Query 009354
Match_columns 537
No_of_seqs 509 out of 3825
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 12:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0144 RNA-binding protein CU 100.0 8.5E-42 1.8E-46 336.0 18.5 184 86-270 31-214 (510)
2 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-39 3.2E-44 357.2 26.5 255 3-266 94-368 (562)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-38 7.1E-43 327.2 22.3 250 3-264 9-351 (352)
4 KOG0148 Apoptosis-promoting RN 100.0 3.4E-37 7.4E-42 287.3 19.7 211 3-263 12-239 (321)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.7E-36 3.7E-41 333.0 24.4 251 3-264 6-263 (562)
6 KOG0145 RNA-binding protein EL 100.0 3.1E-35 6.8E-40 272.2 15.1 246 5-262 49-358 (360)
7 TIGR01659 sex-lethal sex-letha 100.0 8.5E-34 1.8E-38 289.2 24.5 174 85-264 103-277 (346)
8 KOG0117 Heterogeneous nuclear 100.0 2.9E-33 6.3E-38 277.2 19.9 239 3-266 89-335 (506)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 2.8E-32 6E-37 291.5 23.3 236 3-264 64-309 (578)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.9E-32 1.5E-36 289.9 20.9 240 3-262 8-351 (481)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.6E-31 5.7E-36 285.4 20.0 242 3-262 102-480 (481)
12 TIGR01645 half-pint poly-U bin 100.0 2.1E-30 4.5E-35 277.4 20.9 171 87-263 105-285 (612)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-29 3.4E-34 262.2 21.5 170 88-263 2-172 (352)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.3E-29 2.9E-34 275.6 21.5 244 3-261 181-501 (509)
15 TIGR01622 SF-CC1 splicing fact 100.0 2.3E-29 5.1E-34 270.0 20.9 246 3-262 95-448 (457)
16 KOG0123 Polyadenylate-binding 100.0 1.3E-29 2.9E-34 259.7 12.0 249 4-266 83-353 (369)
17 KOG0117 Heterogeneous nuclear 100.0 2.8E-28 6.2E-33 241.9 18.1 207 48-266 41-252 (506)
18 KOG0127 Nucleolar protein fibr 100.0 4E-28 8.6E-33 245.6 19.4 251 3-263 11-379 (678)
19 TIGR01645 half-pint poly-U bin 100.0 6.7E-28 1.5E-32 258.1 21.4 161 3-170 113-282 (612)
20 KOG0123 Polyadenylate-binding 100.0 1E-28 2.2E-33 253.2 14.3 240 5-267 6-251 (369)
21 KOG0145 RNA-binding protein EL 100.0 2.4E-28 5.2E-33 226.6 13.9 172 86-263 38-210 (360)
22 KOG0144 RNA-binding protein CU 100.0 9.6E-29 2.1E-33 244.0 11.6 254 3-263 40-505 (510)
23 TIGR01622 SF-CC1 splicing fact 100.0 1.9E-27 4.1E-32 255.3 22.3 170 86-262 86-266 (457)
24 TIGR01648 hnRNP-R-Q heterogene 100.0 1.6E-27 3.5E-32 255.0 19.3 201 50-263 18-223 (578)
25 KOG0131 Splicing factor 3b, su 100.0 1.1E-27 2.4E-32 212.0 13.4 172 87-265 7-180 (203)
26 KOG0127 Nucleolar protein fibr 99.9 8E-25 1.7E-29 221.8 15.7 169 89-263 5-197 (678)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.5E-24 1.4E-28 230.9 20.9 165 85-262 171-375 (509)
28 KOG0109 RNA-binding protein LA 99.9 1.4E-24 2.9E-29 205.1 12.8 149 90-263 3-151 (346)
29 KOG0146 RNA-binding protein ET 99.9 3E-24 6.4E-29 200.2 11.6 175 87-265 17-368 (371)
30 KOG0110 RNA-binding protein (R 99.9 4.2E-24 9.2E-29 223.5 13.1 247 3-263 391-694 (725)
31 TIGR01659 sex-lethal sex-letha 99.9 8.4E-24 1.8E-28 215.9 11.9 161 3-172 113-275 (346)
32 KOG0124 Polypyrimidine tract-b 99.9 7.4E-24 1.6E-28 205.1 10.1 167 89-261 113-289 (544)
33 KOG0148 Apoptosis-promoting RN 99.9 7E-23 1.5E-27 191.8 10.4 156 3-171 68-237 (321)
34 KOG0147 Transcriptional coacti 99.9 1.5E-22 3.3E-27 206.8 11.0 239 8-261 190-527 (549)
35 KOG0124 Polypyrimidine tract-b 99.9 1E-21 2.2E-26 190.3 13.0 247 3-261 119-534 (544)
36 KOG4205 RNA-binding protein mu 99.9 4E-21 8.7E-26 190.6 14.1 171 88-266 5-180 (311)
37 KOG0147 Transcriptional coacti 99.8 8.3E-21 1.8E-25 194.1 7.1 171 85-262 175-358 (549)
38 KOG0131 Splicing factor 3b, su 99.8 1.4E-20 3E-25 167.1 3.7 165 3-175 15-180 (203)
39 KOG0105 Alternative splicing f 99.8 7.6E-18 1.6E-22 149.6 16.1 161 87-260 4-188 (241)
40 KOG1457 RNA binding protein (c 99.7 1.1E-16 2.4E-21 146.3 15.1 160 85-247 30-274 (284)
41 PLN03134 glycine-rich RNA-bind 99.7 4.6E-17 9.9E-22 146.1 11.7 84 87-173 32-115 (144)
42 KOG4206 Spliceosomal protein s 99.7 2.2E-16 4.8E-21 146.0 14.8 162 87-260 7-220 (221)
43 PLN03134 glycine-rich RNA-bind 99.7 7.2E-16 1.6E-20 138.4 14.2 84 178-264 32-116 (144)
44 KOG0109 RNA-binding protein LA 99.7 5.4E-17 1.2E-21 153.9 5.0 142 2-172 7-150 (346)
45 KOG1190 Polypyrimidine tract-b 99.7 2.3E-15 5E-20 148.8 15.9 234 9-261 162-490 (492)
46 KOG1190 Polypyrimidine tract-b 99.6 2E-15 4.4E-20 149.1 14.8 239 3-262 34-373 (492)
47 KOG4212 RNA-binding protein hn 99.6 4.4E-15 9.6E-20 147.6 16.5 166 89-261 44-293 (608)
48 KOG4211 Splicing factor hnRNP- 99.6 3.4E-15 7.3E-20 151.4 16.0 162 87-259 8-179 (510)
49 KOG1456 Heterogeneous nuclear 99.6 8.6E-15 1.9E-19 143.1 17.5 238 4-262 38-363 (494)
50 COG0724 RNA-binding proteins ( 99.6 1.5E-14 3.2E-19 143.2 17.1 148 89-239 115-285 (306)
51 PF00076 RRM_1: RNA recognitio 99.6 5.3E-15 1.2E-19 115.6 8.8 70 92-165 1-70 (70)
52 KOG0106 Alternative splicing f 99.6 1.9E-15 4.2E-20 141.3 7.0 149 90-259 2-168 (216)
53 KOG0122 Translation initiation 99.6 4.9E-15 1.1E-19 137.7 9.5 83 87-172 187-269 (270)
54 KOG1548 Transcription elongati 99.6 5.6E-14 1.2E-18 136.7 17.0 166 87-262 132-352 (382)
55 KOG0110 RNA-binding protein (R 99.6 1.7E-14 3.6E-19 152.0 14.4 163 87-261 383-597 (725)
56 KOG0149 Predicted RNA-binding 99.6 5.1E-15 1.1E-19 137.2 9.2 82 86-169 9-90 (247)
57 KOG4205 RNA-binding protein mu 99.6 8.5E-15 1.8E-19 145.6 10.0 196 2-208 11-215 (311)
58 KOG0121 Nuclear cap-binding pr 99.5 1.4E-14 3.1E-19 121.5 7.2 82 86-170 33-114 (153)
59 PF14259 RRM_6: RNA recognitio 99.5 9.7E-14 2.1E-18 108.8 8.9 70 92-165 1-70 (70)
60 PF00076 RRM_1: RNA recognitio 99.5 1.8E-13 3.8E-18 106.9 8.7 70 183-255 1-70 (70)
61 KOG0120 Splicing factor U2AF, 99.5 7.4E-13 1.6E-17 138.0 15.7 171 86-262 286-492 (500)
62 KOG4212 RNA-binding protein hn 99.5 1.5E-12 3.1E-17 129.9 16.6 135 4-154 143-279 (608)
63 KOG0125 Ataxin 2-binding prote 99.5 1.8E-13 4E-18 132.1 9.0 84 84-172 91-174 (376)
64 KOG0107 Alternative splicing f 99.5 1.8E-13 3.9E-18 121.3 8.0 79 88-174 9-87 (195)
65 KOG0126 Predicted RNA-binding 99.4 1.4E-14 3.1E-19 128.7 0.8 85 86-173 32-116 (219)
66 KOG0113 U1 small nuclear ribon 99.4 4.3E-13 9.3E-18 128.1 10.5 91 78-171 90-180 (335)
67 PLN03120 nucleic acid binding 99.4 4E-13 8.7E-18 129.1 10.3 77 89-172 4-80 (260)
68 KOG0125 Ataxin 2-binding prote 99.4 2.5E-13 5.5E-18 131.2 8.7 82 177-262 93-174 (376)
69 KOG4211 Splicing factor hnRNP- 99.4 6.2E-12 1.3E-16 127.9 17.5 224 4-240 17-340 (510)
70 KOG0122 Translation initiation 99.4 6.1E-13 1.3E-17 123.9 8.9 83 177-262 186-269 (270)
71 PLN03213 repressor of silencin 99.4 7.3E-13 1.6E-17 133.7 9.8 81 85-172 6-88 (759)
72 KOG0114 Predicted RNA-binding 99.4 1.1E-12 2.4E-17 106.2 8.0 82 86-173 15-96 (124)
73 KOG0149 Predicted RNA-binding 99.4 1.8E-12 4E-17 120.4 10.2 79 179-261 11-90 (247)
74 KOG4207 Predicted splicing fac 99.4 7.9E-13 1.7E-17 120.0 7.2 83 87-172 11-93 (256)
75 smart00362 RRM_2 RNA recogniti 99.4 2.7E-12 5.9E-17 99.7 9.5 71 91-166 1-71 (72)
76 KOG0111 Cyclophilin-type pepti 99.4 3.2E-13 6.9E-18 123.5 4.5 86 87-175 8-93 (298)
77 KOG0108 mRNA cleavage and poly 99.4 1.3E-12 2.8E-17 135.6 8.3 82 90-174 19-100 (435)
78 KOG0107 Alternative splicing f 99.4 3E-12 6.4E-17 113.6 9.2 79 179-264 9-87 (195)
79 KOG1456 Heterogeneous nuclear 99.4 1E-10 2.2E-15 114.9 20.6 167 85-263 27-200 (494)
80 PF14259 RRM_6: RNA recognitio 99.3 3.9E-12 8.4E-17 99.6 8.4 70 183-255 1-70 (70)
81 PLN03121 nucleic acid binding 99.3 4.6E-12 9.9E-17 119.9 10.3 77 88-171 4-80 (243)
82 smart00360 RRM RNA recognition 99.3 4.4E-12 9.5E-17 98.1 8.4 70 94-166 1-70 (71)
83 KOG4207 Predicted splicing fac 99.3 2.4E-12 5.2E-17 116.9 7.1 80 180-262 13-93 (256)
84 PLN03120 nucleic acid binding 99.3 6.6E-12 1.4E-16 120.8 9.8 77 180-262 4-80 (260)
85 KOG0132 RNA polymerase II C-te 99.3 6.1E-11 1.3E-15 126.2 17.8 105 88-201 420-527 (894)
86 KOG0113 U1 small nuclear ribon 99.3 4.4E-12 9.6E-17 121.3 7.8 91 169-262 90-181 (335)
87 KOG0129 Predicted RNA-binding 99.3 4E-11 8.7E-16 122.9 14.9 151 84-239 254-431 (520)
88 KOG0105 Alternative splicing f 99.3 7.7E-12 1.7E-16 111.7 8.2 79 179-262 5-83 (241)
89 KOG0111 Cyclophilin-type pepti 99.3 2.5E-12 5.5E-17 117.6 4.0 88 179-269 9-97 (298)
90 KOG0126 Predicted RNA-binding 99.3 6.9E-13 1.5E-17 118.1 -0.0 81 180-263 35-116 (219)
91 KOG0121 Nuclear cap-binding pr 99.3 9.2E-12 2E-16 104.8 6.6 82 178-262 34-116 (153)
92 KOG0130 RNA-binding protein RB 99.3 8.2E-12 1.8E-16 105.9 6.3 82 88-172 71-152 (170)
93 cd00590 RRM RRM (RNA recogniti 99.3 3.7E-11 8.1E-16 93.7 9.7 74 91-168 1-74 (74)
94 KOG1365 RNA-binding protein Fu 99.2 7.3E-12 1.6E-16 123.1 5.5 167 88-262 160-362 (508)
95 KOG4454 RNA binding protein (R 99.2 4.5E-12 9.9E-17 116.1 3.7 136 88-243 8-147 (267)
96 KOG0146 RNA-binding protein ET 99.2 1.5E-11 3.3E-16 115.7 6.9 104 161-266 2-105 (371)
97 smart00362 RRM_2 RNA recogniti 99.2 4.9E-11 1.1E-15 92.5 8.5 72 182-257 1-72 (72)
98 PLN03213 repressor of silencin 99.2 3.1E-11 6.6E-16 122.2 8.5 79 178-262 8-88 (759)
99 KOG0114 Predicted RNA-binding 99.2 7E-11 1.5E-15 95.9 7.5 79 179-262 17-95 (124)
100 smart00361 RRM_1 RNA recogniti 99.2 8.8E-11 1.9E-15 92.1 7.9 61 103-166 2-69 (70)
101 KOG0130 RNA-binding protein RB 99.2 4.2E-11 9.2E-16 101.6 6.2 84 179-265 71-155 (170)
102 PLN03121 nucleic acid binding 99.2 1.2E-10 2.6E-15 110.3 9.2 76 180-261 5-80 (243)
103 KOG0108 mRNA cleavage and poly 99.1 6.7E-11 1.5E-15 123.0 7.3 83 181-266 19-102 (435)
104 KOG4206 Spliceosomal protein s 99.1 1.2E-10 2.7E-15 108.1 8.2 154 4-170 16-220 (221)
105 smart00360 RRM RNA recognition 99.1 2.4E-10 5.1E-15 88.2 8.7 70 185-257 1-71 (71)
106 KOG0120 Splicing factor U2AF, 99.1 1.1E-10 2.4E-15 122.0 8.4 163 87-262 173-369 (500)
107 cd00590 RRM RRM (RNA recogniti 99.1 3.2E-10 7E-15 88.3 9.2 74 182-258 1-74 (74)
108 KOG0226 RNA-binding proteins [ 99.1 1.1E-10 2.3E-15 109.6 7.0 123 47-172 146-270 (290)
109 PF13893 RRM_5: RNA recognitio 99.1 3.1E-10 6.8E-15 84.7 8.3 56 106-169 1-56 (56)
110 KOG0128 RNA-binding protein SA 99.1 2.3E-11 5E-16 130.9 2.1 219 14-261 589-814 (881)
111 KOG0226 RNA-binding proteins [ 99.1 5.7E-11 1.2E-15 111.4 4.4 167 89-262 96-270 (290)
112 KOG4210 Nuclear localization s 99.1 1.4E-10 3E-15 115.4 6.9 175 87-266 86-268 (285)
113 PF13893 RRM_5: RNA recognitio 99.1 4.8E-10 1E-14 83.7 7.8 56 197-259 1-56 (56)
114 COG0724 RNA-binding proteins ( 99.0 7.4E-10 1.6E-14 109.4 10.1 79 180-261 115-194 (306)
115 smart00361 RRM_1 RNA recogniti 99.0 1.7E-09 3.8E-14 84.7 7.8 60 194-256 2-69 (70)
116 KOG0112 Large RNA-binding prot 99.0 6.2E-10 1.3E-14 120.5 6.1 164 85-262 368-531 (975)
117 KOG4208 Nucleolar RNA-binding 99.0 1.8E-09 4E-14 98.7 8.1 82 87-171 47-129 (214)
118 KOG0132 RNA polymerase II C-te 98.9 1.4E-08 3.1E-13 108.5 15.1 79 180-266 421-499 (894)
119 KOG0415 Predicted peptidyl pro 98.9 9E-10 1.9E-14 107.6 5.4 82 177-261 236-318 (479)
120 KOG0415 Predicted peptidyl pro 98.9 1.3E-09 2.8E-14 106.5 6.3 82 87-171 237-318 (479)
121 KOG0153 Predicted RNA-binding 98.8 1.4E-08 2.9E-13 99.6 9.8 79 85-171 224-302 (377)
122 KOG0153 Predicted RNA-binding 98.8 9.4E-09 2E-13 100.7 7.5 78 178-262 226-303 (377)
123 KOG0106 Alternative splicing f 98.8 3.9E-09 8.4E-14 99.2 4.3 146 2-168 6-167 (216)
124 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.5E-08 3.2E-13 104.5 7.4 82 88-172 404-485 (940)
125 KOG4660 Protein Mei2, essentia 98.7 1.2E-08 2.6E-13 105.9 5.8 156 86-261 72-249 (549)
126 KOG0116 RasGAP SH3 binding pro 98.7 6.7E-08 1.4E-12 100.2 11.0 84 180-267 288-372 (419)
127 KOG0533 RRM motif-containing p 98.6 9.7E-08 2.1E-12 91.8 9.0 84 85-172 79-162 (243)
128 KOG4208 Nucleolar RNA-binding 98.6 5.8E-08 1.2E-12 89.1 6.6 82 178-262 47-130 (214)
129 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.3E-07 2.9E-12 97.6 7.3 80 180-262 405-485 (940)
130 PF04059 RRM_2: RNA recognitio 98.5 4.3E-07 9.3E-12 75.0 8.8 82 90-171 2-86 (97)
131 KOG1365 RNA-binding protein Fu 98.5 7E-07 1.5E-11 88.6 11.0 155 86-244 57-229 (508)
132 PF00397 WW: WW domain; Inter 98.5 5.5E-08 1.2E-12 63.0 2.2 28 434-461 3-31 (31)
133 KOG1457 RNA binding protein (c 98.5 1E-06 2.2E-11 81.6 10.5 86 179-264 33-120 (284)
134 KOG0151 Predicted splicing reg 98.5 4.7E-07 1E-11 96.1 9.2 83 86-171 171-256 (877)
135 KOG4849 mRNA cleavage factor I 98.5 4.1E-06 8.8E-11 82.2 14.8 73 181-256 81-156 (498)
136 KOG4209 Splicing factor RNPS1, 98.4 3.1E-07 6.8E-12 88.6 5.6 84 85-172 97-180 (231)
137 KOG4210 Nuclear localization s 98.4 3E-07 6.6E-12 91.6 5.2 164 3-174 94-266 (285)
138 smart00456 WW Domain with 2 co 98.4 2.8E-07 6E-12 60.3 3.0 29 434-462 3-31 (32)
139 KOG2193 IGF-II mRNA-binding pr 98.4 7.7E-08 1.7E-12 96.3 0.5 154 90-261 2-156 (584)
140 KOG0533 RRM motif-containing p 98.3 1E-06 2.2E-11 84.8 7.2 81 179-262 82-162 (243)
141 cd00201 WW Two conserved trypt 98.3 4.1E-07 8.9E-12 58.9 3.0 29 434-462 2-30 (31)
142 KOG4849 mRNA cleavage factor I 98.3 2.9E-05 6.4E-10 76.3 16.7 71 86-156 77-149 (498)
143 KOG0116 RasGAP SH3 binding pro 98.3 1.4E-06 3.1E-11 90.4 8.1 78 88-169 287-364 (419)
144 COG5104 PRP40 Splicing factor 98.3 2.3E-07 5E-12 93.3 1.1 38 433-470 14-52 (590)
145 KOG1548 Transcription elongati 98.2 2.2E-06 4.8E-11 84.3 6.9 80 179-261 133-220 (382)
146 KOG0129 Predicted RNA-binding 98.2 4.2E-06 9.1E-11 86.6 9.1 149 2-150 264-432 (520)
147 KOG4307 RNA binding protein RB 98.2 1.5E-06 3.2E-11 92.1 5.7 163 88-258 310-510 (944)
148 KOG0112 Large RNA-binding prot 98.2 2.9E-06 6.3E-11 92.7 7.8 155 2-172 377-531 (975)
149 KOG4454 RNA binding protein (R 98.1 2E-06 4.2E-11 79.6 2.8 78 179-260 8-85 (267)
150 KOG4660 Protein Mei2, essentia 98.1 3.1E-06 6.6E-11 88.3 4.5 72 177-255 72-143 (549)
151 KOG4676 Splicing factor, argin 98.1 4.2E-06 9.2E-11 83.4 4.9 148 90-245 8-212 (479)
152 PF04059 RRM_2: RNA recognitio 98.0 2E-05 4.4E-10 65.1 8.1 82 181-262 2-87 (97)
153 KOG4209 Splicing factor RNPS1, 98.0 1.3E-05 2.8E-10 77.5 7.6 82 177-262 98-180 (231)
154 KOG0151 Predicted splicing reg 98.0 9.4E-06 2E-10 86.5 6.2 81 178-261 172-256 (877)
155 KOG0128 RNA-binding protein SA 97.9 3.1E-06 6.7E-11 92.1 1.3 142 3-171 673-814 (881)
156 KOG0115 RNA-binding protein p5 97.8 5.2E-05 1.1E-09 72.1 7.1 108 142-261 5-113 (275)
157 KOG1995 Conserved Zn-finger pr 97.8 3.5E-05 7.5E-10 76.7 5.4 85 86-173 63-155 (351)
158 PF11608 Limkain-b1: Limkain b 97.7 0.00014 2.9E-09 57.6 7.2 71 90-173 3-78 (90)
159 KOG2314 Translation initiation 97.7 0.00012 2.6E-09 76.5 8.8 80 87-169 56-141 (698)
160 COG5104 PRP40 Splicing factor 97.7 9.2E-06 2E-10 82.1 0.6 36 431-466 53-88 (590)
161 KOG1855 Predicted RNA-binding 97.7 5.5E-05 1.2E-09 76.6 5.9 89 65-153 207-308 (484)
162 COG5175 MOT2 Transcriptional r 97.7 0.0002 4.3E-09 70.3 8.8 110 89-201 114-241 (480)
163 KOG1995 Conserved Zn-finger pr 97.6 0.00014 3E-09 72.5 6.8 83 179-264 65-156 (351)
164 PF08777 RRM_3: RNA binding mo 97.6 0.00018 3.9E-09 60.8 6.4 59 90-154 2-60 (105)
165 PF11608 Limkain-b1: Limkain b 97.5 0.00027 5.9E-09 55.9 5.4 69 182-262 4-77 (90)
166 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00039 8.5E-09 51.0 5.4 52 90-148 2-53 (53)
167 KOG4307 RNA binding protein RB 97.3 0.00043 9.3E-09 74.0 7.0 75 90-167 868-942 (944)
168 PF08777 RRM_3: RNA binding mo 97.3 0.00032 6.9E-09 59.4 4.6 59 181-244 2-60 (105)
169 COG5175 MOT2 Transcriptional r 97.2 0.00042 9E-09 68.1 5.3 79 181-262 115-203 (480)
170 KOG0155 Transcription factor C 97.2 0.00026 5.6E-09 73.4 3.0 35 434-468 12-46 (617)
171 KOG1855 Predicted RNA-binding 97.2 0.00059 1.3E-08 69.3 5.5 69 177-245 228-310 (484)
172 KOG3259 Peptidyl-prolyl cis-tr 96.9 0.00037 8E-09 60.5 1.3 31 434-464 9-40 (163)
173 KOG2314 Translation initiation 96.8 0.0021 4.5E-08 67.5 6.1 76 181-258 59-140 (698)
174 KOG1996 mRNA splicing factor [ 96.7 0.0041 8.9E-08 60.3 6.7 68 193-263 299-368 (378)
175 KOG3152 TBP-binding protein, a 96.7 0.0014 2.9E-08 62.6 3.4 70 88-157 73-154 (278)
176 KOG2202 U2 snRNP splicing fact 96.6 0.0009 2E-08 63.9 1.5 64 195-261 83-147 (260)
177 KOG0115 RNA-binding protein p5 96.6 0.0018 3.9E-08 61.8 3.3 87 54-152 7-93 (275)
178 KOG2416 Acinus (induces apopto 96.5 0.0038 8.3E-08 66.0 5.7 80 86-171 441-521 (718)
179 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0032 6.9E-08 46.2 3.6 51 182-238 3-53 (53)
180 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.027 5.9E-07 47.0 7.5 77 89-169 6-89 (100)
181 KOG3152 TBP-binding protein, a 95.9 0.0035 7.6E-08 59.8 1.6 68 179-246 73-153 (278)
182 KOG2416 Acinus (induces apopto 95.8 0.0056 1.2E-07 64.8 2.5 80 178-262 442-522 (718)
183 PF10309 DUF2414: Protein of u 95.6 0.049 1.1E-06 41.1 6.5 54 90-151 6-62 (62)
184 KOG2202 U2 snRNP splicing fact 95.6 0.006 1.3E-07 58.5 1.9 62 104-169 83-145 (260)
185 KOG0155 Transcription factor C 95.6 0.013 2.9E-07 61.1 4.4 36 433-468 113-148 (617)
186 KOG1996 mRNA splicing factor [ 95.4 0.038 8.2E-07 53.8 6.6 65 103-170 300-365 (378)
187 KOG2193 IGF-II mRNA-binding pr 95.4 0.012 2.6E-07 59.9 3.2 78 181-266 2-80 (584)
188 PF08952 DUF1866: Domain of un 95.3 0.067 1.5E-06 47.5 7.2 55 105-171 52-106 (146)
189 PF07576 BRAP2: BRCA1-associat 95.3 0.26 5.6E-06 41.9 10.6 66 90-157 14-80 (110)
190 PF08675 RNA_bind: RNA binding 95.3 0.065 1.4E-06 42.6 6.2 54 92-153 11-64 (87)
191 KOG2068 MOT2 transcription fac 95.2 0.016 3.4E-07 57.8 3.5 80 90-172 78-163 (327)
192 PF05172 Nup35_RRM: Nup53/35/4 95.2 0.061 1.3E-06 44.9 6.3 75 181-260 7-90 (100)
193 KOG0150 Spliceosomal protein F 95.1 0.009 2E-07 58.5 1.3 37 433-469 150-186 (336)
194 PF08952 DUF1866: Domain of un 95.0 0.078 1.7E-06 47.1 6.7 57 195-262 51-107 (146)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.059 1.3E-06 50.1 6.3 83 87-169 5-95 (176)
196 PF15023 DUF4523: Protein of u 94.6 0.077 1.7E-06 46.5 5.6 74 177-260 83-160 (166)
197 KOG0804 Cytoplasmic Zn-finger 94.5 0.2 4.3E-06 51.9 9.1 69 87-157 72-141 (493)
198 PF10309 DUF2414: Protein of u 94.2 0.12 2.6E-06 39.0 5.2 55 180-241 5-62 (62)
199 KOG4676 Splicing factor, argin 94.1 0.042 9.1E-07 55.6 3.3 75 181-259 8-86 (479)
200 PF07576 BRAP2: BRCA1-associat 93.9 0.59 1.3E-05 39.8 9.4 77 182-259 15-92 (110)
201 KOG2068 MOT2 transcription fac 93.7 0.028 6E-07 56.2 1.2 79 181-262 78-163 (327)
202 KOG0804 Cytoplasmic Zn-finger 92.6 0.52 1.1E-05 48.9 8.3 81 179-260 73-154 (493)
203 KOG2591 c-Mpl binding protein, 92.4 1.9 4.2E-05 46.0 12.4 60 177-242 172-233 (684)
204 PF04847 Calcipressin: Calcipr 92.3 0.33 7.2E-06 45.3 6.1 61 193-261 8-70 (184)
205 KOG1924 RhoA GTPase effector D 92.2 0.69 1.5E-05 51.1 9.1 16 453-468 648-663 (1102)
206 PF08675 RNA_bind: RNA binding 91.6 0.5 1.1E-05 37.7 5.4 55 181-243 10-64 (87)
207 PF10567 Nab6_mRNP_bdg: RNA-re 91.5 4.9 0.00011 39.8 13.3 152 87-242 13-212 (309)
208 PF15023 DUF4523: Protein of u 91.4 0.54 1.2E-05 41.3 5.9 74 86-170 83-160 (166)
209 KOG2135 Proteins containing th 90.7 0.14 3.1E-06 53.1 2.2 60 193-261 386-445 (526)
210 KOG2591 c-Mpl binding protein, 90.7 0.7 1.5E-05 49.1 7.1 58 88-152 174-233 (684)
211 KOG1924 RhoA GTPase effector D 90.7 0.84 1.8E-05 50.5 7.8 11 141-151 209-219 (1102)
212 KOG2253 U1 snRNP complex, subu 90.6 0.055 1.2E-06 58.4 -1.0 111 86-206 37-161 (668)
213 PF11767 SET_assoc: Histone ly 90.6 1.1 2.5E-05 34.2 6.4 50 99-157 10-59 (66)
214 PF03467 Smg4_UPF3: Smg-4/UPF3 90.5 0.7 1.5E-05 42.9 6.3 82 180-261 7-97 (176)
215 KOG4574 RNA-binding protein (c 90.4 0.18 3.9E-06 55.9 2.6 74 91-171 300-373 (1007)
216 KOG2135 Proteins containing th 90.1 0.19 4.1E-06 52.3 2.3 76 88-173 371-447 (526)
217 KOG4285 Mitotic phosphoprotein 89.7 0.79 1.7E-05 45.2 6.1 69 91-169 199-267 (350)
218 PF04847 Calcipressin: Calcipr 89.4 1 2.3E-05 42.0 6.5 60 102-170 8-69 (184)
219 PF07292 NID: Nmi/IFP 35 domai 88.9 0.5 1.1E-05 38.4 3.5 68 134-201 1-73 (88)
220 KOG4574 RNA-binding protein (c 88.8 0.3 6.6E-06 54.2 2.9 74 183-262 301-374 (1007)
221 PF11767 SET_assoc: Histone ly 87.0 2.7 6E-05 32.2 6.3 49 191-247 11-59 (66)
222 KOG4592 Uncharacterized conser 86.7 11 0.00024 41.0 12.7 17 230-246 26-42 (728)
223 KOG0152 Spliceosomal protein F 85.7 0.15 3.3E-06 54.4 -1.5 36 432-467 124-159 (463)
224 KOG2318 Uncharacterized conser 82.5 3.3 7.1E-05 44.5 6.7 82 177-259 171-305 (650)
225 KOG2318 Uncharacterized conser 82.2 5 0.00011 43.2 7.8 83 86-169 171-305 (650)
226 PF03880 DbpA: DbpA RNA bindin 82.0 4.6 9.9E-05 31.6 5.9 59 190-259 11-74 (74)
227 PF03880 DbpA: DbpA RNA bindin 80.4 7.2 0.00016 30.5 6.5 59 99-169 11-74 (74)
228 KOG4285 Mitotic phosphoprotein 78.0 5.8 0.00013 39.3 6.2 69 185-262 202-270 (350)
229 COG5638 Uncharacterized conser 75.6 19 0.0004 37.3 9.2 40 85-124 142-186 (622)
230 KOG2253 U1 snRNP complex, subu 69.3 2.1 4.6E-05 46.7 1.0 72 177-259 37-108 (668)
231 KOG4483 Uncharacterized conser 66.9 15 0.00033 37.8 6.4 60 85-152 387-447 (528)
232 PF10567 Nab6_mRNP_bdg: RNA-re 63.5 16 0.00034 36.4 5.6 79 180-261 15-107 (309)
233 PF15513 DUF4651: Domain of un 62.1 15 0.00032 27.7 4.0 21 195-215 9-29 (62)
234 KOG2891 Surface glycoprotein [ 62.1 32 0.00068 33.8 7.3 82 133-214 77-195 (445)
235 KOG4019 Calcineurin-mediated s 58.7 5.4 0.00012 36.7 1.4 72 182-261 12-89 (193)
236 KOG4410 5-formyltetrahydrofola 57.8 14 0.0003 36.3 4.1 49 88-142 329-378 (396)
237 PF14111 DUF4283: Domain of un 56.3 13 0.00028 33.1 3.6 112 91-214 17-139 (153)
238 KOG2891 Surface glycoprotein [ 53.6 14 0.0003 36.2 3.4 71 86-156 146-247 (445)
239 PRK14548 50S ribosomal protein 52.6 43 0.00094 27.0 5.6 57 91-150 22-80 (84)
240 KOG2295 C2H2 Zn-finger protein 50.7 2.8 6E-05 44.8 -2.0 69 88-156 230-298 (648)
241 KOG4019 Calcineurin-mediated s 49.1 17 0.00037 33.5 3.1 76 89-172 10-90 (193)
242 KOG4410 5-formyltetrahydrofola 48.2 25 0.00054 34.6 4.2 47 181-232 331-378 (396)
243 KOG2236 Uncharacterized conser 47.6 69 0.0015 34.0 7.5 8 225-232 318-325 (483)
244 PF03468 XS: XS domain; Inter 47.1 12 0.00025 32.2 1.6 48 102-153 30-78 (116)
245 TIGR03636 L23_arch archaeal ri 47.0 59 0.0013 25.7 5.4 57 91-150 15-73 (77)
246 PF12905 Glyco_hydro_101: Endo 46.0 6.9 0.00015 40.8 0.0 24 443-466 382-405 (425)
247 KOG4274 Positive cofactor 2 (P 45.8 23 0.00051 38.2 3.9 20 222-241 39-58 (742)
248 COG5193 LHP1 La protein, small 45.0 10 0.00022 39.2 1.0 61 88-148 173-243 (438)
249 TIGR02542 B_forsyth_147 Bacter 44.8 21 0.00045 30.3 2.7 46 97-142 82-130 (145)
250 PF02714 DUF221: Domain of unk 44.5 39 0.00084 34.4 5.3 56 134-202 1-56 (325)
251 PF03468 XS: XS domain; Inter 43.8 11 0.00024 32.4 1.0 39 192-232 29-67 (116)
252 PRK11634 ATP-dependent RNA hel 43.0 2E+02 0.0043 32.5 11.0 62 190-262 497-563 (629)
253 TIGR02542 B_forsyth_147 Bacter 42.7 30 0.00066 29.3 3.3 110 97-231 11-129 (145)
254 KOG1295 Nonsense-mediated deca 42.3 37 0.0008 35.1 4.5 76 88-163 6-84 (376)
255 KOG2236 Uncharacterized conser 40.5 1.5E+02 0.0033 31.5 8.7 7 231-237 327-333 (483)
256 KOG3424 40S ribosomal protein 39.0 77 0.0017 27.1 5.2 47 99-146 33-84 (132)
257 PRK11901 hypothetical protein; 36.9 63 0.0014 32.8 5.1 55 188-244 250-307 (327)
258 PRK14548 50S ribosomal protein 36.1 76 0.0016 25.6 4.6 56 183-240 23-80 (84)
259 PF07530 PRE_C2HC: Associated 35.8 82 0.0018 24.2 4.6 63 104-172 2-65 (68)
260 KOG4213 RNA-binding protein La 35.7 45 0.00096 30.8 3.5 60 87-152 109-171 (205)
261 smart00564 PQQ beta-propeller 35.4 28 0.00061 21.8 1.7 21 440-460 12-32 (33)
262 PF07292 NID: Nmi/IFP 35 domai 34.1 21 0.00045 29.1 1.1 25 87-111 50-74 (88)
263 KOG4483 Uncharacterized conser 32.4 1.1E+02 0.0023 31.9 5.9 56 179-240 390-446 (528)
264 KOG4008 rRNA processing protei 30.8 33 0.00072 33.0 2.0 33 87-119 38-70 (261)
265 PF15513 DUF4651: Domain of un 30.7 90 0.0019 23.6 3.8 18 104-121 9-26 (62)
266 PF11498 Activator_LAG-3: Tran 30.7 17 0.00036 36.9 0.0 7 254-260 256-262 (468)
267 KOG1891 Proline binding protei 29.2 44 0.00095 31.9 2.5 30 434-463 96-125 (271)
268 PF11498 Activator_LAG-3: Tran 26.2 22 0.00048 36.0 0.0 7 348-354 361-367 (468)
269 KOG4274 Positive cofactor 2 (P 26.0 1.3E+02 0.0029 32.8 5.6 16 133-148 40-55 (742)
270 KOG2199 Signal transducing ada 25.3 60 0.0013 33.8 2.8 10 139-148 164-173 (462)
271 PRK10905 cell division protein 24.7 1.3E+02 0.0028 30.6 5.0 56 187-244 251-309 (328)
272 PF08544 GHMP_kinases_C: GHMP 24.3 2.2E+02 0.0049 21.9 5.6 44 104-152 37-80 (85)
273 KOG4365 Uncharacterized conser 24.2 16 0.00036 38.1 -1.3 66 90-156 4-69 (572)
274 PF03439 Spt5-NGN: Early trans 24.2 1.2E+02 0.0026 24.2 3.9 36 115-155 33-68 (84)
275 PTZ00191 60S ribosomal protein 23.4 2E+02 0.0043 25.8 5.4 55 91-148 83-139 (145)
276 KOG1295 Nonsense-mediated deca 23.2 82 0.0018 32.6 3.4 72 180-251 7-82 (376)
277 smart00596 PRE_C2HC PRE_C2HC d 22.7 1.6E+02 0.0035 22.7 4.1 63 104-172 2-65 (69)
278 PF11411 DNA_ligase_IV: DNA li 21.9 65 0.0014 21.5 1.5 16 99-114 19-34 (36)
279 KOG2295 C2H2 Zn-finger protein 21.0 23 0.00049 38.2 -1.1 68 179-246 230-298 (648)
280 CHL00030 rpl23 ribosomal prote 20.9 2.4E+02 0.0051 23.2 5.0 34 91-124 20-55 (93)
281 PRK05738 rplW 50S ribosomal pr 20.5 2.4E+02 0.0052 23.0 5.0 34 91-124 21-56 (92)
282 PF08734 GYD: GYD domain; Int 20.4 3.6E+02 0.0078 21.8 6.1 46 194-242 22-68 (91)
No 1
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.5e-42 Score=336.03 Aligned_cols=184 Identities=52% Similarity=0.844 Sum_probs=174.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
+....+||||-||+.++|+|||++|++||.|.+|.|++|+.||.++|||||.|.++++|.+|+.+|++...++|...+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCce
Q 009354 166 VRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTF 245 (537)
Q Consensus 166 v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 245 (537)
|++++.++++. ...++||||-|+..++|.||+++|++||.|++|+|++|+.+.+||||||+|.+++.|..||+.|||..
