Your job contains 1 sequence.
>009356
MEGHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDF
FNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVV
LPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPP
DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISG
LNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSFGPNFLEPVRPPPNLGNSAGG
QILPNVSYRPQHIFNNSHPQVFSNWGNQEAATPIIQQLHCSQQQSSSQLSQLSLQQIQIP
RQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTIP
TVPQSPQVAASPECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFEQQIEKQQKLQNG
SQSVSSTKEVAQTQEVQLQPHVFRKKVQLQDPSVSASEQDHLQVQTKSSPVVHPTCV
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009356
(537 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065190 - symbol:AT2G47310 species:3702 "Arabi... 619 3.1e-87 2
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399... 675 2.2e-66 1
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ... 675 2.2e-66 1
RGD|1565016 - symbol:Celf5 "CUGBP, Elav-like family membe... 319 2.7e-28 1
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 321 3.4e-28 2
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 316 1.0e-27 2
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 328 1.0e-27 1
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 326 1.9e-27 1
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 322 2.3e-27 2
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 316 3.2e-27 2
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 316 3.4e-27 2
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 317 3.8e-27 2
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 317 3.8e-27 2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 317 3.8e-27 2
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3... 316 5.3e-27 1
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 292 8.3e-27 3
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 314 8.5e-27 2
UNIPROTKB|F1NXF6 - symbol:BRUNOL6 "Uncharacterized protei... 319 1.2e-26 1
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 314 3.4e-26 1
MGI|MGI:1342295 - symbol:Celf1 "CUGBP, Elav-like family m... 312 5.0e-26 2
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 307 5.9e-26 2
UNIPROTKB|F1ND14 - symbol:CELF1 "CUGBP Elav-like family m... 314 5.9e-26 1
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 315 6.0e-26 2
UNIPROTKB|Q5F3T7 - symbol:CELF1 "CUGBP Elav-like family m... 314 6.3e-26 1
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 311 6.4e-26 2
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 311 6.5e-26 2
UNIPROTKB|Q92879 - symbol:CELF1 "CUGBP Elav-like family m... 311 6.7e-26 2
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 313 7.2e-26 1
TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-... 309 8.1e-26 1
UNIPROTKB|A7MB95 - symbol:CUGBP1 "Uncharacterized protein... 311 8.5e-26 2
RGD|1307721 - symbol:Celf1 "CUGBP, Elav-like family membe... 312 1.1e-25 1
UNIPROTKB|Q4QQT3 - symbol:Celf1 "CUGBP Elav-like family m... 312 1.1e-25 1
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 311 2.0e-25 1
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family... 297 2.8e-25 2
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 308 3.0e-25 1
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 308 3.0e-25 1
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 305 4.9e-25 1
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 307 1.1e-24 1
WB|WBGene00006807 - symbol:unc-75 species:6239 "Caenorhab... 300 1.3e-24 2
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m... 291 7.5e-24 1
UNIPROTKB|Q5R995 - symbol:CELF1 "CUGBP Elav-like family m... 297 8.2e-24 2
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m... 294 1.5e-23 1
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m... 294 1.5e-23 1
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"... 294 1.5e-23 1
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m... 295 1.6e-23 1
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m... 294 1.6e-23 1
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m... 294 1.7e-23 1
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m... 294 1.9e-23 1
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m... 294 1.9e-23 1
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ... 294 1.9e-23 1
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe... 291 2.0e-23 2
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ... 290 2.3e-23 2
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m... 291 2.5e-23 1
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m... 291 2.6e-23 1
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m... 291 3.3e-23 1
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m... 288 6.0e-23 1
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"... 276 1.5e-21 1
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 272 2.7e-21 1
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"... 276 2.8e-21 1
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m... 273 3.5e-21 1
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro... 276 3.7e-21 3
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 273 4.3e-21 1
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 262 7.1e-21 1
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 272 1.1e-20 3
UNIPROTKB|H9L0T2 - symbol:H9L0T2 "Uncharacterized protein... 233 8.8e-19 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 234 5.5e-18 1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 232 5.0e-17 1
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 232 5.9e-17 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 232 5.9e-17 1
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 232 5.9e-17 1
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 232 6.0e-17 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 231 7.7e-17 1
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 231 7.7e-17 1
UNIPROTKB|A1L544 - symbol:TNRC4 "Trinucleotide repeat con... 215 8.0e-17 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 231 8.3e-17 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 232 1.0e-16 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 228 1.1e-16 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 228 1.3e-16 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 225 1.4e-16 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 225 1.4e-16 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 228 1.5e-16 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 228 1.5e-16 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 228 1.7e-16 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 228 1.7e-16 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 224 1.8e-16 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 224 1.8e-16 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 228 1.9e-16 1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 228 1.9e-16 1
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 228 1.9e-16 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 228 2.2e-16 1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 228 2.2e-16 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 228 2.2e-16 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 228 2.3e-16 1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 228 2.3e-16 1
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 228 2.3e-16 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 228 2.4e-16 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 226 2.4e-16 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 228 2.4e-16 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 228 2.4e-16 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 223 2.5e-16 1
WARNING: Descriptions of 993 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 619 (223.0 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 152/333 (45%), Positives = 200/333 (60%)
Query: 9 ITDPPEFNPNSFSGNYCSWSSDDHR-HNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMP 67
I PP + + + + + +D+R F ++S +++ DQ ++ P F P P
Sbjct: 31 IHPPPPPHHHIAAVGFHKYPQNDNRDQRFNQPHYSGQQQNMIVDQSNNAPPPF---PPSP 87
Query: 68 FIG---RKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKD 124
G RKR + A D N G AKLYVAP+ +TATE DIR +FE++GNV E++LPKD
Sbjct: 88 CGGSSLRKRR-SQSATD--NADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKD 144
Query: 125 KRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREH----PVAPP 180
K TG++ YCF+K+ EE AI AL + FPGE +KVRFA+ ERE PV P
Sbjct: 145 KMTGERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLP 204
Query: 181 D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAI 238
D KLYV CL+KQT+K E+ EVFS YG IEDI++ D++K RG AFVQFS +EMALAAI
Sbjct: 205 DNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAI 264
Query: 239 SGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS----FGPNFLEPVRPPPNL 294
LNG FT+RGSDQPL+VR ADPKKPR GE R F TP F PN+ +P P
Sbjct: 265 KALNGLFTIRGSDQPLIVRFADPKKPRLGEQRST--FNTPPAMQHFDPNWHS--QPYPQW 320
Query: 295 GNS--AGGQILPN--VSYRPQHIFNNSHPQVFS 323
N A +++ + S +P H F + + Q S
Sbjct: 321 ENKEPAPPRVVQHHDFSSQPNH-FPHQNTQAVS 352
Score = 272 (100.8 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 63/181 (34%), Positives = 102/181 (56%)
Query: 360 PRQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTI 419
P QN+Q AVS++ K LH + N E+ Q S E+ S G + ++A
Sbjct: 344 PHQNTQ----AVSEVHKPLH-QDIPPANFEKHQKSETASVETRS--DGQKISSHSNAF-- 394
Query: 420 PTVPQSPQVAASPECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFEQQIEKQQKLQN 479
Q S ECDWSEHTCP+GNKYY++C TCES W+KP+EY ++E+ +++Q +LQ+
Sbjct: 395 ----HEDQNTVSSECDWSEHTCPNGNKYYFHCITCESTWEKPDEYSMYERWLKEQTRLQD 450
Query: 480 G---SQSVSSTKEVAQTQEVQLQPHVFRKKVQLQDPSVSASEQDH-LQVQTKSSPVVHPT 535
S +++ + A Q++ V ++ +LQ PS+S ++Q++ + V ++ V T
Sbjct: 451 EKIKSPPLNNESQEAIENSEQVESDVLQQNGELQQPSLSTADQENNVVVYPVTTLAVETT 510
Query: 536 C 536
C
Sbjct: 511 C 511
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 136/266 (51%), Positives = 179/266 (67%)
Query: 70 GRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQ 129
G RG +H DH N + KL++ VPRTATE+D+RPLFEEHG+V+EV L KD++TG+
Sbjct: 106 GSGRG-DHS--DHDNRNNY-VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGE 161
Query: 130 QQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLS 189
QQG CFVK+ EEA AIRAL+ Y PG I+VR+ADGERE A KL+V L+
Sbjct: 162 QQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLN 221
Query: 190 KQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRG 249
KQ + KEIEE+F+PYGH+ED++I++D ++QSRGC FV+FS RE ALAA+S L+G + MRG
Sbjct: 222 KQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRG 281
Query: 250 SDQPLVVRIADPKKPRTGELRGNYAFGTPSFGP--NFLEPVRPPPNLGNSAGGQILPNVS 307
+QPL++R ADPK+PR GE RG AFG P F P + +RP NL G + P+ S
Sbjct: 282 CEQPLIIRFADPKRPRPGESRGGPAFGGPGFSPRSDAALVIRPTANLDEPRGRHMPPD-S 340
Query: 308 YRPQHIFNNSHPQVFSNWGNQEAATP 333
+ P S P F+N+G+ P
Sbjct: 341 WHPSS--PRSAPHQFNNFGSDNPMAP 364
Score = 251 (93.4 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 96/312 (30%), Positives = 143/312 (45%)
Query: 235 LAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSFGPNFLE---PVRPP 291
L + GL F ++ + L + P + + G+L+ + G SFG N L PV P
Sbjct: 422 LQKLPGLPQNFPVQLQNNQLGQPLQGPAQ-QIGQLQVPQSMGPGSFGQNRLSGQLPVSQP 480
Query: 292 PNLGNSAGGQI-LPN-VSYRPQHIFNNSHPQVFSNWGNQEAATPXXXXXXXXXXXXXXXX 349
N++ + +P+ VS Q I H + SN Q P
Sbjct: 481 LMQQNASVSAVQVPSAVSNSMQAIPGQQH--LPSNVAPQMLQQPVQQMPSQAPQLLLQQQ 538
Query: 350 XXXXXXXXXXPRQNSQLSQQAVSDMQKQLHLRQSSTQ-NVEQQQNSHVIVSESESPRSGN 408
+ + Q SQQA+ +Q+QL L Q Q N+ QQ + +S +P + N
Sbjct: 539 AAL--------QSSYQSSQQAIYQLQQQLQLMQQQQQSNLNHQQPTQGQPVQSSNPGAPN 590
Query: 409 NPQTSASASTIPTVPQSPQVAASP-ECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLF 467
+ S I T+PQ A P C+W+EHT P+G KYYYN T ES+WDKPEEY+L+
Sbjct: 591 ----AIIPSNINTIPQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLY 646
Query: 468 EQQIEKQQK-----LQNGSQSVS----STKEVAQT----QEVQLQPHVFRKKVQLQDPSV 514
EQQ ++QQ+ LQ Q ++ + AQT Q VQ P + + Q+Q +
Sbjct: 647 EQQQQQQQQQKLLLLQQHQQKLAMQQLQSPPQAQTHPAMQPVQQIPQAQQGQQQMQ---M 703
Query: 515 SASEQDHLQVQT 526
E ++ Q+QT
Sbjct: 704 KQQELNYTQLQT 715
Score = 42 (19.8 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 10 TDPPEFNPNSFSGN 23
TD F P FSGN
Sbjct: 373 TDTATFRPQMFSGN 386
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 136/266 (51%), Positives = 179/266 (67%)
Query: 70 GRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQ 129
G RG +H DH N + KL++ VPRTATE+D+RPLFEEHG+V+EV L KD++TG+
Sbjct: 106 GSGRG-DHS--DHDNRNNY-VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGE 161
Query: 130 QQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLS 189
QQG CFVK+ EEA AIRAL+ Y PG I+VR+ADGERE A KL+V L+
Sbjct: 162 QQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLN 221
Query: 190 KQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRG 249
KQ + KEIEE+F+PYGH+ED++I++D ++QSRGC FV+FS RE ALAA+S L+G + MRG
Sbjct: 222 KQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRG 281
Query: 250 SDQPLVVRIADPKKPRTGELRGNYAFGTPSFGP--NFLEPVRPPPNLGNSAGGQILPNVS 307
+QPL++R ADPK+PR GE RG AFG P F P + +RP NL G + P+ S
Sbjct: 282 CEQPLIIRFADPKRPRPGESRGGPAFGGPGFSPRSDAALVIRPTANLDEPRGRHMPPD-S 340
Query: 308 YRPQHIFNNSHPQVFSNWGNQEAATP 333
+ P S P F+N+G+ P
Sbjct: 341 WHPSS--PRSAPHQFNNFGSDNPMAP 364
Score = 251 (93.4 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 96/312 (30%), Positives = 143/312 (45%)
Query: 235 LAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSFGPNFLE---PVRPP 291
L + GL F ++ + L + P + + G+L+ + G SFG N L PV P
Sbjct: 422 LQKLPGLPQNFPVQLQNNQLGQPLQGPAQ-QIGQLQVPQSMGPGSFGQNRLSGQLPVSQP 480
Query: 292 PNLGNSAGGQI-LPN-VSYRPQHIFNNSHPQVFSNWGNQEAATPXXXXXXXXXXXXXXXX 349
N++ + +P+ VS Q I H + SN Q P
Sbjct: 481 LMQQNASVSAVQVPSAVSNSMQAIPGQQH--LPSNVAPQMLQQPVQQMPSQAPQLLLQQQ 538
Query: 350 XXXXXXXXXXPRQNSQLSQQAVSDMQKQLHLRQSSTQ-NVEQQQNSHVIVSESESPRSGN 408
+ + Q SQQA+ +Q+QL L Q Q N+ QQ + +S +P + N
Sbjct: 539 AAL--------QSSYQSSQQAIYQLQQQLQLMQQQQQSNLNHQQPTQGQPVQSSNPGAPN 590
Query: 409 NPQTSASASTIPTVPQSPQVAASP-ECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLF 467
+ S I T+PQ A P C+W+EHT P+G KYYYN T ES+WDKPEEY+L+
Sbjct: 591 ----AIIPSNINTIPQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLY 646
Query: 468 EQQIEKQQK-----LQNGSQSVS----STKEVAQT----QEVQLQPHVFRKKVQLQDPSV 514
EQQ ++QQ+ LQ Q ++ + AQT Q VQ P + + Q+Q +
Sbjct: 647 EQQQQQQQQQKLLLLQQHQQKLAMQQLQSPPQAQTHPAMQPVQQIPQAQQGQQQMQ---M 703
Query: 515 SASEQDHLQVQT 526
E ++ Q+QT
Sbjct: 704 KQQELNYTQLQT 715
Score = 42 (19.8 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 10 TDPPEFNPNSFSGN 23
TD F P FSGN
Sbjct: 373 TDTATFRPQMFSGN 386
>RGD|1565016 [details] [associations]
symbol:Celf5 "CUGBP, Elav-like family member 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565016 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13207 GeneTree:ENSGT00560000076837 OrthoDB:EOG4RJG30 CTD:60680
IPI:IPI00914219 RefSeq:NP_001129075.1 UniGene:Rn.12319
ProteinModelPortal:D4A8V0 Ensembl:ENSRNOT00000061219 GeneID:314647
KEGG:rno:314647 UCSC:RGD:1565016 NextBio:668034 Uniprot:D4A8V0
Length = 395
Score = 319 (117.4 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 80/234 (34%), Positives = 127/234 (54%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +PR E+D++PLFE+ G + E+ + KD TG +G F+ + + A A A
Sbjct: 8 KLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKAQTA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L+KQ S++++ +F P+G I++
Sbjct: 68 LHEQKTLPGMARPIQVKPADSENRG--GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDEC 125
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT---- 266
++R S+GCAFV+FS A AAI L+G+ TM G+ LVV+ AD K RT
Sbjct: 126 TVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRM 185
Query: 267 GELRGNYAFGTPS----FGPN--FLEPV-RPPPNLGNSAGGQILPNVSYRPQHI 313
++ G TPS F P + + + + + +++G + P V++ P HI
Sbjct: 186 QQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFPPCHI 239
Score = 153 (58.9 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 44/127 (34%), Positives = 65/127 (51%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA D N G KL+V + + +EED+ LF+ G + E + + G +G FVK
Sbjct: 85 PA-DSENRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVK 142
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F+ EA AI AL+G PG +S+ V+FAD ++E + ++ VG L T +
Sbjct: 143 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQM-VGQLGILTPSLTL 201
Query: 198 EEVFSPY 204
FSPY
Sbjct: 202 P--FSPY 206
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 321 (118.1 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 70/175 (40%), Positives = 107/175 (61%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +P++ EE+I+ LF N+ V L K+K T + QG FV EEA AI
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ F G +++V++AD E+E + KL+VG L + +++I E+F P+G +EDI
Sbjct: 64 LHNSKKFQGVLNNLQVKYADSEQEKLAS---KLFVGMLPRSYEEEQIRELFEPHGVVEDI 120
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I+R +S+GC F++F +RE AL+AI+ LNG + GS PLVV+ AD +K +
Sbjct: 121 CILRGPNSESKGCGFIKFDNRESALSAIATLNG-MKLDGSPNPLVVKFADTEKDK 174
Score = 131 (51.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNA 147
+ +KL+V +PR+ EE IR LFE HG V ++ + + + + +G F+KF E A +A
Sbjct: 89 LASKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNS-ESKGCGFIKFDNRESALSA 147
Query: 148 IRALNGHYIFPGEQASIKVRFADGERE 174
I LNG + G + V+FAD E++
Sbjct: 148 IATLNGMKL-DGSPNPLVVKFADTEKD 173
Score = 56 (24.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 172 EREHPVAPP-DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFS 229
++ V P L+V + S ++ +F YG + + D+ S+G FV +
Sbjct: 393 KKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYD 452
Query: 230 HREMALAAISGLNG 243
+ A AIS L+G
Sbjct: 453 NPASANLAISNLHG 466
Score = 48 (22.0 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 361 RQNSQLSQQAVSDMQ-KQLHLRQSSTQNVEQQQNSH 395
++ Q QQ MQ +Q +Q Q QQQ SH
Sbjct: 174 KKKKQKQQQIQIQMQQRQQQQQQQQQQPSHQQQQSH 209
Score = 47 (21.6 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 488 KEVAQTQEVQLQPHVFRKKVQLQDPSVSASEQDHLQ-VQTK-SSPVVH 533
K+ Q ++Q+Q +++ Q Q PS +Q H Q Q++ PVV+
Sbjct: 177 KQKQQQIQIQMQQRQQQQQQQQQQPS-HQQQQSHQQSFQSQYQQPVVN 223
Score = 44 (20.5 bits), Expect = 8.8e-28, Sum P(2) = 8.8e-28
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQNSH 395
+ + +Q +Q Q+ RQ Q +QQQ SH
Sbjct: 171 EKDKKKKQKQQQIQIQMQQRQQQQQQ-QQQQPSH 203
Score = 42 (19.8 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 469 QQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQDPSV 514
QQ ++QQ+ Q Q S ++ Q+Q Q + F K+ Q P +
Sbjct: 191 QQQQQQQQQQPSHQQQQSHQQSFQSQYQQPVVNQFPPKMN-QQPFI 235
Score = 40 (19.1 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 472 EKQQKLQNGSQSVSSTKEVAQTQ--EVQLQPHVFRKKVQLQDPSVS 515
+KQQ++Q Q ++ Q Q Q Q H + Q Q P V+
Sbjct: 178 QKQQQIQIQMQQRQQQQQQQQQQPSHQQQQSHQQSFQSQYQQPVVN 223
Score = 38 (18.4 bits), Expect = 3.7e-27, Sum P(2) = 3.7e-27
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 452 ETCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQ 499
+T + + K ++ + Q ++QQ+ Q Q S ++ + Q Q Q
Sbjct: 169 DTEKDKKKKQKQQQIQIQMQQRQQQQQQQQQQPSHQQQQSHQQSFQSQ 216
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 316 (116.3 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 77/203 (37%), Positives = 113/203 (55%)
Query: 70 GRKRGFNHPAPDHINDSGIPAK------LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPK 123
G G +H +P N S IP K L++ +PR E+D++PLFEE G + E+ + K
Sbjct: 31 GHMNGLSH-SPG--NPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
Query: 124 DKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKL 183
D+ TG +G F+ + E A A AL+ PG I+V+ AD E KL
Sbjct: 88 DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGD----RKL 143
Query: 184 YVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A AAI+ L+G
Sbjct: 144 FVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHG 203
Query: 244 TFTMRGSDQPLVVRIADPKKPRT 266
+ TM G+ LVV+ AD K RT
Sbjct: 204 SQTMPGASSSLVVKFADTDKERT 226
Score = 43 (20.2 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 292 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 324
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 328 (120.5 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 88/263 (33%), Positives = 136/263 (51%)
Query: 64 QPMPFIGRKRGFNHPA--PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
QP P G P PD + D KL+V +PR E+D++PLFE+ G + E+ +
Sbjct: 18 QPRPSPVGSSGPEPPGGQPDGMKDLDA-IKLFVGQIPRNLDEKDLKPLFEQFGRIYELTV 76
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
KD TG +G F+ + + A A AL+ PG I+V+ AD E
Sbjct: 77 LKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRG--GRDR 134
Query: 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241
KL+VG L+KQ S++++ +F P+G I++ ++R S+GCAFV+FS A AAI L
Sbjct: 135 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 194
Query: 242 NGTFTMRGSDQPLVVRIADPKKPRT----GELRGNYAFGTPS----FGPN--FLEPV-RP 290
+G+ TM G+ LVV+ AD K RT ++ G TPS F P + + + +
Sbjct: 195 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQ 254
Query: 291 PPNLGNSAGGQILPNVSYRPQHI 313
+ +++G + P V++ P HI
Sbjct: 255 QTTVLSTSGSYLSPGVAFSPCHI 277
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 326 (119.8 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 88/263 (33%), Positives = 136/263 (51%)
Query: 64 QPMPFIGRKRGFNHPA--PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
QP P G P PD + D KL+V +PR E+D++PLFE+ G + E+ +
Sbjct: 18 QPRPSPVGSSGPEPPGGQPDGMKDLDA-IKLFVGQIPRHLDEKDLKPLFEQFGRIYELTV 76
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
KD TG +G F+ + + A A AL+ PG I+V+ AD E
