BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009355
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
pdb|2BZ0|B Chain B, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
Length = 196
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 126/192 (65%), Gaps = 1/192 (0%)
Query: 319 VERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGS 378
++R A ++LPT WG F + G DHVA+V G++ VL RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 379 ARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIEL 438
RCDCG QL+ A+ I + G+G+++Y R EGR IGL +K+RAY LQDQG+DTV+AN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 439 GLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKR 498
G A D R++ + A + + LGV +RL+TNNP K L G+ ++ RVP++ N+
Sbjct: 122 GFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEH 181
Query: 499 YLETKRTKMGHI 510
YL+TK KMGH+
Sbjct: 182 YLDTKAEKMGHL 193
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii
Length = 196
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 1/192 (0%)
Query: 319 VERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGS 378
++R A ++LPT WG F + G DHVA+V G++ VL RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLXVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 379 ARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIEL 438
RCDCG QL+ A+ I + G+G+++Y R EGR IGL +K+RAY LQDQG+DTV+AN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 439 GLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKR 498
G A D R++ + A + LGV +RL+TNNP K L G+ ++ RVP++ N+
Sbjct: 122 GFAADERDFTLCADXFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEH 181
Query: 499 YLETKRTKMGHI 510
YL+TK K GH+
Sbjct: 182 YLDTKAEKXGHL 193
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional
DhbpsGTP Cyclohydrolase Ii From Mycobacterium
Tuberculosis At Ph 4.0
pdb|3MIO|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
pdb|3MIO|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
Length = 206
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 130/205 (63%), Gaps = 3/205 (1%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKE 172
S+E+A+ + GK VIV++DE+ + EG+L+ AA +P VAFMV++ SG + V +
Sbjct: 4 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDG 63
Query: 173 EDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPEN 232
RL L M A N+D +T+TVDA+ G TG+SASDRA T+ L+ P S ++
Sbjct: 64 AICDRLGLLPMY--AVNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADD 121
Query: 233 FRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPED-GSMSSLPSL 291
F RPGHV PL+ ++GGVLRR GHTEA+VDL +AGL P + +V +D GSM+ L
Sbjct: 122 FTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDEL 181
Query: 292 RKLALEHSIPISSIIDLIRYRRKRE 316
R A EH + + +I DLI +RRK E
Sbjct: 182 RVFADEHGLALITIADLIEWRRKHE 206
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis With
Sulfate And Zinc At Ph 4.00
Length = 212
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 130/205 (63%), Gaps = 3/205 (1%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKE 172
S+E+A+ + GK VIV++DE+ + EG+L+ AA +P VAFMV++ SG + V +
Sbjct: 10 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDG 69
Query: 173 EDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPEN 232
RL L M A N+D +T+TVDA+ G TG+SASDRA T+ L+ P S ++
Sbjct: 70 AICDRLGLLPMY--AVNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADD 127
Query: 233 FRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPED-GSMSSLPSL 291
F RPGHV PL+ ++GGVLRR GHTEA+VDL +AGL P + +V +D GSM+ L
Sbjct: 128 FTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDEL 187
Query: 292 RKLALEHSIPISSIIDLIRYRRKRE 316
R A EH + + +I DLI +RRK E
Sbjct: 188 RVFADEHGLALITIADLIEWRRKHE 212
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LQU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LRJ|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|C Chain C, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|D Chain D, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LS6|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
pdb|3LS6|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
Length = 217
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 133/205 (64%), Gaps = 5/205 (2%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKE 172
F +E AL+ LR+G+ V+V++DE+ + EG+++ A + +A ++HGSGIV + + E
Sbjct: 13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 173 EDLQRLNLPLMSPEAENEDSSAPT-FTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPE 231
+ ++L+LP+M EN S+ T FT+T++A G TTGVSA+DR TV A +KP
Sbjct: 73 DRRKQLDLPMM---VENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPS 129
Query: 232 NFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSL 291
+ RPGHVFPL+ + GGVL R GHTEA++DL+ LAG P VL + + +DG+M+ P
Sbjct: 130 DLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTN-DDGTMARAPEC 188
Query: 292 RKLALEHSIPISSIIDLIRYRRKRE 316
A +H++ + +I DL+ YR+ E
Sbjct: 189 IAFAGQHNMAVVTIEDLVAYRQAHE 213
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 134/205 (65%), Gaps = 5/205 (2%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKE 172
F +E AL LR+G+ V+V++DE+ + EG+++ A + +A ++HGSGIV + + E
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 173 EDLQRLNLPLMSPEAENEDSSAPT-FTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPE 231
+ ++L+LP+M EN S+ T FT+T++A G TTGVSA+DR TV A + +KP
Sbjct: 73 DRRKQLDLPMM---VENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPS 129
Query: 232 NFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSL 291
+ RPGHVFPL+ + GGVL R GHTEA++DL+ LAG P VL + + +DG+M+ P
Sbjct: 130 DLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTN-DDGTMARAPEC 188
Query: 292 RKLALEHSIPISSIIDLIRYRRKRE 316
+ A +H++ + +I DL+ YR+ E
Sbjct: 189 IEFANKHNMALVTIEDLVAYRQAHE 213
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 134/205 (65%), Gaps = 5/205 (2%)
Query: 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKE 172
F +E AL LR+G+ V+V++DE+ + EG+++ A + +A ++HGSGIV + + E
