Query 009355
Match_columns 537
No_of_seqs 212 out of 1552
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 12:06:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02831 Bifunctional GTP cycl 100.0 2E-140 3E-145 1119.3 45.3 443 79-521 1-443 (450)
2 PRK09319 bifunctional 3,4-dihy 100.0 1E-133 3E-138 1079.2 41.3 399 113-515 5-407 (555)
3 PRK09311 bifunctional 3,4-dihy 100.0 1E-131 3E-136 1041.5 42.2 398 112-512 3-400 (402)
4 PRK09318 bifunctional 3,4-dihy 100.0 1E-130 3E-135 1026.8 37.2 382 116-513 1-382 (387)
5 PRK12485 bifunctional 3,4-dihy 100.0 8E-121 2E-125 949.2 38.7 366 112-489 2-368 (369)
6 PRK14019 bifunctional 3,4-dihy 100.0 2E-117 3E-122 925.0 38.7 364 112-489 2-365 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 3E-115 6E-120 896.5 35.5 337 112-488 2-339 (339)
8 PRK08815 GTP cyclohydrolase; P 100.0 1E-107 3E-112 851.8 34.7 350 112-513 16-367 (375)
9 COG0108 RibB 3,4-dihydroxy-2-b 100.0 5.6E-78 1.2E-82 577.8 22.1 201 112-316 2-202 (203)
10 PRK00910 ribB 3,4-dihydroxy-2- 100.0 3.7E-75 8E-80 567.9 22.7 202 112-316 13-214 (218)
11 PRK01792 ribB 3,4-dihydroxy-2- 100.0 1.9E-74 4.1E-79 561.5 23.2 201 112-315 12-212 (214)
12 PRK00014 ribB 3,4-dihydroxy-2- 100.0 9.1E-73 2E-77 553.6 23.3 200 114-316 19-218 (230)
13 TIGR00506 ribB 3,4-dihydroxy-2 100.0 2.6E-72 5.6E-77 542.6 22.2 197 113-312 2-199 (199)
14 KOG1284 Bifunctional GTP cyclo 100.0 4E-73 8.6E-78 575.6 14.4 339 67-405 16-357 (357)
15 PF00926 DHBP_synthase: 3,4-di 100.0 1.7E-72 3.6E-77 542.4 17.1 194 116-312 1-194 (194)
16 PRK03353 ribB 3,4-dihydroxy-2- 100.0 3.6E-68 7.8E-73 520.3 23.0 202 112-316 12-213 (217)
17 PRK05773 3,4-dihydroxy-2-butan 100.0 1.4E-67 3.1E-72 515.5 20.9 193 115-312 2-217 (219)
18 COG0807 RibA GTP cyclohydrolas 100.0 6.7E-67 1.5E-71 501.8 18.1 192 318-511 2-193 (193)
19 PRK00393 ribA GTP cyclohydrola 100.0 1.7E-58 3.8E-63 446.1 18.2 195 318-513 2-196 (197)
20 TIGR00505 ribA GTP cyclohydrol 100.0 9E-58 1.9E-62 439.1 18.0 191 320-511 1-191 (191)
21 PF00925 GTP_cyclohydro2: GTP 100.0 4.6E-57 9.9E-62 426.6 12.7 169 319-488 1-169 (169)
22 cd00641 GTP_cyclohydro2 GTP cy 100.0 8.4E-55 1.8E-59 418.8 17.8 193 318-511 1-193 (193)
23 PRK07198 hypothetical protein; 100.0 2.8E-40 6.1E-45 343.1 13.2 167 335-505 211-394 (418)
24 KOG1284 Bifunctional GTP cyclo 99.6 2.6E-16 5.6E-21 161.6 1.4 161 357-521 154-329 (357)
25 KOG3009 Predicted carbohydrate 83.7 3.3 7.1E-05 46.1 7.3 159 117-306 30-204 (614)
26 TIGR02361 dak_ATP dihydroxyace 77.5 6.5 0.00014 44.9 7.4 88 337-460 33-125 (574)
27 PRK14481 dihydroxyacetone kina 74.5 13 0.00027 39.9 8.2 88 337-461 35-127 (331)
28 PRK11468 dihydroxyacetone kina 72.6 13 0.00028 40.2 7.8 89 337-461 34-127 (356)
29 TIGR02363 dhaK1 dihydroxyaceto 70.6 13 0.00028 39.8 7.1 89 337-461 35-128 (329)
30 PF02733 Dak1: Dak1 domain; I 68.8 5.2 0.00011 42.6 3.8 86 338-460 20-110 (325)
31 PRK14479 dihydroxyacetone kina 66.9 15 0.00033 41.9 7.2 87 337-460 34-125 (568)
32 PRK14483 DhaKLM operon coactiv 62.2 24 0.00052 37.8 7.1 88 337-461 34-126 (329)
33 TIGR02362 dhaK1b probable dihy 59.0 33 0.00072 36.7 7.6 88 337-461 32-124 (326)
34 PTZ00375 dihydroxyacetone kina 58.6 26 0.00056 40.3 7.1 87 337-460 37-128 (584)
35 PF06794 UPF0270: Uncharacteri 57.5 4 8.7E-05 34.4 0.4 22 115-136 38-59 (70)
36 PF13420 Acetyltransf_4: Acety 43.8 48 0.001 29.5 5.2 36 452-487 103-141 (155)
37 PF13263 PHP_C: PHP-associated 43.8 20 0.00043 28.2 2.3 20 289-308 5-24 (56)
38 PRK04966 hypothetical protein; 41.6 30 0.00065 29.4 3.2 22 115-136 38-59 (72)
39 PRK00304 hypothetical protein; 39.2 33 0.00071 29.4 3.1 21 115-135 37-57 (75)
40 PRK08296 hypothetical protein; 38.7 28 0.00061 40.2 3.4 83 125-208 511-599 (603)
41 KOG2426 Dihydroxyacetone kinas 36.6 1.8E+02 0.0039 33.1 8.9 98 331-465 31-133 (582)
42 PLN02880 tyrosine decarboxylas 35.1 76 0.0016 35.4 6.0 53 250-302 220-272 (490)
43 COG1560 HtrB Lauroyl/myristoyl 33.9 93 0.002 33.0 6.1 92 114-225 182-276 (308)
44 KOG1145 Mitochondrial translat 33.6 68 0.0015 37.0 5.3 50 253-304 209-258 (683)
45 PRK05878 pyruvate phosphate di 33.6 2.1E+02 0.0045 32.7 9.2 83 143-226 382-478 (530)
46 COG3473 Maleate cis-trans isom 30.4 51 0.0011 33.6 3.3 58 449-506 108-176 (238)
47 PF00332 Glyco_hydro_17: Glyco 30.3 42 0.00091 35.4 2.9 39 449-487 17-55 (310)
48 PLN02590 probable tyrosine dec 29.2 1.1E+02 0.0024 34.8 6.2 52 251-302 269-320 (539)
49 TIGR02990 ectoine_eutA ectoine 26.6 2E+02 0.0042 29.4 6.8 92 386-490 58-156 (239)
50 COG1926 Predicted phosphoribos 25.9 1.6E+02 0.0034 30.1 5.8 58 116-173 106-185 (220)
51 PRK06354 pyruvate kinase; Prov 25.0 1.1E+02 0.0024 35.3 5.2 82 125-207 494-581 (590)
52 PF08369 PCP_red: Proto-chloro 23.9 95 0.0021 23.8 3.1 23 288-310 21-43 (45)
53 COG0532 InfB Translation initi 23.6 1.3E+02 0.0029 34.2 5.4 50 252-305 62-113 (509)
54 COG0223 Fmt Methionyl-tRNA for 23.0 1.1E+02 0.0024 32.6 4.4 134 258-395 13-173 (307)
55 PF04472 DUF552: Protein of un 22.6 84 0.0018 25.9 2.8 20 112-131 8-27 (73)
56 PF00107 ADH_zinc_N: Zinc-bind 22.3 46 0.001 28.9 1.3 32 449-481 5-36 (130)
57 cd03109 DTBS Dethiobiotin synt 22.2 2.1E+02 0.0045 26.0 5.6 51 253-305 82-132 (134)
58 cd06450 DOPA_deC_like DOPA dec 21.8 2.2E+02 0.0048 28.9 6.3 47 257-303 136-182 (345)
59 COG3089 Uncharacterized protei 20.6 1E+02 0.0022 26.1 2.8 20 115-134 38-57 (72)
60 PRK06464 phosphoenolpyruvate s 20.2 1.2E+02 0.0025 36.3 4.3 115 140-275 385-508 (795)
No 1
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=1.5e-140 Score=1119.27 Aligned_cols=443 Identities=78% Similarity=1.233 Sum_probs=433.2
Q ss_pred CCCCccccccccCcccccccccCCCCCCCCCCCCCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHH
Q 009355 79 VSAPFGTVDAEITPETIDFFVSDAEGDPDCPTEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFM 158 (537)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm 158 (537)
++++||||+++|+|++++||.++.+.+++.+++.|++|++||++||+|+||||+||++||||||||+|||.+|+|.||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm 80 (450)
T PLN02831 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL 80 (450)
T ss_pred CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence 47899999999999999999999999999997789999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCC
Q 009355 159 VKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGH 238 (537)
Q Consensus 159 ~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGH 238 (537)
++|++|+||+||++++|++|+||+|++...|.+..+++|||||||++|++|||||.|||+|||+||+|.++|+||++|||
T Consensus 81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGH 160 (450)
T PLN02831 81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGH 160 (450)
T ss_pred HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCc
Confidence 99999999999999999999999999865577778899999999999999999999999999999999999999999999
Q ss_pred CccceeccCCccccCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhccch
Q 009355 239 VFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETI 318 (537)
Q Consensus 239 VfPL~a~~GGvl~R~GhTEAaVdLarlAGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E~l 318 (537)
||||++++|||++|+|||||||||||||||.|+|||||||+++||+||+.+++++||++|+||+++|+|||+||+++|++
T Consensus 161 vfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~l 240 (450)
T PLN02831 161 IFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240 (450)
T ss_pred ccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999558999999999999999999999999999999999999
Q ss_pred hhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHcC
Q 009355 319 VERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAG 398 (537)
Q Consensus 319 Ver~a~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G 398 (537)
|+++++.+|||.||.|++++|++..++.||+|||+|++..++||||||||+|+|||+|||.+|||+|||+.||++|+++|
T Consensus 241 V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G 320 (450)
T PLN02831 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAG 320 (450)
T ss_pred ccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEeCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccC
Q 009355 399 KGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGY 478 (537)
Q Consensus 399 ~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~ 478 (537)
+|||||||+|||||+||.+|+++|.+|++|+||++||.++|++.|.|+||+|||||++|||++||||||||.|+.+|++|
T Consensus 321 ~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~dLGI~~irLLTNNp~K~~~L~~~ 400 (450)
T PLN02831 321 RGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGY 400 (450)
T ss_pred CEEEEEEcCCCcccchHHHHHHHHhcccccCcchhhhhhccCcccceehHHHHHHHHHcCCCEEEECCCCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeecCCCCChhHHHHHHHHhhhcCCccCCCCCCCccC
Q 009355 479 GLAVIGRVPILTPITEENKRYLETKRTKMGHIYGSDLQGPLFG 521 (537)
Q Consensus 479 GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~~~~~~~~~~~ 521 (537)
||+|++++|++++++++|++||+||++||||++..++.|++++
T Consensus 401 GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~~~~~~~ 443 (450)
T PLN02831 401 GLAVVGRVPLLTPITKENKRYLETKRTKMGHVYGSDLGGHVSG 443 (450)
T ss_pred CCEEEEEecccCCCChhhHHHHHHHHHHhCCcCCCCCCCcccc
Confidence 9999999999999999999999999999999999999998875
No 2
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=1.5e-133 Score=1079.17 Aligned_cols=399 Identities=53% Similarity=0.929 Sum_probs=390.5
Q ss_pred CccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCC
Q 009355 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDS 192 (537)
Q Consensus 113 ~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~ 192 (537)
|++|++||++||+|+||||+||++||||||||+|||++|++.||||++|++|+||+||++++|++|+||+|++. |++.
