BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009353
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 147 FRQSNRLQGTMEQFAAKLEAVYNASGGKKINIISHSMGGLLVKCFLSLHSDIFEKYVQKW 206
F+ + G EQ A ++ V A+G K+N++ HS GGL + ++ D+ V
Sbjct: 52 FQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDL----VASV 107
Query: 207 IAIAAPFQGA 216
I P +G+
Sbjct: 108 TTIGTPHRGS 117
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 147 FRQSNRLQGTMEQFAAKLEAVYNASGGKKINIISHSMGGLLVKCFLSLHSDIFEKYVQKW 206
F+ + G EQ A ++ V A+G K+N++ HS GGL + ++ D+ V
Sbjct: 52 FQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDL----VASV 107
Query: 207 IAIAAPFQGA 216
I P +G+
Sbjct: 108 TTIGTPHRGS 117
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 147 FRQSNRLQGTMEQFAAKLEAVYNASGGKKINIISHSMGGLLVKCFLSLHSDIFEKYVQKW 206
F+ + G EQ A ++ V A+G K+N+I HS GGL + + + + V
Sbjct: 51 FQSDDGPNGRGEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAA----VAPQLVASV 106
Query: 207 IAIAAPFQGA 216
I P +G+
Sbjct: 107 TTIGTPHRGS 116
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 147 FRQSNRLQGTMEQFAAKLEAVYNASGGKKINIISHSMGGLLVKCFLSLHSDIFEKYVQKW 206
F+ + G EQ A ++ V A+G K+N+I HS GGL + + + + V
Sbjct: 52 FQSDDGPNGRGEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAA----VAPQLVASV 107
Query: 207 IAIAAPFQGA 216
I P +G+
Sbjct: 108 TTIGTPHRGS 117
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 147 FRQSNRLQGTMEQFAAKLEAVYNASGGKKINIISHSMGGLLVKCFLSLHSDIFEKYVQKW 206
F+ + G EQ A ++ V A+G K+N+I HS GGL + + + + V
Sbjct: 52 FQSDDGPNGRGEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAA----VAPQLVASV 107
Query: 207 IAIAAPFQGA 216
I P +G+
Sbjct: 108 TTIGTPHRGS 117
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 158 EQFAAKLEAVYNASGGKKINIISHSMGGLLVKCFLSLHSDIFEKYVQKWIAIAAPFQGA- 216
EQ ++E + SG K+N+I HS GG ++ ++ D+ + ++ AP +G+
Sbjct: 58 EQLLQQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDL----IASATSVGAPHKGSD 113
Query: 217 ---------PGYVTSAFLNGM 228
PG A L+G+
Sbjct: 114 TADFLRQIPPGSAGEAVLSGL 134
>pdb|1TCB|A Chain A, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1TCB|B Chain B, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1TCC|A Chain A, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1TCC|B Chain B, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1LBS|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|B Chain B, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|C Chain C, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|D Chain D, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|E Chain E, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|F Chain F, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBT|A Chain A, Lipase (e.c.3.1.1.3) (triacylglycerol Hydrolase)
pdb|1LBT|B Chain B, Lipase (e.c.3.1.1.3) (triacylglycerol Hydrolase)
pdb|1TCA|A Chain A, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
Length = 317
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 151 NRLQGTMEQFAAKLEAVYNASGGKKINIISHSMGGLLVKCFLSLHSDIFEKYVQKWIAIA 210
N Q E + A+Y SG K+ +++ S GGL+ + L+ I K V + +A A
Sbjct: 74 NDTQVNTEYMVNAITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSK-VDRLMAFA 132
Query: 211 APFQG 215
++G
Sbjct: 133 PDYKG 137
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 154 QGTMEQFAAKLEAVYNASGGKKINIISHSMGGLLVKCFLSLHSDIFEKYV-------QKW 206
Q + +Q AA A+ G + ++I HS GG L + L+ E+ V + W
Sbjct: 94 QYSFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPIGLEDW 153
Query: 207 IAIAAPFQGAPGYVTSAFLNGMSFVEGWEQ-NFFISKW 243
