 009352 215 GLSDIL-----------------KMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYS 275 (537)
Q Consensus 215 rl~e~~-----------------~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~ 275 (537)
++.+.. ..+++.+|+.++.. ..+.....++....+.|++++.+|+.+|+.... ....+.+
T Consensus 112 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~-~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~ 190 (324)
T 1hqc_A 112 PAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP-GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITE 190 (324)
T ss_dssp HHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC-SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCH
T ss_pred HHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc-ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 332221 01346777777764 233222222223589999999999999985421 1122334
Q ss_pred HHHHHHhhccccccCCHHHHHHHHHHh
Q 009352 276 SFLDIVLRPFCRITKRVDELSTAFSLL 302 (537)
Q Consensus 276 ~~~~~il~~~~~~~r~l~~L~~~~~~l 302 (537)
..++.++... .+++.++...+..+
T Consensus 191 ~~~~~l~~~~---~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 191 EAALEIGRRS---RGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHS---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 4444444332 23566666655554
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.19 E-value=1.5e-10 Score=116.04 Aligned_cols=194 Identities=15% Similarity=0.096 Sum_probs=111.8
Q ss_pred hcCCChHHHHHHHHHHHccc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.|.+..+..|...+... ..+..+++|+||||||||++++++..+++.++++++|.+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~------- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK------- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS-------
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc-------
Confidence 45899999999998876321 1234569999999999999999999999999999999654321
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--- 204 (537)
..| +....++.++.... ...+.+|+|||+|.+....
T Consensus 94 -----------~~~-----------~~~~~~~~~~~~~~-------------------~~~~~vl~iDEid~l~~~~~~~ 132 (297)
T 3b9p_A 94 -----------YVG-----------DGEKLVRALFAVAR-------------------HMQPSIIFIDEVDSLLSERSSS 132 (297)
T ss_dssp -----------SCS-----------CHHHHHHHHHHHHH-------------------HTCSEEEEEETGGGTSBCC---
T ss_pred -----------ccc-----------hHHHHHHHHHHHHH-------------------HcCCcEEEeccHHHhccccccC
Confidence 000 01112333332211 1245788999999996421
Q ss_pred ---CCCChHHHHHhhhhhcCC----CcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--Chh
Q 009352 205 ---KSSSILPFLFGLSDILKM----PEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQK 272 (537)
Q Consensus 205 ---~~~~lL~~L~rl~e~~~~----~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~ 272 (537)
....+...|+...+-... .++.||.++|.+. ..+..|. ...++|+.++.++..+|+..... ...
T Consensus 133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~----~~~i~~~~p~~~~r~~il~~~~~~~~~~ 208 (297)
T 3b9p_A 133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF----TKRVYVSLPDEQTRELLLNRLLQKQGSP 208 (297)
T ss_dssp --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC----CEEEECCCCCHHHHHHHHHHHHGGGSCC
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC----CeEEEeCCcCHHHHHHHHHHHHHhcCCC
Confidence 112233344444333211 2466666777632 2223333 25889999999999999853211 112
Q ss_pred hhhHHHHHHhhccccccCCHHHHHHHHHHhhhh
Q 009352 273 LYSSFLDIVLRPFCRITKRVDELSTAFSLLFKR 305 (537)
Q Consensus 273 l~~~~~~~il~~~~~~~r~l~~L~~~~~~lw~~ 305 (537)
+....++.+.....++.+ .+|..++...|..
T Consensus 209 ~~~~~~~~la~~~~g~~~--~~l~~l~~~a~~~ 239 (297)
T 3b9p_A 209 LDTEALRRLAKITDGYSG--SDLTALAKDAALE 239 (297)
T ss_dssp SCHHHHHHHHHHTTTCCH--HHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHcCCCCH--HHHHHHHHHHHHH
Confidence 333344444443333332 3444555555543
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.19 E-value=6.4e-10 Score=113.39 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=97.5
Q ss_pred hcCCChHHHHHHHHHHHcc-----c-----CCCCCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGT-----L-----NSSMPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~-----~-----~~~~~~l~I~G~~GtGKTsiv~~vl~~l-~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|-+...+.|...+.. . ..+...++||||||||||++++++.+++ +.++++++|.+..+.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~------ 85 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS------
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh------
Confidence 4577888888888776531 0 1223469999999999999999999998 778889998754321
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS 206 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~ 206 (537)
..|.+ ...++.++... + ...+.||+|||+|.|......
T Consensus 86 ------------~~g~~-----------~~~~~~lf~~a----~---------------~~~~~vl~iDEid~l~~~~~~ 123 (322)
T 1xwi_A 86 ------------WLGES-----------EKLVKNLFQLA----R---------------ENKPSIIFIDEIDSLCGSRSE 123 (322)
T ss_dssp ------------SCCSC-----------HHHHHHHHHHH----H---------------HTSSEEEEEETTTGGGCCSSS
T ss_pred ------------hhhHH-----------HHHHHHHHHHH----H---------------hcCCcEEEeecHHHhcccccc
Confidence 01110 11233343321 1 124679999999999532110
Q ss_pred --C----ChHHHHHhhhhhc--CCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 207 --S----SILPFLFGLSDIL--KMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 207 --~----~lL~~L~rl~e~~--~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
. .++..|+...+-. ...++.||..+|.+. +.+.+|. ...|+|+.++.++..+||..
T Consensus 124 ~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf----~~~i~i~~P~~~~r~~il~~ 190 (322)
T 1xwi_A 124 NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF----EKRIYIPLPEPHARAAMFKL 190 (322)
T ss_dssp CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTC----CEEEECCCCCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhc----CeEEEeCCcCHHHHHHHHHH
Confidence 1 2333444433321 124577777777642 2333443 35899999999999999954
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.19 E-value=2.3e-10 Score=118.31 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=114.3
Q ss_pred hcCCChHHHHHHHHHHHcc----------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGT----------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~----------~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.|.+.++.+|...+.. ...+..+++|+||||||||++++++.+.++.++++++|.+....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~------- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK------- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS-------
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc-------
Confidence 4689999999999887742 11234569999999999999999999999999999999654321
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC--
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-- 205 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~-- 205 (537)
+ ..+....++.++... + ...+.||+|||+|.|.....
T Consensus 157 --------------~--------~g~~~~~~~~~~~~a----~---------------~~~~~vl~iDEid~l~~~~~~~ 195 (357)
T 3d8b_A 157 --------------W--------VGEGEKMVRALFAVA----R---------------CQQPAVIFIDEIDSLLSQRGDG 195 (357)
T ss_dssp --------------S--------TTHHHHHHHHHHHHH----H---------------HTCSEEEEEETHHHHTBC----
T ss_pred --------------c--------cchHHHHHHHHHHHH----H---------------hcCCeEEEEeCchhhhccCCCC
Confidence 0 001112233333221 1 12457899999999964210
Q ss_pred ----CCChHHHHHhhhhh-c--CCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhh
Q 009352 206 ----SSSILPFLFGLSDI-L--KMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKL 273 (537)
Q Consensus 206 ----~~~lL~~L~rl~e~-~--~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l 273 (537)
...++..|+...+- . ...++.||+.+|.+. +.+..|. ...++|+.++.++..+|+.... ....+
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf----~~~i~i~~p~~~~r~~il~~~~~~~~~~l 271 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRL----VKRLYIPLPEASARKQIVINLMSKEQCCL 271 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTC----CEEEECCCCCHHHHHHHHHHHHHTSCBCC
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhC----ceEEEeCCcCHHHHHHHHHHHHhhcCCCc
Confidence 01223333332221 1 113567777777632 2333333 2588999999999999984321 11123
Q ss_pred hhHHHHHHhhccccccCCHHHHHHHHHHhhhh
Q 009352 274 YSSFLDIVLRPFCRITKRVDELSTAFSLLFKR 305 (537)
Q Consensus 274 ~~~~~~~il~~~~~~~r~l~~L~~~~~~lw~~ 305 (537)
.+..++.+.....++. ...|..+|...|+.
T Consensus 272 ~~~~l~~la~~t~G~s--~~dl~~l~~~a~~~ 301 (357)
T 3d8b_A 272 SEEEIEQIVQQSDAFS--GADMTQLCREASLG 301 (357)
T ss_dssp CHHHHHHHHHHTTTCC--HHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHcCCCC--HHHHHHHHHHHHHH
Confidence 3444455444443322 34555556666654
No 34
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=1.4e-10 Score=116.92 Aligned_cols=186 Identities=12% Similarity=0.113 Sum_probs=110.7
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
+.++||+.++..|...+... ..++++||||+|+|||++++.+.+.+. ..++++||.+..+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~----------- 87 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID----------- 87 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHH-----------
T ss_pred HHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChH-----------
Confidence 46899999999999998652 345699999999999999999998862 346666665432211
Q ss_pred hccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 133 LHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 133 ~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
.++..+..+.... .....+++.+|||||+|.+.. .....
T Consensus 88 ------------------------~i~~~~~~~~~~~------------~~~~~~~~~viiiDe~~~l~~-----~~~~~ 126 (323)
T 1sxj_B 88 ------------------------VVRNQIKHFAQKK------------LHLPPGKHKIVILDEADSMTA-----GAQQA 126 (323)
T ss_dssp ------------------------HHHTHHHHHHHBC------------CCCCTTCCEEEEEESGGGSCH-----HHHHT
T ss_pred ------------------------HHHHHHHHHHhcc------------ccCCCCCceEEEEECcccCCH-----HHHHH
Confidence 1222222211000 001123467889999999853 23445
Q ss_pred HHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhccccccC
Q 009352 213 LFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 213 L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~~~r 290 (537)
|.++.+..+ +++.+|++++.. +.+.....++ ...+.|++++.+|+.++|..... ...+.+..++.++.... +
T Consensus 127 L~~~le~~~-~~~~~il~~~~~-~~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~---G 200 (323)
T 1sxj_B 127 LRRTMELYS-NSTRFAFACNQS-NKIIEPLQSQ-CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAE---G 200 (323)
T ss_dssp THHHHHHTT-TTEEEEEEESCG-GGSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHT---T
T ss_pred HHHHHhccC-CCceEEEEeCCh-hhchhHHHhh-ceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---C
Confidence 556555532 578889988763 3332211111 14899999999999999953211 11233444444444332 3
Q ss_pred CHHHHHHHHHHhh
Q 009352 291 RVDELSTAFSLLF 303 (537)
Q Consensus 291 ~l~~L~~~~~~lw 303 (537)
++..+...+..++
T Consensus 201 ~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 201 DMRQAINNLQSTV 213 (323)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555444444443
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.16 E-value=1.4e-10 Score=119.96 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=97.6
Q ss_pred hcCCChHHHHHHHHHHHcc----------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGT----------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~----------~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.|.+..++.|...+.. ...+..+++||||||||||+++++++++++.++++++|.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~-------- 122 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-------- 122 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS--------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh--------
Confidence 4689999999999887621 1123346999999999999999999999999999999853211
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--C
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--K 205 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--~ 205 (537)
.. .|. . ...++.++... + ...+.||+|||+|.|.... .
T Consensus 123 --~~--------~g~--------~---~~~~~~~f~~a----~---------------~~~~~vl~iDEid~l~~~r~~~ 162 (355)
T 2qp9_X 123 --KW--------MGE--------S---EKLVKQLFAMA----R---------------ENKPSIIFIDQVDALTGTRGEG 162 (355)
T ss_dssp --CC-------------------C---HHHHHHHHHHH----H---------------HTSSEEEEEECGGGGTC-----
T ss_pred --hh--------cch--------H---HHHHHHHHHHH----H---------------HcCCeEEEEechHhhcccCCCC
Confidence 00 010 0 11233333321 1 1246799999999996321 0
Q ss_pred C----CChHHHHHhhhhhcC--CCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 206 S----SSILPFLFGLSDILK--MPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 206 ~----~~lL~~L~rl~e~~~--~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
. ..+...|+...+... ..++.||+.+|.+. ..+..|. ...|+|++++.++..+||..
T Consensus 163 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf----~~~i~i~~P~~~~r~~il~~ 228 (355)
T 2qp9_X 163 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF----ERRIYIPLPDLAARTTMFEI 228 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTC----CEEEECCCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHccc----CEEEEeCCcCHHHHHHHHHH
Confidence 0 123444444433221 23566777777642 2334433 35889999999999999953
No 36
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.16 E-value=2.9e-10 Score=114.76 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=100.6
Q ss_pred hcCCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|-+..+++|..++... ..+...++||||||||||++++++..+++.++++++|.+
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~---------- 84 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE---------- 84 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHH----------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHH----------
Confidence 35788888888888776431 233456999999999999999999999999999999853
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
+...+.+... ..++.+++... ...+.+|+|||+|.|....
T Consensus 85 l~~~~~g~~~-------------------~~~~~~f~~a~-------------------~~~p~il~iDEid~l~~~~~~ 126 (301)
T 3cf0_A 85 LLTMWFGESE-------------------ANVREIFDKAR-------------------QAAPCVLFFDELDSIAKARGG 126 (301)
T ss_dssp HHHHHHTTCT-------------------THHHHHHHHHH-------------------HTCSEEEEECSTTHHHHHHTT
T ss_pred HHhhhcCchH-------------------HHHHHHHHHHH-------------------hcCCeEEEEEChHHHhhccCC
Confidence 2223322210 01333443221 1246799999999986321
Q ss_pred -------CCCChHHHHHhhhhhc-CCCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHH
Q 009352 205 -------KSSSILPFLFGLSDIL-KMPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 205 -------~~~~lL~~L~rl~e~~-~~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
....++..|++..+-. ...++.||+.+|.+ +.+.+ +.+ +....|+|++++.++..+|+.
T Consensus 127 ~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~-~~ld~al~r~g-Rf~~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 127 NIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP-DIIDPAILRPG-RLDQLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp TTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG-GGSCGGGGSTT-SSCEEEECCCCCHHHHHHHHH
T ss_pred CcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc-cccChHHhcCC-ccceEEecCCcCHHHHHHHHH
Confidence 1123455565544322 22467788888764 22221 222 223589999999999999985
No 37
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=2.2e-10 Score=115.77 Aligned_cols=185 Identities=14% Similarity=0.132 Sum_probs=111.2
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
+.+.|++..+..|..++... ..++++||||+|||||++++.+.+.+. ..+++++|.+......
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------- 92 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV---------- 92 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT----------
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH----------
Confidence 35899999999999998762 345699999999999999999998863 2356667643211000
Q ss_pred hccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 133 LHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 133 ~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
++..+..+.... ....++..+|||||+|.+.. +....
T Consensus 93 -------------------------~~~~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~-----~~~~~ 129 (327)
T 1iqp_A 93 -------------------------IREKVKEFARTK-------------PIGGASFKIIFLDEADALTQ-----DAQQA 129 (327)
T ss_dssp -------------------------THHHHHHHHHSC-------------CGGGCSCEEEEEETGGGSCH-----HHHHH
T ss_pred -------------------------HHHHHHHHHhhC-------------CcCCCCCeEEEEeCCCcCCH-----HHHHH
Confidence 111111111100 00113457889999999853 34556
Q ss_pred HHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHhhccccccC
Q 009352 213 LFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 213 L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il~~~~~~~r 290 (537)
|.++.+..+ +++.+|++++.. +.+.....++ ...+.|+|++.+|+.++|... .....+.+..++.++... .+
T Consensus 130 L~~~le~~~-~~~~~i~~~~~~-~~l~~~l~sr-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~---~g 203 (327)
T 1iqp_A 130 LRRTMEMFS-SNVRFILSCNYS-SKIIEPIQSR-CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA---EG 203 (327)
T ss_dssp HHHHHHHTT-TTEEEEEEESCG-GGSCHHHHHT-EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH---TT
T ss_pred HHHHHHhcC-CCCeEEEEeCCc-cccCHHHHhh-CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHC---CC
Confidence 666666543 568888888764 2332211111 147999999999999999532 112224444555555433 33
Q ss_pred CHHHHHHHHHHhh
Q 009352 291 RVDELSTAFSLLF 303 (537)
Q Consensus 291 ~l~~L~~~~~~lw 303 (537)
++..+...+..++
T Consensus 204 ~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 204 DMRRAINILQAAA 216 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 38
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.15 E-value=2.6e-10 Score=114.86 Aligned_cols=168 Identities=16% Similarity=0.241 Sum_probs=103.7
Q ss_pred HHhhcCCChHHHHHHHHHHHcccC----C---CCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHH
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLN----S---SMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~----~---~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~ 124 (537)
.+.+.++|.+..+..|...+.... . +..+++|+||||||||++++.+.+.+. .++++++|..+.....
T Consensus 14 ~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~-- 91 (311)
T 4fcw_A 14 ELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA-- 91 (311)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH--
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc--
Confidence 456788999999999988876531 1 123589999999999999999999874 4689999988765422
Q ss_pred HHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
...+.+..+. ..|+. .... +...+. .....+|+|||+|.+..
T Consensus 92 ---~~~l~g~~~~-~~~~~------~~~~----~~~~~~----------------------~~~~~vl~lDEi~~l~~-- 133 (311)
T 4fcw_A 92 ---VSRLIGAPPG-YVGYE------EGGQ----LTEAVR----------------------RRPYSVILFDAIEKAHP-- 133 (311)
T ss_dssp ---HHHHHCCCTT-STTTT------TCCH----HHHHHH----------------------HCSSEEEEEETGGGSCH--
T ss_pred ---HHHhcCCCCc-ccccc------ccch----HHHHHH----------------------hCCCeEEEEeChhhcCH--
Confidence 2233332211 11111 0011 111221 11235889999998853
Q ss_pred CCCChHHHHHhhhhhc----------CCCcEEEEEEeCCC-------------------------ccccccCCCCCCCce
Q 009352 205 KSSSILPFLFGLSDIL----------KMPEVGMIFISSTS-------------------------PDTYHSNTGYVAPIH 249 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~----------~~~~l~vI~Is~~~-------------------------~~~f~~r~~~~~p~~ 249 (537)
.+...|+++.+-. ...++.+|+.+|.. ...|.+..-.+.+..
T Consensus 134 ---~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~ 210 (311)
T 4fcw_A 134 ---DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEI 210 (311)
T ss_dssp ---HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEE
T ss_pred ---HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeE
Confidence 4555565554321 12356688888872 112211111233468
Q ss_pred eecCCCCHHHHHHHHH
Q 009352 250 VYFPECTEDDLRQIFM 265 (537)
Q Consensus 250 I~FppYt~~el~~IL~ 265 (537)
+.|+|++++++.+|+.
T Consensus 211 ~~~~p~~~~~~~~i~~ 226 (311)
T 4fcw_A 211 VVFRPLTKEQIRQIVE 226 (311)
T ss_dssp EECCCCCHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHH
Confidence 8999999999999995
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.15 E-value=2.4e-10 Score=118.30 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=50.6
Q ss_pred HhhcCCChHHHHHHHHHHHc-------------ccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 56 LLSRFPGRRVQILELLRLLG-------------TLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~-------------~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
+.+.+.|.+..++.|...+. ....+..+++|+||||||||++++++.+.++.+++.++|.+.
T Consensus 13 l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence 44567999999999988872 111134579999999999999999999999999999999753
No 40
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.15 E-value=1.4e-10 Score=116.86 Aligned_cols=184 Identities=11% Similarity=0.104 Sum_probs=111.4
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
+.+.|++..+..|...+.. ...++++||||+|||||++++.+.+.+. ..++++||......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT--TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT------------
T ss_pred HHHhCCHHHHHHHHHHHhC--CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh------------
Confidence 4588999999999988865 2345699999999999999999999862 34677777542110
Q ss_pred hccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHH
Q 009352 133 LHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (537)
Q Consensus 133 ~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~ 212 (537)
+.+.+ .+..+.... ....++..+|||||+|.+.. +....
T Consensus 83 ----------------~~~~~-------~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~-----~~~~~ 121 (319)
T 2chq_A 83 ----------------DVVRH-------KIKEFARTA-------------PIGGAPFKIIFLDEADALTA-----DAQAA 121 (319)
T ss_dssp ----------------TTSSH-------HHHHHHHSC-------------CSSSCCCEEEEEETGGGSCH-----HHHHT
T ss_pred ----------------HHHHH-------HHHHHHhcC-------------CCCCCCceEEEEeCCCcCCH-----HHHHH
Confidence 01111 111111100 01123467889999999853 23445
Q ss_pred HHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc--CCChhhhhHHHHHHhhccccccC
Q 009352 213 LFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN--QANQKLYSSFLDIVLRPFCRITK 290 (537)
Q Consensus 213 L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~--r~~~~l~~~~~~~il~~~~~~~r 290 (537)
|.++.|..+ +++.+|++++.. ..+.....++ ...+.|++++.+|+.++|... .....+.+..++.++... .+
T Consensus 122 L~~~le~~~-~~~~~i~~~~~~-~~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~---~G 195 (319)
T 2chq_A 122 LRRTMEMYS-KSCRFILSCNYV-SRIIEPIQSR-CAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS---GG 195 (319)
T ss_dssp TGGGTSSSS-SSEEEEEEESCG-GGSCHHHHTT-CEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTT---TT
T ss_pred HHHHHHhcC-CCCeEEEEeCCh-hhcchHHHhh-CeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CC
Confidence 556555432 568888888764 3332211111 148999999999999999532 112234445555555333 34
Q ss_pred CHHHHHHHHHHh
Q 009352 291 RVDELSTAFSLL 302 (537)
Q Consensus 291 ~l~~L~~~~~~l 302 (537)
++..+...+..+
T Consensus 196 ~~r~~~~~l~~~ 207 (319)
T 2chq_A 196 DFRKAINALQGA 207 (319)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666655555544
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.12 E-value=3e-10 Score=115.54 Aligned_cols=177 Identities=19% Similarity=0.243 Sum_probs=98.1
Q ss_pred HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCc
Q 009352 68 LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSS 144 (537)
Q Consensus 68 ~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~ 144 (537)
..+..++.......++++||||||||||++++.+.+.+ +.+++|++|.+. ...+...+...
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~---------- 87 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF------AQAMVEHLKKG---------- 87 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH------HHHHHHHHHHT----------
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH------HHHHHHHHHcC----------
Confidence 34444444322234689999999999999999999988 789999998542 33333333210
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC-CCCChHHHHHhhhhhcCCC
Q 009352 145 AKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-KSSSILPFLFGLSDILKMP 223 (537)
Q Consensus 145 ~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-~~~~lL~~L~rl~e~~~~~ 223 (537)
....| . ..+ ..+.+|+|||+|.+.... ....++..+-.+.+ .
T Consensus 88 -----~~~~~-------~----~~~-----------------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~----~ 130 (324)
T 1l8q_A 88 -----TINEF-------R----NMY-----------------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL----L 130 (324)
T ss_dssp -----CHHHH-------H----HHH-----------------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH----T
T ss_pred -----cHHHH-------H----HHh-----------------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH----C
Confidence 01111 1 111 024588999999986310 11122222222222 2
Q ss_pred cEEEEEEeCCCcc---ccccCCCCC--CCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhccccccCCHHHHH
Q 009352 224 EVGMIFISSTSPD---TYHSNTGYV--APIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCRITKRVDELS 296 (537)
Q Consensus 224 ~l~vI~Is~~~~~---~f~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~~~r~l~~L~ 296 (537)
+..+|+.++..+. .+..+..++ ....+.|+| +.+|..+||..... ...+.+..++.+.... +++.+|.
T Consensus 131 ~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~----g~~r~l~ 205 (324)
T 1l8q_A 131 EKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT----KNVREIE 205 (324)
T ss_dssp TCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----SSHHHHH
T ss_pred CCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC----CCHHHHH
Confidence 4567777776543 222211111 114789999 99999999954211 1123344444444333 6666666
Q ss_pred HHHHHh
Q 009352 297 TAFSLL 302 (537)
Q Consensus 297 ~~~~~l 302 (537)
.++..+
T Consensus 206 ~~l~~~ 211 (324)
T 1l8q_A 206 GKIKLI 211 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.11 E-value=6.8e-10 Score=118.19 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=96.6
Q ss_pred hcCCChHHHHHHHHHHHccc----------CCCCCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l-~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|.+.....|...+... ..+..+++||||||||||++++++.+++ +.++++++|.+..+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~------- 206 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS------- 206 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh-------
Confidence 45889999999998876311 1233569999999999999999999998 77888999865322
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC--
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-- 204 (537)
...+. +. . .++.++.... ...+.||+|||+|.|....
T Consensus 207 ---~~~g~--------~~----~-------~~~~~f~~a~-------------------~~~~~vl~iDEid~l~~~~~~ 245 (444)
T 2zan_A 207 ---KWLGE--------SE----K-------LVKNLFQLAR-------------------ENKPSIIFIDEIDSLCGSRSE 245 (444)
T ss_dssp ----------------CC----C-------THHHHHHHHH-------------------HSCSEEEEESCTTTTCCCSSC
T ss_pred ---hhcch--------HH----H-------HHHHHHHHHH-------------------HcCCeEEEEechHhhccCCCC
Confidence 11111 00 0 1233333211 1246789999999995321
Q ss_pred C----CCChHHHHHhhhhhcC--CCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 205 K----SSSILPFLFGLSDILK--MPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 205 ~----~~~lL~~L~rl~e~~~--~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
. ...++..|+...+-.. ..++.||+.+|.++ ..+.+|. ...|+|+.++.++..+|+..
T Consensus 246 ~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf----~~~i~i~~P~~~~r~~il~~ 312 (444)
T 2zan_A 246 NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF----EKRIYIPLPEAHARAAMFRL 312 (444)
T ss_dssp CCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTC----CEEEECCCCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhc----ceEEEeCCcCHHHHHHHHHH
Confidence 0 0123444544333221 23577777777642 2333333 35899999999999999853
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.09 E-value=6.9e-10 Score=118.15 Aligned_cols=179 Identities=12% Similarity=0.136 Sum_probs=106.5
Q ss_pred hcCCChHHHH---HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQI---LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi---~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.++|.+..+ ..|...+... ..++++||||||||||++++.+.+.++.+++.++|..+.. .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~-~------------- 89 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGV-K------------- 89 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCH-H-------------
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCH-H-------------
Confidence 4588999888 7788877652 2367999999999999999999999998899888754321 0
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
.++..++...... ..++..+|+|||+|.+... .+ ..|+
T Consensus 90 ----------------------~ir~~~~~a~~~~---------------~~~~~~iLfIDEI~~l~~~--~q---~~LL 127 (447)
T 3pvs_A 90 ----------------------EIREAIERARQNR---------------NAGRRTILFVDEVHRFNKS--QQ---DAFL 127 (447)
T ss_dssp ----------------------HHHHHHHHHHHHH---------------HTTCCEEEEEETTTCC-----------CCH
T ss_pred ----------------------HHHHHHHHHHHhh---------------hcCCCcEEEEeChhhhCHH--HH---HHHH
Confidence 1122222211100 0234578999999999641 12 2233
Q ss_pred hhhhhcCCCcEEEEEEeCCCc-cccccCCCCCCCceeecCCCCHHHHHHHHHhcC---------CChhhhhHHHHHHhhc
Q 009352 215 GLSDILKMPEVGMIFISSTSP-DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ---------ANQKLYSSFLDIVLRP 284 (537)
Q Consensus 215 rl~e~~~~~~l~vI~Is~~~~-~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r---------~~~~l~~~~~~~il~~ 284 (537)
+..|. ..+.+|+.++..+ ..+.....++ ...+.|++++.+++.+||.... ....+.+..++.++..