T Consensus 5 ~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~~ 82 (555)
T PRK09319 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTDS 82 (555)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999987 8888
Q ss_pred CCCceEEeeecc--CCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCC
Q 009355 193 SAPTFTITVDAK--FGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNP 270 (537)
Q Consensus 193 ~~taFtVsVDa~--~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~P 270 (537)
+.++|||||||+ .|++|||||+|||+|||+||+|.++|.||++|||||||++++|||++|+|||||||||||||||.|
T Consensus 83 ~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~P 162 (555)
T PRK09319 83 NQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYP 162 (555)
T ss_pred CCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCCc
Confidence 889999999987 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEE
Q 009355 271 VSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVA 350 (537)
Q Consensus 271 aaVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E~lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlA 350 (537)
+||||||+++ ||+||+++++++||++|+||+|+|+|||+||+++|++|+++++++|||.||.|++++|++..++.||+|
T Consensus 163 aaVicEi~~~-dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvA 241 (555)
T PRK09319 163 AGVICEIQNP-DGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVA 241 (555)
T ss_pred eEEEEEEecC-CCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEE
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC--CCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhhhcccC
Q 009355 351 VVKGNMGN--GQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQG 428 (537)
Q Consensus 351 Lv~Gdi~~--~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G 428 (537)
||+|++.. ++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||| ||||||||.+|+++|+||++|
T Consensus 242 LvkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGiGL~nKl~aY~LQd~G 320 (555)
T PRK09319 242 LVKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDGG 320 (555)
T ss_pred EEcCCcccccCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeC-CCCcchhHHHHHHHHhhhhcC
Confidence 99999963 479999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CcchhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecCCCCChhHHHHHHHHhhhcC
Q 009355 429 HDTVQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKRYLETKRTKMG 508 (537)
Q Consensus 429 ~DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~g 508 (537)
+||++||..+|++.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+||++|||
T Consensus 321 ~DTveAn~~lG~~~D~RdYgigAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~n~~YL~tK~~k~g 400 (555)
T PRK09319 321 LDTVEANERLGFPADLRNYGVGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEKLG 400 (555)
T ss_pred CChhhhhhhcCCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcchhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCC
Q 009355 509 HIYGSDL 515 (537)
Q Consensus 509 H~~~~~~ 515 (537)
|++....
T Consensus 401 H~l~~~~ 407 (555)
T PRK09319 401 HLLLQTY 407 (555)
T ss_pred CccCCCc
Confidence 9998643
No 3
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.3e-131 Score=1041.53 Aligned_cols=398 Identities=59% Similarity=0.977 Sum_probs=391.5
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009355 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (537)
.|++|++||++||+|+||||+||++||||||||+|||.+|+|.|+||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 3 ~~~~v~~ai~~lr~G~~Vvl~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~--~~~ 80 (402)
T PRK09311 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH--NQD 80 (402)
T ss_pred ccchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCccccc--CCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999987 778
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
.++|+||||||++.|++|||||.|||+|||+||+|+++|+||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 81 ~~~t~ftvsvd~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Pa 160 (402)
T PRK09311 81 SHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPA 160 (402)
T ss_pred CCCCceEEEEEccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 88999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEE
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAV 351 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E~lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlAL 351 (537)
|||||||++ ||+||+++++++||++|+||+++++|||+||+++|.+|+++++.+|||.||.|++++|++..++.||+||
T Consensus 161 avi~ei~~~-~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~AL 239 (402)
T PRK09311 161 GVICEIVNE-DGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVAL 239 (402)
T ss_pred EEEEEEecC-CCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEE
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhhhcccCCcc
Q 009355 352 VKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDT 431 (537)
Q Consensus 352 v~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DT 431 (537)
|+|++..++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||++|||||+||.+|+++|.+|++|+||
T Consensus 240 v~Gd~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qegrg~gl~~Kl~ay~lq~~g~dt 319 (402)
T PRK09311 240 VKGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGYDT 319 (402)
T ss_pred EeCCCCCCCceeEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCCcccchHHHHHHHHhhhhcCCCh
Confidence 99999988999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred hhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecCCCCChhHHHHHHHHhhhcCCcc
Q 009355 432 VQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKRYLETKRTKMGHIY 511 (537)
Q Consensus 432 veAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~ 511 (537)
++||..+|++.|.|+||+|||||++|||++||||||||.|+.+|++|||+|++++|++++++++|++||+||++||||+|
T Consensus 320 ~~an~~lg~~~D~Rdyg~gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~~~~~~~~~n~~yl~tK~~~~gH~l 399 (402)
T PRK09311 320 VDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPLPVRANEENERYLRTKRDRMGHDL 399 (402)
T ss_pred hhhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEeccCCCCChhhHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 009355 512 G 512 (537)
Q Consensus 512 ~ 512 (537)
.
T Consensus 400 ~ 400 (402)
T PRK09311 400 D 400 (402)
T ss_pred C
Confidence 6
No 4
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.4e-130 Score=1026.75 Aligned_cols=382 Identities=40% Similarity=0.662 Sum_probs=368.9
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCCCC
Q 009355 116 IEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSSAP 195 (537)
Q Consensus 116 I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~~t 195 (537)
+++||++||+|+||||+|| +||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+.. . .+|
T Consensus 1 ~~~ai~al~~G~~viv~D~-~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~~---~--~~~ 74 (387)
T PRK09318 1 MEELREAFLEGKPVILIDR-NRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPSN---G--GET 74 (387)
T ss_pred CHHHHHHHHCCCeEEEEeC-CCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccCC---C--CCC
Confidence 3689999999999999998 899999999999999999999999999999999999999999999999843 2 458
Q ss_pred ceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCeEEEE
Q 009355 196 TFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLS 275 (537)
Q Consensus 196 aFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~PaaVi~ 275 (537)
+|||||||+ ++|||||+|||+|||+||+ .++|.||+||||||||.+. ||++|+||||||||||+|||+.|+||||
T Consensus 75 aftvsvd~~--~~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vic 149 (387)
T PRK09318 75 NFFIPVDYG--TGTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIV 149 (387)
T ss_pred CEEEEEcCC--CCCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEE
Confidence 999999996 3599999999999999999 6789999999999999875 7999999999999999999999999999
Q ss_pred EecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEEEEcc
Q 009355 276 AVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGN 355 (537)
Q Consensus 276 elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E~lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gd 355 (537)
|||++ ||+||+++++++||++|+||+++|+|||+||+++|++|+++++++|||.||.|++++|++..++.||+|||+|+
T Consensus 150 ei~~~-dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~g~ 228 (387)
T PRK09318 150 EILDE-KGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKEP 228 (387)
T ss_pred EEecC-CCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEeCC
Confidence 99998 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhhhcccCCcchhhh
Q 009355 356 MGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQAN 435 (537)
Q Consensus 356 i~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DTveAn 435 (537)
+. +||||||||+|+|||+|||.+|||++||+.||++|+++| ||||||+ |||||+||.+|+++|.+|++|+||++||
T Consensus 229 ~~--~~vLVRVHSec~tgDvfgs~~CdCg~qL~~Al~~Ia~eG-GvlvYLr-qegrgigl~~Kl~ay~lq~~g~dt~eAn 304 (387)
T PRK09318 229 LG--EVPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKAYELQDKGLDTVEAN 304 (387)
T ss_pred CC--CCceEEEeecccHHHHhcCCCCCCcchHHHHHHHHHHcC-CEEEEEC-CCCcchhHHHHHHHHhhhhcCCCchhhh
Confidence 85 489999999999999999999999999999999999999 9999998 9999999999999999999999999999
Q ss_pred hhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecCCCCChhHHHHHHHHhhhcCCccCC
Q 009355 436 IELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKRYLETKRTKMGHIYGS 513 (537)
Q Consensus 436 ~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~~~ 513 (537)
..+|++.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|++++++++|++||+||++||||+|..
T Consensus 305 ~~lg~~~D~RdygigAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl~~~~~~~n~~Yl~tK~~k~gH~l~~ 382 (387)
T PRK09318 305 RALGFKEDERDYAAAFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPLYGEVTKYNRFYLKTKVEKLGHKLEL 382 (387)
T ss_pred hhcCCCccceeeeHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhHHHHHHHHHhhCCCcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999963
No 5
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=7.5e-121 Score=949.18 Aligned_cols=366 Identities=39% Similarity=0.650 Sum_probs=349.8
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009355 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (537)
.|++|++||++|++|+||||+||++||||||||+||+.+|||.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~viv~Dd~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~--~~~ 79 (369)
T PRK12485 2 AFNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS--NGS 79 (369)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCccccc--CCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
..+|+|||||||+.|++|||||.|||+|||+||+|+++|.||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~~~~ftvsvda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~ 159 (369)
T PRK12485 80 VFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPA 159 (369)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEE
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAV 351 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E~lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlAL 351 (537)
+||||||++ ||+||+++++.+||++|+||+++|+|||+||+++|.+|+++++++|||.||.|++++|++..++.||+||
T Consensus 160 avi~ei~~~-dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvAL 238 (369)
T PRK12485 160 SVIVEVMND-DGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAM 238 (369)
T ss_pred EEEEEEecC-CCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEE
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcceEEEcccCcccccccCCCC-CChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhhhcccCCc
Q 009355 352 VKGNMGNGQDVLVRVHSECLTGDIFGSARC-DCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHD 430 (537)
Q Consensus 352 v~Gdi~~~~~vLVRVHSeCltgDvfgS~~C-DCg~qL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~D 430 (537)
++|++..++||||||||+|+|||+|||.+| ||+|||+.||++|+++|+|||||||+|+ +++||.+|+++|..|+.+++
T Consensus 239 v~G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~-~~~gl~~kl~a~~~~~~~~~ 317 (369)
T PRK12485 239 VMGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHE-SSQALLERIPQLTQPPRQYQ 317 (369)
T ss_pred EeCCCCCCCCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCC-chhhHHHHHHHHHhHhhCCC
Confidence 999998889999999999999999999865 9999999999999999999999999555 56999999999987766665
Q ss_pred chhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecC
Q 009355 431 TVQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPIL 489 (537)
Q Consensus 431 TveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~ 489 (537)
..+ ..|.|+||+||||||+|||+||||| |||.|+.+|++|||+|++++|+.
T Consensus 318 ~~d-------~r~~r~ygigAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~vp~~ 368 (369)
T PRK12485 318 RSQ-------SRIYSEVGTGAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPFP 368 (369)
T ss_pred ccc-------chhhhhhhHHHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEecCC
Confidence 321 2357799999999999999999999 77999999999999999999975
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.6e-117 Score=925.04 Aligned_cols=364 Identities=44% Similarity=0.715 Sum_probs=354.7
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009355 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (537)
.|++|++||++||+|+||||+||++||||||||+|||.+|+|.|+||++|++|+||+||++++|++|+||+|++. |.+
T Consensus 2 ~~~~i~~Ai~~lr~G~~Viv~D~~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~--~~~ 79 (367)
T PRK14019 2 TLASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR--NGT 79 (367)
T ss_pred CCccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCccccc--CCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999986 778
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
.++++||||||+++|++|||||.|||+||+.||+++++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 80 ~~~~~ftvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Pa 159 (367)
T PRK14019 80 QYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPA 159 (367)
T ss_pred cCCCceEEEEEcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCce
Confidence 88899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEE
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAV 351 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E~lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlAL 351 (537)
+|+|||+++ +|+||+.+++++||++|+||+|+++|||+||++++++|++++++++||+||+|++++|++..++.||+||
T Consensus 160 avi~ei~~~-~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Al 238 (367)
T PRK14019 160 AVICEIMKD-DGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLAL 238 (367)
T ss_pred EEEEEEecC-CCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEE
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhhhcccCCcc
Q 009355 352 VKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDT 431 (537)
Q Consensus 352 v~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DT 431 (537)
++|++..++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||+ ||||||||.+|+++|
T Consensus 239 v~Gd~~~~~~vlVRvHS~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~-qegrgigl~~k~~~~--------- 308 (367)
T PRK14019 239 VKGTICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLN-CGDDGEHLLDRFRAE--------- 308 (367)
T ss_pred EeCCcCCCCceeEEEeeccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEc-cCCchhhHHHhhhhh---------
Confidence 9999988899999999999999999999999999999999999999999999998 999999999999863
Q ss_pred hhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecC
Q 009355 432 VQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPIL 489 (537)
Q Consensus 432 veAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~ 489 (537)
+++|..+|++.|.|+||+||||||+|||++||||| ||.|+++|++|||+|++++|+.