T Consensus 111 vk~Ad~E~er~-~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 111 VKYADGERERI-VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ecccchhhhcc-ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 99999988774 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCceEEEEEccCCCCCCCCCC
Q 009354 246 TMRGSDQPLVVRIADPKKPRTGELR 270 (537)
Q Consensus 246 ~~~g~g~~l~V~~a~~~~~~~~~~~ 270 (537)
.++||..+|.|+||++++++.++..
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~l 214 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRL 214 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHH
Confidence 9999999999999999988765443
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-39 Score=357.23 Aligned_cols=255 Identities=25% Similarity=0.367 Sum_probs=216.2
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~ 80 (537)
+||++.+|++.|++.|+.||+| |++..+..+. ++ +..+++|...++|.+|++.+||..+.+..+.+....+..
T Consensus 94 ~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~--sk---g~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 94 KNLDKSVDNKALFDTFSKFGNILSCKVATDENGK--SR---GYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred cCCCccCCHHHHHHHHHhcCCcceeEeeecCCCC--cc---cEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccc
Confidence 6899999999999999999999 7777665532 22 336789999999999999999999977766665433322
Q ss_pred CC-CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeec-
Q 009354 81 DH-INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP- 158 (537)
Q Consensus 81 ~~-~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~- 158 (537)
+. .......++|||+|||.++|+++|+++|+.||.|.+++++++. +|+++|||||+|.+.++|.+|++.|+|..+..
T Consensus 169 ~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~ 247 (562)
T TIGR01628 169 EREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLA 247 (562)
T ss_pred ccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEeccc
Confidence 22 1234456889999999999999999999999999999999996 79999999999999999999999999998720
Q ss_pred CCceeEEEeeccCCCCCC----------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcce
Q 009354 159 GEQASIKVRFADGEREHP----------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRG 222 (537)
Q Consensus 159 g~~~~l~v~~a~~~~~~~----------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g 222 (537)
..++.+.|.++..+.++. ....++|||+||++++++++|+++|++||.|.+|+|+.|.+|.++|
T Consensus 248 ~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g 327 (562)
T TIGR01628 248 KEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRG 327 (562)
T ss_pred ccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCC
Confidence 016788888876554331 2346789999999999999999999999999999999998899999
Q ss_pred EEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCCCCC
Q 009354 223 CAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 223 ~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
||||+|.+.++|.+|+..|||..+ +|++|.|.++..+..+.
T Consensus 328 ~gfV~f~~~~~A~~A~~~~~g~~~---~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 328 FGFVCFSNPEEANRAVTEMHGRML---GGKPLYVALAQRKEQRR 368 (562)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCee---CCceeEEEeccCcHHHH
Confidence 999999999999999999999988 89999999999876543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.3e-38 Score=327.19 Aligned_cols=250 Identities=25% Similarity=0.356 Sum_probs=214.5
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~ 80 (537)
|||+..+|+++|.++|+.||+| |+++.++... .+. +-.+++|...++|.+|++.+||..|.+..+++.|..+..
T Consensus 9 ~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g-~s~---g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~ 84 (352)
T TIGR01661 9 NYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTG-QSL---GYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS 84 (352)
T ss_pred eCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCC-ccc---eEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc
Confidence 7999999999999999999999 6666665431 122 346789999999999999999999988888888765432
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCC
Q 009354 81 DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160 (537)
Q Consensus 81 ~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~ 160 (537)
. ....++|||+|||.++++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|++||+.|+|..+ .|.
T Consensus 85 ~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~-~g~ 159 (352)
T TIGR01661 85 D----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTP-SGC 159 (352)
T ss_pred c----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCcc-CCC
Confidence 2 23457899999999999999999999999999999999988899999999999999999999999999865 455
Q ss_pred ceeEEEeeccCCCCCC----------------------------------------------------------------
Q 009354 161 QASIKVRFADGEREHP---------------------------------------------------------------- 176 (537)
Q Consensus 161 ~~~l~v~~a~~~~~~~---------------------------------------------------------------- 176 (537)
.+.|+|.++.......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 6788998875432100
Q ss_pred --------------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEc
Q 009354 177 --------------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFS 229 (537)
Q Consensus 177 --------------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~~g~afV~F~ 229 (537)
...+.+|||+||++++++++|+++|++||.|++++|++|. ++.++|||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 0012259999999999999999999999999999999995 8999999999999
Q ss_pred CHHHHHHHHHHcCCceEecCCCceEEEEEccCCCC
Q 009354 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264 (537)
Q Consensus 230 ~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~~ 264 (537)
+.++|.+||+.|||..+ +||.|+|.|...+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~---~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTL---GNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEE---CCeEEEEEEccCCCC
Confidence 99999999999999998 899999999988754
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-37 Score=287.33 Aligned_cols=211 Identities=23% Similarity=0.389 Sum_probs=184.9
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~ 80 (537)
|||+.-+||+.+..+|++.|.+ |||+.++.+ +.|.....
T Consensus 12 gnld~~vte~~i~~lf~qig~v~~~k~i~~e~~---------------------------------------v~wa~~p~ 52 (321)
T KOG0148|consen 12 GNLDSTVTEDFIATLFNQIGSVTKTKVIFDELK---------------------------------------VNWATAPG 52 (321)
T ss_pred eccChhhHHHHHHHHHHhccccccceeehhhhc---------------------------------------cccccCcc
Confidence 8999999999999999999999 999888554 12221111
Q ss_pred CCCC-CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecC
Q 009354 81 DHIN-DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG 159 (537)
Q Consensus 81 ~~~~-~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g 159 (537)
...+ .......+|||.|..+++.++|++.|.+||+|.+++|+||..|+++||||||.|.+.++|++||..|||..|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--- 129 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--- 129 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee---
Confidence 1111 112246799999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceeEEEeeccCCCCCC--------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEE
Q 009354 160 EQASIKVRFADGEREHP--------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAF 225 (537)
Q Consensus 160 ~~~~l~v~~a~~~~~~~--------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~af 225 (537)
..|.|+-.|+.++..+. ....|++||||++..++|++|++.|+.||.|.+|+|++ .+||+|
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-----~qGYaF 204 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-----DQGYAF 204 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-----ccceEE
Confidence 78999999998875433 34578999999999999999999999999999999999 589999
Q ss_pred EEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCC
Q 009354 226 VQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 226 V~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~ 263 (537)
|.|++.|+|.+||..+||..+ +|..+++.|.+...
T Consensus 205 VrF~tkEaAahAIv~mNntei---~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 205 VRFETKEAAAHAIVQMNNTEI---GGQLVRCSWGKEGD 239 (321)
T ss_pred EEecchhhHHHHHHHhcCcee---CceEEEEeccccCC
Confidence 999999999999999999999 89999999988643
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.7e-36 Score=332.96 Aligned_cols=251 Identities=20% Similarity=0.292 Sum_probs=214.2
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~~ 82 (537)
|||++.+|++.|++.|+.||+|.+|...++.. .....+-.++.|...++|++|++.+|+..+.+..+++.|+..++..
T Consensus 6 gnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~--t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~ 83 (562)
T TIGR01628 6 GDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV--TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSL 83 (562)
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccc
Confidence 89999999999999999999995555443321 1111134678999999999999999999998888899997665544
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009354 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 83 ~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
.. ....+|||+|||.++++++|+++|+.||.|++|+|+++. +|+++|||||+|.+.++|++||+.|+|..+ .++
T Consensus 84 ~~--~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~---~~~ 157 (562)
T TIGR01628 84 RR--SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL---NDK 157 (562)
T ss_pred cc--cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe---cCc
Confidence 32 234789999999999999999999999999999999986 899999999999999999999999999977 567
Q ss_pred eEEEeeccCCCCC---CCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHH
Q 009354 163 SIKVRFADGEREH---PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAIS 239 (537)
Q Consensus 163 ~l~v~~a~~~~~~---~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~ 239 (537)
.|.|.....+..+ .....++|||+||+.++++++|+++|+.||.|.++.++++.+|.++|||||+|.+.++|.+|++
T Consensus 158 ~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 158 EVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred eEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHH
Confidence 7888765544333 3445678999999999999999999999999999999999889999999999999999999999
Q ss_pred HcCCceEecCC----CceEEEEEccCCCC
Q 009354 240 GLNGTFTMRGS----DQPLVVRIADPKKP 264 (537)
Q Consensus 240 ~l~g~~~~~g~----g~~l~V~~a~~~~~ 264 (537)
.|+|..+ . ++.|.|.++..+..
T Consensus 238 ~l~g~~i---~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 238 EMNGKKI---GLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred HhCCcEe---cccccceeeEeecccChhh
Confidence 9999998 6 88999988765543
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.1e-35 Score=272.25 Aligned_cols=246 Identities=24% Similarity=0.372 Sum_probs=212.2
Q ss_pred CCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009354 5 VGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 5 ~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~~ 82 (537)
|+-.+|.+.+..+|+..|+| ||.+.|+-.. ...+-.++.|...++|++|+..|||..|-.+.+|+.+.+|+.+.
T Consensus 49 LPQ~MTqdE~rSLF~SiGeiEScKLvRDKitG----qSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~ 124 (360)
T KOG0145|consen 49 LPQNMTQDELRSLFGSIGEIESCKLVRDKITG----QSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS 124 (360)
T ss_pred cccccCHHHHHHHhhcccceeeeeeeeccccc----cccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhh
Confidence 67788999999999999999 7777766520 00022345555559999999999999999999999998887665
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009354 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 83 ~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
. ...+|||.+||+.+|..||+.+|++||.|...+|..|..||.+||.|||.|...++|+.||+.|||.. ..|..-
T Consensus 125 I----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~-P~g~te 199 (360)
T KOG0145|consen 125 I----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK-PSGCTE 199 (360)
T ss_pred h----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC-CCCCCC
Confidence 4 44679999999999999999999999999999999999999999999999999999999999999985 466778
Q ss_pred eEEEeeccCCCCCC-------------------------------------------------------------CCCCC
Q 009354 163 SIKVRFADGEREHP-------------------------------------------------------------VAPPD 181 (537)
Q Consensus 163 ~l~v~~a~~~~~~~-------------------------------------------------------------~~~~~ 181 (537)
+|.|.++....... .....
T Consensus 200 pItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ 279 (360)
T KOG0145|consen 200 PITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGW 279 (360)
T ss_pred CeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCee
Confidence 89999987542211 01246
Q ss_pred CcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEcc
Q 009354 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~ 260 (537)
+|||-||..+++|.-|..+|..||.|..|+|++| .+.+.+||+||++.+-++|..||..|||..+ ++|.|.|+|..
T Consensus 280 ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l---g~rvLQVsFKt 356 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL---GDRVLQVSFKT 356 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc---cceEEEEEEec
Confidence 8999999999999999999999999999999999 5689999999999999999999999999998 89999999987
Q ss_pred CC
Q 009354 261 PK 262 (537)
Q Consensus 261 ~~ 262 (537)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 65
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.5e-34 Score=289.24 Aligned_cols=174 Identities=32% Similarity=0.524 Sum_probs=156.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||+++||++|+++|+.||.|++|+|++|+.++++||||||+|.+.++|++||+.|++..+ ..+.|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---~gr~i 179 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV---RNKRL 179 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc---CCcee
Confidence 445679999999999999999999999999999999999999999999999999999999999999999988 67899
Q ss_pred EEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCC
Q 009354 165 KVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNG 243 (537)
Q Consensus 165 ~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g 243 (537)
+|.+++.... ....++|||+||+.++++++|+++|++||.|+.+.|++| .+++++|||||+|.+.++|++||+.||+
T Consensus 180 ~V~~a~p~~~--~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 180 KVSYARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eeeccccccc--ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 9999865433 234578999999999999999999999999999999998 5889999999999999999999999999
Q ss_pred ceEecCCCceEEEEEccCCCC
Q 009354 244 TFTMRGSDQPLVVRIADPKKP 264 (537)
Q Consensus 244 ~~~~~g~g~~l~V~~a~~~~~ 264 (537)
..+ .+.+++|+|.+++....
T Consensus 258 ~~~-~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 258 VIP-EGGSQPLTVRLAEEHGK 277 (346)
T ss_pred Ccc-CCCceeEEEEECCcccc
Confidence 876 33458999999987543
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.9e-33 Score=277.25 Aligned_cols=239 Identities=21% Similarity=0.335 Sum_probs=200.6
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~ 80 (537)
|+|+-.+.++.|..+|...|+| .+++.|+.. -.+.+-.++.|.+.+.|++|++.||+..|+ .++.++.+.+
T Consensus 89 GkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s----G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~S-- 161 (506)
T KOG0117|consen 89 GKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS----GDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVS-- 161 (506)
T ss_pred cCCCccccchhhHHHHHhccceeeEEEeecccC----CCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEe--
Confidence 7889999999999999999999 666666443 111134678899999999999999999995 4455555433
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeccCCC-CCCccceEEEEEccHHHHHHHHHHh-cCceee
Q 009354 81 DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGN-VIEVVLPKDKR-TGQQQGYCFVKFTIFEEAGNAIRAL-NGHYIF 157 (537)
Q Consensus 81 ~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~-tg~~kG~aFV~F~~~e~A~~Ai~~l-~g~~~~ 157 (537)
..+++|||||||++.++++|.+.|++.++ |++|.|..++. ..++||||||+|.+...|..|.+.| +|+.-+
T Consensus 162 ------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl 235 (506)
T KOG0117|consen 162 ------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL 235 (506)
T ss_pred ------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee
Confidence 34589999999999999999999999975 78888877664 3789999999999999999999776 455444
Q ss_pred cCCceeEEEeeccCCCCCC---CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHH
Q 009354 158 PGEQASIKVRFADGEREHP---VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMA 234 (537)
Q Consensus 158 ~g~~~~l~v~~a~~~~~~~---~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A 234 (537)
. +..+.|.|++.+.+.. ....+.|||+||+.++|++.|+++|++||.|+.|+.++| ||||.|.++++|
T Consensus 236 w--gn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~da 306 (506)
T KOG0117|consen 236 W--GNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDA 306 (506)
T ss_pred c--CCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHH
Confidence 3 4678999999876654 334678999999999999999999999999999988865 999999999999
Q ss_pred HHHHHHcCCceEecCCCceEEEEEccCCCCCC
Q 009354 235 LAAISGLNGTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 235 ~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
.+|++.+||+.+ +|..|.|.+|++...+.
T Consensus 307 vkAm~~~ngkel---dG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 307 VKAMKETNGKEL---DGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHhcCcee---cCceEEEEecCChhhhc
Confidence 999999999999 99999999999865443
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.8e-32 Score=291.48 Aligned_cols=236 Identities=23% Similarity=0.305 Sum_probs=190.9
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~ 80 (537)
|||+..+|++.|.+.|+.||.| |+++.|..+. ++ .-.++.|.+.|+|++|++.||+..|.. +..+.+..+
T Consensus 64 gnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~--sR---GfaFV~F~~~e~A~~Ai~~lng~~i~~-Gr~l~V~~S-- 135 (578)
T TIGR01648 64 GKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ--NR---GYAFVTFCGKEEAKEAVKLLNNYEIRP-GRLLGVCIS-- 135 (578)
T ss_pred CCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC--cc---ceEEEEeCCHHHHHHHHHHcCCCeecC-Ccccccccc--
Confidence 8999999999999999999999 6666663321 22 346789999999999999999988842 222222211
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEec-cCCCCCCccceEEEEEccHHHHHHHHHHhcCce-ee
Q 009354 81 DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGN-VIEVVLP-KDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY-IF 157 (537)
Q Consensus 81 ~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~-~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~-~~ 157 (537)
...++|||+|||.++++++|++.|++++. ++++.++ .+..+++++|||||+|.+.++|++|++.|+... .+
T Consensus 136 ------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l 209 (578)
T TIGR01648 136 ------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL 209 (578)
T ss_pred ------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe
Confidence 23589999999999999999999999864 4444443 333467899999999999999999998886432 23
Q ss_pred cCCceeEEEeeccCCCCCC---CCCCCCcccccCCcCCCHHHHHHHHcCC--CCeeEEEEEeecCCCcceEEEEEEcCHH
Q 009354 158 PGEQASIKVRFADGEREHP---VAPPDKLYVGCLSKQTSKKEIEEVFSPY--GHIEDIFIVRDELKQSRGCAFVQFSHRE 232 (537)
Q Consensus 158 ~g~~~~l~v~~a~~~~~~~---~~~~~~l~V~nl~~~~te~~L~~~F~~~--G~I~~v~i~~d~~g~~~g~afV~F~~~~ 232 (537)
.++.|+|.|+..+.... ....++|||+||+.++++++|+++|++| |.|++|.+++ +||||+|.+.+
T Consensus 210 --~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e 280 (578)
T TIGR01648 210 --WGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDRE 280 (578)
T ss_pred --cCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHH
Confidence 35789999988664432 2345789999999999999999999999 9999998764 59999999999
Q ss_pred HHHHHHHHcCCceEecCCCceEEEEEccCCCC
Q 009354 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264 (537)
Q Consensus 233 ~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~~ 264 (537)
+|++|++.|||..+ +|+.|+|.|++++..
T Consensus 281 ~A~kAi~~lnG~~i---~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 281 DAVKAMDELNGKEL---EGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHHHhCCCEE---CCEEEEEEEccCCCc
Confidence 99999999999998 899999999987643
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=6.9e-32 Score=289.92 Aligned_cols=240 Identities=16% Similarity=0.184 Sum_probs=196.4
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccc--cCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDF--FNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~--lng~~l~~~~~~~~~~~~~~ 80 (537)
|||++.+|++.|.++|+.||+|.++...+++ +..+++|...++|..|+.. +|+..|.+..+++.|+....
T Consensus 8 ~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k--------~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 8 RNLPQDVVEADLVEALIPFGPVSYVMMLPGK--------RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred cCCCCCCCHHHHHHHHHhcCCeeEEEEECCC--------CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 7999999999999999999999555544433 3568999999999999986 47778877777787764321
Q ss_pred -CCCC-------CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc
Q 009354 81 -DHIN-------DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 81 -~~~~-------~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
.... ......+|||+||++++|+++|+++|+.||.|++|+|+++.. +|+|||+|.+.++|.+|++.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Ln 155 (481)
T TIGR01649 80 IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALN 155 (481)
T ss_pred cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhc
Confidence 1111 112235899999999999999999999999999999987642 4799999999999999999999
Q ss_pred CceeecCCceeEEEeeccCCCC--------------------CC------------------------------------
Q 009354 153 GHYIFPGEQASIKVRFADGERE--------------------HP------------------------------------ 176 (537)
Q Consensus 153 g~~~~~g~~~~l~v~~a~~~~~--------------------~~------------------------------------ 176 (537)
|..|..+ .+.|+|.|++.... +.
T Consensus 156 g~~i~~~-~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 156 GADIYNG-CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred CCcccCC-ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 9988544 46778777653110 00
Q ss_pred -------------------------------------CCCCCCcccccCCc-CCCHHHHHHHHcCCCCeeEEEEEeecCC
Q 009354 177 -------------------------------------VAPPDKLYVGCLSK-QTSKKEIEEVFSPYGHIEDIFIVRDELK 218 (537)
Q Consensus 177 -------------------------------------~~~~~~l~V~nl~~-~~te~~L~~~F~~~G~I~~v~i~~d~~g 218 (537)
..+.++|||+||++ .+++++|+++|+.||.|.+|+|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--- 311 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--- 311 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---
Confidence 01346899999998 6999999999999999999999986
Q ss_pred CcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 219 QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 219 ~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
.+|||||+|.+.++|.+||+.|||..+ .|+.|+|.+++.+
T Consensus 312 -~~g~afV~f~~~~~A~~Ai~~lng~~l---~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 -KKETALIEMADPYQAQLALTHLNGVKL---FGKPLRVCPSKQQ 351 (481)
T ss_pred -CCCEEEEEECCHHHHHHHHHHhCCCEE---CCceEEEEEcccc
Confidence 479999999999999999999999998 7899999998754
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.6e-31 Score=285.42 Aligned_cols=242 Identities=16% Similarity=0.158 Sum_probs=192.9
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCc--ccccCCCC--
Q 009354 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIG--RKRGFNHP-- 78 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~--~~~~~~~~-- 78 (537)
+||+..+|++.|.++|+.||+|.+|...+++. .....++|...++|.+|++.|||..|.+.. +++.|+..
T Consensus 102 ~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~------~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 102 ENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN------VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred cCCCCCCCHHHHHHHHhccCCEEEEEEEecCC------ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 57888999999999999999997666544321 124789999999999999999999986531 11111110
Q ss_pred --------------CCCC--------------------------------------------------------------
Q 009354 79 --------------APDH-------------------------------------------------------------- 82 (537)
Q Consensus 79 --------------~~~~-------------------------------------------------------------- 82 (537)
.+..
T Consensus 176 l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
T TIGR01649 176 LNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY 255 (481)
T ss_pred ceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccc
Confidence 0000
Q ss_pred -------------CCCCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHH
Q 009354 83 -------------INDSGIPAKLYVAPVPR-TATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148 (537)
Q Consensus 83 -------------~~~~~~~~~LfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 148 (537)
......+++|||+||+. .+++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++||
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 256 EAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLAL 330 (481)
T ss_pred cccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 00012567999999997 69999999999999999999999874 589999999999999999
Q ss_pred HHhcCceeecCCceeEEEeeccCCCCC-----------------------------------CCCCCCCcccccCCcCCC
Q 009354 149 RALNGHYIFPGEQASIKVRFADGEREH-----------------------------------PVAPPDKLYVGCLSKQTS 193 (537)
Q Consensus 149 ~~l~g~~~~~g~~~~l~v~~a~~~~~~-----------------------------------~~~~~~~l~V~nl~~~~t 193 (537)
+.|||..| .++.|+|.+++..... ...+..+|||+|||.+++
T Consensus 331 ~~lng~~l---~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~t 407 (481)
T TIGR01649 331 THLNGVKL---FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVS 407 (481)
T ss_pred HHhCCCEE---CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCC
Confidence 99999988 5688999887542100 012356899999999999
Q ss_pred HHHHHHHHcCCCC--eeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc------eEEEEEccCC
Q 009354 194 KKEIEEVFSPYGH--IEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ------PLVVRIADPK 262 (537)
Q Consensus 194 e~~L~~~F~~~G~--I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~------~l~V~~a~~~ 262 (537)
+++|+++|+.||. |..|+++.+.++ .+++|||+|.+.++|.+||..|||..+ +++ .|+|+|++++
T Consensus 408 ee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l---~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 408 EEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQL---NEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCcc---CCCCCCccceEEEEeccCC
Confidence 9999999999998 888888765444 589999999999999999999999998 666 4999999764
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.1e-30 Score=277.36 Aligned_cols=171 Identities=23% Similarity=0.389 Sum_probs=154.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++||||||++++++++|+++|+.||.|.+|+|++|+.+|++||||||+|.+.++|++||+.|||..+ .++.|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i---~GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GGRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE---ecceeee
Confidence 3568999999999999999999999999999999999999999999999999999999999999999987 6788999
Q ss_pred eeccCCCCC---------CCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHH
Q 009354 167 RFADGEREH---------PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALA 236 (537)
Q Consensus 167 ~~a~~~~~~---------~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~ 236 (537)
.++...... .....++|||+||+.++++++|+++|+.||.|++++|.+| .++++||||||+|.+.++|.+
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 876532111 1224578999999999999999999999999999999999 467899999999999999999
Q ss_pred HHHHcCCceEecCCCceEEEEEccCCC
Q 009354 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 237 Ai~~l~g~~~~~g~g~~l~V~~a~~~~ 263 (537)
||+.||+..+ +|+.|+|.++..+.
T Consensus 262 AI~amNg~el---gGr~LrV~kAi~pP 285 (612)
T TIGR01645 262 AIASMNLFDL---GGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHhCCCee---CCeEEEEEecCCCc
Confidence 9999999998 89999999988643
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.6e-29 Score=262.24 Aligned_cols=170 Identities=36% Similarity=0.576 Sum_probs=154.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
+..+|||+|||.+++|++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|++||+.|+|..| .++.|+|.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---~g~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---QNKTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE---CCeeEEEE
Confidence 358999999999999999999999999999999999999999999999999999999999999999987 67899999
Q ss_pred eccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceE
Q 009354 168 FADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFT 246 (537)
Q Consensus 168 ~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~ 246 (537)
+++.... ....++|||+||+..+++++|+++|+.||.|..+.++.+ .++.++|||||+|.+.++|.+||+.|||..+
T Consensus 79 ~a~~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~ 156 (352)
T TIGR01661 79 YARPSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTP 156 (352)
T ss_pred eeccccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCcc
Confidence 9875543 234678999999999999999999999999999999988 4678999999999999999999999999875
Q ss_pred ecCCCceEEEEEccCCC
Q 009354 247 MRGSDQPLVVRIADPKK 263 (537)
Q Consensus 247 ~~g~g~~l~V~~a~~~~ 263 (537)
.|.++.|.|.|+..+.
T Consensus 157 -~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 157 -SGCTEPITVKFANNPS 172 (352)
T ss_pred -CCCceeEEEEECCCCC
Confidence 4456789999987654
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=1.3e-29 Score=275.60 Aligned_cols=244 Identities=19% Similarity=0.228 Sum_probs=191.3
Q ss_pred CCCCCCCCCccccccCCCCCC------------ccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCc
Q 009354 3 GHVGEYITDPPEFNPNSFSGN------------YCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIG 70 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~------------i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~ 70 (537)
|||+..+|++.|.+.|+.++. |..+...+.+ +-.+|+|.+.+.|..|+ .|||..+.+..
T Consensus 181 gnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~k--------g~afVeF~~~e~A~~Al-~l~g~~~~g~~ 251 (509)
T TIGR01642 181 GGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEK--------NFAFLEFRTVEEATFAM-ALDSIIYSNVF 251 (509)
T ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCC--------CEEEEEeCCHHHHhhhh-cCCCeEeeCce
Confidence 899999999999999987522 2222222221 34679999999999999 59998887766
Q ss_pred ccccCCCCC---C-----------C-----------CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCC
Q 009354 71 RKRGFNHPA---P-----------D-----------HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDK 125 (537)
Q Consensus 71 ~~~~~~~~~---~-----------~-----------~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 125 (537)
+++.+.... + . ........++|||+|||.++++++|+++|+.||.|..+.|++++
T Consensus 252 l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~ 331 (509)
T TIGR01642 252 LKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI 331 (509)
T ss_pred eEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence 665432110 0 0 00012345899999999999999999999999999999999999
Q ss_pred CCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCC--------------------------CCC
Q 009354 126 RTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------------------------VAP 179 (537)
Q Consensus 126 ~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~--------------------------~~~ 179 (537)
.+|.++|||||+|.+.++|..||+.|+|..| .++.|.|.++....... ..+
T Consensus 332 ~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (509)
T TIGR01642 332 ATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---GDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKP 408 (509)
T ss_pred CCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCC
Confidence 9999999999999999999999999999988 56788888874321110 123
Q ss_pred CCCcccccCCcC--C--------CHHHHHHHHcCCCCeeEEEEEeec----CCCcceEEEEEEcCHHHHHHHHHHcCCce
Q 009354 180 PDKLYVGCLSKQ--T--------SKKEIEEVFSPYGHIEDIFIVRDE----LKQSRGCAFVQFSHREMALAAISGLNGTF 245 (537)
Q Consensus 180 ~~~l~V~nl~~~--~--------te~~L~~~F~~~G~I~~v~i~~d~----~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 245 (537)
..+|+|.|+... + ..++|+++|++||.|+.|.|+++. .+...|++||+|.+.++|.+|+..|||..
T Consensus 409 s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 409 TKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred ceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCE
Confidence 567888888532 1 236899999999999999998752 34567999999999999999999999999
Q ss_pred EecCCCceEEEEEccC
Q 009354 246 TMRGSDQPLVVRIADP 261 (537)
Q Consensus 246 ~~~g~g~~l~V~~a~~ 261 (537)
+ +|+.|.|.|...
T Consensus 489 ~---~gr~v~~~~~~~ 501 (509)
T TIGR01642 489 F---NDRVVVAAFYGE 501 (509)
T ss_pred E---CCeEEEEEEeCH
Confidence 8 899999999765
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.3e-29 Score=270.00 Aligned_cols=246 Identities=21% Similarity=0.276 Sum_probs=194.9
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~ 80 (537)
|||+..+|+..|.+.|+.||+| +.++.++.. ..+ .+..+++|...++|.+|+. ++|..+.+..+.+.+.....
T Consensus 95 ~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~---~~s-kg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~ 169 (457)
T TIGR01622 95 LQLALKARERDLYEFFSKVGKVRDVQCIKDRNS---RRS-KGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEK 169 (457)
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCc-ceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhh
Confidence 7999999999999999999999 555544332 111 1346889999999999986 88888877666655432211
Q ss_pred C--------CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc
Q 009354 81 D--------HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 81 ~--------~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
. ........++|||+|||.++++++|+++|+.||.|..|.|++++.+|+++|||||+|.+.++|.+|++.|+
T Consensus 170 ~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~ 249 (457)
T TIGR01622 170 NRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMN 249 (457)
T ss_pred hhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcC
Confidence 0 00111236899999999999999999999999999999999999899999999999999999999999999
Q ss_pred CceeecCCceeEEEeeccCCCCC---------------------------------------------------------
Q 009354 153 GHYIFPGEQASIKVRFADGEREH--------------------------------------------------------- 175 (537)
Q Consensus 153 g~~~~~g~~~~l~v~~a~~~~~~--------------------------------------------------------- 175 (537)
|..| .++.|+|.++......
T Consensus 250 g~~i---~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (457)
T TIGR01622 250 GFEL---AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQ 326 (457)
T ss_pred CcEE---CCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccc
Confidence 9877 6789999995421000
Q ss_pred -------------------------------CCCCCCCcccccCCcCCC----------HHHHHHHHcCCCCeeEEEEEe
Q 009354 176 -------------------------------PVAPPDKLYVGCLSKQTS----------KKEIEEVFSPYGHIEDIFIVR 214 (537)
Q Consensus 176 -------------------------------~~~~~~~l~V~nl~~~~t----------e~~L~~~F~~~G~I~~v~i~~ 214 (537)
......+|+|.||....+ .+||++.|++||.|+.|.|..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~ 406 (457)
T TIGR01622 327 RDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT 406 (457)
T ss_pred ccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC
Confidence 001235577777754433 378999999999999999874
Q ss_pred ecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 215 DELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 215 d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
. ...|++||+|.+.++|.+|++.|||+.+ +|+.|.|.|....
T Consensus 407 ~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f---~gr~i~~~~~~~~ 448 (457)
T TIGR01622 407 K---NSAGKIYLKFSSVDAALAAFQALNGRYF---GGKMITAAFVVND 448 (457)
T ss_pred C---CCceeEEEEECCHHHHHHHHHHhcCccc---CCeEEEEEEEcHH
Confidence 3 3679999999999999999999999998 8999999998643
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-29 Score=259.73 Aligned_cols=249 Identities=24% Similarity=0.399 Sum_probs=216.1
Q ss_pred CCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCC
Q 009354 4 HVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPD 81 (537)
Q Consensus 4 ~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~ 81 (537)
||++.||++.|++.|+.||+| |+|.+++++. .+++++|+..+.|.+|++.+||..+.++.+.++......+
T Consensus 83 nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~-------kg~FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 83 NLDESIDNKSLYDTFSEFGNILSCKVATDENGS-------KGYFVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred CCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCc-------eeeEEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 899999999999999999999 9999999982 3348999999999999999999999888877765443222
Q ss_pred CC----CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceee
Q 009354 82 HI----NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIF 157 (537)
Q Consensus 82 ~~----~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~ 157 (537)
+. ........+||.|++.++++++|.++|..||+|.++.++.+. .|+++|||||.|.+.++|..|++.|++..+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~- 233 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIF- 233 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcC-
Confidence 21 133456889999999999999999999999999999999996 788999999999999999999999999977
Q ss_pred cCCceeEEEeeccCCCCCC----------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcc
Q 009354 158 PGEQASIKVRFADGEREHP----------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSR 221 (537)
Q Consensus 158 ~g~~~~l~v~~a~~~~~~~----------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~ 221 (537)
....+.|..+..+.++. .....+|||.|++..++.+.|++.|+.||.|..++|+.+..|.++
T Consensus 234 --~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~sk 311 (369)
T KOG0123|consen 234 --GDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSK 311 (369)
T ss_pred --CccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCcc
Confidence 45677777776532221 234678999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCCCCC
Q 009354 222 GCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 222 g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
||+||+|.+.++|.+|+..+|+..+ +++.|.|.++..+..+.
T Consensus 312 G~gfV~fs~~eeA~~A~~~~n~~~i---~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 312 GFGFVEFSSPEEAKKAMTEMNGRLI---GGKPLYVAVAQRKEDRR 353 (369)
T ss_pred ceEEEEcCCHHHHHHHHHhhChhhh---cCCchhhhHHhhhccch
Confidence 9999999999999999999999998 89999999998554443
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=241.89 Aligned_cols=207 Identities=26% Similarity=0.426 Sum_probs=175.0
Q ss_pred cchhhcccccccccCCcccCCCcccccCCCCCCCCCC-CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCC
Q 009354 48 YQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHIN-DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKR 126 (537)
Q Consensus 48 ~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~~~~-~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~ 126 (537)
+..+|+|.+++.+-.|..|......+++..+.+.... .....+.||||.||.++.|++|..+|++.|+|-+++||.|+.
T Consensus 41 ~~~~eaal~al~E~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~ 120 (506)
T KOG0117|consen 41 VQSEEAALKALLERTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF 120 (506)
T ss_pred cccHHHHHHHHHHhcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc
Confidence 3336788888888888888766667777666665432 234579999999999999999999999999999999999999
Q ss_pred CCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCC
Q 009354 127 TGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH 206 (537)
Q Consensus 127 tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~ 206 (537)
+|.+||||||.|.+.++|++||+.||+.+|..| +.|.|..+- ..|+|||||||.++++++|.+.|++.++
T Consensus 121 sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G--K~igvc~Sv--------an~RLFiG~IPK~k~keeIlee~~kVte 190 (506)
T KOG0117|consen 121 SGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG--KLLGVCVSV--------ANCRLFIGNIPKTKKKEEILEEMKKVTE 190 (506)
T ss_pred CCCCcceEEEEeecHHHHHHHHHHhhCccccCC--CEeEEEEee--------ecceeEeccCCccccHHHHHHHHHhhCC
Confidence 999999999999999999999999999999755 667776653 3589999999999999999999999886
Q ss_pred -eeEEEEEee--cCCCcceEEEEEEcCHHHHHHHHHHc-CCceEecCCCceEEEEEccCCCCCC
Q 009354 207 -IEDIFIVRD--ELKQSRGCAFVQFSHREMALAAISGL-NGTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 207 -I~~v~i~~d--~~g~~~g~afV~F~~~~~A~~Ai~~l-~g~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
|++|.|..+ ++.++||||||+|.|+..|..|.++| ++++-++ |..+.|.||+++....
T Consensus 191 GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw--gn~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 191 GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW--GNAITVDWAEPEEEPD 252 (506)
T ss_pred CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeec--CCcceeeccCcccCCC
Confidence 888888876 46789999999999999999998766 4666664 5889999999876543
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4e-28 Score=245.64 Aligned_cols=251 Identities=20% Similarity=0.298 Sum_probs=197.3
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCC--
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHP-- 78 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~-- 78 (537)
++|+--+|+..|.+.||.+|.| |.|..+... +...+-.++.|...|++.+|+..+++..+.+..+++.....