T Consensus 128 ~~le~---~~v~lI~att~n~~~~l~~aL~sR-~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~ 203 (447)
T 3pvs_A 128 PHIED---GTITFIGATTENPSFELNSALLSR-ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL 203 (447)
T ss_dssp HHHHT---TSCEEEEEESSCGGGSSCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH
T ss_pred HHHhc---CceEEEecCCCCcccccCHHHhCc-eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH
Confidence 43343 3577777776543 2222111111 1478899999999999996421 1123445555555555
Q ss_pred cccccCCHHHHHHHHHH
Q 009352 285 FCRITKRVDELSTAFSL 301 (537)
Q Consensus 285 ~~~~~r~l~~L~~~~~~ 301 (537)
..+ |+.++...+..
T Consensus 204 ~~G---d~R~lln~Le~ 217 (447)
T 3pvs_A 204 VNG---DARRALNTLEM 217 (447)
T ss_dssp HCS---CHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHH
Confidence 433 44444444433
No 44
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.07 E-value=2.1e-09 Score=111.70 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=50.0
Q ss_pred HhhcCCChHHHHHHHHHHHcc----------------------------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 56 LLSRFPGRRVQILELLRLLGT----------------------------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~----------------------------~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
+.+.+.|.+...+.|...+.. ...+..+++|+||||||||++++.+.+.++.
T Consensus 19 L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 19 LDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345678999888888877620 0113457999999999999999999999999
Q ss_pred CeEEEeccccC
Q 009352 108 PFVYTSCLSCY 118 (537)
Q Consensus 108 ~~~~inc~~~~ 118 (537)
+++.++|....
T Consensus 99 ~~~~~~~~~~~ 109 (376)
T 1um8_A 99 PIAISDATSLT 109 (376)
T ss_dssp CEEEEEGGGCC
T ss_pred CEEEecchhhh
Confidence 99999997643
No 45
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.05 E-value=1.3e-09 Score=110.29 Aligned_cols=159 Identities=18% Similarity=0.284 Sum_probs=99.6
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHK 135 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~~~ 135 (537)
.++|+...+.++...+........+++|+|+||||||++++++.+... .+++++||.... ..+++ ..+.++.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~--~~l~~---~~lfg~~ 77 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN--ESLLE---SELFGHE 77 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC--HHHHH---HHHTCCC
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC--hHHHH---HHhcCcc
Confidence 578899999999888876555567899999999999999999998763 589999998653 23333 3444543
Q ss_pred ccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHh
Q 009352 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (537)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~r 215 (537)
+....|... ... . .++. ..+ -+|+|||+|.+.. ++...|++
T Consensus 78 ~g~~tg~~~----~~~-g-------~~~~--------------------a~~--g~L~LDEi~~l~~-----~~q~~Ll~ 118 (304)
T 1ojl_A 78 KGAFTGADK----RRE-G-------RFVE--------------------ADG--GTLFLDEIGDISP-----LMQVRLLR 118 (304)
T ss_dssp SSCCC---C----CCC-C-------HHHH--------------------HTT--SEEEEESCTTCCH-----HHHHHHHH
T ss_pred ccccCchhh----hhc-C-------HHHh--------------------cCC--CEEEEeccccCCH-----HHHHHHHH
Confidence 322111110 000 1 2221 011 2688999999853 33444555
Q ss_pred hhhhcC----------CCcEEEEEEeCCCccc------c----ccCCCCCCCceeecCCCC--HHHHHHHH
Q 009352 216 LSDILK----------MPEVGMIFISSTSPDT------Y----HSNTGYVAPIHVYFPECT--EDDLRQIF 264 (537)
Q Consensus 216 l~e~~~----------~~~l~vI~Is~~~~~~------f----~~r~~~~~p~~I~FppYt--~~el~~IL 264 (537)
+.+-.. ..++.||+.+|..++. | +.|. ....|++||+. .+++..++
T Consensus 119 ~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl---~~~~i~lPpL~eR~edi~~l~ 186 (304)
T 1ojl_A 119 AIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRL---NVVAIEMPSLRQRREDIPLLA 186 (304)
T ss_dssp HHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHH---SSEEEECCCSGGGGGGHHHHH
T ss_pred HHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhc---CeeEEeccCHHHhHhhHHHHH
Confidence 433211 1358899999876422 2 2232 23689999998 57776666
No 46
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.04 E-value=1.9e-09 Score=105.73 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=95.0
Q ss_pred hcCCChHHHHHHHHHHHccc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.|.+...++|..++... .....+++|+||||||||++++++...++.++++++|.+....
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~------- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM------- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-------
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH-------
Confidence 45778888877776654321 0123459999999999999999999999999999998764321
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC-
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS- 206 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~- 206 (537)
..|.. ...++.+++.. . ...+.+++|||+|.+......
T Consensus 85 -----------~~~~~-----------~~~~~~~~~~a----~---------------~~~~~il~iDeid~l~~~~~~~ 123 (257)
T 1lv7_A 85 -----------FVGVG-----------ASRVRDMFEQA----K---------------KAAPCIIFIDEIDAVGRQRGAG 123 (257)
T ss_dssp -----------CCCCC-----------HHHHHHHHHHH----H---------------TTCSEEEEETTHHHHTCCCSTT
T ss_pred -----------hhhhh-----------HHHHHHHHHHH----H---------------HcCCeeehhhhhhhhccCCCCC
Confidence 01100 01233343321 1 234578999999988642110
Q ss_pred ----C----ChHHHHHhhhh-hcCCCcEEEEEEeCCCcccccc---CCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 207 ----S----SILPFLFGLSD-ILKMPEVGMIFISSTSPDTYHS---NTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 207 ----~----~lL~~L~rl~e-~~~~~~l~vI~Is~~~~~~f~~---r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
. ..+..++...+ .....++.||+.+|.+ +.+.. +.+ +....++|+.++.++..+|+..
T Consensus 124 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~-~~l~~~l~r~~-rf~~~i~i~~P~~~~r~~il~~ 193 (257)
T 1lv7_A 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP-DVLDPALLRPG-RFDRQVVVGLPDVRGREQILKV 193 (257)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT-TTSCGGGGSTT-SSCEEEECCCCCHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc-hhCCHHHcCCC-cCCeEEEeCCCCHHHHHHHHHH
Confidence 0 23333333222 2222356777777764 33322 222 2235889999999999998853
No 47
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.04 E-value=3.3e-10 Score=116.85 Aligned_cols=202 Identities=15% Similarity=0.160 Sum_probs=114.0
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~~vl~~l~~~--~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.++||+.++..|...+... ..+ .++|+||+|||||++++.+.+.+... .....|..|.+-. .+...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~--------~~~~~ 85 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR--------EIEQG 85 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT--CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH--------HHHTS
T ss_pred hhccCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH--------HHhcc
Confidence 35899999999999998652 223 47999999999999999999988632 2234566554321 11111
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
........... ......+ ++.+++.+ .. ....+++.||||||+|.+.. .....|+
T Consensus 86 ~~~~~~~~~~~-~~~~~~~----~~~l~~~~----~~-----------~~~~~~~~vliiDe~~~l~~-----~~~~~Ll 140 (373)
T 1jr3_A 86 RFVDLIEIDAA-SRTKVED----TRDLLDNV----QY-----------APARGRFKVYLIDEVHMLSR-----HSFNALL 140 (373)
T ss_dssp CCSSCEEEETT-CSCCSSC----HHHHHHHT----TS-----------CCSSSSSEEEEEECGGGSCH-----HHHHHHH
T ss_pred CCCceEEeccc-ccCCHHH----HHHHHHHH----hh-----------ccccCCeEEEEEECcchhcH-----HHHHHHH
Confidence 00000000000 0001111 22233321 10 01133567889999998853 3445666
Q ss_pred hhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhcccccc
Q 009352 215 GLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCRIT 289 (537)
Q Consensus 215 rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~~~ 289 (537)
++.+..+ .++.+|++++... ..+.++. ..+.|++++.+|+.++|..... ...+.+..++.++... .
T Consensus 141 ~~le~~~-~~~~~Il~~~~~~~l~~~l~sr~-----~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~---~ 211 (373)
T 1jr3_A 141 KTLEEPP-EHVKFLLATTDPQKLPVTILSRC-----LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA---E 211 (373)
T ss_dssp HHHHSCC-SSEEEEEEESCGGGSCHHHHTTS-----EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS---S
T ss_pred HHHhcCC-CceEEEEEeCChHhCcHHHHhhe-----eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC---C
Confidence 6655532 4688888887642 2223332 6899999999999999953211 1123334444444433 3
Q ss_pred CCHHHHHHHHHHhh
Q 009352 290 KRVDELSTAFSLLF 303 (537)
Q Consensus 290 r~l~~L~~~~~~lw 303 (537)
+++..+...+..++
T Consensus 212 G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 212 GSLRDALSLTDQAI 225 (373)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 35666666665554
No 48
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.03 E-value=1.6e-09 Score=122.09 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=100.6
Q ss_pred hcCCChHHHHHHHHHHHcc-----c------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGT-----L------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~-----~------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|-++++.+|.+.+.- . ..+...|++|||||||||+++++++.+++.++++|+|.+..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s------- 276 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS------- 276 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS-------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc-------
Confidence 3466777777777665432 1 112234999999999999999999999999999999854221
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC-C
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-K 205 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d-~ 205 (537)
.. .| +-...++.+++.. + ...+.||+|||+|.|.... .
T Consensus 277 ---k~--------~g-----------ese~~lr~lF~~A----~---------------~~~PsIIfIDEiDal~~~r~~ 315 (806)
T 3cf2_A 277 ---KL--------AG-----------ESESNLRKAFEEA----E---------------KNAPAIIFIDELDAIAPKREK 315 (806)
T ss_dssp ---SC--------TT-----------HHHHHHHHHHHHH----T---------------TSCSEEEEEESGGGTCCTTTT
T ss_pred ---cc--------ch-----------HHHHHHHHHHHHH----H---------------HcCCeEEEEehhcccccccCC
Confidence 00 01 1122344454431 1 3457899999999997421 1
Q ss_pred -C----CChHHHHHhhhhhcC-CCcEEEEEEeCCCc--cccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 206 -S----SSILPFLFGLSDILK-MPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 206 -~----~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~--~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
. ..++..|+.+.+-.. ..++.||..+|.+. +.-+.|.| +....|+|+.++.++-.+||...
T Consensus 316 ~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~G-RFd~~I~i~~Pd~~~R~~IL~~~ 384 (806)
T 3cf2_A 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG-RFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp CCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTT-SSCEEEECCCCCHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCc-ccceEEecCCCCHHHHHHHHHHH
Confidence 1 134555655544322 23467777777642 23333433 23468999999999999999643
No 49
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.03 E-value=4.5e-10 Score=103.40 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=45.7
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEec
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSC 114 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l----------~~~~~~inc 114 (537)
+.++||+.++..+...+.. ....+++|+||+|||||++++.+.+.+ +..+++++|
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred chhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 4689999999999998865 234579999999999999999999887 455666665
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=2.8e-09 Score=108.94 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=113.4
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC------CCeEEEeccccCCHHHHHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS------RPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~------~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
+.+.|+++.++.|...+... ..++++|+||||||||++++.+.+.+. ..++.+||.+......+ ...+..+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNF 113 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHH
Confidence 35788999999998888652 235699999999999999999998864 36778888764333222 2222222
Q ss_pred hhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHH
Q 009352 132 LLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (537)
Q Consensus 132 ~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~ 211 (537)
...... +.... .. .. .......+|+|||+|.+.. ....
T Consensus 114 ~~~~~~-----------~~~~~-------~~----~~---------------~~~~~~~vliiDE~~~l~~-----~~~~ 151 (353)
T 1sxj_D 114 ARLTVS-----------KPSKH-------DL----EN---------------YPCPPYKIIILDEADSMTA-----DAQS 151 (353)
T ss_dssp HHSCCC-----------CCCTT-------HH----HH---------------SCCCSCEEEEETTGGGSCH-----HHHH
T ss_pred hhhccc-----------ccchh-------hc----cc---------------CCCCCceEEEEECCCccCH-----HHHH
Confidence 111000 00000 00 00 1123446889999999853 2345
Q ss_pred HHHhhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcC--CChhhhhHHHHHHhhccc
Q 009352 212 FLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ--ANQKLYSSFLDIVLRPFC 286 (537)
Q Consensus 212 ~L~rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r--~~~~l~~~~~~~il~~~~ 286 (537)
.|+++.+... .+..+|++++.+. +.+.+|. ..+.|++++.+++.++|.... ....+.+..++.++....
T Consensus 152 ~Ll~~le~~~-~~~~~il~~~~~~~l~~~l~sR~-----~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 152 ALRRTMETYS-GVTRFCLICNYVTRIIDPLASQC-----SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 225 (353)
T ss_dssp HHHHHHHHTT-TTEEEEEEESCGGGSCHHHHHHS-----EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTS
T ss_pred HHHHHHHhcC-CCceEEEEeCchhhCcchhhccC-----ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 5666655432 4678888887642 2233332 489999999999999996421 112244455555554433
Q ss_pred cccCCHHHHHHHHHHhh
Q 009352 287 RITKRVDELSTAFSLLF 303 (537)
Q Consensus 287 ~~~r~l~~L~~~~~~lw 303 (537)
+++..+...+..++
T Consensus 226 ---G~~r~~~~~l~~~~ 239 (353)
T 1sxj_D 226 ---GDLRRGITLLQSAS 239 (353)
T ss_dssp ---SCHHHHHHHHHHTH
T ss_pred ---CCHHHHHHHHHHHH
Confidence 35555544444443
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.01 E-value=4.5e-09 Score=112.36 Aligned_cols=158 Identities=16% Similarity=0.107 Sum_probs=97.1
Q ss_pred hcCCChHHHHHHHHHHHccc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.|-++.+.+|..++... ......++|+||||||||++++++..+++.++++++|.+....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~------- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL------- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC-------
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH-------
Confidence 35778888777776654321 0112359999999999999999999999999999999765421
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC--
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-- 205 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~-- 205 (537)
+ .|. -...++.++.... ...+.||+|||+|.|.....
T Consensus 89 ---~--------~g~-----------~~~~~r~lf~~A~-------------------~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 89 ---F--------VGV-----------GAARVRDLFAQAK-------------------AHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp ---C--------TTH-----------HHHHHHHHHHHHH-------------------HTCSEEEEEETGGGTCCC----
T ss_pred ---H--------hcc-----------cHHHHHHHHHHHH-------------------hcCCCEEEEechhhhhhhcccc
Confidence 0 010 0112333443321 13468999999999864210
Q ss_pred ---C----CChHHHHHhhhhhcC-CCcEEEEEEeCCCcccc---ccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 206 ---S----SSILPFLFGLSDILK-MPEVGMIFISSTSPDTY---HSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 206 ---~----~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~~~f---~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
. ...+..|+...+-.. ..++.||..+|.+ +.+ +.+.+. ....|+|++++.++..+||.
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~-~~Ld~allR~gR-Fd~~i~i~~Pd~~~R~~Il~ 196 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP-DILDPALLRPGR-FDKKIVVDPPDMLGRKKILE 196 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG-GGSCGGGGSTTS-SCEEEECCCCCHHHHHHHHH
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh-hhhchhhcccCc-ceeEeecCCCCHHHHHHHHH
Confidence 0 123445554333211 1357777777764 322 223222 23489999999999988885
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.96 E-value=3.1e-09 Score=120.50 Aligned_cols=154 Identities=12% Similarity=0.184 Sum_probs=98.9
Q ss_pred HHhhcCCChHHHHHHHHHHHcccCC----C-CC--CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHH
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLNS----S-MP--PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~~----~-~~--~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~ 124 (537)
.+.+.++|.+..+..+...+..... + .| +++++||||||||++++++.+.+ +.+++++||.++.....
T Consensus 488 ~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~-- 565 (758)
T 3pxi_A 488 ILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS-- 565 (758)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC--
T ss_pred HHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc--
Confidence 4557799999999999888765321 1 12 59999999999999999999987 46899999977543110
Q ss_pred HHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
. + ... +.+.+. .....||+|||+|.+.
T Consensus 566 ----------------~-~-------~~~----l~~~~~----------------------~~~~~vl~lDEi~~~~--- 592 (758)
T 3pxi_A 566 ----------------T-S-------GGQ----LTEKVR----------------------RKPYSVVLLDAIEKAH--- 592 (758)
T ss_dssp ----------------C-C--------------CHHHHH----------------------HCSSSEEEEECGGGSC---
T ss_pred ----------------c-c-------cch----hhHHHH----------------------hCCCeEEEEeCccccC---
Confidence 0 0 000 111111 0122488999999874
Q ss_pred CCCChHHHHHhhhhhc----------CCCcEEEEEEeCCCccc-----------cccCCCCCCCceeecCCCCHHHHHHH
Q 009352 205 KSSSILPFLFGLSDIL----------KMPEVGMIFISSTSPDT-----------YHSNTGYVAPIHVYFPECTEDDLRQI 263 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~----------~~~~l~vI~Is~~~~~~-----------f~~r~~~~~p~~I~FppYt~~el~~I 263 (537)
.+++..|+++.+-- ...++.+|+.||..++. |.+..-++.+..|.|+|++.+++.+|
T Consensus 593 --~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i 670 (758)
T 3pxi_A 593 --PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEI 670 (758)
T ss_dssp --HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHH
T ss_pred --HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHH
Confidence 45666777665431 12467888888853321 22211122336899999999999999
Q ss_pred HH
Q 009352 264 FM 265 (537)
Q Consensus 264 L~ 265 (537)
+.
T Consensus 671 ~~ 672 (758)
T 3pxi_A 671 VS 672 (758)
T ss_dssp HH
T ss_pred HH
Confidence 95
No 53
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.95 E-value=1.1e-09 Score=110.11 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=75.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREAL 162 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l 162 (537)
.++||||||||||+++++++++++.++++++|.+..+. ..+ +-...+++.+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~----------~~g-------------------~~~~~i~~~f 88 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG----------NAG-------------------EPAKLIRQRY 88 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC--------------------------------HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhc----------cCc-------------------hhHHHHHHHH
Confidence 48999999999999999999999999999998543211 000 0011233344
Q ss_pred HHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC--CC------ChHHHHHhhhhh------------cCC
Q 009352 163 INVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK--SS------SILPFLFGLSDI------------LKM 222 (537)
Q Consensus 163 ~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~--~~------~lL~~L~rl~e~------------~~~ 222 (537)
......++ ...+.||+|||+|.+..... +. .+...|+.+.+- ...
T Consensus 89 ~~a~~~~~---------------~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~ 153 (293)
T 3t15_A 89 REAAEIIR---------------KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQEN 153 (293)
T ss_dssp HHHHHHHT---------------TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CC
T ss_pred HHHHHHHh---------------cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccC
Confidence 33221111 23567999999999875211 11 244666665431 012
Q ss_pred CcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 223 PEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 223 ~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.++.||+.+|.+. ..+.. .+ +....|++| +.++..+|+..
T Consensus 154 ~~v~vI~ttN~~~~ld~al~R-~~-R~d~~i~~P--~~~~r~~Il~~ 196 (293)
T 3t15_A 154 ARVPIIVTGNDFSTLYAPLIR-DG-RMEKFYWAP--TREDRIGVCTG 196 (293)
T ss_dssp CCCCEEEECSSCCC--CHHHH-HH-HEEEEEECC--CHHHHHHHHHH
T ss_pred CCcEEEEecCCcccCCHHHhC-CC-CCceeEeCc--CHHHHHHHHHH
Confidence 4577777777642 22221 11 111245544 99999999953
No 54
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.94 E-value=2.3e-09 Score=105.67 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=93.8
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLH 134 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~~ 134 (537)
+.+.|++..+..+...+........+++|+|+||||||++++.+.+.+. .+++++||.... . .+++ ..+.+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~-~-~~~~---~~l~g~ 80 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-E-NLLD---SELFGH 80 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC-H-HHHH---HHHHCC
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC-h-hHHH---HHhcCC
Confidence 4578899999888877765444457899999999999999999998875 579999998763 2 2222 233333
Q ss_pred cccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
......|... ... +.++. .. .-+|+|||+|.+.. +....|+
T Consensus 81 ~~~~~~g~~~-----~~~-------~~l~~--------------------a~--~~~l~lDEi~~l~~-----~~q~~Ll 121 (265)
T 2bjv_A 81 EAGAFTGAQK-----RHP-------GRFER--------------------AD--GGTLFLDELATAPM-----MVQEKLL 121 (265)
T ss_dssp C--------------CCC-------CHHHH--------------------TT--TSEEEEESGGGSCH-----HHHHHHH
T ss_pred cccccccccc-----ccc-------chhhh--------------------cC--CcEEEEechHhcCH-----HHHHHHH
Confidence 2111111000 000 02211 01 13788999999853 3344555
Q ss_pred hhhhhc----------CCCcEEEEEEeCCCccc----------cccCCCCCCCceeecCCCCH--HHHHHHH
Q 009352 215 GLSDIL----------KMPEVGMIFISSTSPDT----------YHSNTGYVAPIHVYFPECTE--DDLRQIF 264 (537)
Q Consensus 215 rl~e~~----------~~~~l~vI~Is~~~~~~----------f~~r~~~~~p~~I~FppYt~--~el~~IL 264 (537)
++.+.- ...++.+|+.+|..++. ++.|.. ...|.+||++. +++..++
T Consensus 122 ~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~---~~~i~lp~L~~R~~di~~l~ 190 (265)
T 2bjv_A 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALA---FDVVQLPPLRERESDIMLMA 190 (265)
T ss_dssp HHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHC---SEEEECCCGGGCHHHHHHHH
T ss_pred HHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhc---CcEEeCCChhhhhHHHHHHH
Confidence 544321 01357888888875432 222321 25789999986 6776665
No 55
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.93 E-value=1.3e-08 Score=108.76 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=49.6
Q ss_pred HhhcCCChHHHHHHHHHHHcc---cCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccCC
Q 009352 56 LLSRFPGRRVQILELLRLLGT---LNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCYS 119 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~---~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~--~~~~~inc~~~~s 119 (537)
..+.+.|.++....+..++.. ...+..++++|||||||||++++++.++++ .++++++|.+..+
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 446788888887766655433 222335699999999999999999999998 7899999886553
No 56
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=6.3e-09 Score=106.64 Aligned_cols=215 Identities=11% Similarity=0.113 Sum_probs=104.7
Q ss_pred hcCCChHHHHHHHHHHH-cccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC---CeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 58 SRFPGRRVQILELLRLL-GTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll-~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~---~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
+.++|++..+..|...+ .. ...++++|+||+|+|||++++.++..+.. ..+.++......+..- ...+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~--~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~----~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP--RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR----KLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT--TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc----cceeee
Confidence 45789999999888877 43 23455999999999999999999996521 1122221110000000 000000
Q ss_pred ccccc---cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChH
Q 009352 134 HKKNA---FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSIL 210 (537)
Q Consensus 134 ~~~~~---~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL 210 (537)
..... .++ . ...... . ..+++.++.+..... -...-..+. -..++-||||||++.|.. ...
T Consensus 88 ~~~~~~~~~~~-~-~~~~~~-~---~~~~~~i~~~~~~~~----~~~~~~ls~-l~~~~~vlilDE~~~L~~-----~~~ 151 (354)
T 1sxj_E 88 VSSPYHLEITP-S-DMGNND-R---IVIQELLKEVAQMEQ----VDFQDSKDG-LAHRYKCVIINEANSLTK-----DAQ 151 (354)
T ss_dssp EECSSEEEECC-C-----CC-H---HHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCH-----HHH
T ss_pred ecccceEEecH-h-hcCCcc-h---HHHHHHHHHHHHhcc----ccccccccc-cCCCCeEEEEeCccccCH-----HHH
Confidence 00000 000 0 000000 0 012223322211000 000000000 012456889999999632 334
Q ss_pred HHHHhhhhhcCCCcEEEEEEeCCCc---cccccCCCCCCCceeecCCCCHHHHHHHHHhcCC--Chhhh-hHHHHHHhhc
Q 009352 211 PFLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA--NQKLY-SSFLDIVLRP 284 (537)
Q Consensus 211 ~~L~rl~e~~~~~~l~vI~Is~~~~---~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~r~--~~~l~-~~~~~~il~~ 284 (537)
..|+++.+..+ .+..+|++++.+. +.+.+|. ..+.|++++.+++.++|..... ...+. +..++.++..
T Consensus 152 ~~L~~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~ 225 (354)
T 1sxj_E 152 AALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQC-----LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA 225 (354)
T ss_dssp HHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTS-----EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHH
T ss_pred HHHHHHHHhhc-CCCEEEEEeCCHHHHHHHHHhhc-----eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 55666555432 5788999998753 2333443 6899999999999999963211 11233 4555555544
Q ss_pred cccccCCHHHHHHHHHHhh
Q 009352 285 FCRITKRVDELSTAFSLLF 303 (537)
Q Consensus 285 ~~~~~r~l~~L~~~~~~lw 303 (537)
.. +++..+...+..++
T Consensus 226 ~~---G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 226 SN---GNLRVSLLMLESMA 241 (354)
T ss_dssp HT---TCHHHHHHHHTHHH
T ss_pred cC---CCHHHHHHHHHHHH
Confidence 43 35555555554443
No 57
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.91 E-value=3e-09 Score=113.09 Aligned_cols=194 Identities=15% Similarity=0.233 Sum_probs=104.5
Q ss_pred hhHHhhcCC-ChHHHH--HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHH
Q 009352 53 LDDLLSRFP-GRRVQI--LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 53 ~~~l~~~~~-~Re~qi--~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc~~~~s~~~l~ 124 (537)
..+..+.|+ |...++ ..+..+...... .++++||||+|||||++++.+.+.+ +.+++|++|.+. .