Sbjct: 77 LKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRG--GRDR 134
Query: 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241
KL+VG L+KQ S++++ +F P+G I++ ++R S+GCAFV+FS A AAI L
Sbjct: 135 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 194
Query: 242 NGTFTMRGSDQPLVVRIADPKKPRT----GELRGNYAFGTPS----FGPN--FLEPV-RP 290
+G+ TM G+ LVV+ AD K RT ++ G TPS F P + + + +
Sbjct: 195 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQ 254
Query: 291 PPNLGNSAGGQILPNVSYRPQHI 313
+ +++G + P V++ P HI
Sbjct: 255 QTTVLSTSGSYLSPGVAFSPCHI 277
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 322 (118.4 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 75/203 (36%), Positives = 119/203 (58%)
Query: 66 MPFIGRKRGFNHPAPDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKD 124
+P +G + N DH + I + K++V +PRT +E+ +R LFE +G V E+ + +D
Sbjct: 30 VPALGGSKKMNGSL-DHPDQPDIDSIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRD 88
Query: 125 KRTG--QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDK 182
+ Q +G CFV + + A A AL+ I PG I+++ AD E+ + V K
Sbjct: 89 RSQNPPQSKGCCFVTYYTRKSALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDR-K 147
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLN 242
L+VG +SK+ ++ +I +FSPYG IE+ I+R SRGCAFV F+ R+MA +AI ++
Sbjct: 148 LFVGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMH 207
Query: 243 GTFTMRGSDQPLVVRIADPKKPR 265
+ TM G P+VV+ AD +K +
Sbjct: 208 QSQTMEGCSSPIVVKFADTQKDK 230
Score = 245 (91.3 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 66/198 (33%), Positives = 103/198 (52%)
Query: 117 IEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP 176
I V+ + + Q +G CFV + + A A AL+ I PG I+++ AD E+ +
Sbjct: 83 INVLRDRSQNPPQSKGCCFVTYYTRKSALEAQNALHNMKILPGMHHPIQMKPADSEKNNA 142
Query: 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALA 236
V KL+VG +SK+ ++ +I +FSPYG IE+ I+R SRGCAFV F+ R+MA +
Sbjct: 143 VEDR-KLFVGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQS 201
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPR-----------------TGELRGNYAFGTPS 279
AI ++ + TM G P+VV+ AD +K + + GN G S
Sbjct: 202 AIKSMHQSQTMEGCSSPIVVKFADTQKDKEQKRIAQQLQQQMQQLNAASMWGNLT-GLNS 260
Query: 280 FGPNFLEPVRPPPNLGNS 297
GP +L ++ + GN+
Sbjct: 261 LGPQYLALLQQSASSGNA 278
Score = 145 (56.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/107 (32%), Positives = 60/107 (56%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + S+ ++ E+F PYG + +I ++RD + QS+GC
Sbjct: 40 NGSLDHPDQPDIDSIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGC 99
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV + R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 100 CFVTYYTRKSALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDR 146
Score = 44 (20.5 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 366 LSQQAVSDMQKQLHLRQSS--TQNVEQQQNSHVIVSESESPRSGN 408
L+Q A S +Q+ S +Q++ QQN S+ E P N
Sbjct: 407 LTQAAYSGIQQYAAAALPSLYSQSLLSQQNVSAAGSQKEGPEGAN 451
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 316 (116.3 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 77/203 (37%), Positives = 113/203 (55%)
Query: 70 GRKRGFNHPAPDHINDSGIPAK------LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPK 123
G G +H +P N S IP K L++ +PR E+D++PLFEE G + E+ + K
Sbjct: 31 GHMNGLSH-SPG--NPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
Query: 124 DKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKL 183
D+ TG +G F+ + E A A AL+ PG I+V+ AD E KL
Sbjct: 88 DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGD----RKL 143
Query: 184 YVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A AAI+ L+G
Sbjct: 144 FVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHG 203
Query: 244 TFTMRGSDQPLVVRIADPKKPRT 266
+ TM G+ LVV+ AD K RT
Sbjct: 204 SQTMPGASSSLVVKFADTDKERT 226
Score = 43 (20.2 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 292 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 324
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 316 (116.3 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 77/203 (37%), Positives = 113/203 (55%)
Query: 70 GRKRGFNHPAPDHINDSGIPAK------LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPK 123
G G +H +P N S IP K L++ +PR E+D++PLFEE G + E+ + K
Sbjct: 31 GHMNGLSH-SPG--NPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
Query: 124 DKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKL 183
D+ TG +G F+ + E A A AL+ PG I+V+ AD E KL
Sbjct: 88 DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGD----RKL 143
Query: 184 YVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A AAI+ L+G
Sbjct: 144 FVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHG 203
Query: 244 TFTMRGSDQPLVVRIADPKKPRT 266
+ TM G+ LVV+ AD K RT
Sbjct: 204 SQTMPGASSSLVVKFADTDKERT 226
Score = 43 (20.2 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 292 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 324
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 317 (116.6 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 79/210 (37%), Positives = 116/210 (55%)
Query: 70 GRKRGFNHPAPDHINDSGIPAK------LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPK 123
G G +H +P N S IP K L++ +PR E+D++PLFEE G + E+ + K
Sbjct: 31 GHMNGLSH-SPG--NPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
Query: 124 DKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVA----P 179
D+ TG +G F+ + E A A AL+ PG I+V+ AD E + P
Sbjct: 88 DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQP 147
Query: 180 PD---KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALA 236
P KL+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A A
Sbjct: 148 PSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA 207
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPRT 266
AI+ L+G+ TM G+ LVV+ AD K RT
Sbjct: 208 AINALHGSQTMPGASSSLVVKFADTDKERT 237
Score = 43 (20.2 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 303 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 335
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 317 (116.6 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 79/210 (37%), Positives = 116/210 (55%)
Query: 70 GRKRGFNHPAPDHINDSGIPAK------LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPK 123
G G +H +P N S IP K L++ +PR E+D++PLFEE G + E+ + K
Sbjct: 31 GHMNGLSH-SPG--NPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
Query: 124 DKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVA----P 179
D+ TG +G F+ + E A A AL+ PG I+V+ AD E + P
Sbjct: 88 DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQP 147
Query: 180 PD---KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALA 236
P KL+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A A
Sbjct: 148 PSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA 207
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPRT 266
AI+ L+G+ TM G+ LVV+ AD K RT
Sbjct: 208 AINALHGSQTMPGASSSLVVKFADTDKERT 237
Score = 43 (20.2 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 303 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 335
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 317 (116.6 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 79/210 (37%), Positives = 116/210 (55%)
Query: 70 GRKRGFNHPAPDHINDSGIPAK------LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPK 123
G G +H +P N S IP K L++ +PR E+D++PLFEE G + E+ + K
Sbjct: 31 GHMNGLSH-SPG--NPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
Query: 124 DKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVA----P 179
D+ TG +G F+ + E A A AL+ PG I+V+ AD E + P
Sbjct: 88 DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQP 147
Query: 180 PD---KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALA 236
P KL+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A A
Sbjct: 148 PSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA 207
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPRT 266
AI+ L+G+ TM G+ LVV+ AD K RT
Sbjct: 208 AINALHGSQTMPGASSSLVVKFADTDKERT 237
Score = 43 (20.2 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 303 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 335
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 316 (116.3 bits), Expect = 5.3e-27, P = 5.3e-27
Identities = 86/257 (33%), Positives = 134/257 (52%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V VP+ TE + LF E V EV + K+K T +G CF+ E+A I +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 151 LNGHYIFPGEQASIKVRFADGEREH------PVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
+ PG + ++V++ADGE E P KL+VG L K S+ E++ +FS Y
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEY 132
Query: 205 GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
G I+D+ I+R L+ S+GC F+++ +E A+AA+ LNG M G++ PL+V+ AD +K
Sbjct: 133 GTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKE 192
Query: 265 RTG----ELRGNYAFGTPS----FGPNFLEPVRPPPNLG-NSAG--GQILPNVSYRPQHI 313
R +++ + + P FG + V P G + G G +LP + + QH
Sbjct: 193 RQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGTYGYMLPPI--QTQHA 250
Query: 314 FNNSHPQVFSNWGNQEA 330
F+N + N GN A
Sbjct: 251 FHNV---ISPNQGNGRA 264
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 292 (107.8 bits), Expect = 8.3e-27, Sum P(3) = 8.3e-27
Identities = 66/177 (37%), Positives = 106/177 (59%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL++ +PR E+D++P+FE++G + E+ + KDK TG +G F+ + E A A A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ + G I+V+ AD E KL+VG L KQ S +++ ++F P+G I++
Sbjct: 68 LHYSSGYSGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDEC 124
Query: 211 FIVRDELKQSR-GCAFVQF-SHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++R S+ GCAFV+F SH E A +AI+ L+G+ T+ G+ LVV+ AD +K R
Sbjct: 125 TVLRGPDGTSKAGCAFVKFQSHSE-AQSAINSLHGSRTLPGASSSLVVKFADTEKER 180
Score = 149 (57.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 37/107 (34%), Positives = 55/107 (51%)
Query: 74 GFNHPAPDHINDS---GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P DS G KL+V + + ++ED+R +FE G + E + + +
Sbjct: 76 GMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSK 135
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPV 177
G FVKF EA +AI +L+G PG +S+ V+FAD E+E V
Sbjct: 136 AGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVKFADTEKERGV 182
Score = 74 (31.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 168 FADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCA 224
F+ RE P +++ L ++ + E+ ++F P+G++ +F+ R QS+
Sbjct: 343 FSQCVREANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDR-ATNQSKCFG 401
Query: 225 FVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
FV F + A AI +NG F + G + L V++ PK
Sbjct: 402 FVSFDNPASAQTAIQAMNG-FQI-GMKR-LKVQLKRPK 436
Score = 57 (25.1 bits), Expect = 8.3e-27, Sum P(3) = 8.3e-27
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQ--NSHVIVSESESPRSGNNPQTSASASTI 419
++ +L QQ Q Q +L +++ ++Q N+ I++ +P SG N + +A+ +
Sbjct: 208 KDQELVQQQALVAQAQ-YLSPAASMQIQQMAALNASGIIATPITPPSGANTPPTLAATPV 266
Query: 420 PTVPQ 424
+PQ
Sbjct: 267 SALPQ 271
Score = 39 (18.8 bits), Expect = 8.3e-27, Sum P(3) = 8.3e-27
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 420 PTVPQSPQVAASPECDWSEHTCPDG-NKYYYN 450
PT+ Q+ + +C +T P+G N + Y+
Sbjct: 332 PTLISQQQLQSFSQCVREANTGPEGCNVFIYH 363
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 314 (115.6 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 71/188 (37%), Positives = 107/188 (56%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
P DH D+ KL+V +PR E+D++PLFEE G + E+ + KD+ TG +G F+
Sbjct: 39 PMKDH--DA---IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
+ + A A AL+ PG I+V+ A E KL+VG L KQ ++++
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+F P+GHIE+ ++R S+GCAFV+F + A AAI GL+G+ TM G+ LVV+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVK 210
Query: 258 IADPKKPR 265
+AD + R
Sbjct: 211 LADTDRER 218
Score = 39 (18.8 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 19/69 (27%), Positives = 27/69 (39%)
Query: 383 SSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQSPQVAASPECDWSEHTCP 442
S T Q S + + SP P A AST Q P +A P+ + P
Sbjct: 320 SLTPQSNGQPGSDTLYNNGVSPYPAAYPSAYAPAST--AFSQQP--SALPQ---QQREGP 372
Query: 443 DG-NKYYYN 450
+G N + Y+
Sbjct: 373 EGCNLFIYH 381
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 319 (117.4 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 77/202 (38%), Positives = 110/202 (54%)
Query: 70 GRKRGFNHPAPDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
GR G +HP P I A KL+V +PR E D++PLFEE G + E+ + KD+ TG
Sbjct: 28 GRVNGLSHP-PGAIAMKDHDAIKLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTG 86
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADG--EREHPVAPPD--KLY 184
+G F+ + + A A AL+ PG ++ G + PP+ KL+
Sbjct: 87 MHKGCAFLTYCARDSALKAQSALHEQKTLPGVSDGRELGRGLGWPPADSSALPPEDRKLF 146
Query: 185 VGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGT 244
VG L KQ S+ ++ +F P+G IE+ I+R S+GCAFV++S A AAIS L+G+
Sbjct: 147 VGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSLHGS 206
Query: 245 FTMRGSDQPLVVRIADPKKPRT 266
TM G+ LVV+ AD K RT
Sbjct: 207 QTMPGASSSLVVKFADTDKERT 228
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 314 (115.6 bits), Expect = 3.4e-26, P = 3.4e-26
Identities = 71/188 (37%), Positives = 107/188 (56%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
P DH D+ KL+V +PR E+D++PLFEE G + E+ + KD+ TG +G F+
Sbjct: 39 PMKDH--DA---IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
+ + A A AL+ PG I+V+ A E KL+VG L KQ ++++
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+F P+GHIE+ ++R S+GCAFV+F + A AAI GL+G+ TM G+ LVV+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVK 210
Query: 258 IADPKKPR 265
+AD + R
Sbjct: 211 LADTDRER 218
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 312 (114.9 bits), Expect = 5.0e-26, Sum P(2) = 5.0e-26
Identities = 71/188 (37%), Positives = 111/188 (59%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPRT +E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 6 DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVT 65
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ + PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 66 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDI 124
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FS +G IE+ I+R SRGCAFV F+ R MA AI ++ TM G P+VV+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 185 FADTQKDK 192
Score = 146 (56.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + S+K++ E+F YG + +I I+RD + QS+GC
Sbjct: 2 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
Score = 110 (43.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA N++ KL++ + + TE DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
FT A AI+A++ G + + V+FAD +++
Sbjct: 155 FTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 69 (29.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 391 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 449 YDNPVSAQAAIQSMNG 464
Score = 39 (18.8 bits), Expect = 5.0e-26, Sum P(2) = 5.0e-26
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 383 SSTQNVEQQQNSHVIVSESES--PRSGNNPQTSASASTIP 420
S+ QN N+ S S SG++P +S+S S P
Sbjct: 272 SAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNP 311
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 307 (113.1 bits), Expect = 5.9e-26, Sum P(2) = 5.9e-26
Identities = 66/175 (37%), Positives = 101/175 (57%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL++ +PR E+D++P+FE+ G + E+ + KDK TG +G F+ + E A A A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L KQ S ++ ++F P+G IE+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGRGD----RKLFVGMLGKQLSDADVRKMFEPFGSIEEC 123
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++R S+GCAFV++ A AAIS L+G+ T+ G+ LVV+ AD +K R
Sbjct: 124 TVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKER 178
Score = 133 (51.9 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 36/106 (33%), Positives = 55/106 (51%)
Query: 74 GFNHPAPDHINDS-GI-PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
G N P DS G KL+V + + ++ D+R +FE G++ E + + G +
Sbjct: 76 GMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGP-DGASK 134
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPV 177
G FVK+ EA AI AL+G PG +S+ V+FAD E+E +
Sbjct: 135 GCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKERGI 180
Score = 76 (31.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 172 EREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFS 229
+RE P +++ L ++ + E+ ++F P+G++ +F+ R QS+ FV F
Sbjct: 360 QREGPEGC--NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDR-ATNQSKCFGFVSFD 416
Query: 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+ A AAI +NG F + G + L V++ PK
Sbjct: 417 NPASAQAAIQAMNG-FQI-GMKR-LKVQLKRPK 446
Score = 39 (18.8 bits), Expect = 5.9e-26, Sum P(2) = 5.9e-26
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 366 LSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSES--ESPRSGNNPQTSASASTIPTVP 423
+ QQA+ + + +L +T Q Q + S +P + P S+ ST PT+
Sbjct: 211 VQQQAL--VAQSAYLSPVATVAAVQMQQLAALNPSSIIATPIASITP--SSGTSTPPTIA 266
Query: 424 QSPQVAASP 432
+P A P
Sbjct: 267 ATPVPALPP 275
Score = 37 (18.1 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 464 YLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQL 498
Y + Q + +QQ L S +S VA Q QL
Sbjct: 203 YNAYTQALVQQQALVAQSAYLSPVATVAAVQMQQL 237
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 314 (115.6 bits), Expect = 5.9e-26, P = 5.9e-26
Identities = 72/188 (38%), Positives = 111/188 (59%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPR+ E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 6 DHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 65
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ I PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 66 FYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCNENDI 124
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FSP+G IE+ I+R SRGCAFV F+ R MA AI ++ TM G P+VV+
Sbjct: 125 RVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVK 184
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 185 FADTQKDK 192
Score = 140 (54.3 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + +K++ E+F YG + +I ++RD + QS+GC
Sbjct: 2 NGTLDHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDR 108
Score = 107 (42.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA N++ KL++ + + E DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
FT A AI+A++ G + I V+FAD +++
Sbjct: 155 FTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 191
Score = 69 (29.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 390 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 447
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 448 YDNPVSAQAAIQSMNG 463
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 315 (115.9 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
Identities = 74/189 (39%), Positives = 106/189 (56%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
P DH D+ KL++ +PR E+D+RPLFEE G + E+ + KD+ TG +G F+
Sbjct: 40 PMKDH--DA---IKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLT 94
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
+ E A A AL+ PG I+V+ AD E KL+VG L+KQ + ++
Sbjct: 95 YCARESALKAQTALHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQCEDDV 151
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+F +G IE+ I+R S+GCAFV++S A AAIS L+G+ TM G+ LVV+
Sbjct: 152 RRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVK 211
Query: 258 IADPKKPRT 266
AD K RT
Sbjct: 212 FADTDKERT 220
Score = 151 (58.2 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 36/107 (33%), Positives = 55/107 (51%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + E+D+R LFE G++ E + + G
Sbjct: 116 GMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGP-DGNS 174
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPV 177
+G FVK++ EA AI AL+G PG +S+ V+FAD ++E +
Sbjct: 175 KGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFADTDKERTI 221
Score = 38 (18.4 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 403 SPRSGNNPQTSASASTIPTVPQSP 426
+P SG + +A T+ ++P SP
Sbjct: 292 TPTSGGSTPPGITAPTVTSIP-SP 314
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 314 (115.6 bits), Expect = 6.3e-26, P = 6.3e-26
Identities = 72/188 (38%), Positives = 111/188 (59%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPR+ E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 6 DHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 65
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ I PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 66 FYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCNENDI 124
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FSP+G IE+ I+R SRGCAFV F+ R MA AI ++ TM G P+VV+
Sbjct: 125 RVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVK 184
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 185 FADTQKDK 192
Score = 140 (54.3 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + +K++ E+F YG + +I ++RD + QS+GC
Sbjct: 2 NGTLDHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDR 108
Score = 107 (42.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA N++ KL++ + + E DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
FT A AI+A++ G + I V+FAD +++
Sbjct: 155 FTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 191
Score = 69 (29.3 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 394 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 451
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 452 YDNPVSAQAAIQSMNG 467