T Consensus 11 ~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs----~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~ 86 (678)
T KOG0127|consen 11 SRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGS----SEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRA 86 (678)
T ss_pred ecCCCccchhHHHHhhhcccCcceeEEecCCCc----ccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccc
Confidence 5789999999999999999999 988887664 11212345677777888888876665555444333322111
Q ss_pred C--------------------CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEE
Q 009354 79 A--------------------PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKF 138 (537)
Q Consensus 79 ~--------------------~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F 138 (537)
. +....-..+.-+|.|+|||+.+.+.+|+.+|+.||.|.+|.|.+.+ .|+-.|||||.|
T Consensus 87 r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~f 165 (678)
T KOG0127|consen 87 RSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQF 165 (678)
T ss_pred cchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEE
Confidence 0 0000112236789999999999999999999999999999999877 455559999999
Q ss_pred ccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCC------------------------------------------
Q 009354 139 TIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP------------------------------------------ 176 (537)
Q Consensus 139 ~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~------------------------------------------ 176 (537)
....+|++||+.+||..| .+|+|.|.|+-.+....
T Consensus 166 k~~~dA~~Al~~~N~~~i---~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ede 242 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKI---DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDE 242 (678)
T ss_pred eeHHHHHHHHHhccCcee---cCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccc
Confidence 999999999999999998 78999999983220000
Q ss_pred ----------------------------------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEE
Q 009354 177 ----------------------------------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210 (537)
Q Consensus 177 ----------------------------------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v 210 (537)
.....+|||+||++++++++|.++|++||.|.++
T Consensus 243 Ee~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya 322 (678)
T KOG0127|consen 243 EETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYA 322 (678)
T ss_pred ccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeE
Confidence 0013689999999999999999999999999999
Q ss_pred EEEee-cCCCcceEEEEEEcCHHHHHHHHHHc-----CCceEecCCCceEEEEEccCCC
Q 009354 211 FIVRD-ELKQSRGCAFVQFSHREMALAAISGL-----NGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 211 ~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l-----~g~~~~~g~g~~l~V~~a~~~~ 263 (537)
.|+.+ .++.++|.|||.|.+..+|.+||+.. .|.+++ +||.|.|..+-.++
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll--~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL--DGRLLKVTLAVTRK 379 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE--eccEEeeeeccchH
Confidence 99999 68999999999999999999999987 343444 78999999987654
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=6.7e-28 Score=258.11 Aligned_cols=161 Identities=18% Similarity=0.230 Sum_probs=134.8
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~ 80 (537)
|||+..+|++.|.+.|+.||+| ++++.|+... .++ +-.+++|...++|.+|++.+||..|.+..+++++....+
T Consensus 113 GnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tg-ksk---GfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p 188 (612)
T TIGR01645 113 GSISFELREDTIRRAFDPFGPIKSINMSWDPATG-KHK---GFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMP 188 (612)
T ss_pred cCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCC-CcC---CeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccc
Confidence 8999999999999999999999 5555554421 122 336789999999999999999999988877776543221
Q ss_pred CC-------CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcC
Q 009354 81 DH-------INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG 153 (537)
Q Consensus 81 ~~-------~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g 153 (537)
.. .......++|||+||+.++++++|+++|+.||.|++|+|.+|+.+|++||||||+|.+.++|.+||+.||+
T Consensus 189 ~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg 268 (612)
T TIGR01645 189 QAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL 268 (612)
T ss_pred ccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC
Confidence 11 12233568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCceeEEEeecc
Q 009354 154 HYIFPGEQASIKVRFAD 170 (537)
Q Consensus 154 ~~~~~g~~~~l~v~~a~ 170 (537)
..| +++.|+|.++.
T Consensus 269 ~el---gGr~LrV~kAi 282 (612)
T TIGR01645 269 FDL---GGQYLRVGKCV 282 (612)
T ss_pred Cee---CCeEEEEEecC
Confidence 987 67889988765
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1e-28 Score=253.16 Aligned_cols=240 Identities=25% Similarity=0.377 Sum_probs=211.2
Q ss_pred CCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCCCC
Q 009354 5 VGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHIN 84 (537)
Q Consensus 5 ~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~~~~ 84 (537)
+++.+|++.|++.|+.+|.+.++..+++- . ..+..++.|...++|++|++.+|...+.++.+++.|+..++..
T Consensus 6 vg~~v~e~~l~~~f~~~~~v~s~rvc~d~-t----slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~-- 78 (369)
T KOG0123|consen 6 VGPDVTEAMLFDKFSPAGPVLSIRVCRDA-T----SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL-- 78 (369)
T ss_pred cCCcCChHHHHHHhcccCCceeEEEeecC-C----ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce--
Confidence 34788999999999999999777776663 2 2356788999999999999999999999999999998776555
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
|||.||+++++..+|+++|+.||.|++|+|..|. .| ++|| ||+|+++++|++||+.|||..+ .++.|
T Consensus 79 -------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll---~~kki 145 (369)
T KOG0123|consen 79 -------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLL---NGKKI 145 (369)
T ss_pred -------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCccc---CCCee
Confidence 9999999999999999999999999999999996 56 9999 9999999999999999999977 56778
Q ss_pred EEeeccCCCCCC------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHH
Q 009354 165 KVRFADGEREHP------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAI 238 (537)
Q Consensus 165 ~v~~a~~~~~~~------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai 238 (537)
.|.....+.++. ......+||.++..+++++.|.++|..||.|..+.++.+..+.+++|+||.|.+.++|..|+
T Consensus 146 ~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av 225 (369)
T KOG0123|consen 146 YVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAV 225 (369)
T ss_pred EEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHH
Confidence 887776654433 23457899999999999999999999999999999999988889999999999999999999
Q ss_pred HHcCCceEecCCCceEEEEEccCCCCCCC
Q 009354 239 SGLNGTFTMRGSDQPLVVRIADPKKPRTG 267 (537)
Q Consensus 239 ~~l~g~~~~~g~g~~l~V~~a~~~~~~~~ 267 (537)
+.|++..+ ++..+.|..+..+..+..
T Consensus 226 ~~l~~~~~---~~~~~~V~~aqkk~e~~~ 251 (369)
T KOG0123|consen 226 ETLNGKIF---GDKELYVGRAQKKSEREA 251 (369)
T ss_pred HhccCCcC---CccceeecccccchhhHH
Confidence 99999998 789999998887554443
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.4e-28 Score=226.61 Aligned_cols=172 Identities=35% Similarity=0.561 Sum_probs=159.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
++...+|.|.-||.++|+|+|+.+|...|+|++|++++|+.+|.+.|||||.|.+++||++||..|||..+ ..+.|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL---Q~KTIK 114 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---QNKTIK 114 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee---ccceEE
Confidence 44568899999999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred EeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCc
Q 009354 166 VRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGT 244 (537)
Q Consensus 166 v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 244 (537)
|++++..... -...+|||.+||...|..||+.+|+.||.|..-+|..| -+|.+||++||.|..+++|+.||..|||.
T Consensus 115 VSyARPSs~~--Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 115 VSYARPSSDS--IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred EEeccCChhh--hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 9999876553 35678999999999999999999999999999999888 58999999999999999999999999998
Q ss_pred eEecCCCceEEEEEccCCC
Q 009354 245 FTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 245 ~~~~g~g~~l~V~~a~~~~ 263 (537)
. -.|+..+|.|+|+....
T Consensus 193 ~-P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 193 K-PSGCTEPITVKFANNPS 210 (360)
T ss_pred C-CCCCCCCeEEEecCCcc
Confidence 8 56788999999998764
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=9.6e-29 Score=244.04 Aligned_cols=254 Identities=20% Similarity=0.309 Sum_probs=208.8
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCC-cccCCCcccccCCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNG-QPMPFIGRKRGFNHPAPD 81 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng-~~l~~~~~~~~~~~~~~~ 81 (537)
|-++.-.+|++|..+|.+||++..|...+++.. .-+. .-=++.|...++|.+|+..++. +.|++...-+.....+.+
T Consensus 40 gqIprt~sE~dlr~lFe~yg~V~einl~kDk~t-~~s~-gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E 117 (510)
T KOG0144|consen 40 GQIPRTASEKDLRELFEKYGNVYEINLIKDKST-GQSK-GCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGE 117 (510)
T ss_pred ccCCccccHHHHHHHHHHhCceeEEEeeccccc-Cccc-ceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchh
Confidence 567777899999999999999944444444321 1111 1134567777889998887665 556666444444334444
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009354 82 HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 82 ~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
++ .....++||||-|++.+||.|++++|.+||.|++|.|++|. .|.+||||||+|++.|.|..||+.|||...+.|..
T Consensus 118 ~e-r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs 195 (510)
T KOG0144|consen 118 RE-RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCS 195 (510)
T ss_pred hh-ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCC
Confidence 42 22446899999999999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred eeEEEeeccCCCCCCC----------------------------------------------------------------
Q 009354 162 ASIKVRFADGEREHPV---------------------------------------------------------------- 177 (537)
Q Consensus 162 ~~l~v~~a~~~~~~~~---------------------------------------------------------------- 177 (537)
.+|.|+|++.++.+..
T Consensus 196 ~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~q 275 (510)
T KOG0144|consen 196 QPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQ 275 (510)
T ss_pred CceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHH
Confidence 9999999987655430
Q ss_pred --------------------------------------------------------------------------------
Q 009354 178 -------------------------------------------------------------------------------- 177 (537)
Q Consensus 178 -------------------------------------------------------------------------------- 177 (537)
T Consensus 276 q~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~ 355 (510)
T KOG0144|consen 276 QAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAG 355 (510)
T ss_pred HHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccccccc
Confidence
Q ss_pred ------------------------------------------------------------------CCCCCcccccCCcC
Q 009354 178 ------------------------------------------------------------------APPDKLYVGCLSKQ 191 (537)
Q Consensus 178 ------------------------------------------------------------------~~~~~l~V~nl~~~ 191 (537)
....+|||.+||.+
T Consensus 356 ~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqe 435 (510)
T KOG0144|consen 356 TTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQE 435 (510)
T ss_pred ccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchh
Confidence 01567999999999
Q ss_pred CCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCC
Q 009354 192 TSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 192 ~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~ 263 (537)
.-+.||...|..||.|...+++.| .++-+++|+||.|++.-+|..||..|||..+ +.+.|+|.....+.
T Consensus 436 fgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQi---g~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 436 FGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQI---GSKRLKVQLKRDRN 505 (510)
T ss_pred hhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhh---ccccceEEeeeccC
Confidence 999999999999999999999999 6899999999999999999999999999998 88999999876543
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.9e-27 Score=255.28 Aligned_cols=170 Identities=29% Similarity=0.471 Sum_probs=151.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|++|| .|+|..+ .++.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~---~g~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQML---LGRPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEE---CCeeeE
Confidence 445789999999999999999999999999999999999999999999999999999999999 6999987 567888
Q ss_pred EeeccCCCCCC----------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHH
Q 009354 166 VRFADGEREHP----------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMA 234 (537)
Q Consensus 166 v~~a~~~~~~~----------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A 234 (537)
|.++..+.... ....++|||+||+..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 87765432221 122578999999999999999999999999999999998 4668999999999999999
Q ss_pred HHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 235 LAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 235 ~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
.+|++.|+|..+ .|+.|.|.|+...
T Consensus 242 ~~A~~~l~g~~i---~g~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFEL---AGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcEE---CCEEEEEEEccCC
Confidence 999999999887 7999999998743
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.6e-27 Score=254.97 Aligned_cols=201 Identities=28% Similarity=0.435 Sum_probs=165.6
Q ss_pred hhhcccccccccCCcccCCCcccccCCCCCCCCCC-CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCC
Q 009354 50 YDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHIN-DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128 (537)
Q Consensus 50 ~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~~~~-~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg 128 (537)
-.|.|.+|+..++|..+......+.+..+.+.... .....++|||+|||++++|++|+++|++||.|.+|+|++| .+|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC
Confidence 35788899999999999877777777665544321 2345699999999999999999999999999999999999 699
Q ss_pred CccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCC-e
Q 009354 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH-I 207 (537)
Q Consensus 129 ~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~-I 207 (537)
++||||||+|.+.++|++||+.||+..+..+ +.|.|.++. ..++|||+|||.++++++|.++|++++. +
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G--r~l~V~~S~--------~~~rLFVgNLP~~~TeeeL~eeFskv~egv 166 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG--RLLGVCISV--------DNCRLFVGGIPKNKKREEILEEFSKVTEGV 166 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCC--ccccccccc--------cCceeEeecCCcchhhHHHHHHhhcccCCc
Confidence 9999999999999999999999999987544 556665543 3578999999999999999999999864 5
Q ss_pred eEEEEEee--cCCCcceEEEEEEcCHHHHHHHHHHcCCce-EecCCCceEEEEEccCCC
Q 009354 208 EDIFIVRD--ELKQSRGCAFVQFSHREMALAAISGLNGTF-TMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 208 ~~v~i~~d--~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-~~~g~g~~l~V~~a~~~~ 263 (537)
+++.++.. ..++++|||||+|.+.++|.+|++.|+... .+ .++.|.|.|+.++.
T Consensus 167 v~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l--~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 167 VDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHVIAVDWAEPEE 223 (578)
T ss_pred eEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe--cCceEEEEeecccc
Confidence 55544433 456789999999999999999999886432 23 57999999998753
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=211.97 Aligned_cols=172 Identities=30% Similarity=0.478 Sum_probs=156.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
+...+||||||+..++++.|+++|-+.|+|+++.+.+|+.+...+|||||+|.++|+|+-|++-||...+ -+++|+|
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL---YgrpIrv 83 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL---YGRPIRV 83 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh---cCceeEE
Confidence 4468999999999999999999999999999999999999999999999999999999999999998877 5689999
Q ss_pred eeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeE-EEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCc
Q 009354 167 RFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED-IFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGT 244 (537)
Q Consensus 167 ~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~-v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 244 (537)
..+. ..........+|||+||+++++|..|.+.|+.||.|.. -.|+++ .+|..+|||||.|.+.+.+.+|+..+||.
T Consensus 84 ~kas-~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 84 NKAS-AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred Eecc-cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 9998 33444556689999999999999999999999999765 588998 56889999999999999999999999999
Q ss_pred eEecCCCceEEEEEccCCCCC
Q 009354 245 FTMRGSDQPLVVRIADPKKPR 265 (537)
Q Consensus 245 ~~~~g~g~~l~V~~a~~~~~~ 265 (537)
.+ +++++.|.++..+..+
T Consensus 163 ~l---~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 163 YL---CNRPITVSYAFKKDTK 180 (203)
T ss_pred hh---cCCceEEEEEEecCCC
Confidence 98 8999999999876543
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8e-25 Score=221.82 Aligned_cols=169 Identities=26% Similarity=0.393 Sum_probs=154.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009354 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
..||||++||+.++.++|.++|+.+|+|..|.++.++.++.+||||||.|.-.+|+.+|+..++++.+ .++.|+|..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf---~Gr~l~v~~ 81 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF---EGRILNVDP 81 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc---cceeccccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999887 778899988
Q ss_pred ccCCCCCC------------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEE
Q 009354 169 ADGEREHP------------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCA 224 (537)
Q Consensus 169 a~~~~~~~------------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~a 224 (537)
+..+.... ..+..+|.|+|||+.+.+.+|+.+|+.||.|..|.|.+...|+-.|||
T Consensus 82 A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFa 161 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFA 161 (678)
T ss_pred ccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceE
Confidence 86542211 122568999999999999999999999999999999998888888999
Q ss_pred EEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCC
Q 009354 225 FVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 225 fV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~ 263 (537)
||.|.+..+|.+|++.||+..| +||+|-|.||-.+.
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~i---~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNKI---DGRPVAVDWAVDKD 197 (678)
T ss_pred EEEEeeHHHHHHHHHhccCcee---cCceeEEeeecccc
Confidence 9999999999999999999999 89999999997764
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=6.5e-24 Score=230.95 Aligned_cols=165 Identities=25% Similarity=0.421 Sum_probs=138.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEH------------GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~------------G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
.....++|||||||.++|+++|+++|..| +.|..+.+ ++.+|||||+|.+.++|..|| .|+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCC
Confidence 34567999999999999999999999975 23444444 345789999999999999999 699
Q ss_pred CceeecCCceeEEEeeccCCCCC---------------------------CCCCCCCcccccCCcCCCHHHHHHHHcCCC
Q 009354 153 GHYIFPGEQASIKVRFADGEREH---------------------------PVAPPDKLYVGCLSKQTSKKEIEEVFSPYG 205 (537)
Q Consensus 153 g~~~~~g~~~~l~v~~a~~~~~~---------------------------~~~~~~~l~V~nl~~~~te~~L~~~F~~~G 205 (537)
|..+ .++.|+|......... .....++|||+|||..+++++|+++|+.||
T Consensus 244 g~~~---~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 244 SIIY---SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred CeEe---eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 9877 5578888754322100 012346899999999999999999999999
Q ss_pred CeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 206 HIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 206 ~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
.|..+.|+++ .+|.++|||||+|.+.++|.+||+.|+|..+ +|+.|.|.++...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---~~~~l~v~~a~~~ 375 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---GDNKLHVQRACVG 375 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEECccC
Confidence 9999999998 5888999999999999999999999999998 7999999998753
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=205.08 Aligned_cols=149 Identities=34% Similarity=0.539 Sum_probs=139.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
.+|||||||.++++.+|+.+|++||.|++|.|+++ ||||+.++...|+.||+.|+|-.| .+..|+|..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL---hg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL---HGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee---cceEEEEEec
Confidence 47999999999999999999999999999999987 999999999999999999999988 7789999988
Q ss_pred cCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecC
Q 009354 170 DGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRG 249 (537)
Q Consensus 170 ~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g 249 (537)
+.+ .....+|+|+||.+.++.+||+..|++||.|.++.|++| |+||.|...++|..||+.|+|.++
T Consensus 72 ksK----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~--- 137 (346)
T KOG0109|consen 72 KSK----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEF--- 137 (346)
T ss_pred ccc----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhccccccc---
Confidence 776 335689999999999999999999999999999999874 999999999999999999999998
Q ss_pred CCceEEEEEccCCC
Q 009354 250 SDQPLVVRIADPKK 263 (537)
Q Consensus 250 ~g~~l~V~~a~~~~ 263 (537)
.|++++|..+..+-
T Consensus 138 ~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRL 151 (346)
T ss_pred ccceeeeeeecccc
Confidence 89999999998753
No 29
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3e-24 Score=200.19 Aligned_cols=175 Identities=33% Similarity=0.535 Sum_probs=161.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++||||-|.+.-+|||++++|..||.|.+|.+.+.. .|.+||+|||+|.+..+|..||..|+|...+.|....|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 356899999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred eeccCCCCCC----------------------------------------------------------------------
Q 009354 167 RFADGEREHP---------------------------------------------------------------------- 176 (537)
Q Consensus 167 ~~a~~~~~~~---------------------------------------------------------------------- 176 (537)
++++.++++.
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 9998775543
Q ss_pred --------------------------------------------------------------------------------
Q 009354 177 -------------------------------------------------------------------------------- 176 (537)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (537)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred --------------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEc
Q 009354 177 --------------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFS 229 (537)
Q Consensus 177 --------------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~ 229 (537)
....|+|||-.||.+..+.||...|-.||.|++.+++.| .++.+|+|+||.|.
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecC
Confidence 012799999999999999999999999999999999999 58899999999999
Q ss_pred CHHHHHHHHHHcCCceEecCCCceEEEEEccCCCCC
Q 009354 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265 (537)
Q Consensus 230 ~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~~~ 265 (537)
+..+|..||..|||..| +-++|+|.+.++|+.+
T Consensus 336 Np~SaQaAIqAMNGFQI---GMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 336 NPASAQAAIQAMNGFQI---GMKRLKVQLKRPKDAN 368 (371)
T ss_pred CchhHHHHHHHhcchhh---hhhhhhhhhcCccccC
Confidence 99999999999999988 8899999998887654
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=4.2e-24 Score=223.46 Aligned_cols=247 Identities=17% Similarity=0.235 Sum_probs=195.4
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCC----
Q 009354 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHP---- 78 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~---- 78 (537)
+||+-.+..+.+..+|..||.|.+|..++.+ .+..++|....+|.+|...|.+..+........|...
T Consensus 391 kNlpa~t~~~elt~~F~~fG~i~rvllp~~G--------~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~ 462 (725)
T KOG0110|consen 391 KNLPAGTLSEELTEAFLRFGEIGRVLLPPGG--------TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFT 462 (725)
T ss_pred ccCccccccHHHHHHhhcccccceeecCccc--------ceeeeeecCccchHHHHHHhchhhhccCccccccChhhhcc
Confidence 7899999999999999999999888776554 5577788888888888877777666444332222100
Q ss_pred -------------CC-----C------------CC------------CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCe
Q 009354 79 -------------AP-----D------------HI------------NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNV 116 (537)
Q Consensus 79 -------------~~-----~------------~~------------~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I 116 (537)
.. . .. ......++|||.||.++.+.++|..+|...|.|
T Consensus 463 ~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~V 542 (725)
T KOG0110|consen 463 EDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTV 542 (725)
T ss_pred CCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeE
Confidence 00 0 00 001112449999999999999999999999999
Q ss_pred EEEEeccCCCCC---CccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCC------C-CCCCCCCCcccc
Q 009354 117 IEVVLPKDKRTG---QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGER------E-HPVAPPDKLYVG 186 (537)
Q Consensus 117 ~~v~i~~d~~tg---~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~------~-~~~~~~~~l~V~ 186 (537)
++|.|...++.. .|.|||||+|.+.++|.+|++.|+|+.| .++.|.|.++..+. . .....++.|.|+
T Consensus 543 lS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---dGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVR 619 (725)
T KOG0110|consen 543 LSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---DGHKLELKISENKPASTVGKKKSKKKKGTKILVR 619 (725)
T ss_pred EEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---cCceEEEEeccCccccccccccccccccceeeee
Confidence 999887765321 2559999999999999999999999987 66777777776211 1 112236789999
Q ss_pred cCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCC
Q 009354 187 CLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 187 nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~ 263 (537)
|||+..+..+|+.+|..||.|..|+|.+. ..+..||||||+|-+..+|.+|++.|....+ -||.|.+.|++...
T Consensus 620 NipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHl---yGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 620 NIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHL---YGRRLVLEWAKSDN 694 (725)
T ss_pred ccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccce---echhhheehhccch
Confidence 99999999999999999999999999998 5667799999999999999999999998888 58999999998653
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.90 E-value=8.4e-24 Score=215.91 Aligned_cols=161 Identities=24% Similarity=0.346 Sum_probs=136.8
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~ 80 (537)
|+|++.+|++.|.++|+.||+| |+|+.|.... .++ .-.+|+|...++|++|++.|||..|.+..+++.|..+..
T Consensus 113 gnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg-~sr---GyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~ 188 (346)
T TIGR01659 113 NYLPQDMTDRELYALFRTIGPINTCRIMRDYKTG-YSF---GYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG 188 (346)
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-ccC---cEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc
Confidence 6899999999999999999999 5555554421 122 236789999999999999999999988888888765432
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCC
Q 009354 81 DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160 (537)
Q Consensus 81 ~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~ 160 (537)
.. ...++|||+|||.++|+++|+++|++||.|+.|+|++|+.+|++||||||+|.+.++|++||+.||+..+ .+.
T Consensus 189 ~~----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~-~g~ 263 (346)
T TIGR01659 189 ES----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP-EGG 263 (346)
T ss_pred cc----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc-CCC
Confidence 22 2457899999999999999999999999999999999999999999999999999999999999999865 445
Q ss_pred ceeEEEeeccCC
Q 009354 161 QASIKVRFADGE 172 (537)
Q Consensus 161 ~~~l~v~~a~~~ 172 (537)
.+.|+|.+++..
T Consensus 264 ~~~l~V~~a~~~ 275 (346)
T TIGR01659 264 SQPLTVRLAEEH 275 (346)
T ss_pred ceeEEEEECCcc
Confidence 689999998754
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=7.4e-24 Score=205.06 Aligned_cols=167 Identities=23% Similarity=0.397 Sum_probs=150.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009354 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
-|+||||.|.+++.|+.||..|..||+|++|.+.-|+.|+++||||||+|+-+|.|.-|++.|||..+ .+|.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml---GGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc---cCccccccC
Confidence 38999999999999999999999999999999999999999999999999999999999999999977 678999987
Q ss_pred ccCCCCCC---------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecC-CCcceEEEEEEcCHHHHHHHH
Q 009354 169 ADGEREHP---------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDEL-KQSRGCAFVQFSHREMALAAI 238 (537)
Q Consensus 169 a~~~~~~~---------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~-g~~~g~afV~F~~~~~A~~Ai 238 (537)
..+-.... ....++|||..+..+++++||+.+|+.||+|.+|.+-++.+ +..|||+||+|.+..+-..||
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 65432211 23578999999999999999999999999999999999965 568999999999999999999
Q ss_pred HHcCCceEecCCCceEEEEEccC
Q 009354 239 SGLNGTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 239 ~~l~g~~~~~g~g~~l~V~~a~~ 261 (537)
..||=..+ +|..|+|..+-.
T Consensus 270 asMNlFDL---GGQyLRVGk~vT 289 (544)
T KOG0124|consen 270 ASMNLFDL---GGQYLRVGKCVT 289 (544)
T ss_pred hhcchhhc---ccceEecccccC
Confidence 99998776 899999977654
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=7e-23 Score=191.76 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=136.4
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~ 80 (537)
|.|...|+.+.|.+.|.+||+| |+|+.|.+.. -+++| .++-|-..++|+.||..|||..|..+.+|-+|..+.+
T Consensus 68 gdls~eI~~e~lr~aF~pFGevS~akvirD~~T~-KsKGY---gFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 68 GDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTG-KSKGY---GFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred hhcchhcchHHHHHHhccccccccceEeecccCC-cccce---eEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 7889999999999999999999 9999998862 24444 3456667799999999999999999999999987766
Q ss_pred CCCC------------CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHH
Q 009354 81 DHIN------------DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148 (537)
Q Consensus 81 ~~~~------------~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 148 (537)
.... .....++||||||+.-++|++|++.|+.||.|.+|+|.+++ ||+||.|++.|+|.+||
T Consensus 144 ~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 144 SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAI 217 (321)
T ss_pred cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHH
Confidence 4432 23467999999999999999999999999999999999996 89999999999999999
Q ss_pred HHhcCceeecCCceeEEEeeccC
Q 009354 149 RALNGHYIFPGEQASIKVRFADG 171 (537)
Q Consensus 149 ~~l~g~~~~~g~~~~l~v~~a~~ 171 (537)
..+|++.| .+..+++.|.+.
T Consensus 218 v~mNntei---~G~~VkCsWGKe 237 (321)
T KOG0148|consen 218 VQMNNTEI---GGQLVRCSWGKE 237 (321)
T ss_pred HHhcCcee---CceEEEEecccc
Confidence 99999999 778999999754
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.88 E-value=1.5e-22 Score=206.78 Aligned_cols=239 Identities=21% Similarity=0.296 Sum_probs=180.2
Q ss_pred CCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCC-------
Q 009354 8 YITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHP------- 78 (537)
Q Consensus 8 ~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~------- 78 (537)
.++...|++.|+.+|.| ..++.|++. .+..+-.+++|...++--.|+ .|.|..+-+..+.+..+-.
T Consensus 190 r~~pRdL~efFs~~gkVrdVriI~Dr~s----~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~ 264 (549)
T KOG0147|consen 190 RNPPRDLEEFFSIVGKVRDVRIIGDRNS----RRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAAN 264 (549)
T ss_pred cCCchhHHHHHHhhcCcceeEeeccccc----hhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHh
Confidence 45778999999999999 555555553 333355788888666666666 7888888777666554322
Q ss_pred -CCCCC--CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCce
Q 009354 79 -APDHI--NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY 155 (537)
Q Consensus 79 -~~~~~--~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~ 155 (537)
.+... .-..+-++||||||.+++++++|+.+|+.||.|..|.+++|..||++||||||+|.+.++|++|++.|||..
T Consensus 265 ~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe 344 (549)
T KOG0147|consen 265 ASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE 344 (549)
T ss_pred ccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce
Confidence 11111 112334459999999999999999999999999999999999999999999999999999999999999965
Q ss_pred eecCCceeEEEeeccCCCCCC-----------------------------------------------------------
Q 009354 156 IFPGEQASIKVRFADGEREHP----------------------------------------------------------- 176 (537)
Q Consensus 156 ~~~g~~~~l~v~~a~~~~~~~----------------------------------------------------------- 176 (537)
| .++.|+|..-..+-...
T Consensus 345 l---AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~ 421 (549)
T KOG0147|consen 345 L---AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQF 421 (549)
T ss_pred e---cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhh
Confidence 5 56777776542110000
Q ss_pred -----------C-------CCCCCcccccCCcCCC----------HHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEE
Q 009354 177 -----------V-------APPDKLYVGCLSKQTS----------KKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQF 228 (537)
Q Consensus 177 -----------~-------~~~~~l~V~nl~~~~t----------e~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F 228 (537)
. .+..++.+.|+=+..+ .+||.+.+.+||+|..|.|.+. +-|+.||.|
T Consensus 422 ~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc 497 (549)
T KOG0147|consen 422 NGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRC 497 (549)
T ss_pred cCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEec
Confidence 0 1122344555533222 2788899999999999998875 559999999
Q ss_pred cCHHHHHHHHHHcCCceEecCCCceEEEEEccC
Q 009354 229 SHREMALAAISGLNGTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 229 ~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~ 261 (537)
.+.+.|..|+.+|||.+| .|+.|.+.|-..
T Consensus 498 ~s~~~A~~a~~alhgrWF---~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 498 PSAEAAGTAVKALHGRWF---AGRMITAKYLPL 527 (549)
T ss_pred CcHHHHHHHHHHHhhhhh---ccceeEEEEeeh
Confidence 999999999999999998 899999998754
No 35
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1e-21 Score=190.33 Aligned_cols=247 Identities=19% Similarity=0.280 Sum_probs=188.7
Q ss_pred CCCCCCCCCccccccCCCCCCc----cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY----CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHP 78 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i----~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~ 78 (537)
|.+.=.+.++.+...|..||.| .+|.....+|. +-.+++|+..|.|..|.+.|||..+.++.+|+++...
T Consensus 119 GSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHK------gFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 119 GSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHK------GFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred eeeEEEechHHHHhhccCCCCcceeeccccccccccc------ceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 3444457889999999999999 34433333221 4467899999999999999999999999888886433
Q ss_pred CCCC-------CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHh
Q 009354 79 APDH-------INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151 (537)
Q Consensus 79 ~~~~-------~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 151 (537)
-+.. .++.+...+|||..+.++.+|+||+.+|+.||+|+.|.+.+++..+.+||||||+|.+..+-..||..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 2211 134566799999999999999999999999999999999999988899999999999999999999988
Q ss_pred cCceeecCCceeEEEeeccCCCCCC-------------------------------------------------------
Q 009354 152 NGHYIFPGEQASIKVRFADGEREHP------------------------------------------------------- 176 (537)
Q Consensus 152 ~g~~~~~g~~~~l~v~~a~~~~~~~------------------------------------------------------- 176 (537)
|-..+ .+..|+|..+-......
T Consensus 273 NlFDL---GGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~ 349 (544)
T KOG0124|consen 273 NLFDL---GGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPL 349 (544)
T ss_pred chhhc---ccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCC
Confidence 85444 45666665542110000
Q ss_pred --------------------------------------------------------------------------------
Q 009354 177 -------------------------------------------------------------------------------- 176 (537)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (537)
T Consensus 350 ~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G 429 (544)
T KOG0124|consen 350 GTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISG 429 (544)
T ss_pred CCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccC
Confidence
Q ss_pred -------------CCCCCCcccccCC--cCC---CHHHHHHHHcCCCCeeEEEEEeecCCCc-----ceEEEEEEcCHHH
Q 009354 177 -------------VAPPDKLYVGCLS--KQT---SKKEIEEVFSPYGHIEDIFIVRDELKQS-----RGCAFVQFSHREM 233 (537)
Q Consensus 177 -------------~~~~~~l~V~nl~--~~~---te~~L~~~F~~~G~I~~v~i~~d~~g~~-----~g~afV~F~~~~~ 233 (537)
...++.|.++|+- .++ -+.+|.+.|++||.|.+|.|.....+.. ---.||+|....+
T Consensus 430 ~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e 509 (544)
T KOG0124|consen 430 SSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASE 509 (544)
T ss_pred ccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhH
Confidence 0114556777764 334 3578999999999999999988743332 1236999999999
Q ss_pred HHHHHHHcCCceEecCCCceEEEEEccC
Q 009354 234 ALAAISGLNGTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 234 A~~Ai~~l~g~~~~~g~g~~l~V~~a~~ 261 (537)
+.+|++.|+|++| +||++..+..+.
T Consensus 510 ~~rak~ALdGRfF---gGr~VvAE~YDQ 534 (544)
T KOG0124|consen 510 THRAKQALDGRFF---GGRKVVAEVYDQ 534 (544)
T ss_pred HHHHHHhhcccee---cCceeehhhhhh
Confidence 9999999999998 889888766553
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.86 E-value=4e-21 Score=190.58 Aligned_cols=171 Identities=24% Similarity=0.422 Sum_probs=144.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++||||+|++++++|.|++.|..||+|.+|.+++|+.++++|||+||+|.+.+.+.++|..-..+ +++ +.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~--~dg--r~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHK--LDG--RSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccc--cCC--ccccce
Confidence 5689999999999999999999999999999999999999999999999999999999998544332 334 555555
Q ss_pred eccCCCCCCC----CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcC
Q 009354 168 FADGEREHPV----APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLN 242 (537)
Q Consensus 168 ~a~~~~~~~~----~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~ 242 (537)
.+..+..... ....+|||++|+.+++++++++.|.+||.|..+.++.| .+.+.+||+||.|.+.+++++++. ..
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~ 159 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QK 159 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cc
Confidence 5544433322 23568999999999999999999999999999999999 678899999999999999998875 34
Q ss_pred CceEecCCCceEEEEEccCCCCCC
Q 009354 243 GTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 243 g~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
-..+ +++.+.|..|.++....
T Consensus 160 f~~~---~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 160 FHDF---NGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eeee---cCceeeEeeccchhhcc
Confidence 4444 78999999999886544
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=8.3e-21 Score=194.11 Aligned_cols=171 Identities=24% Similarity=0.459 Sum_probs=152.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....+++|+--|...++..+|.++|+.+|.|..|+|+.|+.+++++|.|||+|.+.+++-.|| .|.|..+ .+.+|
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl---lg~pv 250 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL---LGVPV 250 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc---cCcee
Confidence 3445799999999999999999999999999999999999999999999999999999999999 9999987 56788
Q ss_pred EEeeccCCCCCC------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCH
Q 009354 165 KVRFADGEREHP------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHR 231 (537)
Q Consensus 165 ~v~~a~~~~~~~------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~ 231 (537)
.|.....++.+. ..+..+||||||..++++++|+.+|+.||.|+.|.+.+| .+|.++||+||+|.+.
T Consensus 251 ~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 251 IVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred EecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 887766544332 123344999999999999999999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 232 EMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 232 ~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
++|.+|++.|||..+ .|+.|+|.....+
T Consensus 331 ~~ar~a~e~lngfel---AGr~ikV~~v~~r 358 (549)
T KOG0147|consen 331 EDARKALEQLNGFEL---AGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHHhcccee---cCceEEEEEeeee
Confidence 999999999999776 8999999887654
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.80 E-value=1.4e-20 Score=167.11 Aligned_cols=165 Identities=17% Similarity=0.267 Sum_probs=140.7
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~~ 82 (537)
|||++.+|+..||++|-+.|.+..+...+.+.. ....+-.+++|.+.|+|+.|++.||...|.++.++++... ..
T Consensus 15 gnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~--~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas---~~ 89 (203)
T KOG0131|consen 15 GNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT--QKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS---AH 89 (203)
T ss_pred ecCCHHHHHHHHHHHHHhcCceeeeecchhhhc--ccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc---cc
Confidence 899999999999999999999988887777642 2222345789999999999999999999988888887643 33
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009354 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEV-VLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 83 ~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
.+....+.+||||||.++++|..|.++|+.||.|... +|++|..||.++|||||.|.+.+.+.+|++.|||..+ .+
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l---~n 166 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL---CN 166 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh---cC
Confidence 3444556899999999999999999999999987653 8999999999999999999999999999999999988 78
Q ss_pred eeEEEeeccCCCCC
Q 009354 162 ASIKVRFADGEREH 175 (537)
Q Consensus 162 ~~l~v~~a~~~~~~ 175 (537)
+++.|.++..+..+
T Consensus 167 r~itv~ya~k~~~k 180 (203)
T KOG0131|consen 167 RPITVSYAFKKDTK 180 (203)
T ss_pred CceEEEEEEecCCC
Confidence 89999998765443
No 39
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=7.6e-18 Score=149.64 Aligned_cols=161 Identities=20% Similarity=0.321 Sum_probs=134.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||||||.++-|.+|.++|-+||.|.+|.|...+ ..-+||||+|++..+|+.||..-+|..+ .+..|+|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdy---dg~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDY---DGCRLRV 77 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhccccccc---CcceEEE
Confidence 456899999999999999999999999999999886543 2347999999999999999998899877 6789999
Q ss_pred eeccCCCCCC------------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcce
Q 009354 167 RFADGEREHP------------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRG 222 (537)
Q Consensus 167 ~~a~~~~~~~------------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g 222 (537)
.++..-+... .....++.|.+||.+.++.||+++..+-|.|....+.+| |
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g 151 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G 151 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c
Confidence 9987543211 123467999999999999999999999999999999986 5
Q ss_pred EEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEcc
Q 009354 223 CAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260 (537)
Q Consensus 223 ~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~ 260 (537)
++.|+|...|+.+-|+..|+...+.. .|....+....