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~------~ 172 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF------L 172 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH------H
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH------H
Confidence 333445555 433332 333444333211 4679999999999999999999887 678899998652 2
Q ss_pred HHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC
Q 009352 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (537)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d 204 (537)
..+...+... ....| . ..+ ...+.+|+|||+|.+...+
T Consensus 173 ~~~~~~~~~~---------------~~~~~-------~----~~~----------------~~~~~vL~IDEi~~l~~~~ 210 (440)
T 2z4s_A 173 NDLVDSMKEG---------------KLNEF-------R----EKY----------------RKKVDILLIDDVQFLIGKT 210 (440)
T ss_dssp HHHHHHHHTT---------------CHHHH-------H----HHH----------------TTTCSEEEEECGGGGSSCH
T ss_pred HHHHHHHHcc---------------cHHHH-------H----HHh----------------cCCCCEEEEeCcccccCCh
Confidence 3333333211 01111 1 110 1134588999999986411
Q ss_pred -CCCChHHHHHhhhhhcCCCcEEEEEEeCCCccc---cccCCCCC--CCceeecCCCCHHHHHHHHHhcCC--ChhhhhH
Q 009352 205 -KSSSILPFLFGLSDILKMPEVGMIFISSTSPDT---YHSNTGYV--APIHVYFPECTEDDLRQIFMRNQA--NQKLYSS 276 (537)
Q Consensus 205 -~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~---f~~r~~~~--~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~ 276 (537)
....++..|-.+.+ .+..+|+.++.++.. +..+..++ ....+.|++++.++..+||..... ...+-+.
T Consensus 211 ~~q~~l~~~l~~l~~----~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e 286 (440)
T 2z4s_A 211 GVQTELFHTFNELHD----SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE 286 (440)
T ss_dssp HHHHHHHHHHHHHHT----TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHHHHH----CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 11123322222222 346677777765433 22211111 114789999999999999964211 1112333
Q ss_pred HHHHHhhccccccCCHHHHHHHHHHh
Q 009352 277 FLDIVLRPFCRITKRVDELSTAFSLL 302 (537)
Q Consensus 277 ~~~~il~~~~~~~r~l~~L~~~~~~l 302 (537)
.++.+.... .+++.++..++..+
T Consensus 287 ~l~~la~~~---~gn~R~l~~~L~~~ 309 (440)
T 2z4s_A 287 VLNFVAENV---DDNLRRLRGAIIKL 309 (440)
T ss_dssp HHHHHHHHC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHH
Confidence 344443322 34676666666555
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.90 E-value=5.7e-09 Score=118.35 Aligned_cols=167 Identities=14% Similarity=0.208 Sum_probs=102.9
Q ss_pred HhhcCCChHHHHHHHHHHHcccCC-------CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009352 56 LLSRFPGRRVQILELLRLLGTLNS-------SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~~~-------~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il 128 (537)
+.+.++|.+..+..|...+..... +..+++++||||||||++++.+.+.++.+++++||.++..... +
T Consensus 456 l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~-----~ 530 (758)
T 1r6b_X 456 LKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT-----V 530 (758)
T ss_dssp HTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC-----C
T ss_pred HHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh-----H
Confidence 446789999999988887754221 2236999999999999999999999998999999987654210 0
Q ss_pred HHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCC
Q 009352 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSS 208 (537)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~ 208 (537)
..+.+.. .|+. .+- -...+...+. .....||+|||+|++. .+
T Consensus 531 ~~l~g~~----~g~~---------g~~--~~~~l~~~~~------------------~~~~~vl~lDEi~~~~-----~~ 572 (758)
T 1r6b_X 531 SRLIGAP----PGYV---------GFD--QGGLLTDAVI------------------KHPHAVLLLDEIEKAH-----PD 572 (758)
T ss_dssp SSSCCCC----SCSH---------HHH--HTTHHHHHHH------------------HCSSEEEEEETGGGSC-----HH
T ss_pred hhhcCCC----CCCc---------Ccc--ccchHHHHHH------------------hCCCcEEEEeCccccC-----HH
Confidence 0111110 0110 000 0001111111 1134688999999874 45
Q ss_pred hHHHHHhhhhhcC----------CCcEEEEEEeCCCcc------------------------ccccCCCCCCCceeecCC
Q 009352 209 ILPFLFGLSDILK----------MPEVGMIFISSTSPD------------------------TYHSNTGYVAPIHVYFPE 254 (537)
Q Consensus 209 lL~~L~rl~e~~~----------~~~l~vI~Is~~~~~------------------------~f~~r~~~~~p~~I~Fpp 254 (537)
++..|+++.|--. ..++.+|+.+|...+ .|.+..-.+....|.|+|
T Consensus 573 ~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 652 (758)
T 1r6b_X 573 VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDH 652 (758)
T ss_dssp HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCC
T ss_pred HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCC
Confidence 7777777655311 235678888876321 121111122335799999
Q ss_pred CCHHHHHHHHH
Q 009352 255 CTEDDLRQIFM 265 (537)
Q Consensus 255 Yt~~el~~IL~ 265 (537)
++.+++.+|+.
T Consensus 653 l~~~~~~~i~~ 663 (758)
T 1r6b_X 653 LSTDVIHQVVD 663 (758)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999995
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.90 E-value=7.9e-10 Score=109.06 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=33.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~ 118 (537)
..+++||||||||||++++++.+.++.++++++|....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 34699999999999999999999999999999987543
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.89 E-value=4.4e-09 Score=120.80 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=89.7
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l----------~~~~~~inc~~~~s~~~l~~~I 127 (537)
+.++||++++..+...+.. ...++++|+||||||||++++.+++.+ +.++++++|.....
T Consensus 170 d~viGr~~~i~~l~~~l~~--~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC--SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred cccCCcHHHHHHHHHHHhc--CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 4589999999999998865 234579999999999999999999987 56788888743211
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC---
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d--- 204 (537)
+. . ...+|...++.++..+.. .+.+.||+|||+|.|....
T Consensus 240 -----g~--------~------~~g~~~~~l~~~~~~~~~------------------~~~~~iL~IDEi~~l~~~~~~~ 282 (854)
T 1qvr_A 240 -----GA--------K------YRGEFEERLKAVIQEVVQ------------------SQGEVILFIDELHTVVGAGKAE 282 (854)
T ss_dssp -------------------------CHHHHHHHHHHHHHT------------------TCSSEEEEECCC----------
T ss_pred -----cC--------c------cchHHHHHHHHHHHHHHh------------------cCCCeEEEEecHHHHhccCCcc
Confidence 00 0 011334445555543211 2346899999999996311
Q ss_pred CCCChHHHHHhhhhhcCCCcEEEEEEeCCCcc-cc--ccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSPD-TY--HSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 205 ~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~-~f--~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
+..++...|..+.+- .++.+|+.++..+. .+ ......+. ..|.|++++.++..+||.
T Consensus 283 g~~~~~~~L~~~l~~---~~i~~I~at~~~~~~~~~~d~aL~rRf-~~i~l~~p~~~e~~~iL~ 342 (854)
T 1qvr_A 283 GAVDAGNMLKPALAR---GELRLIGATTLDEYREIEKDPALERRF-QPVYVDEPTVEETISILR 342 (854)
T ss_dssp ---------HHHHHT---TCCCEEEEECHHHHHHHTTCTTTCSCC-CCEEECCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHhC---CCeEEEEecCchHHhhhccCHHHHhCC-ceEEeCCCCHHHHHHHHH
Confidence 112222233333232 34667777764321 01 12221221 359999999999999994
No 61
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.88 E-value=4.9e-10 Score=100.33 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=46.5
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~ 116 (537)
.+.|++.++.++...+........+++|+|+||||||++++++.+... +++++||..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~ 61 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVE 61 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhh
Confidence 467889999998888876545567899999999999999999998887 899999864
No 62
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=3.1e-08 Score=101.33 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=92.7
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-----CeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-----PFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~-----~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.++|.+..+..|...+... ..+++++|||+|||||++++.+++.+.. .+..+|+.....
T Consensus 26 ~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~-------------- 89 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG-------------- 89 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS--------------
T ss_pred HhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc--------------
Confidence 3678888899998888762 3456999999999999999999998642 133333322111
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
+..+++.+..+.+.. ....+..-|+||||+|.+.. +...+|
T Consensus 90 ---------------------~~~ir~~i~~~~~~~-------------~~~~~~~~viiiDe~~~l~~-----~~~~~L 130 (340)
T 1sxj_C 90 ---------------------IDVVRNQIKDFASTR-------------QIFSKGFKLIILDEADAMTN-----AAQNAL 130 (340)
T ss_dssp ---------------------HHHHHTHHHHHHHBC-------------CSSSCSCEEEEETTGGGSCH-----HHHHHH
T ss_pred ---------------------HHHHHHHHHHHHhhc-------------ccCCCCceEEEEeCCCCCCH-----HHHHHH
Confidence 111222222221100 00012356888999999853 234567
Q ss_pred HhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.++.|..+ .+..+|++++.. ..+.+...++ ...+.|++++.+++.++|.
T Consensus 131 ~~~le~~~-~~~~~il~~n~~-~~i~~~i~sR-~~~~~~~~l~~~~~~~~l~ 179 (340)
T 1sxj_C 131 RRVIERYT-KNTRFCVLANYA-HKLTPALLSQ-CTRFRFQPLPQEAIERRIA 179 (340)
T ss_dssp HHHHHHTT-TTEEEEEEESCG-GGSCHHHHTT-SEEEECCCCCHHHHHHHHH
T ss_pred HHHHhcCC-CCeEEEEEecCc-cccchhHHhh-ceeEeccCCCHHHHHHHHH
Confidence 77766643 568888888763 3333222121 1489999999999999985
No 63
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.85 E-value=4.3e-09 Score=94.33 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=48.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~ 118 (537)
.++|+..++.++...+........+++|+|+||||||++++++.+.. +.+++ +||....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 57899999999998887655556789999999999999999999876 45788 9997543
No 64
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.84 E-value=3.3e-08 Score=101.14 Aligned_cols=170 Identities=14% Similarity=0.078 Sum_probs=99.1
Q ss_pred CCChHHHHHHHHHHHcccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHHHHHHHHHHhhccc
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GtGKTsiv~~vl~~l~~~~~--~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
+|..++.++.|...+... ..++ +++|||+|+|||++++.+++.+..... ...|..|.+-+.+. .+..+
T Consensus 4 ~pw~~~~~~~l~~~i~~~--~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~-------~~~~~ 74 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAG--RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQ-------AGTHP 74 (334)
T ss_dssp CGGGHHHHHHHHHHHHTT--CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHH-------HTCCT
T ss_pred CCchHHHHHHHHHHHHcC--CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh-------cCCCC
Confidence 456677788888887652 3344 899999999999999999998763221 12466665422211 11111
Q ss_pred cc--cCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHH
Q 009352 137 NA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (537)
Q Consensus 137 ~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~ 214 (537)
+- .++.. ...... ++.++++++.+ .. ....++..|+||||+|.+.. +-..+|+
T Consensus 75 d~~~~~~~~-~~~~~~----i~~ir~l~~~~----~~-----------~~~~~~~kvviIdead~l~~-----~a~naLL 129 (334)
T 1a5t_A 75 DYYTLAPEK-GKNTLG----VDAVREVTEKL----NE-----------HARLGGAKVVWVTDAALLTD-----AAANALL 129 (334)
T ss_dssp TEEEECCCT-TCSSBC----HHHHHHHHHHT----TS-----------CCTTSSCEEEEESCGGGBCH-----HHHHHHH
T ss_pred CEEEEeccc-cCCCCC----HHHHHHHHHHH----hh-----------ccccCCcEEEEECchhhcCH-----HHHHHHH
Confidence 10 00000 000011 22244444321 10 01123456888999999963 2345666
Q ss_pred hhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 215 GLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 215 rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
+..|-.+ +++.+|++++.+ +++++.+.++ ...+.|++++.+|+.++|..
T Consensus 130 k~lEep~-~~~~~Il~t~~~-~~l~~ti~SR-c~~~~~~~~~~~~~~~~L~~ 178 (334)
T 1a5t_A 130 KTLEEPP-AETWFFLATREP-ERLLATLRSR-CRLHYLAPPPEQYAVTWLSR 178 (334)
T ss_dssp HHHTSCC-TTEEEEEEESCG-GGSCHHHHTT-SEEEECCCCCHHHHHHHHHH
T ss_pred HHhcCCC-CCeEEEEEeCCh-HhCcHHHhhc-ceeeeCCCCCHHHHHHHHHH
Confidence 7666532 578899998873 4443322222 25899999999999999964
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.82 E-value=2.6e-09 Score=102.56 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhccccccC
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFN 140 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~ 140 (537)
+..+..|..++... ..++++|+||+|||||++++.+.+.+. .++.+++|.+....
T Consensus 37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 94 (242)
T 3bos_A 37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-------------------- 94 (242)
T ss_dssp HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS--------------------
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------------------
Confidence 46667777776542 356799999999999999999998765 57888888542210
Q ss_pred CCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhh-
Q 009352 141 GYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDI- 219 (537)
Q Consensus 141 g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~- 219 (537)
. .+ .+. . ...+.+|||||+|.+.. . ......|+.+.+.
T Consensus 95 -~---------~~-------~~~----~-----------------~~~~~vliiDe~~~~~~--~-~~~~~~l~~~l~~~ 133 (242)
T 3bos_A 95 -S---------TA-------LLE----G-----------------LEQFDLICIDDVDAVAG--H-PLWEEAIFDLYNRV 133 (242)
T ss_dssp -C---------GG-------GGT----T-----------------GGGSSEEEEETGGGGTT--C-HHHHHHHHHHHHHH
T ss_pred -H---------HH-------HHH----h-----------------ccCCCEEEEeccccccC--C-HHHHHHHHHHHHHH
Confidence 0 00 000 0 01245889999999853 1 1112223332221
Q ss_pred cCCCcEEEEEEeCCCccccc---cCCCCC--CCceeecCCCCHHHHHHHHHhcCC--ChhhhhHHHHHHhhccccccCCH
Q 009352 220 LKMPEVGMIFISSTSPDTYH---SNTGYV--APIHVYFPECTEDDLRQIFMRNQA--NQKLYSSFLDIVLRPFCRITKRV 292 (537)
Q Consensus 220 ~~~~~l~vI~Is~~~~~~f~---~r~~~~--~p~~I~FppYt~~el~~IL~~~r~--~~~l~~~~~~~il~~~~~~~r~l 292 (537)
.......+|++++..++.+. ....++ ....+.|++++.+|+.+|+..... ...+.+..++.++... .+++
T Consensus 134 ~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~---~g~~ 210 (242)
T 3bos_A 134 AEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRM---ARDL 210 (242)
T ss_dssp HHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHT---TTCH
T ss_pred HHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---cCCH
Confidence 11112357888876543221 111111 115899999999999999953211 1123344444444332 3466
Q ss_pred HHHHHHHHHh
Q 009352 293 DELSTAFSLL 302 (537)
Q Consensus 293 ~~L~~~~~~l 302 (537)
.++...+..+
T Consensus 211 r~l~~~l~~~ 220 (242)
T 3bos_A 211 RTLFDVLDRL 220 (242)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666555
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.80 E-value=1e-08 Score=117.69 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=52.4
Q ss_pred HHhhcCCChHHHHHHHHHHHcccC----C---CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLN----S---SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~----~---~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s 119 (537)
.+.+.++|.+..+..|...+.... . +..+++|+||+|||||++++.+.+.+ +.+++++||.++..
T Consensus 555 ~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 555 ELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred HHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 345678999999999988875532 1 12368999999999999999999988 56899999988764
No 67
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.80 E-value=4.3e-08 Score=105.37 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=44.9
Q ss_pred hcCCChHHHHHHHHHHHcc---c--C-----CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 58 SRFPGRRVQILELLRLLGT---L--N-----SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~---~--~-----~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
+.+.|.++...+|..++.. . . .....++|+||||||||++++++...++.++++++|.+.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~ 100 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 100 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH
Confidence 3577777777666655432 1 0 112349999999999999999999999999999998653
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.80 E-value=3.3e-08 Score=96.66 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=40.6
Q ss_pred cCCChHHHHHHHHHHHccc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 59 RFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
.+.|.++...++..+.... ......++|+||+|||||++++.+...++..+++++|.
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 4566666655554443211 11123499999999999999999999998888888874
No 69
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.78 E-value=4.8e-09 Score=106.82 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=52.6
Q ss_pred HhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHH
Q 009352 56 LLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPR 121 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~ 121 (537)
+.+.++|++..+..+...+.. +.+++++||||||||++++.+.+.++.++.+++|....++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~----~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT----GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH----TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHH
T ss_pred hccceeCcHHHHHHHHHHHHc----CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChh
Confidence 446789999999998887765 46899999999999999999999999999999986555443
No 70
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.76 E-value=1e-08 Score=115.57 Aligned_cols=190 Identities=16% Similarity=0.154 Sum_probs=95.4
Q ss_pred CCChHHHHHHHHHHHccc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009352 60 FPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il 128 (537)
+.|-++..++|...+.-. ..+...+++|||||||||.++++++.+++.+++.+++.+..
T Consensus 479 iggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~---------- 548 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL---------- 548 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH----------
T ss_pred hCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh----------
Confidence 455556666665544321 11223599999999999999999999999988888754321
Q ss_pred HHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC----
Q 009352 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---- 204 (537)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d---- 204 (537)
+.. -|.+ ...++++|+. .+ ...++||+|||+|.|....
T Consensus 549 s~~--------vGes-----------e~~vr~lF~~----Ar---------------~~~P~IifiDEiDsl~~~R~~~~ 590 (806)
T 3cf2_A 549 TMW--------FGES-----------EANVREIFDK----AR---------------QAAPCVLFFDELDSIAKARGGNI 590 (806)
T ss_dssp TTT--------CSSC-----------HHHHHHHHHH----HH---------------TTCSEEEECSCGGGCC-------
T ss_pred ccc--------cchH-----------HHHHHHHHHH----HH---------------HcCCceeechhhhHHhhccCCCC
Confidence 111 1111 1124445543 21 2357899999999996321
Q ss_pred -----CCCChHHHHHhhhhhcC-CCcEEEEEEeCCCcccc---ccCCCCCCCceeecCCCCHHHHHHHHHhcCCChhhhh
Q 009352 205 -----KSSSILPFLFGLSDILK-MPEVGMIFISSTSPDTY---HSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYS 275 (537)
Q Consensus 205 -----~~~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~~~f---~~r~~~~~p~~I~FppYt~~el~~IL~~~r~~~~l~~ 275 (537)
....++..|+...+-.. ..++-||..+|.+ +.+ +.|.|. ....|+||.++.++-.+||...-....+..
T Consensus 591 ~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p-~~lD~AllRpgR-fd~~i~v~lPd~~~R~~il~~~l~~~~~~~ 668 (806)
T 3cf2_A 591 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP-DIIDPAILRPGR-LDQLIYIPLPDEKSRVAILKANLRKSPVAK 668 (806)
T ss_dssp -------CHHHHHHHHHHHSSCSSSSEEEECC-CCS-SSSCHHHHSTTT-SCCEEEC-----CHHHHTTTTTSSCC--CC
T ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCc-hhCCHhHcCCCc-ceEEEEECCcCHHHHHHHHHHHhcCCCCCC
Confidence 11235666665444322 2345555556654 333 234443 235899999999999999954322211211
Q ss_pred HH-HHHHhhccccccC-CHHHHHHHH
Q 009352 276 SF-LDIVLRPFCRITK-RVDELSTAF 299 (537)
Q Consensus 276 ~~-~~~il~~~~~~~r-~l~~L~~~~ 299 (537)
++ ++.+.....+++. |+..+...+
T Consensus 669 ~~dl~~la~~t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 669 DVDLEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp C----------------CHHHHHHHH
T ss_pred CCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 11 2333333334443 666655544
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.73 E-value=4.9e-08 Score=96.97 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=43.1
Q ss_pred hcCCChHHHHHHHHHHHccc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 58 SRFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
+.+.|.++...++..+.... ......++|+||+|||||++++.+...++..+++++|.
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHH
Confidence 45777777776666554321 01123499999999999999999999998888988874
No 72
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.73 E-value=3.2e-08 Score=105.93 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=44.7
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEecc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCL 115 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l----------~~~~~~inc~ 115 (537)
+.++||+.++..+...+.. ...++++|+||||||||++++.+...+ +.+++.++|.
T Consensus 180 d~iiGr~~~i~~l~~~l~r--~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred CCccCcHHHHHHHHHHHhc--cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 3589999999999999865 234579999999999999999999986 4567777775
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.70 E-value=5.1e-08 Score=106.26 Aligned_cols=163 Identities=16% Similarity=0.146 Sum_probs=87.9
Q ss_pred hhcCCChHHHHHHHHHHHc-----ccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLG-----TLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~-----~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
.+.+.|=++....+...+. ... ++++++|+||||||||++++.+...++.++..|+|........++
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~------- 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR------- 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh-------
Confidence 3457777776666644332 111 455799999999999999999999999999999987644322221
Q ss_pred hhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHH
Q 009352 132 LLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (537)
Q Consensus 132 ~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~ 211 (537)
++... .-|.. .. .+...+.. .....+ +|+|||+|.+.... ..+...
T Consensus 152 -g~~~~-~ig~~-------~~----~~~~~~~~-------------------a~~~~~-vl~lDEid~l~~~~-~~~~~~ 197 (543)
T 3m6a_A 152 -GHRRT-YVGAM-------PG----RIIQGMKK-------------------AGKLNP-VFLLDEIDKMSSDF-RGDPSS 197 (543)
T ss_dssp -------------------------CHHHHHHT-------------------TCSSSE-EEEEEESSSCC----------
T ss_pred -hHHHH-HhccC-------ch----HHHHHHHH-------------------hhccCC-EEEEhhhhhhhhhh-ccCHHH
Confidence 11000 00100 00 01112211 012234 88899999996421 112233
Q ss_pred HHHhhhhhc--------------CCCcEEEEEEeCCC---ccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 212 FLFGLSDIL--------------KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 212 ~L~rl~e~~--------------~~~~l~vI~Is~~~---~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
.|+++.+-. +..++.+|+.+|.. +..++.|. ..|+|++|+.+|..+|+..
T Consensus 198 ~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~-----~vi~~~~~~~~e~~~Il~~ 264 (543)
T 3m6a_A 198 AMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRM-----EIINIAGYTEIEKLEIVKD 264 (543)
T ss_dssp CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHE-----EEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhc-----ceeeeCCCCHHHHHHHHHH
Confidence 333332210 01345666666653 23445544 3789999999999999964
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.70 E-value=1.1e-07 Score=107.73 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=92.2
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEeccccCCHHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~----------~~~~~inc~~~~s~~~l~~~I 127 (537)
+.+.||+.++..+...+... ...+++|+||||||||++++.+.+.+. ..+..+++....
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~--------- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL--------- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh---------
Confidence 45899999999999998753 446799999999999999999998762 122223322110
Q ss_pred HHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCC
Q 009352 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS 207 (537)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~ 207 (537)
. |. ....+|...++.+++.+ . ...+.+|+|||+|.|.......
T Consensus 255 ----~--------~~------~~~g~~e~~l~~~~~~~----~---------------~~~~~iL~IDEi~~l~~~~~~~ 297 (758)
T 1r6b_X 255 ----A--------GT------KYRGDFEKRFKALLKQL----E---------------QDTNSILFIDEIHTIIGAGAAS 297 (758)
T ss_dssp ----C--------CC------CCSSCHHHHHHHHHHHH----S---------------SSSCEEEEETTTTTTTTSCCSS
T ss_pred ----c--------cc------cccchHHHHHHHHHHHH----H---------------hcCCeEEEEechHHHhhcCCCC
Confidence 0 00 01123444455555432 1 1245789999999995321111
Q ss_pred -ChHHHHHhhhhhcCCCcEEEEEEeCCCc--ccc--ccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 208 -SILPFLFGLSDILKMPEVGMIFISSTSP--DTY--HSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 208 -~lL~~L~rl~e~~~~~~l~vI~Is~~~~--~~f--~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
.-....-.|..++...++.+|+.++... ..+ .+....+ ...|.|++++.+|..+||.
T Consensus 298 ~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~R-f~~i~v~~p~~~e~~~il~ 359 (758)
T 1r6b_X 298 GGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARR-FQKIDITEPSIEETVQIIN 359 (758)
T ss_dssp SCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGG-EEEEECCCCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhC-ceEEEcCCCCHHHHHHHHH
Confidence 1112211222332234577777776421 111 1111111 1379999999999999995
No 75
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.68 E-value=1.1e-07 Score=108.35 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=100.8
Q ss_pred hcCCChHHHHHHHHHHHcc-----------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGT-----------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~-----------~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~ 126 (537)
+.+.|.+.++++|...+.. ...++.+++|+||||||||++++.+...++..++++||.+..+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~------- 276 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS------- 276 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS-------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh-------
Confidence 5688999999888887753 1234456999999999999999999999998999999844221
Q ss_pred HHHHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC-
Q 009352 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK- 205 (537)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~- 205 (537)
. ...++...++.+++.... ..+.++++||+|.+.....
T Consensus 277 -------~---------------~~g~~~~~l~~vf~~a~~-------------------~~p~il~iDEid~l~~~~~~ 315 (806)
T 1ypw_A 277 -------K---------------LAGESESNLRKAFEEAEK-------------------NAPAIIFIDELDAIAPKREK 315 (806)
T ss_dssp -------S---------------STTHHHHHHHHHHHHHHH-------------------HCSEEEEEESGGGTSCTTSC
T ss_pred -------h---------------hhhhHHHHHHHHHHHHHh-------------------cCCcEEEeccHHHhhhcccc
Confidence 0 001222234444443211 2457899999999874211
Q ss_pred C-----CChHHHHHhhhhhcC-CCcEEEEEEeCCCccccc---cCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 206 S-----SSILPFLFGLSDILK-MPEVGMIFISSTSPDTYH---SNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 206 ~-----~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~~~f~---~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
. ..++..|+.+.+-.. ..++.+|+.++.+ +.+. .+.+ +....+.|+.++.++..+||..
T Consensus 316 ~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~-~~ld~al~r~g-Rf~~~i~i~~p~~~~r~~il~~ 383 (806)
T 1ypw_A 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP-NSIDPALRRFG-RFDREVDIGIPDATGRLEILQI 383 (806)
T ss_dssp CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT-TTSCTTTTSTT-SSCEEECCCCCCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhhcccccEEEecccCCc-hhcCHHHhccc-ccccccccCCCCHHHHHHHHHH
Confidence 0 124455555544221 2346666666653 3332 2222 2235789999999999999964
No 76
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=6.4e-08 Score=97.79 Aligned_cols=142 Identities=6% Similarity=-0.043 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC------CCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS------RPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~------~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~ 137 (537)
++.+..|...+.... .+.+++|||+|+|||++++.+.+..+ ..+.+++....
T Consensus 3 ~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-------------------- 60 (305)
T 2gno_A 3 KDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-------------------- 60 (305)
T ss_dssp -CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS--------------------
T ss_pred HHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC--------------------
Confidence 456677888886632 45688999999999999999998521 13333332100
Q ss_pred ccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhh
Q 009352 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLS 217 (537)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~ 217 (537)
... ++.++++++.+.. ....++.-|+||||+|.+.. +-..+|++..