T Consensus 309 ~~an~~lg~~~d~R~y~igaqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~~~ 365 (367)
T PRK14019 309 EAAAALKRRPVDYRTYGIGAQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVPMP 365 (367)
T ss_pred hhhhhhcCCCcccceehHHHHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEecCC
Confidence 46899999999999999999999999999999999 6999999999999999999975
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=2.9e-115 Score=896.52 Aligned_cols=337 Identities=34% Similarity=0.624 Sum_probs=323.7
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009355 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (537)
.|++|++||++||+|+||||+||++||||||||+||+++|||.||||+||++|+||+||++++|++|+||+|++. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~--n~~ 79 (339)
T PRK09314 2 PIKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSK--NTS 79 (339)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
.++|+|||||||+ +++|||||+|||+|||+||+|+++|+||++|||||||++++|||++|+||||||||||+|||+.|+
T Consensus 80 ~~~taFtvsVda~-~~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~ 158 (339)
T PRK09314 80 NHETAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPV 158 (339)
T ss_pred CCCCCeEEEEecC-CCCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCce
Confidence 8899999999998 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEE
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAV 351 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E~lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlAL 351 (537)
|||||||++ ||+||+++++++||++|+||++||+|||+||+++|++|+++++.+|||.||+|++++|++. ++.||+||
T Consensus 159 ~vicEil~~-dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlAL 236 (339)
T PRK09314 159 AVICEIMKE-DGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAF 236 (339)
T ss_pred EEEEEEecC-CCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEE
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999988 89999999
Q ss_pred EEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhhhcccCCcc
Q 009355 352 VKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDT 431 (537)
Q Consensus 352 v~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DT 431 (537)
|+|++.. +|||||||+|+|||+|++. |.+||+.||++|+++| ||||||| ||||+
T Consensus 237 v~G~~~~--~vlVRVHSec~tgd~l~~~---~~~qL~~Al~~I~~eG-GvlvYLr-qegr~------------------- 290 (339)
T PRK09314 237 KFGEIKL--TPNVKFHKIGSDFELLTSD---KFSELLKAIEYLKKNG-GVLIFLN-TESKE------------------- 290 (339)
T ss_pred EeCCCCC--CccEEEeccCChHHhhCCC---cHHHHHHHHHHHHHcC-CEEEEEc-CCCCC-------------------
Confidence 9999964 8999999999999999854 4599999999999999 9999999 99874
Q ss_pred hhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCC-cccccccccCCcEEEEEeec
Q 009355 432 VQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNN-PAKFIGLKGYGLAVIGRVPI 488 (537)
Q Consensus 432 veAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNN-P~K~~aL~g~GIeV~ervpl 488 (537)
+| +.|+||+|||||++|||++||||||| |+|+.+|++|||+|++++.+
T Consensus 291 --an-------~~RdygigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~e~v~~ 339 (339)
T PRK09314 291 --NN-------QVKDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIVETIEL 339 (339)
T ss_pred --cc-------cccchhHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEEEEEeC
Confidence 12 48999999999999999999999999 99999999999999999864
No 8
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=1.3e-107 Score=851.84 Aligned_cols=350 Identities=31% Similarity=0.478 Sum_probs=331.1
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009355 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (537)
++.+|++||++||+|+||||+||++|| |||+|||.+||+.||||++|++|++|++|++++|++|+||+|.
T Consensus 16 ~~~~ie~Ai~~lr~G~~Viv~Dde~Re---dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~------- 85 (375)
T PRK08815 16 AAIRCERAAAELRAGRPVLLTDAQGQR---RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ------- 85 (375)
T ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCCe---EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc-------
Confidence 467899999999999999999999996 9999999999999999999999999999999999999999992
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
.||++|. || +.|||+||+.++++ .|.||++|||||| ||||||||||||.|+
T Consensus 86 ----~~t~~is-------~i-d~dRa~Ti~~~~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Pa 136 (375)
T PRK08815 86 ----GARVALP-------DV-DYDRLAALAYLRDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPA 136 (375)
T ss_pred ----CcEEeEe-------cc-hHHHHHHHHHHhcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCce
Confidence 1333332 33 37999999999999 6899999999997 999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHh-hccchhhccccccccCCc-eeEEEEEEEeCCCCceEE
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRR-KRETIVERTAISRLPTKW-GLFQAYCYRSKLDGTDHV 349 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~-~~E~lVer~a~~~LpT~~-G~F~~~~Yr~~~dg~EHl 349 (537)
||||||+++ ++ + +|| +||++||+|||+||. ++|++|++++++++||.| |+|++++|++..++.+|+
T Consensus 137 avi~Ei~~~-~~--~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~ 204 (375)
T PRK08815 137 MVAVPLPVH-DE--A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQV 204 (375)
T ss_pred EEEEEEccC-CC--h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEE
Confidence 999999997 32 2 777 999999999999998 889999999999999995 999999999999999999
Q ss_pred EEEEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchhhhhhhhhhcccCC
Q 009355 350 AVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGH 429 (537)
Q Consensus 350 ALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~ 429 (537)
|||+|++..++||||||||+|+|||+|||.+|||+|||+.||++|+++|+||||||+ |||||+|+.+|+++|.+|++|+
T Consensus 205 ALv~G~~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL~-qegrg~gl~~kl~ay~lq~~g~ 283 (375)
T PRK08815 205 AIVVGQPDLSSAVPVRVHSSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYLD-QEGRGNGIAAKMRAYGYQHAGL 283 (375)
T ss_pred EEEeCCCCCCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEEc-CCCccchHHHHHHHHhhhhccC
Confidence 999999988899999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred cchhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEeecCCCCChhHHHHHHHHhhhcCC
Q 009355 430 DTVQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVPILTPITEENKRYLETKRTKMGH 509 (537)
Q Consensus 430 DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH 509 (537)
||++||..+|++.|.|+||+|||||++|||++||||||||.|+.+|++|||+|++++|++++.+++|++||+||++||||
T Consensus 284 dt~~a~~~lg~~~D~RdygigAQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~~~~~~~~n~~yl~tK~~~~gh 363 (375)
T PRK08815 284 DTIDADAQLGFGPDERRYGSAVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRITAENERYLRTKADRAGH 363 (375)
T ss_pred CchhhhhhcCCCccceeeeHHHHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhhhHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 009355 510 IYGS 513 (537)
Q Consensus 510 ~~~~ 513 (537)
+++.
T Consensus 364 ~l~~ 367 (375)
T PRK08815 364 ALDV 367 (375)
T ss_pred CcCc
Confidence 9963
No 9
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.6e-78 Score=577.85 Aligned_cols=201 Identities=51% Similarity=0.873 Sum_probs=197.1
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009355 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (537)
.+.+|++||+|||+|+||||+||++||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~--n~~ 79 (203)
T COG0108 2 MFERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDN--NTD 79 (203)
T ss_pred chhhHHHHHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCcccccc--CCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999998 888
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
.++|+|||||||++ |+|||||.|||.|||.|+++++.|+||+||||||||+|++||||+|+|||||+|||||||||.|+
T Consensus 80 ~~~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa 158 (203)
T COG0108 80 AHGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPA 158 (203)
T ss_pred CCCCceEEEEeccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCc
Confidence 99999999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhcc
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E 316 (537)
+||||||++ ||+||+.+++++||++||||+++|+|||+||+++|
T Consensus 159 ~VicEi~~~-dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e 202 (203)
T COG0108 159 GVICEIMND-DGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHE 202 (203)
T ss_pred EEEEEEeCC-CccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhc
Confidence 999999998 99999999999999999999999999999998866
No 10
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=3.7e-75 Score=567.85 Aligned_cols=202 Identities=39% Similarity=0.739 Sum_probs=197.4
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009355 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (537)
.|++|++||++||+|+||||+||++||||||||+||+++|+|.||||+||++|+||+||++++|++|+||+|+.. |++
T Consensus 13 ~~~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 90 (218)
T PRK00910 13 PITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVN--NNS 90 (218)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccC--CCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999976 788
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
.++|+||||||+++|++|||||.|||+|||+||+|.++|+||++|||||||++++|||++|+||||||||||+|||+.|+
T Consensus 91 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 170 (218)
T PRK00910 91 ANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPA 170 (218)
T ss_pred CCCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhcc
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E 316 (537)
+||||||++ ||+||+++++++||++|+||+++|+|||+||+++|
T Consensus 171 ~vicEil~~-dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 171 GVLCELTNP-DGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred EEEEEEecC-CCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 999999998 89999999999999999999999999999998877
No 11
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.9e-74 Score=561.51 Aligned_cols=201 Identities=39% Similarity=0.668 Sum_probs=196.1
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009355 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (537)
.+++|++||++|++|+||||+||++||||||||+||+.+|+|.||||+||++|+||+||++++|++|+||+|++. |++
T Consensus 12 ~~~~i~~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 89 (214)
T PRK01792 12 AEERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQH--NTS 89 (214)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCccccc--CCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999987 778
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
.++|+|||||||++|++|||||+|||+|||+||+|.++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 90 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 169 (214)
T PRK01792 90 VNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEA 169 (214)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhc
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKR 315 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~ 315 (537)
+||||||++ ||+||+++++++||++|+||+++|+|||+||+++
T Consensus 170 ~vicEil~~-dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 170 GVICEITND-DGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred EEEEEEecC-CCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 999999998 8999999999999999999999999999999764
No 12
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=9.1e-73 Score=553.63 Aligned_cols=200 Identities=39% Similarity=0.611 Sum_probs=195.4
Q ss_pred ccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCC
Q 009355 114 SSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSS 193 (537)
Q Consensus 114 ~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~ 193 (537)
++|++||++|++|+||||+||++||||||||+||+++|+|.||||+||++|+||+||++++|++|+||+|++. |.+.+
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~--n~~~~ 96 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS--NRSRY 96 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCccccc--CCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999987 88888
Q ss_pred CCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCeEE
Q 009355 194 APTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSV 273 (537)
Q Consensus 194 ~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~PaaV 273 (537)
+++||||||+++|++|||||.|||+|||+||+++++|+||+||||||||++++|||++|+||||||||||+|||+.|++|
T Consensus 97 ~t~ftvSVDa~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~v 176 (230)
T PRK00014 97 STAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGV 176 (230)
T ss_pred CCCeEEEEEcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhcc
Q 009355 274 LSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316 (537)
Q Consensus 274 i~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E 316 (537)
|||||++ ||+||+++++++||++|+||+++|+|||+||+++.
T Consensus 177 icEil~~-dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~~ 218 (230)
T PRK00014 177 LCELMNA-DGTMMRGASLERYAAKEGLVALAIDELAAHLQARG 218 (230)
T ss_pred EEEEeCC-CCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHHh
Confidence 9999998 89999999999999999999999999999997653
No 13
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=2.6e-72 Score=542.57 Aligned_cols=197 Identities=44% Similarity=0.738 Sum_probs=191.1
Q ss_pred CccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCC
Q 009355 113 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDS 192 (537)
Q Consensus 113 ~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~ 192 (537)
|++|++||++||+|+||||+||++||||||||+||+++|+|.||||++|++|+||+||++++|++|+||+|++. |++.