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~s-eGe~~yirv~~ 188 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFRS-EGETAYIRVRG 188 (241)
T ss_pred ceeeeeeehhhHHHHHHhhccccccC-cCcEeeEEecc
Confidence 89999999999999999999877633 45555554433
No 40
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=146.29 Aligned_cols=160 Identities=21% Similarity=0.311 Sum_probs=128.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEecc-CCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPK-DKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
....-|||||.+||.++.-.+|+.+|+.|-..+.+.|.. ++.....+-+|||.|.+..+|.+|++.|||..+.......
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 344569999999999999999999999985556555543 3323345689999999999999999999999998777788
Q ss_pred EEEeeccCCCCCC-------------------------------------------------------------------
Q 009354 164 IKVRFADGEREHP------------------------------------------------------------------- 176 (537)
Q Consensus 164 l~v~~a~~~~~~~------------------------------------------------------------------- 176 (537)
|++.+++.+.++.
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 8888876432211
Q ss_pred -----------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHH
Q 009354 177 -----------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAIS 239 (537)
Q Consensus 177 -----------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~ 239 (537)
...+.+|||.||..+++|++|+.+|+.|.....++|... ..-.+||++|++.+.|..|+.
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---GGMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---CCcceEeecHHHHHHHHHHHH
Confidence 011568999999999999999999999988777666542 134689999999999999999
Q ss_pred HcCCceEe
Q 009354 240 GLNGTFTM 247 (537)
Q Consensus 240 ~l~g~~~~ 247 (537)
.|.|..+.
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99998873
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=4.6e-17 Score=146.11 Aligned_cols=84 Identities=24% Similarity=0.449 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
..+++|||+|||++++|++|+++|++||.|.+|+|+.|+.++++||||||+|.+.++|++||+.|++..| .++.|+|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i---~Gr~l~V 108 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL---NGRHIRV 108 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence 3468999999999999999999999999999999999999999999999999999999999999999987 6789999
Q ss_pred eeccCCC
Q 009354 167 RFADGER 173 (537)
Q Consensus 167 ~~a~~~~ 173 (537)
.++..+.
T Consensus 109 ~~a~~~~ 115 (144)
T PLN03134 109 NPANDRP 115 (144)
T ss_pred EeCCcCC
Confidence 9987543
No 42
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=2.2e-16 Score=146.04 Aligned_cols=162 Identities=21% Similarity=0.435 Sum_probs=137.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHH----HhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009354 87 GIPAKLYVAPVPRTATEEDIRP----LFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~----~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
.+..||||.||...+..++|++ +|+.||.|++|...+ +.+.||-|||.|.+.+.|-.|++.|+|..++ ++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFy---gK 80 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFY---GK 80 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCccc---Cc
Confidence 3455999999999999999988 999999999988765 6789999999999999999999999998773 46
Q ss_pred eEEEeeccCCCCCC------------------------------------------------CCCCCCcccccCCcCCCH
Q 009354 163 SIKVRFADGEREHP------------------------------------------------VAPPDKLYVGCLSKQTSK 194 (537)
Q Consensus 163 ~l~v~~a~~~~~~~------------------------------------------------~~~~~~l~V~nl~~~~te 194 (537)
.+++.+|..+.... ..+...||+.|||.+++.
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~ 160 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES 160 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH
Confidence 77777775431100 123456899999999999
Q ss_pred HHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEcc
Q 009354 195 KEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260 (537)
Q Consensus 195 ~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~ 260 (537)
+.|..+|..|.....|+++.. .++.|||+|.+...|..|...+.|..+- +...+.|.+++
T Consensus 161 e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it--~~~~m~i~~a~ 220 (221)
T KOG4206|consen 161 EMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKIT--KKNTMQITFAK 220 (221)
T ss_pred HHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceec--cCceEEecccC
Confidence 999999999999999999885 5789999999999999999999998874 46788888775
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=7.2e-16 Score=138.36 Aligned_cols=84 Identities=30% Similarity=0.474 Sum_probs=78.0
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
...++|||+||+.++++++|+++|++||.|++|.|+.| .+++++|||||+|.+.++|++|++.||+..+ +|+.|+|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i---~Gr~l~V 108 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL---NGRHIRV 108 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence 34678999999999999999999999999999999998 5889999999999999999999999999998 8999999
Q ss_pred EEccCCCC
Q 009354 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.++..+..
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99986543
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.66 E-value=5.4e-17 Score=153.90 Aligned_cols=142 Identities=23% Similarity=0.316 Sum_probs=123.4
Q ss_pred CCCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCC
Q 009354 2 EGHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPA 79 (537)
Q Consensus 2 ~~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~ 79 (537)
-|||++..++..|..+|.+||++ |-|+. + | .+||.+....|+.||..|+|..|.+..++++.+...
T Consensus 7 IGNLp~~~~~~elr~lFe~ygkVlECDIvK--N-------Y---gFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 7 IGNLPREATEQELRSLFEQYGKVLECDIVK--N-------Y---GFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred ccCCCcccchHHHHHHHHhhCceEeeeeec--c-------c---ceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 48999999999999999999999 66632 2 2 357888889999999999999998888887764333
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecC
Q 009354 80 PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG 159 (537)
Q Consensus 80 ~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g 159 (537)
++.+.+|+||||.+.++..+|+..|++||.|.+|+|++| |+||+|.-.++|..||+.|++.++
T Consensus 75 ------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~--- 137 (346)
T KOG0109|consen 75 ------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF--- 137 (346)
T ss_pred ------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc---
Confidence 456789999999999999999999999999999999987 999999999999999999999988
Q ss_pred CceeEEEeeccCC
Q 009354 160 EQASIKVRFADGE 172 (537)
Q Consensus 160 ~~~~l~v~~a~~~ 172 (537)
.+++++|..+..+
T Consensus 138 ~gk~m~vq~stsr 150 (346)
T KOG0109|consen 138 QGKRMHVQLSTSR 150 (346)
T ss_pred ccceeeeeeeccc
Confidence 6678888877654
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=2.3e-15 Score=148.76 Aligned_cols=234 Identities=17% Similarity=0.200 Sum_probs=177.0
Q ss_pred CCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcc-----------------
Q 009354 9 ITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGR----------------- 71 (537)
Q Consensus 9 it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~----------------- 71 (537)
+|=+=|...|+.||.+.||++=... .+-..-+.|...+.|..|...|+|+.|.+.-.
T Consensus 162 VslDVLHqvFS~fG~VlKIiTF~Kn------n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKyn 235 (492)
T KOG1190|consen 162 VSLDVLHQVFSKFGFVLKIITFTKN------NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYN 235 (492)
T ss_pred eEHHHHHHHHhhcceeEEEEEEecc------cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeecc
Confidence 4556678899999999998865442 22345679999999999999999988875311
Q ss_pred ---cccCCCC---CC--------------------------------------CCCCCCCCCCEEEEcCCC-CCCCHHHH
Q 009354 72 ---KRGFNHP---AP--------------------------------------DHINDSGIPAKLYVAPVP-RTATEEDI 106 (537)
Q Consensus 72 ---~~~~~~~---~~--------------------------------------~~~~~~~~~~~LfVgnLp-~~~te~~L 106 (537)
.|.+.++ .. ...........|.|.||- ..+|.+-|
T Consensus 236 ndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~L 315 (492)
T KOG1190|consen 236 NDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVL 315 (492)
T ss_pred ccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHH
Confidence 1111111 00 000000114788999997 66899999
Q ss_pred HHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCC----------
Q 009354 107 RPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP---------- 176 (537)
Q Consensus 107 ~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~---------- 176 (537)
+.+|..||+|.+|+|++++. --|.|+|.+...|.-|++.|+|..+ -++.|+|.+++...-..
T Consensus 316 ftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l---~gk~lrvt~SKH~~vqlp~egq~d~gl 387 (492)
T KOG1190|consen 316 FTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKL---YGKKLRVTLSKHTNVQLPREGQEDQGL 387 (492)
T ss_pred HHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhccee---cCceEEEeeccCccccCCCCCCccccc
Confidence 99999999999999998863 3799999999999999999999998 45789999886431000
Q ss_pred -----------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHH
Q 009354 177 -----------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREM 233 (537)
Q Consensus 177 -----------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~ 233 (537)
..++.+|++.|+|.+++|++|++.|..-|...+...+. ++.+.++++.+.+.|+
T Consensus 388 T~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~kmal~q~~svee 464 (492)
T KOG1190|consen 388 TKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRKMALPQLESVEE 464 (492)
T ss_pred cccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcceeecccCChhH
Confidence 23456889999999999999999999887765543333 2367799999999999
Q ss_pred HHHHHHHcCCceEecCCCceEEEEEccC
Q 009354 234 ALAAISGLNGTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 234 A~~Ai~~l~g~~~~~g~g~~l~V~~a~~ 261 (537)
|..|+-.+++..+ |.+..|+|+|++.
T Consensus 465 A~~ali~~hnh~l--gen~hlRvSFSks 490 (492)
T KOG1190|consen 465 AIQALIDLHNHYL--GENHHLRVSFSKS 490 (492)
T ss_pred hhhhccccccccC--CCCceEEEEeecc
Confidence 9999999999876 3567999999875
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=2e-15 Score=149.12 Aligned_cols=239 Identities=16% Similarity=0.249 Sum_probs=171.8
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccc-------cccCCcccCCC------
Q 009354 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPT-------DFFNGQPMPFI------ 69 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~-------~~lng~~l~~~------ 69 (537)
++|++.+|+..++.++..||.|.++...+.+ ...++++...+.|-.-+ -.|.|.++...
T Consensus 34 Rnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk--------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~ 105 (492)
T KOG1190|consen 34 RNLPWEVTEEELISLGLPFGKVTNLLMLKGK--------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSE 105 (492)
T ss_pred ccCCccccHHHHHHhcccccceeeeeeeccc--------hhhhhhhcchhhhhheeecccccCccccCcceeehhhhHHH
Confidence 6899999999999999999999877776654 24455555555554300 01112111100
Q ss_pred -----------ccc--ccCC------CC--C-CC---CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccC
Q 009354 70 -----------GRK--RGFN------HP--A-PD---HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKD 124 (537)
Q Consensus 70 -----------~~~--~~~~------~~--~-~~---~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d 124 (537)
+.. ..++ .+ . .. .......--+++|+|+-+-++-|-|..+|++||.|.+|.-...
T Consensus 106 lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K 185 (492)
T KOG1190|consen 106 LKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK 185 (492)
T ss_pred HhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec
Confidence 000 0000 00 0 00 0111123357889999999999999999999999988754332
Q ss_pred CCCCCccce-EEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCC---------CCCC------------------
Q 009354 125 KRTGQQQGY-CFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGE---------REHP------------------ 176 (537)
Q Consensus 125 ~~tg~~kG~-aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~---------~~~~------------------ 176 (537)
+.|| |.|+|.+.+.|..|...|+|..|..| .+.|++.+++.- +.|.
T Consensus 186 -----nn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~ 259 (492)
T KOG1190|consen 186 -----NNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQL 259 (492)
T ss_pred -----ccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeeccccccccccCCCCCCCccccccchh
Confidence 2356 89999999999999999999999876 688888887421 1110
Q ss_pred --------------------------------CCC--CCCcccccCCc-CCCHHHHHHHHcCCCCeeEEEEEeecCCCcc
Q 009354 177 --------------------------------VAP--PDKLYVGCLSK-QTSKKEIEEVFSPYGHIEDIFIVRDELKQSR 221 (537)
Q Consensus 177 --------------------------------~~~--~~~l~V~nl~~-~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~ 221 (537)
... .+.|.|.||.. .+|.+.|+.+|+-||.|.+|+|+.+ .+
T Consensus 260 ~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n----kk 335 (492)
T KOG1190|consen 260 MAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN----KK 335 (492)
T ss_pred hhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec----CC
Confidence 001 35677888875 5899999999999999999999986 44
Q ss_pred eEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 222 GCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 222 g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
.-|+|.|.|...|.-|++.|+|..+ .|++|+|.+++-.
T Consensus 336 d~ALIQmsd~~qAqLA~~hL~g~~l---~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 336 DNALIQMSDGQQAQLAMEHLEGHKL---YGKKLRVTLSKHT 373 (492)
T ss_pred cceeeeecchhHHHHHHHHhhccee---cCceEEEeeccCc
Confidence 6899999999999999999999998 6899999998753
No 47
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.64 E-value=4.4e-15 Score=147.59 Aligned_cols=166 Identities=23% Similarity=0.342 Sum_probs=141.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 89 PAKLYVAPVPRTATEEDIRPLFE-EHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
.|.+||.|||+++...+|+++|. +.|+|+.|.|..|. +|++||+|.|+|+++|.+++|++.||...+ .+|+|.|+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~---~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEV---NGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccc---cCceEEEe
Confidence 46799999999999999999998 57999999999996 899999999999999999999999998877 67777776
Q ss_pred eccCCCC-----------------------------------------------CC------------------------
Q 009354 168 FADGERE-----------------------------------------------HP------------------------ 176 (537)
Q Consensus 168 ~a~~~~~-----------------------------------------------~~------------------------ 176 (537)
-...... +.
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 5432100 00
Q ss_pred ------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCc
Q 009354 177 ------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGT 244 (537)
Q Consensus 177 ------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 244 (537)
.+...++||.||.+.+..+.|++.|.--|.|..|.+-.|+.|.++||+.++|.+.-+|..||..+++.
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 01246789999999999999999999999999999999988999999999999999999999999975
Q ss_pred eEecCCCceEEEEEccC
Q 009354 245 FTMRGSDQPLVVRIADP 261 (537)
Q Consensus 245 ~~~~g~g~~l~V~~a~~ 261 (537)
-+ .+++..+....-
T Consensus 280 g~---~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 280 GL---FDRRMTVRLDRI 293 (608)
T ss_pred CC---ccccceeecccc
Confidence 54 467777777543
No 48
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.64 E-value=3.4e-15 Score=151.39 Aligned_cols=162 Identities=23% Similarity=0.324 Sum_probs=128.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
....-|-+++|||++|++||.++|+.++ |.++.+.++ +|+..|-|||+|.+.+++++|+ +.+...+ ..+-|.|
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~m---g~RYIEV 80 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESM---GHRYIEV 80 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHh---CCceEEE
Confidence 3456788999999999999999999997 888666664 8999999999999999999999 5555555 5677888
Q ss_pred eeccCCCCCC---------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeE-EEEEeecCCCcceEEEEEEcCHHHHHH
Q 009354 167 RFADGEREHP---------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED-IFIVRDELKQSRGCAFVQFSHREMALA 236 (537)
Q Consensus 167 ~~a~~~~~~~---------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~-v~i~~d~~g~~~g~afV~F~~~~~A~~ 236 (537)
..+....... ......|-+++||+.|+++||.+||+-.--|.. |.+..+..++..|-|||.|++.+.|++
T Consensus 81 f~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred EccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 7775432211 124567889999999999999999998755444 556667888899999999999999999
Q ss_pred HHHHcCCceEecCCCceEEEEEc
Q 009354 237 AISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 237 Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
|+......+ +.|.|.|-.+
T Consensus 161 Al~rhre~i----GhRYIEvF~S 179 (510)
T KOG4211|consen 161 ALGRHRENI----GHRYIEVFRS 179 (510)
T ss_pred HHHHHHHhh----ccceEEeehh
Confidence 997544432 5677777654
No 49
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.64 E-value=8.6e-15 Score=143.06 Aligned_cols=238 Identities=18% Similarity=0.217 Sum_probs=182.5
Q ss_pred CCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCccc--ccCCCCCC-
Q 009354 4 HVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRK--RGFNHPAP- 80 (537)
Q Consensus 4 ~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~--~~~~~~~~- 80 (537)
+|=+.+++.+|-+..+.||.||.|....++ ...-++|+..+.|+.++.......+...+.. ++++.+.-
T Consensus 38 ~l~~~v~eadl~eal~~fG~i~yvt~~P~~--------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i 109 (494)
T KOG1456|consen 38 GLHQGVVEADLVEALSNFGPIAYVTCMPHK--------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCI 109 (494)
T ss_pred ccccccchhHHHHHHhcCCceEEEEecccc--------ceeeeeeccccchhhheehhccCcccccCchhhcccchhhhh
Confidence 355677899999999999999999988886 5677899999999988876555554444333 23321110
Q ss_pred --CCCCCCCCCCEEEEcCC--CCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009354 81 --DHINDSGIPAKLYVAPV--PRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 81 --~~~~~~~~~~~LfVgnL--p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
...+...+...|.+.=| =+.+|-+-|+.++...|.|.+|.|++. +|. -|.|+|++.+.|++|.+.|||..|
T Consensus 110 ~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 110 ERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred ccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccc
Confidence 01122334445554444 378999999999999999999998876 443 699999999999999999999999
Q ss_pred ecCCceeEEEeeccCCCCCC------------------------------------------------------------
Q 009354 157 FPGEQASIKVRFADGEREHP------------------------------------------------------------ 176 (537)
Q Consensus 157 ~~g~~~~l~v~~a~~~~~~~------------------------------------------------------------ 176 (537)
+.| .+.|+|.+++..+...
T Consensus 185 YsG-CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~ 263 (494)
T KOG1456|consen 185 YSG-CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHP 263 (494)
T ss_pred ccc-ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCC
Confidence 887 5899999997542211
Q ss_pred --------------------CCCCCCcccccCCcC-CCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHH
Q 009354 177 --------------------VAPPDKLYVGCLSKQ-TSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMAL 235 (537)
Q Consensus 177 --------------------~~~~~~l~V~nl~~~-~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~ 235 (537)
....+.+.|-+|... ++-+.|+++|..||.|++|++++. ..|-|.|++.|..+.+
T Consensus 264 ~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT----k~gtamVemgd~~ave 339 (494)
T KOG1456|consen 264 PPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT----KPGTAMVEMGDAYAVE 339 (494)
T ss_pred CCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec----ccceeEEEcCcHHHHH
Confidence 012456677777764 677899999999999999999997 4578999999999999
Q ss_pred HHHHHcCCceEecCCCceEEEEEccCC
Q 009354 236 AAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 236 ~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
+|+..||+..+ -|.+|.|.+++..
T Consensus 340 r~v~hLnn~~l---fG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 340 RAVTHLNNIPL---FGGKLNVCVSKQN 363 (494)
T ss_pred HHHHHhccCcc---ccceEEEeecccc
Confidence 99999999987 3789999988754
No 50
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=1.5e-14 Score=143.18 Aligned_cols=148 Identities=32% Similarity=0.497 Sum_probs=117.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009354 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
.++|||+|||.++++++|+++|..||.|..|.+..|+.+|+++|||||+|.+.++|..|++.++|..+ .++.|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~---~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL---EGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE---CCceeEeec
Confidence 59999999999999999999999999999999999988999999999999999999999999999988 678888888
Q ss_pred cc----CCCCCC------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCC-CcceEEE
Q 009354 169 AD----GEREHP------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK-QSRGCAF 225 (537)
Q Consensus 169 a~----~~~~~~------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g-~~~g~af 225 (537)
.. ...... ......+++++++..++..++...|..+|.+..+.+.....+ ....+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 192 AQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred cccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 53 221111 123567899999999999999999999999977766655322 2333444
Q ss_pred EEEcCHHHHHHHHH
Q 009354 226 VQFSHREMALAAIS 239 (537)
Q Consensus 226 V~F~~~~~A~~Ai~ 239 (537)
+.+.....+..+..
T Consensus 272 ~~~~~~~~~~~~~~ 285 (306)
T COG0724 272 VGNEASKDALESNS 285 (306)
T ss_pred cchhHHHhhhhhhc
Confidence 44444444444443
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=5.3e-15 Score=115.59 Aligned_cols=70 Identities=34% Similarity=0.682 Sum_probs=65.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 92 LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
|||+|||.++++++|+++|+.||.|..++++.+ .+++.+|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~---~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI---NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE---CccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999887 566664
No 52
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.9e-15 Score=141.30 Aligned_cols=149 Identities=27% Similarity=0.455 Sum_probs=125.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
.++|||+||+.+.+.+|.++|..||.|.+|.+.. ||+||+|.+..+|+.|+..|+++.|.. ..+.|.++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~---e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCG---ERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecc---eeeeeecc
Confidence 4699999999999999999999999999987654 599999999999999999999998732 33788888
Q ss_pred cCCCC------------------CCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCH
Q 009354 170 DGERE------------------HPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHR 231 (537)
Q Consensus 170 ~~~~~------------------~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~ 231 (537)
..... ......+.|+|.++.-.+++.+|.+.|+.+|.+....+ .++++||+|+..
T Consensus 71 r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 71 RGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQ 143 (216)
T ss_pred cccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhh
Confidence 74200 01234578899999999999999999999999854444 357999999999
Q ss_pred HHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 232 EMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 232 ~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
++|.+|++.|++..+ .++.|.+...
T Consensus 144 ~da~ra~~~l~~~~~---~~~~l~~~~~ 168 (216)
T KOG0106|consen 144 EDAKRALEKLDGKKL---NGRRISVEKN 168 (216)
T ss_pred hhhhhcchhccchhh---cCceeeeccc
Confidence 999999999999998 7899999443
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4.9e-15 Score=137.73 Aligned_cols=83 Identities=29% Similarity=0.494 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
.+.++|-|.||+.+++|++|++||.+||.|.+|.|.+|+.||.+||||||.|.++++|.+||+.|||.-+ ....|+|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---d~LILrv 263 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---DNLILRV 263 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---ceEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999999877 6789999
Q ss_pred eeccCC
Q 009354 167 RFADGE 172 (537)
Q Consensus 167 ~~a~~~ 172 (537)
.|++++
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 998764
No 54
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.58 E-value=5.6e-14 Score=136.65 Aligned_cols=166 Identities=18% Similarity=0.322 Sum_probs=136.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeec
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVI--------EVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP 158 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~ 158 (537)
..+..|||.|||.++|.+++.++|++||-|. .|+|.++. .|..||-|.+.|-..++++-|+..|++..|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~-- 208 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL-- 208 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc--
Confidence 3457799999999999999999999999774 48888886 699999999999999999999999999988
Q ss_pred CCceeEEEeeccCCCC------------------------------------CCCCCCCCcccccCCc----CCC-----
Q 009354 159 GEQASIKVRFADGERE------------------------------------HPVAPPDKLYVGCLSK----QTS----- 193 (537)
Q Consensus 159 g~~~~l~v~~a~~~~~------------------------------------~~~~~~~~l~V~nl~~----~~t----- 193 (537)
+++.|+|..|+-... .+....++|.|+|+=. ..+
T Consensus 209 -rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 209 -RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred -cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 678999998852100 0012346677777632 222
Q ss_pred --HHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 194 --KKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 194 --e~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
.++|++-+.+||.|.+|.|.-. .+.|.+-|.|.+.++|..||+.|+|+++ +||.|..+....+
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~f---dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWF---DGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeee---cceEEEEEEeCCc
Confidence 4677888999999999998853 3678999999999999999999999999 8999998876543
No 55
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1.7e-14 Score=151.99 Aligned_cols=163 Identities=26% Similarity=0.363 Sum_probs=133.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...+.++|+|||..+..++|.++|..||+|..|.+... |. -++|+|.+..+|.+|++.|..+.+ ...++.+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~---k~~plyl 453 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRF---KSAPLYL 453 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhh---ccCcccc
Confidence 34578999999999999999999999999999855422 21 499999999999999999998876 4455555
Q ss_pred eeccCCCCC-----------------------C-------------------------CCCCCCcccccCCcCCCHHHHH
Q 009354 167 RFADGEREH-----------------------P-------------------------VAPPDKLYVGCLSKQTSKKEIE 198 (537)
Q Consensus 167 ~~a~~~~~~-----------------------~-------------------------~~~~~~l~V~nl~~~~te~~L~ 198 (537)
.|+....-. . ....++|||.||+++++.++|.
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~ 533 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLE 533 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHH
Confidence 554321000 0 0013349999999999999999
Q ss_pred HHHcCCCCeeEEEEEeecCCC----cceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccC
Q 009354 199 EVFSPYGHIEDIFIVRDELKQ----SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 199 ~~F~~~G~I~~v~i~~d~~g~----~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~ 261 (537)
.+|..+|.|..+.|.+..++. +.|||||+|.+.++|.+|++.|+|..+ +|+.|.|.++..
T Consensus 534 ~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---dGH~l~lk~S~~ 597 (725)
T KOG0110|consen 534 DLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---DGHKLELKISEN 597 (725)
T ss_pred HHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---cCceEEEEeccC
Confidence 999999999999998875443 449999999999999999999999998 999999999983
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=5.1e-15 Score=137.24 Aligned_cols=82 Identities=30% Similarity=0.480 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
+....+||||+|+|++.+|+|+++|++||+|++..|+.|+.||++||||||+|+|.++|++|++.-| .+++|+...++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Ccccccccccc
Confidence 3446899999999999999999999999999999999999999999999999999999999996554 45666544444
Q ss_pred Eeec
Q 009354 166 VRFA 169 (537)
Q Consensus 166 v~~a 169 (537)
+...
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 4443
No 57
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.57 E-value=8.5e-15 Score=145.63 Aligned_cols=196 Identities=18% Similarity=0.214 Sum_probs=134.1
Q ss_pred CCCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccc----cccCCcccCCCcccccC
Q 009354 2 EGHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPT----DFFNGQPMPFIGRKRGF 75 (537)
Q Consensus 2 ~~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~----~~lng~~l~~~~~~~~~ 75 (537)
.|.|.+..|++.|.++|++||+| |+++.|+.. ..+.++ .++.|..++.-..++ +.+.|+.|... +..
T Consensus 11 iGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t-~rsrgF---gfv~f~~~~~v~~vl~~~~h~~dgr~ve~k---~av 83 (311)
T KOG4205|consen 11 IGGLSWETTEESLREYFSQFGEVTDCVVMRDPST-GRSRGF---GFVTFATPEGVDAVLNARTHKLDGRSVEPK---RAV 83 (311)
T ss_pred ecCcCccccHHHHHHHhcccCceeeEEEeccCCC-CCcccc---cceecCCCcchheeecccccccCCccccce---ecc
Confidence 58999999999999999999999 888888775 112222 234444333333222 34555555322 111
Q ss_pred CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCce
Q 009354 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY 155 (537)
Q Consensus 76 ~~~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~ 155 (537)
++-............++|||+||.++++++|+++|++||.|..+.++.|..+.++|||+||.|.+++++++++ ...-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceee
Confidence 1111111112224679999999999999999999999999999999999999999999999999999999998 444455
Q ss_pred eecCCceeEEEeeccCCCCCCCCCC---CCcccccCCcCCCHHHHHHHHcCCCCee
Q 009354 156 IFPGEQASIKVRFADGEREHPVAPP---DKLYVGCLSKQTSKKEIEEVFSPYGHIE 208 (537)
Q Consensus 156 ~~~g~~~~l~v~~a~~~~~~~~~~~---~~l~V~nl~~~~te~~L~~~F~~~G~I~ 208 (537)
| .++.+.|..|..+........ ...+..++....+.-.|..+|.-|+.+.
T Consensus 163 ~---~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 163 F---NGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred e---cCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccc
Confidence 5 567788888876655443222 2222334555555556677777776654
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.4e-14 Score=121.55 Aligned_cols=82 Identities=23% Similarity=0.497 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
...+++||||||+..++||.|.++|+++|+|..|.+-.|+.+....|||||+|.+.++|+.|++.++|..+ ..++|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL---ddr~ir 109 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL---DDRPIR 109 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc---ccccee
Confidence 35679999999999999999999999999999999999999999999999999999999999999999988 678899
Q ss_pred Eeecc
Q 009354 166 VRFAD 170 (537)
Q Consensus 166 v~~a~ 170 (537)
+.|.-
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 88864
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=9.7e-14 Score=108.81 Aligned_cols=70 Identities=39% Similarity=0.693 Sum_probs=62.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 92 LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
|||+|||+++++++|+++|+.||.|..+++.+++. |.++|+|||+|.+.++|.+|++.++|..+ +++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~---~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEI---DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEE---CCEEcC
Confidence 79999999999999999999999999999999986 99999999999999999999998888877 566653
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=1.8e-13 Score=106.92 Aligned_cols=70 Identities=36% Similarity=0.615 Sum_probs=66.6
Q ss_pred cccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009354 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 183 l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~ 255 (537)
|||+|||.++++++|+++|+.||.|..+.+..+..+..+++|||+|.+.++|++|++.|+|..+ +|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~---~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI---NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE---CccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999988 788875
No 61
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=7.4e-13 Score=138.02 Aligned_cols=171 Identities=22% Similarity=0.350 Sum_probs=134.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
.....++||++||..++++.++++...||.+....++.|..+|.++||||.+|.+..-...|+..|||..+ ....|.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l---gd~~lv 362 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL---GDKKLV 362 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh---cCceeE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999987 445666
Q ss_pred EeeccCCCCCC----------------------CCCCCCcccccCCc--CC-C-------HHHHHHHHcCCCCeeEEEEE
Q 009354 166 VRFADGEREHP----------------------VAPPDKLYVGCLSK--QT-S-------KKEIEEVFSPYGHIEDIFIV 213 (537)
Q Consensus 166 v~~a~~~~~~~----------------------~~~~~~l~V~nl~~--~~-t-------e~~L~~~F~~~G~I~~v~i~ 213 (537)
|..+-...... ..+...|.+.|+-. ++ + -++|+..|++||.|..|.|.
T Consensus 363 vq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ip 442 (500)
T KOG0120|consen 363 VQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIP 442 (500)
T ss_pred eehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecC
Confidence 66554322211 11122233333211 10 1 15667788999999999998
Q ss_pred ee-cC---CCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 214 RD-EL---KQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 214 ~d-~~---g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
++ .. ....|-.||+|.+.+++++|+++|+|.++ ++|.+...|-...
T Consensus 443 r~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF---~nRtVvtsYydeD 492 (500)
T KOG0120|consen 443 RPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF---ANRTVVASYYDED 492 (500)
T ss_pred CCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee---CCcEEEEEecCHH
Confidence 87 33 23457789999999999999999999999 8999999997654
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.47 E-value=1.5e-12 Score=129.89 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=90.9
Q ss_pred CCCCCCCCccccccCCCCCCcc--EEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCC
Q 009354 4 HVGEYITDPPEFNPNSFSGNYC--SWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPD 81 (537)
Q Consensus 4 ~~~~~it~~~l~~~Fs~~G~i~--~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~ 81 (537)
+++-..-...|..-|+--|... -+..|+++. +.+. ....|+.+-.+..++..+++...-....-. ...|.
T Consensus 143 ~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~--sr~~---~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~---f~pPl 214 (608)
T KOG4212|consen 143 GGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRL--SRRN---NTNTMSNDYNNSSNYNLFGLSASFLRSLHI---FSPPL 214 (608)
T ss_pred CcceecccccccccCCCCccccCCCCccccccc--cccc---CccccccccccchhhhcccchhhhhhhccC---CCCCc
Confidence 4444455566666676666542 222333332 2222 223454444455666666664442221111 12333
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCc
Q 009354 82 HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154 (537)
Q Consensus 82 ~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~ 154 (537)
+ .++||+||.+.+..+.|++.|.-.|.|..|.+-.|| -|.++|||.|+|..+-+|-.||..|++.
T Consensus 215 ~-------~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 215 H-------NKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred c-------ceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccC
Confidence 3 689999999999999999999999999999999998 6899999999999999999999888854
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.8e-13 Score=132.14 Aligned_cols=84 Identities=26% Similarity=0.443 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009354 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 84 ~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
+.....++|+|.|||+..-|-||+.+|++||.|++|.|+.+ ..-|||||||+|++.+||++|.++|||..+ ++|+
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~V---EGRk 165 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVV---EGRK 165 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhccee---eceE
Confidence 34455689999999999999999999999999999999886 346899999999999999999999999998 8899
Q ss_pred EEEeeccCC
Q 009354 164 IKVRFADGE 172 (537)
Q Consensus 164 l~v~~a~~~ 172 (537)
|+|+.+..+
T Consensus 166 IEVn~ATar 174 (376)
T KOG0125|consen 166 IEVNNATAR 174 (376)
T ss_pred EEEeccchh
Confidence 999998754
No 64
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.8e-13 Score=121.31 Aligned_cols=79 Identities=27% Similarity=0.462 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++||||||+.++++.||+.+|..||.|.+|+|-+.+ -|||||+|++..||++|+..|+|+.| .+..|+|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~---cG~r~rVE 80 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI---CGSRIRVE 80 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc---cCceEEEE
Confidence 36899999999999999999999999999999998865 58999999999999999999999998 66788998
Q ss_pred eccCCCC
Q 009354 168 FADGERE 174 (537)
Q Consensus 168 ~a~~~~~ 174 (537)
.+.....
T Consensus 81 ~S~G~~r 87 (195)
T KOG0107|consen 81 LSTGRPR 87 (195)
T ss_pred eecCCcc
Confidence 8876544
No 65
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.4e-14 Score=128.74 Aligned_cols=85 Identities=27% Similarity=0.439 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
-..+.-|||||||++.||.||.-+|++||+|++|.|++|+.||+++||||+.|++-.+..-|+..|||..| .+|.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki---~gRtir 108 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI---LGRTIR 108 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee---cceeEE
Confidence 34568899999999999999999999999999999999999999999999999999999999999999998 778999
Q ss_pred EeeccCCC
Q 009354 166 VRFADGER 173 (537)
Q Consensus 166 v~~a~~~~ 173 (537)
|......+
T Consensus 109 VDHv~~Yk 116 (219)
T KOG0126|consen 109 VDHVSNYK 116 (219)
T ss_pred eeeccccc
Confidence 98765443
No 66
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=4.3e-13 Score=128.13 Aligned_cols=91 Identities=26% Similarity=0.410 Sum_probs=80.2
Q ss_pred CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceee
Q 009354 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIF 157 (537)
Q Consensus 78 ~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~ 157 (537)
+..+..-..++.+||||+-|+.+++|.+|++.|+.||+|+.|.|++|+.||+++|||||+|++..+...|.+..+|..|
T Consensus 90 P~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I- 168 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI- 168 (335)
T ss_pred CCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee-
Confidence 3333334567889999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCceeEEEeeccC
Q 009354 158 PGEQASIKVRFADG 171 (537)
Q Consensus 158 ~g~~~~l~v~~a~~ 171 (537)
.++.|-|.+...
T Consensus 169 --dgrri~VDvERg 180 (335)
T KOG0113|consen 169 --DGRRILVDVERG 180 (335)
T ss_pred --cCcEEEEEeccc
Confidence 567777777544
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=4e-13 Score=129.08 Aligned_cols=77 Identities=25% Similarity=0.332 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009354 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
.++|||+||++++||++|+++|+.||.|.+|+|++|+. ++|||||+|.+.++|+.|| .|+|..| .++.|+|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l---~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATI---VDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCee---CCceEEEEe
Confidence 47999999999999999999999999999999998863 5799999999999999999 6999988 678999999
Q ss_pred ccCC
Q 009354 169 ADGE 172 (537)
Q Consensus 169 a~~~ 172 (537)
+...
T Consensus 77 a~~~ 80 (260)
T PLN03120 77 AEDY 80 (260)
T ss_pred ccCC
Confidence 8654
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2.5e-13 Score=131.20 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=76.9
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
....++|+|.|||++..|-||+.+|.+||+|.+|.|+.+++| +||||||+|++.++|++|.++|||..+ .||+|+|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~V---EGRkIEV 168 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVV---EGRKIEV 168 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhccee---eceEEEE
Confidence 445689999999999999999999999999999999998766 899999999999999999999999999 8999999
Q ss_pred EEccCC
Q 009354 257 RIADPK 262 (537)
Q Consensus 257 ~~a~~~ 262 (537)
..+..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 999875
No 69
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.42 E-value=6.2e-12 Score=127.94 Aligned_cols=224 Identities=18% Similarity=0.174 Sum_probs=150.5
Q ss_pred CCCCCCCCccccccCCCCCCccEEeecCC-CCCCCCCCcCccccccchhhccccccc----ccCCcccCCCcc---cccC
Q 009354 4 HVGEYITDPPEFNPNSFSGNYCSWSSDDH-RHNFPDNYHSHHRRHYQYDQMSSEPTD----FFNGQPMPFIGR---KRGF 75 (537)
Q Consensus 4 ~~~~~it~~~l~~~Fs~~G~i~~v~~~~~-~~~~~~~~~~~~~~~~~~~e~A~~a~~----~lng~~l~~~~~---~~~~ 75 (537)
+|+|-.|.+++.+-|+-.+ |.+++..+. +. ......|+|...|++++|++ .|--+.|.+... -..|
T Consensus 17 GLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr-----~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~ 90 (510)
T KOG4211|consen 17 GLPWSATEKEILDFFSNCG-IENLEIPRRNGR-----PSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADW 90 (510)
T ss_pred CCCccccHHHHHHHHhcCc-eeEEEEeccCCC-----cCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccc
Confidence 5899999999998887654 433333322 21 11457889999988887764 343344432222 1223
Q ss_pred CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCc
Q 009354 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE-VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154 (537)
Q Consensus 76 ~~~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~ 154 (537)
.... ....+......|-+++||+.||++||.++|+-.-.|.. |.+..+. .+++.|-|||.|++.+.|++||.... .