T Consensus 61 ----------~~~----id~ir~li~~~~~---------------~p~~~~~kvviIdead~lt~-----~a~naLLk~L 106 (305)
T 2gno_A 61 ----------NIG----IDDIRTIKDFLNY---------------SPELYTRKYVIVHDCERMTQ-----QAANAFLKAL 106 (305)
T ss_dssp ----------CBC----HHHHHHHHHHHTS---------------CCSSSSSEEEEETTGGGBCH-----HHHHHTHHHH
T ss_pred ----------CCC----HHHHHHHHHHHhh---------------ccccCCceEEEeccHHHhCH-----HHHHHHHHHH
Confidence 001 1223444432210 01123446788899999963 2345677776
Q ss_pred hhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 218 DILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 218 e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
|-.+ +++.+|++++. +.++.+.+.++ .+.|++++.+|+.++|..
T Consensus 107 Eep~-~~t~fIl~t~~-~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 107 EEPP-EYAVIVLNTRR-WHYLLPTIKSR---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp HSCC-TTEEEEEEESC-GGGSCHHHHTT---SEEEECCCCHHHHHHHHH
T ss_pred hCCC-CCeEEEEEECC-hHhChHHHHce---eEeCCCCCHHHHHHHHHH
Confidence 7643 57899999876 45565544454 799999999999999953
No 77
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.64 E-value=2e-07 Score=95.23 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=44.1
Q ss_pred hcCCChHHHHHHHHHHHccc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 58 SRFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
+.++|.+..+..|...+... ..+..+++|+||||+||||+++.++..++..+.+.++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg 84 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSG 84 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEec
Confidence 35778888888888777542 1233579999999999999999999999876665553
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.57 E-value=1.8e-07 Score=100.71 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=94.9
Q ss_pred hHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCCHHHHHHHHHHHH
Q 009352 54 DDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 54 ~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
+.+...++|++..++.+...+.. +.+++|+||||||||++++++...++. ++.+++|.- .++..++
T Consensus 18 ~~l~~~ivGq~~~i~~l~~al~~----~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~------- 85 (500)
T 3nbx_X 18 SSLEKGLYERSHAIRLCLLAALS----GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVF------- 85 (500)
T ss_dssp HHHHTTCSSCHHHHHHHHHHHHH----TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHH-------
T ss_pred HHHHhhhHHHHHHHHHHHHHHhc----CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhc-------
Confidence 34567899999999988887765 568999999999999999999998853 567777763 3553332
Q ss_pred hhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHH
Q 009352 132 LLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (537)
Q Consensus 132 ~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~ 211 (537)
+.. .+..... .+.+.. . .. ..-..+-||+|||++++. .....
T Consensus 86 -G~~----~~~~~~~------------~g~~~~----~-------~~-----g~l~~~~IL~IDEI~r~~-----~~~q~ 127 (500)
T 3nbx_X 86 -GPL----SIQALKD------------EGRYER----L-------TS-----GYLPEAEIVFLDEIWKAG-----PAILN 127 (500)
T ss_dssp -CCB----C----------------------CB----C-------CT-----TSGGGCSEEEEESGGGCC-----HHHHH
T ss_pred -Ccc----cHHHHhh------------chhHHh----h-------hc-----cCCCcceeeeHHhHhhhc-----HHHHH
Confidence 210 0000000 000000 0 00 000023488999999774 34445
Q ss_pred HHHhhhhh---------cCCCcEEEEEEeCCCcc------ccccCCCCCCCceeecCCCCH-HHHHHHHHh
Q 009352 212 FLFGLSDI---------LKMPEVGMIFISSTSPD------TYHSNTGYVAPIHVYFPECTE-DDLRQIFMR 266 (537)
Q Consensus 212 ~L~rl~e~---------~~~~~l~vI~Is~~~~~------~f~~r~~~~~p~~I~FppYt~-~el~~IL~~ 266 (537)
.|+...+- ...+...+|+.+|..++ .++.|.. ..|++++.+. ++..+||..
T Consensus 128 ~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~----~~i~v~~p~~~ee~~~IL~~ 194 (500)
T 3nbx_X 128 TLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRML----IRLWLDKVQDKANFRSMLTS 194 (500)
T ss_dssp HHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCC----EEEECCSCCCHHHHHHHHTC
T ss_pred HHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHH----HHHHHHHhhhhhhHHHHHhc
Confidence 55554331 11222234666776555 5555552 5788888876 778888854
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.56 E-value=1.2e-07 Score=107.50 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=40.3
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+.++||+++++++...+.. ...++++|+||||||||++++.+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~--~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhC--CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999865 234579999999999999999999987
No 80
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.51 E-value=3.4e-06 Score=89.10 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=48.2
Q ss_pred HhhcCCChHHHHHHHHHHHccc---------C---CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 56 LLSRFPGRRVQILELLRLLGTL---------N---SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 56 l~~~~~~Re~qi~~L~~ll~~~---------~---~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
+-+.+.|-++..+.|...+... . .+..+++++||||||||++++.+...++.+++.++|...
T Consensus 13 Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~ 86 (444)
T 1g41_A 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (444)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhh
Confidence 3446788888888887665221 0 123569999999999999999999999999999998654
No 81
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.49 E-value=1.6e-06 Score=86.17 Aligned_cols=135 Identities=15% Similarity=0.113 Sum_probs=77.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREAL 162 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l 162 (537)
.++|+||||||||++++.+...++..++++++.+..+.. ..+....++.++
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~-----------------------------~~~~~~~i~~vf 96 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY-----------------------------VGESERAVRQVF 96 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST-----------------------------THHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh-----------------------------hhHHHHHHHHHH
Confidence 499999999999999999999998888888875543210 001111122233
Q ss_pred HHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccC------CCCChHHHHHhhhh-hcCCCcEEEEEEeCCCc
Q 009352 163 INVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD------KSSSILPFLFGLSD-ILKMPEVGMIFISSTSP 235 (537)
Q Consensus 163 ~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d------~~~~lL~~L~rl~e-~~~~~~l~vI~Is~~~~ 235 (537)
+. .+ ...+.++++||+|.+.... ....++..++...+ ......+-++.++|.+.
T Consensus 97 ~~----a~---------------~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 97 QR----AK---------------NSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPD 157 (274)
T ss_dssp HH----HH---------------HTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGG
T ss_pred HH----HH---------------hcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChh
Confidence 22 11 1245789999999875321 11123333332111 11111244444565542
Q ss_pred --cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 236 --DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 236 --~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
|.-+.|.| +....|+|+..+.++-.+||..
T Consensus 158 ~LD~al~r~g-Rfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 158 IIDPAILRPG-RLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp GSCHHHHSTT-SSCEEEECCSCCHHHHHHHHHH
T ss_pred hCCHhhcCcc-cCCeEEEeCCcCHHHHHHHHHH
Confidence 22233333 2336899999999999999853
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.48 E-value=1.4e-08 Score=115.81 Aligned_cols=137 Identities=17% Similarity=0.164 Sum_probs=82.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVRE 160 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~ 160 (537)
...+++|||||||||++++++...++.+++.++|.+..+. + -|.. . ..++.
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~-------------~-----~g~~-------~----~~i~~ 561 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-------------W-----FGES-------E----ANVRE 561 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC-------------C-----TTTS-------S----HHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh-------------h-----cCcc-------H----HHHHH
Confidence 4569999999999999999999999999999988765421 0 0100 0 12333
Q ss_pred HHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCC---------CCChHHHHHhhhhhc-CCCcEEEEEE
Q 009352 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK---------SSSILPFLFGLSDIL-KMPEVGMIFI 230 (537)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~---------~~~lL~~L~rl~e~~-~~~~l~vI~I 230 (537)
++...-. ..+.||+|||+|.|..... ...++..|+...+-. ...++.||+.
T Consensus 562 ~f~~a~~-------------------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~t 622 (806)
T 1ypw_A 562 IFDKARQ-------------------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGA 622 (806)
T ss_dssp HHHHHHH-------------------HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCC
T ss_pred HHHHHHh-------------------cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEe
Confidence 4432211 1346899999999863211 123445555443321 1123444445
Q ss_pred eCCCccccccCCCC--CCCceeecCCCCHHHHHHHHHh
Q 009352 231 SSTSPDTYHSNTGY--VAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 231 s~~~~~~f~~r~~~--~~p~~I~FppYt~~el~~IL~~ 266 (537)
+|. ++.+.+.... +....|+|+.|+.++..+|+..
T Consensus 623 TN~-~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 659 (806)
T 1ypw_A 623 TNR-PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp CBS-CGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTT
T ss_pred cCC-cccCCHHHhCccccCceeecCCCCHHHHHHHHHH
Confidence 554 3334332222 2335899999999999999953
No 83
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.44 E-value=4e-07 Score=85.57 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcccCCCC--CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009352 64 RVQILELLRLLGTLNSSM--PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~--~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~ 115 (537)
...+..+..++....... .+++|+||+|||||++++++...+ +.++++++|.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 345566666665432222 579999999999999999999877 4578888874
No 84
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.39 E-value=5.7e-06 Score=90.61 Aligned_cols=167 Identities=12% Similarity=0.046 Sum_probs=94.6
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc-------CCCeEEEeccccCCHHHHHHHHHH
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL-------SRPFVYTSCLSCYSPRILFESILN 129 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l-------~~~~~~inc~~~~s~~~l~~~Il~ 129 (537)
+..|+||+.++.+|...+.......+.+.|+|++|+|||+++..+++.. ...++++++... +...++..+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 3569999999999999997532234468999999999999999997532 235777776554 34445554433
Q ss_pred HHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCCh
Q 009352 130 QLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSI 209 (537)
Q Consensus 130 ~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~l 209 (537)
-+..... .+........+.......++..+.. ..++++||||+++... .
T Consensus 202 l~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~---------------------~~~~~LLVLDdv~~~~-------~ 250 (591)
T 1z6t_A 202 LCTRLDQ---DESFSQRLPLNIEEAKDRLRILMLR---------------------KHPRSLLILDDVWDSW-------V 250 (591)
T ss_dssp HHHHHCS---SCCSCSSCCCSHHHHHHHHHHHHHH---------------------TCTTCEEEEEEECCHH-------H
T ss_pred HHHHhcc---ccccccCCCCCHHHHHHHHHHHHcc---------------------CCCCeEEEEeCCCCHH-------H
Confidence 2111100 0000011122333433333333221 2356899999997431 1
Q ss_pred HHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeec-CCCCHHHHHHHHHh
Q 009352 210 LPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYF-PECTEDDLRQIFMR 266 (537)
Q Consensus 210 L~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~F-ppYt~~el~~IL~~ 266 (537)
+ +.+ .++..||+.|.... .....+ .....|.. .+.+.+|..+++..
T Consensus 251 l-------~~l-~~~~~ilvTsR~~~--~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~ 297 (591)
T 1z6t_A 251 L-------KAF-DSQCQILLTTRDKS--VTDSVM-GPKYVVPVESSLGKEKGLEILSL 297 (591)
T ss_dssp H-------HTT-CSSCEEEEEESCGG--GGTTCC-SCEEEEECCSSCCHHHHHHHHHH
T ss_pred H-------HHh-cCCCeEEEECCCcH--HHHhcC-CCceEeecCCCCCHHHHHHHHHH
Confidence 1 112 25677777776632 111111 11123332 58999999999954
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.37 E-value=9.2e-07 Score=81.57 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHcccC-CCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEecc
Q 009352 63 RRVQILELLRLLGTLN-SSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCL 115 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~-~~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~ 115 (537)
++..+..+..++.... ..+..++|+||+|||||++++.++..+ +..++|+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4555666666665432 235679999999999999999999876 4566777653
No 86
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.35 E-value=1.2e-06 Score=89.12 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=33.9
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++|.+.....+...+.. ....+++|+||||||||++++.+.+.++
T Consensus 25 ~i~G~~~~~~~l~~~~~~--~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVD--PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GSCSCHHHHHHHHHHHHC--GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hccChHHHHHHHHHHhhC--CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 477777765554433321 1234699999999999999999999886
No 87
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.31 E-value=1.1e-05 Score=87.91 Aligned_cols=164 Identities=14% Similarity=0.125 Sum_probs=99.3
Q ss_pred CChHHHHHHHHHHHcccCC-CCCCeEEECCCCCCHHHHHHHHHH----hcCC---CeEEEeccccC--CHHHHHHHHHHH
Q 009352 61 PGRRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFR----HLSR---PFVYTSCLSCY--SPRILFESILNQ 130 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~-~~~~l~I~G~~GtGKTsiv~~vl~----~l~~---~~~~inc~~~~--s~~~l~~~Il~~ 130 (537)
+||+.++.+|..+|..... ..+.+.|+|+.|+|||++++.+.+ .... ..++|+..+.. +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 4999999999999865322 234588999999999999999996 3332 35677655543 678889999999
Q ss_pred HhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCc-EEEEEEeCCCcccccCCCCCh
Q 009352 131 LLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGK-MIYLIFDNFELVREWDKSSSI 209 (537)
Q Consensus 131 L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~-~~vlVLDe~D~L~~~d~~~~l 209 (537)
+....... ...... ..+..+....+++ .+ .++ +++||||+++.... +
T Consensus 211 l~~~~~~~--~~~~~~-~~~~~~l~~~l~~-------~L----------------~~~kr~LlVLDdv~~~~~------~ 258 (549)
T 2a5y_B 211 LKSEDDLL--NFPSVE-HVTSVVLKRMICN-------AL----------------IDRPNTLFVFDDVVQEET------I 258 (549)
T ss_dssp HTTTSCCT--TCCCCT-TCCHHHHHHHHHH-------HH----------------TTSTTEEEEEEEECCHHH------H
T ss_pred HhcCcccc--cccccc-cccHHHHHHHHHH-------HH----------------cCCCcEEEEEECCCCchh------h
Confidence 86531100 000000 0011222222222 22 233 78999999986432 1
Q ss_pred HHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCCCCHHHHHHHHHhc
Q 009352 210 LPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (537)
Q Consensus 210 L~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~FppYt~~el~~IL~~~ 267 (537)
.+... ++.+||+.|... ......+. ....+..++.+.+|..+++.+.
T Consensus 259 -----~~~~~---~gs~ilvTTR~~--~v~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 259 -----RWAQE---LRLRCLVTTRDV--EISNAASQ-TCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp -----HHHHH---TTCEEEEEESBG--GGGGGCCS-CEEEEECCCCCHHHHHHHHHHT
T ss_pred -----ccccc---CCCEEEEEcCCH--HHHHHcCC-CCeEEECCCCCHHHHHHHHHHH
Confidence 11121 457777777653 22211211 1135888999999999999654
No 88
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.16 E-value=1.8e-05 Score=93.51 Aligned_cols=164 Identities=12% Similarity=0.030 Sum_probs=96.5
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---C----CCeEEEeccccCCH--HHHHHHHH
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---S----RPFVYTSCLSCYSP--RILFESIL 128 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~----~~~~~inc~~~~s~--~~l~~~Il 128 (537)
..|+||++++++|..+|.......+.+.|+|+.|+|||++++.+++.. . ..+.+++....... ...+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 469999999999999996432334458899999999999999988652 2 24557776553322 33356666
Q ss_pred HHHhhccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCC
Q 009352 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSS 208 (537)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~ 208 (537)
..+....... ........+....|+..+ . .++++++||||+++....++
T Consensus 204 ~~l~~~~~~~------~~~~~~~~~~~~~l~~~l-------~--------------~~~~~~LlvlDd~~~~~~~~---- 252 (1249)
T 3sfz_A 204 MRLDQEESFS------QRLPLNIEEAKDRLRVLM-------L--------------RKHPRSLLILDDVWDPWVLK---- 252 (1249)
T ss_dssp HHHTTTCTTC------SSCCSSHHHHHHHHHHHT-------S--------------SSSCSCEEEEESCCCHHHHT----
T ss_pred HHhhhhcccc------cCCCCCHHHHHHHHHHHH-------h--------------ccCCCEEEEEecCCCHHHHH----
Confidence 6664432110 111223333222222221 1 12347899999998553221
Q ss_pred hHHHHHhhhhhcCCCcEEEEEEeCCCccccccCCCCCCCceeecCC-CCHHHHHHHHHh
Q 009352 209 ILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPE-CTEDDLRQIFMR 266 (537)
Q Consensus 209 lL~~L~rl~e~~~~~~l~vI~Is~~~~~~f~~r~~~~~p~~I~Fpp-Yt~~el~~IL~~ 266 (537)
.+ .++.+||+.|... ....... .....+..++ .+.+|..+++..
T Consensus 253 ---------~~--~~~~~ilvTtR~~--~~~~~~~-~~~~~~~~~~~l~~~~a~~l~~~ 297 (1249)
T 3sfz_A 253 ---------AF--DNQCQILLTTRDK--SVTDSVM-GPKHVVPVESGLGREKGLEILSL 297 (1249)
T ss_dssp ---------TT--CSSCEEEEEESST--TTTTTCC-SCBCCEECCSSCCHHHHHHHHHH
T ss_pred ---------hh--cCCCEEEEEcCCH--HHHHhhc-CCceEEEecCCCCHHHHHHHHHH
Confidence 12 2567777777754 1111111 1113566665 999999999853
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.09 E-value=3.1e-06 Score=85.50 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHcccCC-CCCCeEEECCCCCCHHHHHHHHHHhcC----CCeEEEecc
Q 009352 63 RRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRHLS----RPFVYTSCL 115 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~-~~~~l~I~G~~GtGKTsiv~~vl~~l~----~~~~~inc~ 115 (537)
|...+..+..++..... ...+++||||+|||||+++.++...+. .++.|++|.
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 44455556566654222 246799999999999999999997654 678888864
No 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.08 E-value=1.2e-05 Score=92.18 Aligned_cols=170 Identities=14% Similarity=0.191 Sum_probs=100.9
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh------cCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH------LSRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~------l~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.+||+.++.+|...|... ++.+.+.|+|+.|.|||++++.+.+. .....++++..+..+...++..|+..+..
T Consensus 130 ~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 399999999999988642 23456899999999999999999853 23457888888777888888888876644
Q ss_pred ccccccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHH
Q 009352 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (537)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L 213 (537)
..+....... .......-...+...+...++. ..+++++||||+++.... +..|
T Consensus 209 i~~~~~~~~d---~~~~ip~~leeL~e~Lr~lL~~----------------l~~KRvLLVLDDVwd~eq-------Le~f 262 (1221)
T 1vt4_I 209 IDPNWTSRSD---HSSNIKLRIHSIQAELRRLLKS----------------KPYENCLLVLLNVQNAKA-------WNAF 262 (1221)
T ss_dssp HCSSSTTTSC---CCSSHHHHHHHHHHHHHHHHHH----------------STTSSCEEEEESCCCHHH-------HHHH
T ss_pred cCcccccccc---cccCCCCCHHHHHHHHHHHHHh----------------hcCCCEEEEEeCcChHHH-------HHhh
Confidence 3211100000 0001111111122222221111 134678999999986321 2221
Q ss_pred HhhhhhcCCCcEEEEEEeCCCc-cccccCCCCCCCceeecC----CCCHHHHHHHHHhc
Q 009352 214 FGLSDILKMPEVGMIFISSTSP-DTYHSNTGYVAPIHVYFP----ECTEDDLRQIFMRN 267 (537)
Q Consensus 214 ~rl~e~~~~~~l~vI~Is~~~~-~~f~~r~~~~~p~~I~Fp----pYt~~el~~IL~~~ 267 (537)
+ ++..||+.|.... ...... .....+.++ +.+.+|..+++...
T Consensus 263 -------~-pGSRILVTTRd~~Va~~l~g---~~vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 263 -------N-LSCKILLTTRFKQVTDFLSA---ATTTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp -------H-SSCCEEEECSCSHHHHHHHH---HSSCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred -------C-CCeEEEEeccChHHHHhcCC---CeEEEecCccccCCcCHHHHHHHHHHH
Confidence 1 4677777777642 111110 012355555 79999999999643
No 91
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.02 E-value=6.6e-05 Score=78.15 Aligned_cols=158 Identities=18% Similarity=0.252 Sum_probs=94.5
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
+.|....+.++...+........+++|+|++||||+.+++.+-.... .+++.|||.... ..+++ ..|.|+.+
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~--~~~~~---~elfg~~~ 213 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP--RDIFE---AELFGYEK 213 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC--HHHHH---HHHHCBCT
T ss_pred hhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC--HHHHH---HHhcCCCC
Confidence 55666677777776665444456799999999999999988877654 489999998643 33333 45666654
Q ss_pred cccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhh
Q 009352 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (537)
Q Consensus 137 ~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl 216 (537)
....|.... ... .++. ..+. +|+|||++.|-. ++...|++.
T Consensus 214 g~~tga~~~-----~~g-------~~~~--------------------a~~g--tlfldei~~l~~-----~~q~~Ll~~ 254 (387)
T 1ny5_A 214 GAFTGAVSS-----KEG-------FFEL--------------------ADGG--TLFLDEIGELSL-----EAQAKLLRV 254 (387)
T ss_dssp TSSTTCCSC-----BCC-------HHHH--------------------TTTS--EEEEESGGGCCH-----HHHHHHHHH
T ss_pred CCCCCcccc-----cCC-------ceee--------------------CCCc--EEEEcChhhCCH-----HHHHHHHHH
Confidence 333332111 111 2221 1222 678999998853 334445554
Q ss_pred hhh---cC-------CCcEEEEEEeCCCcccc----------ccCCCCCCCceeecCCCCH--HHHHHHH
Q 009352 217 SDI---LK-------MPEVGMIFISSTSPDTY----------HSNTGYVAPIHVYFPECTE--DDLRQIF 264 (537)
Q Consensus 217 ~e~---~~-------~~~l~vI~Is~~~~~~f----------~~r~~~~~p~~I~FppYt~--~el~~IL 264 (537)
.+- .+ ..++.+|+.+|...+.. +.|. ....|++||... +++..+.
T Consensus 255 l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl---~~~~i~lPpLreR~~Di~~l~ 321 (387)
T 1ny5_A 255 IESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRL---GVIEIEIPPLRERKEDIIPLA 321 (387)
T ss_dssp HHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH---TTEEEECCCGGGCHHHHHHHH
T ss_pred HhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhh---cCCeecCCcchhccccHHHHH
Confidence 221 10 12578888888754222 1122 236899999865 6666555
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.99 E-value=6.7e-06 Score=73.87 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=30.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~ 116 (537)
++..++|+||+|+|||++++.+...+ +...+|+++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 45679999999999999999999877 45678887644
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.92 E-value=4.6e-05 Score=95.78 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=83.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVR 159 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l-~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~ 159 (537)
+.+++++||||||||++++.++..+ +..+..+||....++..+...+ .+.......
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i-~~~~~~~~~---------------------- 1323 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSAL-HRHTNYVTT---------------------- 1323 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHH-HHHBCCEEE----------------------
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHH-HHHhhhccc----------------------
Confidence 5789999999999999998888766 3567778988777765443322 221111000
Q ss_pred HHHHHHHHHhhhhhhcccccc-cccccCCcEEEEEEeCCCcccccC-CCCChHHHHHhhhhh---cC--------CCcEE
Q 009352 160 EALINVIDSLKENAEKTSTSK-LKGQVNGKMIYLIFDNFELVREWD-KSSSILPFLFGLSDI---LK--------MPEVG 226 (537)
Q Consensus 160 ~~l~~~~~~l~~~~~~~s~g~-~~~~~~~~~~vlVLDe~D~L~~~d-~~~~lL~~L~rl~e~---~~--------~~~l~ 226 (537)
.+|. +.+.+.++.+||+|||++...... +.+..+..|..+.|. .. ..++.
T Consensus 1324 -----------------~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~ 1386 (2695)
T 4akg_A 1324 -----------------SKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIH 1386 (2695)
T ss_dssp -----------------TTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEE
T ss_pred -----------------cCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEE
Confidence 0000 011124567899999998653211 223455555444442 11 12356
Q ss_pred EEEEeCCCc--------cccccCCCCCCCceeecCCCCHHHHHHHHH
Q 009352 227 MIFISSTSP--------DTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (537)
Q Consensus 227 vI~Is~~~~--------~~f~~r~~~~~p~~I~FppYt~~el~~IL~ 265 (537)
+|..+|.+. .+|.++. ..|+++.++.+++.+|+.
T Consensus 1387 lIaA~Npp~~gGR~~l~~rllRrf-----~vi~i~~P~~~~l~~I~~ 1428 (2695)
T 4akg_A 1387 IVGACNPPTDPGRIPMSERFTRHA-----AILYLGYPSGKSLSQIYE 1428 (2695)
T ss_dssp EEEEECCTTSTTCCCCCHHHHTTE-----EEEECCCCTTTHHHHHHH
T ss_pred EEEecCCCccCCCccCChhhhhee-----eEEEeCCCCHHHHHHHHH
Confidence 666666542 2333322 578999999999999985
No 94
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.89 E-value=5e-05 Score=78.50 Aligned_cols=159 Identities=23% Similarity=0.346 Sum_probs=95.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYSPRILFESILNQLLLHKK 136 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~~~~s~~~l~~~Il~~L~~~~~ 136 (537)
.+.|....+.++...+........+++|+|++||||+.+++.+-...+. .++.|||..... .++ ...|.|+.+
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~--~~~---~~~lfg~~~ 204 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQ--ELA---ESELFGHEK 204 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCT--TTH---HHHHHEECS
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCCh--HHH---HHHhcCccc
Confidence 3566666777766666544344567999999999999999988877654 389999987643 222 344566654
Q ss_pred cccCCCCccccCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhh
Q 009352 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (537)
Q Consensus 137 ~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl 216 (537)
....|....+ .. .++. ..+. .|+|||++.|-. .+-..|++.
T Consensus 205 g~~tga~~~~-----~g-------~~~~--------------------a~~g--tlfldei~~l~~-----~~Q~~Ll~~ 245 (368)
T 3dzd_A 205 GAFTGALTRK-----KG-------KLEL--------------------ADQG--TLFLDEVGELDQ-----RVQAKLLRV 245 (368)
T ss_dssp CSSSSCCCCE-----EC-------HHHH--------------------TTTS--EEEEETGGGSCH-----HHHHHHHHH
T ss_pred cccCCccccc-----CC-------hHhh--------------------cCCC--eEEecChhhCCH-----HHHHHHHHH
Confidence 4333321111 11 2221 1222 588999999853 333444443
Q ss_pred hhh---cC-------CCcEEEEEEeCCCccc----------cccCCCCCCCceeecCCCCH--HHHHHHH
Q 009352 217 SDI---LK-------MPEVGMIFISSTSPDT----------YHSNTGYVAPIHVYFPECTE--DDLRQIF 264 (537)
Q Consensus 217 ~e~---~~-------~~~l~vI~Is~~~~~~----------f~~r~~~~~p~~I~FppYt~--~el~~IL 264 (537)
.+- .+ ..++.+|+.++..+.. ++.|. ....|++||..+ +++..++
T Consensus 246 l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl---~~~~i~lPpLreR~~Di~~l~ 312 (368)
T 3dzd_A 246 LETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRL---SVFQIYLPPLRERGKDVILLA 312 (368)
T ss_dssp HHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH---TSEEEECCCGGGSTTHHHHHH
T ss_pred HHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHh---CCeEEeCCChhhchhhHHHHH
Confidence 321 11 1257788888875422 22222 235899999977 6766665
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.66 E-value=0.00042 Score=87.93 Aligned_cols=140 Identities=16% Similarity=0.239 Sum_probs=85.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC-CCeEEEeccccCCHHHHHHHHHHHHhhccccccC-CCCccccCCCchhHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS-RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFN-GYSSAKRCEKPSDFVIFV 158 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~-~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~-g~~~~~r~~~~~~f~~~L 158 (537)
+.++++.||+|||||+++..++..+. ..++.|||....++..+...+-..+ ..... .. |.