T Consensus 2 ~~~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~--n~~~ 79 (199)
T TIGR00506 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDI--NTSA 79 (199)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccc--cCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999987 8888
Q ss_pred CCCceEEeeeccCC-CccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 193 SAPTFTITVDAKFG-TTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 193 ~~taFtVsVDa~~g-ttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
++++||+|||+.++ ++|||||+|||+|||+|+++.++|+||+||||||||++++|||++|+||||||||||+|||+.|+
T Consensus 80 ~~t~~t~sV~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~ 159 (199)
T TIGR00506 80 SGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPA 159 (199)
T ss_pred CCCceEEEEEeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCce
Confidence 89998888887666 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHH
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYR 312 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr 312 (537)
+||||||++ ||+||+++++++||++|+||+++|+|||+||
T Consensus 160 ~vicEil~~-dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 160 GVICEMMND-DGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred EEEEEEeCC-CCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 999999998 9999999999999999999999999999996
No 14
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4e-73 Score=575.55 Aligned_cols=339 Identities=46% Similarity=0.651 Sum_probs=327.8
Q ss_pred CCCCCccccccCCCCCccccccccCc-ccccccccCCCCCCCCCCCCCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEE
Q 009355 67 ENGSLLGDFDESVSAPFGTVDAEITP-ETIDFFVSDAEGDPDCPTEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVM 145 (537)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~ 145 (537)
.|++.+.....|+..+|+|+.++|.| ..+.|++.|+|++|++|+..|.+|+++|+++|.|++|+|+||++|||||||++
T Consensus 16 ~~~~~~p~~~r~~i~s~~~~~s~~~p~~~d~~~~~d~e~~~~~~~~~~~si~~ri~~~r~gk~~ivldd~~rdneg~L~~ 95 (357)
T KOG1284|consen 16 TNEVSKPLESRPDIDSTYTVNSRIDPFPMDWGAATDEEGGPDRLPRVFCSIPARIPTFRHGKFVIVLDDEDRDNEGDLII 95 (357)
T ss_pred cccccCcccccCccccccccccccCCccccccccccccCCCCCcccceechhhhhhcccCCcEEEEEecccccCCCCcce
Confidence 45556667778999999999999999 77788999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCCCCceEEeeeccCCCccCCChhhHHHHHHHHcC
Q 009355 146 AASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSS 225 (537)
Q Consensus 146 aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAd 225 (537)
+|...+++.++|+++|++|++|+.|..+.+.+|-||+|+....+.+...++|||+||+++|++||||++||+.|++.|++
T Consensus 96 a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~titvd~~~gt~TgVsahde~~T~~~l~s 175 (357)
T KOG1284|consen 96 AAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAFTITVDRAHGTVTGVSAHDEAYTGETLAS 175 (357)
T ss_pred ecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccccccceeEEEehhcCccceeEEecccccchhhcc
Confidence 99999999999999999999999999999999999999997767888999999999999999999999999999999999
Q ss_pred -CCCCCCCccCCCCCccceec-cCCccccCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCEE
Q 009355 226 -PDSKPENFRRPGHVFPLKYR-NGGVLRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPIS 303 (537)
Q Consensus 226 -p~s~p~Df~rPGHVfPL~a~-~GGvl~R~GhTEAaVdLarlAGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~iv 303 (537)
..+.|+||.||||++|++++ +|||++|.|||||+||||.++|+.|+++|||++++++|.|+++++++.||++|++|++
T Consensus 176 ~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~ 255 (357)
T KOG1284|consen 176 ARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLGVLGELVVQADGSMARLPDCRSFAAEHAIPLI 255 (357)
T ss_pred cccCChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchhhhhhhhhcCCcccccCccHhhhhHhhcCChh
Confidence 57789999999999999999 6999999999999999999999999999999999889999999999999999999999
Q ss_pred eehhHHHHHhhccchhhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCcccccccCCCCCC
Q 009355 304 SIIDLIRYRRKRETIVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDC 383 (537)
Q Consensus 304 si~dLi~yr~~~E~lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDC 383 (537)
+++|+|+|+.+|...|+++..+++||+|+.|..+||++..++.||++.++|.+..+..++||+|++|+++|+||+.+|+|
T Consensus 256 ~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~~kie~r~h~e~l~~~i~~~~~~t~ 335 (357)
T KOG1284|consen 256 SIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLGTKIEVRGHLECLPDDIFGNRKRTG 335 (357)
T ss_pred hhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeechhhhheeehhcccchhcCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCEEEEEE
Q 009355 384 GNQLDLAMQIIEKAGKGVVVYL 405 (537)
Q Consensus 384 g~qL~~AL~~I~~~G~GVLVYL 405 (537)
+.||+-+|+.|+++|+|+++||
T Consensus 336 ~sq~~~~~r~~e~~g~~~~~al 357 (357)
T KOG1284|consen 336 GSQLNYFMRTIEAAGRGVFVAL 357 (357)
T ss_pred ccHHHHHHHHHHhhcceeEEeC
Confidence 9999999999999999999997
No 15
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=1.7e-72 Score=542.43 Aligned_cols=194 Identities=54% Similarity=0.895 Sum_probs=180.4
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCCCCCC
Q 009355 116 IEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSSAP 195 (537)
Q Consensus 116 I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~~~~t 195 (537)
|++||++|++|+||||+||++||||||||+||+.+|++.|+||+||++|+||+||++++|++|+||+|++. |++.+++
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~--~~~~~~~ 78 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPD--NTDPHGT 78 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSS--CCTTTS-
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCc--CCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999996 8888899
Q ss_pred ceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCeEEEE
Q 009355 196 TFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLS 275 (537)
Q Consensus 196 aFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~PaaVi~ 275 (537)
+|||||||+.|++|||||+|||+|||+||+++++|+||++|||||||++++|||++|+||||||||||+|||++|++|||
T Consensus 79 ~ftvsVD~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~ 158 (194)
T PF00926_consen 79 AFTVSVDAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVIC 158 (194)
T ss_dssp -BBCEEEESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEE
T ss_pred CeeEeeecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHH
Q 009355 276 AVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYR 312 (537)
Q Consensus 276 elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr 312 (537)
|||++ ||+||+++++++||++|+||+|+|+|||+||
T Consensus 159 eil~~-dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 159 EILDD-DGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp EBBET-TSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred EEeCC-CCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 99998 9999999999999999999999999999997
No 16
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=3.6e-68 Score=520.32 Aligned_cols=202 Identities=43% Similarity=0.755 Sum_probs=197.2
Q ss_pred CCccHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCCC
Q 009355 112 GFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENED 191 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~~ 191 (537)
.+.+|++||++||+|+||||+||++||||||||+|||.+|++.|+||++|++|+||++|++++|++|+||+|++. |.+
T Consensus 12 ~~~~ve~Ai~~Lr~G~pViv~D~~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~--~~~ 89 (217)
T PRK03353 12 PFERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVEN--NTS 89 (217)
T ss_pred hhhHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccc--cCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999987 788
Q ss_pred CCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCe
Q 009355 192 SSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPV 271 (537)
Q Consensus 192 ~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~Pa 271 (537)
..+++||||||++.|++|||||+|||+|||.|+++.++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 90 ~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~ 169 (217)
T PRK03353 90 QYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPA 169 (217)
T ss_pred CCCCceEEEEECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCce
Confidence 88899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHHhhcc
Q 009355 272 SVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYRRKRE 316 (537)
Q Consensus 272 aVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr~~~E 316 (537)
+||||||++ ||+|++.+++++||++|+||+|+++|||+||+++|
T Consensus 170 avi~ei~~~-~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 170 GVLCELTND-DGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEEEeecC-CCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 999999998 89999999999999999999999999999998876
No 17
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=1.4e-67 Score=515.54 Aligned_cols=193 Identities=27% Similarity=0.379 Sum_probs=179.6
Q ss_pred cHHHHHHHHHCCCEEEEEeCCCCCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCC------
Q 009355 115 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAE------ 188 (537)
Q Consensus 115 ~I~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~------ 188 (537)
+|++||++||+|+||||+||++||||||||+||+++|||+||||++|++|+||+||++++|++|+||+|++...
T Consensus 2 ~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~ 81 (219)
T PRK05773 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYR 81 (219)
T ss_pred CHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred ---CCCCC--CCceEEeeeccCCCccCCChhhHHHHHHHHcCC--------CC----CCCCccCCCCCccceeccCCccc
Q 009355 189 ---NEDSS--APTFTITVDAKFGTTTGVSASDRAKTVLALSSP--------DS----KPENFRRPGHVFPLKYRNGGVLR 251 (537)
Q Consensus 189 ---n~~~~--~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp--------~s----~p~Df~rPGHVfPL~a~~GGvl~ 251 (537)
|++.+ +++|||||||+ |++|||||.|||+|||+||++ .+ .|+||++|||||||+++ ||++
T Consensus 82 ~~~~~~~~~~~taFtvsVd~~-~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~ 158 (219)
T PRK05773 82 KLVKKPSYGDEPAFSLWVNHV-KTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRE 158 (219)
T ss_pred cccccCCCCCCceEEEEEcCC-CCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--cccc
Confidence 33444 47999999985 999999999999999999983 22 28999999999999998 8999
Q ss_pred cCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeehhHHHHH
Q 009355 252 RAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSIIDLIRYR 312 (537)
Q Consensus 252 R~GhTEAaVdLarlAGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~dLi~yr 312 (537)
|+||||||||||||||+.|++|||||||+ + .||+++++++||++||||+++|+|||+|.
T Consensus 159 R~GHTEasvdLa~lAGl~P~~vicEil~~-~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 159 RRGHTELSIALAQAAGLEPSAVIAEMLDE-K-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred CCChhHHHHHHHHHcCCCccEEEEEEeCC-C-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 99999999999999999999999999996 4 59999999999999999999999999985
No 18
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=100.00 E-value=6.7e-67 Score=501.83 Aligned_cols=192 Identities=58% Similarity=1.038 Sum_probs=188.7
Q ss_pred hhhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHc
Q 009355 318 IVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKA 397 (537)
Q Consensus 318 lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~ 397 (537)
.++++++++|||.||.|++++|++..++.+|+|+|+|++.. +||||||||||+|||+|+|.+|||++||+.||++|+++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~ 80 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEE 80 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999976 79999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCccccccccc
Q 009355 398 GKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKG 477 (537)
Q Consensus 398 G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g 477 (537)
|+||||||| |||||+||.+|++||+|||.|.||++||.++|++.|+|+||+|||||+||||++||||||||+|+.+|.+
T Consensus 81 g~GVvvYLr-qEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygigAqIL~dLGI~~irLLtnnp~K~~~l~~ 159 (193)
T COG0807 81 GSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEG 159 (193)
T ss_pred CceEEEEee-cCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCChhHHHHHHHHhhhcCCcc
Q 009355 478 YGLAVIGRVPILTPITEENKRYLETKRTKMGHIY 511 (537)
Q Consensus 478 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~ 511 (537)
|||+|++|+|++...+++|+.||+||++||||++
T Consensus 160 ~Gi~vverv~~~~~~~~~n~~yl~tk~~k~gh~~ 193 (193)
T COG0807 160 FGINVVERVPLIVGANPENEFYLKTKKEKMGHLL 193 (193)
T ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999986
No 19
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=100.00 E-value=1.7e-58 Score=446.09 Aligned_cols=195 Identities=49% Similarity=0.847 Sum_probs=188.4
Q ss_pred hhhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHc
Q 009355 318 IVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKA 397 (537)
Q Consensus 318 lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~ 397 (537)
.|++++++++||.||.|++++|++..++.+|+|||+|++.++.|||||||++|.++|+|++.+|||++||+.||++|+++
T Consensus 2 ~v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~ 81 (197)
T PRK00393 2 QLKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCGFQLEAALERIAEE 81 (197)
T ss_pred cEEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCcchHHHHHHHHHHc
Confidence 47899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCccccccccc
Q 009355 398 GKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKG 477 (537)
Q Consensus 398 G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g 477 (537)
|+||||||+ |+|||.|+.+|+++|.+|+.|.|++++|..+|++.|.|+||+|||||++|||++||||||||.|+.+|.|
T Consensus 82 G~GVlVyL~-~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~mrLLtn~~~k~~~L~g 160 (197)
T PRK00393 82 GRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTE 160 (197)
T ss_pred CCEEEEEEc-CCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHh
Confidence 999999998 8999999999999999999888999898888999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCChhHHHHHHHHhhhcCCccCC
Q 009355 478 YGLAVIGRVPILTPITEENKRYLETKRTKMGHIYGS 513 (537)
Q Consensus 478 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~~~ 513 (537)
|||+|++++|++++.+++|++||.||++||||.+..