T Consensus 91 ~~~~-~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhr-e 167 (510)
T KOG4211|consen 91 VMRP-GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHR-E 167 (510)
T ss_pred cccC-CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHH-H
Confidence 2221 11122245678999999999999999999998755544 5566665 68899999999999999999994432 2
Q ss_pred eeecCCceeEEEeeccCC-------------------------CC---------------C-------------------
Q 009354 155 YIFPGEQASIKVRFADGE-------------------------RE---------------H------------------- 175 (537)
Q Consensus 155 ~~~~g~~~~l~v~~a~~~-------------------------~~---------------~------------------- 175 (537)
.| ..+-|.|..+... +. +
T Consensus 168 ~i---GhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d 244 (510)
T KOG4211|consen 168 NI---GHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQD 244 (510)
T ss_pred hh---ccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccc
Confidence 22 1223333222100 00 0
Q ss_pred -----------C---------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceE
Q 009354 176 -----------P---------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC 223 (537)
Q Consensus 176 -----------~---------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~ 223 (537)
. ......++.++||+..++.++.++|+..-.+ .|.|-..++|+..|-
T Consensus 245 ~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGE 323 (510)
T KOG4211|consen 245 YGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGE 323 (510)
T ss_pred cccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCc
Confidence 0 0012567889999999999999999976544 777777788999999
Q ss_pred EEEEEcCHHHHHHHHHH
Q 009354 224 AFVQFSHREMALAAISG 240 (537)
Q Consensus 224 afV~F~~~~~A~~Ai~~ 240 (537)
|+|+|.+.++|..|+.+
T Consensus 324 AdveF~t~edav~Amsk 340 (510)
T KOG4211|consen 324 ADVEFATGEDAVGAMGK 340 (510)
T ss_pred ceeecccchhhHhhhcc
Confidence 99999999999999863
No 70
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=6.1e-13 Score=123.90 Aligned_cols=83 Identities=34% Similarity=0.521 Sum_probs=77.9
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009354 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~ 255 (537)
....++|-|.||+.+++|++|+++|.+||.|..|.|.+| .+|.+||||||+|.++++|.+||+.|||.-+ +.-.|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---d~LILr 262 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---DNLILR 262 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---ceEEEE
Confidence 346788999999999999999999999999999999999 7999999999999999999999999999887 788999
Q ss_pred EEEccCC
Q 009354 256 VRIADPK 262 (537)
Q Consensus 256 V~~a~~~ 262 (537)
|+|++++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999875
No 71
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=7.3e-13 Score=133.74 Aligned_cols=81 Identities=16% Similarity=0.314 Sum_probs=72.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccH--HHHHHHHHHhcCceeecCCce
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIF--EEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~--e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
......+||||||+++++++||+.+|..||.|.+|.|+++ +| ||||||+|.+. .++.+||..|||..+ +++
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEW---KGR 78 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW---KGG 78 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCee---cCc
Confidence 3445689999999999999999999999999999999954 67 99999999987 789999999999998 788
Q ss_pred eEEEeeccCC
Q 009354 163 SIKVRFADGE 172 (537)
Q Consensus 163 ~l~v~~a~~~ 172 (537)
.|+|..++..
T Consensus 79 ~LKVNKAKP~ 88 (759)
T PLN03213 79 RLRLEKAKEH 88 (759)
T ss_pred eeEEeeccHH
Confidence 9999998743
No 72
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=1.1e-12 Score=106.19 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....+-|||+|||+++|.|++.++|.+||.|..|+|-..+ ..+|-|||.|++..+|++|++.|+|..+ .++.+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~---~~ryl~ 88 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV---DNRYLV 88 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc---CCceEE
Confidence 3456899999999999999999999999999999997655 4579999999999999999999999988 678888
Q ss_pred EeeccCCC
Q 009354 166 VRFADGER 173 (537)
Q Consensus 166 v~~a~~~~ 173 (537)
|-+....+
T Consensus 89 vlyyq~~~ 96 (124)
T KOG0114|consen 89 VLYYQPED 96 (124)
T ss_pred EEecCHHH
Confidence 88876543
No 73
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.8e-12 Score=120.41 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=71.1
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~ 257 (537)
..++||||+|++++..++|+++|++||+|+++.|+.| .+|++||||||+|.|.++|.+|++..|-. | +||+..|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~pi-I---dGR~aNcn 86 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPI-I---DGRKANCN 86 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCc-c---cccccccc
Confidence 4568999999999999999999999999999999999 68999999999999999999999855543 3 78999998
Q ss_pred EccC
Q 009354 258 IADP 261 (537)
Q Consensus 258 ~a~~ 261 (537)
+|..
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8865
No 74
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=7.9e-13 Score=119.99 Aligned_cols=83 Identities=28% Similarity=0.489 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
+.-..|.|-||-+-++-++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++|+++|+|..| .++.|+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l---dgRelrV 87 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL---DGRELRV 87 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee---ccceeee
Confidence 4457899999999999999999999999999999999999999999999999999999999999999987 6789999
Q ss_pred eeccCC
Q 009354 167 RFADGE 172 (537)
Q Consensus 167 ~~a~~~ 172 (537)
.+++-.
T Consensus 88 q~aryg 93 (256)
T KOG4207|consen 88 QMARYG 93 (256)
T ss_pred hhhhcC
Confidence 888644
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2.7e-12 Score=99.67 Aligned_cols=71 Identities=39% Similarity=0.720 Sum_probs=64.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
+|||+|||.++++++|+++|+.||.|..+++..++ +.++|+|||+|.+.++|++|++.++|..+ .++.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~---~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL---GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE---CCEEEee
Confidence 58999999999999999999999999999999886 78999999999999999999999999877 4566665
No 76
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.2e-13 Score=123.46 Aligned_cols=86 Identities=26% Similarity=0.433 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++||||+|..+++|.-|...|-+||.|.+|.+..|..++++||||||+|...|+|.+||+.||+..| -+|.|+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL---~GrtirV 84 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL---FGRTIRV 84 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh---cceeEEE
Confidence 3468999999999999999999999999999999999999999999999999999999999999999998 5689999
Q ss_pred eeccCCCCC
Q 009354 167 RFADGEREH 175 (537)
Q Consensus 167 ~~a~~~~~~ 175 (537)
.++++.+-+
T Consensus 85 N~AkP~kik 93 (298)
T KOG0111|consen 85 NLAKPEKIK 93 (298)
T ss_pred eecCCcccc
Confidence 999876554
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=1.3e-12 Score=135.61 Aligned_cols=82 Identities=30% Similarity=0.558 Sum_probs=78.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
+.|||||||++++|++|.++|+..|.|.+++++.|+.||++|||||++|.+.++|++|++.|||..+ .+++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---NGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---CCceEEeecc
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred cCCCC
Q 009354 170 DGERE 174 (537)
Q Consensus 170 ~~~~~ 174 (537)
...+.
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 76543
No 78
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3e-12 Score=113.64 Aligned_cols=79 Identities=29% Similarity=0.529 Sum_probs=73.2
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
..++|||+||+..+++.||+.+|..||.|..|-|... ..|||||+|+|..+|++|+..|+|+.| +|..|+|++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~---cG~r~rVE~ 81 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDI---CGSRIRVEL 81 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccc---cCceEEEEe
Confidence 4689999999999999999999999999999988875 689999999999999999999999999 999999999
Q ss_pred ccCCCC
Q 009354 259 ADPKKP 264 (537)
Q Consensus 259 a~~~~~ 264 (537)
......
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 876543
No 79
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.35 E-value=1e-10 Score=114.86 Aligned_cols=167 Identities=19% Similarity=0.260 Sum_probs=128.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
....+-.|.|++|-..++|.||-+.++.||.|.-+..+..++ -|.|+|++.+.|+.++.-.....+..+ +...
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~-gq~A 99 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIA-GQQA 99 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCccccc-Cchh
Confidence 345677899999999999999999999999999988877653 899999999999999954433333222 2222
Q ss_pred EEeeccCCC-----CCCCCCCCCcccc--cCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHH
Q 009354 165 KVRFADGER-----EHPVAPPDKLYVG--CLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAA 237 (537)
Q Consensus 165 ~v~~a~~~~-----~~~~~~~~~l~V~--nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~A 237 (537)
-+.++..+. .....+...|.+. |--+.+|.+-|..++...|.|..|.|+++ ..--|.|+|++.+.|.+|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~AqrA 175 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQRA 175 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHHH
Confidence 234442221 1112334445444 44457999999999999999999999986 445799999999999999
Q ss_pred HHHcCCceEecCCCceEEEEEccCCC
Q 009354 238 ISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 238 i~~l~g~~~~~g~g~~l~V~~a~~~~ 263 (537)
...|||..|+.|| .+|+|+||++.+
T Consensus 176 k~alNGADIYsGC-CTLKIeyAkP~r 200 (494)
T KOG1456|consen 176 KAALNGADIYSGC-CTLKIEYAKPTR 200 (494)
T ss_pred Hhhcccccccccc-eeEEEEecCcce
Confidence 9999999999875 899999999864
No 80
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.34 E-value=3.9e-12 Score=99.64 Aligned_cols=70 Identities=33% Similarity=0.551 Sum_probs=63.7
Q ss_pred cccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009354 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 183 l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~ 255 (537)
|||+|||.++++++|+++|+.||.|..+.+.++..+..+++|||+|.+.++|.+|++.+++..+ +|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~---~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI---DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE---CCEEcC
Confidence 7999999999999999999999999999999986688999999999999999999999998888 788874
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=4.6e-12 Score=119.87 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
...+|||+||++.+||++|+++|+.||+|.+|+|++|. +.+|||||+|.+.++|+.|+ .|+|..| ..+.|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l---~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI---VDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee---CCceEEEE
Confidence 35899999999999999999999999999999999984 45689999999999999999 9999988 44567777
Q ss_pred eccC
Q 009354 168 FADG 171 (537)
Q Consensus 168 ~a~~ 171 (537)
....
T Consensus 77 ~~~~ 80 (243)
T PLN03121 77 RWGQ 80 (243)
T ss_pred eCcc
Confidence 6553
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=4.4e-12 Score=98.10 Aligned_cols=70 Identities=40% Similarity=0.692 Sum_probs=64.0
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 94 VAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 94 VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
|+|||.++++++|+++|+.||.|..+++..++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~---~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL---DGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee---CCcEEEe
Confidence 689999999999999999999999999999988899999999999999999999999998776 4566665
No 83
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.33 E-value=2.4e-12 Score=116.90 Aligned_cols=80 Identities=34% Similarity=0.542 Sum_probs=75.4
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
...|.|.||-+.++.++|+.+|++||.|-+|.|..| .++.++|||||.|.+..+|++|+++|+|.++ +|+.|.|.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l---dgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL---DGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee---ccceeeehh
Confidence 467899999999999999999999999999999999 6889999999999999999999999999998 899999999
Q ss_pred ccCC
Q 009354 259 ADPK 262 (537)
Q Consensus 259 a~~~ 262 (537)
|.-.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 8754
No 84
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.31 E-value=6.6e-12 Score=120.75 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=70.6
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
.++|||+||++.+++++|+++|+.||.|++|.|..+.. .+|||||+|.+.++|+.|+. |+|..+ +|+.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l---~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATI---VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCee---CCceEEEEec
Confidence 46899999999999999999999999999999998742 57999999999999999995 999998 8999999998
Q ss_pred cCC
Q 009354 260 DPK 262 (537)
Q Consensus 260 ~~~ 262 (537)
...
T Consensus 78 ~~~ 80 (260)
T PLN03120 78 EDY 80 (260)
T ss_pred cCC
Confidence 654
No 85
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.31 E-value=6.1e-11 Score=126.15 Aligned_cols=105 Identities=24% Similarity=0.392 Sum_probs=81.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
-++|||||.|+.+++|.||..+|+.||+|.+|.++.. ||||||......+|++|+.+|++..+ ..+.|+|.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv---~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKV---ADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccc---cceeeEEe
Confidence 4799999999999999999999999999999998765 58999999999999999999998777 67899999
Q ss_pred eccCCCCCCC---CCCCCcccccCCcCCCHHHHHHHH
Q 009354 168 FADGEREHPV---APPDKLYVGCLSKQTSKKEIEEVF 201 (537)
Q Consensus 168 ~a~~~~~~~~---~~~~~l~V~nl~~~~te~~L~~~F 201 (537)
|+..+.-+.. --...+=|.-||++.-..+|+.++
T Consensus 491 Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 491 WAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred eeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 9987654431 011123344456654334455554
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=4.4e-12 Score=121.27 Aligned_cols=91 Identities=25% Similarity=0.430 Sum_probs=82.1
Q ss_pred ccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEe
Q 009354 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247 (537)
Q Consensus 169 a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 247 (537)
..........+.++|||+.|+++++|.+|+..|+.||.|+.|.|+.| -+|+++|||||+|++..+...|.+..+|..|
T Consensus 90 P~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I- 168 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI- 168 (335)
T ss_pred CCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee-
Confidence 33344444678899999999999999999999999999999999999 7999999999999999999999999999999
Q ss_pred cCCCceEEEEEccCC
Q 009354 248 RGSDQPLVVRIADPK 262 (537)
Q Consensus 248 ~g~g~~l~V~~a~~~ 262 (537)
+|+.|.|.+-..+
T Consensus 169 --dgrri~VDvERgR 181 (335)
T KOG0113|consen 169 --DGRRILVDVERGR 181 (335)
T ss_pred --cCcEEEEEecccc
Confidence 9999999987543
No 87
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4e-11 Score=122.94 Aligned_cols=151 Identities=25% Similarity=0.392 Sum_probs=115.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCC-CCC--Cccc---eEEEEEccHHHHHHHHHHhcCceee
Q 009354 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDK-RTG--QQQG---YCFVKFTIFEEAGNAIRALNGHYIF 157 (537)
Q Consensus 84 ~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg--~~kG---~aFV~F~~~e~A~~Ai~~l~g~~~~ 157 (537)
....-+++||||+||++++|+.|...|..||.+. |...... ..+ -.+| |+|+.|+++.++..-|.++.-
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---- 328 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---- 328 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh----
Confidence 3455689999999999999999999999999875 3333211 111 2456 999999999999988876542
Q ss_pred cCCceeEEEeeccCC-------------------CCCCCCCCCCcccccCCcCCCHHHHHHHHc-CCCCeeEEEEEee-c
Q 009354 158 PGEQASIKVRFADGE-------------------REHPVAPPDKLYVGCLSKQTSKKEIEEVFS-PYGHIEDIFIVRD-E 216 (537)
Q Consensus 158 ~g~~~~l~v~~a~~~-------------------~~~~~~~~~~l~V~nl~~~~te~~L~~~F~-~~G~I~~v~i~~d-~ 216 (537)
...+.-|+|+...-+ ......+.++||||+||.-++.++|..+|. -||.|..+-|-.| +
T Consensus 329 ~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k 408 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK 408 (520)
T ss_pred cccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc
Confidence 112222333332222 112245688999999999999999999998 5999999999999 6
Q ss_pred CCCcceEEEEEEcCHHHHHHHHH
Q 009354 217 LKQSRGCAFVQFSHREMALAAIS 239 (537)
Q Consensus 217 ~g~~~g~afV~F~~~~~A~~Ai~ 239 (537)
-+..+|-|-|+|.+..+-.+||.
T Consensus 409 ~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 409 LKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCCCCCcceeeecccHHHHHHHh
Confidence 78899999999999999999986
No 88
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=7.7e-12 Score=111.68 Aligned_cols=79 Identities=30% Similarity=0.407 Sum_probs=70.7
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
..++|||+|||.++.+.+|.++|.+||.|..|.|..-. ....||||+|++..+|+.||..-+|..+ +|..|+|+|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdy---dg~rLRVEf 79 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDY---DGCRLRVEF 79 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhccccccc---CcceEEEEe
Confidence 46899999999999999999999999999999886532 2467999999999999999999999887 899999999
Q ss_pred ccCC
Q 009354 259 ADPK 262 (537)
Q Consensus 259 a~~~ 262 (537)
+...
T Consensus 80 prgg 83 (241)
T KOG0105|consen 80 PRGG 83 (241)
T ss_pred ccCC
Confidence 8754
No 89
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.5e-12 Score=117.63 Aligned_cols=88 Identities=35% Similarity=0.564 Sum_probs=81.1
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~ 257 (537)
..++||||+|.++++|.-|...|-.||.|.+|.+..| .+.+.||||||+|.-.|+|..||+.||+..+ .||.|+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL---~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL---FGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh---cceeEEEe
Confidence 4578999999999999999999999999999999999 7889999999999999999999999999998 79999999
Q ss_pred EccCCCCCCCCC
Q 009354 258 IADPKKPRTGEL 269 (537)
Q Consensus 258 ~a~~~~~~~~~~ 269 (537)
+|++.+-..+..
T Consensus 86 ~AkP~kikegsq 97 (298)
T KOG0111|consen 86 LAKPEKIKEGSQ 97 (298)
T ss_pred ecCCccccCCCC
Confidence 999876555443
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=6.9e-13 Score=118.10 Aligned_cols=81 Identities=30% Similarity=0.488 Sum_probs=75.6
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
+.-|||||||+++||.||.-+|++||+|++|.+++| .+|+++||||++|+|..+..-|+..|||..+ .||.|+|..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki---~gRtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI---LGRTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee---cceeEEeee
Confidence 457999999999999999999999999999999999 7999999999999999999999999999998 799999987
Q ss_pred ccCCC
Q 009354 259 ADPKK 263 (537)
Q Consensus 259 a~~~~ 263 (537)
....+
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 65543
No 91
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=9.2e-12 Score=104.79 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=74.6
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
..+++|||+||+..++|+.|.++|++.|.|..|.+-.|. +...-|||||+|.+.++|+.|++-++|..+ +.++|+|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL---ddr~ir~ 110 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL---DDRPIRI 110 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc---cccceee
Confidence 357899999999999999999999999999999888873 556789999999999999999999999998 9999999
Q ss_pred EEccCC
Q 009354 257 RIADPK 262 (537)
Q Consensus 257 ~~a~~~ 262 (537)
.|..--
T Consensus 111 D~D~GF 116 (153)
T KOG0121|consen 111 DWDAGF 116 (153)
T ss_pred eccccc
Confidence 997643
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=8.2e-12 Score=105.91 Aligned_cols=82 Identities=33% Similarity=0.475 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..-.|||.++...++|++|.+.|..||+|++|.|-.|+.||-.||||.|+|.+.++|.+||+.|||..| .+..|.|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l---l~q~v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL---LGQNVSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh---hCCceeEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999998 45678888
Q ss_pred eccCC
Q 009354 168 FADGE 172 (537)
Q Consensus 168 ~a~~~ 172 (537)
|+-.+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 87543
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=3.7e-11 Score=93.72 Aligned_cols=74 Identities=39% Similarity=0.677 Sum_probs=66.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009354 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
+|||+|||.++++++|+++|+.||.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+ .++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~---~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL---GGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEeC
Confidence 4899999999999999999999999999999988744 7899999999999999999999999876 567777653
No 94
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=7.3e-12 Score=123.13 Aligned_cols=167 Identities=21% Similarity=0.245 Sum_probs=126.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEH----GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
..-.|.+++||+++++.|+.++|..- |..+.|.+++.+ +|+..|-|||.|..+++|..||.+..+. | ..|.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~-i---GqRY 234 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQN-I---GQRY 234 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHH-H---hHHH
Confidence 35678899999999999999999632 345666666665 7999999999999999999999553321 2 2222
Q ss_pred EEEeeccCC----------------------------CCC-CCCCCCCcccccCCcCCCHHHHHHHHcCCCC-eeE--EE
Q 009354 164 IKVRFADGE----------------------------REH-PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH-IED--IF 211 (537)
Q Consensus 164 l~v~~a~~~----------------------------~~~-~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~-I~~--v~ 211 (537)
|.+.++... ... ......+|.+++||++.+.+||.+||..|.. |.. |.
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVH 314 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVH 314 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeE
Confidence 332222100 000 0123568999999999999999999999865 444 78
Q ss_pred EEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 212 i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
++.+..|+..|-|||+|.+.++|..|..+.+++.. ..|.|.|--+...
T Consensus 315 mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m---k~RYiEvfp~S~e 362 (508)
T KOG1365|consen 315 MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM---KSRYIEVFPCSVE 362 (508)
T ss_pred EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc---ccceEEEeeccHH
Confidence 88888899999999999999999999999988875 6788888776543
No 95
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=4.5e-12 Score=116.09 Aligned_cols=136 Identities=25% Similarity=0.322 Sum_probs=114.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|+-..++|+-|.++|-..|+|..|.|..++ .++.| ||||.|.++.++.-|++.+||..+ .+..+++.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l---~~~e~q~~ 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDL---EEDEEQRT 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchh---ccchhhcc
Confidence 45899999999999999999999999999999998886 67777 999999999999999999999887 34455543
Q ss_pred eccCCCCCCCCCCCCccccc----CCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCC
Q 009354 168 FADGEREHPVAPPDKLYVGC----LSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243 (537)
Q Consensus 168 ~a~~~~~~~~~~~~~l~V~n----l~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g 243 (537)
++.|+ |...++++.+...|+.-|.++.+++..+.+|+++.++|+++-...+.-.++....+
T Consensus 83 ---------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 83 ---------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred ---------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 33444 67789999999999999999999999998899999999988766665556554333
No 96
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.5e-11 Score=115.65 Aligned_cols=104 Identities=42% Similarity=0.681 Sum_probs=93.5
Q ss_pred ceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHH
Q 009354 161 QASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISG 240 (537)
Q Consensus 161 ~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~ 240 (537)
+|.|.|+.++.+.+ ....++||||-|...-.|||++.+|..||.|++|.+.+..+|.+||+|||+|.+..+|..||..
T Consensus 2 nrpiqvkpadsesr--g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 2 NRPIQVKPADSESR--GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCCccccccccccC--CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 46677777765543 3367899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEecCCCceEEEEEccCCCCCC
Q 009354 241 LNGTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 241 l~g~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
|+|...+.|....|.|+|++..++|.
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHH
Confidence 99999999999999999999877664
No 97
>smart00362 RRM_2 RNA recognition motif.
Probab=99.22 E-value=4.9e-11 Score=92.52 Aligned_cols=72 Identities=40% Similarity=0.659 Sum_probs=66.2
Q ss_pred CcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009354 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~ 257 (537)
+|||+|||..+++++|+++|+.||.|..+.+..+. +..+++|||+|.+.++|.+|++.+++..+ .|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~---~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKL---GGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEE---CCEEEeeC
Confidence 58999999999999999999999999999998876 67889999999999999999999999887 78888763
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=99.21 E-value=3.1e-11 Score=122.16 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=71.4
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCH--HHHHHHHHHcCCceEecCCCceEE
Q 009354 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHR--EMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~--~~A~~Ai~~l~g~~~~~g~g~~l~ 255 (537)
....+||||||++.+++++|+.+|+.||.|..|.|+++ +| ||||||+|.+. .++.+||..|||..+ .|+.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEW---KGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW---KGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCee---cCceeE
Confidence 34578999999999999999999999999999999954 44 99999999977 789999999999998 799999
Q ss_pred EEEccCC
Q 009354 256 VRIADPK 262 (537)
Q Consensus 256 V~~a~~~ 262 (537)
|..|++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9998763
No 99
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=7e-11 Score=95.86 Aligned_cols=79 Identities=30% Similarity=0.406 Sum_probs=71.3
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
..+.|||+|||+.+|.+++.++|.+||.|..|+|-.+ ...+|-|||.|++..+|.+|++.|+|..+ +++.|.|-|
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~---~~ryl~vly 91 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNV---DNRYLVVLY 91 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhccccc---CCceEEEEe
Confidence 4577999999999999999999999999999999765 23689999999999999999999999998 899999998
Q ss_pred ccCC
Q 009354 259 ADPK 262 (537)
Q Consensus 259 a~~~ 262 (537)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7653
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.18 E-value=8.8e-11 Score=92.08 Aligned_cols=61 Identities=28% Similarity=0.481 Sum_probs=53.7
Q ss_pred HHHHHHHhh----ccCCeEEEE-eccCCCC--CCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 103 EEDIRPLFE----EHGNVIEVV-LPKDKRT--GQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 103 e~~L~~~F~----~~G~I~~v~-i~~d~~t--g~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
+++|+++|+ .||.|.+|. |+.++.+ |+++|||||+|.+.++|.+|++.|||..+ .++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~---~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF---DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEe
Confidence 578999998 999999995 7777666 99999999999999999999999999987 6677765
No 101
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=4.2e-11 Score=101.64 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=77.3
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~ 257 (537)
....|||.++...+++++|.+.|..||+|+.|.+..| .+|..+|||+|+|++.+.|.+||+.+||..+ -+.+|.|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l---l~q~v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL---LGQNVSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh---hCCceeEE
Confidence 3567999999999999999999999999999999999 7899999999999999999999999999998 47999999
Q ss_pred EccCCCCC
Q 009354 258 IADPKKPR 265 (537)
Q Consensus 258 ~a~~~~~~ 265 (537)
|+-.+.+.
T Consensus 148 w~Fv~gp~ 155 (170)
T KOG0130|consen 148 WCFVKGPE 155 (170)
T ss_pred EEEecCCc
Confidence 99766543
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1.2e-10 Score=110.30 Aligned_cols=76 Identities=25% Similarity=0.290 Sum_probs=69.0
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
..+|||+||++.+|+++|+++|+.||.|++|+|++| +..++||||+|.+.++|+.|+ .|+|..+ .++.|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l---~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATI---VDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCee---CCceEEEEeC
Confidence 468999999999999999999999999999999998 446689999999999999999 5999998 7899999876
Q ss_pred cC
Q 009354 260 DP 261 (537)
Q Consensus 260 ~~ 261 (537)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 54
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.14 E-value=6.7e-11 Score=122.97 Aligned_cols=83 Identities=28% Similarity=0.433 Sum_probs=78.7
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
+.|||||+++++++++|.++|+..|.|..++++.| .+|+.+||||++|.+.++|.+|++.|||..+ .||+|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---NGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---CCceEEeecc
Confidence 78999999999999999999999999999999999 7899999999999999999999999999998 8999999999
Q ss_pred cCCCCCC
Q 009354 260 DPKKPRT 266 (537)
Q Consensus 260 ~~~~~~~ 266 (537)
...+.+.
T Consensus 96 ~~~~~~~ 102 (435)
T KOG0108|consen 96 SNRKNAE 102 (435)
T ss_pred cccchhH
Confidence 8766544
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.14 E-value=1.2e-10 Score=108.14 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=119.2
Q ss_pred CCCCCCCCcc----ccccCCCCCCccEEeec-CCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCC
Q 009354 4 HVGEYITDPP----EFNPNSFSGNYCSWSSD-DHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHP 78 (537)
Q Consensus 4 ~~~~~it~~~----l~~~Fs~~G~i~~v~~~-~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~ 78 (537)
||+|.|--+. |+.+||+||+|..|... .-+. .+..++.|...+.|..|+..|+|.++.++..++.+...
T Consensus 16 nLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~Km------RGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 16 NLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKM------RGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred hccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCc------cCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 5677775444 55599999999544443 2221 15678899999999999999999999999888766544
Q ss_pred CCCCC----------------------------------------------CCCCCCCEEEEcCCCCCCCHHHHHHHhhc
Q 009354 79 APDHI----------------------------------------------NDSGIPAKLYVAPVPRTATEEDIRPLFEE 112 (537)
Q Consensus 79 ~~~~~----------------------------------------------~~~~~~~~LfVgnLp~~~te~~L~~~F~~ 112 (537)
+.+.. ....+...||+-|||..++.+.|..+|+.
T Consensus 90 ~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~q 169 (221)
T KOG4206|consen 90 DSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQ 169 (221)
T ss_pred ccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhh
Confidence 22111 11345678999999999999999999999
Q ss_pred cCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeecc
Q 009354 113 HGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFAD 170 (537)
Q Consensus 113 ~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 170 (537)
|.--.+|+++... +|.|||+|.+...|..|...|.|-.|-. ...++|.+++
T Consensus 170 f~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~--~~~m~i~~a~ 220 (221)
T KOG4206|consen 170 FPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITK--KNTMQITFAK 220 (221)
T ss_pred CcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceecc--CceEEecccC
Confidence 9989999998765 4799999999999999999999987743 4667777654
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=2.4e-10 Score=88.22 Aligned_cols=70 Identities=40% Similarity=0.665 Sum_probs=64.1
Q ss_pred cccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009354 185 VGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 185 V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~ 257 (537)
|+||+..+++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|.+|++.+++..+ +|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~---~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL---DGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee---CCcEEEeC
Confidence 68999999999999999999999999999874 578899999999999999999999999887 78888773
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.1e-10 Score=121.99 Aligned_cols=163 Identities=29% Similarity=0.511 Sum_probs=134.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCc
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEH-----------G-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~-----------G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~ 154 (537)
...+.+||+++|..++++.+-.+|..- | .+..+.|-.++ .||||+|.+.++|..|+ .+++.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~-~~~~~ 245 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAM-ALDGI 245 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhh-cccch
Confidence 356899999999999999999988743 3 36777766554 59999999999999998 77776
Q ss_pred eeecCCceeEEEeeccCCCCC---------------------CCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEE
Q 009354 155 YIFPGEQASIKVRFADGEREH---------------------PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIV 213 (537)
Q Consensus 155 ~~~~g~~~~l~v~~a~~~~~~---------------------~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~ 213 (537)
.+ .+..+++......... .....+.|||++|+..+++..++++...||.+....++
T Consensus 246 ~f---~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv 322 (500)
T KOG0120|consen 246 IF---EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLV 322 (500)
T ss_pred hh---CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheee
Confidence 54 5566666544322111 11235789999999999999999999999999999999
Q ss_pred ee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 214 RD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 214 ~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
.| .+|.++||||.+|.+......|+..|||..+ +++.|.|..|-..
T Consensus 323 ~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l---gd~~lvvq~A~~g 369 (500)
T KOG0120|consen 323 KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL---GDKKLVVQRAIVG 369 (500)
T ss_pred cccccccccceeeeeeeCCcchhhhhcccchhhh---cCceeEeehhhcc
Confidence 99 6789999999999999999999999999998 7899999988753
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=3.2e-10 Score=88.33 Aligned_cols=74 Identities=38% Similarity=0.656 Sum_probs=68.4
Q ss_pred CcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+..+++|||+|.+.++|..|++.+++..+ .|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~---~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL---GGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEeC
Confidence 48999999999999999999999999999999886667799999999999999999999999987 789998864
No 108
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.12 E-value=1.1e-10 Score=109.60 Aligned_cols=123 Identities=16% Similarity=0.248 Sum_probs=95.4
Q ss_pred ccchhhcccccccccCCcccCCCcccccC--CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccC
Q 009354 47 HYQYDQMSSEPTDFFNGQPMPFIGRKRGF--NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKD 124 (537)
Q Consensus 47 ~~~~~e~A~~a~~~lng~~l~~~~~~~~~--~~~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d 124 (537)
.+....+..++-..-+++.+.....+... +.-++...+-.....+||+|.|..+++++.|-..|.+|-.-...++++|
T Consensus 146 ~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd 225 (290)
T KOG0226|consen 146 SFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD 225 (290)
T ss_pred CcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhcccccc
Confidence 34333444455556666666433333322 1224444455666799999999999999999999999998888999999
Q ss_pred CCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCC
Q 009354 125 KRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGE 172 (537)
Q Consensus 125 ~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 172 (537)
++||+++||+||.|.+..++.+|+++|+|+.+ +.++|+++.+..+
T Consensus 226 kRTgKSkgygfVSf~~pad~~rAmrem~gkyV---gsrpiklRkS~wk 270 (290)
T KOG0226|consen 226 KRTGKSKGYGFVSFRDPADYVRAMREMNGKYV---GSRPIKLRKSEWK 270 (290)
T ss_pred ccccccccceeeeecCHHHHHHHHHhhccccc---ccchhHhhhhhHH
Confidence 99999999999999999999999999999988 7888888776544
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=3.1e-10 Score=84.74 Aligned_cols=56 Identities=36% Similarity=0.637 Sum_probs=50.0
Q ss_pred HHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009354 106 IRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 106 L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
|+++|++||.|.+|++..++ +|+|||+|.+.++|++|++.|||..+ .++.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~---~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF---NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE---TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEEEC
Confidence 78999999999999998764 58999999999999999999999987 6789999885
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=2.3e-11 Score=130.87 Aligned_cols=219 Identities=16% Similarity=0.202 Sum_probs=159.3
Q ss_pred ccccCCCCCCccEEeecCCCCCCCCCCcC-ccccccchhhcccccccccCCcccCCCcccccCCCCCCCCC------CCC
Q 009354 14 EFNPNSFSGNYCSWSSDDHRHNFPDNYHS-HHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHI------NDS 86 (537)
Q Consensus 14 l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~-~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~~~------~~~ 86 (537)
....|..+|++.+|..++.|. +.... -..+.++...+++.+. ..+|..+.+....+..+.+..... ++.
T Consensus 589 ~~~~~k~~~~vekv~~p~~g~---k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~ 664 (881)
T KOG0128|consen 589 QRRQFKGEGNVEKVNGPKRGF---KAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLADAEEKEENFKVSPNEI 664 (881)
T ss_pred hHHHhhcccccccccCccccc---cccccchhhhhhccccchhhcc-cccccccCCccccCCCCCchhhhhccCcCchHH
Confidence 345677789998877665431 11100 1112333333343333 344444444445555544422221 122
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
....++||.||+..+.+.+|...|..+|.+..+.+...+++++.||+|||.|...+++.+||....+..+ |
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~--g------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF--G------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh--h-------
Confidence 3457899999999999999999999999888887776677899999999999999999999954444332 1
Q ss_pred eeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceE
Q 009354 167 RFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFT 246 (537)
Q Consensus 167 ~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~ 246 (537)
...++|.|.|+..|.++|+.+|+++|.+.+++++....|+.+|.+||.|.+..++.+++...+...+
T Consensus 736 -------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~ 802 (881)
T KOG0128|consen 736 -------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGK 802 (881)
T ss_pred -------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhh
Confidence 2468999999999999999999999999999998888999999999999999999999988887766
Q ss_pred ecCCCceEEEEEccC
Q 009354 247 MRGSDQPLVVRIADP 261 (537)
Q Consensus 247 ~~g~g~~l~V~~a~~ 261 (537)
..+.+.|..+.+
T Consensus 803 ---rE~~~~v~vsnp 814 (881)
T KOG0128|consen 803 ---RENNGEVQVSNP 814 (881)
T ss_pred ---hhcCccccccCC
Confidence 456666766655
No 111
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.10 E-value=5.7e-11 Score=111.40 Aligned_cols=167 Identities=16% Similarity=0.273 Sum_probs=134.6
Q ss_pred CCEEEEcCCCCCCCHHH-H--HHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 89 PAKLYVAPVPRTATEED-I--RPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~-L--~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
-..+|++++-.++..+- | ...|+.|-.+...+++++. -+.-++++|+.|.....-.++-..-+++.+ +...++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki---~~~~VR 171 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI---GKPPVR 171 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc---cCccee
Confidence 46778888877766554 3 7888888888888888885 678889999999988877777766677766 445555
Q ss_pred EeeccCCCC----CCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHH
Q 009354 166 VRFADGERE----HPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISG 240 (537)
Q Consensus 166 v~~a~~~~~----~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~ 240 (537)
+.....-.. .-.....+||.|.|..+++++.|...|.+|-.....++++| .+|+++||+||.|.+..++.+|+..