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~-e~~~~-~~~G~---------------- 1365 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHC-EYKRT-PSGET---------------- 1365 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHE-EEEEC-TTSCE----------------
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcc-eEEec-cCCCc----------------
Confidence 67899999999999999998888764 3567889988888766554442221 10000 00 10
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCccccc-CCCCChHHHHHhhhhh---c--------CCCcEE
Q 009352 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-DKSSSILPFLFGLSDI---L--------KMPEVG 226 (537)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~-d~~~~lL~~L~rl~e~---~--------~~~~l~ 226 (537)
.+.+...++.+|+++||++.-... -+.+..+..|..+.|. . .++++.
T Consensus 1366 ---------------------~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~ 1424 (3245)
T 3vkg_A 1366 ---------------------VLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQ 1424 (3245)
T ss_dssp ---------------------EEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEE
T ss_pred ---------------------ccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeE
Confidence 000111367899999999854321 1234455555444332 1 134566
Q ss_pred EEEEeCCC--------ccccccCCCCCCCceeecCCCCHHHHHHHH
Q 009352 227 MIFISSTS--------PDTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (537)
Q Consensus 227 vI~Is~~~--------~~~f~~r~~~~~p~~I~FppYt~~el~~IL 264 (537)
+|...|.+ +.+|.++. ..++++.++.+++..|.
T Consensus 1425 ~vaamnPp~~gGr~~l~~Rf~r~F-----~vi~i~~ps~esL~~If 1465 (3245)
T 3vkg_A 1425 FVGACNPPTDAGRVQLTHRFLRHA-----PILLVDFPSTSSLTQIY 1465 (3245)
T ss_dssp EEEEECCTTSTTCCCCCHHHHTTC-----CEEECCCCCHHHHHHHH
T ss_pred EEEEcCCCCCCCCccCCHHHHhhc-----eEEEeCCCCHHHHHHHH
Confidence 66665543 13444333 47899999999999995
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.57 E-value=0.00018 Score=67.74 Aligned_cols=53 Identities=26% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009352 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (537)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~ 124 (537)
.++.....++..+.|+|++|+|||+++..++...+.+++|+++....+...+.
T Consensus 11 ~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 11 SLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp HHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHH
T ss_pred HhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHH
Confidence 34443344455689999999999999999987555688999887655555443
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.54 E-value=3.4e-05 Score=72.76 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=24.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc--------C-CCeEEEecccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL--------S-RPFVYTSCLSC 117 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l--------~-~~~~~inc~~~ 117 (537)
..+|+|+||||||+.+...+... + .++.+.||.+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 36799999999999877765332 3 45556777654
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.52 E-value=0.00051 Score=86.45 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHH
Q 009352 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPR 121 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~ 121 (537)
.-+..|...+.. ..+..+.||+|||||++++++.+.++..++.+||.+..+..
T Consensus 633 r~~~tl~~Al~~----~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~ 685 (2695)
T 4akg_A 633 IGFATLTDSLHQ----KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQ 685 (2695)
T ss_dssp HHHHHHHHHHHT----TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHH
T ss_pred HHHHHHHHHHHh----CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChh
Confidence 455666666654 45788999999999999999999999999999998766543
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.47 E-value=0.00013 Score=73.55 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=27.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
+..++|+||||||||+++.+++.+.+.++.|++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 3457899999999999999999875556667765
No 100
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.30 E-value=0.00086 Score=64.01 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=37.3
Q ss_pred HHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh--c-------CCCeEEEeccccCCHHHH
Q 009352 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--L-------SRPFVYTSCLSCYSPRIL 123 (537)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~--l-------~~~~~~inc~~~~s~~~l 123 (537)
.+++....++..+.|+||+|+|||++++.++.. + +...+|++......+..+
T Consensus 15 ~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 15 KLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp HHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred HhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 345443444556899999999999999999974 3 346889988765455444
No 101
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.25 E-value=6.6e-05 Score=82.53 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=37.2
Q ss_pred HHhhcCCChHHHHHHHHHHHcccC---------CCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 55 DLLSRFPGRRVQILELLRLLGTLN---------SSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 55 ~l~~~~~~Re~qi~~L~~ll~~~~---------~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.+...+.|.+.....|...+.... .+..+++++||||||||++++++.+.++.
T Consensus 292 ~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 292 SIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp HTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred hhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC
Confidence 344567888876666654443321 01127999999999999999999988764
No 102
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.22 E-value=0.0017 Score=66.25 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=40.7
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh--c-------CCCeEEEeccccCCHHHHHH
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--L-------SRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~--l-------~~~~~~inc~~~~s~~~l~~ 125 (537)
.|-.+|+....++..+.|+|+||+|||+++..++.. + +.+++||++.....+..+.+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 344455443344455899999999999999999876 2 45789999877666665544
No 103
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.21 E-value=0.00061 Score=68.96 Aligned_cols=57 Identities=19% Similarity=0.129 Sum_probs=40.6
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHHHH
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRILFE 125 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---------~~~~~~inc~~~~s~~~l~~ 125 (537)
.|-.+|+....++..+.|+|+||+|||+++..++... +.+++|+++....++..+.+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~ 160 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN 160 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 3444454333445568999999999999999998764 45789998877666665543
No 104
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.18 E-value=0.0023 Score=60.30 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=32.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHH
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~ 126 (537)
++..+.|.||+|+|||++++.++..+ +..+.|+++.. +...+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS--CHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc--CHHHHHHH
Confidence 45568999999999999999998553 35778887644 34444443
No 105
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.12 E-value=0.003 Score=65.86 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHH
Q 009352 73 LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRI 122 (537)
Q Consensus 73 ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---------~~~~~~inc~~~~s~~~ 122 (537)
+|+..+.++..+.|+||+|+|||++++.++-.. +...+|++..+...+..
T Consensus 170 lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r 228 (400)
T 3lda_A 170 LLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR 228 (400)
T ss_dssp HTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH
T ss_pred HhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH
Confidence 343333344568899999999999999776332 23588998776555543
No 106
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.02 E-value=0.0025 Score=65.37 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=37.0
Q ss_pred HHHHHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009352 70 LLRLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (537)
Q Consensus 70 L~~ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~ 120 (537)
|-.+|+ ....++..+.|+||||+|||+++..++..+ +.+++||+......+
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch
Confidence 334455 333445568999999999999999998764 457889987665554
No 107
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.91 E-value=0.0036 Score=64.47 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009352 70 LLRLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (537)
Q Consensus 70 L~~ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s 119 (537)
|-.+|+ ....++..+.|+|+||+|||+++..++.+. +.+++|+++.....
T Consensus 62 LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~ 115 (366)
T 1xp8_A 62 LDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD 115 (366)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred HHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh
Confidence 333454 333345568999999999999999988654 46899999875443
No 108
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.87 E-value=0.0015 Score=65.66 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=33.4
Q ss_pred ccCCCCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCH
Q 009352 76 TLNSSMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSP 120 (537)
Q Consensus 76 ~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc~~~~s~ 120 (537)
....++ .+.|+||||+|||+++..++.+. +..++||++.+...+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 333334 58899999999999988887553 467899998776665
No 109
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.0029 Score=60.35 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=35.7
Q ss_pred HcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHH
Q 009352 74 LGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 74 l~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~I 127 (537)
|+....++..+.|+|+||+|||+++..++... +.+++|++..+ +...+.+.+
T Consensus 16 l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 16 LHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS--CHHHHHHHH
T ss_pred cCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC--CHHHHHHHH
Confidence 34333445678999999999999988776543 45888988654 344554443
No 110
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.84 E-value=0.002 Score=65.86 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=35.6
Q ss_pred HHHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009352 72 RLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (537)
Q Consensus 72 ~ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~ 120 (537)
.+|+ ....++..+.|+|+||+|||+++..++... +.+++|++......+
T Consensus 51 ~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 51 VALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp HHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred HHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH
Confidence 3455 333445668999999999999999988653 458899987654443
No 111
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.82 E-value=0.0065 Score=56.31 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHH-HHHHhc
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII-QVFRHL 105 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~-~vl~~l 105 (537)
-|.-|...+..++. +.++++.+|+|+|||.+.. .++..+
T Consensus 26 ~~~~Q~~~i~~~~~-----~~~~lv~apTGsGKT~~~~~~~~~~~ 65 (206)
T 1vec_A 26 PSPIQEESIPIALS-----GRDILARAKNGTGKSGAYLIPLLERL 65 (206)
T ss_dssp CCHHHHHHHHHHHT-----TCCEEEECCSSSTTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcc-----CCCEEEECCCCCchHHHHHHHHHHHh
Confidence 47778777776664 3579999999999996443 444544
No 112
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.80 E-value=0.0056 Score=57.63 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi-v~~vl~~l 105 (537)
.-|.-|...+..++.. .++++.+|+|+|||.+ +-.++..+
T Consensus 36 ~~~~~Q~~~i~~~~~~-----~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEG-----HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcC-----CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3577888777776643 5799999999999976 55566654
No 113
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.79 E-value=0.0024 Score=64.34 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=40.1
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------------C----CCeEEEeccccCCHHHHHHH
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------------S----RPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---------------~----~~~~~inc~~~~s~~~l~~~ 126 (537)
.|=.+|+....++..+.|+|+||+|||+++..++.+. + .+++|++......+..+.+.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 3334454333344568999999999999999988652 2 47889988776666665543
No 114
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.78 E-value=0.0054 Score=57.76 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=33.7
Q ss_pred HHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---------CCeEEEeccccCCH
Q 009352 73 LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---------RPFVYTSCLSCYSP 120 (537)
Q Consensus 73 ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---------~~~~~inc~~~~s~ 120 (537)
+++....++..+.|.||+|+||||+++.++..+. ...+|++.......
T Consensus 17 ~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 17 LLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp HTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred HhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 3433334455688999999999999999987432 23788887654444
No 115
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.71 E-value=0.0064 Score=56.36 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi-v~~vl~~l 105 (537)
.-|.-|...+..++.. .++++.+|+|+|||.+ +..+++.+
T Consensus 23 ~~~~~Q~~~i~~~~~~-----~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 23 TPTPIQAAALPLALEG-----KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHcCC-----CCEEEECCCCChHHHHHHHHHHHHH
Confidence 3467777777766643 5799999999999976 55555554
No 116
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.68 E-value=0.0011 Score=62.44 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
..+..|..++.. ......++||||||||||+++.++++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445666666654 111225999999999999999999988753
No 117
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.67 E-value=0.007 Score=58.18 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~in 113 (537)
+.-|+.|...+..++.. ..++|.||+|+|||.++..++..++.+.+++.
T Consensus 92 ~~l~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp CCCCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CCcCHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 45677888887776643 35999999999999999999888876666663
No 118
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.65 E-value=0.0019 Score=64.20 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=29.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
.++|.||||+||||+++.+++.++..+++|++...
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 37899999999999999999988656788887443
No 119
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.64 E-value=0.0093 Score=75.97 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCH
Q 009352 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSP 120 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~ 120 (537)
.-+..|...+.. .-...+.||+|||||.+++.+.+.++..++.+||.+-.+.
T Consensus 592 rcy~tl~~Al~~----~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~ 643 (3245)
T 3vkg_A 592 RCYLTLTQALES----RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL 643 (3245)
T ss_dssp HHHHHHHHHHHT----TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH
T ss_pred HHHHHHHHHHHh----cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 345666666654 2345689999999999999999999999999999776553
No 120
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.64 E-value=0.0028 Score=64.99 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=35.5
Q ss_pred HHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009352 73 LLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (537)
Q Consensus 73 ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~ 120 (537)
+|+ ....++..++|+|+||+|||+++..++.+. +.+++||++.....+
T Consensus 54 ~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 54 ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 105 (356)
T ss_dssp HTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred HhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 354 333445568999999999999999988653 468999998665543
No 121
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.56 E-value=0.0018 Score=58.73 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=27.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+|.|++|+||||+.+.+.+.++.+++.++.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 58999999999999999999999877766553
No 122
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.55 E-value=0.0027 Score=64.99 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=35.9
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---------CCeEEEeccccCCHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---------RPFVYTSCLSCYSPR 121 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---------~~~~~inc~~~~s~~ 121 (537)
|-.+|+..+.++..+.|+||+|+|||++++.++.... -.++||+......++
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 3344443333445588999999999999999997762 245899876654343
No 123
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.48 E-value=0.0049 Score=75.51 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=38.6
Q ss_pred HHHHHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009352 70 LLRLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (537)
Q Consensus 70 L~~ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~ 120 (537)
|-.+|+ ....++.+++||||||||||+++.+++.+. +..++|+++.+...+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCH
Confidence 445566 444456789999999999999999988653 468899988766554
No 124
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.47 E-value=0.0052 Score=57.16 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=32.0
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.-|+.|...+..++.. .+++|.+|+|+|||.+....+..
T Consensus 31 ~~~l~~~Q~~~i~~~~~~-----~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEG-----KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCCCCHHHHHHHHHHHTT-----CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhcC-----CCEEEEcCCCCCHHHHHHHHHHH
Confidence 356678888888777743 57999999999999877766654
No 125
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.45 E-value=0.0065 Score=58.10 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi-v~~vl~~l 105 (537)
-|.-|...+..++.. .++++.+|+|+|||.+ +..+++.+
T Consensus 53 ~~~~Q~~ai~~i~~~-----~~~li~apTGsGKT~~~~l~~l~~l 92 (237)
T 3bor_A 53 PSAIQQRAIIPCIKG-----YDVIAQAQSGTGKTATFAISILQQL 92 (237)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEECCCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 577888777777643 5799999999999966 44555554
No 126
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.45 E-value=0.00094 Score=63.97 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=26.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc 114 (537)
+..++++|++|+||||.+..++..+ +.++.+++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~ 48 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP 48 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 4457899999999999888888665 346677653
No 127
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.40 E-value=0.0039 Score=69.06 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+.|.+.+...+.. .+..+|+||||||||+++-.++.++
T Consensus 192 ~~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 192 TSQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4777777777754 3467999999999997777666553
No 128
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.32 E-value=0.041 Score=55.17 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHH
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF 102 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl 102 (537)
.-|..|...+..++.. ..++++.+|+|+|||.+....+
T Consensus 28 ~~~~~Q~~~i~~~~~~----~~~~l~~~~TGsGKT~~~~~~~ 65 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLND----EYNIVAQARTGSGKTASFAIPL 65 (367)
T ss_dssp SCCHHHHHHHHHHHHT----CSEEEEECCSSSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC----CCCEEEECCCCChHHHHHHHHH
Confidence 3577888887777754 3579999999999997755443
No 129
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.31 E-value=0.0084 Score=63.26 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=43.8
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.|-.+++ ...++..++|.|+||+|||+++..++... +.+++|+++- .++..+..+++....+
T Consensus 189 ~LD~~lg-Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~~~~~ 254 (444)
T 2q6t_A 189 ELDQLIG-TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMCSEAR 254 (444)
T ss_dssp HHHHHHC-CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHHHHTT
T ss_pred hhhhhcC-CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHHHHcC
Confidence 3444453 34455568999999999999999888653 4578888874 4667777777765544
No 130
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.29 E-value=0.015 Score=58.45 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=42.6
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
|-.+++ ...++..++|.|+||+|||+++..++... +.+++|+++- .+...+..+++....
T Consensus 58 LD~~lg-Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE--~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 58 LDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE--MGKKENIKRLIVTAG 120 (315)
T ss_dssp HHHHHS-SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS--SCHHHHHHHHHHHHT
T ss_pred HHhhcC-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 334442 34455668999999999999999988653 2477888765 567777777776543
No 131
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.27 E-value=0.017 Score=61.00 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=38.0
Q ss_pred CCCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 78 NSSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 78 ~~~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
..++..++|.|+||+|||+++..++..+ +.+++|++... +...+..+++...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~--s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM--SAQQLVMRMLCAE 255 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHHHH
Confidence 3445568999999999999999988653 35788887643 5667777765443
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.25 E-value=0.0029 Score=57.81 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.+.|+|.|++|+||||+.+.+.+.++.+++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356899999999999999999999986544
No 133
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.24 E-value=0.014 Score=59.03 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=59.7
Q ss_pred EEEEEEeCCCc-ccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc-----cccccCCCCCCCceeecCCCCHHHHHH
Q 009352 189 MIYLIFDNFEL-VREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP-----DTYHSNTGYVAPIHVYFPECTEDDLRQ 262 (537)
Q Consensus 189 ~~vlVLDe~D~-L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~-----~~f~~r~~~~~p~~I~FppYt~~el~~ 262 (537)
.-|+||||++. +. .+...+|....|..+ ++..+|++++... .++...+.+ ....+.|.+.+.+++.+
T Consensus 77 ~kvvii~~~~~kl~-----~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 77 RQTLLLLLPENGPN-----AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp CEEEEEECCSSCCC-----TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEECCCCTTHHHH
T ss_pred CeEEEEECCCCCCC-----hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEeeCCCHHHHHH
Confidence 45778899998 64 244566767666543 5788888886531 223222221 22589999999999997
Q ss_pred HHHhcC--CChhhhhHHHHHHhhccccccCCHHHHHHHHHHh
Q 009352 263 IFMRNQ--ANQKLYSSFLDIVLRPFCRITKRVDELSTAFSLL 302 (537)
Q Consensus 263 IL~~~r--~~~~l~~~~~~~il~~~~~~~r~l~~L~~~~~~l 302 (537)
.|.... ....+.+..++.+++...+ |+..+...+.+|
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g---dl~~~~~elekl 188 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG---NLLALAQALERL 188 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch---HHHHHHHHHHHH
Confidence 774321 1122444555555554443 444444444443
No 134
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.22 E-value=0.0028 Score=58.86 Aligned_cols=30 Identities=23% Similarity=0.639 Sum_probs=25.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
++|+|.||+|+||||+++.+++.....+.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~ 31 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEE
Confidence 579999999999999999999987654444
No 135
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.21 E-value=0.036 Score=52.91 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=28.7
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcc
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPD 236 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~ 236 (537)
..-+||+||+|++.++. ....+..+....+ ++..+|+.|.+.+.
T Consensus 176 ~~~~lViDEah~l~~~~----~~~~~~~i~~~~~-~~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMG----FEPQIRKIVDQIR-PDRQTLMWSATWPK 219 (242)
T ss_dssp TCCEEEETTHHHHHHTT----CHHHHHHHHTTSC-SSCEEEEEESCCCH
T ss_pred cccEEEEeCHHHHhhhC----cHHHHHHHHHhCC-ccceEEEEEeecCH
Confidence 34578999999998633 3344444544443 46788888888663
No 136
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.19 E-value=0.033 Score=60.27 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=49.5
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc-cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP-DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~-~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
..+|||+||+..|... .+.++...|.++...-.-..+.+|+.++.+- +.+...+....+..|-|.--++.+...||..
T Consensus 343 P~ivvVIDE~~~L~~~-~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd~ 421 (574)
T 2iut_A 343 PTIVVVVDEFADMMMI-VGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQ 421 (574)
T ss_dssp CEEEEEESCCTTHHHH-TCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHSS
T ss_pred CcEEEEEeCHHHHhhh-hhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcCc
Confidence 4689999999988642 1234445555554443334688999888753 2221111112336889999999999999953
No 137
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.16 E-value=0.013 Score=62.76 Aligned_cols=53 Identities=8% Similarity=-0.051 Sum_probs=39.4
Q ss_pred CCCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 78 NSSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 78 ~~~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
..++..++|.|+||+|||+++..++.+. +.+++|++..+ ++..+..+++....
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 3445568999999999999999988764 35788888644 56777777665543
No 138
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.14 E-value=0.0034 Score=56.34 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=24.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|+|.|++|+||||+++.+.+.++..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 5889999999999999999999885543
No 139
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.11 E-value=0.0039 Score=58.02 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=26.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
++..|+|.|++|+||||+++.+.+.++.+++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 3567999999999999999999999986654
No 140
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.08 E-value=0.019 Score=58.35 Aligned_cols=59 Identities=19% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.+++ ...++.-++|.|+||+|||+++..++... +.+++|++.- .+...+..+++....+
T Consensus 38 ~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE--ms~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 38 NYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE--MSAEQLALRALSDLTS 99 (338)
T ss_dssp HHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS--SCHHHHHHHHHHHHHC
T ss_pred HHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC--CCHHHHHHHHHHHhhC
Confidence 3343 34455668999999999999999988763 4678888763 4677888887665533
No 141
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.05 E-value=0.012 Score=54.78 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHcccCC-CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009352 61 PGRRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~-~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~ 115 (537)
+.|+++++.|...+..... .+..+.|.|++|+||||+++.+...+ +..+.+++..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 1 MELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CCHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3578889999888765321 22347899999999999999998876 4455555443
No 142
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.05 E-value=0.08 Score=50.90 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHH
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII 98 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv 98 (537)
.-|.-|...+..++. +..+++.+|+|+|||.+.
T Consensus 65 ~~~~~Q~~~i~~i~~-----~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ-----GRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp SCCHHHHHHHHHHHT-----TCCEEEECCTTSCHHHHH
T ss_pred CCCHHHHHHHHHHhC-----CCCEEEEcCCCCCchhHh
Confidence 447777777776664 357999999999999653
No 143
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.03 E-value=0.1 Score=48.68 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF 102 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl 102 (537)
-|.-|...+..++.. .++++.+|+|+|||.+....+
T Consensus 37 ~~~~Q~~~i~~~~~~-----~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 37 PSEVQHECIPQAILG-----MDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCCCchhhhhhHHH
Confidence 578888888777753 469999999999996544433
No 144
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.01 E-value=0.047 Score=56.09 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHH-HHHHhc
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII-QVFRHL 105 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~-~vl~~l 105 (537)
-|.-|...+..++.. .++++.+|+|+|||.+.. .+++.+
T Consensus 60 ~~~~Q~~ai~~i~~~-----~~~lv~a~TGsGKT~~~~~~~~~~l 99 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKG-----RDVIAQSQSGTGKTATFSISVLQCL 99 (410)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCCCCchHHHHHHHHHHH
Confidence 567777777776643 579999999999995544 445544
No 145
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.00 E-value=0.0052 Score=55.96 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=25.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.+.|+|.|++|+||||+++.+.+.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 45799999999999999999999987543
No 146
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.98 E-value=0.069 Score=51.79 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi 97 (537)
-|.-|...+..++.. .++++.+|+|+|||.+
T Consensus 77 ~~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEG-----RDLLAAAKTGSGKTLA 107 (262)
T ss_dssp CCHHHHHHHHHHHHT-----CCCEECCCTTSCHHHH
T ss_pred CCHHHHHHHHHHhCC-----CcEEEEccCCCCchHH
Confidence 466777777666643 5799999999999965
No 147
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.97 E-value=0.037 Score=52.40 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi-v~~vl~~l 105 (537)
-|.-|...+..++. +.++++.+|+|+|||.+ +..++..+
T Consensus 47 ~~~~Q~~~i~~~~~-----~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 47 PSPVQLKAIPLGRC-----GLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CCHHHHHHHHHHHT-----TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhC-----CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 47777777776654 35799999999999976 44555554
No 148
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.95 E-value=0.071 Score=50.42 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi 97 (537)
-|.-|...+..++. +..+++.+|+|+|||.+
T Consensus 48 ~~~~Q~~~i~~~~~-----~~~~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 48 VTEIQKQTIGLALQ-----GKDVLGAAKTGSGKTLA 78 (236)
T ss_dssp CCHHHHHHHHHHHT-----TCCEEEECCTTSCHHHH
T ss_pred CCHHHHHHHHHHhC-----CCCEEEEeCCCCcHHHH
Confidence 36667666666554 35799999999999975
No 149
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.92 E-value=0.0075 Score=59.10 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=28.1
Q ss_pred HHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 68 LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 68 ~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..|..++.....+...|+||||||||||.++.+++..+.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 335555544212233599999999999999999999765
No 150
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.91 E-value=0.0051 Score=55.28 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
+.+|+|.|++|+||||+.+.+.+.++.+++
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999999999999999986654
No 151
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.91 E-value=0.0058 Score=55.75 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
+.|+|.|+||+||||+.+.+.+.++.+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 46899999999999999999999986543
No 152
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.85 E-value=0.0047 Score=55.20 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=22.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.|+|.|++|+||||+++.+ +.++.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~ 28 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKV 28 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcE
Confidence 5789999999999999999 8877553
No 153
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.82 E-value=0.0053 Score=55.63 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=24.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
..|+|.|++|+||||+.+.+.+.++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999998754
No 154
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.79 E-value=0.0082 Score=57.87 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=24.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
..|+|.|+||+||||+++.+.+.++..++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 35899999999999999999999875433
No 155
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.77 E-value=0.15 Score=47.94 Aligned_cols=33 Identities=24% Similarity=0.122 Sum_probs=24.7
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHH
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII 98 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv 98 (537)
--|.-|...+..++. +.++++.+|+|+|||.+.
T Consensus 42 ~~~~~Q~~~i~~~~~-----~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ-----GIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp SCCHHHHHHHHHHHT-----TCCEEEECCTTSCHHHHH
T ss_pred CCCHHHHHHHHHHhC-----CCCEEEECCCCChHHHHH
Confidence 456777777766654 357999999999999653
No 156
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.70 E-value=0.0072 Score=54.40 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=25.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
..+.|.|++|+||||+.+.+...++. .+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~--~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM--EFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC--EEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC--CEEec
Confidence 46899999999999999999998874 45553
No 157
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.64 E-value=0.17 Score=48.41 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi 97 (537)
-|.-|...+..++.. .++++.+|+|+|||.+
T Consensus 46 ~~~~Q~~~i~~i~~~-----~~~l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 46 PTPIQKNAIPAILEH-----RDIMACAQTGSGKTAA 76 (253)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHH
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCCChHHHH
Confidence 467777777776643 5799999999999964
No 158
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.63 E-value=0.0069 Score=55.46 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=28.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
+..+.|.||+|+||||+++.+...++...++++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 4468999999999999999999886666777764
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.61 E-value=0.0061 Score=55.94 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=25.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh-cCCCeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRH-LSRPFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~-l~~~~~~inc 114 (537)
+..|+|.|++|+||||+.+.+.+. ++ +.++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG--FQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeH
Confidence 346999999999999999999998 55 444554
No 160
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.59 E-value=0.008 Score=54.01 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
..|+|.|++|+||||+++.+.+.++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 468999999999999999999998754
No 161
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.58 E-value=0.0094 Score=56.03 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi-v~~vl~~l 105 (537)
-|.-|...+..++.. .++++.+|+|+|||.+ +..+++.+
T Consensus 27 ~~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 27 PTEIQERIIPGALRG-----ESMVGQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp CCHHHHHHHHHHHHT-----CCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHH
Confidence 477787777766643 5799999999999976 44455554
No 162
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.57 E-value=0.0074 Score=55.24 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|+|.|+||+||||+++.+.+.++..++
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i 34 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPLL 34 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEe
Confidence 4889999999999999999999875543
No 163
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.57 E-value=0.13 Score=50.74 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
-|..|...+..++. +.+++|.+|+|+|||.+....+-+.+.+.+++- ..+.|.+.+.+.+.