T Consensus 161 ~GleV~~~~~~~~~~~~~~~~y~~~k~~~~~h~l~~ 196 (197)
T PRK00393 161 AGINIVERVPLIVGRNPHNEHYLKTKAEKMGHLLSL 196 (197)
T ss_pred CCCEEEEEecccCCCCchhhHHHHHHHHhhcCCCCC
Confidence 999999999998899999999999999999999864
No 20
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=100.00 E-value=9e-58 Score=439.12 Aligned_cols=191 Identities=53% Similarity=0.892 Sum_probs=184.9
Q ss_pred hccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCC
Q 009355 320 ERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGK 399 (537)
Q Consensus 320 er~a~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~ 399 (537)
|++++.++||.||.|++++|++..++.+|+|||+|++.+++|||||||++|.++|+|++.+|||++||+.||++|+++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~ 80 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCGFQLEAALKQIAEEGR 80 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCCchHHHHHHHHHhcCC
Confidence 57889999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccCC
Q 009355 400 GVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYG 479 (537)
Q Consensus 400 GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~G 479 (537)
||||||+ |+++|+|+.+|+++|++|+.|.+++++|..+|.+.|.|+||+|||||++|||++||||||||.|+.+|+|||
T Consensus 81 GVlVyL~-~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~~rLLtn~~~k~~~L~g~g 159 (191)
T TIGR00505 81 GVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAG 159 (191)
T ss_pred EEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCC
Confidence 9999999 999999999999999999988899999989999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCChhHHHHHHHHhhhcCCcc
Q 009355 480 LAVIGRVPILTPITEENKRYLETKRTKMGHIY 511 (537)
Q Consensus 480 IeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~ 511 (537)
|+|++++|++...+++|.+||.||++||||.+
T Consensus 160 leVv~~~~~~~~~~~~~~~y~~~k~~~~~h~~ 191 (191)
T TIGR00505 160 INIVERVPLIVGRNENNEGYLDTKAEKMGHLL 191 (191)
T ss_pred CEEEEEeccccCCCcchHHHHHHHHHhhCCCC
Confidence 99999999888889999999999999999975
No 21
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=100.00 E-value=4.6e-57 Score=426.57 Aligned_cols=169 Identities=63% Similarity=1.086 Sum_probs=137.9
Q ss_pred hhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHcC
Q 009355 319 VERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAG 398 (537)
Q Consensus 319 Ver~a~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G 398 (537)
|||++++++||+||+|++++|++..++.+|+|||+|++..++||||||||+|+++|+|++.+|||+|||++||++|+++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G 80 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCGWQLDKAMRRIAEEG 80 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCcHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccC
Q 009355 399 KGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGY 478 (537)
Q Consensus 399 ~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~ 478 (537)
+||||||+ ||+||+|+.+|+++|++|+.|.||+++|..+|++.|.|+||+|||||++|||++||||||||+|+++|+||
T Consensus 81 ~GVlVyL~-~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~ 159 (169)
T PF00925_consen 81 RGVLVYLR-QEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGF 159 (169)
T ss_dssp SEEEEEE---TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHHHHHHHTT--SEEEE-S-HHHHHHHHHT
T ss_pred CEEEEEEc-CCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcC
Confidence 99999997 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeec
Q 009355 479 GLAVIGRVPI 488 (537)
Q Consensus 479 GIeV~ervpl 488 (537)
||+|+++||+
T Consensus 160 gleV~~~vp~ 169 (169)
T PF00925_consen 160 GLEVVERVPL 169 (169)
T ss_dssp T--EEEEE--
T ss_pred CCEEEEEecC
Confidence 9999999996
No 22
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=100.00 E-value=8.4e-55 Score=418.79 Aligned_cols=193 Identities=59% Similarity=1.006 Sum_probs=185.0
Q ss_pred hhhccccccccCCceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHHHc
Q 009355 318 IVERTAISRLPTKWGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIEKA 397 (537)
Q Consensus 318 lVer~a~~~LpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~ 397 (537)
+|+++++.++||.||.|++++|++..++.+|+|||+|+|.+++|||||||++|.++|+|++.+|||++||+.||++|+++
T Consensus 1 ~V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~ 80 (193)
T cd00641 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCGPQLEEALEEIAEE 80 (193)
T ss_pred CeEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCccccccccc
Q 009355 398 GKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKG 477 (537)
Q Consensus 398 G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g 477 (537)
|+||||||+ |++++.|+.+|+++|.+|+.+.++.+++..++++.|.|+||+|||||++|||++||||||||.|+++|.|
T Consensus 81 g~GVlV~l~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGAQIL~dLGv~~mrLLs~~~~k~~~L~g 159 (193)
T cd00641 81 GGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEG 159 (193)
T ss_pred CCEEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHHHHHHHHHcCCCeEEECCCCHHHHHHHHh
Confidence 999999998 8999999999999999988888888787778889999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCChhHHHHHHHHhhhcCCcc
Q 009355 478 YGLAVIGRVPILTPITEENKRYLETKRTKMGHIY 511 (537)
Q Consensus 478 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~~ 511 (537)
|||+|++++|++.+.+++|++||.+|++||+|++
T Consensus 160 fglevv~~~~~~~~~~~~~~~y~~~k~~~~~~~~ 193 (193)
T cd00641 160 YGIEVVERVPLEVEPNEENKGYLKTKRDKMGHLL 193 (193)
T ss_pred CCCEEEEEeccCCCCChhhHHHHHhhHHhhccCC
Confidence 9999999999888889999999999999999985
No 23
>PRK07198 hypothetical protein; Validated
Probab=100.00 E-value=2.8e-40 Score=343.15 Aligned_cols=167 Identities=29% Similarity=0.527 Sum_probs=146.0
Q ss_pred EEEEEEeCCCCceEEEEEEccCCC----CCcceEEEcccCcccccccCCCCCChHHH----HHHHHHHHHcCCEEEEEEe
Q 009355 335 QAYCYRSKLDGTDHVAVVKGNMGN----GQDVLVRVHSECLTGDIFGSARCDCGNQL----DLAMQIIEKAGKGVVVYLR 406 (537)
Q Consensus 335 ~~~~Yr~~~dg~EHlALv~Gdi~~----~~~vLVRVHSeCltgDvfgS~~CDCg~qL----~~AL~~I~~~G~GVLVYLr 406 (537)
++++|+....+.+| +++|+++. ..||||||||+|++||+|||.+|||+.|| +.||++|+++|+||||||+
T Consensus 211 ~~~vf~p~~gg~~~--~i~G~p~~~~d~~~PVLVRVHSeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLr 288 (418)
T PRK07198 211 DLEVFLPPIGGQTV--YIFGDVTDLADPETELTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR 288 (418)
T ss_pred ceEEEcCCCCCeeE--EEECCcccccCCCCCceEEEeccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 57899999999995 48999854 57899999999999999999999999885 6889999999999999998
Q ss_pred CCCCCCcchhhhhhhhhhccc--CCcchhhh-----hhcCCcccccchhHHHHHHHHcCCCee-eeccCCcccccccccC
Q 009355 407 GHEGRGIGLGHKLRAYNLQDQ--GHDTVQAN-----IELGLAVDAREYGIGAQILRDLGVRTM-RLMTNNPAKFIGLKGY 478 (537)
Q Consensus 407 ~qEGRGiGL~~Kl~ay~Lqd~--G~DTveAn-----~~lG~~~D~RdYgigAQILrdLGV~kI-rLLTNNP~K~~aL~g~ 478 (537)
||||++||.+|+++|++|+. |.||+++| ..+|+ .|.|+||+|||||++|||+|| |||||||+|+.+|.+|
T Consensus 289 -QEGRgiGLvnKl~aY~~qk~q~G~DT~da~~~rte~~~G~-~D~RdyGlGAQILrdLGV~Km~RLLTNnp~K~~gL~Gf 366 (418)
T PRK07198 289 -KEGRALGEVTKFLVYNARKRQVGGDTAATYFARTECVAGV-QDMRFQELMPDVLHWLGIRRIHRLVSMSNMKYDAITGS 366 (418)
T ss_pred -CCCcchhHHHHHHHHhhhhhccCCchhhhhhcccccccCC-CcceehhHHHHHHHHhCCChhhhhcCCCHHHHHHHHhC
Confidence 99999999999999999853 79999975 23454 599999999999999999999 9999999999999999
Q ss_pred CcEEEEEeecCCCCChhHHH-HHHHHhh
Q 009355 479 GLAVIGRVPILTPITEENKR-YLETKRT 505 (537)
Q Consensus 479 GIeV~ervpl~~~~~~~n~~-YL~tK~~ 505 (537)
||+|++++|++...+++..+ =+.+|..
T Consensus 367 GLEVVErVpl~~~~~p~d~~vei~ak~~ 394 (418)
T PRK07198 367 GIEVGERVPIPDELIPADARVEIDAKKA 394 (418)
T ss_pred CCEEEEEeccCcCCCccccccchhhhhh
Confidence 99999999998887776533 2344433
No 24
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=99.59 E-value=2.6e-16 Score=161.64 Aligned_cols=161 Identities=28% Similarity=0.381 Sum_probs=137.2
Q ss_pred CCCCcceEEEcccCcccccccCCCCCChHHHHHHHHHHH---H-cCCEEEEEEeCCCCCCcchhhhhhhhhhcccCCcch
Q 009355 357 GNGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQIIE---K-AGKGVVVYLRGHEGRGIGLGHKLRAYNLQDQGHDTV 432 (537)
Q Consensus 357 ~~~~~vLVRVHSeCltgDvfgS~~CDCg~qL~~AL~~I~---~-~G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd~G~DTv 432 (537)
..+..+.||.|++|.|+..++|.+|+|+.|++.+=..|. + .| |||.|++ |+++|++|..++++|++|+-|-+++
T Consensus 154 ~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~G-GVl~r~g-htea~vdL~~l~gl~pl~~l~elv~ 231 (357)
T KOG1284|consen 154 AHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDG-GVLERLG-HTEAGVDLCELAGLYPLGVLGELVV 231 (357)
T ss_pred hcCccceeEEecccccchhhcccccCChhhhccccccccceeecCC-CeEEEcc-ccccchhHHHHcCCCchhhhhhhhh
Confidence 346789999999999999999999999999998887776 6 47 9999996 9999999999999999999999999
Q ss_pred hhhhhcCCcccccchhHHHHHHHHcCCCeeeeccCCcccccccccCC--cEEEEEeecCCCC---------ChhHHHHHH
Q 009355 433 QANIELGLAVDAREYGIGAQILRDLGVRTMRLMTNNPAKFIGLKGYG--LAVIGRVPILTPI---------TEENKRYLE 501 (537)
Q Consensus 433 eAn~~lG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~G--IeV~ervpl~~~~---------~~~n~~YL~ 501 (537)
+++.-+-++.|.|.|+..-.|+-+++..-+|+++|||+|+......- ...++|+++.... ..+-.-|+.
T Consensus 232 q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~ 311 (357)
T KOG1284|consen 232 QADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLG 311 (357)
T ss_pred cCCcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeec
Confidence 99999999999999999999999999999999999999998887755 4456777654211 122356999
Q ss_pred HHhhhcCCccCCCCCCCccC
Q 009355 502 TKRTKMGHIYGSDLQGPLFG 521 (537)
Q Consensus 502 tK~~k~gH~~~~~~~~~~~~ 521 (537)
+|.++|||... +++.+.+
T Consensus 312 ~kie~r~h~e~--l~~~i~~ 329 (357)
T KOG1284|consen 312 TKIEVRGHLEC--LPDDIFG 329 (357)
T ss_pred hhhhheeehhc--ccchhcC
Confidence 99999999985 4444433
No 25
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=83.66 E-value=3.3 Score=46.14 Aligned_cols=159 Identities=24% Similarity=0.314 Sum_probs=97.4
Q ss_pred HHHHHHHHCCCEEEEEeCCCCCceeEEEEEc-----CCCCHHHHHHH----------HHhCCceEEeecCHHHHHhcCCC
Q 009355 117 EQALNTLRQGKFVIVVEDENGDVEGNLVMAA-----SLTSPRHVAFM----------VKHGSGIVSVGMKEEDLQRLNLP 181 (537)
Q Consensus 117 ~~Ai~alr~G~~VvV~Dde~rE~EgdLv~aA-----e~~T~e~vaFm----------~r~~~Glicvam~~~~~~rL~Lp 181 (537)
.+.-+||++|+|||..+. -++.-+ -..|+-.+.-. +.-..|.+|+-++++.+..|++.
T Consensus 30 pqv~eal~~~epVVales-------tiitHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~ 102 (614)
T KOG3009|consen 30 PQVKEALANGEPVVALES-------TIITHGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASS 102 (614)
T ss_pred HHHHHHHhcCCCEEEeEe-------eeeecCCcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHHHHhhc
Confidence 478899999999998643 222211 11122222222 23346999999999999999976
Q ss_pred CCCCCCCCCCCCCCceEEeeeccCCCccCCChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhH-HHH
Q 009355 182 LMSPEAENEDSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTE-ASV 260 (537)
Q Consensus 182 ~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTE-AaV 260 (537)
.-+.. .-.+..-++++.+-.. |-||+-. |+- +|.. ..-.=|+.||- |||-+-+-|+- ++-
T Consensus 103 g~~~~--kvsrRD~~~v~i~rlv-ggTtvaa------Tm~-iA~~-~gI~vfaTggi--------ggvhr~An~smdisa 163 (614)
T KOG3009|consen 103 GPSAV--KVSRRDIASVVIVRLV-GGTTVAA------TMI-IAHA-AGIVVFATGGI--------GGVHRGANQSMDISA 163 (614)
T ss_pred Ccccc--ccccccccccceeeec-CCcchhh------hhh-hccc-ceEEEEecCCc--------chhhhccccccchhh
Confidence 53221 2233445788887665 4455422 221 1111 11234777776 77754444343 344
Q ss_pred HHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCEEeeh
Q 009355 261 DLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSII 306 (537)
Q Consensus 261 dLarlAGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi~ 306 (537)
||-. .|-.|++|+|+=|. +..+.+...+|-+.++.++++..
T Consensus 164 dl~e-lgrtpvavv~agvk----siLdip~tle~letq~V~vvtlg 204 (614)
T KOG3009|consen 164 DLTE-LGRTPVAVVSAGVK----SILDIPKTLEYLETQGVVVVTLG 204 (614)
T ss_pred hhhh-hcCCcceEEecchh----hhccchhhhhhhccccEEEEEeC
Confidence 4444 48899999998765 47778888889999999888864
No 26
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=77.45 E-value=6.5 Score=44.90 Aligned_cols=88 Identities=19% Similarity=0.383 Sum_probs=63.6
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009355 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (537)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGR 411 (537)
++|+...+ ...++|+.|-=+..+|.-. =+=+.+..||||-|.. ..|+-.|++.....+.|||+.+-|-.
T Consensus 33 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~~~~~~~Gvl~iv~NYt-- 106 (574)
T TIGR02361 33 VVYRRDLN-KDKVSLISGGGSGHEPAHAGFVGKGMLTAAVAGDVFASPS---TKQILAAIRAVVGSEAGTLLIVKNYT-- 106 (574)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHHhcCCCCcEEEEecccH--
Confidence 45665444 4678999886444455322 1334577899999886 57899999998875789998876433
Q ss_pred CcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCC
Q 009355 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVR 460 (537)
Q Consensus 412 GiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~ 460 (537)
-|--+||++++.++.-|++
T Consensus 107 ------------------------------GD~lnF~~A~e~a~~eg~~ 125 (574)
T TIGR02361 107 ------------------------------GDRLNFGLAAEKAKAEGYN 125 (574)
T ss_pred ------------------------------HHhhhHHHHHHHHHhCCCc
Confidence 2667899999999999986
No 27
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=74.47 E-value=13 Score=39.91 Aligned_cols=88 Identities=18% Similarity=0.318 Sum_probs=62.2
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009355 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (537)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGR 411 (537)
+.|+...+ ...++++.|-=+..+|.-. =+=+.|..||||-|.. ..|.-+|++.+. .|.|||+..-|-.