T Consensus 172 ~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 172 LAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred eccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 544332211 11345689999999999999999999999999999999999 7999999999999999999999999
Q ss_pred cCCceEecCCCceEEEEEccCC
Q 009354 241 LNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 241 l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
|+|+++ +.++|++....-+
T Consensus 252 m~gkyV---gsrpiklRkS~wk 270 (290)
T KOG0226|consen 252 MNGKYV---GSRPIKLRKSEWK 270 (290)
T ss_pred hccccc---ccchhHhhhhhHH
Confidence 999998 8899988765543
No 112
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.09 E-value=1.4e-10 Score=115.38 Aligned_cols=175 Identities=19% Similarity=0.294 Sum_probs=139.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...+++|+|++..++.+.++..+|..+|.+..+.+........++|+++|.|...+.+..|+ .+.+..++.+......+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l-~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAAL-EESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHH-HhhhccccccccccCcc
Confidence 45689999999999999999999999998888888887778999999999999999999999 55554333332222222
Q ss_pred eeccC------CCCCCCCCCCCcc-cccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHH
Q 009354 167 RFADG------EREHPVAPPDKLY-VGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAI 238 (537)
Q Consensus 167 ~~a~~------~~~~~~~~~~~l~-V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai 238 (537)
..... ..........++| |++++..+++++|+.+|..+|.|..+++..+ .++..+|||+|.|.+...+..++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 22221 1111223445666 9999999999999999999999999999888 68899999999999999999998
Q ss_pred HHcCCceEecCCCceEEEEEccCCCCCC
Q 009354 239 SGLNGTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 239 ~~l~g~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
.. ....+ .++++.+.+..+.....
T Consensus 245 ~~-~~~~~---~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 245 ND-QTRSI---GGRPLRLEEDEPRPKSD 268 (285)
T ss_pred hc-ccCcc---cCcccccccCCCCcccc
Confidence 87 67666 78999999998765443
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.08 E-value=4.8e-10 Score=83.72 Aligned_cols=56 Identities=39% Similarity=0.608 Sum_probs=50.9
Q ss_pred HHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 197 IEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 197 L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
|+++|++||.|..+.+..+. +++|||+|.+.++|.+|++.|||..+ +|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~---~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQF---NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEE---TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEEEC
Confidence 68999999999999998753 59999999999999999999999998 8999999986
No 114
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.05 E-value=7.4e-10 Score=109.41 Aligned_cols=79 Identities=38% Similarity=0.644 Sum_probs=75.2
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
.++|||+||+..+++++|+++|..||.|..+.+..| .++..+|||||+|.+.++|..|++.++|..+ .|+.|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~---~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL---EGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE---CCceeEeec
Confidence 589999999999999999999999999999999999 5899999999999999999999999999998 899999999
Q ss_pred ccC
Q 009354 259 ADP 261 (537)
Q Consensus 259 a~~ 261 (537)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 753
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.99 E-value=1.7e-09 Score=84.68 Aligned_cols=60 Identities=28% Similarity=0.457 Sum_probs=53.1
Q ss_pred HHHHHHHHc----CCCCeeEEE-EEee-cC--CCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 194 KKEIEEVFS----PYGHIEDIF-IVRD-EL--KQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 194 e~~L~~~F~----~~G~I~~v~-i~~d-~~--g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
+++|+++|+ +||.|.+|. |..+ .+ +.++|||||+|.+.++|.+|+..|||..+ +|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~---~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF---DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEe
Confidence 578888888 999999995 6555 44 88999999999999999999999999998 8899876
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=6.2e-10 Score=120.50 Aligned_cols=164 Identities=24% Similarity=0.353 Sum_probs=138.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+....++||+|||+..+++.+|+..|..+|.|.+|.|.+-+ -+.-.-||||.|.+...+-.|+.++.+..|..| .+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g---~~ 443 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG---TH 443 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccC---cc
Confidence 45578999999999999999999999999999999887653 355556999999999999999999999887444 44
Q ss_pred EEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCc
Q 009354 165 KVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGT 244 (537)
Q Consensus 165 ~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 244 (537)
++.+... .....+.+++++|..++....|...|..||.|..|.+-. ..-|++|.|.+...+..|+..|.|.
T Consensus 444 r~glG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 444 RIGLGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred ccccccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcC
Confidence 4444433 244668899999999999999999999999999987755 4569999999999999999999999
Q ss_pred eEecCCCceEEEEEccCC
Q 009354 245 FTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 245 ~~~~g~g~~l~V~~a~~~ 262 (537)
.+ .+..+.|+|.|+...
T Consensus 515 p~-G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 515 PL-GGPPRRLRVDLASPP 531 (975)
T ss_pred cC-CCCCcccccccccCC
Confidence 86 344678999999865
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.96 E-value=1.8e-09 Score=98.74 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEH-GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....-+||+.||.-+.+.+|..+|.+| |.|..+++.|+++||.|||||||+|++.+.|+-|-+.||+..| .++.|.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl---~e~lL~ 123 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL---MEHLLE 123 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh---hhheee
Confidence 445679999999999999999999998 7888889989999999999999999999999999999999866 345666
Q ss_pred EeeccC
Q 009354 166 VRFADG 171 (537)
Q Consensus 166 v~~a~~ 171 (537)
+.+-..
T Consensus 124 c~vmpp 129 (214)
T KOG4208|consen 124 CHVMPP 129 (214)
T ss_pred eEEeCc
Confidence 665433
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.94 E-value=1.4e-08 Score=108.47 Aligned_cols=79 Identities=27% Similarity=0.587 Sum_probs=73.3
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
+++||||+|+..+++.||.++|+.||+|.+|.++. +|++|||+..++.+|.+|+.+|++..+ .++.|+|.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv---~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKV---ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccc---cceeeEEeee
Confidence 57899999999999999999999999999999988 899999999999999999999998887 7999999999
Q ss_pred cCCCCCC
Q 009354 260 DPKKPRT 266 (537)
Q Consensus 260 ~~~~~~~ 266 (537)
..+..+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 8765443
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9e-10 Score=107.60 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=77.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009354 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~ 255 (537)
..+.+.|||+.|++-++++||.-+|+.||.|..|.|++| .+|.+-.||||+|.+.+++++|.-+|++..+ +++.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI---DDrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI---DDRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee---ccceEE
Confidence 456789999999999999999999999999999999999 7899999999999999999999999999998 999999
Q ss_pred EEEccC
Q 009354 256 VRIADP 261 (537)
Q Consensus 256 V~~a~~ 261 (537)
|.|+..
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 999865
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.3e-09 Score=106.51 Aligned_cols=82 Identities=23% Similarity=0.457 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
.+...|||..|.+-++++||.-+|+.||.|.+|.|++|..||.+.-||||+|.+.+++++|.-.|.+..| ..+.|.|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI---DDrRIHV 313 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI---DDRRIHV 313 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee---ccceEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999999999877 5678999
Q ss_pred eeccC
Q 009354 167 RFADG 171 (537)
Q Consensus 167 ~~a~~ 171 (537)
.++..
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 98753
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=99.64 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.+....+||||+|-..++|.+|++.|.+||+|.+|.+...+ |+|||+|.+.++|+.|.+++-++.++. +.+|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~--G~Rl 295 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVIN--GFRL 295 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeec--ceEE
Confidence 44567899999999999999999999999999999998774 699999999999999998877666664 5889
Q ss_pred EEeeccC
Q 009354 165 KVRFADG 171 (537)
Q Consensus 165 ~v~~a~~ 171 (537)
+|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999887
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=9.4e-09 Score=100.74 Aligned_cols=78 Identities=31% Similarity=0.548 Sum_probs=69.8
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009354 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~ 257 (537)
....+|||++|.+.++|.+|+++|.+||+|+.|.++. .+++|||+|.++++|+.|.++.-+..+. +|+.|+|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI--~G~Rl~i~ 298 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVI--NGFRLKIK 298 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeee--cceEEEEE
Confidence 3457899999999999999999999999999999998 5789999999999999998877665554 78999999
Q ss_pred EccCC
Q 009354 258 IADPK 262 (537)
Q Consensus 258 ~a~~~ 262 (537)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99983
No 123
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=3.9e-09 Score=99.20 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=111.9
Q ss_pred CCCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCC---
Q 009354 2 EGHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHP--- 78 (537)
Q Consensus 2 ~~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~--- 78 (537)
.|+|++..+++++-..|..||.|-.+..--. + + +++|....+|..|+..+||+.|.+....+.|...
T Consensus 6 vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g-------f--~-fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 6 IGRLPYRARERDVERFFKGYGKIPDADMKNG-------F--G-FVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ecccCCccchhHHHHHHhhccccccceeecc-------c--c-eeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 5899999999999999999999944322111 1 1 5789999999999999999999776544444331
Q ss_pred ----C--CCC-------CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHH
Q 009354 79 ----A--PDH-------INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAG 145 (537)
Q Consensus 79 ----~--~~~-------~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 145 (537)
. ... .......+.|+|.||...+.+.+|.+.|+.+|.+....+ .++++||+|++.++|.
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAK 147 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhh
Confidence 0 000 011345688999999999999999999999999855544 2359999999999999
Q ss_pred HHHHHhcCceeecCCceeEEEee
Q 009354 146 NAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 146 ~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
+|++.|+|..+ .++.|.+..
T Consensus 148 ra~~~l~~~~~---~~~~l~~~~ 167 (216)
T KOG0106|consen 148 RALEKLDGKKL---NGRRISVEK 167 (216)
T ss_pred hcchhccchhh---cCceeeecc
Confidence 99999999998 556777733
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.76 E-value=1.5e-08 Score=104.48 Aligned_cols=82 Identities=24% Similarity=0.374 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
-.++|||.+|...+--.||+.||++||.|+..+|+.+..+--.++||||++.+.++|.+||+.|+.+.| .++.|.|.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL---HGrmISVE 480 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL---HGRMISVE 480 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh---cceeeeee
Confidence 468999999999999999999999999999999999988888899999999999999999999999998 78899999
Q ss_pred eccCC
Q 009354 168 FADGE 172 (537)
Q Consensus 168 ~a~~~ 172 (537)
.++.+
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 88644
No 125
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=1.2e-08 Score=105.90 Aligned_cols=156 Identities=23% Similarity=0.275 Sum_probs=104.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
+...++|+|-|||.+|++++|+++|+.||+|.+|+..+. .+|.+||+|.|..+|++|+++|++.++ .++.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~---~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREI---AGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHh---hhhhhc
Confidence 456799999999999999999999999999999776444 468999999999999999999999988 445555
Q ss_pred EeeccCCCCCC----------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceE
Q 009354 166 VRFADGEREHP----------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC 223 (537)
Q Consensus 166 v~~a~~~~~~~----------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~ 223 (537)
.....+... .-....+|+ .|.+..+..-++..|.-+|.+.. +.. +.-+-.
T Consensus 144 --~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~----~~~~hq 215 (549)
T KOG4660|consen 144 --RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RET----PLLNHQ 215 (549)
T ss_pred --CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccc----cchhhh
Confidence 111111111 001122332 37777777667777777777654 222 112225
Q ss_pred EEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccC
Q 009354 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 224 afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~ 261 (537)
-|++|.+..++..+...+ |..+ .+....+.++.+
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~---s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLI---SNSSGVITFSGP 249 (549)
T ss_pred hhhhhccccchhhcccCC-ceec---CCCCceEEecCC
Confidence 578888888875555422 4433 445555555544
No 126
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.72 E-value=6.7e-08 Score=100.21 Aligned_cols=84 Identities=23% Similarity=0.242 Sum_probs=68.7
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
...|||+|||.+++..+|+++|..||.|+...|... ..++..+||||+|.+.+++..||++- -..+ ++++|.|+-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~i---g~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEI---GGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-cccc---CCeeEEEEe
Confidence 445999999999999999999999999999988775 34555599999999999999999865 2222 799999998
Q ss_pred ccCCCCCCC
Q 009354 259 ADPKKPRTG 267 (537)
Q Consensus 259 a~~~~~~~~ 267 (537)
.+......+
T Consensus 364 k~~~~~g~~ 372 (419)
T KOG0116|consen 364 KRPGFRGNG 372 (419)
T ss_pred ccccccccc
Confidence 776544433
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.65 E-value=9.7e-08 Score=91.83 Aligned_cols=84 Identities=23% Similarity=0.421 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
......+|+|.|||..|+++||+++|+.||.+..+.|.+++ .|++.|.|-|.|...++|++|++.++|..+ .++.+
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~l---dG~~m 154 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVAL---DGRPM 154 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCccc---CCcee
Confidence 33445889999999999999999999999999999999997 899999999999999999999999999554 44667
Q ss_pred EEeeccCC
Q 009354 165 KVRFADGE 172 (537)
Q Consensus 165 ~v~~a~~~ 172 (537)
++......
T Consensus 155 k~~~i~~~ 162 (243)
T KOG0533|consen 155 KIEIISSP 162 (243)
T ss_pred eeEEecCc
Confidence 77666543
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.63 E-value=5.8e-08 Score=89.07 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=73.1
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCC-CCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009354 178 APPDKLYVGCLSKQTSKKEIEEVFSPY-GHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~-G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~ 255 (537)
.....+||+.++..+.+.++..+|..| |.|..+++-++ .+|.++|||||+|++.+.|..|-+.||++.+ .++.|.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl---~e~lL~ 123 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL---MEHLLE 123 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh---hhheee
Confidence 345689999999999999999999998 56777788677 7999999999999999999999999999988 689999
Q ss_pred EEEccCC
Q 009354 256 VRIADPK 262 (537)
Q Consensus 256 V~~a~~~ 262 (537)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987765
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.55 E-value=1.3e-07 Score=97.57 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=74.5
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
.++|||.+|...+...+|+++|++||+|+..+|+.+ .+-..++|+||++.+.++|.+||+.|+...+ .|+.|.|..
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL---HGrmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL---HGRMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh---cceeeeeee
Confidence 578999999999999999999999999999999998 5566899999999999999999999999998 899999999
Q ss_pred ccCC
Q 009354 259 ADPK 262 (537)
Q Consensus 259 a~~~ 262 (537)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8764
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.54 E-value=4.3e-07 Score=75.05 Aligned_cols=82 Identities=24% Similarity=0.347 Sum_probs=70.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeec-CCceeEEE
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEH--GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP-GEQASIKV 166 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~-g~~~~l~v 166 (537)
+||.|+|||...|.++|.+++... |...-+-+..|..++.+.|||||.|.+.+.|.+..+.++|..+.. ...+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988753 778888889999999999999999999999999999999987732 23456777
Q ss_pred eeccC
Q 009354 167 RFADG 171 (537)
Q Consensus 167 ~~a~~ 171 (537)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77753
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=7e-07 Score=88.57 Aligned_cols=155 Identities=20% Similarity=0.205 Sum_probs=112.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
.+...-+..++||+..++.+|-.+|.-.......+.+-....|+..|.|.|.|.|.|.-+.|++.-. ..+ .++.|.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhk-hh~---g~ryie 132 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHK-HHM---GTRYIE 132 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhh-hhc---cCCcee
Confidence 3445667788999999999999999854222111222222246667899999999999999995433 333 467888
Q ss_pred EeeccCCCCCC------------C--CCCCCcccccCCcCCCHHHHHHHHcC----CCCeeEEEEEeecCCCcceEEEEE
Q 009354 166 VRFADGEREHP------------V--APPDKLYVGCLSKQTSKKEIEEVFSP----YGHIEDIFIVRDELKQSRGCAFVQ 227 (537)
Q Consensus 166 v~~a~~~~~~~------------~--~~~~~l~V~nl~~~~te~~L~~~F~~----~G~I~~v~i~~d~~g~~~g~afV~ 227 (537)
|..+..+.--. . ...-.|.+++||+++++.++.+||.. -|..+.|.++...+|+..|-|||.
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 87776542211 1 11234667899999999999999963 245778888887889999999999
Q ss_pred EcCHHHHHHHHHHcCCc
Q 009354 228 FSHREMALAAISGLNGT 244 (537)
Q Consensus 228 F~~~~~A~~Ai~~l~g~ 244 (537)
|...++|..|+.+-.+.
T Consensus 213 fa~ee~aq~aL~khrq~ 229 (508)
T KOG1365|consen 213 FACEEDAQFALRKHRQN 229 (508)
T ss_pred ecCHHHHHHHHHHHHHH
Confidence 99999999999865543
No 132
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.51 E-value=5.5e-08 Score=62.97 Aligned_cols=28 Identities=54% Similarity=1.076 Sum_probs=25.8
Q ss_pred CCCceeeCCC-CCeeeeeCCccceeccCC
Q 009354 434 CDWSEHTCPD-GNKYYYNCETCESRWDKP 461 (537)
Q Consensus 434 ~~w~~~~~~~-g~~y~~~~~~~~~~w~~p 461 (537)
..|.++.+++ |+.||||..|++|+|++|
T Consensus 3 ~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 3 PGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp TTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred cCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 4599999877 999999999999999998
No 133
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.49 E-value=1e-06 Score=81.56 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCC--CcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK--QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
..++|||.+||.++...+|..+|..|-.-+.+.|.....+ ..+-+|||+|.+..+|..|+..|||..|-...+..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999988888877665322 35679999999999999999999999986667899999
Q ss_pred EEccCCCC
Q 009354 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
++++....
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99987543
No 134
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.47 E-value=4.7e-07 Score=96.10 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCC---CCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKR---TGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
+....+|||+||++.++|+.|...|..||+|.+++|+.-+. ..+.+-+|||-|-+..+|++|++.|+|..+ ...
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---MEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---eee
Confidence 44568999999999999999999999999999999986542 245667999999999999999999999988 678
Q ss_pred eEEEeeccC
Q 009354 163 SIKVRFADG 171 (537)
Q Consensus 163 ~l~v~~a~~ 171 (537)
.+++.|++.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999999853
No 135
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.47 E-value=4.1e-06 Score=82.20 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=62.4
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCC--eeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 181 DKLYVGCLSKQTSKKEIEEVFSPYGH--IEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~--I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
.++|||||-+.+|++||.+.+...|. |.+++++.+ .+|.+||||+|...+..+.++.++.|-.+.+ .|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i---HGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI---HGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee---cCCCCee
Confidence 47999999999999999999987764 778888888 5789999999999999999999999998887 5554444
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=3.1e-07 Score=88.56 Aligned_cols=84 Identities=27% Similarity=0.442 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.......+||||+.+.+|.+++...|+.||.|..+.|..|+.+|.+|||+||+|.+.+.++.|+. |+|..| .++.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i---~~~~i 172 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI---PGPAI 172 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc---ccccc
Confidence 34456899999999999999999999999999999999999999999999999999999999996 999988 66777
Q ss_pred EEeeccCC
Q 009354 165 KVRFADGE 172 (537)
Q Consensus 165 ~v~~a~~~ 172 (537)
++.+..-.
T Consensus 173 ~vt~~r~~ 180 (231)
T KOG4209|consen 173 EVTLKRTN 180 (231)
T ss_pred eeeeeeee
Confidence 77765443
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.39 E-value=3e-07 Score=91.61 Aligned_cols=164 Identities=16% Similarity=0.209 Sum_probs=107.6
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCC--
Q 009354 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHP-- 78 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~-- 78 (537)
|++-+.|.+...-..|...|.. +......+. ....+..+++|...+.+..++.......+.......-++..
T Consensus 94 g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~----~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~ 169 (285)
T KOG4210|consen 94 GELSENIEESEDDNFSSEAGLRVDARSSSLEDS----LSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRG 169 (285)
T ss_pred cccccchhhccccccchhhcCcccchhhhhccc----cccccceeeccccHHHHHHHHHhhhccccccccccCccccccc
Confidence 4555555566455555666765 333333332 22225567788877777666654443232222111111111
Q ss_pred ----CCCCCCCCCCCCEEE-EcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcC
Q 009354 79 ----APDHINDSGIPAKLY-VAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG 153 (537)
Q Consensus 79 ----~~~~~~~~~~~~~Lf-VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g 153 (537)
............++| |++|+.++++++|+..|..+|.|..+++..+..+|..+|||||.|.+..++..++.. ..
T Consensus 170 ~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~ 248 (285)
T KOG4210|consen 170 LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT 248 (285)
T ss_pred ccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc
Confidence 222223344556666 999999999999999999999999999999999999999999999999999999855 55
Q ss_pred ceeecCCceeEEEeeccCCCC
Q 009354 154 HYIFPGEQASIKVRFADGERE 174 (537)
Q Consensus 154 ~~~~~g~~~~l~v~~a~~~~~ 174 (537)
..+ .++.+.+.+......
T Consensus 249 ~~~---~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 249 RSI---GGRPLRLEEDEPRPK 266 (285)
T ss_pred Ccc---cCcccccccCCCCcc
Confidence 544 457777777665533
No 138
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.38 E-value=2.8e-07 Score=60.28 Aligned_cols=29 Identities=52% Similarity=1.091 Sum_probs=27.4
Q ss_pred CCCceeeCCCCCeeeeeCCccceeccCCh
Q 009354 434 CDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 434 ~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
..|.+..+.+|+.||||..|++|+|++|.
T Consensus 3 ~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 3 PGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 56999999999999999999999999995
No 139
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.38 E-value=7.7e-08 Score=96.28 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=120.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEHGN-VIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
..||+|||.+.++..||+.+|...-. ...-.+++ .||+||.+.+..-|.+|++.++|+.-+-| .++.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqG--kr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQG--KRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcC--ceeeccc
Confidence 46999999999999999999986511 11112232 37999999999999999999999876644 6666666
Q ss_pred ccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEec
Q 009354 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMR 248 (537)
Q Consensus 169 a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~ 248 (537)
+-.++.+ .+.|-|+|++....++-|..++..||.++.|..+..+. ..-..-|+|.+.+.+..||..|+|..+
T Consensus 73 sv~kkqr----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~-- 144 (584)
T KOG2193|consen 73 SVPKKQR----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQL-- 144 (584)
T ss_pred hhhHHHH----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHh--
Confidence 6554433 35699999999999999999999999999997754321 122334789999999999999999988
Q ss_pred CCCceEEEEEccC
Q 009354 249 GSDQPLVVRIADP 261 (537)
Q Consensus 249 g~g~~l~V~~a~~ 261 (537)
.+..++|.|-..
T Consensus 145 -en~~~k~~YiPd 156 (584)
T KOG2193|consen 145 -ENQHLKVGYIPD 156 (584)
T ss_pred -hhhhhhcccCch
Confidence 678899988643
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.34 E-value=1e-06 Score=84.79 Aligned_cols=81 Identities=23% Similarity=0.385 Sum_probs=74.4
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
...+|+|.||++.++++||+++|..||.++.+.|..++.|.+.|.|-|.|...++|.+|++.++|..+ +|+.+.+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l---dG~~mk~~~ 158 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL---DGRPMKIEI 158 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCccc---CCceeeeEE
Confidence 44689999999999999999999999999999999999999999999999999999999999999665 789999888
Q ss_pred ccCC
Q 009354 259 ADPK 262 (537)
Q Consensus 259 a~~~ 262 (537)
....
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 7654
No 141
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.34 E-value=4.1e-07 Score=58.95 Aligned_cols=29 Identities=45% Similarity=0.975 Sum_probs=27.3
Q ss_pred CCCceeeCCCCCeeeeeCCccceeccCCh
Q 009354 434 CDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 434 ~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
..|.++.+.+|+.||||..|++|+|++|.
T Consensus 2 ~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 46999999999999999999999999995
No 142
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.32 E-value=2.9e-05 Score=76.32 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHG--NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
.....++|||||-|.+|++||.+.+...| .+.++++..++.+|.+||||.|...+..+.++.++.|-.+.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 34568899999999999999999988776 678899999999999999999999999999999988877666
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.31 E-value=1.4e-06 Score=90.38 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=61.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
...+|||+|||.++++++|+++|..||.|+...|......+++.+||||+|.+.+++..||++- ...+ .+++|.|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~i--g~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLEI--GGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--cccc--CCeeEEEE
Confidence 3466999999999999999999999999998887665434555599999999999999999654 2222 35666665
Q ss_pred ec
Q 009354 168 FA 169 (537)
Q Consensus 168 ~a 169 (537)
--
T Consensus 363 ek 364 (419)
T KOG0116|consen 363 EK 364 (419)
T ss_pred ec
Confidence 53
No 144
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=98.27 E-value=2.3e-07 Score=93.31 Aligned_cols=38 Identities=45% Similarity=0.906 Sum_probs=32.6
Q ss_pred CCCCceeeCCCCCeeeeeCCccceeccCChhhHH-HHHH
Q 009354 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLL-FEQQ 470 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~-~~~~ 470 (537)
.+.|.|.+++|||.||||+.|++|+||||++|+. .|+.
T Consensus 14 ~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~ 52 (590)
T COG5104 14 RSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEED 52 (590)
T ss_pred HHHHHHhhCCCCceEEEecccccccccChHHHhcchHhh
Confidence 4679999999999999999999999999977654 4443
No 145
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.23 E-value=2.2e-06 Score=84.33 Aligned_cols=80 Identities=26% Similarity=0.260 Sum_probs=73.5
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCee--------EEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCC
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIE--------DIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGS 250 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~--------~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~ 250 (537)
....|||.|||.++|.+++.++|+++|.|. .|+|.++..|..+|-|++.|...++..-|+..|++..+ .
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~---r 209 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL---R 209 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc---c
Confidence 355699999999999999999999999876 37888998899999999999999999999999999998 7
Q ss_pred CceEEEEEccC
Q 009354 251 DQPLVVRIADP 261 (537)
Q Consensus 251 g~~l~V~~a~~ 261 (537)
|+.|+|..|+-
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 89999998864
No 146
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=4.2e-06 Score=86.63 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=98.0
Q ss_pred CCCCCCCCCCccccccCCCCCCc-cEEe--ecCCCCCCCCCCcCccccccchhhccc---ccccc--------cCCcccC
Q 009354 2 EGHVGEYITDPPEFNPNSFSGNY-CSWS--SDDHRHNFPDNYHSHHRRHYQYDQMSS---EPTDF--------FNGQPMP 67 (537)
Q Consensus 2 ~~~~~~~it~~~l~~~Fs~~G~i-~~v~--~~~~~~~~~~~~~~~~~~~~~~~e~A~---~a~~~--------lng~~l~ 67 (537)
-|+|++.|+|+.+...|..||.+ ..|. ........+++...-.++-|+.+.... .|... +....+.
T Consensus 264 vGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k 343 (520)
T KOG0129|consen 264 VGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIK 343 (520)
T ss_pred ecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecCccc
Confidence 38999999999999999999998 5554 223333334442112233343332211 11111 1111111
Q ss_pred CCcc-cccCCCCCCC----CCCCCCCCCEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeccCCCCCCccceEEEEEccH
Q 009354 68 FIGR-KRGFNHPAPD----HINDSGIPAKLYVAPVPRTATEEDIRPLFE-EHGNVIEVVLPKDKRTGQQQGYCFVKFTIF 141 (537)
Q Consensus 68 ~~~~-~~~~~~~~~~----~~~~~~~~~~LfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~ 141 (537)
.+.. .+-|...+.+ ....-++.+|||||+||.-++-++|-.+|+ -||.|.-+-|=.|++-+=.||-|=|.|++-
T Consensus 344 ~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnq 423 (520)
T KOG0129|consen 344 DKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQ 423 (520)
T ss_pred ccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeeccc
Confidence 1111 1223332222 222345779999999999999999999999 699999999999977888999999999999
Q ss_pred HHHHHHHHH
Q 009354 142 EEAGNAIRA 150 (537)
Q Consensus 142 e~A~~Ai~~ 150 (537)
.+-.+||.+
T Consensus 424 qsYi~AIsa 432 (520)
T KOG0129|consen 424 QAYIKAISA 432 (520)
T ss_pred HHHHHHHhh
Confidence 999999944
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.22 E-value=1.5e-06 Score=92.13 Aligned_cols=163 Identities=21% Similarity=0.100 Sum_probs=118.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
+.+.+-+.+.+++.++.|++++|-.. .|..+.|..+...+...|-++|+|....++.+|++. |...+ ..|.+.+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~---~~R~~q~~ 384 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDD---VNRPFQTG 384 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhh---hhcceeec
Confidence 34666778999999999999998743 255555666654445578999999999999999843 33322 23455554
Q ss_pred eccCCCC-------------------------------------CCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeE-
Q 009354 168 FADGERE-------------------------------------HPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED- 209 (537)
Q Consensus 168 ~a~~~~~-------------------------------------~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~- 209 (537)
-+..... .......+|||..||..+++.++.++|..--.|++
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 3321100 00123578999999999999999999998777776
Q ss_pred EEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 210 IFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 210 v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
|.|-+.++++.++.|||.|...+++.+|...-+..++ +.|.|+|.-
T Consensus 465 I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~---G~r~irv~s 510 (944)
T KOG4307|consen 465 IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYP---GHRIIRVDS 510 (944)
T ss_pred eEeccCCcccccchhhheeccccccchhhhccccccc---CceEEEeec
Confidence 7777778899999999999999988888764444443 578888864
No 148
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=2.9e-06 Score=92.67 Aligned_cols=155 Identities=13% Similarity=0.122 Sum_probs=125.2
Q ss_pred CCCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCC
Q 009354 2 EGHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPD 81 (537)
Q Consensus 2 ~~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~ 81 (537)
-|||+.-+++..+-..|..+|.+..|.++.-++. ... ...++-|.+.+|+-.|.-.+.|..|.....++++..+
T Consensus 377 ~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~--~es-a~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~--- 450 (975)
T KOG0112|consen 377 LGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK--TES-AYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP--- 450 (975)
T ss_pred hcCcccchhhhhhhhhhhhhccccccccccCCCC--ccc-chhhhhhhccccCcccchhhcCCccccCccccccccc---
Confidence 3899999999999999999999977766644321 111 2356778888999999999999999777778777544
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009354 82 HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 82 ~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
.....+.||+|+|..++....|...|..||.|..|.+-.- .-||||.|.+...|..|++.|.|..| .+-.
T Consensus 451 ---kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~-G~P~ 520 (975)
T KOG0112|consen 451 ---KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPL-GGPP 520 (975)
T ss_pred ---ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcC-CCCC
Confidence 2345689999999999999999999999999998776433 24999999999999999999999876 4445
Q ss_pred eeEEEeeccCC
Q 009354 162 ASIKVRFADGE 172 (537)
Q Consensus 162 ~~l~v~~a~~~ 172 (537)
+.++|.++...
T Consensus 521 ~r~rvdla~~~ 531 (975)
T KOG0112|consen 521 RRLRVDLASPP 531 (975)
T ss_pred cccccccccCC
Confidence 67889888644
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.08 E-value=2e-06 Score=79.56 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=70.8
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~ 258 (537)
..++|||+|+...++|+-|.++|-.-|.|.+|.|..+.+++.+ ||||.|.++.+..-|++.+||..+ .++.+.|.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l---~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDL---EEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchh---ccchhhccc
Confidence 4578999999999999999999999999999999998888777 999999999999999999999987 578888876
Q ss_pred cc
Q 009354 259 AD 260 (537)
Q Consensus 259 a~ 260 (537)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 54
No 150
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=3.1e-06 Score=88.33 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=64.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009354 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~ 255 (537)
.....+|+|-|||..+++++|+.+|+.||+|+.|+.-+. .+|..||+|.|..+|++|+++|++..+ .|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~---~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREI---AGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHh---hhhhhc
Confidence 445678999999999999999999999999999766554 688999999999999999999999998 677777
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.06 E-value=4.2e-06 Score=83.40 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=107.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCC---CCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRT---GQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
..|-|.||.+.+|.+.++.+|.-.|.|.+++|+..... ....-.|||.|.+...+..|- .|.++.+++. .|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdr---aliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDR---ALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeee---eEEE
Confidence 47999999999999999999999999999999874322 345568999999999999998 5655555322 2222
Q ss_pred e-eccCC-CCC---------------------C-------------------------------CCCCCCcccccCCcCC
Q 009354 167 R-FADGE-REH---------------------P-------------------------------VAPPDKLYVGCLSKQT 192 (537)
Q Consensus 167 ~-~a~~~-~~~---------------------~-------------------------------~~~~~~l~V~nl~~~~ 192 (537)
. +.+.- ..+ . .....+|+|++|...+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 2 22100 000 0 0013679999999999
Q ss_pred CHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCce
Q 009354 193 SKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTF 245 (537)
Q Consensus 193 te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 245 (537)
...++.+.|..+|+|.+..+-... ...+|-|+|....+...|+. ++|..
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr-~~gre 212 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALR-SHGRE 212 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHH-hcchh
Confidence 999999999999999887765532 44567788988887777776 34443
No 152
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.05 E-value=2e-05 Score=65.13 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=69.2
Q ss_pred CCcccccCCcCCCHHHHHHHHcC--CCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecC-CCceEEE
Q 009354 181 DKLYVGCLSKQTSKKEIEEVFSP--YGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRG-SDQPLVV 256 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~--~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g-~g~~l~V 256 (537)
++|-|+|||...|.++|.+++.. .|....+.+..| .++.+.|||||.|.+.+.|.+-.+.++|...-.. ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 57899999999999999998865 366777888888 6778999999999999999999999999876322 4678889
Q ss_pred EEccCC
Q 009354 257 RIADPK 262 (537)
Q Consensus 257 ~~a~~~ 262 (537)
.||.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 988753
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.03 E-value=1.3e-05 Score=77.46 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=74.8
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009354 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~ 255 (537)
......+||+|+.+.++.+++..+|+.+|.|..+.|..|. .+..+||+||+|.+.+.+.+|+. |+|..+ .++.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i---~~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI---PGPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc---ccccce
Confidence 4567889999999999999999999999999999999984 56799999999999999999999 999998 789999
Q ss_pred EEEccCC
Q 009354 256 VRIADPK 262 (537)
Q Consensus 256 V~~a~~~ 262 (537)
|.+...+
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9988765
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.99 E-value=9.4e-06 Score=86.50 Aligned_cols=81 Identities=22% Similarity=0.422 Sum_probs=71.9
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec----CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce
Q 009354 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE----LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~----~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~ 253 (537)
...++|||+||+..++++.|...|..||.|..++|+.-. ..+.+.++||-|-++.+|++|++.|+|..+ .+..
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---~~~e 248 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---MEYE 248 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---eeee
Confidence 346799999999999999999999999999999988652 355678999999999999999999999998 5788
Q ss_pred EEEEEccC
Q 009354 254 LVVRIADP 261 (537)
Q Consensus 254 l~V~~a~~ 261 (537)
+++.|++.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99988864
No 155
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.92 E-value=3.1e-06 Score=92.09 Aligned_cols=142 Identities=13% Similarity=0.155 Sum_probs=109.3
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009354 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~lng~~l~~~~~~~~~~~~~~~~ 82 (537)
.||...+.+++|...|+.+|.|-.+-.+-|. +.+.+.+-.++.|...+.+..|+....+..+.
T Consensus 673 snl~~~~~~~dl~~~~~~~~~~e~vqi~~h~--n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------------- 735 (881)
T KOG0128|consen 673 SNLSPKMSEEDLSERFSPSGTIEVVQIVIHK--NEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------------- 735 (881)
T ss_pred hhcchhhcCchhhhhcCccchhhhHHHHHHh--hccccccceeeEeecCCchhhhhhhhhhhhhh---------------
Confidence 5788889999999999999999554444232 23333345677787777777777655554441
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009354 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 83 ~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
...|||.|+|+..|+++|+.+|..+|.+.+.+++..+ .|+.+|.|||.|.+..+|.+++.......+ +.+
T Consensus 736 ------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~---rE~ 805 (881)
T KOG0128|consen 736 ------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGK---REN 805 (881)
T ss_pred ------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhh---hhc
Confidence 3579999999999999999999999999999988886 899999999999999999999877766544 344
Q ss_pred eEEEeeccC
Q 009354 163 SIKVRFADG 171 (537)
Q Consensus 163 ~l~v~~a~~ 171 (537)
.+.|..++.
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 555555443
No 156
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.80 E-value=5.2e-05 Score=72.08 Aligned_cols=108 Identities=27% Similarity=0.351 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCceeecCCceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcc
Q 009354 142 EEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSR 221 (537)
Q Consensus 142 e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~ 221 (537)
.-|+.|..+|.+... +++.|+|.|+-. ..|||.||...++.+.|...|+.||.|+...++-|..++..
T Consensus 5 t~ae~ak~eLd~~~~---~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t 72 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP---KGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPT 72 (275)
T ss_pred cHHHHHHHhcCCCCC---CCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccc
Confidence 356777778999877 789999999854 46999999999999999999999999999999999888889
Q ss_pred eEEEEEEcCHHHHHHHHHHcC-CceEecCCCceEEEEEccC
Q 009354 222 GCAFVQFSHREMALAAISGLN-GTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 222 g~afV~F~~~~~A~~Ai~~l~-g~~~~~g~g~~l~V~~a~~ 261 (537)
+-++|.|...-.|.+|+..+. +...+..++++..|.....
T Consensus 73 ~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq 113 (275)
T KOG0115|consen 73 REGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQ 113 (275)
T ss_pred ccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhc
Confidence 999999999999999998774 2222333556666655443
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.75 E-value=3.5e-05 Score=76.73 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceee
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVI--------EVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIF 157 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~ 157 (537)
.....+|||-+||..+++++|.++|.++|.|. .|+|.+|++|++.||-|.|.|.+...|+.||.-++++.+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf- 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF- 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc-
Confidence 44568999999999999999999999999874 578889999999999999999999999999999999988
Q ss_pred cCCceeEEEeeccCCC
Q 009354 158 PGEQASIKVRFADGER 173 (537)
Q Consensus 158 ~g~~~~l~v~~a~~~~ 173 (537)
.+..|+|..+..+.