T Consensus 17 l~~~Q~~~i~~i~~-----~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~-----P~~~L~~q~~~~~~ 77 (337)
T 2z0m_A 17 FTEVQSKTIPLMLQ-----GKNVVVRAKTGSGKTAAYAIPILELGMKSLVVT-----PTRELTRQVASHIR 77 (337)
T ss_dssp CCHHHHHHHHHHHT-----TCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEC-----SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc-----CCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEe-----CCHHHHHHHHHHHH
Confidence 36677777766664 357999999999999876666655555555553 12344444544443
No 164
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.55 E-value=0.065 Score=54.87 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=28.8
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi-v~~vl~~l 105 (537)
.-|.-|...+..++.. ..++|.+|+|+|||.+ +..+++.+
T Consensus 62 ~~~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKG-----YDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHhHHHhCC-----CCEEEECCCCCcccHHHHHHHHHHH
Confidence 4567777777666643 4699999999999976 45555554
No 165
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.53 E-value=0.0072 Score=55.47 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=24.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
+..|+|.|++|+||||+++.+.+.++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4568999999999999999999998754
No 166
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.51 E-value=0.036 Score=55.56 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=25.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
.++|.||+|+|||+++..+++.++. .+|||.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~--~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNG--EVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTE--EEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcc--ceeecC
Confidence 4789999999999999999998863 455553
No 167
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.50 E-value=0.0091 Score=56.02 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|+|.|+||+||||+++.+.+.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3789999999999999999999875544
No 168
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.47 E-value=0.015 Score=57.86 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=29.4
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCccc
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDT 237 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~~ 237 (537)
..-+|||||+|++.+.. .....+.++....+ ++..+|+.|.+.++.
T Consensus 235 ~l~~lVlDEad~l~~~~---~~~~~~~~i~~~~~-~~~q~i~~SAT~~~~ 280 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQ---GHQDQSIRIQRMLP-RNCQMLLFSATFEDS 280 (300)
T ss_dssp GCSEEEETTHHHHHHST---THHHHHHHHHTTSC-TTCEEEEEESCCCHH
T ss_pred hceEEEEeCHHHHhhcc---CcHHHHHHHHHhCC-CCCEEEEEeccCCHH
Confidence 34588999999997521 23334445555543 467888888887643
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.47 E-value=0.013 Score=64.23 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=40.4
Q ss_pred hhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 57 ~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.+.++|.+..++.+...+.. +.+++|+||+|||||++++.+...+..
T Consensus 40 l~~i~G~~~~l~~l~~~i~~----g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQ----KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cceEECchhhHhhccccccC----CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 35688999888888888776 568999999999999999999998863
No 170
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.46 E-value=0.0092 Score=55.92 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=24.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|+|.|+||+||||+++.+.+.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 3789999999999999999999875544
No 171
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.46 E-value=0.019 Score=52.67 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=25.1
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009352 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l---~~~~~~in 113 (537)
|.|.|++|+||||+++.+.+.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 77766543
No 172
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.45 E-value=0.029 Score=59.12 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=41.8
Q ss_pred HHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
.|-.+++ ...++..++|.|+||+|||+++..++.+. +.+++|+++-+ +...+..+++...
T Consensus 186 ~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm--s~~ql~~R~~~~~ 248 (444)
T 3bgw_A 186 ELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM--GKKENIKRLIVTA 248 (444)
T ss_dssp HHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS--CTTHHHHHHHHHH
T ss_pred HHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC--CHHHHHHHHHHHH
Confidence 3444454 34455669999999999999998888654 45788887653 5556666666544
No 173
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.44 E-value=0.0077 Score=54.68 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=21.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
..|+|.|++|+||||+++.+.+.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 35889999999999999999999987654
No 174
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.42 E-value=0.025 Score=69.42 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=38.0
Q ss_pred HHHHHHc-ccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCH
Q 009352 69 ELLRLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSP 120 (537)
Q Consensus 69 ~L~~ll~-~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~s~ 120 (537)
.|-.+++ ....++..+.|+|+||+|||+++..++.+.. .+++|++..+...+
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~ 425 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 425 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH
Confidence 3444465 3334455689999999999999999987643 58999988765553
No 175
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.41 E-value=0.042 Score=54.94 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=23.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.++|.||+|+|||+++..+++.++..++
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 4789999999999999999999874433
No 176
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.41 E-value=0.0086 Score=54.57 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.|+|.|++|+||||+++.+.+.++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998874
No 177
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.40 E-value=0.01 Score=55.05 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=24.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|+|.|+||+||||+++.+.+.++.+++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4889999999999999999999886543
No 178
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.38 E-value=0.014 Score=70.66 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s 119 (537)
.++..++|+|+||+|||+++..++.+. +.+++|++..+...
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ 773 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 773 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 345568999999999999999998764 34789998876544
No 179
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.36 E-value=0.011 Score=52.84 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|+|.|++|+||||+++.+.+.++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4789999999999999999999885543
No 180
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.36 E-value=0.0072 Score=55.13 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..|+|.|++|+||||+++.+.+.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 181
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.34 E-value=0.049 Score=51.92 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=29.2
Q ss_pred EEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCcc
Q 009352 189 MIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPD 236 (537)
Q Consensus 189 ~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~~ 236 (537)
.-+||+||+|.+.++.. ......+..+......++..+++.|.+.++
T Consensus 176 ~~~lViDEah~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGK-TGFRDQLASIFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp CCEEEESSHHHHHHHC---CHHHHHHHHHHHCCCTTCEEEEEESSCCH
T ss_pred CcEEEEeChHHhccccc-ccHHHHHHHHHHhcCCCCcEEEEEeccCCH
Confidence 45789999999976421 244555555543332346788888887663
No 182
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.33 E-value=0.0095 Score=54.43 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
.|+|.|++|+||||+++.+.+.++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 30 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYT 30 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 48899999999999999999998754
No 183
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.33 E-value=0.01 Score=55.97 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
+..|+|.|+||+||||+++.+.+.++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 3468999999999999999999998753
No 184
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.31 E-value=0.012 Score=54.56 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=28.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s 119 (537)
..|+|.|++|+||||+++.+.+.++. .++++.....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~--~~i~~d~~~~ 54 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGY--PFIEGDALHP 54 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTC--CEEEGGGGCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC--EEEeCCcCcc
Confidence 35899999999999999999999874 4556555443
No 185
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.31 E-value=0.021 Score=62.92 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
-+.|...+...+.. +..+|+||||||||+++..++..+
T Consensus 182 n~~Q~~av~~~l~~-----~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR-----PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CHHHHHHHHHHHTC-----SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC-----CCeEEECCCCCCHHHHHHHHHHHH
Confidence 46777777777642 468999999999999988887765
No 186
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.30 E-value=0.025 Score=51.55 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=25.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYT 112 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~i 112 (537)
.|.|.|++|+||||+++.+.+.+ +.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999999999999988 6665544
No 187
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.28 E-value=0.0083 Score=54.13 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=24.2
Q ss_pred CeEEECCCCCCHHHHHHHHHH-hcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFR-HLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~-~l~~~~~~inc 114 (537)
.|+|.|+||+||||+++.+.+ .+ .+.+++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~--~~~~i~~ 34 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNP--GFYNINR 34 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST--TEEEECH
T ss_pred EEEEecCCCCCHHHHHHHHHhhcC--CcEEecH
Confidence 478999999999999999998 34 4556653
No 188
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.25 E-value=0.024 Score=54.79 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=29.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
.++|.|+||+||||+++.+.+.++..+++++....
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 48899999999999999999998766777776543
No 189
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.23 E-value=0.034 Score=59.59 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=47.0
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc-cccccCCCCCCCceeecCCCCHHHHHHHHHh
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP-DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~-~~f~~r~~~~~p~~I~FppYt~~el~~IL~~ 266 (537)
..++||+||+..+... .+.++...|.+|...-.-..+.+|+.++.+. +.+...+....+..|-|.--++.+...|+..
T Consensus 297 P~ivlvIDE~~~ll~~-~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp CEEEEEEETHHHHHHH-HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred CcEEEEEeCHHHHHhh-hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 3479999999877631 1123334444443332223689998888764 2221111112346889999999999999953
No 190
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.18 E-value=0.076 Score=53.87 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi-v~~vl~~l 105 (537)
.-|..|...+..++.. ..++|.+|+|+|||.+ +..+++.+
T Consensus 43 ~~~~~Q~~~i~~i~~~-----~~~lv~~~TGsGKT~~~~~~~~~~l 83 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEG-----HDVLAQAQSGTGKTGTFSIAALQRI 83 (394)
T ss_dssp SCCHHHHHHHHHHHHT-----CCEEECCCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHh
Confidence 4567777777776653 4799999999999976 44555544
No 191
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.15 E-value=0.013 Score=56.82 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=26.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~in 113 (537)
.++|.||+|+||||+++.+++.++..++.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 4789999999999999999999986655443
No 192
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.11 E-value=0.011 Score=54.37 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
..|+|.|++|+||||+++.+.+.++. .++++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~--~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGF--THLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTC--EEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC--eEEcH
Confidence 45899999999999999999999873 44443
No 193
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.08 E-value=0.013 Score=54.37 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+|.|++|+||||+++.+.+.++. .++++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~--~~i~~ 46 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSF--VHLSA 46 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC--EEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc--eEEeH
Confidence 4889999999999999999999874 44443
No 194
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.07 E-value=0.011 Score=53.79 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+|.|++|+||||+++.+.+.++. .++++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~--~~i~~ 37 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGW--VHLSA 37 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--eEeeH
Confidence 4889999999999999999998874 44443
No 195
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.05 E-value=0.012 Score=55.77 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=24.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
+..|+|.|++|+||||+++.+.+.++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 3468999999999999999999998744
No 196
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.04 E-value=0.013 Score=55.63 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
+.|+|.||||+||+|.++.+.+.++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 347899999999999999999998754
No 197
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.04 E-value=0.015 Score=61.58 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.2
Q ss_pred HHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..+...+.. +.++++|.|++|||||+++..++..+.
T Consensus 34 v~~~~~~i~~---~~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 34 FNIVMKAIKE---KKHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHS---SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3444444443 234899999999999999999998763
No 198
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.03 E-value=0.023 Score=58.62 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
++....+..-+.-...++..+.|+||+|+||||+++.+...++..
T Consensus 152 ~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 152 DSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp HHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred hHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 333334444443333445578999999999999999999877643
No 199
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.02 E-value=0.013 Score=55.20 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=23.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.|+|.||||+||+|.++.+.+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ 28 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH 28 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 378999999999999999999987543
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.01 E-value=0.012 Score=55.51 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=24.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
+..|+|.|++|+||||+++.+.+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999999874
No 201
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.99 E-value=0.081 Score=49.30 Aligned_cols=136 Identities=10% Similarity=0.053 Sum_probs=66.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHH-h--cCCCeEEEeccc---cCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFR-H--LSRPFVYTSCLS---CYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~-~--l~~~~~~inc~~---~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (537)
...|+||+++|.||||.+-.+.- . .+.++.++.... .+....+++.+ .+ .+.... .|+... .....+-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L--~v-~~~~~g-~gf~~~--~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH--GV-EFQVMA-TGFTWE--TQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG--TC-EEEECC-TTCCCC--GGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC--Cc-EEEEcc-cccccC--CCCcHHH
Confidence 45799999999999988776653 3 346777775433 22334444443 11 111111 122110 0000000
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCC
Q 009352 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (537)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~ 234 (537)
....+..++...+.+. .++.=+|||||+-.....+- --...++.+...- -.+..||+.++..
T Consensus 102 ~~~a~~~l~~a~~~l~---------------~~~yDlvILDEi~~al~~g~--l~~~ev~~~l~~R-p~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLA---------------DPLLDMVVLDELTYMVAYDY--LPLEEVISALNAR-PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTT---------------CTTCSEEEEETHHHHHHTTS--SCHHHHHHHHHTS-CTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHh---------------cCCCCEEEEeCCCccccCCC--CCHHHHHHHHHhC-cCCCEEEEECCCC
Confidence 1112233333322221 23345889999965433220 0012333443332 2568999999998
Q ss_pred cccccc
Q 009352 235 PDTYHS 240 (537)
Q Consensus 235 ~~~f~~ 240 (537)
|+.+..
T Consensus 164 p~~l~e 169 (196)
T 1g5t_A 164 HRDILD 169 (196)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Confidence 866643
No 202
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.97 E-value=0.015 Score=55.49 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=24.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
..|+|.|++|+||||+++.+.+.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 458999999999999999999998743
No 203
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.97 E-value=0.022 Score=53.30 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccc
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLS 116 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~ 116 (537)
++-+++|...+.....++..+.|.||+|+||||+++.+...+. ....+|....
T Consensus 5 ~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 3455666666654322333578999999999999999998875 2456665433
No 204
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.96 E-value=0.016 Score=53.90 Aligned_cols=27 Identities=33% Similarity=0.709 Sum_probs=24.0
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.+..++|.||+|+||||+++.+.+.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 355789999999999999999999885
No 205
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.94 E-value=0.015 Score=54.55 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=24.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.|+|.|++|+||||+++.+.+.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i 29 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4789999999999999999999875543
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.91 E-value=0.02 Score=51.93 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=28.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc 114 (537)
..+.|.|++|+||||+++.+.+.+ +.+++.++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 358899999999999999999887 777777763
No 207
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.91 E-value=0.3 Score=51.24 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=37.2
Q ss_pred HHHHHHHHcccCC-----CCC-CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009352 67 ILELLRLLGTLNS-----SMP-PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (537)
Q Consensus 67 i~~L~~ll~~~~~-----~~~-~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s 119 (537)
.++|..++++... +.| .++|.|++|+||||++..++..+ +.+++.+.|.....
T Consensus 80 ~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 80 YEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp HHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred HHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 3556666664211 112 37899999999999999998765 46788888876654
No 208
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.90 E-value=0.019 Score=55.85 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEec
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSC 114 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc 114 (537)
..|+|.|+||+||||+++.+.+. ++..+++++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 45899999999999999999987 5666665553
No 209
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.85 E-value=0.01 Score=54.03 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=25.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~in 113 (537)
.|+|.|++|+||||+++.+.+.++ ..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 588999999999999999999876 2355553
No 210
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.82 E-value=0.015 Score=54.77 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=25.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
+..|+|.|+||+||||+++.+.+.++.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~ 33 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAH 33 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceE
Confidence 34689999999999999999999997543
No 211
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.79 E-value=0.022 Score=52.79 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=26.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~in 113 (537)
+..+.|.|++|+||||+++.+...+ +...++++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4568899999999999999999888 43334665
No 212
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=94.78 E-value=0.1 Score=57.07 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHH
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII 99 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~ 99 (537)
|.-|..-+..++. +..+++.+|+|+|||.+..
T Consensus 46 rp~Q~~~i~~il~-----g~d~lv~~pTGsGKTl~~~ 77 (591)
T 2v1x_A 46 RPLQLETINVTMA-----GKEVFLVMPTGGGKSLCYQ 77 (591)
T ss_dssp CTTHHHHHHHHHT-----TCCEEEECCTTSCTTHHHH
T ss_pred CHHHHHHHHHHHc-----CCCEEEEECCCChHHHHHH
Confidence 5566666666664 3579999999999997544
No 213
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.77 E-value=0.19 Score=51.13 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHH-HHHHhc
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII-QVFRHL 105 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~-~vl~~l 105 (537)
-|..|...+..++.. ..++|.+|+|+|||.+.. .++..+
T Consensus 44 ~~~~Q~~~i~~i~~~-----~~~li~a~TGsGKT~~~~~~~~~~~ 83 (400)
T 1s2m_A 44 PSPIQEEAIPVAITG-----RDILARAKNGTGKTAAFVIPTLEKV 83 (400)
T ss_dssp CCHHHHHHHHHHHHT-----CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhcC-----CCEEEECCCCcHHHHHHHHHHHHHH
Confidence 577887777776643 469999999999997543 344443
No 214
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.77 E-value=0.015 Score=52.45 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=29.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s 119 (537)
+..+.|.|++|+||||+++.+...++ .++++......
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~d~~~~ 44 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHP 44 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC--cEEEeCccccc
Confidence 34589999999999999999998875 55677655443
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.76 E-value=0.27 Score=51.49 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=35.1
Q ss_pred HHHHHHHcccCC------CCC-CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009352 68 LELLRLLGTLNS------SMP-PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (537)
Q Consensus 68 ~~L~~ll~~~~~------~~~-~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~ 117 (537)
++|..++++... +.+ .+.+.|++|+||||++..++..+ +.++..+.|...
T Consensus 77 ~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 77 DELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp HHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 556667765311 112 37899999999999999998665 457777777654
No 216
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.75 E-value=0.017 Score=53.16 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=23.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.|+|.|++|+||||+++.+.+.++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcE
Confidence 478999999999999999999998543
No 217
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.75 E-value=0.019 Score=53.33 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=29.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s 119 (537)
+..+.|.|++|+||||+++.+...++ .++++......
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~~~ 65 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAFHS 65 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGGSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC--CeEEccccccc
Confidence 44688999999999999999999885 56677665543
No 218
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.75 E-value=0.069 Score=54.09 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHH-HHHHhc
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII-QVFRHL 105 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~-~vl~~l 105 (537)
.-|.-|...+..++.. ...+++|.+|+|+|||.+.. .++..+
T Consensus 27 ~~~~~Q~~~i~~~~~~---~~~~~lv~a~TGsGKT~~~~~~~~~~~ 69 (395)
T 3pey_A 27 KPSKIQERALPLLLHN---PPRNMIAQSQSGTGKTAAFSLTMLTRV 69 (395)
T ss_dssp SCCHHHHHHHHHHHCS---SCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 4567777777777654 23689999999999997544 444544
No 219
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.75 E-value=0.02 Score=52.84 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=27.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEe
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTS 113 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l-~~~~~~in 113 (537)
+..|+|.|++|+||||+++.+.+.+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3458999999999999999999998 35555554
No 220
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.71 E-value=0.018 Score=53.88 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
+..+.|.||+|+||||+++.++..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 445889999999999999999988753
No 221
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.65 E-value=0.02 Score=57.66 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=26.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.++|.||+|+|||+++..+.+.++..++-++.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 58899999999999999999998754444433
No 222
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.57 E-value=0.019 Score=54.33 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=24.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+|.|++|+||||+++.+.+.++. .+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~--~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL--AHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC--EEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--eEEch
Confidence 3789999999999999999999874 34443
No 223
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.56 E-value=0.019 Score=53.20 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=23.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
.|+|.|++|+||||+++.+.+.++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 58899999999999999999998753
No 224
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.50 E-value=0.024 Score=51.77 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..+.|.||+|+||||+++.++..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998764
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.47 E-value=0.022 Score=52.79 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=23.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~ 111 (537)
.|.|.|++|+||||+++.+.+ ++.++++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 478999999999999999998 7654443
No 226
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.43 E-value=0.048 Score=61.77 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
-+.|...+...+.. +..+|+||||||||+++..++..+
T Consensus 358 n~~Q~~Av~~~l~~-----~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR-----PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CHHHHHHHHHHHTS-----SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccC-----CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 46777777776642 468999999999999988888764
No 227
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.42 E-value=0.028 Score=61.25 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+.|...+...+. .+.++|.|+||||||+++..++..+
T Consensus 192 ~~Q~~Av~~~~~-----~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 192 EEQASVLDQLAG-----HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp HHHHHHHHHHTT-----CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 466666666553 3578999999999999999998765
No 228
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.41 E-value=0.21 Score=53.77 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi 97 (537)
-|.-|...+-.++.. .+..+++.+|+|+|||.+
T Consensus 95 ~~~~Q~~~i~~~l~~---~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 95 LTPVQQKTIKPILSS---EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp CCHHHHHHHHHHHSS---SSEEEEEECCTTSCHHHH
T ss_pred CCHHHHHHHHHHhcC---CCCeEEEECCCCCCccHH
Confidence 577787777777632 245799999999999964
No 229
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.40 E-value=0.12 Score=62.83 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=70.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCccccCCCchhHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~---l~~~~~~inc~~~~s~~~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (537)
++.+.||||+|||||+++.+++.+ .+...+||+......+- | +.+++-...+ . .-.++++..+.+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~--~---~~~~Gv~~~~----l-~~~~p~~~e~~l~~ 1500 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--Y---ARKLGVDIDN----L-LCSQPDTGEQALEI 1500 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH--H---HHHTTCCGGG----C-EEECCSSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHH--H---HHHcCCCHHH----e-EEeCCCcHHHHHHH
Confidence 455899999999999999999854 45689999987665543 2 4444322111 0 01234444443332
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccCCcEEEEEEeCCCcccccCCC------------CC-hHHHHHhhhhhcCCCc
Q 009352 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS------------SS-ILPFLFGLSDILKMPE 224 (537)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~g~~~~~~~~~~~vlVLDe~D~L~~~d~~------------~~-lL~~L~rl~e~~~~~~ 224 (537)
...++ . .+.+-+||+|.+..|...-.. .. +-.+|.+|.......+
T Consensus 1501 ~~~~~----~------------------s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~ 1558 (1706)
T 3cmw_A 1501 CDALA----R------------------SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1558 (1706)
T ss_dssp HHHHH----H------------------HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----H------------------cCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 22222 1 224558889999999753100 01 1244666655544457
Q ss_pred EEEEEEeCC
Q 009352 225 VGMIFISST 233 (537)
Q Consensus 225 l~vI~Is~~ 233 (537)
+++|||.+.
T Consensus 1559 ~~~i~~~~~ 1567 (1706)
T 3cmw_A 1559 TLLIFINQI 1567 (1706)
T ss_dssp CEEEEEECB
T ss_pred cEEEEeecc
Confidence 899998765
No 230
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.039 Score=62.52 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+.|...+...+. .+..+|.||||||||+++..++..+
T Consensus 363 ~~Q~~Av~~~l~-----~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 363 SSQSNAVSHVLQ-----RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp HHHHHHHHHHTT-----CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 677777776654 2468999999999998888777654
No 231
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.39 E-value=0.025 Score=53.23 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=23.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
.|.|.|++|+||||+++.+.+.++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58899999999999999999988743
No 232
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.29 E-value=0.03 Score=54.03 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=29.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC--------eEEEeccccC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRP--------FVYTSCLSCY 118 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~--------~~~inc~~~~ 118 (537)
.|.|.|++|+||||+++.+.+.++.+ ++++++...+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 47899999999999999999988754 4467776655
No 233
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.22 E-value=0.03 Score=54.39 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
+..|+|.|++|+||||+.+.+.+.++..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 568999999999999999999999985433
No 234
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.15 E-value=0.69 Score=48.07 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=27.4
Q ss_pred cEEEEEEeCCCcccccCCCCChHHHHHhhhhhcC-CCcEEEEEEeCCCc
Q 009352 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILK-MPEVGMIFISSTSP 235 (537)
Q Consensus 188 ~~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~-~~~l~vI~Is~~~~ 235 (537)
..-+|||||+|++.++. ....+.++.+... .++..+|+.|.+.+
T Consensus 203 ~~~~lVlDEah~~~~~g----f~~~~~~i~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMG----FSEDMRRIMTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp TCCEEEEETHHHHTSTT----THHHHHHHHHCTTSCSSCEEEEEESCCC
T ss_pred cCCeEEEccHhhhhccC----cHHHHHHHHHhcCCCCCceEEEEeccCC
Confidence 34578999999997632 3344444444321 24677888887765
No 235
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.11 E-value=0.034 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
.|.|.|++|+||||+.+.+.+.++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 57899999999999999999998844
No 236
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.10 E-value=0.032 Score=51.79 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=21.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.+.|.|++|+||||+.+.+.. ++.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~ 29 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPL 29 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcc
Confidence 478999999999999999977 66443
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.02 E-value=0.033 Score=52.04 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..+.|.||+|+||||+++.+++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998765
No 238
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.00 E-value=0.11 Score=52.89 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHH-HHHHHhcC
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHLS 106 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv-~~vl~~l~ 106 (537)
.-|.-|...+..++.. ...+++|.+|+|+|||.+. ..+++.+.
T Consensus 47 ~~~~~Q~~~i~~~~~~---~~~~~lv~apTGsGKT~~~~~~~~~~~~ 90 (412)
T 3fht_A 47 RPSKIQENALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQVE 90 (412)
T ss_dssp SCCHHHHHHHHHHHSS---SCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHhcC---CCCeEEEECCCCchHHHHHHHHHHHHhh
Confidence 3477787777777753 2467999999999999764 45555543
No 239
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.98 E-value=0.51 Score=47.62 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHH-HHHHHhc
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL 105 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv-~~vl~~l 105 (537)
-|.-|...+..++. +.+++|.+|+|+|||.+. ..++..+
T Consensus 31 ~~~~Q~~~i~~~~~-----~~~~lv~a~TGsGKT~~~~~~~~~~l 70 (391)
T 1xti_A 31 PSEVQHECIPQAIL-----GMDVLCQAKSGMGKTAVFVLATLQQL 70 (391)
T ss_dssp CCHHHHHHHHHHTT-----TCCEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhc-----CCcEEEECCCCCcHHHHHHHHHHHhh
Confidence 57777777766654 357999999999999664 3444443
No 240
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.97 E-value=0.28 Score=52.60 Aligned_cols=60 Identities=20% Similarity=0.027 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHh
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLL 132 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s~~~l~~~Il~~L~ 132 (537)
|..|.+-+..++.. ..++|.+|+|+|||.+....+-..+...++|. ..+.|.+..+..+.