T Consensus 35 vv~~~~~~-~~kV~lIsGGGSGHEPah~GfVG~GmLdaav~G~VFaSPs---~~~Il~ai~av~-~~~GvL~iv~NYt-- 107 (331)
T PRK14481 35 VIVRKDKP-PGKVALVSGGGSGHEPAHAGFVGEGMLDAAVCGAVFTSPT---PDQILEAIKAVD-TGAGVLLIVKNYS-- 107 (331)
T ss_pred EEEecCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcH--
Confidence 34555444 4578888876444455322 1334588899999886 478999998886 4679998876332
Q ss_pred CcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCe
Q 009355 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRT 461 (537)
Q Consensus 412 GiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~k 461 (537)
-|--+||++++.++.-|++-
T Consensus 108 ------------------------------GD~lnF~lA~E~a~~eGi~v 127 (331)
T PRK14481 108 ------------------------------GDVMNFEMAAELAEMEGIEV 127 (331)
T ss_pred ------------------------------HHhccHHHHHHHHHhCCCCE
Confidence 26779999999999999964
No 28
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=72.63 E-value=13 Score=40.17 Aligned_cols=89 Identities=21% Similarity=0.398 Sum_probs=60.7
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009355 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (537)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGR 411 (537)
+.|+........++|+.|-=+..+|.-. =+=+.+..||||-|.. ..|+-+|++.+. .|.|||+.+-|-.|
T Consensus 34 vv~~~~~~~~~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VFaSPs---~~qI~~ai~av~-~~~GvLlivkNYtG- 108 (356)
T PRK11468 34 YVTRADAPVAGKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIFTSPT---PDQMFECAMQVD-GGEGVLLIIKNYTG- 108 (356)
T ss_pred EEEeCCCCCCCcEEEEecCCccccccccceecCCcccceeeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHH-
Confidence 3455444324568888876444455322 1334577899998886 578999998865 56799988764333
Q ss_pred CcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCe
Q 009355 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRT 461 (537)
Q Consensus 412 GiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~k 461 (537)
|--+|+++++.++.-|++-
T Consensus 109 -------------------------------DvlNF~mAaE~a~~eGi~v 127 (356)
T PRK11468 109 -------------------------------DVLNFETATELLHDSGVKV 127 (356)
T ss_pred -------------------------------hhccHHHHHHHHHhCCCcE
Confidence 6678899999999888863
No 29
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=70.60 E-value=13 Score=39.82 Aligned_cols=89 Identities=19% Similarity=0.361 Sum_probs=62.3
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009355 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (537)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGR 411 (537)
+.|+...+....++++.|-=+..+|.-. =+=+.|..||||-|.. ..|.-+|++.+.. |.|||+..-|-.
T Consensus 35 vv~~~~~~~~~kV~lIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~iv~NYt-- 108 (329)
T TIGR02363 35 VIVRKDKKVNGKVALVSGGGSGHEPAHAGFVGYGMLDAAVPGEVFTSPT---PDQILEAIKAVDQ-GAGVLLIVKNYT-- 108 (329)
T ss_pred EEEeCCCCCCCCEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcH--
Confidence 3555544434578898876444455322 1334588899999886 5788899988764 679998875332
Q ss_pred CcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCe
Q 009355 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRT 461 (537)
Q Consensus 412 GiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~k 461 (537)
-|--+||++++.++.-|++-
T Consensus 109 ------------------------------GD~lnF~mA~E~a~~eGi~v 128 (329)
T TIGR02363 109 ------------------------------GDVMNFEMAAELAEDEGIKV 128 (329)
T ss_pred ------------------------------HHhccHHHHHHHHHHcCCcE
Confidence 26778999999999999963
No 30
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=68.81 E-value=5.2 Score=42.65 Aligned_cols=86 Identities=26% Similarity=0.528 Sum_probs=53.2
Q ss_pred EEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 009355 338 CYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGRG 412 (537)
Q Consensus 338 ~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGRG 412 (537)
+|+... ....++|+.|-=+..+|... =+=+.|..||||-|.. ..|.-+|++.+ ..+.|||+.+-|..|
T Consensus 20 v~~~~~-~~~kV~lIsGGGSGHEP~~~GfVG~GmLdAav~G~VFaSPs---~~qI~~ai~~~-~~~~Gvl~iv~NYtG-- 92 (325)
T PF02733_consen 20 VYRKDI-PKDKVALISGGGSGHEPAHAGFVGKGMLDAAVCGDVFASPS---ADQILAAIKAV-DSGKGVLLIVKNYTG-- 92 (325)
T ss_dssp EEETT---TTS-EEEEEEEESSTTTTGGGBSCTSBSEEEEEEETS------HHHHHHHHHHH--SSS-EEEEEESSHH--
T ss_pred EEeCCC-CCCCEEEEecCCCCcccchhhhccCCccceEeeCCCcCCCC---HHHHHHHHHhc-cCCCCEEEEEecchH--
Confidence 455443 55678888775333444211 1334577899998885 57999999998 567799988864322
Q ss_pred cchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCC
Q 009355 413 IGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVR 460 (537)
Q Consensus 413 iGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~ 460 (537)
|-=+||++++.++.-|++
T Consensus 93 ------------------------------D~lNF~~A~E~a~~~Gi~ 110 (325)
T PF02733_consen 93 ------------------------------DVLNFGMAAEKARAEGIK 110 (325)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTT--
T ss_pred ------------------------------HHhhHHHHHHHHHhCCCC
Confidence 566899999999999985
No 31
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=66.90 E-value=15 Score=41.90 Aligned_cols=87 Identities=23% Similarity=0.433 Sum_probs=60.9
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009355 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (537)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGR 411 (537)
+.|+...+ ...++|+.|-=+..+|.-. =+=+.|..||||-|.. ..|+-.|++.+. .|.|||+.+-|..|
T Consensus 34 vi~~~~~~-~~kV~lisGGGSGHEP~h~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~NYtG- 107 (568)
T PRK14479 34 VVRRTPTP-EGKVAVVSGGGSGHEPAFAGYVGPGMLDAAVCGNVFTSPS---ADQVYAAIRAAD-GGAGVLLIVGNYAG- 107 (568)
T ss_pred EEEecCCC-CCceEEEecCCccccccccccccCCccceeeccCccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcHH-
Confidence 34554443 4578899876444455322 1334578899998886 578999998886 46699988764322
Q ss_pred CcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCC
Q 009355 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVR 460 (537)
Q Consensus 412 GiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~ 460 (537)
|--+|+++++.++.-|++
T Consensus 108 -------------------------------D~lnF~~A~e~a~~~g~~ 125 (568)
T PRK14479 108 -------------------------------DVMNFGLAAELARAEGID 125 (568)
T ss_pred -------------------------------HHhhHHHHHHHHHhcCCc
Confidence 667899999999999985
No 32
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=62.15 E-value=24 Score=37.85 Aligned_cols=88 Identities=24% Similarity=0.445 Sum_probs=61.0
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009355 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (537)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGR 411 (537)
+.|+.... ...++|+.|-=+..+|.-. =+=+.|..||||-|.. ..|.-.|++.+. .|.|||+...|-.|
T Consensus 34 vv~~~~~~-~~kV~lIsGGGSGHEPah~GyVG~GmLdAav~G~VFaSPs---~~qI~~ai~av~-~~~GvL~ivkNYtG- 107 (329)
T PRK14483 34 YVYDIEKD-DQLVPIISGGGSGHEPAHIGYVGKGMLTAAVNGSIFTPPT---AEQILAATRLVP-KGKGVFFIIKNFEA- 107 (329)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHH-
Confidence 34555443 4678999876444455322 1334588899998886 578999998875 45699988764332
Q ss_pred CcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCe
Q 009355 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRT 461 (537)
Q Consensus 412 GiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~k 461 (537)
|-=+|+++++.++.-|++-
T Consensus 108 -------------------------------DvlnF~mA~E~a~~eGi~v 126 (329)
T PRK14483 108 -------------------------------DVAEFSAAIQIARQEGRQI 126 (329)
T ss_pred -------------------------------HhhhHHHHHHHHHhCCCcE
Confidence 5668899999999988863
No 33
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=59.00 E-value=33 Score=36.74 Aligned_cols=88 Identities=23% Similarity=0.394 Sum_probs=61.6
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009355 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (537)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGR 411 (537)
..|+...+ ...++|+.|-=+..+|.-. =+=+.|..||||-|.. ..|.-+|++.+. .|.|||+..-|-.
T Consensus 32 vv~~~~~~-~~kValIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~-~~~GvL~ivkNYt-- 104 (326)
T TIGR02362 32 GIYDSNFD-DQQIPIISGGGSGHEPAHWGYVGEGMLSAAIMGDVFVPPT---AQDILEAIRQVD-RGKGVFVIIKNFE-- 104 (326)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEeccCH--
Confidence 34454443 4678999876444455322 1334578899999886 478999998876 4679998876332
Q ss_pred CcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCe
Q 009355 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRT 461 (537)
Q Consensus 412 GiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~k 461 (537)
-|--+||++++.++.-|++-
T Consensus 105 ------------------------------GD~lNF~mA~E~a~~eGi~v 124 (326)
T TIGR02362 105 ------------------------------ADLSEFSQAIQQARQEGRQI 124 (326)
T ss_pred ------------------------------HHHhhHHHHHHHHHHcCCcE
Confidence 26678999999999999963
No 34
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=58.59 E-value=26 Score=40.29 Aligned_cols=87 Identities=17% Similarity=0.359 Sum_probs=60.6
Q ss_pred EEEEeCCCCceEEEEEEccCCCCCcceE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 009355 337 YCYRSKLDGTDHVAVVKGNMGNGQDVLV-----RVHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYLRGHEGR 411 (537)
Q Consensus 337 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLV-----RVHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYLr~qEGR 411 (537)
++|+...+ ...++||.|-=+..+|.-. =+=+.+..||||-|.. ..|+-+|++... .|.|||+.+-|-.|
T Consensus 37 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~qi~~ai~~v~-~~~Gvl~ivkNYtG- 110 (584)
T PTZ00375 37 VVVRSDID-KTKVLLISGGGSGHEPAHAGFVGKGWLTAAVCGSVFASPS---TKHVLAAIEYVP-NGPGCLLIVKNYTG- 110 (584)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeecccccCCCC---HHHHHHHHHHhc-CCCCEEEEecccHH-
Confidence 44555443 4678899876444455322 1334577899999886 578999998775 56699988764332
Q ss_pred CcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCC
Q 009355 412 GIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVR 460 (537)
Q Consensus 412 GiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~ 460 (537)
|--+||++++.++.-|++
T Consensus 111 -------------------------------D~lnF~lA~e~a~~eGi~ 128 (584)
T PTZ00375 111 -------------------------------DILNFELAVEQARARGIQ 128 (584)
T ss_pred -------------------------------HHhhHHHHHHHHHhCCCc
Confidence 667899999999998985
No 35
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=57.47 E-value=4 Score=34.39 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=18.5
Q ss_pred cHHHHHHHHHCCCEEEEEeCCC
Q 009355 115 SIEQALNTLRQGKFVIVVEDEN 136 (537)
Q Consensus 115 ~I~~Ai~alr~G~~VvV~Dde~ 136 (537)
.|+++..+|++|+.||++|.+.
T Consensus 38 kv~qv~~qL~~G~avI~~se~~ 59 (70)
T PF06794_consen 38 KVEQVKQQLKSGEAVIVFSELH 59 (70)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTT
T ss_pred HHHHHHHHHHcCCEEEEECCcc
Confidence 4899999999999999998753
No 36
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=43.81 E-value=48 Score=29.50 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=29.0
Q ss_pred HHH-HHcCCCeee--eccCCcccccccccCCcEEEEEee
Q 009355 452 QIL-RDLGVRTMR--LMTNNPAKFIGLKGYGLAVIGRVP 487 (537)
Q Consensus 452 QIL-rdLGV~kIr--LLTNNP~K~~aL~g~GIeV~ervp 487 (537)
+++ +.+|+++|. ++.+|+.-++..+.+|.++++..+
T Consensus 103 ~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 103 EYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp HHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred HHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEe
Confidence 456 889999987 678899889999999999998876
No 37
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=43.76 E-value=20 Score=28.18 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCCEEeehhH
Q 009355 289 PSLRKLALEHSIPISSIIDL 308 (537)
Q Consensus 289 ~~l~~fA~~h~L~ivsi~dL 308 (537)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 46899999999999999993
No 38
>PRK04966 hypothetical protein; Provisional
Probab=41.62 E-value=30 Score=29.40 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.3
Q ss_pred cHHHHHHHHHCCCEEEEEeCCC
Q 009355 115 SIEQALNTLRQGKFVIVVEDEN 136 (537)
Q Consensus 115 ~I~~Ai~alr~G~~VvV~Dde~ 136 (537)
.|++...+|++|+.|||+|.+.
T Consensus 38 kv~qv~~qL~~G~~viv~se~~ 59 (72)
T PRK04966 38 KVADVKRQLQSGEAVLVWSELH 59 (72)
T ss_pred HHHHHHHHHHcCCEEEEECCCC
Confidence 5899999999999999997643
No 39
>PRK00304 hypothetical protein; Provisional
Probab=39.20 E-value=33 Score=29.42 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.7
Q ss_pred cHHHHHHHHHCCCEEEEEeCC
Q 009355 115 SIEQALNTLRQGKFVIVVEDE 135 (537)
Q Consensus 115 ~I~~Ai~alr~G~~VvV~Dde 135 (537)
.|++...+|++|+.||++|..