T Consensus 142 --~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 --CGNTIKVSLAERRT 155 (351)
T ss_pred --cCCCchhhhhhhcc
Confidence 55788888876543
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.73 E-value=0.00014 Score=57.58 Aligned_cols=71 Identities=28% Similarity=0.478 Sum_probs=46.6
Q ss_pred CEEEEcCCCCCCCHH----HHHHHhhccC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 90 AKLYVAPVPRTATEE----DIRPLFEEHG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 90 ~~LfVgnLp~~~te~----~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
..|||.|||.+.+-. -|+.++..+| .|.+|. .|-|+|.|.+.+.|++|.+.|+|...+ +..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVf---G~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVF---GNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SS---SS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccc---cceE
Confidence 469999999998865 4567777885 666652 258999999999999999999999874 4678
Q ss_pred EEeeccCCC
Q 009354 165 KVRFADGER 173 (537)
Q Consensus 165 ~v~~a~~~~ 173 (537)
.|++....+
T Consensus 70 ~v~~~~~~r 78 (90)
T PF11608_consen 70 SVSFSPKNR 78 (90)
T ss_dssp EEESS--S-
T ss_pred EEEEcCCcc
Confidence 888875443
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00012 Score=76.47 Aligned_cols=80 Identities=26% Similarity=0.516 Sum_probs=63.9
Q ss_pred CCCCEEEEcCCCCC--CCHH----HHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCC
Q 009354 87 GIPAKLYVAPVPRT--ATEE----DIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160 (537)
Q Consensus 87 ~~~~~LfVgnLp~~--~te~----~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~ 160 (537)
.-...|+|.|+|-- ..-+ -|..+|+++|+|....+..+.. |..+||.|++|.+..+|+.|++.|||+.|. +
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld--k 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLD--K 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceec--c
Confidence 44578999999832 2223 3557999999999999988875 449999999999999999999999999885 4
Q ss_pred ceeEEEeec
Q 009354 161 QASIKVRFA 169 (537)
Q Consensus 161 ~~~l~v~~a 169 (537)
++.+.|+.-
T Consensus 133 nHtf~v~~f 141 (698)
T KOG2314|consen 133 NHTFFVRLF 141 (698)
T ss_pred cceEEeehh
Confidence 566666543
No 160
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=97.71 E-value=9.2e-06 Score=82.06 Aligned_cols=36 Identities=42% Similarity=0.655 Sum_probs=33.3
Q ss_pred CCCCCCceeeCCCCCeeeeeCCccceeccCChhhHH
Q 009354 431 SPECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLL 466 (537)
Q Consensus 431 ~~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~ 466 (537)
.....|.|.++.||++||||..|+||.|..|.+.+-
T Consensus 53 l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~Kk 88 (590)
T COG5104 53 LDVDPWKECRTADGKVYYYNSITRESRWKIPPERKK 88 (590)
T ss_pred hchhhHHHHhhcCCceEEecCccccccccCChhhhc
Confidence 556789999999999999999999999999999776
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.70 E-value=5.5e-05 Score=76.61 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=72.9
Q ss_pred ccCCCcccccCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccC---CCCC--C--------cc
Q 009354 65 PMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKD---KRTG--Q--------QQ 131 (537)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg--~--------~k 131 (537)
.+..++.|+++-.+-++.....-.+++|.+-|||.+-.-+.|.+||..+|.|..|+|..- +.++ . .+
T Consensus 207 ~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk 286 (484)
T KOG1855|consen 207 EVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTK 286 (484)
T ss_pred EEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhh
Confidence 444567777777777777666678999999999999998999999999999999999875 3222 1 25
Q ss_pred ceEEEEEccHHHHHHHHHHhcC
Q 009354 132 GYCFVKFTIFEEAGNAIRALNG 153 (537)
Q Consensus 132 G~aFV~F~~~e~A~~Ai~~l~g 153 (537)
-+|||+|...+.|.+|.+.|+.
T Consensus 287 ~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 287 ECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred hhhhhhhhhhHHHHHHHHhhch
Confidence 6899999999999999987754
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.65 E-value=0.0002 Score=70.33 Aligned_cols=110 Identities=17% Similarity=0.392 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCCHHH----H--HHHhhccCCeEEEEeccCCCC-CCccce--EEEEEccHHHHHHHHHHhcCceeecC
Q 009354 89 PAKLYVAPVPRTATEED----I--RPLFEEHGNVIEVVLPKDKRT-GQQQGY--CFVKFTIFEEAGNAIRALNGHYIFPG 159 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~----L--~~~F~~~G~I~~v~i~~d~~t-g~~kG~--aFV~F~~~e~A~~Ai~~l~g~~~~~g 159 (537)
..-+||-+|++.+..|+ | .++|.+||.|..|.|-+.... ..-.+. .||.|.+.|||.+||.+.+|..+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--- 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--- 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc---
Confidence 46689999998876665 3 379999999999887654311 122232 39999999999999999999987
Q ss_pred CceeEEEeeccCC------CCCCCCCCCCcccccCC---cCCCHHHHHHHH
Q 009354 160 EQASIKVRFADGE------REHPVAPPDKLYVGCLS---KQTSKKEIEEVF 201 (537)
Q Consensus 160 ~~~~l~v~~a~~~------~~~~~~~~~~l~V~nl~---~~~te~~L~~~F 201 (537)
.+|.|+..+...+ +...+....++|+..-. +..+.+||.+.-
T Consensus 191 DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 191 DGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred cCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 6688888887544 22334455566654332 346777776544
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.59 E-value=0.00014 Score=72.51 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=73.6
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeE--------EEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecC
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIED--------IFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRG 249 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~--------v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g 249 (537)
...+|||-+|++.+++++|.++|..+|.|.. |.|.+| .+++.++-|.|.|.|...|+.||..++++.+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf--- 141 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF--- 141 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc---
Confidence 3468999999999999999999999998863 556666 6889999999999999999999999999998
Q ss_pred CCceEEEEEccCCCC
Q 009354 250 SDQPLVVRIADPKKP 264 (537)
Q Consensus 250 ~g~~l~V~~a~~~~~ 264 (537)
++.+|+|.++..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 789999999987653
No 164
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.57 E-value=0.00018 Score=60.81 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=39.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCc
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~ 154 (537)
+.|+|.++...++.++|+++|+.||.|.-|.+.+.- .-|||.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 568999999999999999999999999999887754 27999999999999999887543
No 165
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.45 E-value=0.00027 Score=55.91 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=46.1
Q ss_pred CcccccCCcCCCHHHHH----HHHcCCCC-eeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 182 KLYVGCLSKQTSKKEIE----EVFSPYGH-IEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~----~~F~~~G~-I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
.|||.|||.+.+...|+ .++..+|. |..| ..+.|+|.|.+.+.|.+|.+.|+|..+ -|..|.|
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdV---fG~kI~v 71 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDV---FGNKISV 71 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--S---SSS--EE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhccccc---ccceEEE
Confidence 58999999988876655 45556654 6555 357899999999999999999999988 4899999
Q ss_pred EEccCC
Q 009354 257 RIADPK 262 (537)
Q Consensus 257 ~~a~~~ 262 (537)
+|....
T Consensus 72 ~~~~~~ 77 (90)
T PF11608_consen 72 SFSPKN 77 (90)
T ss_dssp ESS--S
T ss_pred EEcCCc
Confidence 998543
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.39 E-value=0.00039 Score=50.98 Aligned_cols=52 Identities=19% Similarity=0.481 Sum_probs=42.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHH
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 148 (537)
+.|-|.+.+.+..+. ++..|..||+|.++.+.... -+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 567788888777754 55689999999999887333 38999999999999985
No 167
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.34 E-value=0.00043 Score=74.02 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=62.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
+.|-+.|+|++++-+||.++|..|-.+-.-.+++..+.|+..|-|.|-|++.++|.+|...|+++.| ..+.+++.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i---~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI---RNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc---cceeEEEE
Confidence 4788999999999999999999997554333333335899999999999999999999999999998 56777665
No 168
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.30 E-value=0.00032 Score=59.35 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=39.1
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCc
Q 009354 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGT 244 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 244 (537)
+.|+|.++...++.++|++.|+.||.|.+|.+.+ ....|+|.|.+.++|.+|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-----G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-----GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-----T-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-----CCCEEEEEECCcchHHHHHHHHHhc
Confidence 4678889999999999999999999999998877 3457999999999999999877544
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.24 E-value=0.00042 Score=68.15 Aligned_cols=79 Identities=20% Similarity=0.432 Sum_probs=63.2
Q ss_pred CCcccccCCcCCCHHHH------HHHHcCCCCeeEEEEEeec-C-CCcce-E-EEEEEcCHHHHHHHHHHcCCceEecCC
Q 009354 181 DKLYVGCLSKQTSKKEI------EEVFSPYGHIEDIFIVRDE-L-KQSRG-C-AFVQFSHREMALAAISGLNGTFTMRGS 250 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L------~~~F~~~G~I~~v~i~~d~-~-g~~~g-~-afV~F~~~~~A~~Ai~~l~g~~~~~g~ 250 (537)
+-+||-+|+..+-.+++ .++|.+||.|.+|.|-+.. . ....+ + .||+|.+.++|.+||...+|..+ +
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~---D 191 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL---D 191 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc---c
Confidence 46899999988766662 4799999999999988762 1 11122 2 38999999999999999999998 8
Q ss_pred CceEEEEEccCC
Q 009354 251 DQPLVVRIADPK 262 (537)
Q Consensus 251 g~~l~V~~a~~~ 262 (537)
||.|+..|...|
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999997654
No 170
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=97.16 E-value=0.00026 Score=73.38 Aligned_cols=35 Identities=46% Similarity=0.846 Sum_probs=32.4
Q ss_pred CCCceeeCCCCCeeeeeCCccceeccCChhhHHHH
Q 009354 434 CDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFE 468 (537)
Q Consensus 434 ~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~~~ 468 (537)
+.|+|+.+|+|..||||+.|.+++|++|..+...+
T Consensus 12 s~wtef~ap~G~pyy~ns~t~~st~ekP~~l~~~~ 46 (617)
T KOG0155|consen 12 SGWTEFKAPDGIPYYWNSETLESTWEKPSFLEKNE 46 (617)
T ss_pred CCCccCCCCCCcceecccccccchhhCchhhhhcc
Confidence 56999999999999999999999999999987655
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.15 E-value=0.00059 Score=69.34 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=57.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee---c---CCCc--------ceEEEEEEcCHHHHHHHHHHcC
Q 009354 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD---E---LKQS--------RGCAFVQFSHREMALAAISGLN 242 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d---~---~g~~--------~g~afV~F~~~~~A~~Ai~~l~ 242 (537)
..+.++|.+.|||.+-.-+.|.++|+.+|.|..|+|..- + .+.. +-+|||+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 457889999999999989999999999999999999764 1 1222 4579999999999999999886
Q ss_pred Cce
Q 009354 243 GTF 245 (537)
Q Consensus 243 g~~ 245 (537)
..-
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 543
No 172
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00037 Score=60.55 Aligned_cols=31 Identities=35% Similarity=0.848 Sum_probs=25.6
Q ss_pred CCCceeeCC-CCCeeeeeCCccceeccCChhh
Q 009354 434 CDWSEHTCP-DGNKYYYNCETCESRWDKPEEY 464 (537)
Q Consensus 434 ~~w~~~~~~-~g~~y~~~~~~~~~~w~~p~~~ 464 (537)
..|..-.+- .||.||||..|++|+||.|++-
T Consensus 9 ~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 9 PGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred chhheeccccCCCcceeccccchhhccCCCcc
Confidence 458766554 5999999999999999999873
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0021 Score=67.50 Aligned_cols=76 Identities=26% Similarity=0.366 Sum_probs=60.7
Q ss_pred CCcccccCCcC------CCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceE
Q 009354 181 DKLYVGCLSKQ------TSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254 (537)
Q Consensus 181 ~~l~V~nl~~~------~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l 254 (537)
..|+|.|+|-- .-..-|.++|+++|+|..+.+..++.|..+||.|++|++..+|..|++.|||+.+. .+.++
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld--knHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD--KNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec--ccceE
Confidence 34555565531 22345678999999999999999988889999999999999999999999999984 45677
Q ss_pred EEEE
Q 009354 255 VVRI 258 (537)
Q Consensus 255 ~V~~ 258 (537)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 7764
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.70 E-value=0.0041 Score=60.32 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=56.3
Q ss_pred CHHHHHHHHcCCCCeeEEEEEeecCCC--cceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCC
Q 009354 193 SKKEIEEVFSPYGHIEDIFIVRDELKQ--SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 193 te~~L~~~F~~~G~I~~v~i~~d~~g~--~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~~ 263 (537)
-++++++.+++||.|..|.|+.++.-. ..--.||+|+..++|.+|+-.|||++| +||.++..|.+..+
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF---GGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF---GGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee---cceeeeheeccHHh
Confidence 356788999999999999998874211 123479999999999999999999999 89999999976544
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.69 E-value=0.0014 Score=62.59 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCC--------CCccce----EEEEEccHHHHHHHHHHhcCce
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRT--------GQQQGY----CFVKFTIFEEAGNAIRALNGHY 155 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t--------g~~kG~----aFV~F~~~e~A~~Ai~~l~g~~ 155 (537)
....||+++||+.+.-..|+++|+.||.|-.|.|-....+ |.++++ |+|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999998776554 444433 7799999999999999999998
Q ss_pred ee
Q 009354 156 IF 157 (537)
Q Consensus 156 ~~ 157 (537)
|-
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 73
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.58 E-value=0.0009 Score=63.94 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=54.5
Q ss_pred HHHHHHHc-CCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccC
Q 009354 195 KEIEEVFS-PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 195 ~~L~~~F~-~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~ 261 (537)
++|+..|+ +||+|+.+.|-.+-.-.-+|-++|.|...++|++|++.|||.++ +|++|...+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~---~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWY---NGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccc---cCCcceeeecCc
Confidence 56666666 89999999877764445688999999999999999999999998 899999998654
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.57 E-value=0.0018 Score=61.82 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=71.5
Q ss_pred ccccccccCCcccCCCcccccCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccce
Q 009354 54 SSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGY 133 (537)
Q Consensus 54 A~~a~~~lng~~l~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~ 133 (537)
|..|...|++....+...++.+.. ...|||.||..-++.|.|.+.|+.||+|....++-|- .++..|-
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~-----------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~e 74 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAM-----------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTRE 74 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeec-----------cceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-ccccccc
Confidence 455666788877766656665521 2579999999999999999999999999887777773 6888999
Q ss_pred EEEEEccHHHHHHHHHHhc
Q 009354 134 CFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 134 aFV~F~~~e~A~~Ai~~l~ 152 (537)
++|.|...-.|.+|+..+.
T Consensus 75 g~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCR 93 (275)
T ss_pred chhhhhcchhHHHHHHHhc
Confidence 9999999999999998874
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.52 E-value=0.0038 Score=65.99 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=67.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFE-EHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
...+..|+|.||-.-+|.-.|+.++. ..|.|++.+|-+- |..|||.|.+.++|.+.+++|||..+..+..+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 45678999999999999999999999 5667777644222 3589999999999999999999999888888888
Q ss_pred EEeeccC
Q 009354 165 KVRFADG 171 (537)
Q Consensus 165 ~v~~a~~ 171 (537)
.+.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8887653
No 179
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.51 E-value=0.0032 Score=46.16 Aligned_cols=51 Identities=24% Similarity=0.445 Sum_probs=39.9
Q ss_pred CcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHH
Q 009354 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAI 238 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai 238 (537)
.|-|.+.+.+.. ++|..+|..||+|..+.+.. ...+.+|+|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 355666665544 45666899999999988873 4678999999999999985
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.09 E-value=0.027 Score=46.97 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=49.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEec-cCCC------CCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009354 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLP-KDKR------TGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~-~d~~------tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
.+-|.|=+.|...+ ..|.+.|++||.|++..-. ++.. .-....+-.|.|.+..+|.+|| ..||..+. | .
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~-g-~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFS-G-S 81 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEET-T-C
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEc-C-c
Confidence 45688888998855 5677889999999887511 1100 0123358999999999999999 78888662 2 3
Q ss_pred eeEEEeec
Q 009354 162 ASIKVRFA 169 (537)
Q Consensus 162 ~~l~v~~a 169 (537)
..+-|.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 45556665
No 181
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.91 E-value=0.0035 Score=59.83 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=57.9
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-C--------CCcceE----EEEEEcCHHHHHHHHHHcCCce
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-L--------KQSRGC----AFVQFSHREMALAAISGLNGTF 245 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~--------g~~~g~----afV~F~~~~~A~~Ai~~l~g~~ 245 (537)
....||+++||+..+-..|+++|+.||.|-.|.+-... . |...++ |.|+|.+...|.++.+.|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45689999999999999999999999999999987762 2 222222 6799999999999999999999
Q ss_pred E
Q 009354 246 T 246 (537)
Q Consensus 246 ~ 246 (537)
+
T Consensus 153 I 153 (278)
T KOG3152|consen 153 I 153 (278)
T ss_pred c
Confidence 8
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.77 E-value=0.0056 Score=64.76 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=67.6
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcC-CCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 178 APPDKLYVGCLSKQTSKKEIEEVFSP-YGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~-~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
...+.|||.||-.-.|.-.|+.++.+ .|.|+.. +|- +-+..|||.|.+.++|...+.+|||...-.++.+.|.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 45788999999999999999999986 4556655 332 25678999999999999999999999988888999999
Q ss_pred EEccCC
Q 009354 257 RIADPK 262 (537)
Q Consensus 257 ~~a~~~ 262 (537)
.|+...
T Consensus 517 df~~~d 522 (718)
T KOG2416|consen 517 DFVRAD 522 (718)
T ss_pred eecchh
Confidence 998643
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.64 E-value=0.049 Score=41.05 Aligned_cols=54 Identities=26% Similarity=0.324 Sum_probs=45.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc---CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHh
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEH---GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 151 (537)
..|+|.++. +++.+||+.+|..| .....|..+.|. -|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 579999985 58889999999998 235678888886 6999999999999999764
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.64 E-value=0.006 Score=58.46 Aligned_cols=62 Identities=24% Similarity=0.370 Sum_probs=48.4
Q ss_pred HHHHHHhh-ccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009354 104 EDIRPLFE-EHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 104 ~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
+||+..|+ +||+|++++|..+. --.-+|=+||.|...++|++|++.||+..+ .+++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~---~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY---NGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc---cCCcceeeec
Confidence 45555556 89999998776553 334568899999999999999999999987 5677766654
No 185
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=95.60 E-value=0.013 Score=61.09 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=32.8
Q ss_pred CCCCceeeCCCCCeeeeeCCccceeccCChhhHHHH
Q 009354 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFE 468 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~~~ 468 (537)
..+|.-.-+-|||+||||..|+.|.||+|.++++..
T Consensus 113 gtdWcVVwTgD~RvFFyNpktk~S~We~P~dlk~r~ 148 (617)
T KOG0155|consen 113 GTDWCVVWTGDNRVFFYNPKTKLSVWERPLDLKGRL 148 (617)
T ss_pred CCCeEEEEeCCCceEEeCCccccccccCchhhcccc
Confidence 445999999999999999999999999999998873
No 186
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.43 E-value=0.038 Score=53.84 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=51.1
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCCCccc-eEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeecc
Q 009354 103 EEDIRPLFEEHGNVIEVVLPKDKRTGQQQG-YCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFAD 170 (537)
Q Consensus 103 e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG-~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 170 (537)
++++++-+++||.|..|.|..++..-...- --||+|+..++|.+|+-.|||.+| .++.++..|-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF---GGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF---GGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee---cceeeeheecc
Confidence 356788999999999998887754333332 379999999999999999999987 56777766654
No 187
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.41 E-value=0.012 Score=59.88 Aligned_cols=78 Identities=33% Similarity=0.486 Sum_probs=62.5
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCC-eeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 181 DKLYVGCLSKQTSKKEIEEVFSPYGH-IEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~-I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
+.+|++||.+..+..||..+|...-. ...-.++ ..||+||.+.+...|.+|++.++|+.-+ .|+.+.|.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~el--qGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVEL--QGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhh--cCceeeccch
Confidence 47999999999999999999976411 1112222 3589999999999999999999999776 6799999998
Q ss_pred cCCCCCC
Q 009354 260 DPKKPRT 266 (537)
Q Consensus 260 ~~~~~~~ 266 (537)
-+++.+.
T Consensus 74 v~kkqrs 80 (584)
T KOG2193|consen 74 VPKKQRS 80 (584)
T ss_pred hhHHHHh
Confidence 8876543
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.29 E-value=0.067 Score=47.46 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=43.7
Q ss_pred HHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccC
Q 009354 105 DIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADG 171 (537)
Q Consensus 105 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 171 (537)
+|.+.|..||+|.-||+..+ --+|+|.+.++|.+|+ .++|..+ .++.|+|+.-..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v---~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQV---NGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEE---TTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEE---CCEEEEEEeCCc
Confidence 67788999999988888776 5899999999999999 8999988 567777776543
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.29 E-value=0.26 Score=41.93 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=49.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceee
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEH-GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIF 157 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~ 157 (537)
..+.+...|.-++-++|..+.+.+ ..|..++|++|. ..++-.+.++|.+.++|+...+.+||+.+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444455556666777666665 467888999874 346777999999999999999999999873
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.27 E-value=0.065 Score=42.65 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=41.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcC
Q 009354 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG 153 (537)
Q Consensus 92 LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g 153 (537)
||--..|......||.++|+.||.|. |..+.|. -|||...+.+.|..++..+.-
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 44444999999999999999999875 5666664 799999999999999987753
No 191
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.24 E-value=0.016 Score=57.83 Aligned_cols=80 Identities=18% Similarity=0.350 Sum_probs=58.3
Q ss_pred CEEEEcCCCCCCCHHH-HH--HHhhccCCeEEEEeccCCC--CCCc-cceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009354 90 AKLYVAPVPRTATEED-IR--PLFEEHGNVIEVVLPKDKR--TGQQ-QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~-L~--~~F~~~G~I~~v~i~~d~~--tg~~-kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
.-+||-+|+..+..++ |. +.|.+||.|..|.+.++.. .+.. ..-+||+|...++|..||...+|..+ .++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~---dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD---DGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh---hhhh
Confidence 5678889997765554 43 5899999999999888762 1111 11289999999999999999999865 4455
Q ss_pred EEEeeccCC
Q 009354 164 IKVRFADGE 172 (537)
Q Consensus 164 l~v~~a~~~ 172 (537)
++..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 666665443
No 192
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.17 E-value=0.061 Score=44.91 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=49.0
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEE-EEee-------cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCC-
Q 009354 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF-IVRD-------ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSD- 251 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~-i~~d-------~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g- 251 (537)
+-|.|-+.|.. ....|.+.|++||.|.+.. +.++ +.........|+|.+..+|.+|+. -||..+ +|
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~---~g~ 81 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF---SGS 81 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE---TTC
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE---cCc
Confidence 34667777777 5677888999999987764 1111 111245688999999999999997 788876 44
Q ss_pred ceEEEEEcc
Q 009354 252 QPLVVRIAD 260 (537)
Q Consensus 252 ~~l~V~~a~ 260 (537)
-.+-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 456677764
No 193
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=95.12 E-value=0.009 Score=58.46 Aligned_cols=37 Identities=30% Similarity=0.479 Sum_probs=31.9
Q ss_pred CCCCceeeCCCCCeeeeeCCccceeccCChhhHHHHH
Q 009354 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFEQ 469 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~~~~ 469 (537)
...|+++++++|.+||||..|++|.|..|........
T Consensus 150 ~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~ts~~ 186 (336)
T KOG0150|consen 150 TKEWVEGKNESGPTYYSNKRTNESVWKPPRISFTSRL 186 (336)
T ss_pred hhhcccccCCCCCCcceecCCCccccCCCCccccccc
Confidence 4569999999999999999999999999987554433
No 194
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.99 E-value=0.078 Score=47.05 Aligned_cols=57 Identities=30% Similarity=0.520 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 195 KEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 195 ~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
.+|.+.|..||++.-++++. +.-+|+|.+-.+|.+|+. ++|..+ +|+.|+|+...+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals-~dg~~v---~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALS-LDGIQV---NGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHH-GCCSEE---TTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHc-cCCcEE---CCEEEEEEeCCcc
Confidence 36778889999988777765 356899999999999997 999998 8999999987653
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.97 E-value=0.059 Score=50.08 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=51.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEeccC-CCCCC-ccceEEEEEccHHHHHHHHHHhcCceeecCC
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEE-HGNV---IEVVLPKD-KRTGQ-QQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~-~G~I---~~v~i~~d-~~tg~-~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~ 160 (537)
....+|.|++||+++||+++.+.+.. ++.. ..+.-... ...+. .-.-|||.|.+.+++...++.++|..+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34579999999999999999987776 6654 23331111 11222 2245999999999999999999998887655
Q ss_pred ce--eEEEeec
Q 009354 161 QA--SIKVRFA 169 (537)
Q Consensus 161 ~~--~l~v~~a 169 (537)
+. ...|.+|
T Consensus 85 g~~~~~~VE~A 95 (176)
T PF03467_consen 85 GNEYPAVVEFA 95 (176)
T ss_dssp S-EEEEEEEE-
T ss_pred CCCcceeEEEc
Confidence 43 3445554
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.63 E-value=0.077 Score=46.47 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=56.6
Q ss_pred CCCCCCcccccCCcC----CCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc
Q 009354 177 VAPPDKLYVGCLSKQ----TSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~----~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~ 252 (537)
..+-.+|.|+=|..+ -+-..|...++.||.|.+|.+. .+..|.|.|.|..+|-+|+.++.... -|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s~~----pgt 152 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQSRA----PGT 152 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcCCC----CCc
Confidence 445566777554443 3344556677889999999887 46789999999999999999999855 478
Q ss_pred eEEEEEcc
Q 009354 253 PLVVRIAD 260 (537)
Q Consensus 253 ~l~V~~a~ 260 (537)
.+.++|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 88888864
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.48 E-value=0.2 Score=51.90 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=59.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceee
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEH-GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIF 157 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~ 157 (537)
..+..|+|-.+|..++-.||..|...| -.|.+|+|+||.. -++=...|+|.+.++|....+.+||+.+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 337899999999999999999998876 4689999999642 34445899999999999999999999874
No 198
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.23 E-value=0.12 Score=38.98 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=44.8
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCC---CCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHc
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPY---GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~---G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l 241 (537)
...|+|++++ +.+-++|+.+|..| .....|..+.| ..|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC------CcEEEEECCHHHHHHHHHcC
Confidence 3578999985 58889999999998 23568888876 35789999999999999865
No 199
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.08 E-value=0.042 Score=55.57 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=59.9
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecC----CCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDEL----KQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~----g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
..|.|.||...++.+.+..+|.-.|+|..+.|+.... ......|||.|.|...+..|-- |.+.+++ ++.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfv---draliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFV---DRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceee---eeeEEE
Confidence 3789999999999999999999999999999988522 3346789999999998888865 5555552 566666
Q ss_pred EEc
Q 009354 257 RIA 259 (537)
Q Consensus 257 ~~a 259 (537)
...
T Consensus 84 ~p~ 86 (479)
T KOG4676|consen 84 RPY 86 (479)
T ss_pred Eec
Confidence 544
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.87 E-value=0.59 Score=39.76 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=55.9
Q ss_pred CcccccCCcCCCHHHHHHHHcCCC-CeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 182 KLYVGCLSKQTSKKEIEEVFSPYG-HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~~~F~~~G-~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
.+.+...+..++.++|..+.+.+- .|+.++|++|... ++-.++++|.+.++|..-...+||+.+-.......+|-|-
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 344455566677777876666654 4778899987443 6778999999999999999999999884444444555443
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.73 E-value=0.028 Score=56.15 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=61.8
Q ss_pred CCcccccCCcCCCHHHHH---HHHcCCCCeeEEEEEeecC--CC--cceEEEEEEcCHHHHHHHHHHcCCceEecCCCce
Q 009354 181 DKLYVGCLSKQTSKKEIE---EVFSPYGHIEDIFIVRDEL--KQ--SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~---~~F~~~G~I~~v~i~~d~~--g~--~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~ 253 (537)
.-+||-+|+.....+++. +.|..||.|.+|.+.++.. .. ...-++|+|...++|..||...+|... +|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~---dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD---DGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh---hhhh
Confidence 457888888776555543 5788999999999988752 11 122379999999999999999999887 8899
Q ss_pred EEEEEccCC
Q 009354 254 LVVRIADPK 262 (537)
Q Consensus 254 l~V~~a~~~ 262 (537)
|+..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 888887765
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.55 E-value=0.52 Score=48.93 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCC-CeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYG-HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G-~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~ 257 (537)
.+..|+|-.+|..++-.||..|+..+- .|..|+|++|... .+-.++|+|.+.++|..-.+.+||+.|-..+....+|-
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll 151 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLL 151 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEE
Confidence 377899999999999999999998765 4889999996433 56678999999999999999999998854444445554
Q ss_pred Ecc
Q 009354 258 IAD 260 (537)
Q Consensus 258 ~a~ 260 (537)
|..
T Consensus 152 ~V~ 154 (493)
T KOG0804|consen 152 YVD 154 (493)
T ss_pred EEE
Confidence 443
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.43 E-value=1.9 Score=45.95 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=48.7
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcC--CCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcC
Q 009354 177 VAPPDKLYVGCLSKQTSKKEIEEVFSP--YGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLN 242 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~--~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~ 242 (537)
....|.|.|+.|+..+-.|+|+.+|+. +-++.+|.+--+ .-.||+|++..+|..|.+.|.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DNWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------CceEEEeecchhHHHHHHHHH
Confidence 345578889999999999999999965 667778877653 247999999999999977664
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.26 E-value=0.33 Score=45.31 Aligned_cols=61 Identities=30% Similarity=0.269 Sum_probs=45.8
Q ss_pred CHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcC--CceEecCCCceEEEEEccC
Q 009354 193 SKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLN--GTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 193 te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~--g~~~~~g~g~~l~V~~a~~ 261 (537)
..+.|+++|..|+.+....+++ +-+-..|.|.+.++|.+|...|+ +..+ .|..++|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~---~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSF---NGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEE---TTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhccccccc---CCCceEEEEccc
Confidence 4578999999999998888877 44568999999999999999999 8888 789999999854
No 205
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.20 E-value=0.69 Score=51.14 Aligned_cols=16 Identities=6% Similarity=0.227 Sum_probs=7.4
Q ss_pred ccceeccCChhhHHHH
Q 009354 453 TCESRWDKPEEYLLFE 468 (537)
Q Consensus 453 ~~~~~w~~p~~~~~~~ 468 (537)
++|-..|-.+-|..+.
T Consensus 648 v~Edk~en~dlfakL~ 663 (1102)
T KOG1924|consen 648 VNEDKLENDDLFAKLA 663 (1102)
T ss_pred cchhhccchHHHHHHH
Confidence 3444555554444443
No 206
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.56 E-value=0.5 Score=37.72 Aligned_cols=55 Identities=25% Similarity=0.460 Sum_probs=41.3
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCC
Q 009354 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g 243 (537)
...||. .|.++-..||.++|+.||.| .|..+.| ..|||...+++.|..|+..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 345554 89999999999999999986 4555543 5799999999999999988764
No 207
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.53 E-value=4.9 Score=39.77 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=93.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCC-------CCCCccceEEEEEccHHHHHHHHH----HhcC--
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDK-------RTGQQQGYCFVKFTIFEEAGNAIR----ALNG-- 153 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-------~tg~~kG~aFV~F~~~e~A~~Ai~----~l~g-- 153 (537)
-..|.|.+.||..+++-..+...|.+||+|++|.++.+. +..+......+-|-+.+.+..... .|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999875 112233467888888887655431 1110
Q ss_pred ceeecCCceeEEEeeccCCCCC--------C----------------CCCCCCcccccCCcCCCHHHHH-H---HHcCCC
Q 009354 154 HYIFPGEQASIKVRFADGEREH--------P----------------VAPPDKLYVGCLSKQTSKKEIE-E---VFSPYG 205 (537)
Q Consensus 154 ~~~~~g~~~~l~v~~a~~~~~~--------~----------------~~~~~~l~V~nl~~~~te~~L~-~---~F~~~G 205 (537)
+.+ +...|.+.+..-+... . ....+.|.|- +...+.++++. + ++..-+
T Consensus 93 ~~L---~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 93 TKL---KSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred Hhc---CCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCC
Confidence 112 2334444444311100 0 1123344442 22334333332 2 222223
Q ss_pred ----CeeEEEEEeec---CCCcceEEEEEEcCHHHHHHHHHHcC
Q 009354 206 ----HIEDIFIVRDE---LKQSRGCAFVQFSHREMALAAISGLN 242 (537)
Q Consensus 206 ----~I~~v~i~~d~---~g~~~g~afV~F~~~~~A~~Ai~~l~ 242 (537)
.|+.|.|+... ..-.+.||.++|-+...|...++-+.
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 37788887752 23467899999999999999988766
No 208
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.35 E-value=0.54 Score=41.32 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCCCCEEEEcCCCCCCC-HHHHHH---HhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009354 86 SGIPAKLYVAPVPRTAT-EEDIRP---LFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~t-e~~L~~---~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
+.+-.+|.|+=|..++. .+||+. .++.||+|.+|.+.-.. -|.|.|.|..+|.+|+.++.... -+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~----pg 151 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRA----PG 151 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCC----CC
Confidence 34558899988887774 355654 45679999999876543 69999999999999999987642 24
Q ss_pred eeEEEeecc
Q 009354 162 ASIKVRFAD 170 (537)
Q Consensus 162 ~~l~v~~a~ 170 (537)
..+...|-.
T Consensus 152 tm~qCsWqq 160 (166)
T PF15023_consen 152 TMFQCSWQQ 160 (166)
T ss_pred ceEEeeccc
Confidence 566666643
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.74 E-value=0.14 Score=53.13 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=51.7
Q ss_pred CHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccC
Q 009354 193 SKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 193 te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~ 261 (537)
+-++|...|..||+|..|.|-. +.-.|.|+|.+..+|-+|.. ..+..+ ++|.|+|.|.++
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~-----~~~~a~vTF~t~aeag~a~~-s~~avl---nnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDY-----SSLHAVVTFKTRAEAGEAYA-SHGAVL---NNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCccccccccC-----chhhheeeeeccccccchhc-ccccee---cCceeEEEEecC
Confidence 5689999999999999998876 34578999999999987765 788887 899999999876
No 210
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.66 E-value=0.7 Score=49.11 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=48.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEE--HGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
+.+.|.|+-||.++-+|+++.||.. +-.+++|.+-.+. -=||+|++..||..|.+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 4578889999999999999999974 7788889876553 25999999999999986653
No 211
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=90.66 E-value=0.84 Score=50.51 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q 009354 141 FEEAGNAIRAL 151 (537)
Q Consensus 141 ~e~A~~Ai~~l 151 (537)
..++.+|++++
T Consensus 209 ~~eiIrClka~ 219 (1102)
T KOG1924|consen 209 LQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHH
Confidence 34444555443
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.58 E-value=0.055 Score=58.43 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009354 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
..+..++|||||...+..+-++.+...+|.|.+++... |||.+|....-+.+|+..++-..+ ++.+...+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~-~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNI-DDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCC-Ccchhhcc
Confidence 34568999999999999999999999999998776543 999999999999999977765443 33333333
Q ss_pred Eeec---cCCCCC--------CCCC---CCCcccccCCcCCCHHHHHHHHcCCCC
Q 009354 166 VRFA---DGEREH--------PVAP---PDKLYVGCLSKQTSKKEIEEVFSPYGH 206 (537)
Q Consensus 166 v~~a---~~~~~~--------~~~~---~~~l~V~nl~~~~te~~L~~~F~~~G~ 206 (537)
+..- +.++.. ...+ .+-++|++++....+......|.--+.
T Consensus 107 ~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s 161 (668)
T KOG2253|consen 107 VDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSS 161 (668)
T ss_pred chhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccch
Confidence 3210 000000 0111 344677777776666555555543333
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.56 E-value=1.1 Score=34.25 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceee
Q 009354 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIF 157 (537)
Q Consensus 99 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~ 157 (537)
..++-+||+..+..|+- . +|..|+ | || ||.|.+.++|+++....+|..++
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~--~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-D--RIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCc-c--eEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEE
Confidence 45778999999999984 3 344454 2 33 89999999999999999998774
No 214
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.47 E-value=0.7 Score=42.92 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=53.2
Q ss_pred CCCcccccCCcCCCHHHHHHHHcC-CCCe---eEEEEEeec--CC-CcceEEEEEEcCHHHHHHHHHHcCCceEecCCC-
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSP-YGHI---EDIFIVRDE--LK-QSRGCAFVQFSHREMALAAISGLNGTFTMRGSD- 251 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~-~G~I---~~v~i~~d~--~g-~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g- 251 (537)
..+|.|++||+.+|++++.+.++. ++.- ..+.-.... .. ..-.-|+|.|.+.+++..-++.++|..+.+..|
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999998877 6654 223211221 11 123568999999999999999999988865443
Q ss_pred -ceEEEEEccC
Q 009354 252 -QPLVVRIADP 261 (537)
Q Consensus 252 -~~l~V~~a~~ 261 (537)
....|.+|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3556777754
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.36 E-value=0.18 Score=55.93 Aligned_cols=74 Identities=24% Similarity=0.251 Sum_probs=60.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeecc
Q 009354 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFAD 170 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 170 (537)
+.++-|.+-+.+..-|..+|..||.|.+++..++-+ .|.|+|.+.+.|..|+++|+|+.+..- +.+.+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEecc
Confidence 344555566778888999999999999999988864 899999999999999999999987543 4567777775
Q ss_pred C
Q 009354 171 G 171 (537)
Q Consensus 171 ~ 171 (537)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 3
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.06 E-value=0.19 Score=52.33 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=60.9
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009354 88 IPAKLYVAPVPRTA-TEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 88 ~~~~LfVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
..+.|-+.-+|+.. +.++|...|..||.|..|.|-+... .|.|+|.+..+|-+|. ..++-.| +++.|+|
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~-~s~~avl---nnr~iKl 440 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAY-ASHGAVL---NNRFIKL 440 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchh-cccccee---cCceeEE
Confidence 34666677777665 5689999999999999999876632 6999999999997776 6777777 7899999
Q ss_pred eeccCCC
Q 009354 167 RFADGER 173 (537)
Q Consensus 167 ~~a~~~~ 173 (537)
.|-+...