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 173 EDLQRLNLPLMSPEAENEDSSAPT-FTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPE 231
+ ++L+LP+M EN S+ T FT+T++A G TTGVSA+DR TV A + +KP
Sbjct: 73 DRRKQLDLPMM---VENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPS 129
Query: 232 NFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSL 291
+ RPGHVFPL+ + GGVL R GHTEA++DL+ LAG P VL + + +DG+M+ P
Sbjct: 130 DLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTN-DDGTMARAPEC 188
Query: 292 RKLALEHSIPISSIIDLIRYRRKRE 316
+ A +H++ + +I DL+ YR+ E
Sbjct: 189 IEFANKHNMALVTIEDLVAYRQAHE 213
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKS|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|1TKU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|2RIS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans- Alternate Interpretation
pdb|2RIU|A Chain A, Alternative Models For Two Crystal Structures Of Candida
Albicans 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase-
Alternate Interpreation
Length = 204
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 126/205 (61%), Gaps = 2/205 (0%)
Query: 110 TEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVG 169
T F+ IE+AL + G+F+IV++DE+ + EG+L+MAA L + +AF+V++ SG V V
Sbjct: 2 TNIFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVP 61
Query: 170 MKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSK 229
+ EE +L LP M A D +TIT D GTTTG+SA DRA T +L++P+SK
Sbjct: 62 LSEERANQLELPPML--ANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSK 119
Query: 230 PENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLP 289
P++F +PGH+ PL+ G + +R GHTEA+V L LAGL P V+ +V EDG M L
Sbjct: 120 PQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLD 179
Query: 290 SLRKLALEHSIPISSIIDLIRYRRK 314
+ +H I I +I L+ Y K
Sbjct: 180 DCIQFGKKHGIKIININQLVEYISK 204
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
pdb|3H07|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
Length = 220
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 130/200 (65%), Gaps = 3/200 (1%)
Query: 116 IEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDL 175
+E+A++ LR G+ V+V++DE+ + EG++V AA + +A ++HGSGIV + + +E
Sbjct: 19 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERR 78
Query: 176 QRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRR 235
Q+L+LP+M ++ +A FT+T++A G TTGVSA+DR T+ + ++KP + R
Sbjct: 79 QQLDLPMMVTHNSSQFQTA--FTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNR 136
Query: 236 PGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLA 295
PGHVFPL+ + GGVL R GHTEAS+DL LAG P VL + + +DGSM+ P + A
Sbjct: 137 PGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTN-DDGSMAHAPEVIAFA 195
Query: 296 LEHSIPISSIIDLIRYRRKR 315
H +P+ +I DL Y + R
Sbjct: 196 KLHDMPVVTIDDLAAYLQSR 215
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 13/223 (5%)
Query: 109 PTEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSV 168
P F +I + + G+FV+V++D + + E +L++AA + +AFMV+H SG++
Sbjct: 8 PKSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICA 67
Query: 169 GMKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKF-GTTTGVSASDRAKTVLALSSPD 227
+ E L+LP M N D +T++VDA+ TTTG+SA DRA L++PD
Sbjct: 68 PLTPERTTALDLPQMV--THNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPD 125
Query: 228 SKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDP----EDG 283
++P +FRRPGHVFPL+ GGV R GHTEA V+L LAG PV+V+S +VD E
Sbjct: 126 AQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGR 185
Query: 284 SMSSLPSLRK------LALEHSIPISSIIDLIRYRRKRETIVE 320
++ + P + + A + + +I D+I + K E +E
Sbjct: 186 AVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLE 228
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 112/223 (50%), Gaps = 30/223 (13%)
Query: 114 SSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEE 173
+++E+A+ L++G+ ++V + + + E ++V+A+ +P H+ M K G++ + +
Sbjct: 2 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPD 61
Query: 174 DLQRLNLPLMSPEAE-------------------NEDSSAPTFTITVDAKFGTTTGVSAS 214
+L +P M E +E SS F+IT++ + T TG++ +
Sbjct: 62 ICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSS---FSITINHR-KTFTGITDN 117
Query: 215 DRAKTVLALSSP------DSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGL 268
DRA T+ L+ + + FR PGHV L+ G V R GHTE +V L LA L
Sbjct: 118 DRAFTIKKLAELVKEGRFNDFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTVALAELANL 177
Query: 269 NPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRY 311
P++ + ++ +DG+ S ++ A +H++ S ++I Y
Sbjct: 178 VPITTICEMMG-DDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 30/223 (13%)
Query: 114 SSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEE 173
+++E+A+ L++G+ ++V + + + E ++V+A+ +P H+ M K G++ + +
Sbjct: 2 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPD 61
Query: 174 DLQRLNLPLMSPEAE-------------------NEDSSAPTFTITVDAKFGTTTGVSAS 214
+L +P M E +E SS F+IT++ + T TG++ +
Sbjct: 62 ICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSS---FSITINHR-KTFTGITDN 117
Query: 215 DRAKTVLALSSP------DSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGL 268
DRA T+ L+ + + FR PG V L+ G V R GHTE +V L LA L
Sbjct: 118 DRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANL 177
Query: 269 NPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRY 311
P++ + ++ +DG+ S ++ A +H++ S ++I Y
Sbjct: 178 VPITTICEMMG-DDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 117 EQALNTLRQGKFVIVV-EDENGD-VEGNLVMAASLTSP---RHVAFMVKHGSGIVSVGMK 171
E +L TLR GK +I+ +D++G ++G L+ P RH F+ + + IV V
Sbjct: 95 EDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRH-RFLEEFITPIVKVSKN 153
Query: 172 EEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLA 222
++++ +L PE E SS P K+ G S S AK A
Sbjct: 154 KQEMAFYSL----PEFEEWKSSTPNHK-KWKVKYYKGLGTSTSKEAKEYFA 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,668,733
Number of Sequences: 62578
Number of extensions: 737560
Number of successful extensions: 1599
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 15
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)