T Consensus 37 kv~qv~~qL~~G~~vIvfse~ 57 (75)
T PRK00304 37 RVLRVRQALTKGQAVILFDPE 57 (75)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 588999999999999999764
No 40
>PRK08296 hypothetical protein; Provisional
Probab=38.71 E-value=28 Score=40.16 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=54.4
Q ss_pred CCCEEEEEeCCC-CCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecC-----HHHHHhcCCCCCCCCCCCCCCCCCceE
Q 009355 125 QGKFVIVVEDEN-GDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMK-----EEDLQRLNLPLMSPEAENEDSSAPTFT 198 (537)
Q Consensus 125 ~G~~VvV~Dde~-rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~-----~~~~~rL~Lp~m~~~~~n~~~~~taFt 198 (537)
.|+..||.+-++ .+-+..-|+-+...+|..+..+ ....|+|+-.=. .-.|+.+|+|.++........-.+...
T Consensus 511 ~G~vrvv~~~~~~~~~~~g~ILV~~~tdP~~~~~~-~~~~GiVte~Gg~~SHaAIvARe~GIPaVvgv~~at~~l~dG~~ 589 (603)
T PRK08296 511 EGPARVIRSADELSEVQEGEILVCPVTSPSWAPIF-AKIKATVTDIGGVMSHAAIVCREYGLPAVVGTGNATKRIKTGQR 589 (603)
T ss_pred EEEEEEeCCHHHHHhccCceEEEeCCCCHHHHHHH-HHheEEEEecCCCcchHHHHHHHcCCCEEEcCccHhhhcCCCCE
Confidence 466556554332 1222334555677788887777 668898875322 337899999999886433444567889
Q ss_pred EeeeccCCCc
Q 009355 199 ITVDAKFGTT 208 (537)
Q Consensus 199 VsVDa~~gtt 208 (537)
|+||..+|+.
T Consensus 590 V~vDg~~G~V 599 (603)
T PRK08296 590 LRVDGTKGVV 599 (603)
T ss_pred EEEECCCCEE
Confidence 9999876653
No 41
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=36.60 E-value=1.8e+02 Score=33.12 Aligned_cols=98 Identities=20% Similarity=0.365 Sum_probs=68.5
Q ss_pred ceeEEEEEEEeCCCCceEEEEEEccCCCCCcceEE-----EcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEE
Q 009355 331 WGLFQAYCYRSKLDGTDHVAVVKGNMGNGQDVLVR-----VHSECLTGDIFGSARCDCGNQLDLAMQIIEKAGKGVVVYL 405 (537)
Q Consensus 331 ~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltgDvfgS~~CDCg~qL~~AL~~I~~~G~GVLVYL 405 (537)
+-+-|++.|++......|++|+.|-=...+|.--- +-..-+-||||-|.. -.|+..|++..+. -.|.|++.
T Consensus 31 ~~~~r~vl~~~~~~~~~kValiSGGGSGHEPtHAGfVGkGmLtaai~G~iFASPs---tkqI~aairaV~~-~~GtLlIV 106 (582)
T KOG2426|consen 31 HPEDRVVLFRDASAPKPKVALISGGGSGHEPTHAGFVGKGMLTAAIAGDIFASPS---TKQILAAIRAVEG-EAGTLLIV 106 (582)
T ss_pred cccceEEEEeecCCCCCceEEEeCCCCCCCcccccccccchhhhhhhcccccCCc---HHHHHHHHHHhcc-CCceEEEE
Confidence 34567788888766668999999875556664211 122345689998875 4699999999954 44888887
Q ss_pred eCCCCCCcchhhhhhhhhhcccCCcchhhhhhcCCcccccchhHHHHHHHHcCCCeeeec
Q 009355 406 RGHEGRGIGLGHKLRAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDLGVRTMRLM 465 (537)
Q Consensus 406 r~qEGRGiGL~~Kl~ay~Lqd~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIrLL 465 (537)
.|=.| |.=+||+++.=-|..|++ ++|+
T Consensus 107 KNYTG--------------------------------D~LhFGLAaErara~G~~-ve~v 133 (582)
T KOG2426|consen 107 KNYTG--------------------------------DRLHFGLAAERARAAGIK-VELV 133 (582)
T ss_pred ecccc--------------------------------ceeehhhhHHHHHhcCCc-eEEE
Confidence 63222 555889999999999984 4443
No 42
>PLN02880 tyrosine decarboxylase
Probab=35.09 E-value=76 Score=35.44 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=44.6
Q ss_pred cccCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCE
Q 009355 250 LRRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPI 302 (537)
Q Consensus 250 l~R~GhTEAaVdLarlAGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~i 302 (537)
.-+...-|.+++-.+.+|+.|.+|++..=.-..|...+.+++.++|++||+.+
T Consensus 220 ~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 220 ALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred cCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEE
Confidence 34556677888888889999999999986655789999999999999999876
No 43
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.95 E-value=93 Score=33.00 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHCCCEEEEEeCCC-CCceeEE--EEEcCCCCHHHHHHHHHhCCceEEeecCHHHHHhcCCCCCCCCCCCC
Q 009355 114 SSIEQALNTLRQGKFVIVVEDEN-GDVEGNL--VMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENE 190 (537)
Q Consensus 114 ~~I~~Ai~alr~G~~VvV~Dde~-rE~EgdL--v~aAe~~T~e~vaFm~r~~~Glicvam~~~~~~rL~Lp~m~~~~~n~ 190 (537)
..|...+++|++|+.|.+.-|.+ ..+++.. .|+-+..|+--++.|++.++=-|- |.+... +
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vi-------------p~~~~r--~- 245 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVV-------------PVFPVR--N- 245 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCEE-------------EEEEEE--e-
Confidence 67999999999999995554444 5665533 577888888888888887642221 221111 2
Q ss_pred CCCCCceEEeeeccCCCccCCChhhHHHHHHHHcC
Q 009355 191 DSSAPTFTITVDAKFGTTTGVSASDRAKTVLALSS 225 (537)
Q Consensus 191 ~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAd 225 (537)
.++..|++.|... .|+--..|=+.+.+.+++
T Consensus 246 -~~g~~y~l~i~p~---~~~~~~~D~~~~a~~mn~ 276 (308)
T COG1560 246 -PDGSGYTLHIHPP---MTDDPSEDVEADAQRMND 276 (308)
T ss_pred -CCCCeEEEEEecc---ccCCCCCCHHHHHHHHHH
Confidence 2356699999872 344444455555555553
No 44
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=33.57 E-value=68 Score=37.05 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCEEe
Q 009355 253 AGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISS 304 (537)
Q Consensus 253 ~GhTEAaVdLarlAGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivs 304 (537)
+|| ||-.-||.-|-.-.=++.-++..+||-|...-++.++|+.-+.|+|-
T Consensus 209 PGH--aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVv 258 (683)
T KOG1145|consen 209 PGH--AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVV 258 (683)
T ss_pred CcH--HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEE
Confidence 444 44445566555544444444555589999999999999999999874
No 45
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=33.55 E-value=2.1e+02 Score=32.73 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=53.9
Q ss_pred EEEEcCCCCHHHHHHHHHhCCceEEeecC-----HHHHHhcCCCCCCCCCCCCCCCCCceEEeeeccCCCc-cCCC----
Q 009355 143 LVMAASLTSPRHVAFMVKHGSGIVSVGMK-----EEDLQRLNLPLMSPEAENEDSSAPTFTITVDAKFGTT-TGVS---- 212 (537)
Q Consensus 143 Lv~aAe~~T~e~vaFm~r~~~Glicvam~-----~~~~~rL~Lp~m~~~~~n~~~~~taFtVsVDa~~gtt-TGIS---- 212 (537)
.|+-++..+|+.+..| +.+.|+|+--=. .-.|+.||+|.++............-.|+||...|.. -|.-
T Consensus 382 ~ILV~~~t~P~~~~~~-~~a~GIVte~Gg~tSHaAivARelgiP~VvG~~~~~~~~~~G~~VtvDg~~G~V~~G~~~~~~ 460 (530)
T PRK05878 382 VILVRDHTRPDDVHGM-LAAQGIVTEVGGATSHAAVVSRELGRVAVVGCGAGVAAALAGKEITVDGYEGEVRQGVLALSA 460 (530)
T ss_pred EEEEECCCCHHHHhhh-HhheEEEEccCCccchHHHHHHHcCCCEEEcccchhhccCCCCEEEEECCCCEEEeCcccCcC
Confidence 5566778899999999 458888875322 2379999999998763222333457899999865542 2322
Q ss_pred ----hhhHHHHHHHHcCC
Q 009355 213 ----ASDRAKTVLALSSP 226 (537)
Q Consensus 213 ----A~DRA~TIr~LAdp 226 (537)
.....++++.+|+.
T Consensus 461 ~~~~~~~~~~~l~~~ad~ 478 (530)
T PRK05878 461 WSESDTPELRELADIAQR 478 (530)
T ss_pred ccccCCHHHHHHHHHHHH
Confidence 12345666666644
No 46
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.39 E-value=51 Score=33.62 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCCeeeeccCC-----cccccccccCCcEEEEEeecCCCCCh------hHHHHHHHHhhh
Q 009355 449 IGAQILRDLGVRTMRLMTNN-----PAKFIGLKGYGLAVIGRVPILTPITE------ENKRYLETKRTK 506 (537)
Q Consensus 449 igAQILrdLGV~kIrLLTNN-----P~K~~aL~g~GIeV~ervpl~~~~~~------~n~~YL~tK~~k 506 (537)
-..+-|+.||+++|.++|-. ..-...|++.|++|+...-+-+..|- -..-|=-+|+-+
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~ 176 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVF 176 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhc
Confidence 45566999999999999852 22355689999999998887765543 345666677664
No 47
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=30.34 E-value=42 Score=35.39 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCeeeeccCCcccccccccCCcEEEEEee
Q 009355 449 IGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLAVIGRVP 487 (537)
Q Consensus 449 igAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervp 487 (537)
-..+.|+..||++|||..-+|.=+.++.+-||+|.--||
T Consensus 17 ~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 17 KVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp HHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-
T ss_pred HHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccC
Confidence 467789999999999999999999999999999998888
No 48
>PLN02590 probable tyrosine decarboxylase
Probab=29.23 E-value=1.1e+02 Score=34.81 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=41.6
Q ss_pred ccCchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCE
Q 009355 251 RRAGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPI 302 (537)
Q Consensus 251 ~R~GhTEAaVdLarlAGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~i 302 (537)
-+...-|++++-.+.+|+.|..|++..=.-..|..-+.+++.++|++||+-+
T Consensus 269 md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~Wl 320 (539)
T PLN02590 269 MPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWL 320 (539)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeE
Confidence 3455677788878888999999998886655688888999999999998744
No 49
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.55 E-value=2e+02 Score=29.35 Aligned_cols=92 Identities=20% Similarity=0.148 Sum_probs=52.8
Q ss_pred HHHHHHHHHHH-cCCEEEEEEeCCCCCCcchhhhhhhhhhcc-cCCcchhhhhhcCCcccccchhHHHHHHHHcCCCeee
Q 009355 386 QLDLAMQIIEK-AGKGVVVYLRGHEGRGIGLGHKLRAYNLQD-QGHDTVQANIELGLAVDAREYGIGAQILRDLGVRTMR 463 (537)
Q Consensus 386 qL~~AL~~I~~-~G~GVLVYLr~qEGRGiGL~~Kl~ay~Lqd-~G~DTveAn~~lG~~~D~RdYgigAQILrdLGV~kIr 463 (537)
+|..|.+.+.. ..--+|+|-.-...-.+|- .++..-..+. .|...... -.-...-|+.||+++|-
T Consensus 58 ~l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~-~~~~~~i~~~~~g~p~tt~------------~~A~~~AL~alg~~RIa 124 (239)
T TIGR02990 58 RLTEAAALILPDEELDVVAYSCTSASVVIGD-DEVTRAINAAKPGTPVVTP------------SSAAVDGLAALGVRRIS 124 (239)
T ss_pred hHHHHHHHhcCCCCCCEEEEccchhheecCH-HHHHHHHHhcCCCCCeeCH------------HHHHHHHHHHcCCCEEE
Confidence 45555555533 6888999976333333442 2222211111 12211111 11233469999999999
Q ss_pred eccCCccc-----ccccccCCcEEEEEeecCC
Q 009355 464 LMTNNPAK-----FIGLKGYGLAVIGRVPILT 490 (537)
Q Consensus 464 LLTNNP~K-----~~aL~g~GIeV~ervpl~~ 490 (537)
|+|-.+.- ...|+..|++|+....+..
T Consensus 125 lvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 125 LLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred EECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 99976655 3447899999998766543
No 50
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=25.87 E-value=1.6e+02 Score=30.11 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=43.2
Q ss_pred HHHHHHHHHC--------CCEEEEEeCCCCC--------------ceeEEEEEcCCCCHHHHHHHHHhCCceEEeecCHH
Q 009355 116 IEQALNTLRQ--------GKFVIVVEDENGD--------------VEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEE 173 (537)
Q Consensus 116 I~~Ai~alr~--------G~~VvV~Dde~rE--------------~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~~~ 173 (537)
+++-+.+++. |+-|||+||--.. .-.++|+|.--+.++...-|.+++.+++|+.||..