T Consensus 441 ~whnps~ 447 (526)
T KOG2135|consen 441 FWHNPSP 447 (526)
T ss_pred EEecCCc
Confidence 9987643
No 217
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.68 E-value=0.79 Score=45.18 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=47.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009354 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
=|-|-++|+.-. ..|..+|++||.|++.....+ -.+-+|.|.++.+|.+|| ..||+.| +| ...|-|...
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KAL-skng~ii-~g-~vmiGVkpC 267 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKAL-SKNGTII-DG-DVMIGVKPC 267 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhh-hhcCeee-cc-ceEEeeeec
Confidence 344446665544 457788999999988764422 249999999999999999 6788755 32 345555543
No 218
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.40 E-value=1 Score=42.01 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=43.7
Q ss_pred CHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc--CceeecCCceeEEEeecc
Q 009354 102 TEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN--GHYIFPGEQASIKVRFAD 170 (537)
Q Consensus 102 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~--g~~~~~g~~~~l~v~~a~ 170 (537)
..+.|+++|..|+.+..+.+++.- +=..|.|.+.++|.+|...|+ +..+ .+..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~---~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSF---NGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEE---TTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhccccccc---CCCceEEEEcc
Confidence 457899999999998888777653 358999999999999999999 7776 56778888874
No 219
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.93 E-value=0.5 Score=38.36 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=43.2
Q ss_pred EEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCC-----CCCCCCcccccCCcCCCHHHHHHHH
Q 009354 134 CFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-----VAPPDKLYVGCLSKQTSKKEIEEVF 201 (537)
Q Consensus 134 aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~-----~~~~~~l~V~nl~~~~te~~L~~~F 201 (537)
|.|+|.+..-|++.++.-.-..-+.+....+++.......... ....++|.|.|||+..++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999884432222222323334444332222111 3456789999999999999998764
No 220
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.79 E-value=0.3 Score=54.22 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=62.6
Q ss_pred cccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 183 l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
.++-|.+-..+..-|..+|++||.|.++...++ -..|.|+|.+.+.|..|+++++|+.+.. -|-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~-~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSV-TGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccc-cCCceeEEecccc
Confidence 445556667888999999999999999988874 4589999999999999999999998754 4778999999863
No 221
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.01 E-value=2.7 Score=32.16 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEe
Q 009354 191 QTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247 (537)
Q Consensus 191 ~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 247 (537)
.++-++++..+.+|+- . +|..|. .|| ||.|.|..+|+++....+|..++
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC----CEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 5788999999999953 2 333442 333 89999999999999999999874
No 222
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=11 Score=41.04 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHcCCceE
Q 009354 230 HREMALAAISGLNGTFT 246 (537)
Q Consensus 230 ~~~~A~~Ai~~l~g~~~ 246 (537)
+-+++..+...||+..+
T Consensus 26 ~ge~~~E~~d~LNdEtf 42 (728)
T KOG4592|consen 26 DGEEAHETMDRLNDETF 42 (728)
T ss_pred hHHHHHHHhhhhccccc
Confidence 35788889999998877
No 223
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=85.73 E-value=0.15 Score=54.37 Aligned_cols=36 Identities=36% Similarity=0.474 Sum_probs=33.2
Q ss_pred CCCCCceeeCCCCCeeeeeCCccceeccCChhhHHH
Q 009354 432 PECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLF 467 (537)
Q Consensus 432 ~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~~ 467 (537)
....|.++..+||+.||||++|..+.|++++.+.+-
T Consensus 124 ~~p~~~~~~~~~~r~~~~nci~el~~~ek~k~~~~r 159 (463)
T KOG0152|consen 124 GDPRWSEHISEDGRKIYENCITELSQREKEKKLEDR 159 (463)
T ss_pred cccchhhccchhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 456799999999999999999999999999998877
No 224
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.53 E-value=3.3 Score=44.51 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=62.1
Q ss_pred CCCCCCcccccCCcC-CCHHHHHHHHcCC----CCeeEEEEEeecCC-----------C---------------------
Q 009354 177 VAPPDKLYVGCLSKQ-TSKKEIEEVFSPY----GHIEDIFIVRDELK-----------Q--------------------- 219 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~-~te~~L~~~F~~~----G~I~~v~i~~d~~g-----------~--------------------- 219 (537)
....++|-|.||.++ +..++|.-+|+.| |.|.+|.|.....| .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999984 8899999988765 57999988654221 1
Q ss_pred ---------------cc-eEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 220 ---------------SR-GCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 220 ---------------~~-g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
.+ -||.|+|.+.+.|.+..+.++|..+-. .+..|.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs-S~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES-SANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc-ccceeeeeec
Confidence 11 379999999999999999999999733 3556666664
No 225
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.23 E-value=5 Score=43.20 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=62.0
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEeccCC----------CCCC---------------------
Q 009354 86 SGIPAKLYVAPVPRT-ATEEDIRPLFEEH----GNVIEVVLPKDK----------RTGQ--------------------- 129 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~----------~tg~--------------------- 129 (537)
....++|-|-|+.|+ +.-+||.-+|..| |.|++|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345789999999976 7788999999877 699999987521 0111
Q ss_pred ---------------cc-ceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009354 130 ---------------QQ-GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 130 ---------------~k-G~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
-+ -||.|+|.+.+.|.+..+.+.|..+ ...+..|.++|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~Ef-EsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEF-ESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCccee-ccccceeeeeec
Confidence 11 3699999999999999999999876 333455666654
No 226
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.00 E-value=4.6 Score=31.60 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=36.0
Q ss_pred cCCCHHHHHHHHcCCCC-----eeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009354 190 KQTSKKEIEEVFSPYGH-----IEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 190 ~~~te~~L~~~F~~~G~-----I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a 259 (537)
+.++..+|..++...+. |-.|.|.. .|+||+-... .|..+++.|++..+ .|+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~~-~a~~v~~~l~~~~~---~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPEE-VAEKVLEALNGKKI---KGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-TT--HHHHHHHHTT--S---SS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECHH-HHHHHHHHhcCCCC---CCeeEEEEEC
Confidence 46888999999977655 44667755 4899988654 88999999999988 8999999864
No 227
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.38 E-value=7.2 Score=30.47 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHhhccC-----CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009354 99 RTATEEDIRPLFEEHG-----NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 99 ~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
..++..+|..++...+ .|-.|.|..+ |+||+-.. +.|+.+++.|++..+ +++.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~---~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKI---KGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--S---SS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCC---CCeeEEEEEC
Confidence 4578888888887664 4567777665 89999865 588999999999988 6788887653
No 228
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.03 E-value=5.8 Score=39.32 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=47.5
Q ss_pred cccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 185 VGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 185 V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
|-+++.. ...-|..+|++||.|++...-. ...+-+|.|.++.+|.+||. -||++| . ++-.|-|.-...+
T Consensus 202 VfGFppg-~~s~vL~~F~~cG~Vvkhv~~~-----ngNwMhirYssr~~A~KALs-kng~ii-~-g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 202 VFGFPPG-QVSIVLNLFSRCGEVVKHVTPS-----NGNWMHIRYSSRTHAQKALS-KNGTII-D-GDVMIGVKPCTDK 270 (350)
T ss_pred EeccCcc-chhHHHHHHHhhCeeeeeecCC-----CCceEEEEecchhHHHHhhh-hcCeee-c-cceEEeeeecCCH
Confidence 3355443 3456788999999988765543 45688999999999999997 567665 1 2345555554444
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=75.65 E-value=19 Score=37.26 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=32.0
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEeccC
Q 009354 85 DSGIPAKLYVAPVPRT-ATEEDIRPLFEEH----GNVIEVVLPKD 124 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~d 124 (537)
.+....+|-|-||.|+ +.-.+|+-+|+.| |.|..|.|...
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3556788999999976 7778999999876 67888888765
No 230
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=69.30 E-value=2.1 Score=46.67 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=62.0
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009354 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V 256 (537)
..+..++||+|+.+.+..+-++.+...+|.|..+.... |||..|.....+.+|+..++-..+ +|..+.+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~---~~~kl~~ 105 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNI---DDQKLIE 105 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCC---Ccchhhc
Confidence 45678999999999999999999999999988776654 999999999999999998888776 6777776
Q ss_pred EEc
Q 009354 257 RIA 259 (537)
Q Consensus 257 ~~a 259 (537)
...
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 654
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.87 E-value=15 Score=37.82 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=49.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc
Q 009354 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGN-VIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
+.+-...|=|-++|.....+||..+|+.|+. --+|+.+.|. .||-.|.+...|..|| .|.
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaL-t~k 447 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEAL-TLK 447 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHh-hcc
Confidence 3345578889999999888999999999963 4567777775 8999999999999999 553
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.54 E-value=16 Score=36.36 Aligned_cols=79 Identities=16% Similarity=0.298 Sum_probs=58.6
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec--------CCCcceEEEEEEcCHHHHHHHH----HHcCC--ce
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE--------LKQSRGCAFVQFSHREMALAAI----SGLNG--TF 245 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~--------~g~~~g~afV~F~~~~~A~~Ai----~~l~g--~~ 245 (537)
.+.|...|+..+++-..+...|-+||.|++|+++.+. .........+.|-+++.|..-. ..|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999999874 2233467889999998877643 22221 12
Q ss_pred EecCCCceEEEEEccC
Q 009354 246 TMRGSDQPLVVRIADP 261 (537)
Q Consensus 246 ~~~g~g~~l~V~~a~~ 261 (537)
+ ....|.+.|..-
T Consensus 95 L---~S~~L~lsFV~l 107 (309)
T PF10567_consen 95 L---KSESLTLSFVSL 107 (309)
T ss_pred c---CCcceeEEEEEE
Confidence 2 457788877764
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=62.14 E-value=15 Score=27.70 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCeeEEEEEee
Q 009354 195 KEIEEVFSPYGHIEDIFIVRD 215 (537)
Q Consensus 195 ~~L~~~F~~~G~I~~v~i~~d 215 (537)
.+||++|+..|.|.-+.+-..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 689999999999987777554
No 234
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=62.13 E-value=32 Score=33.76 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=49.6
Q ss_pred eEEEEEccHHH----HHHHHHHhcCceeec-CCceeEEEeeccCC--------------------CCCCCCCCCCccccc
Q 009354 133 YCFVKFTIFEE----AGNAIRALNGHYIFP-GEQASIKVRFADGE--------------------REHPVAPPDKLYVGC 187 (537)
Q Consensus 133 ~aFV~F~~~e~----A~~Ai~~l~g~~~~~-g~~~~l~v~~a~~~--------------------~~~~~~~~~~l~V~n 187 (537)
.-||.|.-.-. ..+.+..|+|..+-. |-.-.|+|..+..+ .-.......+||+.+
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ 156 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAG 156 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecC
Confidence 67888865433 455566677766521 11122333322211 111133467888888
Q ss_pred CCcC------------CCHHHHHHHHcCCCCeeEEEEEe
Q 009354 188 LSKQ------------TSKKEIEEVFSPYGHIEDIFIVR 214 (537)
Q Consensus 188 l~~~------------~te~~L~~~F~~~G~I~~v~i~~ 214 (537)
||-. -+++.|+..|..||.|..|.|..
T Consensus 157 ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 157 IPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 8732 46788999999999999887753
No 235
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=58.74 E-value=5.4 Score=36.69 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=52.1
Q ss_pred CcccccCCcCC-----CHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc-eEE
Q 009354 182 KLYVGCLSKQT-----SKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ-PLV 255 (537)
Q Consensus 182 ~l~V~nl~~~~-----te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~-~l~ 255 (537)
.|.+++++..+ ......++|..|.+.....+++ +.+...|.|.+.+.|.+|...+++..+ .|+ .++
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f---~~~~~~k 83 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSF---NGKNELK 83 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhccc---CCCceEE
Confidence 45556665543 2344556777777766666666 566778999999999999999999987 455 777
Q ss_pred EEEccC
Q 009354 256 VRIADP 261 (537)
Q Consensus 256 V~~a~~ 261 (537)
.-|+.+
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 777765
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.80 E-value=14 Score=36.33 Aligned_cols=49 Identities=12% Similarity=0.298 Sum_probs=37.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEeccCCCCCCccceEEEEEccHH
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNV-IEVVLPKDKRTGQQQGYCFVKFTIFE 142 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~aFV~F~~~e 142 (537)
...-||++||+.++--.||+..+.+.|-+ .++.. .-++|-||++|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 35679999999999999999999987743 23322 234678999998754
No 237
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=56.29 E-value=13 Score=33.08 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=64.6
Q ss_pred EEEEcCCC--CCCCHHHHHHHhh----ccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009354 91 KLYVAPVP--RTATEEDIRPLFE----EHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 91 ~LfVgnLp--~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
...||.+- .+.+-..|...+. ..|.+. ++-+. .++..+.|.+.+++.++++. |...+. +..+
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~-i~~l~-------~~~fl~~F~~~~d~~~vl~~--~p~~~~--~~~~ 84 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVK-IRDLG-------DNLFLFQFESEEDRQRVLKG--GPWNFN--GHFL 84 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEE-EEEeC-------CCeEEEEEEeccceeEEEec--cccccc--ccch
Confidence 44555553 3455555555554 344433 22222 25899999999999998842 222222 2344
Q ss_pred EEeeccCCCCCC----CCCCCCcccccCCcC-CCHHHHHHHHcCCCCeeEEEEEe
Q 009354 165 KVRFADGEREHP----VAPPDKLYVGCLSKQ-TSKKEIEEVFSPYGHIEDIFIVR 214 (537)
Q Consensus 165 ~v~~a~~~~~~~----~~~~~~l~V~nl~~~-~te~~L~~~F~~~G~I~~v~i~~ 214 (537)
.+..-+...... .....=|-|.|||.. .+++-|+.+.+..|.+.++....
T Consensus 85 ~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 85 ILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 444333221111 112223667799987 67788899999999988876554
No 238
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.60 E-value=14 Score=36.17 Aligned_cols=71 Identities=27% Similarity=0.542 Sum_probs=45.3
Q ss_pred CCCCCEEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEecc-----CCCCCCc-----cceEE--------
Q 009354 86 SGIPAKLYVAPVPRT------------ATEEDIRPLFEEHGNVIEVVLPK-----DKRTGQQ-----QGYCF-------- 135 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~------------~te~~L~~~F~~~G~I~~v~i~~-----d~~tg~~-----kG~aF-------- 135 (537)
+....+||+.+||-. -+++.|+..|+.||.|..|.|.. ..-+|+. +||+|
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 344578999999832 25778999999999999888753 2224544 34443
Q ss_pred -EEEccHHHHHHHHHHhcCcee
Q 009354 136 -VKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 136 -V~F~~~e~A~~Ai~~l~g~~~ 156 (537)
|+|..-..-..|+..|.|..+
T Consensus 226 yvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchH
Confidence 444444445556666665443
No 239
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=52.58 E-value=43 Score=26.98 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=42.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHH
Q 009354 91 KLYVAPVPRTATEEDIRPLFEE-HG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 150 (537)
+-|+-.++.+++..+|++.++. || .|.+|+.+.-+. ..-=|||.+...++|.+....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 3455567889999999999997 67 678887766541 112499999999998887543
No 240
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=50.68 E-value=2.8 Score=44.81 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=54.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
..++||+.|++++++-.+|..++..+--+..+.+..+..-.+...+++|+|+---....|+.+||+..+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 458899999999999999999999987666666654433345556899999988888888888887654
No 241
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.08 E-value=17 Score=33.48 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=52.7
Q ss_pred CCEEEEcCCCCCCC-----HHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009354 89 PAKLYVAPVPRTAT-----EEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 89 ~~~LfVgnLp~~~t-----e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
..++++.+|+.++- ......+|..|.+..-..+++.. +..-|.|.+.+.|.+|...+++..+..+ ..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~--~~ 81 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGK--NE 81 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCC--ce
Confidence 35677888875542 23455677877776666665543 4677899999999999999998877322 26
Q ss_pred EEEeeccCC
Q 009354 164 IKVRFADGE 172 (537)
Q Consensus 164 l~v~~a~~~ 172 (537)
++..++...
T Consensus 82 ~k~yfaQ~~ 90 (193)
T KOG4019|consen 82 LKLYFAQPG 90 (193)
T ss_pred EEEEEccCC
Confidence 777777543
No 242
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=48.20 E-value=25 Score=34.63 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=35.9
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCe-eEEEEEeecCCCcceEEEEEEcCHH
Q 009354 181 DKLYVGCLSKQTSKKEIEEVFSPYGHI-EDIFIVRDELKQSRGCAFVQFSHRE 232 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I-~~v~i~~d~~g~~~g~afV~F~~~~ 232 (537)
.-||++||+.++...||+..+.+.|.+ .++.+.- .+|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 459999999999999999999887653 2333322 5778999997753
No 243
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.61 E-value=69 Score=33.96 Aligned_cols=8 Identities=38% Similarity=0.351 Sum_probs=4.6
Q ss_pred EEEEcCHH
Q 009354 225 FVQFSHRE 232 (537)
Q Consensus 225 fV~F~~~~ 232 (537)
.++|.|.+
T Consensus 318 e~dfSDDE 325 (483)
T KOG2236|consen 318 EQDFSDDE 325 (483)
T ss_pred hhccchHH
Confidence 36776644
No 244
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.11 E-value=12 Score=32.22 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=28.3
Q ss_pred CHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHH-HHHHHHHhcC
Q 009354 102 TEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEE-AGNAIRALNG 153 (537)
Q Consensus 102 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai~~l~g 153 (537)
+.++|++.|+.|..+. ++...++ .-++|++.|+|.+.-. -..|+ .|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~-~l~~ 78 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM-RLEK 78 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH-HHHH
Confidence 4578999999998764 6666664 3678999999976433 34444 4443
No 245
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=47.04 E-value=59 Score=25.73 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=41.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHH
Q 009354 91 KLYVAPVPRTATEEDIRPLFEE-HG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 150 (537)
+-|+-.++.+++..+|++.++. || .|.+|+.+.-+. ..-=|||.+...++|.+.-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 3556667899999999999986 66 677777665541 112499999998888776533
No 246
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=45.96 E-value=6.9 Score=40.79 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=18.1
Q ss_pred CCCeeeeeCCccceeccCChhhHH
Q 009354 443 DGNKYYYNCETCESRWDKPEEYLL 466 (537)
Q Consensus 443 ~g~~y~~~~~~~~~~w~~p~~~~~ 466 (537)
+.|.|+||..-++|||+-|+.+..
T Consensus 382 ~eKLYHyN~~GGtSTW~LP~~w~~ 405 (425)
T PF12905_consen 382 EEKLYHYNPDGGTSTWTLPDSWAG 405 (425)
T ss_dssp G-EEEEEESS-CEEEEE--HHHCT
T ss_pred cceeEEEcCCCCeeeeeCCccccC
Confidence 469999999999999999998865
No 247
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=45.79 E-value=23 Score=38.21 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=12.6
Q ss_pred eEEEEEEcCHHHHHHHHHHc
Q 009354 222 GCAFVQFSHREMALAAISGL 241 (537)
Q Consensus 222 g~afV~F~~~~~A~~Ai~~l 241 (537)
.+.|.+..+.++-...|.+|
T Consensus 39 ~hVF~K~~tkDEYl~lvAkl 58 (742)
T KOG4274|consen 39 SHVFLKAKTKDEYLSLVAKL 58 (742)
T ss_pred HHHHHhhhhHHHHHHHHHHH
Confidence 45677777777666655544
No 248
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=44.96 E-value=10 Score=39.19 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=52.9
Q ss_pred CCCEEEEcCCCCCCCHH--------HHHHHhhc--cCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHH
Q 009354 88 IPAKLYVAPVPRTATEE--------DIRPLFEE--HGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~--------~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 148 (537)
..+.+|+.+.....+.+ ++...|.. ++++..|...+|..+..++|-.|++|...+.+.+++
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 45789999998766655 89999998 688899999999878899999999999999999876
No 249
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=44.79 E-value=21 Score=30.33 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=31.3
Q ss_pred CCCCCCHHHHHHHhhc---cCCeEEEEeccCCCCCCccceEEEEEccHH
Q 009354 97 VPRTATEEDIRPLFEE---HGNVIEVVLPKDKRTGQQQGYCFVKFTIFE 142 (537)
Q Consensus 97 Lp~~~te~~L~~~F~~---~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e 142 (537)
-|..+|-.+|+++|+. |-.|.+-.+.+|..-.-+-..||..|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 3688999999999985 545665556665433333447999887653
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.47 E-value=39 Score=34.38 Aligned_cols=56 Identities=23% Similarity=0.273 Sum_probs=37.9
Q ss_pred EEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHc
Q 009354 134 CFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFS 202 (537)
Q Consensus 134 aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~ 202 (537)
|||.|++..+|..|++.+.... ...+++..|- +.+-|+-.||..+..+..+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-----~~~~~v~~AP--------eP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-----PNSWRVSPAP--------EPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-----CCCceEeeCC--------CcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998665442 2344555542 334566677776666666666554
No 251
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=43.82 E-value=11 Score=32.37 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHH
Q 009354 192 TSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232 (537)
Q Consensus 192 ~te~~L~~~F~~~G~I~~v~i~~d~~g~~~g~afV~F~~~~ 232 (537)
.+.++|++.|+.|..++ ++.+.+.. ...|+++|+|.+.-
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDW 67 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCCh
Confidence 45689999999998764 55555544 36899999996643
No 252
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=43.02 E-value=2e+02 Score=32.49 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=45.9
Q ss_pred cCCCHHHHHHHHcCCCCee-----EEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009354 190 KQTSKKEIEEVFSPYGHIE-----DIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 190 ~~~te~~L~~~F~~~G~I~-----~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g~~l~V~~a~~~ 262 (537)
+.++..+|-.++..-+.|. .|.|+. .|.||+... +.|...+..|++..+ +|+.|.|..+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~-------~~s~v~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA-------SHSTIELPK-GMPGEVLQHFTRTRI---LNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC-------CceEEEcCh-hhHHHHHHHhccccc---cCCceEEEECCCC
Confidence 4577788887776655543 466654 488998854 468888999998887 8999999987644
No 253
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=42.67 E-value=30 Score=29.35 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=58.8
Q ss_pred CCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCC-
Q 009354 97 VPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREH- 175 (537)
Q Consensus 97 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~- 175 (537)
||+-++ .|-++|+.-|+|.+|..+..- .+ ..|+-.++|..-..+ ..|++.........
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqy-------------pd----ndal~~~~G~lE~vD--g~i~IGs~q~~~sV~ 69 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQY-------------PD----NDALLYVHGTLEQVD--GNIRIGSGQTPASVR 69 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEecc-------------CC----chhhheeeeehhhcc--CcEEEccCCCcccEE
Confidence 565554 488999999999988654431 11 123334444322111 12344333211110
Q ss_pred ---CCCCCCCcccccCCcCCCHHHHHHHHcC---CCCeeEEEEEee--cCCCcceEEEEEEcCH
Q 009354 176 ---PVAPPDKLYVGCLSKQTSKKEIEEVFSP---YGHIEDIFIVRD--ELKQSRGCAFVQFSHR 231 (537)
Q Consensus 176 ---~~~~~~~l~V~nl~~~~te~~L~~~F~~---~G~I~~v~i~~d--~~g~~~g~afV~F~~~ 231 (537)
.......+| -|+.+|-.+|+++|++ |-.|..-.+.+| +.| +-..||.-|...
T Consensus 70 i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 70 IQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred EecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 011122333 4678999999999975 555655555555 233 334678877654
No 254
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=42.29 E-value=37 Score=35.06 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=53.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeccCC-CC-CCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009354 88 IPAKLYVAPVPRTATEEDIRPLFEEHG-NVIEVVLPKDK-RT-GQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~-~t-g~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
....|.|.+||+..++++|.+-...|- .|.-..+.... .. ..-.+.|||.|...++.....+.++|..+++.++..
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kggt 84 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKGGT 84 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCCCC
Confidence 357889999999999999988777763 23333333211 01 112467999999999988888888998887776633
No 255
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.48 E-value=1.5e+02 Score=31.51 Aligned_cols=7 Identities=14% Similarity=-0.102 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 009354 231 REMALAA 237 (537)
Q Consensus 231 ~~~A~~A 237 (537)
...|.++
T Consensus 327 Eaeak~~ 333 (483)
T KOG2236|consen 327 EAEAKQM 333 (483)
T ss_pred HHHHHHH
Confidence 3344433
No 256
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=38.99 E-value=77 Score=27.11 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHhhc-cC---C-eEEEEeccCCCCCCccceEEEEEccHHHHHH
Q 009354 99 RTATEEDIRPLFEE-HG---N-VIEVVLPKDKRTGQQQGYCFVKFTIFEEAGN 146 (537)
Q Consensus 99 ~~~te~~L~~~F~~-~G---~-I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 146 (537)
.+++.+||++-+.+ |- . |.-..+...-..|++.|||.| |++.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46788899887765 32 2 222233334446788899987 666666553
No 257
>PRK11901 hypothetical protein; Reviewed
Probab=36.86 E-value=63 Score=32.81 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=37.9
Q ss_pred CCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEE--EEcCHHHHHHHHHHcCCc
Q 009354 188 LSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFV--QFSHREMALAAISGLNGT 244 (537)
Q Consensus 188 l~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV--~F~~~~~A~~Ai~~l~g~ 244 (537)
|--...++.|..|..+++ +..+.+++. ..|+. .|.+| .|.+.++|..|+..|-..
T Consensus 250 L~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 250 LSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eecCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 333456788888888775 566777665 33433 34433 789999999999988654
No 258
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.09 E-value=76 Score=25.59 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=39.6
Q ss_pred cccccCCcCCCHHHHHHHHcC-CCC-eeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHH
Q 009354 183 LYVGCLSKQTSKKEIEEVFSP-YGH-IEDIFIVRDELKQSRGCAFVQFSHREMALAAISG 240 (537)
Q Consensus 183 l~V~nl~~~~te~~L~~~F~~-~G~-I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~ 240 (537)
-|+-..+...+..+|++.++. ||. |.+|....-.. ...=|||++....+|.+....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CcEEEEEEeCCCCcHHHHHHh
Confidence 344456778899999999977 664 77777666532 334599999988888776543
No 259
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=35.82 E-value=82 Score=24.23 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=43.0
Q ss_pred HHHHHHhhccC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCC
Q 009354 104 EDIRPLFEEHG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGE 172 (537)
Q Consensus 104 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 172 (537)
++|++-|...| .|..|.-+..+.++..--.-||++....+...++ +=+.+ .+..++|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l---~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTL---CGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhh---CCeEEEEecCCCC
Confidence 56888888888 6888888888767777788899988766644433 22223 3456777766544
No 260
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=35.74 E-value=45 Score=30.78 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=40.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEeccCCCCC--CccceEEEEEccHHHHHHHHHHhc
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEH-GNVIEVVLPKDKRTG--QQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg--~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
...+++|.. .|++.|.++..-- |.+..|.+.+.. .+ ..+|--||.|.+.+.|.++++.-.
T Consensus 109 ~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 109 IKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred HHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 345788887 4555454443311 788887765543 34 578999999999999999885543
No 261
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=35.43 E-value=28 Score=21.81 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.5
Q ss_pred eCCCCCeeeeeCCccceeccC
Q 009354 440 TCPDGNKYYYNCETCESRWDK 460 (537)
Q Consensus 440 ~~~~g~~y~~~~~~~~~~w~~ 460 (537)
.+.+|+.|-+|..|++..|+.
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EcCCCEEEEEEcccCcEEEEc
Confidence 356899999999999999985
No 262
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=34.12 E-value=21 Score=29.07 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhh
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFE 111 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~ 111 (537)
...++|.|.|||...++++|++..+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3458999999999999999998644
No 263
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.41 E-value=1.1e+02 Score=31.94 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=45.5
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCC-eeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHH
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGH-IEDIFIVRDELKQSRGCAFVQFSHREMALAAISG 240 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~-I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~ 240 (537)
-...|-|.++|...--+||...|+.|+. --+|+++. +..+|..|.+...|..|+-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD------dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD------DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee------cceeEEeecchHHHHHHhhc
Confidence 4567888999999988999999999875 34566664 35899999999999999874
No 264
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.78 E-value=33 Score=32.97 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=28.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE
Q 009354 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEV 119 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v 119 (537)
....+||+-|||..++++.|.++.+.+|.+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 456899999999999999999999999965443
No 265
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.72 E-value=90 Score=23.58 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=14.5
Q ss_pred HHHHHHhhccCCeEEEEe
Q 009354 104 EDIRPLFEEHGNVIEVVL 121 (537)
Q Consensus 104 ~~L~~~F~~~G~I~~v~i 121 (537)
.+||++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999865443
No 266
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=30.67 E-value=17 Score=36.88 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=0.0
Q ss_pred EEEEEcc
Q 009354 254 LVVRIAD 260 (537)
Q Consensus 254 l~V~~a~ 260 (537)
|.|..|.
T Consensus 256 Lav~vAe 262 (468)
T PF11498_consen 256 LAVTVAE 262 (468)
T ss_dssp -------
T ss_pred Hhhhhcc
Confidence 3333333
No 267
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=29.21 E-value=44 Score=31.85 Aligned_cols=30 Identities=27% Similarity=0.648 Sum_probs=26.1
Q ss_pred CCCceeeCCCCCeeeeeCCccceeccCChh
Q 009354 434 CDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 434 ~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
..|.-.-+-.||+||-+-+++.+-|.-|-|
T Consensus 96 pgWav~~T~~grkYYIDHn~~tTHW~HPle 125 (271)
T KOG1891|consen 96 PGWAVEFTTEGRKYYIDHNNRTTHWVHPLE 125 (271)
T ss_pred CCcceeeEecCceeEeecCCCcccccChhh
Confidence 349888888999999999999999998844
No 268
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=26.22 E-value=22 Score=36.02 Aligned_cols=7 Identities=43% Similarity=0.525 Sum_probs=0.0
Q ss_pred hhhcccc
Q 009354 348 QLSQLSL 354 (537)
Q Consensus 348 q~~q~~~ 354 (537)
+..+|.+
T Consensus 361 QqQQm~l 367 (468)
T PF11498_consen 361 QQQQMQL 367 (468)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3444544
No 269
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=26.01 E-value=1.3e+02 Score=32.77 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=7.7
Q ss_pred eEEEEEccHHHHHHHH
Q 009354 133 YCFVKFTIFEEAGNAI 148 (537)
Q Consensus 133 ~aFV~F~~~e~A~~Ai 148 (537)
|.|.+..+.++-...|
T Consensus 40 hVF~K~~tkDEYl~lv 55 (742)
T KOG4274|consen 40 HVFLKAKTKDEYLSLV 55 (742)
T ss_pred HHHHhhhhHHHHHHHH
Confidence 4455555555544443
No 270
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=25.27 E-value=60 Score=33.77 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=5.9
Q ss_pred ccHHHHHHHH
Q 009354 139 TIFEEAGNAI 148 (537)
Q Consensus 139 ~~~e~A~~Ai 148 (537)
...|+..+||
T Consensus 164 ~EeEdiaKAi 173 (462)
T KOG2199|consen 164 QEEEDIAKAI 173 (462)
T ss_pred ccHHHHHHHH
Confidence 3455566666
No 271
>PRK10905 cell division protein DamX; Validated
Probab=24.74 E-value=1.3e+02 Score=30.58 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=37.0
Q ss_pred cCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEE--EEEEcCHHHHHHHHHHcCCc
Q 009354 187 CLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCA--FVQFSHREMALAAISGLNGT 244 (537)
Q Consensus 187 nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~a--fV~F~~~~~A~~Ai~~l~g~ 244 (537)
-|.-..+++.|++|..++| +....++.. .+|+.+ |. +=.|.++++|++|+..|-..
T Consensus 251 QL~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 251 QLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred EEEecCCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHH
Confidence 3344457788988888885 454445544 344332 33 23789999999999988654
No 272
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.27 E-value=2.2e+02 Score=21.93 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=30.6
Q ss_pred HHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc
Q 009354 104 EDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 104 ~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
++|.+.+..+| +...++.-.- .-++.|+-+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG----~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG----GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS----SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC----CCCeEEEEECCHHHHHHHHHHHH
Confidence 46777788889 5555653320 12577888889999999888774
No 273
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.22 E-value=16 Score=38.06 Aligned_cols=66 Identities=8% Similarity=-0.102 Sum_probs=52.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009354 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
.+.|+..||...++++|.-+|..||.|..+.+.+.-..|..+-.+||+-.+ .+|..+|..+....+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~ 69 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTT 69 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhh
Confidence 456788999999999999999999999988888776667777788988765 456677766655544
No 274
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.17 E-value=1.2e+02 Score=24.22 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=24.6
Q ss_pred CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCce
Q 009354 115 NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY 155 (537)
Q Consensus 115 ~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~ 155 (537)
.|.++....+ -+||-||+=.+..++.+|++.+.+..
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4556554333 57999999999999999997776643
No 275
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.43 E-value=2e+02 Score=25.79 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=37.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHH
Q 009354 91 KLYVAPVPRTATEEDIRPLFEE-HG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 148 (537)
+-|+--++...+..+|++.++. || .|..|..+.-+. |. -=|||.+....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHH
Confidence 3455567889999999999986 66 577776665442 11 13899998877755443
No 276
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.17 E-value=82 Score=32.59 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=52.1
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCC-eeEEEEEeec---CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCC
Q 009354 180 PDKLYVGCLSKQTSKKEIEEVFSPYGH-IEDIFIVRDE---LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSD 251 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~-I~~v~i~~d~---~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~~g~g 251 (537)
.+.+.|.+||...++++|.+....|-. +....+.... .....+.++|.|...++...-.+.++|.+++...|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 356778899999999999988877643 3333333221 12234678999999999888889999999875544
No 277
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=22.69 E-value=1.6e+02 Score=22.73 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=40.1
Q ss_pred HHHHHHhhccC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCC
Q 009354 104 EDIRPLFEEHG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGE 172 (537)
Q Consensus 104 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 172 (537)
++|++-|..+| .+..|.-+..++++..-..-||+.....+.... |+=+.+ .+..+.|......
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I---l~ik~L---g~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI---LNIKTL---GGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce---Eeehhh---CCeeEEEecCccc
Confidence 46788899998 688888888877676667788888765433331 222222 3355666665443
No 278
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.89 E-value=65 Score=21.49 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHhhccC
Q 009354 99 RTATEEDIRPLFEEHG 114 (537)
Q Consensus 99 ~~~te~~L~~~F~~~G 114 (537)
.+++++.|+++|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4788999999998865
No 279
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=21.01 E-value=23 Score=38.20 Aligned_cols=68 Identities=19% Similarity=0.069 Sum_probs=50.4
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceE
Q 009354 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFT 246 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~ 246 (537)
..|.||+.|+.+.++-.+|..+++.+-.+..+.+-.+ .......+..|+|+-.-....|+.+||+.-+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 3578999999999999999999999877666655443 2223445778899776666667777777654
No 280
>CHL00030 rpl23 ribosomal protein L23
Probab=20.94 E-value=2.4e+02 Score=23.23 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=26.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeccC
Q 009354 91 KLYVAPVPRTATEEDIRPLFEE-HG-NVIEVVLPKD 124 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d 124 (537)
+-|+=-++.+++..+|++.++. || .|..|..+.-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 4556667899999999999997 66 5777766554
No 281
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.47 E-value=2.4e+02 Score=23.05 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=25.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeccC
Q 009354 91 KLYVAPVPRTATEEDIRPLFEE-HG-NVIEVVLPKD 124 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d 124 (537)
+.|+-.++.+++..+|++.|+. || .|.+|..+.-
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 3555667889999999999996 66 5677765543
No 282
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.35 E-value=3.6e+02 Score=21.83 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCC-CeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcC
Q 009354 194 KKEIEEVFSPYG-HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLN 242 (537)
Q Consensus 194 e~~L~~~F~~~G-~I~~v~i~~d~~g~~~g~afV~F~~~~~A~~Ai~~l~ 242 (537)
.+.+++++++.| +++++.+.. |....+..+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~---G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL---GEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec---CCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 355777777765 588888876 4456678889999998888775554
Done!