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 311 (114.5 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 77/227 (33%), Positives = 122/227 (53%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
P+P + I K++V +PR E D R LFE++G+V + +DK T +G CFV
Sbjct: 45 PSPSEPDTDAI--KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F ++A A AL+ + G ++++ AD E + KL++G LSK+ +++ +
Sbjct: 103 FYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNE----RKLFIGQLSKKHNEENL 158
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
E+F+ +GHIED ++RD+ +SRGCAFV F++R A+ A ++ + TM G PLVV+
Sbjct: 159 REIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVK 218
Query: 258 IADPKKPR---TGELRGNYAFGTPSFGPNFLEPVRPPPNLGNSAGGQ 301
AD +K + T + G+P G L P L GGQ
Sbjct: 219 FADTQKDKDVKTKSMITGSGAGSPKGGAASLLQNLNPALLQQLGGGQ 265
Score = 47 (21.6 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 369 QAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNNP---QTSASASTIPTVPQS 425
QAV+ + ++ +Q Q +QQQN I+ +P GN Q A T+ +
Sbjct: 268 QAVASLLSLINGQQGQQQQHQQQQNVLGILGTG-NPLLGNPAMAAQNQFDAITMAQIAHQ 326
Query: 426 PQVAA 430
Q+ A
Sbjct: 327 QQMLA 331
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 311 (114.5 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
Identities = 71/188 (37%), Positives = 111/188 (59%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPRT +E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 33 DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 92
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ + PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 93 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDI 151
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FS +G IE+ I+R SRGCAFV F+ R MA AI ++ TM G P+VV+
Sbjct: 152 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 211
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 212 FADTQKDK 219
Score = 145 (56.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + S+K++ E+F YG + +I ++RD + QS+GC
Sbjct: 29 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 88
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 89 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
Score = 110 (43.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA N++ KL++ + + TE DIR +F G + E + + G +G FV
Sbjct: 123 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 181
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
FT A AI+A++ G + + V+FAD +++
Sbjct: 182 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218
Score = 69 (29.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 418 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 475
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 476 YDNPVSAQAAIQSMNG 491
Score = 42 (19.8 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 383 SSTQNVEQQQNSHVIVSESES--PRSGNNPQTSASASTIP 420
S+ QN N+ S S SG++P +S+S+S P
Sbjct: 299 SAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSSSVNP 338
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 311 (114.5 bits), Expect = 6.7e-26, Sum P(2) = 6.7e-26
Identities = 71/188 (37%), Positives = 111/188 (59%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPRT +E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 6 DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 65
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ + PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 66 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDI 124
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FS +G IE+ I+R SRGCAFV F+ R MA AI ++ TM G P+VV+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 185 FADTQKDK 192
Score = 145 (56.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + S+K++ E+F YG + +I ++RD + QS+GC
Sbjct: 2 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
Score = 110 (43.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA N++ KL++ + + TE DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
FT A AI+A++ G + + V+FAD +++
Sbjct: 155 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 69 (29.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 391 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 449 YDNPVSAQAAIQSMNG 464
Score = 39 (18.8 bits), Expect = 6.7e-26, Sum P(2) = 6.7e-26
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 383 SSTQNVEQQQNSHVIVSESES--PRSGNNPQTSASASTIP 420
S+ QN N+ S S SG++P +S+S S P
Sbjct: 272 SAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNP 311
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 313 (115.2 bits), Expect = 7.2e-26, P = 7.2e-26
Identities = 71/188 (37%), Positives = 107/188 (56%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
P DH D+ KL+V +PR E+D++PLFEE G + E+ + KD+ TG +G F+
Sbjct: 39 PMKDH--DA---IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
+ + A A AL+ PG I+V+ A E KL+VG L KQ ++++
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+F P+GHIE+ ++R S+GCAFV+F + A AAI GL+G+ TM G+ LVV+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVK 210
Query: 258 IADPKKPR 265
+AD + R
Sbjct: 211 LADTDRER 218
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 309 (113.8 bits), Expect = 8.1e-26, P = 8.1e-26
Identities = 67/182 (36%), Positives = 105/182 (57%)
Query: 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEE 143
N+ KL+V +P+ +E + LF+E V EV + KDK T +G CF+ EE
Sbjct: 12 NEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREE 71
Query: 144 AGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSP 203
A + A + PG + ++V++ADGE E KL+VG L K S+ E++ +FS
Sbjct: 72 ADKLVNACHNKKTLPGANSLLQVKYADGELERL---EHKLFVGMLPKNVSEAEVQSLFSK 128
Query: 204 YGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263
YG I+D+ I+R + S+GCAF+++ +E A++A+ +NG M GS PLVV+ AD ++
Sbjct: 129 YGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTER 188
Query: 264 PR 265
R
Sbjct: 189 ER 190
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 311 (114.5 bits), Expect = 8.5e-26, Sum P(2) = 8.5e-26
Identities = 71/188 (37%), Positives = 111/188 (59%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPRT +E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 6 DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 65
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ + PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 66 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDI 124
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FS +G IE+ I+R SRGCAFV F+ R MA AI ++ TM G P+VV+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 185 FADTQKDK 192
Score = 145 (56.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + S+K++ E+F YG + +I ++RD + QS+GC
Sbjct: 2 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
Score = 110 (43.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA N++ KL++ + + TE DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
FT A AI+A++ G + + V+FAD +++
Sbjct: 155 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 69 (29.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 391 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 449 YDNPVSAQAAIQSMNG 464
Score = 38 (18.4 bits), Expect = 8.5e-26, Sum P(2) = 8.5e-26
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 406 SGNNPQTSASASTIP 420
SG++P +S+S+S P
Sbjct: 297 SGSSPSSSSSSSVNP 311
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 312 (114.9 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 71/188 (37%), Positives = 111/188 (59%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPRT +E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 6 DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVT 65
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ + PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 66 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDI 124
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FS +G IE+ I+R SRGCAFV F+ R MA AI ++ TM G P+VV+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 185 FADTQKDK 192
Score = 146 (56.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + S+K++ E+F YG + +I I+RD + QS+GC
Sbjct: 2 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
Score = 110 (43.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA N++ KL++ + + TE DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
FT A AI+A++ G + + V+FAD +++
Sbjct: 155 FTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 69 (29.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 392 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 449
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 450 YDNPVSAQAAIQSMNG 465
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 312 (114.9 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 71/188 (37%), Positives = 111/188 (59%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPRT +E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 6 DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVT 65
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ + PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 66 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDI 124
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FS +G IE+ I+R SRGCAFV F+ R MA AI ++ TM G P+VV+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 185 FADTQKDK 192
Score = 146 (56.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + S+K++ E+F YG + +I I+RD + QS+GC
Sbjct: 2 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
Score = 110 (43.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA N++ KL++ + + TE DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
FT A AI+A++ G + + V+FAD +++
Sbjct: 155 FTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 69 (29.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 392 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 449
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 450 YDNPVSAQAAIQSMNG 465
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 311 (114.5 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 71/188 (37%), Positives = 111/188 (59%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPRT +E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 33 DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 92
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ + PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 93 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDI 151
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FS +G IE+ I+R SRGCAFV F+ R MA AI ++ TM G P+VV+
Sbjct: 152 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 211
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 212 FADTQKDK 219
Score = 145 (56.1 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + S+K++ E+F YG + +I ++RD + QS+GC
Sbjct: 29 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 88
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 89 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
Score = 110 (43.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA N++ KL++ + + TE DIR +F G + E + + G +G FV
Sbjct: 123 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 181
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
FT A AI+A++ G + + V+FAD +++
Sbjct: 182 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218
Score = 69 (29.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 419 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 476
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 477 YDNPVSAQAAIQSMNG 492
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 297 (109.6 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 63/175 (36%), Positives = 101/175 (57%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL++ +PR E+D++P+FE+ G + E+ + KDK TG +G F+ + E A A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L KQ + +++ +F +G+I++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRRMFETFGNIDEC 124
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++R S+GCAFV+F A AAI+ L+G+ T+ G+ LVV+ AD +K R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
Score = 159 (61.0 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 39/104 (37%), Positives = 54/104 (51%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + T+ED+R +FE GN+ E + + G
Sbjct: 76 GMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGP-DGTS 134
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
+G FVKF EA AI AL+G PG +S+ V+FAD E+E
Sbjct: 135 KGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178
Score = 78 (32.5 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 172 EREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFS 229
+RE P +++ L ++ + EI ++F P+G++ +F+ R QS+ FV F
Sbjct: 370 QREGPEGC--NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDR-ATNQSKCFGFVSFD 426
Query: 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+ A AAI +NG F + G + L V++ PK
Sbjct: 427 NPGSAQAAIQSMNG-FQI-GMKR-LKVQLKRPK 456
Score = 48 (22.0 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 366 LSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSES--ESPRSGNNPQTSASA-STIPTV 422
+ QQA + +L +T Q Q I +P + N TS+S ST PT+
Sbjct: 216 MQQQAALVAAQSAYLNPMATMAAVQMQQMATINPNGIIATPITQINSITSSSGTSTPPTL 275
Query: 423 PQSPQVAASP 432
+P V+A P
Sbjct: 276 TATP-VSAIP 284
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 308 (113.5 bits), Expect = 3.0e-25, P = 3.0e-25
Identities = 70/188 (37%), Positives = 106/188 (56%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
P DH D+ KL+V +PR E+D++PLFEE G + E+ + KD+ TG +G F+
Sbjct: 39 PMKDH--DA---IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
+ + A A AL+ PG I+V+ A E KL+VG L KQ ++++
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+F P+GHIE+ ++R S+GCAFV+F + A AAI L+G+ TM G+ LVV+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 210
Query: 258 IADPKKPR 265
+AD + R
Sbjct: 211 LADTDRER 218
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 308 (113.5 bits), Expect = 3.0e-25, P = 3.0e-25
Identities = 70/188 (37%), Positives = 106/188 (56%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
P DH D+ KL+V +PR E+D++PLFEE G + E+ + KD+ TG +G F+
Sbjct: 39 PMKDH--DA---IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
+ + A A AL+ PG I+V+ A E KL+VG L KQ ++++
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+F P+GHIE+ ++R S+GCAFV+F + A AAI L+G+ TM G+ LVV+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 210
Query: 258 IADPKKPR 265
+AD + R
Sbjct: 211 LADTDRER 218
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 305 (112.4 bits), Expect = 4.9e-25, P = 4.9e-25
Identities = 64/175 (36%), Positives = 102/175 (58%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL++ +PR E+D++P+FE+ G + E+ + KDK TG +G F+ + E A A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L KQ + +++ +F P+G+I++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDEC 124
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++R S+GCAFV+F A AAI+ L+G+ T+ G+ LVV+ AD +K R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
Score = 159 (61.0 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 39/104 (37%), Positives = 54/104 (51%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + T+ED+R +FE GN+ E + + G
Sbjct: 76 GMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGP-DGTS 134
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
+G FVKF EA AI AL+G PG +S+ V+FAD E+E
Sbjct: 135 KGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178
Score = 78 (32.5 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 172 EREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFS 229
+RE P +++ L ++ + EI ++F P+G++ +F+ R QS+ FV F
Sbjct: 370 QREGPEGC--NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDR-ATNQSKCFGFVSFD 426
Query: 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+ A AAI +NG F + G + L V++ PK
Sbjct: 427 NPGSAQAAIQAMNG-FQI-GMKR-LKVQLKRPK 456
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 307 (113.1 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 78/211 (36%), Positives = 114/211 (54%)
Query: 65 PMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKD 124
P P G + HP + D KL++ +PR E+D++PLFE+ G + E+ + KD
Sbjct: 112 PKPMNGSESISIHPENGTMKDQDA-IKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKD 170
Query: 125 KRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLY 184
+ TG +G F+ + E A A AL+ PG I+V+ AD E KL+
Sbjct: 171 RYTGMHKGCAFLTYCARESAIKAQNALHEQKTLPGMTRPIQVKPADSESR---GEDRKLF 227
Query: 185 VGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGT 244
VG L+KQ +++++ +F PYG IE+ ++R S+GCAFV+FS A +AIS L+G+
Sbjct: 228 VGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGS 287
Query: 245 FTM-RGSDQ--P------LVVRIADPKKPRT 266
TM GSD P LVV+ AD K RT
Sbjct: 288 QTMPTGSDSLLPQGASSSLVVKFADTDKERT 318
Score = 126 (49.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 35/107 (32%), Positives = 53/107 (49%)
Query: 80 PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFT 139
P G KL+V + + TEED+ LFE +G + E + + G +G FVKF+
Sbjct: 214 PADSESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGP-DGNSKGCAFVKFS 272
Query: 140 IFEEAGNAIRALNGHYIFP---------GEQASIKVRFADGEREHPV 177
EA +AI AL+G P G +S+ V+FAD ++E +
Sbjct: 273 THAEAQSAISALHGSQTMPTGSDSLLPQGASSSLVVKFADTDKERTI 319
Score = 74 (31.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDEL-KQSRGCAFVQFSHREMALAAISGL 241
L++ L ++ E+ ++F P+G + + D QS+ FV F + A AAI +
Sbjct: 514 LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 573
Query: 242 NGTFTMRGSDQPLVVRIADPK 262
NG F + G + L V++ PK
Sbjct: 574 NG-FQI-GMKR-LKVQLKRPK 591
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 300 (110.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 65/180 (36%), Positives = 104/180 (57%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +PR E+D+R LFE+ G + E + KDK TG +G F+ + + A
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQAT 89
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDK-----LYVGCLSKQTSKKEIEEVFSPYG 205
L+ PG +++V+ AD + P +P DK L++G LSKQ S+ E+ +F+ +G
Sbjct: 90 LHDQKTLPGMNRAMQVKPADTD-SRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFG 148
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++++ ++R S+GCAFV++ H A AIS L+G+ TM G+ LVV+ AD +K R
Sbjct: 149 ELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYADTEKER 208
Score = 43 (20.2 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQN 387
Q +Q QQ + QL L+ ++ QN
Sbjct: 293 QQTQQQQQQQQQLAAQLQLQSAAAQN 318
Score = 42 (19.8 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 27/105 (25%), Positives = 42/105 (40%)
Query: 361 RQNSQLSQQAVSDMQKQLHLRQS----STQNVEQQQN----------SHVIVSESESPRS 406
+Q +Q +Q V+ Q+H Q+ ST + Q +N + + S S
Sbjct: 331 QQAAQQAQAVVAHSHAQVHQHQTAQVTSTASHAQTENPAASSYGSLAAAAAAANYSSLLS 390
Query: 407 GNNPQTSASASTIPTVPQSPQVAASPECDWSEHTCPDG-NKYYYN 450
G Q +A+A+ Q AA P E PDG N + Y+
Sbjct: 391 GMESQHNAAAALQLAQIQQQAAAALPMVTPREVLGPDGCNLFIYH 435
Score = 40 (19.1 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 14/68 (20%), Positives = 26/68 (38%)
Query: 366 LSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQS 425
L QQ +D LH+ Q Q ++ ++S+ + Q +A Q+
Sbjct: 262 LLQQQTTD---PLHVLQLQAAAAAAQAAANPVLSQQTQQQQQQQQQLAAQLQLQSAAAQN 318
Query: 426 PQVAASPE 433
P A + +
Sbjct: 319 PHYALAAQ 326
Score = 39 (18.8 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 16/86 (18%), Positives = 31/86 (36%)
Query: 363 NSQLSQQAVSDMQKQLHLR-QSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTIPT 421
N LSQQ Q+Q L Q Q+ Q + + +++ + + + A +
Sbjct: 288 NPVLSQQTQQQQQQQQQLAAQLQLQSAAAQNPHYALAAQALAQQQAAQQAQAVVAHSHAQ 347
Query: 422 VPQSPQVAASPECDWSEHTCPDGNKY 447
V Q + ++ P + Y
Sbjct: 348 VHQHQTAQVTSTASHAQTENPAASSY 373
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 291 (107.5 bits), Expect = 7.5e-24, P = 7.5e-24
Identities = 63/175 (36%), Positives = 101/175 (57%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +PR E+D++P+FE+ G + E+ + KDK TG +G F+ + + A A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L KQ + +++ ++F P+G I++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++R S+GCAFV+F A AAI+ L+ + T+ G+ LVV+ AD +K R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 144 (55.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 36/104 (34%), Positives = 51/104 (49%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + T+ED+R +FE G + E + + G
Sbjct: 76 GMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTS 134
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
+G FVKF EA AI L+ PG +S+ V+FAD E+E
Sbjct: 135 KGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 87 (35.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 180 PD--KLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFSHREMAL 235
PD +++ L ++ + EI ++F P+GH+ +F+ R QS+ FV F + A
Sbjct: 327 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR-ATNQSKCFGFVSFDNPASAQ 385
Query: 236 AAISGLNGTFTMRGSDQPLVVRIADPK 262
AAI +NG F + G + L V++ PK
Sbjct: 386 AAIQAMNG-FQI-GMKR-LKVQLKRPK 409
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 297 (109.6 bits), Expect = 8.2e-24, Sum P(2) = 8.2e-24
Identities = 69/188 (36%), Positives = 109/188 (57%)
Query: 81 DHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVK 137
DH + + A K++V VPRT +E+D+R LFE++G V E+ + +D+ Q +G CFV
Sbjct: 33 DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 92
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F + A A AL+ + PG I+++ AD E+ + V KL++G +SK+ ++ +I
Sbjct: 93 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDI 151
Query: 198 EEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
+FS +G IE+ I+ SRGCA V F+ R MA AI ++ TM G P+VV+
Sbjct: 152 RVMFSSFGQIEECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 211
Query: 258 IADPKKPR 265
AD +K +
Sbjct: 212 FADTQKDK 219