T Consensus 106 l~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~~ 185 (220)
T COG1926 106 LLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPAP 185 (220)
T ss_pred HHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEcCCcc
Confidence 4555556654 5678999984211 22478888888888899999999999999998865
No 51
>PRK06354 pyruvate kinase; Provisional
Probab=25.01 E-value=1.1e+02 Score=35.32 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=53.9
Q ss_pred CCCEEEEEeCCC-CCceeEEEEEcCCCCHHHHHHHHHhCCceEEeecC-----HHHHHhcCCCCCCCCCCCCCCCCCceE
Q 009355 125 QGKFVIVVEDEN-GDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMK-----EEDLQRLNLPLMSPEAENEDSSAPTFT 198 (537)
Q Consensus 125 ~G~~VvV~Dde~-rE~EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~-----~~~~~rL~Lp~m~~~~~n~~~~~taFt 198 (537)
.|..+++-+.++ .+-+..-|+-++..+|+.+..| +...|+|+-.=. .-.|+.||+|.++........-.....
T Consensus 494 ~G~v~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~~-~~~~GiVt~~Gg~tSH~AIvAR~lgIPaVvg~~~~~~~l~~G~~ 572 (590)
T PRK06354 494 SGKARVAKTAAEVAKVNEGDILVTPSTDADMIPAI-EKAAAIITEEGGLTSHAAVVGLRLGIPVIVGVKNATSLIKDGQI 572 (590)
T ss_pred cceEEEeCChHhhccCCCCeEEEeCCCCHHHHHhH-HhcEEEEEecCCCcchHHHHHHhcCCCEEEeccchhhccCCCCE
Confidence 565555444333 1122344666777999887775 889999986432 238999999998875333333456789
Q ss_pred EeeeccCCC
Q 009355 199 ITVDAKFGT 207 (537)
Q Consensus 199 VsVDa~~gt 207 (537)
|+||...|.
T Consensus 573 v~vDg~~G~ 581 (590)
T PRK06354 573 ITVDAARGV 581 (590)
T ss_pred EEEECCCCE
Confidence 999987664
No 52
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=23.94 E-value=95 Score=23.83 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=17.5
Q ss_pred hHHHHHHHHHcCCCEEeehhHHH
Q 009355 288 LPSLRKLALEHSIPISSIIDLIR 310 (537)
Q Consensus 288 ~~~l~~fA~~h~L~ivsi~dLi~ 310 (537)
+..+++||+++|++.||.+.+.+
T Consensus 21 r~~~E~~Ar~~G~~~IT~e~v~~ 43 (45)
T PF08369_consen 21 RDAAEKYARERGYDEITVEVVDA 43 (45)
T ss_dssp HHHHHHHHHHCT-SEE-HHHHHH
T ss_pred HHHHHHHHHHcCCCeECHHHHHh
Confidence 45689999999999999887754
No 53
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=23.62 E-value=1.3e+02 Score=34.15 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=34.1
Q ss_pred cCchhHHHHHHHHH--cCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCEEee
Q 009355 252 RAGHTEASVDLLVL--AGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSI 305 (537)
Q Consensus 252 R~GhTEAaVdLarl--AGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi 305 (537)
++||. |.-.||. |-+.+.+++.- +.+||-|...-++.+-|+..+.|+|=.
T Consensus 62 TPGHe--AFt~mRaRGa~vtDIaILVV--a~dDGv~pQTiEAI~hak~a~vP~iVA 113 (509)
T COG0532 62 TPGHE--AFTAMRARGASVTDIAILVV--AADDGVMPQTIEAINHAKAAGVPIVVA 113 (509)
T ss_pred CCcHH--HHHHHHhcCCccccEEEEEE--EccCCcchhHHHHHHHHHHCCCCEEEE
Confidence 34443 3444444 44556665553 334799999999999999999999865
No 54
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.03 E-value=1.1e+02 Score=32.63 Aligned_cols=134 Identities=21% Similarity=0.246 Sum_probs=79.6
Q ss_pred HHHHHHHHcC--CCCeEEEEEecCCCC--CCCCChHHHHHHHHHcCCCEEeehhHHHH--H---hhc--cchhhcccccc
Q 009355 258 ASVDLLVLAG--LNPVSVLSAVVDPED--GSMSSLPSLRKLALEHSIPISSIIDLIRY--R---RKR--ETIVERTAISR 326 (537)
Q Consensus 258 AaVdLarlAG--l~PaaVi~elv~~~d--G~ma~~~~l~~fA~~h~L~ivsi~dLi~y--r---~~~--E~lVer~a~~~ 326 (537)
|+.-|-.|.+ ..-++|+..-=.+ . |.-...+...++|.+||||+..-+.|..- . +.- +-.|--.--.-
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp-~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~l~~l~~D~ivvvayG~i 91 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKP-AGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEELAALDPDLIVVVAYGQI 91 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCc-cCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHHHhccCCCEEEEEehhhh
Confidence 3444555554 6666666654222 2 34556688999999999999988766421 1 000 00110000011
Q ss_pred cc------CCceeEEEEE-----EEeCCCCceEEEEEEccCCCCCcceEEEcccCcccccccCCCCCC-----hHHHHHH
Q 009355 327 LP------TKWGLFQAYC-----YRSKLDGTDHVAVVKGNMGNGQDVLVRVHSECLTGDIFGSARCDC-----GNQLDLA 390 (537)
Q Consensus 327 Lp------T~~G~F~~~~-----Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltgDvfgS~~CDC-----g~qL~~A 390 (537)
|| .++|-+.+|. ||- -..-|.|+..||-..+ .++-+|...--+||++...+|.= ...|...
T Consensus 92 lp~~iL~~~~~G~iNvH~SLLPr~RG--aAPIq~aI~~Gd~~TG-vTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~k 168 (307)
T COG0223 92 LPKEILDLPPYGCINLHPSLLPRYRG--AAPIQWAILNGDTETG-VTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDK 168 (307)
T ss_pred CCHHHHhcCcCCeEEecCccCccccC--ccHHHHHHHcCCcccc-eEEEEccccCCCcceeeeEEeccCCcccHHHHHHH
Confidence 22 2367777776 432 1235778999986655 58889999999999999888643 2455554
Q ss_pred HHHHH
Q 009355 391 MQIIE 395 (537)
Q Consensus 391 L~~I~ 395 (537)
|..+.
T Consensus 169 La~~g 173 (307)
T COG0223 169 LAELG 173 (307)
T ss_pred HHHHH
Confidence 44443
No 55
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=22.63 E-value=84 Score=25.95 Aligned_cols=20 Identities=40% Similarity=0.753 Sum_probs=15.9
Q ss_pred CCccHHHHHHHHHCCCEEEE
Q 009355 112 GFSSIEQALNTLRQGKFVIV 131 (537)
Q Consensus 112 ~~~~I~~Ai~alr~G~~VvV 131 (537)
.|+.++++.++|++|++|+|
T Consensus 8 ~~~D~~~i~~~l~~g~~Viv 27 (73)
T PF04472_consen 8 SFEDAREIVDALREGKIVIV 27 (73)
T ss_dssp SGGGHHHHHHHHHTT--EEE
T ss_pred CHHHHHHHHHHHHcCCEEEE
Confidence 57789999999999999976
No 56
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=22.30 E-value=46 Score=28.91 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCeeeeccCCcccccccccCCcE
Q 009355 449 IGAQILRDLGVRTMRLMTNNPAKFIGLKGYGLA 481 (537)
Q Consensus 449 igAQILrdLGV~kIrLLTNNP~K~~aL~g~GIe 481 (537)
.++|++|.+| .+|...+.++.|...++.+|..
T Consensus 5 ~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~ 36 (130)
T PF00107_consen 5 MAIQLAKAMG-AKVIATDRSEEKLELAKELGAD 36 (130)
T ss_dssp HHHHHHHHTT-SEEEEEESSHHHHHHHHHTTES
T ss_pred HHHHHHHHcC-CEEEEEECCHHHHHHHHhhccc
Confidence 4679999999 8888888899999999999944
No 57
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=22.18 E-value=2.1e+02 Score=25.95 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=39.3
Q ss_pred CchhHHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCEEee
Q 009355 253 AGHTEASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPISSI 305 (537)
Q Consensus 253 ~GhTEAaVdLarlAGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~ivsi 305 (537)
-.|+..++..++..|+...+++....++.+ .........+++..++|++-+
T Consensus 82 i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~--~~~~~~~~~i~~~~gip~LG~ 132 (134)
T cd03109 82 INHAFLTIEAARIKGIILNGVLGNVIVEKE--GLATLNVETIERLTGIPVLGI 132 (134)
T ss_pred HhHHHHHHHHHHhcCCceeEEEEccCCCcc--chhhhhHHHHHHhcCCCEEEe
Confidence 458889999999999999999988776522 222356788899999998753
No 58
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=21.83 E-value=2.2e+02 Score=28.86 Aligned_cols=47 Identities=26% Similarity=0.401 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCCeEEEEEecCCCCCCCCChHHHHHHHHHcCCCEE
Q 009355 257 EASVDLLVLAGLNPVSVLSAVVDPEDGSMSSLPSLRKLALEHSIPIS 303 (537)
Q Consensus 257 EAaVdLarlAGl~PaaVi~elv~~~dG~ma~~~~l~~fA~~h~L~iv 303 (537)
|.++.=.+..|..|..|++...+...|...+.+++.++|++||++++
T Consensus 136 ~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~ 182 (345)
T cd06450 136 EAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLH 182 (345)
T ss_pred HHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEE
Confidence 34443333456677666555444338999999999999999998765
No 59
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.56 E-value=1e+02 Score=26.11 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=18.0
Q ss_pred cHHHHHHHHHCCCEEEEEeC
Q 009355 115 SIEQALNTLRQGKFVIVVED 134 (537)
Q Consensus 115 ~I~~Ai~alr~G~~VvV~Dd 134 (537)
.++++..+|++|+.|||++.
T Consensus 38 kv~~~r~qlq~GeaVivwse 57 (72)
T COG3089 38 KVADVRRQLQSGEAVIVWSE 57 (72)
T ss_pred HHHHHHHHHhcCceEEEecc
Confidence 68899999999999999864
No 60
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=20.19 E-value=1.2e+02 Score=36.35 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=69.9
Q ss_pred eeEEEEEcCCCCHHHHHHHHHhCCceEEeecC-----HHHHHhcCCCCCCCCCCCCCCCCCceEEee---eccCCCcc-C
Q 009355 140 EGNLVMAASLTSPRHVAFMVKHGSGIVSVGMK-----EEDLQRLNLPLMSPEAENEDSSAPTFTITV---DAKFGTTT-G 210 (537)
Q Consensus 140 EgdLv~aAe~~T~e~vaFm~r~~~Glicvam~-----~~~~~rL~Lp~m~~~~~n~~~~~taFtVsV---Da~~gttT-G 210 (537)
+|+ |+-++..+|+.+..| +...|+|+--=. .-.++.|++|.++........-...-.|+| |..+|... |
T Consensus 385 ~g~-ILV~~~~~p~~~~~l-~~~~givt~~Gg~tSH~AilAR~lgIPavvg~~~~~~~l~~G~~v~v~~~Dg~~G~v~~~ 462 (795)
T PRK06464 385 PGD-VLVTDMTDPDWEPVM-KRASAIVTNRGGRTCHAAIIARELGIPAVVGTGNATEVLKDGQEVTVSCAEGDTGYVYEG 462 (795)
T ss_pred CCe-EEEECCCCHHHHHHH-HhheEEEEcCCCCcchHHHHHHHcCCCEEEccCcccceecCCCEEEEEeccCCCcEEEeC
Confidence 444 566889999999988 778898875322 237999999999886433344456678888 88766643 5
Q ss_pred CChhhHHHHHHHHcCCCCCCCCccCCCCCccceeccCCccccCchhHHHHHHHHHcCCCCeEEEE
Q 009355 211 VSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVLRRAGHTEASVDLLVLAGLNPVSVLS 275 (537)
Q Consensus 211 ISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~GGvl~R~GhTEAaVdLarlAGl~PaaVi~ 275 (537)
-+...+... .+ .++ ||+=+-|.+.-+.. + -+..++-.|..-+|.+.
T Consensus 463 ~~~~~~~~~--~~-------~~~--~g~~~~l~aNi~~~-------~-~~~~a~~~ga~GiGL~R 508 (795)
T PRK06464 463 LLEFEVEEV--SL-------EEM--PETPTKIMMNVGNP-------E-RAFDFAALPNDGVGLAR 508 (795)
T ss_pred Cchhhhhhh--hh-------hcC--CCcceEEEEcCCCH-------H-HHHHHHhcCCCeEeehh
Confidence 554322221 11 122 57766666554332 2 23455666666565443
Done!