A+ P++ + + ++Q ++ +W
Sbjct: 154 KALGVPWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEW 191
>pdb|3URR|A Chain A, Structure Of Pts Iia-Like Nitrogen-Regulatory Protein Ptsn
(Bth_i0484) (Ptsn)
pdb|3URR|B Chain B, Structure Of Pts Iia-Like Nitrogen-Regulatory Protein Ptsn
(Bth_i0484) (Ptsn)
Length = 153
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 394 AESAKADGLNAEARVGVPGEHRGIVCEHHVFRILKH----WLKVGDPDPFYNP 442
A S D L A R+G G G+ H + LKH ++++ +P PF P
Sbjct: 42 ARSTVTDNLFARERLGSTGLGEGVAIPHGRIKGLKHPLAAFVRLAEPIPFEAP 94
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 324 EILKMANETCKILSRAKIPSQVKFYNIYGTNLETPHSVCYGSDDAPVTDLQE 375
+IL A E C+IL++ K + +++ G +L++ HS +D+P QE
Sbjct: 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHST---ENDSPTNVQQE 380
>pdb|3PIC|A Chain A, Glucuronoyl Esterase Catalytic Domain (Cip2_ge) From
Hypocrea Jecorina
pdb|3PIC|B Chain B, Glucuronoyl Esterase Catalytic Domain (Cip2_ge) From
Hypocrea Jecorina
pdb|3PIC|C Chain C, Glucuronoyl Esterase Catalytic Domain (Cip2_ge) From
Hypocrea Jecorina
Length = 375
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 304 ALYSNTVNYNGEMIPLPFNLEILKMANETCKILSRAKIPSQVKFYNIYGTN 354
A Y + Y G +P P + ++ N+ Q KFY++YG++
Sbjct: 104 APYPAIIGYGGGSLPAPAGVAMINFNNDNIAAQVNTGSRGQGKFYDLYGSS 154
>pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
pdb|3BJS|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
Length = 428
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 347 FYNIYGTNLETPHSVCYGSDDAPVTDLQELRNIQPKYVYVDGDGTV 392
F +++GT+ E C DAP ++ +I KY VDG G V
Sbjct: 372 FRDMFGTSFEIGADGCVEPPDAPGLGIEVDESIFEKYPAVDGPGYV 417
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 288 ILESYQSEESVEIYKEALYSNTVNYNGEMIPLPFNLEILKMANETCKILSRAKIPSQVKF 347
+L+ EE VE++++ N V Y +P+ LE LK ++S K
Sbjct: 57 VLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKI 116
Query: 348 YNIYGTNLETPHSVCYGSDD--------APVTDLQELRNIQPKYVYVDGDGTVPAESAKA 399
+I NL + G D PV E+ +P+ + GD E+ K
Sbjct: 117 LDIL--NLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKR 174
Query: 400 DG 401
G
Sbjct: 175 AG 176
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 324 EILKMANETCKILSRAKIPSQVKFYNIYGTNLETPHSVCYGSDDAPVTDLQE 375
+IL A E C+IL++ K + +++ G +L++ HS +D+P T++Q+
Sbjct: 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHST---ENDSP-TNVQQ 379
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 288 ILESYQSEESVEIYKEALYSNTVNYNGEMIPLPFNLEILKMANETCKILSRAKIPSQVKF 347
+L+ EE VE++++ N V Y +P+ LE LK ++S K
Sbjct: 55 VLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKI 114
Query: 348 YNIYGTNLETPHSVCYGSDD--------APVTDLQELRNIQPKYVYVDGDGTVPAESAKA 399
+I NL + G D PV E+ +P+ + GD E+ K
Sbjct: 115 LDIL--NLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKR 172
Query: 400 DG 401
G
Sbjct: 173 AG 174
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 266 WEHIPLLEIWREKKAADGNSHIILESYQSEESVEIYKEAL----YSNTVNYNGEMIPL-P 320
W H LLEI +EK + + I + E VE+ + L Y N ++Y+ E +
Sbjct: 257 WXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGR 316
Query: 321 FNLEILKMANETCKILSRAKIPSQV-KFYNIYGTNLETP 358
LE +A +++ K S +FY + TP
Sbjct: 317 LALERFYLALRGLPVVNHEKTSSYTDRFYEAXDDDFNTP 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,180,502
Number of Sequences: 62578
Number of extensions: 759019
Number of successful extensions: 1967
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1948
Number of HSP's gapped (non-prelim): 31
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)