Score = 145 (56.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 170 DGEREHPVAPP-D--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +HP P D K++VG + + S+K++ E+F YG + +I ++RD + QS+GC
Sbjct: 29 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 88
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ + G P+ ++ AD +K E R
Sbjct: 89 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
Score = 100 (40.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 28/99 (28%), Positives = 48/99 (48%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE--VVLPKDKRTGQQQGYCF 135
PA N++ KL++ + + TE DIR +F G + E ++ D G +G
Sbjct: 123 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILWGPD---GLSRGCAL 179
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
V FT A AI+A++ G + + V+FAD +++
Sbjct: 180 VTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218
Score = 69 (29.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ +++ ++F P+G++ + D+ C FV
Sbjct: 418 AGSQKEGPEGA--NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 475
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 476 YDNPVSAQAAIQSMNG 491
Score = 39 (18.8 bits), Expect = 8.2e-24, Sum P(2) = 8.2e-24
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 383 SSTQNVEQQQNSHVIVSESES--PRSGNNPQTSASASTIP 420
S+ QN N+ S S SG++P +S+S S P
Sbjct: 299 SAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNP 338
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 294 (108.6 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 69/190 (36%), Positives = 111/190 (58%)
Query: 79 APDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCF 135
A DH + A K++V +PR+ +E++++ LFE +G V ++ + +D+ Q +G CF
Sbjct: 4 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 63
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V F + A A AL+ PG I+++ AD E+ + V KL++G +SK+ ++
Sbjct: 64 VTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNEN 122
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255
+I +FSP+G IE+ I+R SRGCAFV FS R MA AI ++ + TM G P+V
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 256 VRIADPKKPR 265
V+ AD +K +
Sbjct: 183 VKFADTQKDK 192
Score = 163 (62.4 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K++VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 106 (42.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 155 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 70 (29.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 389 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 446
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 447 YDNPVSAQAAIQAMNG 462
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 294 (108.6 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 69/190 (36%), Positives = 111/190 (58%)
Query: 79 APDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCF 135
A DH + A K++V +PR+ +E++++ LFE +G V ++ + +D+ Q +G CF
Sbjct: 4 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 63
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V F + A A AL+ PG I+++ AD E+ + V KL++G +SK+ ++
Sbjct: 64 VTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNEN 122
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255
+I +FSP+G IE+ I+R SRGCAFV FS R MA AI ++ + TM G P+V
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 256 VRIADPKKPR 265
V+ AD +K +
Sbjct: 183 VKFADTQKDK 192
Score = 163 (62.4 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K++VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 106 (42.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 155 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 70 (29.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 393 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 450
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 451 YDNPVSAQAAIQAMNG 466
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 294 (108.6 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 69/190 (36%), Positives = 111/190 (58%)
Query: 79 APDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCF 135
A DH + A K++V +PR+ +E++++ LFE +G V ++ + +D+ Q +G CF
Sbjct: 4 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 63
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V F + A A AL+ PG I+++ AD E+ + V KL++G +SK+ ++
Sbjct: 64 VTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNEN 122
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255
+I +FSP+G IE+ I+R SRGCAFV FS R MA AI ++ + TM G P+V
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 256 VRIADPKKPR 265
V+ AD +K +
Sbjct: 183 VKFADTQKDK 192
Score = 163 (62.4 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K++VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 106 (42.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 155 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 70 (29.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 393 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 450
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 451 YDNPVSAQAAIQAMNG 466
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 295 (108.9 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 73/209 (34%), Positives = 115/209 (55%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D NG G + P PD I K++V +PR+ +E++++ LFE +G V +
Sbjct: 23 DRINGTANKMNGALDHSDQPDPDAI-------KMFVGQIPRSWSEKELKELFEPYGAVYQ 75
Query: 119 VVLPKDKRTG--QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP 176
+ + +D+ Q +G CFV F + A A AL+ PG I+++ AD E+ +
Sbjct: 76 INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNA 135
Query: 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALA 236
V KL++G +SK+ ++ +I +FSP+G IE+ I+R SRGCAFV FS R MA
Sbjct: 136 VEDR-KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQN 194
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPR 265
AI ++ + TM G P+VV+ AD +K +
Sbjct: 195 AIKAMHQSQTMEGCSSPIVVKFADTQKDK 223
Score = 163 (62.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K++VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 33 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 92
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 93 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 294 (108.6 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 69/190 (36%), Positives = 111/190 (58%)
Query: 79 APDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCF 135
A DH + A K++V +PR+ +E++++ LFE +G V ++ + +D+ Q +G CF
Sbjct: 10 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 69
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V F + A A AL+ PG I+++ AD E+ + V KL++G +SK+ ++
Sbjct: 70 VTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNEN 128
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255
+I +FSP+G IE+ I+R SRGCAFV FS R MA AI ++ + TM G P+V
Sbjct: 129 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 188
Query: 256 VRIADPKKPR 265
V+ AD +K +
Sbjct: 189 VKFADTQKDK 198
Score = 163 (62.4 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K++VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 8 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 67
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 68 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 114
Score = 106 (42.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 102 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 160
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 161 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 197
Score = 70 (29.7 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 399 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 456
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 457 YDNPVSAQAAIQAMNG 472
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 294 (108.6 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 69/190 (36%), Positives = 111/190 (58%)
Query: 79 APDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCF 135
A DH + A K++V +PR+ +E++++ LFE +G V ++ + +D+ Q +G CF
Sbjct: 4 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 63
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V F + A A AL+ PG I+++ AD E+ + V KL++G +SK+ ++
Sbjct: 64 VTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNEN 122
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255
+I +FSP+G IE+ I+R SRGCAFV FS R MA AI ++ + TM G P+V
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 256 VRIADPKKPR 265
V+ AD +K +
Sbjct: 183 VKFADTQKDK 192
Score = 163 (62.4 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K++VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 106 (42.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 155 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 70 (29.7 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 403 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 460
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 461 YDNPVSAQAAIQAMNG 476
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 294 (108.6 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 69/190 (36%), Positives = 111/190 (58%)
Query: 79 APDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCF 135
A DH + A K++V +PR+ +E++++ LFE +G V ++ + +D+ Q +G CF
Sbjct: 28 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 87
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V F + A A AL+ PG I+++ AD E+ + V KL++G +SK+ ++
Sbjct: 88 VTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNEN 146
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255
+I +FSP+G IE+ I+R SRGCAFV FS R MA AI ++ + TM G P+V
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 256 VRIADPKKPR 265
V+ AD +K +
Sbjct: 207 VKFADTQKDK 216
Score = 163 (62.4 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K++VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 26 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 85
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 86 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 106 (42.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 120 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 178
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 179 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
Score = 70 (29.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 413 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 470
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 471 YDNPVSAQAAIQAMNG 486
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 294 (108.6 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 69/190 (36%), Positives = 111/190 (58%)
Query: 79 APDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCF 135
A DH + A K++V +PR+ +E++++ LFE +G V ++ + +D+ Q +G CF
Sbjct: 28 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 87
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V F + A A AL+ PG I+++ AD E+ + V KL++G +SK+ ++
Sbjct: 88 VTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNEN 146
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255
+I +FSP+G IE+ I+R SRGCAFV FS R MA AI ++ + TM G P+V
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 256 VRIADPKKPR 265
V+ AD +K +
Sbjct: 207 VKFADTQKDK 216
Score = 163 (62.4 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K++VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 26 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 85
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 86 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 106 (42.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 120 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 178
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 179 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
Score = 70 (29.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 413 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 470
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 471 YDNPVSAQAAIQAMNG 486
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 294 (108.6 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 69/190 (36%), Positives = 111/190 (58%)
Query: 79 APDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCF 135
A DH + A K++V +PR+ +E++++ LFE +G V ++ + +D+ Q +G CF
Sbjct: 28 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 87
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V F + A A AL+ PG I+++ AD E+ + V KL++G +SK+ ++
Sbjct: 88 VTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNEN 146
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255
+I +FSP+G IE+ I+R SRGCAFV FS R MA AI ++ + TM G P+V
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 256 VRIADPKKPR 265
V+ AD +K +
Sbjct: 207 VKFADTQKDK 216
Score = 163 (62.4 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K++VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 26 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 85
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 86 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 106 (42.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 120 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 178
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 179 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
Score = 70 (29.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 413 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 470
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 471 YDNPVSAQAAIQAMNG 486
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 291 (107.5 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 63/175 (36%), Positives = 101/175 (57%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +PR E+D++P+FE+ G + E+ + KDK TG +G F+ + + A A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L KQ + +++ ++F P+G I++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++R S+GCAFV+F A AAI+ L+ + T+ G+ LVV+ AD +K R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 144 (55.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 36/104 (34%), Positives = 51/104 (49%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + T+ED+R +FE G + E + + G
Sbjct: 76 GMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTS 134
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
+G FVKF EA AI L+ PG +S+ V+FAD E+E
Sbjct: 135 KGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 87 (35.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 180 PD--KLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFSHREMAL 235
PD +++ L ++ + EI ++F P+GH+ +F+ R QS+ FV F + A
Sbjct: 406 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR-ATNQSKCFGFVSFDNPASAQ 464
Query: 236 AAISGLNGTFTMRGSDQPLVVRIADPK 262
AAI +NG F + G + L V++ PK
Sbjct: 465 AAIQAMNG-FQI-GMKR-LKVQLKRPK 488
Score = 41 (19.5 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 360 PRQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQ 392
P+ + ++QQ Q+Q +Q Q +QQQ
Sbjct: 372 PQPPALVAQQPPPPPQQQQQQQQQQQQQQQQQQ 404
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 290 (107.1 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 72/206 (34%), Positives = 113/206 (54%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NG G + P PD I K++V +PR+ +E++++ LFE +G V ++ +
Sbjct: 94 NGTAGKMNGALEHSDQPDPDAI-------KMFVGQIPRSWSEKELKELFEPYGAVYQINI 146
Query: 122 PKDKRTG--QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAP 179
+D+ Q +G CFV F + A A AL+ G I+++ AD E+ + V
Sbjct: 147 LRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSNAVED 206
Query: 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAIS 239
KL++G +SK+ ++ +I +FSPYG IE+ I+R SRGCAFV FS R MA AI
Sbjct: 207 R-KLFIGMVSKKCNENDIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 265
Query: 240 GLNGTFTMRGSDQPLVVRIADPKKPR 265
++ + TM G P+VV+ AD +K +
Sbjct: 266 AMHQSQTMEGCSSPMVVKFADTQKDK 291
Score = 168 (64.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 41/107 (38%), Positives = 62/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G EH P PD K++VG + + S+KE++E+F PYG + I I+RD + QS+GC
Sbjct: 101 NGALEHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGC 160
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 161 CFVTFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 207
Score = 47 (21.6 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 366 LSQQAVSDMQKQLH--LRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTIPT 421
L QQA S ++Q + N Q QN + + + + +S +P T ASA T T
Sbjct: 329 LLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQSSASPST-ASALTSST 385
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 291 (107.5 bits), Expect = 2.5e-23, P = 2.5e-23
Identities = 63/175 (36%), Positives = 101/175 (57%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +PR E+D++P+FE+ G + E+ + KDK TG +G F+ + + A A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L KQ + +++ ++F P+G I++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++R S+GCAFV+F A AAI+ L+ + T+ G+ LVV+ AD +K R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 144 (55.7 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 36/104 (34%), Positives = 51/104 (49%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + T+ED+R +FE G + E + + G
Sbjct: 76 GMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTS 134
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
+G FVKF EA AI L+ PG +S+ V+FAD E+E
Sbjct: 135 KGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 87 (35.7 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 180 PD--KLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFSHREMAL 235
PD +++ L ++ + EI ++F P+GH+ +F+ R QS+ FV F + A
Sbjct: 373 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR-ATNQSKCFGFVSFDNPASAQ 431
Query: 236 AAISGLNGTFTMRGSDQPLVVRIADPK 262
AAI +NG F + G + L V++ PK
Sbjct: 432 AAIQAMNG-FQI-GMKR-LKVQLKRPK 455
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 291 (107.5 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 63/175 (36%), Positives = 101/175 (57%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +PR E+D++P+FE+ G + E+ + KDK TG +G F+ + + A A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L KQ + +++ ++F P+G I++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++R S+GCAFV+F A AAI+ L+ + T+ G+ LVV+ AD +K R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 144 (55.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 36/104 (34%), Positives = 51/104 (49%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + T+ED+R +FE G + E + + G
Sbjct: 76 GMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTS 134
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
+G FVKF EA AI L+ PG +S+ V+FAD E+E
Sbjct: 135 KGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 87 (35.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 180 PD--KLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFSHREMAL 235
PD +++ L ++ + EI ++F P+GH+ +F+ R QS+ FV F + A
Sbjct: 377 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR-ATNQSKCFGFVSFDNPASAQ 435
Query: 236 AAISGLNGTFTMRGSDQPLVVRIADPK 262
AAI +NG F + G + L V++ PK
Sbjct: 436 AAIQAMNG-FQI-GMKR-LKVQLKRPK 459
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 291 (107.5 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 69/190 (36%), Positives = 110/190 (57%)
Query: 79 APDHINDSGIPA-KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCF 135
A DH + A K +V +PR+ +E++++ LFE +G V ++ + +D+ Q +G CF
Sbjct: 4 ALDHSDQPDPDAIKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 63
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V F + A A AL+ PG I+++ AD E+ + V KL++G +SK+ ++
Sbjct: 64 VTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNEN 122
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255
+I +FSP+G IE+ I+R SRGCAFV FS R MA AI ++ + TM G P+V
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 256 VRIADPKKPR 265
V+ AD +K +
Sbjct: 183 VKFADTQKDK 192
Score = 160 (61.4 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 39/107 (36%), Positives = 61/107 (57%)
Query: 170 DGEREHPVAP-PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELK---QSRGC 223
+G +H P PD K +VG + + S+KE++E+F PYG + I ++RD + QS+GC
Sbjct: 2 NGALDHSDQPDPDAIKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
FV F R+ AL A + L+ T+ G P+ ++ AD +K E R
Sbjct: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 106 (42.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 96 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 154
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 155 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 70 (29.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 389 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 446
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 447 YDNPVSAQAAIQAMNG 462
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 288 (106.4 bits), Expect = 6.0e-23, P = 6.0e-23
Identities = 63/175 (36%), Positives = 101/175 (57%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +PR E+D++P+FE+ G + E+ + KDK TG +G F+ + + A A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L KQ + +++ ++F P+G I++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGD----RKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 123
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
++R S+GCAFV+F A AAI+ L+ + T+ G+ LVV+ AD +K R
Sbjct: 124 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 178
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 276 (102.2 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 60/169 (35%), Positives = 97/169 (57%)
Query: 97 VPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156
+PR E+D++P+FE+ G + E+ + KDK TG +G F+ + + A A AL+