T Consensus 27 r~~Q~~~i~~il~g-----~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~-----P~~aL~~q~~~~l~ 86 (523)
T 1oyw_A 27 RPGQEEIIDTVLSG-----RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS-----PLISLMKDQVDQLQ 86 (523)
T ss_dssp CTTHHHHHHHHHTT-----CCEEEECSCHHHHHHHHHHHHHHSSSEEEEEC-----SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC-----CCEEEECCCCcHHHHHHHHHHHHhCCCEEEEC-----ChHHHHHHHHHHHH
Confidence 56677767666643 57999999999999744332222233344442 12445555555554
No 241
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.97 E-value=0.027 Score=57.01 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=26.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
+.|+|.||+|+|||++...+++.++.. +||+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~e--iIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLE--VINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEE--EEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCc--EEccc
Confidence 358999999999999999999998744 45543
No 242
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.96 E-value=0.071 Score=57.21 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=40.1
Q ss_pred ccCCCCChhHHhhcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEE
Q 009352 46 FGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYT 112 (537)
Q Consensus 46 f~~~~~~~~~l~~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~i 112 (537)
|...++++.++.+.=..-...+..|.-.+.. +.++.|.||+|+||||+++.++..+.. ..+.|
T Consensus 229 ~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~----g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 229 FTIEPLTPIDLIEKGTVPSGVLAYLWLAIEH----KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp CCCCCCCHHHHHHTTSSCHHHHHHHHHHHHT----TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred cCCCCCChhhHHhcCCCCHHHHHHHHHHHhC----CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 4445556665553211233444555444443 557999999999999999999987753 34444
No 243
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.89 E-value=0.033 Score=51.43 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+..+.|.||+|+||||+++.+...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4468899999999999999999876
No 244
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.88 E-value=0.034 Score=51.68 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=26.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~ 116 (537)
.|.|.|++|+||||+.+.+.+.++. .++++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~--~vid~D~ 45 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGA--HVVNVDR 45 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC--EEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC--EEEECcH
Confidence 4789999999999999999998764 4556543
No 245
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.88 E-value=0.58 Score=48.17 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=42.3
Q ss_pred hcCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 58 ~~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
..+.-|..|...+..++.. +++|.+|+|+|||.++-.++..+ +.++++| |. .+.|.......+..
T Consensus 6 ~~~~l~~~Q~~~i~~~~~~------~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv-~P----~~~L~~q~~~~~~~ 74 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKCKET------NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLML-AP----TKPLVLQHAESFRR 74 (494)
T ss_dssp HHHCCCHHHHHHHHHGGGS------CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEE-CS----SHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHhhC------CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEE-EC----CHHHHHHHHHHHHH
Confidence 3456678888888776643 89999999999998877776554 3444444 22 13444445555443
No 246
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.87 E-value=0.037 Score=53.06 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=24.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
..+.|.||+|+||||+++.+.+.++...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4589999999999999999999987543
No 247
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.83 E-value=0.066 Score=59.70 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHH-HHHHhc---CCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII-QVFRHL---SRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~-~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
-+..|.+.+...+.. ..+++|.||+|+|||+++- .+++.+ +.+.+|+- -.+.|-..+...+
T Consensus 31 l~~~Q~~~i~~~~~~----~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~-----P~r~La~q~~~~~ 95 (715)
T 2va8_A 31 LNPPQTEAVKKGLLE----GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVT-----PLRALTNEKYLTF 95 (715)
T ss_dssp CCHHHHHHHHTTTTT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEEC-----SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcC----CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEe-----CcHHHHHHHHHHH
Confidence 355666655543322 5689999999999998874 344432 33444442 1234444555554
No 248
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.82 E-value=0.023 Score=52.72 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
..|+|.|++|+||||+++.+.+.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999988763
No 249
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.81 E-value=0.088 Score=53.60 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=35.5
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~ 115 (537)
+..++...+.+.....+.|.|.|+||+||||++..++..+ +.+++.+.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 4455555554432334458899999999999999998765 5677777765
No 250
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.81 E-value=0.063 Score=55.99 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=27.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~s 119 (537)
.|+|.|+||+||||+++.+++.++ +.+|+......
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~ 294 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTLGS 294 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGT--CEECCGGGSCS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--cEEEccchHHH
Confidence 378999999999999999999885 55666555433
No 251
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.79 E-value=0.19 Score=56.68 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
|...+...+.. ...++|.||+|+|||+++..++-.
T Consensus 98 q~~~i~~~l~~----~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 98 QRDEFLKLYQN----NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp GHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 44455555544 457999999999999977776543
No 252
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.76 E-value=0.028 Score=52.24 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..|+|.|++|+||||+++.+.+.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999875
No 253
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.74 E-value=0.076 Score=50.32 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=32.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHh----cCCCeEEEeccccCCHHHHHHHH
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRH----LSRPFVYTSCLSCYSPRILFESI 127 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~----l~~~~~~inc~~~~s~~~l~~~I 127 (537)
++..++|+|+||+|||+++..++.+ .+.+++|++..+ ++..+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC--CHHHHHHHH
Confidence 3456899999999999999887643 356788887643 455555443
No 254
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.72 E-value=0.042 Score=53.10 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
+..|.|.||+|+||||+++.+.+.|+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4568899999999999999999999853
No 255
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.69 E-value=0.041 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.688 Sum_probs=21.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.+.|.||+|+||||+++.++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999998764
No 256
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.61 E-value=0.3 Score=56.71 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF 102 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl 102 (537)
-+..|...+..++. +..++|.||+|+|||.+....+
T Consensus 40 l~~~Q~~aI~~il~-----g~~vlv~apTGsGKTlv~~~~i 75 (997)
T 4a4z_A 40 LDTFQKEAVYHLEQ-----GDSVFVAAHTSAGKTVVAEYAI 75 (997)
T ss_dssp CCHHHHHHHHHHHT-----TCEEEEECCTTSCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-----CCCEEEEECCCCcHHHHHHHHH
Confidence 46677777766654 3579999999999997654444
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.61 E-value=0.045 Score=50.42 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..+.|.||+|+||||+++.+...+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44688999999999999999998764
No 258
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.60 E-value=0.042 Score=51.33 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=27.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC----CCeEEEe
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS----RPFVYTS 113 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~----~~~~~in 113 (537)
+..|+|.|++|+||||+++.+.+.++ .++++++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44688999999999999999998765 4577776
No 259
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.55 E-value=0.54 Score=50.87 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi 97 (537)
-|.-|...+-.++.. .+..+++.+|+|+|||.+
T Consensus 44 ~~~~Q~~~i~~il~~---~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 44 LTPVQQKTIKPILSS---EDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp CCHHHHHHHHHHHCS---SSEEEEEECCTTSCHHHH
T ss_pred CCHHHHHHHHHHHcc---CCCeEEEEcCCCcHHHHH
Confidence 577888888777732 245799999999999974
No 260
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.52 E-value=0.032 Score=57.88 Aligned_cols=30 Identities=17% Similarity=0.363 Sum_probs=25.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+|.||+|+|||+++..+++.++.. +|++
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~--iis~ 33 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGE--VINS 33 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEE--EEEC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCe--Eeec
Confidence 47899999999999999999998743 4554
No 261
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.50 E-value=0.044 Score=50.84 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=22.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..+.|.||+|+||||+++.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45789999999999999999998764
No 262
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.48 E-value=0.055 Score=50.23 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=27.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~~ 118 (537)
.+.|.|++|+||||+++.+.+.+. .+.++++....
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~-~~~~i~~D~~~ 57 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLP-NCSVISQDDFF 57 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTST-TEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-CcEEEeCCccc
Confidence 478999999999999999998763 46677766543
No 263
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.47 E-value=0.043 Score=52.65 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.+.|.||+|+||||+.+.+.+.++.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999999874
No 264
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.41 E-value=0.073 Score=54.22 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=30.1
Q ss_pred HHHHHHHHcccCCC--CCCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 67 ILELLRLLGTLNSS--MPPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 67 i~~L~~ll~~~~~~--~~~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.+.+...+.....+ .++++|.|++|+||||+.+.+...++.++
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34444444333332 34599999999999999999999887444
No 265
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.40 E-value=1.2 Score=45.38 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi 97 (537)
.-+.-|...+-.++. +.++++.+|+|+|||.+
T Consensus 37 ~~~~~Q~~~i~~i~~-----~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKE-----KRDLMACAQTGSGKTAA 68 (417)
T ss_dssp SCCHHHHHHHHHHHT-----TCCEEEECCTTSCHHHH
T ss_pred CCCHHHHHHHHHHcc-----CCCEEEEcCCCCHHHHH
Confidence 345566666655553 35899999999999964
No 266
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.37 E-value=0.043 Score=50.24 Aligned_cols=25 Identities=20% Similarity=0.565 Sum_probs=22.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.+.|.||+|+||||+++.++..+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3679999999999999999988763
No 267
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.30 E-value=0.041 Score=50.15 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~in 113 (537)
..|+|.|++|+||||+++.+.+.++ .++.+++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 3588999999999999999998874 3455565
No 268
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.29 E-value=0.053 Score=59.50 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
+.++|+|+||||||+++..++..+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999999888665
No 269
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.29 E-value=0.1 Score=48.48 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=22.7
Q ss_pred CeEEECCCCCCHH-HHHHHHHHhc--CCCeEEEec
Q 009352 83 PLFVYGSASTGKT-SIIIQVFRHL--SRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKT-siv~~vl~~l--~~~~~~inc 114 (537)
-.||||+.|+||| .+++.+-+.. +.++.++..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 4789999999999 5555554432 357777753
No 270
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.25 E-value=0.052 Score=49.83 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=24.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
.|.|.|++|+||||+.+.+.+. + +.++++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g--~~~id~d 39 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-G--YPVLDLD 39 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-T--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-C--CEEEccc
Confidence 4889999999999999999987 5 3445543
No 271
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.22 E-value=0.14 Score=53.88 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHH-HHHHHHhcC
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHLS 106 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsi-v~~vl~~l~ 106 (537)
.-|...+-.++.. ...++++.||+|+|||.+ +..++..+.
T Consensus 117 ~~Q~~ai~~il~~---~~~~~l~~a~TGsGKT~~~~l~il~~l~ 157 (479)
T 3fmp_B 117 KIQENALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (479)
T ss_dssp HHHHHHHHHHTSB---SCCEEEEECCSSSSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcC---CCCcEEEEcCCCCchhHHHHHHHHHHHh
Confidence 3455555555542 246799999999999976 555665553
No 272
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.13 E-value=0.052 Score=49.53 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=24.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.+.|.||+|+||||+++.+...++ ..++++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD-NSAYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS-SEEEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhcccC-CeEEEcc
Confidence 468999999999999999987654 2355553
No 273
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.09 E-value=0.68 Score=48.82 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=32.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC----CCeEEEeccccCC-HHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS----RPFVYTSCLSCYS-PRILFESI 127 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~----~~~~~inc~~~~s-~~~l~~~I 127 (537)
+..+.|.|++|+|||++++.++.... .-.+++.+-+..+ .+.+++.+
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHh
Confidence 34689999999999999998886542 3456666655543 34555544
No 274
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.05 E-value=0.63 Score=49.43 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHH
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF 102 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl 102 (537)
+.-|.-|...+..++.. .+++|.+|+|+|||.+....+
T Consensus 6 ~~~~~~Q~~~i~~~~~~-----~~~l~~~~tGsGKT~~~~~~~ 43 (556)
T 4a2p_A 6 KKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILIC 43 (556)
T ss_dssp --CCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-----CCEEEEcCCCChHHHHHHHHH
Confidence 44466777777776643 579999999999997655444
No 275
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.90 E-value=0.15 Score=56.85 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCCeEEECCCCCCHHHHH-HHHHHhc--CCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSII-IQVFRHL--SRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv-~~vl~~l--~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
..+++|.||+|+|||+++ ..+++.+ +.+.+|+-- .+.|-..++..+
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P-----~r~La~q~~~~~ 88 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP-----LRALAGEKYESF 88 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES-----SHHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC-----cHHHHHHHHHHH
Confidence 468999999999999877 4444443 345565532 234555555555
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.87 E-value=0.17 Score=50.11 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=30.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC-----CeEEE-eccccCCHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR-----PFVYT-SCLSCYSPRILFES 126 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~-----~~~~i-nc~~~~s~~~l~~~ 126 (537)
.|.|.|++|+||||+++.+...++. +.+.+ .....+-+....+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~ 82 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLK 82 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHH
Confidence 3779999999999999999987752 34444 66655544444443
No 277
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.85 E-value=0.073 Score=56.98 Aligned_cols=49 Identities=6% Similarity=-0.031 Sum_probs=37.3
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.+..|.+..+.|.....+..+.+..|+|.|.+|+||||+.+.+.+.|+.
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3566666667777766443334457999999999999999999999974
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.82 E-value=0.063 Score=50.25 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=23.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|.|.|++|+||||+++.+.+ ++. .++++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~--~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGI--NVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTC--EEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCC--EEEEc
Confidence 478999999999999999977 653 45554
No 279
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.80 E-value=0.06 Score=54.59 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=27.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
.|+|.||+|+|||+++..+.+.++ ..+|++...
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~ 41 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM 41 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence 578999999999999999999987 455665543
No 280
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.77 E-value=0.069 Score=49.09 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=28.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~ 117 (537)
++|+|++|+|||+.+..++.. +.+.+|+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 778999876543
No 281
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.76 E-value=0.069 Score=50.60 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||+|+||||+++.++..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345688999999999999999998765
No 282
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.42 Score=56.03 Aligned_cols=38 Identities=16% Similarity=0.034 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHH
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFR 103 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~ 103 (537)
.-+.-|...+..++. +..++|.||+|+|||.+....+-
T Consensus 184 ~ltp~Q~~AI~~i~~-----g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDR-----GESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp CCCHHHHHHHHHHTT-----TCCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-----CCCEEEECCCCCChHHHHHHHHH
Confidence 445677766666533 46899999999999977655443
No 283
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.73 E-value=0.07 Score=49.55 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=26.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
..+.|.||+|+||||+++.+...++..+.++...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 3478999999999999999998876335666544
No 284
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.66 E-value=0.076 Score=50.54 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
..|.|.|++|+||||+.+.+.+.++.+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 458899999999999999999988743
No 285
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.64 E-value=0.072 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRP 108 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~ 108 (537)
.|.|.|++|+|||++.+.+.+.++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 58999999999999999999988743
No 286
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.63 E-value=0.048 Score=54.04 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=27.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
.|.|.|++|+||||+++.+.+.++ ..+.+|++...+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 478999999999999999998765 457788877766
No 287
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.42 E-value=0.32 Score=47.75 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=34.5
Q ss_pred CCCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHH
Q 009352 78 NSSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILN 129 (537)
Q Consensus 78 ~~~~~~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s~~~l~~~Il~ 129 (537)
..++..+.|.|++|+||||+++.++..+ +.+++|++... +...+..++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC--CHHHHHHHHHH
Confidence 3445678999999999999999988654 23677776533 44455544443
No 288
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.36 E-value=0.077 Score=48.27 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=27.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecc
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCL 115 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~ 115 (537)
.+.+.|.|++|+||||++..++..+. .++..+.+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 45588999999999999999998763 566666643
No 289
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.36 E-value=0.089 Score=49.05 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=25.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
+.|.|.|++|+|||++.+.+.+.|+.+++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 35889999999999999999999986644
No 290
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.35 E-value=0.087 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.590 Sum_probs=23.0
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
++..+.|.||+|+||||+++.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45578899999999999999999876
No 291
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.31 E-value=0.12 Score=57.77 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHH-HHHHHhc---CCCeEEEe
Q 009352 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL---SRPFVYTS 113 (537)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv-~~vl~~l---~~~~~~in 113 (537)
-+.-|.+-+...+.. ..+++|.||+|+|||.+. ..+++.+ +.+.+|+-
T Consensus 24 l~~~Q~~~i~~~~~~----~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 24 FYPPQAEALKSGILE----GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp CCHHHHHHHTTTGGG----TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCHHHHHHHHHHhcC----CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 345555555442322 468999999999999776 4444332 34555553
No 292
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=92.23 E-value=0.37 Score=50.70 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=31.3
Q ss_pred CCCCeEEECCCCCCHHHH-HHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 80 SMPPLFVYGSASTGKTSI-IIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsi-v~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
....++|.||+|+|||++ +..+++.+ +...+++. -.+.|-..+...+.+
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~-----Ptr~La~Q~~~~l~g 72 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLA-----PTRVVAAEMAEALRG 72 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEE-----CSHHHHHHHHHHTTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEC-----chHHHHHHHHHHhcC
Confidence 456899999999999976 56666543 33445443 224555666666643
No 293
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.10 E-value=0.074 Score=52.38 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=24.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc 114 (537)
.|+|.|+||+||||+++.+.+.+. .+.+++.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~-~~~~i~~ 34 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNP-GFYNINR 34 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST-TEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC-CcEEecc
Confidence 478999999999999999998642 3555554
No 294
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.05 E-value=0.087 Score=48.10 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=26.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEec
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSC 114 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc 114 (537)
.+.+.|.|++|+||||+++.++..+. .++..++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 34588999999999999999998753 45555554
No 295
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.99 E-value=0.55 Score=48.95 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=27.7
Q ss_pred CCCeEEECCCCCCHHHHH-HHHHHh---cCCCeEEEeccccCCHHHHHHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSII-IQVFRH---LSRPFVYTSCLSCYSPRILFESILNQL 131 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv-~~vl~~---l~~~~~~inc~~~~s~~~l~~~Il~~L 131 (537)
+.+++|.||+|+|||.+. ..+++. -+...+++-- .+.|-+.+...+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P-----t~~La~Q~~~~~ 51 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP-----TRVVASEMYEAL 51 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES-----SHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc-----HHHHHHHHHHHh
Confidence 357999999999999764 555532 2335555532 234444455544
No 296
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.97 E-value=0.061 Score=51.04 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=27.6
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHH--h--cCCCeEEEecc
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFR--H--LSRPFVYTSCL 115 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~--~--l~~~~~~inc~ 115 (537)
.++..+.|.||+|+||||+++.++. . -+...++++..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 3456789999999999999998883 2 23466777653
No 297
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.95 E-value=0.23 Score=52.98 Aligned_cols=43 Identities=9% Similarity=0.184 Sum_probs=27.2
Q ss_pred EEEEEEeCCCcccccCCCCChHHHHHhhhhhcCCCcEEEEEEeCCCc
Q 009352 189 MIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP 235 (537)
Q Consensus 189 ~~vlVLDe~D~L~~~d~~~~lL~~L~rl~e~~~~~~l~vI~Is~~~~ 235 (537)
.-+||+||+|.+.+. ......+.++....+ ++..+|+.|.+++
T Consensus 260 ~~lIIiDEaH~~~~~---~~~~~~~~~i~~~~~-~~~~~i~lSAT~~ 302 (508)
T 3fho_A 260 IKVFVLDEADNMLDQ---QGLGDQSMRIKHLLP-RNTQIVLFSATFS 302 (508)
T ss_dssp CCEEEECCHHHHTTC-----CHHHHHHHHHHSC-TTCEEEEEESCCS
T ss_pred CCEEEEechhhhccc---CCcHHHHHHHHHhCC-cCCeEEEEeCCCC
Confidence 457889999998741 123334444555443 4688888888865
No 298
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.90 E-value=0.12 Score=46.20 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++..+.|.||.|+||||+++.++..+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3455688999999999999999998773
No 299
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=91.69 E-value=1.1 Score=52.17 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh-c--CCCeEEE
Q 009352 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-L--SRPFVYT 112 (537)
Q Consensus 61 ~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~-l--~~~~~~i 112 (537)
.-+.-|...+..++.. .+++|.+|+|+|||.+....+.. + +.+.+|+
T Consensus 86 ~L~~~Q~eai~~l~~g-----~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l 135 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRG-----ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYT 135 (1010)
T ss_dssp CCCHHHHHHHHHHHHT-----CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHHHHHHHHHcC-----CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEE
Confidence 3566777777776543 57999999999999876544432 2 3345554
No 300
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.65 E-value=0.04 Score=51.17 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=21.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.|.|.|++|+||||+++.+.+.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999875
No 301
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.64 E-value=0.14 Score=47.91 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEec
Q 009352 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSC 114 (537)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc 114 (537)
.+++...+...+.. ...+.+.|.|.+|+||||++..++..+.. ....|.+
T Consensus 22 ~~~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~ 73 (226)
T 2hf9_A 22 NKRLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG 73 (226)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred hHHHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence 35556666666543 22345889999999999999999987532 3444443
No 302
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.55 E-value=0.11 Score=48.23 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=23.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||+|+||||+++.+...+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 355688999999999999999998774
No 303
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=91.50 E-value=1.1 Score=50.38 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=29.4
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHh
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.-|.-|...+..++.. .+++|.+|+|+|||.+....+..
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-----~~~ll~~~TGsGKTl~~~~~i~~ 286 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILICEH 286 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC-----CCEEEEeCCCChHHHHHHHHHHH
Confidence 445678888877777643 57999999999999765555533
No 304
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.48 E-value=0.093 Score=51.60 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=23.6
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~ 115 (537)
|.|.|++|+||||+++.+. .++. .+|++.
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~--~~id~D 106 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGA--YIIDSD 106 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTC--EEEEHH
T ss_pred EEEECCCCCCHHHHHHHHH-HCCC--cEEehh
Confidence 7899999999999999998 5653 456654
No 305
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.48 E-value=0.2 Score=52.29 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..+...|..++. .++..+.|.||+|+||||+++.++..+.
T Consensus 153 ~~~~~~L~~l~~---~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 153 AHNHDNFRRLIK---RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHHHHHHHT---SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 344445555542 2345689999999999999999998875
No 306
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.44 E-value=0.11 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..|+|.|++|+||||+++.+.+.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999886
No 307
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.27 E-value=0.12 Score=48.00 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEecc
Q 009352 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCL 115 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc~ 115 (537)
++....+...+.. ...+.+.|.|++|+||||++..++..+.. ++..|.+.
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 4455555555533 13456899999999999999999987642 45556543
No 308
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.15 E-value=0.3 Score=48.65 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcccC--C---CCC-CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009352 64 RVQILELLRLLGTLN--S---SMP-PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (537)
Q Consensus 64 e~qi~~L~~ll~~~~--~---~~~-~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~ 117 (537)
+...++|..++++.. . ..+ .+.|.|++|+||||++..++..+ +.++..+.|...
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 344566777776532 1 112 37899999999999999998765 346777776543
No 309
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.13 E-value=0.16 Score=55.26 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC----CCeEEEe
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS----RPFVYTS 113 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~----~~~~~in 113 (537)
..|+|.|++|+||||+++.+.+.|+ .++.+++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 3588999999999999999999886 5666766
No 310
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.08 E-value=0.11 Score=50.67 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=23.1
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.++..+.|.||+|+||||+++.++..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 345578999999999999999999765
No 311
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.07 E-value=0.44 Score=47.79 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=26.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccC
Q 009352 84 LFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCY 118 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~ 118 (537)
+-|.||+|+||||+++.+...++ ..+..+.....+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 67999999999999999988775 245556555444
No 312
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.05 E-value=0.17 Score=50.52 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=25.0
Q ss_pred cCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 77 LNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 77 ~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.+.++..+.|.||+|+||||+++.++..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34456678999999999999999999887
No 313
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.02 E-value=0.16 Score=48.59 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~~ 110 (537)
.+-|.|+||+||||+++.+.+.++.+++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 4679999999999999999999875543
No 314
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.92 E-value=0.32 Score=50.97 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=37.1
Q ss_pred HHHHHHHccc---C--C-C-CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009352 68 LELLRLLGTL---N--S-S-MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (537)
Q Consensus 68 ~~L~~ll~~~---~--~-~-~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~~~~ 118 (537)
++|..+++.. . . . ...|.|.|++|+||||++..++..+. .++.+|+|....
T Consensus 79 ~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp HHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred HHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 5566777653 1 1 1 23588999999999999999987653 578888887543
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.86 E-value=0.086 Score=49.87 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=15.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHH-HhcC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVF-RHLS 106 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl-~~l~ 106 (537)
+..+.|.||+|+||||+++.+. ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4458899999999999999999 7653
No 316
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.70 E-value=0.21 Score=50.37 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=24.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCL 115 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc~ 115 (537)
.+.|.||+|+||||+++.++..+. ..+.++.+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 378999999999999999987653 344444444
No 317
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.64 E-value=0.14 Score=47.05 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=23.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~in 113 (537)
..++++|++|+|||+++..++..+ +.++.++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 347899999999999987666543 34455553
No 318
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.64 E-value=0.4 Score=47.64 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=26.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCY 118 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~ 118 (537)
.+-|.|++|+||||+++.+...++ ..+.+|++....
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 477999999999999999998765 134555544443
No 319
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.60 E-value=0.19 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
..++|.|++|+||||++..++..-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998753
No 320
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.58 E-value=0.11 Score=53.13 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=28.0
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEe
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTS 113 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~in 113 (537)
.++..+.|.||+|+||||+++.++..+.. ..+.++
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 34678999999999999999999987753 345554
No 321
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.56 E-value=0.11 Score=48.46 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=22.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..++|.||+|+|||+++..+++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3489999999999999999998765
No 322
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.56 E-value=0.12 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=18.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVF 102 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl 102 (537)
+..+.|.||+|+||||+++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3457899999999999999744
No 323
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.55 E-value=0.12 Score=55.93 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 60 ~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..|......+..........+..+.|.|++|+||||+.+.+...+.
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 44555555555554433333455789999999999999999998875
No 324
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.52 E-value=0.4 Score=51.24 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=38.2
Q ss_pred HHHHHHHHcccCCC-------CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009352 67 ILELLRLLGTLNSS-------MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (537)
Q Consensus 67 i~~L~~ll~~~~~~-------~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s 119 (537)
.++|..+++....+ ...|.|.|++|+||||++..++..+ +.++..|+|.....
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 142 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 35677778763211 1247889999999999999999765 56788888865444
No 325
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.51 E-value=0.13 Score=44.68 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=20.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
+.++|.|++|+||||+++.++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999865
No 326
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.49 E-value=0.35 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=19.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..|.|.|++|+||||+++.+.+.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998873
No 327
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.41 E-value=0.17 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999765
No 328
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=90.34 E-value=0.57 Score=51.37 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=30.0
Q ss_pred CCCeEEECCCCCCHHHH-HHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 81 MPPLFVYGSASTGKTSI-IIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsi-v~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
+..+++.+|+|+|||+. +-.+++.+ +...+++. -.+.|-..+...+.+
T Consensus 186 g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~-----PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 186 KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILA-----PTRVVAAEMEEALRG 237 (618)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE-----SSHHHHHHHHHHTTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEc-----ChHHHHHHHHHHhcC
Confidence 56799999999999975 34455432 23445443 224566666666643
No 329
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=90.29 E-value=0.46 Score=49.80 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=29.1
Q ss_pred CCCeEEECCCCCCHHHH-HHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 81 MPPLFVYGSASTGKTSI-IIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsi-v~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
...+++.||+|+|||.. +-.++.++ +...+++. -.+.|-+.+...+.+
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~-----Ptr~La~Q~~~~l~g 70 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILA-----PTRVVAAEMEEALRG 70 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEE-----SSHHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEEC-----CCHHHHHHHHHHhcC
Confidence 34569999999999973 55554432 33445443 224566666666643
No 330
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.22 E-value=0.2 Score=54.96 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=27.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~in 113 (537)
.|+|.|.+|+||||+++.+.+.| +.+++.++
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 48999999999999999999998 77777775
No 331
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.12 E-value=0.17 Score=45.72 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
...|+|+.|+|||+++.++.-.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999887664
No 332
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.96 E-value=0.14 Score=52.29 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
+..+.|.||+|+||||+++.++..+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 44789999999999999999987764
No 333
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.93 E-value=0.19 Score=46.59 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.+.++|.|++|+|||+++..++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999999764
No 334
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.92 E-value=0.46 Score=47.08 Aligned_cols=54 Identities=17% Similarity=0.058 Sum_probs=36.6
Q ss_pred HHHHHHHHHcccCCC-------CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009352 66 QILELLRLLGTLNSS-------MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (537)
Q Consensus 66 qi~~L~~ll~~~~~~-------~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s 119 (537)
..+.|...++....+ +..+.+.|++|+||||++..++..+ +.++.+++|.....