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 74
Query: 157 FPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE 216
PG I+V+ AD E KL+VG L KQ + +++ ++F P+G I++ ++R
Sbjct: 75 LPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP 131
Query: 217 LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
S+GCAFV+F A AAI+ L+ + T+ G+ LVV+ AD +K R
Sbjct: 132 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 180
Score = 144 (55.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 36/104 (34%), Positives = 51/104 (49%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + T+ED+R +FE G + E + + G
Sbjct: 77 GMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTS 135
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
+G FVKF EA AI L+ PG +S+ V+FAD E+E
Sbjct: 136 KGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 179
Score = 87 (35.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 180 PD--KLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFSHREMAL 235
PD +++ L ++ + EI ++F P+GH+ +F+ R QS+ FV F + A
Sbjct: 377 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR-ATNQSKCFGFVSFDNPASAQ 435
Query: 236 AAISGLNGTFTMRGSDQPLVVRIADPK 262
AAI +NG F + G + L V++ PK
Sbjct: 436 AAIQAMNG-FQI-GMKR-LKVQLKRPK 459
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 272 (100.8 bits), Expect = 2.7e-21, P = 2.7e-21
Identities = 59/157 (37%), Positives = 90/157 (57%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +PR E+D++PLFEE G + E+ + KD+ TG +G F+ + + A A A
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ A E KL+VG L KQ ++++ +F P+GHIE+
Sbjct: 68 LHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEEC 124
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247
++R S+GCAFV+F + A AAI L+G+ TM
Sbjct: 125 TVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTM 161
Score = 118 (46.6 bits), Expect = 0.00065, P = 0.00065
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISG 240
KL+VG + + +++++ +F +G I ++ +++D L +GCAF+ + R+ AL A S
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67
Query: 241 LNGTFTMRGSDQPLVVRIADPKKPRTGELRG 271
L+ T+ G ++P+ V KP E RG
Sbjct: 68 LHEQKTLPGMNRPIQV------KPAASEGRG 92
Score = 96 (38.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + EED+R LF+ G++ E + + G
Sbjct: 76 GMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTS 134
Query: 131 QGYCFVKFTIFEEAGNAIRALNG 153
+G FVKF EA AI++L+G
Sbjct: 135 KGCAFVKFGSQGEAQAAIQSLHG 157
Score = 72 (30.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 154 HYI-FPGEQASIKVRFADGEREHPVAP---PD--KLYVGCLSKQTSKKEIEEVFSPYGHI 207
HY +P A + F P P+ L++ L ++ E+ + F P+G +
Sbjct: 309 HYAAYPSAYAPVSTAFPQQSSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAV 368
Query: 208 ED--IFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+F+ R QS+ FV F + A AI +NG F + G + L V++ PK
Sbjct: 369 VSAKVFVDR-ATNQSKCFGFVSFDNPTSAQTAIQAMNG-FQI-GMKR-LKVQLKRPK 421
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 276 (102.2 bits), Expect = 2.8e-21, P = 2.8e-21
Identities = 60/169 (35%), Positives = 97/169 (57%)
Query: 97 VPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156
+PR E+D++P+FE+ G + E+ + KDK TG +G F+ + + A A AL+
Sbjct: 91 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 150
Query: 157 FPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE 216
PG I+V+ AD E KL+VG L KQ + +++ ++F P+G I++ ++R
Sbjct: 151 LPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP 207
Query: 217 LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
S+GCAFV+F A AAI+ L+ + T+ G+ LVV+ AD +K R
Sbjct: 208 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 256
Score = 144 (55.7 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 36/104 (34%), Positives = 51/104 (49%)
Query: 74 GFNHPA---PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
G N P P G KL+V + + T+ED+R +FE G + E + + G
Sbjct: 153 GMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTS 211
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
+G FVKF EA AI L+ PG +S+ V+FAD E+E
Sbjct: 212 KGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 255
Score = 87 (35.7 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 180 PD--KLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFSHREMAL 235
PD +++ L ++ + EI ++F P+GH+ +F+ R QS+ FV F + A
Sbjct: 451 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR-ATNQSKCFGFVSFDNPASAQ 509
Query: 236 AAISGLNGTFTMRGSDQPLVVRIADPK 262
AAI +NG F + G + L V++ PK
Sbjct: 510 AAIQAMNG-FQI-GMKR-LKVQLKRPK 533
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 273 (101.2 bits), Expect = 3.5e-21, P = 3.5e-21
Identities = 60/169 (35%), Positives = 97/169 (57%)
Query: 97 VPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156
+PR E+D++P+FE+ G + E+ + KDK TG +G F+ + + A A AL+
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 75
Query: 157 FPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE 216
PG I+V+ AD E KL+VG L KQ + +++ ++F P+G I++ ++R
Sbjct: 76 LPGMNRPIQVKPADSESRGD----RKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP 131
Query: 217 LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
S+GCAFV+F A AAI+ L+ + T+ G+ LVV+ AD +K R
Sbjct: 132 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 180
Score = 138 (53.6 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 74 GFNHPAPDHINDSGIPA--KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
G N P DS KL+V + + T+ED+R +FE G + E + + G +
Sbjct: 78 GMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTSK 136
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
G FVKF EA AI L+ PG +S+ V+FAD E+E
Sbjct: 137 GCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 179
Score = 87 (35.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 180 PD--KLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFSHREMAL 235
PD +++ L ++ + EI ++F P+GH+ +F+ R QS+ FV F + A
Sbjct: 378 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR-ATNQSKCFGFVSFDNPASAQ 436
Query: 236 AAISGLNGTFTMRGSDQPLVVRIADPK 262
AAI +NG F + G + L V++ PK
Sbjct: 437 AAIQAMNG-FQI-GMKR-LKVQLKRPK 460
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 276 (102.2 bits), Expect = 3.7e-21, Sum P(3) = 3.7e-21
Identities = 69/207 (33%), Positives = 117/207 (56%)
Query: 79 APDHINDS--GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFV 136
+PD I D K++V +P+T E +R +FE+ G V + + +DK T +G CFV
Sbjct: 282 SPDSIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFV 341
Query: 137 KFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKE 196
+ + A A AL+ G I+++ AD E + KL+VG L+K+ ++ +
Sbjct: 342 TYYTRKAALRAQDALHNIKTLDGMHHPIQMKPADSENRNE----RKLFVGMLNKKYTEAD 397
Query: 197 IEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256
+ ++F+ +G IE+ ++RD+ QS+GCAFV F+ ++ A+ AI L+ + TM G PLVV
Sbjct: 398 VRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVV 457
Query: 257 RIADPKKPRTGE-LRGNYAF---GTPS 279
+ AD +K + + ++ +AF TPS
Sbjct: 458 KFADTQKEKDQKKMQQIHAFCGINTPS 484
Score = 50 (22.7 bits), Expect = 3.7e-21, Sum P(3) = 3.7e-21
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 404 PRSGN-NPQTSASASTIPTVPQSPQVAASP 432
P +G NP +A+ + +P V Q+ A +P
Sbjct: 506 PSAGRTNPSMAAALAAVPQVQQAGSAATAP 535
Score = 39 (18.8 bits), Expect = 3.7e-21, Sum P(3) = 3.7e-21
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 16 NPNSFSGNYCSWSSDDHRHNF--PDNYHSHHRRHYQYDQMSSEP 57
N NS +G+ + +S + H+ +N ++ + Q Q P
Sbjct: 59 NSNSSAGSSSNSNSSSNNHSLYSNNNLNTGNNSQQQQQQQQQHP 102
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 273 (101.2 bits), Expect = 4.3e-21, P = 4.3e-21
Identities = 86/286 (30%), Positives = 140/286 (48%)
Query: 46 RHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPA--PDHINDSGIPAKLYVAPVPRTATE 103
R +++ Q +P +P P +G G P PD D KL+V +PR E
Sbjct: 7 RKFRW-QTDIDPGQLLQPRPSP-VGSS-GPEPPGGQPDGTKDLDA-IKLFVGQIPRNLDE 62
Query: 104 EDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163
+D++PLFE+ G + E+ + KD TG +G + + A A G Q
Sbjct: 63 KDLKPLFEQFGRIYELTVLKDPYTGMHKGLRWWTHIRRDNPEEAPAAAGG-------QRE 115
Query: 164 IKVRFADGEREHPVAPPD----KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ 219
+ ++ G + P +P KL+VG L+KQ S++++ +F P+G I++ ++R
Sbjct: 116 LGLQRPGGVKLPPSSPSGEGDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS 175
Query: 220 SR-GCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT----GELRGNYA 274
S+ GCAFV+FS A AAI L+G+ TM G+ LVV+ AD K RT ++ G
Sbjct: 176 SKAGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLG 235
Query: 275 FGTPS----FGPN--FLEPV-RPPPNLGNSAGGQILPNVSYRPQHI 313
TPS F P + + + + + +++G + P V++ P HI
Sbjct: 236 ILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHI 281
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 262 (97.3 bits), Expect = 7.1e-21, P = 7.1e-21
Identities = 56/182 (30%), Positives = 105/182 (57%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
++V +P + EE + +F + GN++++ + KDKRT +G F+ F+ EEA NA+
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 152 NGHYIF-PGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
N F ++V+++D E E KL++G L + + +I +F YG IED+
Sbjct: 80 NESGTFLENMNKPLQVKYSDNEIEKMER---KLFIGMLGT-SDEDQIRILFGNYGIIEDL 135
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
IVR++ + +G F+++S R+ + A+ ++G T+ GS+ P++V+ AD ++ + +L
Sbjct: 136 NIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQKRKKLL 195
Query: 271 GN 272
GN
Sbjct: 196 GN 197
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 272 (100.8 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 67/193 (34%), Positives = 107/193 (55%)
Query: 74 GFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGY 133
G P PD+I K++V VP++ E +R +FEE+G V + + +DK TG +G
Sbjct: 348 GEKEPDPDNI-------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGC 400
Query: 134 CFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTS 193
CFV F A A AL+ G I+++ AD E + KL+VG L+K+ +
Sbjct: 401 CFVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRNE----RKLFVGMLNKKLN 456
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAIS-GLNGTFTMRGSDQ 252
+ ++ ++F +G IE+ ++RD+ QS+GCAFV F+ + A++AI L+ M G
Sbjct: 457 ENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTS 516
Query: 253 PLVVRIADPKKPR 265
PLVV+ AD +K +
Sbjct: 517 PLVVKFADTQKEK 529
Score = 49 (22.3 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 41 HSHHRRHYQYDQMSSEP 57
H HHR Y Y + EP
Sbjct: 33 HHHHRLDYDYSAVEIEP 49
Score = 48 (22.0 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 32 HRHNFPDNYHSHHRRH-YQYDQMSSEP 57
H H P +H+HH H YQ + +S P
Sbjct: 124 HHHQ-P--HHNHHHHHPYQRPRPTSPP 147
Score = 43 (20.2 bits), Expect = 4.5e-20, Sum P(3) = 4.5e-20
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 39 NYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80
++HSHH + ++ ++ + + QP + P P
Sbjct: 102 HHHSHHHQLQRHTALNQQQQQLHHHQPHHNHHHHHPYQRPRP 143
Score = 38 (18.4 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 406 SGNNPQTSASASTIPTVPQSPQVAA 430
S NP SA ST +PQ +A
Sbjct: 673 SDPNPMASAYMSTAAGLPQFGSASA 697
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 39 NYHSHHRRHYQYDQMSSEPT 58
++ HH H+ + PT
Sbjct: 125 HHQPHHNHHHHHPYQRPRPT 144
>UNIPROTKB|H9L0T2 [details] [associations]
symbol:H9L0T2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02043362 EMBL:AADN02043363
Ensembl:ENSGALT00000028399 Uniprot:H9L0T2
Length = 225
Score = 233 (87.1 bits), Expect = 8.8e-19, P = 8.8e-19
Identities = 56/149 (37%), Positives = 83/149 (55%)
Query: 118 EVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPV 177
E+ + KD+ TG +G F+ + + A A AL+ PG I+V+ AD E
Sbjct: 46 ELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRG-- 103
Query: 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAA 237
KL+VG L+KQ S+ ++ +F P+G I++ ++R S+GCAFV+FS A AA
Sbjct: 104 GRDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAA 163
Query: 238 ISGLNGTFTMRGSDQPLVVRIADPKKPRT 266
I L+G+ TM G+ LVV+ AD K RT
Sbjct: 164 IHALHGSQTMPGASSSLVVKFADTDKERT 192
Score = 145 (56.1 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 42/127 (33%), Positives = 64/127 (50%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA D + G KL+V + + +E+D+ LFE G + E + + G +G FVK
Sbjct: 96 PA-DSESRGGRDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGP-DGNSKGCAFVK 153
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F+ EA AI AL+G PG +S+ V+FAD ++E + ++ VG S +
Sbjct: 154 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQM-VGAAGGY-SLPSL 211
Query: 198 EEVFSPY 204
FSPY
Sbjct: 212 TLPFSPY 218
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 234 (87.4 bits), Expect = 5.5e-18, P = 5.5e-18
Identities = 62/185 (33%), Positives = 97/185 (52%)
Query: 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
+H A D +D G L V +P+ T+E++R LF G + L +DK G GY F
Sbjct: 7 DHMAEDCRDDIG-RTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGF 65
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V + ++A AI LNG + + +IKV +A E V LY+ L + ++K
Sbjct: 66 VNYVTAKDAERAINTLNGLRL---QSKTIKVSYARPSSE--VIKDANLYISGLPRTMTQK 120
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254
++E++FSP+G I + ++ D+ SRG AF++F R A AI+ NG GS +P+
Sbjct: 121 DVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPI 179
Query: 255 VVRIA 259
V+ A
Sbjct: 180 TVKFA 184
Score = 150 (57.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ + I D A LY++ +PRT T++D+ +F G +I + D+ TG +
Sbjct: 92 KVSYARPSSEVIKD----ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSR 147
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VAPPDKLY 184
G F++F EA AI + NGH PG I V+FA ++ VA +LY
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFAANPNQNKNVALLSQLY 200
Score = 79 (32.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
+++ L + + + ++F P+G + ++ ++RD + +G FV ++ E A AI+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 242 NG 243
NG
Sbjct: 306 NG 307
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 232 (86.7 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 64/180 (35%), Positives = 96/180 (53%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P+ T+E+ + LF G + L +DK TGQ GY FV + +A AI L
Sbjct: 40 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 99
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
NG + + +IKV +A R + D LYV L K S+K++E++FS YG I
Sbjct: 100 NGLKL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 211 FIVRDELKQ--SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
I+ D++ SRG F++F R A AI GLNG + G+ +P+ V+ A+ +TG+
Sbjct: 154 RILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQ 212
Score = 119 (46.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRT-GQQ 130
K + P+ I D A LYV+ +P+T +++D+ LF ++G +I + D+ T G
Sbjct: 110 KVSYARPSSASIRD----ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGIS 165
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFAD 170
+G F++F EA AI+ LNG G I V+FA+
Sbjct: 166 RGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFAN 204
Score = 84 (34.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
++V LS + + + ++F P+G + ++ ++RD + +G FV ++ + A AI+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 242 NG 243
NG
Sbjct: 338 NG 339
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 232 (86.7 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 64/179 (35%), Positives = 98/179 (54%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P+ T+++ + LF G++ L +DK TGQ GY FV ++ +A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
NG + + +IKV +A R + D LYV L K S+KE+E++FS YG I
Sbjct: 101 NGLKL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 211 FIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
I+ D++ SRG F++F R A AI GLNG + G+ +P+ V+ A+ +TG+
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQ 212
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 51/187 (27%), Positives = 85/187 (45%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T +++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE--------HPVAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + H +
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLN 242
Y G L QT + ++ + + YG +K S +FS +A+ +SGL
Sbjct: 226 YAGPLHHQTQRFRLDNLLNMAYG-----------VKSSPLSLIARFS--PIAIDGMSGLA 272
Query: 243 GTFTMRG 249
G +RG
Sbjct: 273 GVGPVRG 279
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 232 (86.7 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 64/179 (35%), Positives = 98/179 (54%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P+ T+++ + LF G++ L +DK TGQ GY FV ++ +A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
NG + + +IKV +A R + D LYV L K S+KE+E++FS YG I
Sbjct: 101 NGLKL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 211 FIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
I+ D++ SRG F++F R A AI GLNG + G+ +P+ V+ A+ +TG+
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQ 212
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T +++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE--------HPVAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + H +
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L QT + ++ + + YG
Sbjct: 226 YAGPLHHQTQRFRLDNLLNMAYG 248
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 232 (86.7 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 64/179 (35%), Positives = 98/179 (54%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P+ T+++ + LF G++ L +DK TGQ GY FV ++ +A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
NG + + +IKV +A R + D LYV L K S+KE+E++FS YG I
Sbjct: 101 NGLKL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 211 FIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
I+ D++ SRG F++F R A AI GLNG + G+ +P+ V+ A+ +TG+
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQ 212
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T +++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE--------HPVAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + H +
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L QT + ++ + + YG
Sbjct: 226 YAGPLHHQTQRFRLDNLLNMAYG 248
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 232 (86.7 bits), Expect = 6.0e-17, P = 6.0e-17
Identities = 64/179 (35%), Positives = 98/179 (54%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P+ T+++ + LF G++ L +DK TGQ GY FV ++ +A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
NG + + +IKV +A R + D LYV L K S+KE+E++FS YG I
Sbjct: 101 NGLKL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 211 FIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
I+ D++ SRG F++F R A AI GLNG + G+ +P+ V+ A+ +TG+
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQ 212
Score = 122 (48.0 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T +++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFAD 170
G F++F EA AI+ LNG G I V+FA+
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFAN 204
Score = 84 (34.6 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
++V LS + + + ++F P+G + ++ ++RD + +G FV ++ + A AI+ L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 242 NG 243
NG
Sbjct: 347 NG 348
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 231 (86.4 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 64/179 (35%), Positives = 97/179 (54%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P+ T+++ + LF G++ L +DK TGQ GY FV ++ +A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
NG + + +IKV +A R + D LYV L K S+KE+E++FS YG I
Sbjct: 101 NGLKL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 211 FIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
I+ D+ SRG F++F R A AI GLNG + G+ +P+ V+ A+ +TG+
Sbjct: 155 RILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQ 212
Score = 130 (50.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T +++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE--------HPVAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + H +
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L QT + ++ + + YG
Sbjct: 226 YAGPLHHQTQRFRLDNLLNMAYG 248
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 231 (86.4 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 64/179 (35%), Positives = 97/179 (54%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P+ T+++ + LF G++ L +DK TGQ GY FV ++ +A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
NG + + +IKV +A R + D LYV L K S+KE+E++FS YG I
Sbjct: 101 NGLKL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 211 FIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
I+ D+ SRG F++F R A AI GLNG + G+ +P+ V+ A+ +TG+
Sbjct: 155 RILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQ 212
Score = 130 (50.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T +++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE--------HPVAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + H +
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L QT + ++ + + YG
Sbjct: 226 YAGPLHHQTQRFRLDNLLNMAYG 248
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 215 (80.7 bits), Expect = 8.0e-17, P = 8.0e-17
Identities = 45/133 (33%), Positives = 75/133 (56%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V +PR E+D++P+FE+ G + E+ + KDK TG +G F+ + + A A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
L+ PG I+V+ AD E KL+VG L KQ + +++ ++F P+G I++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 211 FIVRDELKQSRGC 223
++R S+GC
Sbjct: 125 TVLRGPDGTSKGC 137
Score = 130 (50.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/84 (32%), Positives = 52/84 (61%)
Query: 180 PD--KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALA 236
PD KL+VG + + +K+++ +F +G I ++ +++D+ +GCAF+ + R+ AL
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 237 AISGLNGTFTMRGSDQPLVVRIAD 260
A S L+ T+ G ++P+ V+ AD
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPAD 87
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 231 (86.4 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 75/232 (32%), Positives = 115/232 (49%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 16 QVSNGPTSNTTNGPS---SNSR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 70
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 71 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 127
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 128 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 184
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ +T + + + +P+
Sbjct: 185 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKTSQALLSQLYQSPN 235
Score = 129 (50.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 123 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 178
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKTSQALLSQLYQSPNRR 237
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 238 YPGPLHHQAQRFRLDNLLNMAYG 260
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 232 (86.7 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 69/206 (33%), Positives = 106/206 (51%)
Query: 78 PAPDHINDSGIPAK--LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
P+P S +K L V +P+ T+E+ R LF G + L +DK TGQ GY F
Sbjct: 74 PSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 133
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSK 194
V + ++A AI LNG + + +IKV +A R + D LYV L K ++
Sbjct: 134 VNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQ 187
Query: 195 KEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253
KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG G+ +P
Sbjct: 188 KELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGAAEP 246
Query: 254 LVVRIADPKKPRTGELRGNYAFGTPS 279
+ V+ A+ +T + + + +P+
Sbjct: 247 ITVKFANNPSQKTSQALLSQLYQSPN 272
Score = 129 (50.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 160 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSR 215
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 216 GVGFIRFDKRIEAEEAIKGLNGQKP-SGAAEPITVKFANNPSQKTSQALLSQLYQSPNRR 274
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 275 YPGPLHHQAQRFRLDNLLNMAYG 297
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 228 (85.3 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 68/207 (32%), Positives = 106/207 (51%)
Query: 76 NHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N +P D N L V +P+ T+E+++ LF G + L +DK TGQ GY
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 135 FVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV +A R + D LYV L K +
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMT 137
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252
+KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG G+ +
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATE 196
Query: 253 PLVVRIADPKKPRTGELRGNYAFGTPS 279
P+ V+ A+ +T + + + +P+
Sbjct: 197 PITVKFANNPSQKTNQAILSQLYQSPN 223
Score = 134 (52.2 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 39/131 (29%), Positives = 65/131 (49%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG PG I V+FA+ + P++
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRR 225
Query: 184 YVGCLSKQTSK 194
Y G L++Q +
Sbjct: 226 YPGPLAQQAQR 236
Score = 79 (32.9 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
++V L+ + + ++F P+G + ++ ++RD + +G FV ++ + A AI+ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 242 NG 243
NG
Sbjct: 325 NG 326
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 228 (85.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 74/232 (31%), Positives = 116/232 (50%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT + P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 9 QVSNGPTSNTSNGPS---SNNR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 63
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 64 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 120
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 121 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 177
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 178 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 228
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 225 (84.3 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 62/185 (33%), Positives = 96/185 (51%)
Query: 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
+H A D +D G L V +P+ T+E++R LF G V L +DK G GY F
Sbjct: 7 DHMAEDCRDDIG-RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V + ++A AI LNG + + +IKV +A E V LY+ L + ++K
Sbjct: 66 VNYVTAKDAERAISTLNGLRL---QSKTIKVSYARPSSE--VIKDANLYISGLPRTMTQK 120
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254
++E++FS +G I + ++ D+ SRG AF++F R A AI+ NG GS +P+
Sbjct: 121 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPI 179
Query: 255 VVRIA 259
V+ A
Sbjct: 180 TVKFA 184
Score = 148 (57.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 37/114 (32%), Positives = 59/114 (51%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ + I D A LY++ +PRT T++D+ +F G +I + D+ TG +
Sbjct: 92 KVSYARPSSEVIKD----ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 147
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VAPPDKLY 184
G F++F EA AI + NGH PG I V+FA ++ +A +LY
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFAANPNQNKNMALLSQLY 200
Score = 80 (33.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
+++ L + + + ++F P+G + ++ ++RD + +G FV ++ E A AI+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 242 NG 243
NG
Sbjct: 306 NG 307
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 225 (84.3 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 62/185 (33%), Positives = 96/185 (51%)
Query: 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
+H A D +D G L V +P+ T+E++R LF G V L +DK G GY F
Sbjct: 7 DHMAEDCRDDIG-RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V + ++A AI LNG + + +IKV +A E V LY+ L + ++K
Sbjct: 66 VNYVTAKDAERAISTLNGLRL---QSKTIKVSYARPSSE--VIKDANLYISGLPRTMTQK 120
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254
++E++FS +G I + ++ D+ SRG AF++F R A AI+ NG GS +P+
Sbjct: 121 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPI 179
Query: 255 VVRIA 259
V+ A
Sbjct: 180 TVKFA 184
Score = 148 (57.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 37/114 (32%), Positives = 59/114 (51%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ + I D A LY++ +PRT T++D+ +F G +I + D+ TG +
Sbjct: 92 KVSYARPSSEVIKD----ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 147
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VAPPDKLY 184
G F++F EA AI + NGH PG I V+FA ++ +A +LY
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFAANPNQNKNMALLSQLY 200
Score = 80 (33.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
+++ L + + + ++F P+G + ++ ++RD + +G FV ++ E A AI+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 242 NG 243
NG
Sbjct: 306 NG 307
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 228 (85.3 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 68/207 (32%), Positives = 106/207 (51%)
Query: 76 NHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N +P D N L V +P+ T+E+++ LF G + L +DK TGQ GY
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 135 FVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV +A R + D LYV L K +
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMT 137
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252
+KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG G+ +
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATE 196
Query: 253 PLVVRIADPKKPRTGELRGNYAFGTPS 279
P+ V+ A+ +T + + + +P+
Sbjct: 197 PITVKFANNPSQKTNQAILSQLYQSPN 223
Score = 140 (54.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG PG I V+FA+ + P++
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L++Q + ++ + + YG
Sbjct: 226 YPGPLAQQAQRFRLDNLLNMAYG 248
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 228 (85.3 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 68/207 (32%), Positives = 106/207 (51%)
Query: 76 NHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N +P D N L V +P+ T+E+++ LF G + L +DK TGQ GY
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 135 FVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV +A R + D LYV L K +
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMT 137
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252
+KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG G+ +
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATE 196
Query: 253 PLVVRIADPKKPRTGELRGNYAFGTPS 279
P+ V+ A+ +T + + + +P+
Sbjct: 197 PITVKFANNPSQKTNQAILSQLYQSPN 223
Score = 140 (54.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG PG I V+FA+ + P++
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L++Q + ++ + + YG
Sbjct: 226 YPGPLAQQAQRFRLDNLLNMAYG 248
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 228 (85.3 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 74/232 (31%), Positives = 116/232 (50%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT + P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 11 QVSNGPTSNTSNGPS---SNNR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 65
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 66 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 122
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 123 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 180 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 230
Score = 129 (50.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 118 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 173
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 232
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 233 YPGPLHHQAQRFRLDNLLNMAYG 255
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 228 (85.3 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 74/232 (31%), Positives = 116/232 (50%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT + P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 11 QVSNGPTSNTSNGPS---SNNR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 65
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 66 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 122
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 123 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 180 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 230
Score = 129 (50.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 118 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 173
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 232
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 233 YPGPLHHQAQRFRLDNLLNMAYG 255
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 224 (83.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 61/185 (32%), Positives = 96/185 (51%)
Query: 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
+H A D +D G L V +P+ T++++R LF G V L +DK G GY F
Sbjct: 7 DHMAEDCRDDIG-RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V + ++A AI LNG + + +IKV +A E V LY+ L + ++K
Sbjct: 66 VNYVTAKDAERAINTLNGLRL---QSKTIKVSYARPSSE--VIKDANLYISGLPRNMTQK 120
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254
++E++FS +G I + ++ D+ SRG AF++F R A AI+ NG GS +P+
Sbjct: 121 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPI 179
Query: 255 VVRIA 259
V+ A
Sbjct: 180 TVKFA 184
Score = 146 (56.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 37/114 (32%), Positives = 58/114 (50%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ + I D A LY++ +PR T++D+ +F G +I + D+ TG +
Sbjct: 92 KVSYARPSSEVIKD----ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 147
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VAPPDKLY 184
G F++F EA AI + NGH PG I V+FA ++ VA +LY
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFAANPNQNKNVALLSQLY 200
Score = 80 (33.2 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
+++ L + + + ++F P+G + ++ ++RD + +G FV ++ E A AI+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 242 NG 243
NG
Sbjct: 306 NG 307
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 224 (83.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 61/185 (32%), Positives = 96/185 (51%)
Query: 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
+H A D +D G L V +P+ T++++R LF G V L +DK G GY F
Sbjct: 7 DHMAEDCRDDIG-RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V + ++A AI LNG + + +IKV +A E V LY+ L + ++K
Sbjct: 66 VNYVTAKDAERAINTLNGLRL---QSKTIKVSYARPSSE--VIKDANLYISGLPRSMTQK 120
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254
++E++FS +G I + ++ D+ SRG AF++F R A AI+ NG GS +P+
Sbjct: 121 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG-HKPPGSSEPI 179
Query: 255 VVRIA 259
V+ A
Sbjct: 180 TVKFA 184
Score = 140 (54.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ + I D A LY++ +PR+ T++D+ +F G +I + D+ TG +
Sbjct: 92 KVSYARPSSEVIKD----ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 147
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
G F++F EA AI NGH PG I V+FA
Sbjct: 148 GVAFIRFDKRSEAEEAITNFNGHKP-PGSSEPITVKFA 184
Score = 80 (33.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
+++ L + + + ++F P+G + ++ ++RD + +G FV ++ E A AI+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 242 NG 243
NG
Sbjct: 306 NG 307
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 228 (85.3 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 71/230 (30%), Positives = 110/230 (47%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFE 111
Q+S+ PT + P R P L V +P+ T+E+ R LF
Sbjct: 16 QVSNGPTSNTSNGPS---SNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFG 72
Query: 112 EHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADG 171
G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 73 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA-- 127
Query: 172 EREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFS 229
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++F
Sbjct: 128 -RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186
Query: 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 187 KRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 235
Score = 129 (50.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 123 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 178
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 237
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 238 YPGPLHHQAQRFRLDNLLNMAYG 260
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 228 (85.3 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 74/232 (31%), Positives = 116/232 (50%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT + P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 4 QVSNGPTSNTSNGPS---SNNR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 58
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 115
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 116 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 173 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 223
Score = 129 (50.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 226 YPGPLHHQAQRFRLDNLLNMAYG 248
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 228 (85.3 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 74/232 (31%), Positives = 116/232 (50%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT + P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 4 QVSNGPTSNTSNGPS---SNNR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 58
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 115
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 116 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 173 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 223
Score = 129 (50.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 226 YPGPLHHQAQRFRLDNLLNMAYG 248
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 228 (85.3 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 71/230 (30%), Positives = 110/230 (47%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFE 111
Q+S+ PT + P R P L V +P+ T+E+ R LF
Sbjct: 11 QVSNGPTSNTSNGPS---SNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFG 67
Query: 112 EHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADG 171
G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 68 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA-- 122
Query: 172 EREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFS 229
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++F
Sbjct: 123 -RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Query: 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 182 KRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 230
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 118 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 173
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 232
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 233 YPGPLHHQAQRFRLDNLLNMAYG 255
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 228 (85.3 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 74/232 (31%), Positives = 116/232 (50%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT + P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 11 QVSNGPTSNTSNGPS---SNNR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 65
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 66 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 122
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 123 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 180 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 230
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 118 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 173
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 232
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 233 YPGPLHHQAQRFRLDNLLNMAYG 255
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 228 (85.3 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 74/232 (31%), Positives = 116/232 (50%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT + P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 27 QVSNGPTSNTSNGPS---SNNR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 81
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 82 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 138
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 139 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 195
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 196 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 246
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 134 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 189
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 190 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 248
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 249 YPGPLHHQAQRFRLDNLLNMAYG 271
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 228 (85.3 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 74/232 (31%), Positives = 116/232 (50%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT + P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 15 QVSNGPTSNTSNGPS---SNNR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 69
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 70 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 126
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 127 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 183
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 184 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 234
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 122 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 177
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 178 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 236
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 237 YPGPLHHQAQRFRLDNLLNMAYG 259
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 228 (85.3 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 71/230 (30%), Positives = 110/230 (47%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFE 111
Q+S+ PT + P R P L V +P+ T+E+ R LF
Sbjct: 16 QVSNGPTSNTSNGPS---SNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFG 72
Query: 112 EHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADG 171
G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 73 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA-- 127
Query: 172 EREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFS 229
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++F
Sbjct: 128 -RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186
Query: 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 187 KRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 235
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 123 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 178
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 237
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 238 YPGPLHHQAQRFRLDNLLNMAYG 260
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 228 (85.3 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 74/232 (31%), Positives = 116/232 (50%)
Query: 52 QMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAK--LYVAPVPRTATEEDIRPL 109
Q+S+ PT + P R N P+P + +K L V +P+ T+E+ R L
Sbjct: 16 QVSNGPTSNTSNGPS---SNNR--NCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL 70
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
F G + L +DK TGQ GY FV + ++A AI LNG + + +IKV +A
Sbjct: 71 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA 127