T Consensus 76 ~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 76 VYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 345566666543211 2236788999999999999998665 45788888765543
No 335
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=89.81 E-value=1.6 Score=50.32 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=30.6
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.+.-|.-|...+..++. +.+++|.+|+|+|||.+....+.+.
T Consensus 246 ~~~~r~~Q~~ai~~il~-----g~~~ll~a~TGsGKTl~~~~~i~~~ 287 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN-----GKNALICAPTGSGKTFVSILICEHH 287 (936)
T ss_dssp --CCCHHHHHHHHHHHT-----TCCEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHc-----CCCEEEEeCCCchHHHHHHHHHHHH
Confidence 45567888888877764 3579999999999997766665443
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.81 E-value=0.18 Score=48.25 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.+-|.||+|+||||+++.+...++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 477999999999999999988776
No 337
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.70 E-value=0.18 Score=47.86 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=24.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~~~ 109 (537)
.|.|.|++|||||++.+.+.+.++.++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 478999999999999999999998543
No 338
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.55 E-value=0.6 Score=48.10 Aligned_cols=37 Identities=8% Similarity=0.071 Sum_probs=27.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccc
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLS 116 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l-----~~~~~~inc~~ 116 (537)
.+..+.|.||+|+|||++++.+.+.. +..++|+-|.+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE 214 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 214 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC
Confidence 35579999999999999999888754 23355554443
No 339
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.51 E-value=0.44 Score=45.35 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=28.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~ 120 (537)
+|++.|++|+|||+++..+...+ +.++..+.+....+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 59999999999999988777654 457777776554443
No 340
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=89.45 E-value=1.4 Score=48.79 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=30.4
Q ss_pred CCCCeEEECCCCCCHHHH-HHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009352 80 SMPPLFVYGSASTGKTSI-IIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLL 133 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsi-v~~vl~~l---~~~~~~inc~~~~s~~~l~~~Il~~L~~ 133 (537)
.+..++|.||+|+|||.+ +..+++.+ +...+++.- .+.|-..+...+.+
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaP-----Tr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAP-----TRVVAAEMAEALRG 292 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEES-----SHHHHHHHHHHTTT
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEcc-----HHHHHHHHHHHHhc
Confidence 356799999999999976 45555442 234455431 24555556555543
No 341
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.24 E-value=0.46 Score=47.59 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcccC-----C-------CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009352 65 VQILELLRLLGTLN-----S-------SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (537)
Q Consensus 65 ~qi~~L~~ll~~~~-----~-------~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~ 116 (537)
...++|..++++.. . ++..+.|.|++|+||||++..++..+ +.++..+.|..
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 77 ALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp HHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 33466777776532 1 11237899999999999999988654 45777777754
No 342
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.19 E-value=0.22 Score=49.35 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=28.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc----CCCeEEEecccc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSC 117 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~ 117 (537)
.+.|.|++|+||||++..++..+ +.++.++.|...
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 57899999999999999998654 347788887654
No 343
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.17 E-value=0.18 Score=51.72 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||+|+||||+++.++..+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 345689999999999999999998653
No 344
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.14 E-value=0.22 Score=43.48 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+||||+++.++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 345
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.12 E-value=0.23 Score=43.20 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 346
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.01 E-value=0.3 Score=52.74 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=38.2
Q ss_pred cCCChHHHHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009352 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (537)
Q Consensus 59 ~~~~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~in 113 (537)
.+..|.+....|.....+..+.+..|++.|++|+||||+++.+.+.++ ..+.+++
T Consensus 350 ~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 350 EWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 455666666666666533222234588999999999999999998764 3455665
No 347
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.00 E-value=0.19 Score=48.96 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc-------------CCCeEEEeccc
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHL-------------SRPFVYTSCLS 116 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l-------------~~~~~~inc~~ 116 (537)
.+..+.|+|++|+|||+++..++..+ +.+++|++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 34568999999999999999988543 13567877654
No 348
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.99 E-value=0.55 Score=47.37 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=28.2
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~ 115 (537)
..+..+.|.|++|+||||++..++..+ +.++..+.+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 344568899999999999999998654 4566666654
No 349
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.91 E-value=0.22 Score=46.85 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=22.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..|.|.|++|+||||+++.+.+.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999988875
No 350
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.89 E-value=0.38 Score=47.79 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=32.1
Q ss_pred HHHHHHHHcccC--C-------CCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccC
Q 009352 67 ILELLRLLGTLN--S-------SMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCY 118 (537)
Q Consensus 67 i~~L~~ll~~~~--~-------~~~~l~I~G~~GtGKTsiv~~vl~~l~--~~~~~inc~~~~ 118 (537)
.++|..++++.. . ++..+.|.||+|+||||+++.++..+. ..-+.+++.+.+
T Consensus 77 ~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 77 KESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp HHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred HHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 355666665532 1 122377999999999999999987653 223444444433
No 351
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.89 E-value=0.69 Score=48.39 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcccCC-----CC-C-CeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCC
Q 009352 65 VQILELLRLLGTLNS-----SM-P-PLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYS 119 (537)
Q Consensus 65 ~qi~~L~~ll~~~~~-----~~-~-~l~I~G~~GtGKTsiv~~vl~~l----~~~~~~inc~~~~s 119 (537)
-..++|..++++... .. + .|.|.|++|+||||++..++..+ +.++..|+|....+
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 344667777765321 11 2 37788999999999999998654 66888888876544
No 352
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.86 E-value=0.21 Score=43.33 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.++|.|++|+||||+++.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 353
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.86 E-value=0.24 Score=43.29 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 354
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.86 E-value=0.22 Score=47.30 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=22.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.|.|.|++|+||||+++.+.+.++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999985
No 355
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.83 E-value=0.24 Score=43.79 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+||||+++.++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 356
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.80 E-value=0.22 Score=43.93 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
..+|+||.|+|||+++.++.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999998887544
No 357
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.67 E-value=0.24 Score=43.65 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||++++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999998853
No 358
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.66 E-value=0.25 Score=43.17 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.+.|.|++|+|||++++.++..-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 359
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.65 E-value=0.25 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+||||++..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 360
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.62 E-value=0.27 Score=43.46 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
...|.|.|++|+||||++..++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 361
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.61 E-value=0.25 Score=42.93 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||++++.++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 362
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.57 E-value=0.26 Score=43.21 Aligned_cols=22 Identities=23% Similarity=0.529 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+||||+++.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 363
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.53 E-value=0.4 Score=47.89 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=27.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCY 118 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~-----~~~~~inc~~~~ 118 (537)
.+-|.||+|+||||+++.+...+. ..+.+|.-...+
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~ 132 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL 132 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB
T ss_pred EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC
Confidence 478999999999999999988764 246666544433
No 364
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.51 E-value=0.19 Score=47.51 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=20.9
Q ss_pred CCeEEECCCCCCHHH-HHHHHHHhc--CCCeEEEe
Q 009352 82 PPLFVYGSASTGKTS-IIIQVFRHL--SRPFVYTS 113 (537)
Q Consensus 82 ~~l~I~G~~GtGKTs-iv~~vl~~l--~~~~~~in 113 (537)
.-.+|+|+-|+|||+ +++.+.+.. +.++..++
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 346899999999998 555554432 33554444
No 365
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.46 E-value=0.15 Score=51.38 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=27.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEe
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTS 113 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~in 113 (537)
+..+.|.||+|+||||+++.++..+.. ..+.++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 205 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence 668999999999999999999987753 345554
No 366
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.44 E-value=0.26 Score=46.54 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=26.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~i 112 (537)
+..|.|.|++|+||||+++.+.+.++..+..+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 34688999999999999999999998644333
No 367
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.43 E-value=0.36 Score=48.71 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=25.5
Q ss_pred HHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.-+......+..+.|.|++|+||||+++.++..+
T Consensus 46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3343333445568899999999999999998765
No 368
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.33 E-value=0.27 Score=42.84 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||++++.++..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 369
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.28 E-value=0.25 Score=43.24 Aligned_cols=22 Identities=14% Similarity=0.554 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.|.|++|+|||+++..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999999854
No 370
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.26 E-value=0.26 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.620 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||++++.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 371
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.26 E-value=0.36 Score=51.80 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=25.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEEec
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSC 114 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~---~~~~~inc 114 (537)
.|++.|.||+||||+.+.+.+.++ .+...+|.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 478999999999999999998874 44555553
No 372
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.25 E-value=0.27 Score=44.95 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.|.|++|+||||+++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 373
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.17 E-value=0.29 Score=42.63 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.|.|++|+|||+++..++..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 374
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.11 E-value=0.27 Score=43.43 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.|.|++|+||||+++.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 375
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.05 E-value=0.29 Score=42.72 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||+++..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 376
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.05 E-value=0.27 Score=47.14 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..|.|.|++|+||||+++.+.+.+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999988774
No 377
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=88.03 E-value=0.15 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=18.5
Q ss_pred HHcccCCCCC-CeEEECCCCCCHHHHH
Q 009352 73 LLGTLNSSMP-PLFVYGSASTGKTSII 98 (537)
Q Consensus 73 ll~~~~~~~~-~l~I~G~~GtGKTsiv 98 (537)
++....++.. .||-||.+|+|||.++
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3333333443 4999999999999886
No 378
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.02 E-value=0.23 Score=47.38 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=23.3
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++..+.|.||.|+||||+++.+.-.+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3455688999999999999999887654
No 379
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.02 E-value=0.26 Score=44.87 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.+.|.|++|+||||+++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 380
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.93 E-value=0.3 Score=43.16 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.|.|++|+|||++++.+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999854
No 381
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.83 E-value=0.29 Score=42.90 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=18.9
Q ss_pred CeEEECCCCCCHHHHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFR 103 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~ 103 (537)
.+.|.|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999874
No 382
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.78 E-value=0.25 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
...+.|.|++|+||||++..++..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999864
No 383
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.65 E-value=0.31 Score=42.67 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
..|.|.|++|+|||+++..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 384
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.65 E-value=0.28 Score=43.26 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
No 385
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.64 E-value=0.31 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||+++..++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999975
No 386
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.58 E-value=0.32 Score=42.94 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 387
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.58 E-value=0.17 Score=48.92 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=22.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.|+|.|++|+||||+++.+.+.++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999999984
No 388
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.57 E-value=0.31 Score=43.57 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 389
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.51 E-value=0.48 Score=45.23 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=27.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc--CCCeEEEecc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL--SRPFVYTSCL 115 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l--~~~~~~inc~ 115 (537)
.+++.|.+|+||||++..++..+ +.+++.|++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47899999999999999998765 5577777754
No 390
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.48 E-value=0.26 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=19.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.|.|++|+||||+++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998863
No 391
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.47 E-value=0.26 Score=47.07 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++..+.|.||.|+||||+++.++..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455688999999999999999986653
No 392
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.42 E-value=0.53 Score=48.00 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=32.5
Q ss_pred HHHHHHHHcccC--C-------CCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccC
Q 009352 67 ILELLRLLGTLN--S-------SMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCY 118 (537)
Q Consensus 67 i~~L~~ll~~~~--~-------~~~~l~I~G~~GtGKTsiv~~vl~~l~--~~~~~inc~~~~ 118 (537)
.++|..++++.. . ++..+.|.||+|+||||+++.++..+. ..-+.+++.+.+
T Consensus 134 ~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 134 KESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp HHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred HHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 355666675532 1 112377999999999999999987653 233444443333
No 393
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.41 E-value=0.3 Score=43.15 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||++++.++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 394
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.35 E-value=0.34 Score=43.27 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+||||++..++..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 395
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.34 E-value=0.28 Score=44.04 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
+.|.|.|++|+||||++..++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 396
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.21 E-value=0.34 Score=42.92 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 397
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.08 E-value=0.33 Score=43.47 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.|.|++|+||||+++.++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
No 398
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.06 E-value=0.29 Score=42.73 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.7
Q ss_pred CeEEECCCCCCHHHHHHHHHH
Q 009352 83 PLFVYGSASTGKTSIIIQVFR 103 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~ 103 (537)
.+.|.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 488999999999999998863
No 399
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.06 E-value=0.35 Score=43.65 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 400
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.05 E-value=0.31 Score=43.57 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 401
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.83 E-value=0.37 Score=42.84 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 402
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.82 E-value=0.53 Score=42.25 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
...|.|.|++|+|||++++.++..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999853
No 403
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=86.81 E-value=0.41 Score=45.00 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=32.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc----CC-HHHHHHHHHHHHhh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC----YS-PRILFESILNQLLL 133 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~~~~~~inc~~~----~s-~~~l~~~Il~~L~~ 133 (537)
-.|-|+|..||||||+.+.+.+ ++.+ +++|... .. ....+..|...++.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~--vidaD~ia~~l~~~~~~~~~~i~~~fG~ 63 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGAS--LVDTDLIAHRITAPAGLAMPAIEQTFGP 63 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCE--EEEHHHHHHHHTSTTCTTHHHHHHHHCG
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCc--EEECcHHHHHHhcCCcHHHHHHHHHhCh
Confidence 3578999999999999998766 7644 4555431 21 12345666666643
No 404
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.75 E-value=0.36 Score=45.82 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=22.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLSR 107 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~~ 107 (537)
.|.|.|++|+||||+++.+.+.++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999987753
No 405
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.74 E-value=0.17 Score=45.91 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.+.|.|++|+||||+++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998765
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.74 E-value=0.36 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..|.|.|++|+||||+++.+.+.|.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998874
No 407
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.72 E-value=0.29 Score=46.35 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=22.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.+.-.+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455688999999999999999886654
No 408
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.70 E-value=0.36 Score=43.01 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999965
No 409
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.70 E-value=0.34 Score=43.48 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.++|.|++|+|||++++.++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999865
No 410
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.66 E-value=0.36 Score=45.47 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.++-.+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456788999999999999999887654
No 411
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.63 E-value=0.38 Score=43.22 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|.+|+||||++..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 412
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.59 E-value=0.39 Score=42.54 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||+++..++..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 413
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.58 E-value=0.31 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
+..+.|.||.|+||||+++.++-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998864
No 414
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.58 E-value=0.36 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+||||++..++..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 415
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.55 E-value=0.32 Score=47.25 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++..+.|.||.|+||||+++.++-.+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455688999999999999999887665
No 416
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=86.54 E-value=2.6 Score=51.62 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=28.3
Q ss_pred HHHHHHHHHcccCCCCCCeEEECCCCCCHHHHHHHHH-Hhc----CCCeEEEe
Q 009352 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF-RHL----SRPFVYTS 113 (537)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl-~~l----~~~~~~in 113 (537)
|-+-+-.++.. ..+++|.+|+|+|||.+....+ +.+ +.+.+||.
T Consensus 931 Q~q~~~~l~~~----~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~ 979 (1724)
T 4f92_B 931 QTQVFNTVYNS----DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYIT 979 (1724)
T ss_dssp HHHHHHHHHSC----CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHhcC----CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEc
Confidence 44444444443 4689999999999997654433 332 44677775
No 417
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.46 E-value=0.36 Score=42.64 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
..|+|.|++|+||||+++.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998753
No 418
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.42 E-value=0.4 Score=43.29 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 3899999999999999999864
No 419
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.40 E-value=0.4 Score=43.28 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEEECCCCCCHHHHHHHHHHh
Q 009352 84 LFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 84 l~I~G~~GtGKTsiv~~vl~~ 104 (537)
|+|.|++|+|||++++.++..
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999988865
No 420
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.39 E-value=0.38 Score=43.79 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+||||++..++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 421
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.35 E-value=0.65 Score=49.36 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=31.6
Q ss_pred HHHHHHHcccCC-------CCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEecccc
Q 009352 68 LELLRLLGTLNS-------SMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSC 117 (537)
Q Consensus 68 ~~L~~ll~~~~~-------~~~~l~I~G~~GtGKTsiv~~vl~~l~--~~~~~inc~~~ 117 (537)
+.|..+|+.... .+..+.|.|++|+||||+++.++..+. ..-+.+++...
T Consensus 273 ~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 273 EEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp HHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred HHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 455566654321 122478999999999999999987653 23344543333
No 422
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.34 E-value=0.34 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
...+-|.|++|+||||+++.++...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568899999999999999999744
No 423
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.33 E-value=0.33 Score=43.47 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+||||++..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999999864
No 424
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=86.31 E-value=0.61 Score=44.08 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQVF 102 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl 102 (537)
+..++|.|++|+|||+++...+
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999998766554
No 425
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.30 E-value=0.41 Score=42.57 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||++++.++..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
No 426
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=86.30 E-value=0.37 Score=47.53 Aligned_cols=24 Identities=33% Similarity=0.666 Sum_probs=21.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|.|.+|+||||++.+++..
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCC
Confidence 456999999999999999999865
No 427
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.25 E-value=0.39 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.+.|.||+|+||||+++.+...+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 477999999999999999987653
No 428
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.24 E-value=0.4 Score=46.69 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.4
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHh
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.++..+.|.||.|+||||+++.++-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999875
No 429
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.16 E-value=0.39 Score=46.05 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..+.|.||.|+||||+++.+.-.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999987654
No 430
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=86.14 E-value=0.42 Score=42.98 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
No 431
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.13 E-value=0.42 Score=43.03 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.12 E-value=0.42 Score=42.36 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
-.+.|.|++|+|||+++..++..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 433
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.12 E-value=0.42 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 434
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.05 E-value=0.4 Score=43.31 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.|+|.|++|+|||++++.++..-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 435
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.01 E-value=0.43 Score=42.99 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999964
No 436
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=85.99 E-value=0.38 Score=52.61 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=16.7
Q ss_pred CCCeEEECCCCCCHHHHHHH
Q 009352 81 MPPLFVYGSASTGKTSIIIQ 100 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~ 100 (537)
..+++|.|+||||||+++..
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHH
Confidence 45799999999999977554
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.91 E-value=0.36 Score=46.86 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++..+.|.||.|+||||+++.++..+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3455688999999999999999987654
No 438
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.90 E-value=0.35 Score=51.87 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=36.8
Q ss_pred HHHHHcccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHH
Q 009352 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFES 126 (537)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GtGKTsiv~~vl~~l---~~~~~~inc~~~~s~~~l~~~ 126 (537)
|-.+|+....++..+.|.|++|+|||++++.++..+ +.+++|+.-.+ +...++..
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee--~~~~l~~~ 327 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE--SRAQLLRN 327 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS--CHHHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC--CHHHHHHH
Confidence 334555544556678999999999999999998654 33567776543 34444433
No 439
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.89 E-value=0.36 Score=46.95 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.4
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++..+.|.||.|+||||+++.+.-.+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3455688999999999999999887654
No 440
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=85.82 E-value=0.44 Score=42.77 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 441
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.79 E-value=0.32 Score=46.66 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.++-.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445688999999999999999986553
No 442
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.79 E-value=0.41 Score=43.58 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 443
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.74 E-value=0.37 Score=47.11 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=23.7
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++..+.|.||.|+||||+++.++-.+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456688999999999999999987665
No 444
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=85.73 E-value=0.45 Score=42.93 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 445
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.72 E-value=0.38 Score=45.64 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.++-.+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 455688999999999999999987664
No 446
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.72 E-value=0.44 Score=45.86 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHh
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
++..+.|.||.|+||||+++.++-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556889999999999999999875
No 447
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.64 E-value=0.46 Score=43.07 Aligned_cols=22 Identities=23% Similarity=0.665 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 448
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=85.61 E-value=0.59 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.+.|.||+|+||||+++.++ .+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 46799999999999999998 543
No 449
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.61 E-value=0.53 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
..|+|.|.+|+||||++..++..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999854
No 450
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.61 E-value=0.38 Score=46.53 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.++-.+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455688999999999999999987664
No 451
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.56 E-value=0.35 Score=47.18 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=21.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++.|.||+|+||||+++.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 477999999999999999997654
No 452
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.49 E-value=0.47 Score=43.21 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.47 E-value=0.43 Score=43.16 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||+++..++..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 454
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=85.47 E-value=0.35 Score=42.86 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.++|.|++|+|||+++..++..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 455
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.44 E-value=0.4 Score=46.48 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.3
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++..+.|.||.|+||||+++.++-.+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455688999999999999999987654
No 456
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.39 E-value=0.42 Score=42.50 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||+++..++..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 457
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.37 E-value=0.42 Score=42.63 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.|.|++|+||||+++.+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999864
No 458
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.36 E-value=0.43 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
..+.|.|++|+|||++++.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 459
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.31 E-value=0.41 Score=48.79 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||+|+||||+++.++-.+.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 455688999999999999999986554
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.29 E-value=0.46 Score=44.14 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..+|+||.|+|||+++.++.-.+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999988775543
No 461
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.23 E-value=0.41 Score=46.06 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||+|+||||+++.++..+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455688999999999999999887665
No 462
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=85.23 E-value=0.44 Score=43.54 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 463
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.22 E-value=0.49 Score=42.43 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=19.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.|+|.|++|+|||++++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999997766543
No 464
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.21 E-value=0.4 Score=46.63 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.1
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.++..+.|.||.|+||||+++.+.-.+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3455688999999999999999886654
No 465
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.20 E-value=0.39 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
..+.|.|++|+|||++++.++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999854
No 466
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=85.16 E-value=0.59 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
..|.|.|.+|+||||++..++..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999964
No 467
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=85.12 E-value=0.5 Score=42.70 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 468
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.09 E-value=0.42 Score=45.72 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.++-.+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455688999999999999999987654
No 469
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.95 E-value=0.49 Score=48.33 Aligned_cols=27 Identities=11% Similarity=0.253 Sum_probs=22.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||+|+||||+++.++-.+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 455688999999999999999986554
No 470
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=84.91 E-value=0.46 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=22.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.|++.|.||+||||+++.+.+.++
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998875
No 471
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.90 E-value=0.51 Score=43.15 Aligned_cols=22 Identities=14% Similarity=0.554 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999854
No 472
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=84.83 E-value=0.46 Score=48.73 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccCCCCC-CeEEECCCCCCHHHHHH
Q 009352 64 RVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIII 99 (537)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~-~l~I~G~~GtGKTsiv~ 99 (537)
++.++.+..++....++.. .||-||.+|+|||.++.
T Consensus 98 ~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 98 DEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred hhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 4445556666666666554 49999999999998763
No 473
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.82 E-value=0.45 Score=45.91 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.++-.+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455688999999999999999887654
No 474
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.81 E-value=0.49 Score=48.25 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||+|+||||+++.++-.+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 455688999999999999999986554
No 475
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.75 E-value=0.52 Score=43.31 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
..|+|.|++|+|||+++..++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998653
No 476
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.75 E-value=0.49 Score=42.69 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+||||+++.++..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999864
No 477
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.62 E-value=0.48 Score=47.26 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=24.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEE
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYT 112 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l-~~~~~~i 112 (537)
.+.+.|.|+.|+||||+++.++... +.+++.|
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi 36 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVI 36 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEE
Confidence 3457899999999999999999764 2344444
No 478
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.59 E-value=0.51 Score=48.33 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 79 ~~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
..+..+.|.||+|+||||+++.++-.+.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3455688999999999999999986554
No 479
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=84.57 E-value=0.45 Score=46.62 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.+.-.+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 455688999999999999999987654
No 480
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=84.53 E-value=0.4 Score=42.88 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 481
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=84.45 E-value=0.49 Score=47.94 Aligned_cols=25 Identities=20% Similarity=0.176 Sum_probs=21.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.+.+.|.|+||+||||+++.++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999999764
No 482
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=84.45 E-value=0.5 Score=43.07 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|.+|+|||++++.++..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999999965
No 483
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.44 E-value=0.47 Score=42.19 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHH
Q 009352 82 PPLFVYGSASTGKTSIIIQVFR 103 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~ 103 (537)
..|.|.|++|+||||++..++.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999988873
No 484
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=84.40 E-value=0.48 Score=43.26 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 485
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.36 E-value=1.4 Score=40.98 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009352 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
.|.|-|+.|+||||.++.+.+.|.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 377889999999999999999885
No 486
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=84.35 E-value=0.53 Score=44.48 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=21.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009352 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 82 ~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
..|.|.|++|+||||+++.++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 358999999999999999999653
No 487
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.31 E-value=0.54 Score=48.33 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=22.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++-.+.|.||+|+||||+++.++-.+.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 455688999999999999999986554
No 488
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.31 E-value=0.61 Score=47.76 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=22.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~l 105 (537)
.++++|.|++|+|||++++.++..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988654
No 489
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.22 E-value=0.52 Score=43.38 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||++++.++..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=84.22 E-value=0.34 Score=43.21 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=9.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..+...
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988753
No 491
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=84.19 E-value=0.55 Score=42.61 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||+++..++..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999854
No 492
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.19 E-value=0.55 Score=47.81 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||+|+||||+++.++-.+.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455688999999999999999986543
No 493
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.17 E-value=0.48 Score=45.72 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.++-.+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455688999999999999999987654
No 494
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.10 E-value=0.53 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.10 E-value=0.54 Score=42.85 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009352 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 81 ~~~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
+..++|.|++|+|||+++..+++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 346899999999999999999985
No 496
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.07 E-value=0.49 Score=42.47 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.+.|.|++|+|||++++.+...
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998754
No 497
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.04 E-value=0.5 Score=46.38 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~ 106 (537)
++..+.|.||.|+||||+++.++-.+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455688999999999999999987665
No 498
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=83.92 E-value=0.51 Score=45.97 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=26.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEec
Q 009352 80 SMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSC 114 (537)
Q Consensus 80 ~~~~l~I~G~~GtGKTsiv~~vl~~l~~--~~~~inc 114 (537)
++..+-|.||.|+||||+++.++-.+.. --++++.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 4556889999999999999999876542 2344543
No 499
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=83.89 E-value=0.59 Score=43.07 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|+|.|++|+|||++++.++..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 500
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.85 E-value=0.57 Score=42.26 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009352 83 PLFVYGSASTGKTSIIIQVFRH 104 (537)
Q Consensus 83 ~l~I~G~~GtGKTsiv~~vl~~ 104 (537)
.|.|.|++|+|||++++.++..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999965
Done!