Query: 170 DGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQ 227
R + D LYV L K ++KE+E++FS YG I I+ D++ SRG F++
Sbjct: 128 ---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 184
Query: 228 FSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
F R A AI GLNG G+ +P+ V+ A+ ++ + + + +P+
Sbjct: 185 FDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQKSSQALLSQLYQSPN 235
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 40/143 (27%), Positives = 68/143 (47%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 123 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 178
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG G I V+FA+ + P++
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRR 237
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L Q + ++ + + YG
Sbjct: 238 YPGPLHHQAQRFRLDNLLNMAYG 260
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 228 (85.3 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 68/207 (32%), Positives = 106/207 (51%)
Query: 76 NHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N +P D N L V +P+ T+E+++ LF G + L +DK TGQ GY
Sbjct: 52 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 111
Query: 135 FVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV +A R + D LYV L K +
Sbjct: 112 FVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMT 165
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252
+KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG G+ +
Sbjct: 166 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATE 224
Query: 253 PLVVRIADPKKPRTGELRGNYAFGTPS 279
P+ V+ A+ +T + + + +P+
Sbjct: 225 PITVKFANNPSQKTNQAILSQLYQSPN 251
Score = 140 (54.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 139 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 194
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG PG I V+FA+ + P++
Sbjct: 195 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRR 253
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L++Q + ++ + + YG
Sbjct: 254 YPGPLAQQAQRFRLDNLLNMAYG 276
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 226 (84.6 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 74/242 (30%), Positives = 112/242 (46%)
Query: 81 DHINDSGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFT 139
D +ND L V +P+ T+ ++ LF G + + +D +TG GY FV FT
Sbjct: 115 DLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFT 174
Query: 140 IFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEE 199
++ AI+ LNG + +KV +A E LYV L + + +++
Sbjct: 175 SEMDSQRAIKVLNGITV---RNKRLKVSYARPGGES--IKDTNLYVTNLPRTITDDQLDT 229
Query: 200 VFSPYGHIEDIFIVRDELK-QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258
+F YG I I+RD+L + RG AFV+++ RE A AIS LN GS QPL VR+
Sbjct: 230 IFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGS-QPLSVRL 288
Query: 259 ADPK-KPRTGELRGNYAFGTPSFGPNFLEPVRPPPNLGNSAGGQILPNVSYRPQHIFNNS 317
A+ K + + P P +PP ++ +A + S + Q F NS
Sbjct: 289 AEEHGKAKAAHFMSQMGVVPANVPP---PPPQPPAHMA-AAFNMMHRGRSIKSQQRFQNS 344
Query: 318 HP 319
HP
Sbjct: 345 HP 346
Score = 140 (54.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/100 (33%), Positives = 56/100 (56%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P + I D+ LYV +PRT T++ + +F ++G++++ + +DK TG+ +
Sbjct: 197 KVSYARPGGESIKDTN----LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPR 252
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFP-GEQASIKVRFAD 170
G FV++ EEA AI ALN + P G + VR A+
Sbjct: 253 GVAFVRYNKREEAQEAISALNN--VIPEGGSQPLSVRLAE 290
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 228 (85.3 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 68/207 (32%), Positives = 106/207 (51%)
Query: 76 NHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N +P D N L V +P+ T+E+++ LF G + L +DK TGQ GY
Sbjct: 53 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 112
Query: 135 FVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV +A R + D LYV L K +
Sbjct: 113 FVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMT 166
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252
+KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG G+ +
Sbjct: 167 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATE 225
Query: 253 PLVVRIADPKKPRTGELRGNYAFGTPS 279
P+ V+ A+ +T + + + +P+
Sbjct: 226 PITVKFANNPSQKTNQAILSQLYQSPN 252
Score = 140 (54.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 140 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 195
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG PG I V+FA+ + P++
Sbjct: 196 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRR 254
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L++Q + ++ + + YG
Sbjct: 255 YPGPLAQQAQRFRLDNLLNMAYG 277
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 228 (85.3 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 68/207 (32%), Positives = 106/207 (51%)
Query: 76 NHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N +P D N L V +P+ T+E+++ LF G + L +DK TGQ GY
Sbjct: 53 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 112
Query: 135 FVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV +A R + D LYV L K +
Sbjct: 113 FVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMT 166
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252
+KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG G+ +
Sbjct: 167 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATE 225
Query: 253 PLVVRIADPKKPRTGELRGNYAFGTPS 279
P+ V+ A+ +T + + + +P+
Sbjct: 226 PITVKFANNPSQKTNQAILSQLYQSPN 252
Score = 140 (54.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 140 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 195
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG PG I V+FA+ + P++
Sbjct: 196 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRR 254
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L++Q + ++ + + YG
Sbjct: 255 YPGPLAQQAQRFRLDNLLNMAYG 277
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 223 (83.6 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 61/194 (31%), Positives = 97/194 (50%)
Query: 74 GFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGY 133
G+ D D L V +P+ T++++R LF G V L +DK G GY
Sbjct: 4 GYEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGY 63
Query: 134 CFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV FA E LY+ L + +
Sbjct: 64 GFVNYLNAKDAERAINTLNGLRL---QSKTIKVSFARPSSE--TIKDANLYISGLPRTMT 118
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252
+K++E++F P+GHI + ++ D+ SRG AF++F R A AI+ NG GS +
Sbjct: 119 QKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSE 177
Query: 253 PLVVRIA-DPKKPR 265
P+ V+ A +P + +
Sbjct: 178 PITVKFAANPNQSK 191
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/166 (30%), Positives = 76/166 (45%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K F P+ + I D A LY++ +PRT T++D+ +F G++I + D+ TG +
Sbjct: 92 KVSFARPSSETIKD----ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSR 147
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VA-------PPDKL 183
G F++F EA AI + NGH PG I V+FA + +A P +
Sbjct: 148 GVAFIRFDKRSEAEEAIASFNGHKP-PGSSEPITVKFAANPNQSKNMALLSQICHSPARR 206
Query: 184 YVGCLSKQTSKKEIEEVFSPYG--HIEDIFIVRDELKQSRG-CAFV 226
+ G + Q + FSP G H+ I V S G C F+
Sbjct: 207 FGGPVHHQAQRFR----FSPMGVDHMSSISSVNVASSASSGWCIFI 248
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 223 (83.6 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 61/185 (32%), Positives = 96/185 (51%)
Query: 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
+H A D +D G L V +P+ T++++R LF G V L +DK G GY F
Sbjct: 15 DHMAEDCRDDIG-RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 73
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V + ++A AI LNG + + +IKV +A E V LY+ L + ++K
Sbjct: 74 VNYVTAKDAERAINTLNGLRL---QSKTIKVSYARPSSE--VIKDANLYISGLPRTMTQK 128
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254
++E++FS +G I + ++ D+ SRG AF++F R A AI+ NG GS +P+
Sbjct: 129 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPI 187
Query: 255 VVRIA 259
V+ A
Sbjct: 188 TVKFA 192
Score = 151 (58.2 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ + I D A LY++ +PRT T++D+ +F G +I + D+ TG +
Sbjct: 100 KVSYARPSSEVIKD----ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 155
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VAPPDKLY 184
G F++F EA AI + NGH PG I V+FA ++ VA +LY
Sbjct: 156 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFAANPNQNKNVALLSQLY 208
Score = 80 (33.2 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
+++ L + + + ++F P+G + ++ ++RD + +G FV ++ E A AI+ L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 242 NG 243
NG
Sbjct: 314 NG 315
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 222 (83.2 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 61/185 (32%), Positives = 95/185 (51%)
Query: 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
+H A D D G L V +P+ T++++R LF G V L +DK G GY F
Sbjct: 7 DHMAEDCRGDIG-RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V + ++A AI LNG + + +IKV +A E V LY+ L + ++K
Sbjct: 66 VNYVTAKDAERAINTLNGLRL---QSKTIKVSYARPSSE--VIKDANLYISGLPRTMTQK 120
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254
++E++FS +G I + ++ D+ SRG AF++F R A AI+ NG GS +P+
Sbjct: 121 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPI 179
Query: 255 VVRIA 259
V+ A
Sbjct: 180 TVKFA 184
Score = 151 (58.2 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ + I D A LY++ +PRT T++D+ +F G +I + D+ TG +
Sbjct: 92 KVSYARPSSEVIKD----ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 147
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VAPPDKLY 184
G F++F EA AI + NGH PG I V+FA ++ VA +LY
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFAANPNQNKNVALLSQLY 200
Score = 80 (33.2 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
+++ L + + + ++F P+G + ++ ++RD + +G FV ++ E A AI+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 242 NG 243
NG
Sbjct: 306 NG 307
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 209 (78.6 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 62/171 (36%), Positives = 89/171 (52%)
Query: 76 NHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N +P D N L V +P+ T+E+++ LF G + L +DK TGQ GY
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 135 FVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV +A R + D LYV L K +
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMT 137
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNG 243
+KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 118 (46.6 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNG 153
G F++F EA AI+ LNG
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNG 188
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 226 (84.6 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 67/207 (32%), Positives = 106/207 (51%)
Query: 76 NHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N +P D N L V +P++ T+E+++ LF G + L +DK TGQ GY
Sbjct: 52 NCSSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 111
Query: 135 FVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV +A R + D LYV L K +
Sbjct: 112 FVNYVDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMT 165
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELK-QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252
+KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG + +
Sbjct: 166 QKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ-KPPAATE 224
Query: 253 PLVVRIADPKKPRTGELRGNYAFGTPS 279
P+ V+ A+ +T + + + +P+
Sbjct: 225 PITVKFANNPSQKTNQAILSQLYHSPN 251
Score = 130 (50.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 139 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSR 194
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFAD 170
G F++F EA AI+ LNG P I V+FA+
Sbjct: 195 GVGFIRFDKRIEAEEAIKGLNGQKP-PAATEPITVKFAN 232
Score = 79 (32.9 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
++V L+ + + ++F P+G + ++ ++RD + +G FV ++ + A AI+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 242 NG 243
NG
Sbjct: 367 NG 368
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 228 (85.3 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 76/243 (31%), Positives = 118/243 (48%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L + +P+ T+ ++ LF G + + +D +TG GY FV + ++ +AI+ L
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
NG Y+ +KV +A R + D LYV LS+ + ++ +FSPYG I
Sbjct: 155 NGFYV---RNKRLKVSYA---RPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQR 208
Query: 211 FIVRDELK-QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK-KPRTGE 268
I+RD+L + RG AFV+++ RE A AI LN T GS QP+ VR+A+ K + +
Sbjct: 209 NILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGS-QPIWVRLAEEHGKAKAAQ 267
Query: 269 L-------RGNYAFGTPSFGPNFLEPVRPPPNLGN----SAGGQILPNVSYRPQHIFNNS 317
G G P GP P+ PP + N + +P ++PQH +
Sbjct: 268 FMAQIGGGNGGGGGGPPHMGPG--GPMHPPHHHNNHHHNNHHNPHMPPHHHQPQH--PHQ 323
Query: 318 HPQ 320
HPQ
Sbjct: 324 HPQ 326
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 225 (84.3 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 65/202 (32%), Positives = 106/202 (52%)
Query: 80 PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFT 139
P+ DS L V +P+ T+E+++ LF G + L +DK TGQ GY FV +
Sbjct: 60 PNGSEDS--KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYM 117
Query: 140 IFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIE 198
++A AI LNG + + +IKV +A R + D LYV L K ++KE+E
Sbjct: 118 EPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELE 171
Query: 199 EVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
++FS +G I I+ D++ SRG F++F R A AI GLNG G+ +P+ V+
Sbjct: 172 QLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ-KPPGATEPITVK 230
Query: 258 IADPKKPRTGELRGNYAFGTPS 279
A+ ++ + ++ + +P+
Sbjct: 231 FANNPSQKSSQALLSHLYQSPN 252
Score = 147 (56.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 45/168 (26%), Positives = 80/168 (47%)
Query: 47 HYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDI 106
+Y + + + + NG + K + P+ I D A LYV+ +P+T T++++
Sbjct: 115 NYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD----ANLYVSGLPKTMTQKEL 170
Query: 107 RPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166
LF + G +I + D+ TG +G F++F EA AI+ LNG PG I V
Sbjct: 171 EQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKP-PGATEPITV 229
Query: 167 RFADGERE--------HPVAPPDKLYVGCLSKQTSKKEIEEVFS-PYG 205
+FA+ + H P++ Y G L++Q + ++ + + YG
Sbjct: 230 KFANNPSQKSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYG 277
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 223 (83.6 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 62/185 (33%), Positives = 99/185 (53%)
Query: 97 VPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156
+P+ T+E+++ LF G + L +DK TGQ GY FV + ++A AI LNG +
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 157 FPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD 215
+ +IKV +A R + D LYV L K ++KE+E++FS YG I I+ D
Sbjct: 106 ---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
Query: 216 ELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYA 274
++ SRG F++F R A AI GLNG G+ +P+ V+ A+ +T + +
Sbjct: 160 QVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQKTNQAILSQL 218
Query: 275 FGTPS 279
+ +P+
Sbjct: 219 YQSPN 223
Score = 140 (54.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG PG I V+FA+ + P++
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L++Q + ++ + + YG
Sbjct: 226 YPGPLAQQAQRFRLDNLLNMAYG 248
Score = 37 (18.1 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 12 PPEFNPNSFSGNYCSWSSDDHRHNFPDNY 40
P N N+ S S +++D + N DNY
Sbjct: 18 PTTVN-NNCSSPVDSGNTEDSKTNLIDNY 45
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 223 (83.6 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 62/185 (33%), Positives = 99/185 (53%)
Query: 97 VPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156
+P+ T+E+++ LF G + L +DK TGQ GY FV + ++A AI LNG +
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 157 FPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD 215
+ +IKV +A R + D LYV L K ++KE+E++FS YG I I+ D
Sbjct: 106 ---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
Query: 216 ELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYA 274
++ SRG F++F R A AI GLNG G+ +P+ V+ A+ +T + +
Sbjct: 160 QVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQKTNQAILSQL 218
Query: 275 FGTPS 279
+ +P+
Sbjct: 219 YQSPN 223
Score = 140 (54.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 111 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 166
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG PG I V+FA+ + P++
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRR 225
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L++Q + ++ + + YG
Sbjct: 226 YPGPLAQQAQRFRLDNLLNMAYG 248
Score = 37 (18.1 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 12 PPEFNPNSFSGNYCSWSSDDHRHNFPDNY 40
P N N+ S S +++D + N DNY
Sbjct: 18 PTTVN-NNCSSPVDSGNTEDSKTNLIDNY 45
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 226 (84.6 bits), Expect = 7.0e-16, P = 7.0e-16
Identities = 70/210 (33%), Positives = 103/210 (49%)
Query: 76 NHPAPDHINDSGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N A ++ N+ P L V +P+T ++++IR LF G V L +DK TGQ GY
Sbjct: 95 NATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYG 154
Query: 135 FVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSK 194
FV + E+A AI ALNG + + +IKV A E LYV L K ++
Sbjct: 155 FVNYVKQEDAEKAINALNGLRL---QNKTIKVSIARPSSESIKGA--NLYVSGLPKNMTQ 209
Query: 195 KEIEEVFSPYGHIEDIFIVRDELKQ------SRGCAFVQFSHREMALAAISGLNGTFTMR 248
++E +FSPYG I I+ D + S+G F++F R A AI LNGT T +
Sbjct: 210 SDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPK 268
Query: 249 GSDQPLVVRIADPKKPRTGELRGNYAFGTP 278
S +P+ V+ A+ ++ A+ P
Sbjct: 269 NSTEPITVKFANNPSSNKNSMQPLAAYIAP 298
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 222 (83.2 bits), Expect = 7.2e-16, P = 7.2e-16
Identities = 61/185 (32%), Positives = 95/185 (51%)
Query: 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
+H A D D G L V +P+ T++++R LF G V L +DK G GY F
Sbjct: 34 DHMAEDCRGDIG-RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 92
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKK 195
V + ++A AI LNG + + +IKV +A E V LY+ L + ++K
Sbjct: 93 VNYVTAKDAERAINTLNGLRL---QSKTIKVSYARPSSE--VIKDANLYISGLPRTMTQK 147
Query: 196 EIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254
++E++FS +G I + ++ D+ SRG AF++F R A AI+ NG GS +P+
Sbjct: 148 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPI 206
Query: 255 VVRIA 259
V+ A
Sbjct: 207 TVKFA 211
Score = 151 (58.2 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ + I D A LY++ +PRT T++D+ +F G +I + D+ TG +
Sbjct: 119 KVSYARPSSEVIKD----ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 174
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VAPPDKLY 184
G F++F EA AI + NGH PG I V+FA ++ VA +LY
Sbjct: 175 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFAANPNQNKNVALLSQLY 227
Score = 80 (33.2 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
+++ L + + + ++F P+G + ++ ++RD + +G FV ++ E A AI+ L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 242 NG 243
NG
Sbjct: 333 NG 334
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 226 (84.6 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 70/234 (29%), Positives = 113/234 (48%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
+YV + + T++D++ F E+G + V+ KD G+ +G+ FV F ++A A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 152 NGH-------YIFPGEQAS-----IKVRFADGEREHPVA-PPDKLYVGCLSKQTSKKEIE 198
NGH Y+ ++ S ++VR+ +E LYV L S ++++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 199 EVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258
E+FSP+G + ++RD S+G FV F+ E A A+S L+G +PL V I
Sbjct: 336 EIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMI---ESKPLYVAI 392
Query: 259 ADPKKPRTGELRGNYA-----FGTPSFGPNFLEPVRPP--PNLGNSAG-GQILP 304
A K+ R L+ ++ PS GP PV PP P +G GQ P
Sbjct: 393 AQRKEDRRVRLQAQFSQVRPVAMQPSVGPRM--PVYPPGGPGIGQQMFYGQAPP 444
Score = 164 (62.8 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 45/152 (29%), Positives = 75/152 (49%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
LYV + T+ + F + G V+ V + +D T + GY +V FT ++A AI+ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
N YI P I+V ++ + + +++ L + K + + FS +G+I
Sbjct: 98 N--YI-PLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 154
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
+ D QS+G FVQ+++ E A AI LNG
Sbjct: 155 VAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
>UNIPROTKB|Q0V9L3 [details] [associations]
symbol:celf4 "CUGBP Elav-like family member 4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
Uniprot:Q0V9L3
Length = 424
Score = 156 (60.0 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 42/120 (35%), Positives = 60/120 (50%)
Query: 53 MSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEE 112
+SS PT NG G P DH D+ KL++ +PR E+D++PLFEE
Sbjct: 18 LSSNPTGHMNGLTHSPGGAA---TIPMKDH--DA---IKLFIGQIPRNLDEKDLKPLFEE 69
Query: 113 HGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGE 172
G + E+ + KD+ TG +G F+ + E A A AL+ PG I+V+ AD E
Sbjct: 70 FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE 129
Score = 136 (52.9 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 38/133 (28%), Positives = 67/133 (50%)
Query: 144 AGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSP 203
+ N +NG PG A+I ++ +H KL++G + + +K+++ +F
Sbjct: 19 SSNPTGHMNGLTHSPGGAATIPMK------DHDAI---KLFIGQIPRNLDEKDLKPLFEE 69
Query: 204 YGHIEDIFIVRDELK-QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G I ++ +++D +GCAF+ + RE AL A S L+ T+ G ++P+ V
Sbjct: 70 FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV------ 123
Query: 263 KPRTGELRGNYAF 275
KP E RG AF
Sbjct: 124 KPADSESRGGCAF 136
Score = 109 (43.4 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 219 QSRG-CAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT 266
+SRG CAFV++S A AAI+ L+G+ TM G+ LVV+ AD K RT
Sbjct: 129 ESRGGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT 177
Score = 43 (20.2 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 243 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 275
Score = 43 (20.2 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 225 FVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
FV F + A AAI +NG F + G + L V++ PK
Sbjct: 384 FVSFDNPASAQAAIQAMNG-FQI-GMKR-LKVQLKRPK 418
Score = 37 (18.1 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 172 EREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI 207
+RE P L++ L ++ E+ ++F P+G +
Sbjct: 352 QREGPEGC--NLFIYHLPQEFGDAELMQMFLPFGFV 385
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 205 (77.2 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 56/186 (30%), Positives = 101/186 (54%)
Query: 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIR 149
A +Y+ + ++ + L + G ++ V LPKD+ T QGY FV+F E+A A R
Sbjct: 13 ATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASR 72
Query: 150 ALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED 209
+NG ++ G+ I+V A +++ V +L+VG L +++ + + FS +G++ +
Sbjct: 73 IMNGIRLY-GKP--IRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVN 129
Query: 210 I-FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
+ + RD+ S+G FV F+ E + AAI+ +NG + M ++ + V+ A KK GE
Sbjct: 130 LPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLM---NKQVSVQYAY-KKDGKGE 185
Query: 269 LRGNYA 274
G+ A
Sbjct: 186 RHGDQA 191
Score = 113 (44.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 39/146 (26%), Positives = 67/146 (45%)
Query: 35 NFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFI---GRKRGFNHPAPDHINDSGIPAK 91
+ P + + + Y + + +SE + + M I G+ N + D I A+
Sbjct: 43 HLPKDRVTQSHQGYGFVEFNSEEDAEYASRIMNGIRLYGKPIRVNKASADKQKSVEIGAE 102
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKR--TGQQQGYCFVKFTIFEEAGNAIR 149
L+V + TE+ + F GN++ LPK R + +GY FV F FE + AI
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVN--LPKVARDDSNLSKGYGFVSFADFESSDAAIA 160
Query: 150 ALNGHYIFPGEQASIKVRFA-DGERE 174
+NG Y+ +Q S++ + DG+ E
Sbjct: 161 NMNGQYLM-NKQVSVQYAYKKDGKGE 185
Score = 49 (22.3 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 287 PVRPPPNLGNSAGGQI-LP----NVSYRPQHIFNNSHPQVFS 323
P RPPP+ G Q+ LP N +PQ+ + P F+
Sbjct: 281 PARPPPSQAGYGGPQVFLPPGLNNSGQQPQYTPQAAPPPGFA 322
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 216 (81.1 bits), Expect = 7.9e-15, P = 7.9e-15
Identities = 64/199 (32%), Positives = 102/199 (51%)
Query: 127 TGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVG 186
T +G F+ + + A A AL+ PG I+V+ AD E KL+VG
Sbjct: 17 THTHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR---GGDRKLFVG 73
Query: 187 CLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSR-GCAFVQFSHREMALAAISGLNGTF 245
L+KQ S++++ +F P+G I++ ++R S+ GCAFV+FS A AAI L+G+
Sbjct: 74 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQ 133
Query: 246 TMRGSDQPLVVRIADPKKPRT----GELRGNYAFGTPS----FGPN--FLEPV-RPPPNL 294
TM G+ LVV+ AD K RT ++ G TPS F P + + + + +
Sbjct: 134 TMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTV 193
Query: 295 GNSAGGQILPNVSYRPQHI 313
+++G + P V++ P HI
Sbjct: 194 LSTSGSYLSPGVAFSPCHI 212
Score = 144 (55.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 40/125 (32%), Positives = 61/125 (48%)
Query: 80 PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFT 139
P G KL+V + + +EED+ LF+ G + E + + + G FVKF+
Sbjct: 58 PADSESRGGDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFS 117
Query: 140 IFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEE 199
EA AI AL+G PG +S+ V+FAD ++E + ++ VG L T +
Sbjct: 118 SHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQM-VGQLGILTPSLTLP- 175
Query: 200 VFSPY 204
FSPY
Sbjct: 176 -FSPY 179
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 199 (75.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 61/242 (25%), Positives = 115/242 (47%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
++V +P +ED+ LF ++G V+ + D + G GY FV+F+ +E+ AI L
Sbjct: 111 VFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSYGYGFVRFSSPQESAAAIEEL 169
Query: 152 NGHYIFPGEQASIKVR--FADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED 209
+G Y + ++ ++ + + ++P + L++ L + ++ ++F P+G I +
Sbjct: 170 DG-YQYQNKKLLCRLSNLYTNLNSKYP---SNNLFIKPLPYDVTDDQLRKLFEPFGKIIE 225
Query: 210 IFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTG-- 267
++ D QS+ FV+FS A AI +NG + S PLVV+ AD ++ +
Sbjct: 226 CKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQKISRK 285
Query: 268 --ELRGNYA---FGTPSFGPNFLEPVRPPPNLGNSAGGQILPNVSYRPQHIFNNSHPQVF 322
+++ Y P F P FL+P P N N+ N + + NN++
Sbjct: 286 QRKMQTIYQEKIIAPPIFPPQFLQPTVLPNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKI 345
Query: 323 SN 324
+N
Sbjct: 346 AN 347
Score = 70 (29.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 35/176 (19%), Positives = 62/176 (35%)
Query: 362 QNSQLSQQAVSDMQKQL---HLRQSSTQNVEQQQNSHVIVSESES-PRSGNNPQTSASAS 417
Q +L + Q Q+ H Q + EQQ+ H+++ S+ P NN +
Sbjct: 353 QLDKLDHHTLLQQQHQILIDHSHQQQQEQQEQQEQQHILIDHSQQHPHLINNQNYYTNYM 412
Query: 418 TIPTVPQSPQVAASPECDWSEHTCPDGNKYYYNCETCESRWDKPEE--YLLFEQQIEKQQ 475
+ P + H ++YY + P Y QI Q
Sbjct: 413 EYMYLSYGDY----PNPNHHHH-----HQYYTTQQIYHQPIYYPTANYYTDIHHQIHPTQ 463
Query: 476 KLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQDPSVSASEQDHLQVQTKSSPV 531
+Q Q + Q Q QLQP ++++Q Q +Q +L ++ + +
Sbjct: 464 HIQ--PQQPQQLLQSQQLQSQQLQPQQLQQQLQQQQQQQQQLQQQNLNIEIPNQSI 517
Score = 61 (26.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 18/96 (18%), Positives = 47/96 (48%)
Query: 437 SEHTCPDGNKYYYNCETCESRWDKPEEYLL-FEQQIEKQQKLQNGSQSVSSTKEVAQTQE 495
++H P + + +S+ +P++ +QQ ++QQ+LQ + ++ + +T
Sbjct: 462 TQHIQPQQPQQLLQSQQLQSQQLQPQQLQQQLQQQQQQQQQLQQQNLNIEIPNQSIRTSG 521
Query: 496 VQLQPHVFRKKVQLQDPSVSASEQDHLQVQTKSSPV 531
+ + +KK + S + Q+ +Q+ + S+P+
Sbjct: 522 -GINKNNSKKKKKKHQQVQSQTSQNSIQIASSSTPL 556
Score = 59 (25.8 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQNVE-QQQNSHV-IVSESESPRSGNNPQTS 413
Q+ QL Q + Q Q L+Q Q + QQQN ++ I ++S G N S
Sbjct: 475 QSQQLQSQQLQPQQLQQQLQQQQQQQQQLQQQNLNIEIPNQSIRTSGGINKNNS 528
Score = 43 (20.2 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 16/75 (21%), Positives = 34/75 (45%)
Query: 360 PRQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTI 419
P Q+ + S + K+ + Q+ + QNS + ++ S +P + ++ T S +
Sbjct: 513 PNQSIRTSGGINKNNSKKKKKKHQQVQS-QTSQNS-IQIASSSTPLNTSSSSTITSFGSP 570
Query: 420 P--TVPQSPQVAASP 432
P ++P + SP
Sbjct: 571 PNTSIPSPTSDSISP 585
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 211 (79.3 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 63/180 (35%), Positives = 94/180 (52%)
Query: 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRT-GQQQGYCFVKFTIFE 142
N L V +P+ T+E+++ LF G + L +DK T GQ GY FV + +
Sbjct: 60 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPK 119
Query: 143 EAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVF 201
+A AI LNG + + +IKV +A R + D LYV L K ++KE+E++F
Sbjct: 120 DAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLF 173
Query: 202 SPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
S YG I I+ D++ SRG F++F R A AI GLNG G+ +P+ V+ A+
Sbjct: 174 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFAN 232
Score = 153 (58.9 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 44/149 (29%), Positives = 76/149 (51%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 139 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 194
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE---HPVAP-----PDKL 183
G F++F EA AI+ LNG PG I V+FA+ + H + P++
Sbjct: 195 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKVNHTILSQLYQSPNRR 253
Query: 184 YVGCLSKQTSKKEIEEVFS-PYGHIEDIF 211
Y G L++Q + ++ + + YG I+ F
Sbjct: 254 YPGPLAQQAQRFRLDNLLNMAYGGIKSRF 282
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 206 (77.6 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 58/187 (31%), Positives = 91/187 (48%)
Query: 74 GFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGY 133
G+ D D L V +P+ T++++R LF G V L +DK G GY
Sbjct: 4 GYGDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGY 63
Query: 134 CFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTS 193
FV + ++A AI LNG + + +IKV A E LY+ L + +
Sbjct: 64 GFVNYLNAKDAERAINTLNGLRL---QSKTIKVSVARPSSES--IKDANLYISGLPRTMT 118
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252
+K++E++F P+G I + ++ D+ SRG AF++F R A AI+ NG GS +
Sbjct: 119 QKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSE 177
Query: 253 PLVVRIA 259
P+ V+ A
Sbjct: 178 PITVKFA 184
Score = 143 (55.4 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 48/160 (30%), Positives = 74/160 (46%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
P+ + I D A LY++ +PRT T++D+ +F G +I + D+ TG +G F++
Sbjct: 98 PSSESIKD----ANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIR 153
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VA-------PPDKLYVGCLS 189
F EA AI + NGH PG I V+FA ++ +A P + + G +
Sbjct: 154 FDKRSEAEEAIASFNGHKP-PGSSEPITVKFAANPNQNKNMALLSQLCHSPARRFGGPVH 212
Query: 190 KQTSKKEIEEVFSPYG--HIEDIFIVRDELKQSRG-CAFV 226
Q + FSP G H+ I V S G C F+
Sbjct: 213 HQAQRFR----FSPMGVDHMSSISGVNVASSASSGWCIFI 248
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 164 (62.8 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 50/156 (32%), Positives = 85/156 (54%)
Query: 121 LPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPP 180
+PKD+ TGQ QGY FV+F E+A AI+ +N ++ G+ I+V A ++ +
Sbjct: 1 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLY-GKP--IRVNKASAHNKN-LDVG 56
Query: 181 DKLYVGCLSKQTSKKEIEEVFSPYGHI-EDIFIVRD-ELKQSRGCAFVQFSHREMALAAI 238
+++G L + +K + + FS +G I + I+RD + S+G AF+ F+ + + AAI
Sbjct: 57 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 116
Query: 239 SGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYA 274
+NG + ++P+ V A KK GE G+ A
Sbjct: 117 EAMNGQYLC---NRPITVSYAF-KKDSKGERHGSAA 148
Score = 49 (22.3 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 381 RQSSTQN-VEQQQNSHVIVSESESPRSGNNPQTSASASTIP 420
R + QN + Q H + +++ P S NP S+ S +P
Sbjct: 150 RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLP 190
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 205 (77.2 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 60/192 (31%), Positives = 95/192 (49%)
Query: 81 DHINDSGIPAK--LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKF 138
DH+ D I +K L V +P+ +++++R LF G V L +DK G GY FV +
Sbjct: 23 DHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 82
Query: 139 TIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIE 198
+A AI LNG + + +IKV +A + LY+ L K ++K++E
Sbjct: 83 LNPNDAERAISTLNGLRL---QSKTIKVSYARPSSDS--IKDANLYISGLPKTMTQKDVE 137
Query: 199 EVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257
E+F YG I + ++ D+ SRG AF++F R A AI LNG ++Q V
Sbjct: 138 EMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKF 197
Query: 258 IADPKKPRTGEL 269
A P + + ++
Sbjct: 198 AASPNQVKNTQV 209
Score = 139 (54.0 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ D I D A LY++ +P+T T++D+ +F +G +I + D+ +G +
Sbjct: 106 KVSYARPSSDSIKD----ANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSR 161
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
G F++F EA +AI+ LNG PG + V+FA
Sbjct: 162 GVAFIRFDKRAEAEDAIKDLNGQKP-PGAAEQMTVKFA 198
Score = 87 (35.7 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
+++ L + + + ++F P+G + ++ ++RD + +G FV +H E A AI+ L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 242 NG 243
NG
Sbjct: 320 NG 321
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 188 (71.2 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 51/169 (30%), Positives = 91/169 (53%)
Query: 97 VPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156
+P+ TE ++ LF + G + + + + +RTG Y FV + +A A+ ++G Y
Sbjct: 48 LPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNGMDG-YE 106
Query: 157 FPGEQASIKVRFA-DGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD 215
G++ +KV FA E E + LYVG L +K++ E+F+ YG+I D+ ++R
Sbjct: 107 TRGKR--LKVAFARPSEYE---STSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRH 161
Query: 216 ELK-QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263
+ +SRG AF+QF A A G++ + + G+ +PL V+ + +K
Sbjct: 162 KFNNRSRGVAFLQFELVRDAEVAKYGMD-RYMIEGASRPLTVKFVEREK 209
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 205 (77.2 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 67/228 (29%), Positives = 108/228 (47%)
Query: 74 GFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ-- 131
G+ P D +D+ L + +P+ ++E++R LF G V L +DK G
Sbjct: 42 GYEDPMGDEPSDA--KTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHH 99
Query: 132 ------GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYV 185
GY FV + +A AI LNG + + +IKV +A + LY+
Sbjct: 100 TLGHSLGYGFVNYVNPSDAERAINTLNGLRL---QSKTIKVSYARPSSDG--IKDANLYI 154
Query: 186 GCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGT 244
L K ++K +E++F+ YG I + I+ D+ SRG AF++F R A AI LNG+
Sbjct: 155 SGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS 214
Query: 245 FTMRGSDQPLVVRIA-DPKKPRTGELRGN-YAFGTPSFG-PNFLEPVR 289
G+ +P+ V+ A +P + + +L Y + FG P +P R
Sbjct: 215 -KPSGASEPITVKFAANPNQSKNSQLLSQLYHTQSRRFGGPVHHQPQR 261
Score = 131 (51.2 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ D I D A LY++ +P+T T++++ +F ++G +I + D+ +G +
Sbjct: 136 KVSYARPSSDGIKD----ANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSR 191
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169
G F++F EA AI+ LNG G I V+FA
Sbjct: 192 GVAFIRFDKRSEAEEAIKDLNGSKP-SGASEPITVKFA 228
Score = 84 (34.6 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGL 241
++V L + + + ++F P+G + ++ ++RD + +G FV ++ E A AIS L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 242 NG 243
NG
Sbjct: 348 NG 349
>UNIPROTKB|K7EJK3 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589229 Uniprot:K7EJK3
Length = 162
Score = 185 (70.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 176 PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMAL 235
P + KL+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A
Sbjct: 24 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 83
Query: 236 AAISGLNGTFTMRGSDQPLVVRIADPKKPRT 266
AAI+ L+G+ TM G+ LVV+ AD K RT
Sbjct: 84 AAINALHGSQTMPGASSSLVVKFADTDKERT 114
Score = 148 (57.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V + + +E+D+R LFE GN+ E + + G +G FVK++ EA AI A
Sbjct: 30 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINA 88
Query: 151 LNGHYIFPGEQASIKVRFADGERE 174
L+G PG +S+ V+FAD ++E
Sbjct: 89 LHGSQTMPGASSSLVVKFADTDKE 112
>UNIPROTKB|B4DFI3 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 UniGene:Hs.655747 HGNC:HGNC:14058 EMBL:AK294109
IPI:IPI00645373 SMR:B4DFI3 STRING:B4DFI3 Ensembl:ENST00000334293
Uniprot:B4DFI3
Length = 320
Score = 200 (75.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 55/161 (34%), Positives = 88/161 (54%)
Query: 164 IKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC 223
I+V+ AD E KL+VG L+KQ S++++ +F P+G I++ ++R S+GC
Sbjct: 5 IQVKPADSESRG--GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGC 62
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT----GELRGNYAFGTPS 279
AFV+FS A AAI L+G+ TM G+ LVV+ AD K RT ++ G TPS
Sbjct: 63 AFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPS 122
Query: 280 ----FGPN--FLEPV-RPPPNLGNSAGGQILPNVSYRPQHI 313
F P + + + + + +++G + P V++ P HI
Sbjct: 123 LTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHI 163
Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 43/127 (33%), Positives = 65/127 (51%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA D + G KL+V + + +EED+ LF+ G + E + + G +G FVK
Sbjct: 9 PA-DSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVK 66
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F+ EA AI AL+G PG +S+ V+FAD ++E + ++ VG L T +
Sbjct: 67 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQM-VGQLGILTPSLTL 125
Query: 198 EEVFSPY 204
FSPY
Sbjct: 126 P--FSPY 130
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 192 (72.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 59/194 (30%), Positives = 102/194 (52%)
Query: 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFE 142
I++ A +YV + +E + LF + G V+ +PKD+ TGQ QGY FV+F E
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 143 EAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFS 202
+A AI+ +N ++ G+ I+V A ++ + +++G L + +K + + FS
Sbjct: 66 DADYAIKIMNMIKLY-GKP--IRVNKASAHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 203 PYGHI-EDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
+G I + I+RD + S+G AF+ F+ + + AAI +NG + ++P+ V A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPITVSYAF 178
Query: 261 PKKPRTGELRGNYA 274
KK GE G+ A
Sbjct: 179 -KKDSKGERHGSAA 191
Score = 55 (24.4 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 278 PSFGPNFLEPVRPPPNLGNSAGGQILPNVSY----RPQHIFNNSHPQVFSNWG 326
P P + P PPP + AGG P+ P H +SHP F G
Sbjct: 250 PGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPAH--GHSHPHPFPPGG 300
Score = 53 (23.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 381 RQSSTQN-VEQQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQSPQVAASP 432
R + QN + Q H + +++ P S NP S+ S +P P P + P
Sbjct: 193 RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP-PGMPPPGSFP 244
>UNIPROTKB|K7EQ97 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
Length = 154
Score = 184 (69.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 43/103 (41%), Positives = 63/103 (61%)
Query: 164 IKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC 223
I+V+ AD E KL+VG L+KQ S+ ++ +F +G+IE+ I+R S+GC
Sbjct: 5 IQVKPADSESRGD----RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGC 60
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT 266
AFV++S A AAI+ L+G+ TM G+ LVV+ AD K RT
Sbjct: 61 AFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT 103
Score = 148 (57.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V + + +E+D+R LFE GN+ E + + G +G FVK++ EA AI A
Sbjct: 19 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINA 77
Query: 151 LNGHYIFPGEQASIKVRFADGERE 174
L+G PG +S+ V+FAD ++E
Sbjct: 78 LHGSQTMPGASSSLVVKFADTDKE 101
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 192 (72.6 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 59/194 (30%), Positives = 102/194 (52%)
Query: 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFE 142
I++ A +YV + +E + LF + G V+ +PKD+ TGQ QGY FV+F E
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 143 EAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFS 202
+A AI+ +N ++ G+ I+V A ++ + +++G L + +K + + FS
Sbjct: 66 DADYAIKIMNMIKLY-GKP--IRVNKASAHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 203 PYGHI-EDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
+G I + I+RD + S+G AF+ F+ + + AAI +NG + ++P+ V A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPITVSYAF 178
Query: 261 PKKPRTGELRGNYA 274
KK GE G+ A
Sbjct: 179 -KKDSKGERHGSAA 191
Score = 54 (24.1 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 278 PSFGPNFLEPVRPPPNLGNSAGGQILPNVSY----RPQHIFNNSHPQVFSNWG 326
P P + P PPP + AGG P+ P H +SHP F G
Sbjct: 250 PGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPGH--GHSHPHPFPPGG 300
Score = 53 (23.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 381 RQSSTQN-VEQQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQSPQVAASP 432
R + QN + Q H + +++ P S NP S+ S +P P P + P
Sbjct: 193 RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP-PGMPPPGSFP 244
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 192 (72.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 59/194 (30%), Positives = 102/194 (52%)
Query: 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFE 142
I++ A +YV + +E + LF + G V+ +PKD+ TGQ QGY FV+F E
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 143 EAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFS 202
+A AI+ +N ++ G+ I+V A ++ + +++G L + +K + + FS
Sbjct: 66 DADYAIKIMNMIKLY-GKP--IRVNKASAHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 203 PYGHI-EDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
+G I + I+RD + S+G AF+ F+ + + AAI +NG + ++P+ V A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPITVSYAF 178
Query: 261 PKKPRTGELRGNYA 274
KK GE G+ A
Sbjct: 179 -KKDSKGERHGSAA 191
Score = 53 (23.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 278 PSFGPNFLEPVRPPPNLGNSAGGQILPNVSY----RPQHIFNNSHPQVF 322
P P + P PPP + AGG P+ P H +SHP F
Sbjct: 250 PGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPGH--GHSHPHPF 296
Score = 53 (23.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 381 RQSSTQN-VEQQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQSPQVAASP 432
R + QN + Q H + +++ P S NP S+ S +P P P + P
Sbjct: 193 RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP-PGMPPPGSFP 244
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 192 (72.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 59/194 (30%), Positives = 102/194 (52%)
Query: 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFE 142
I++ A +YV + +E + LF + G V+ +PKD+ TGQ QGY FV+F E
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 143 EAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFS 202
+A AI+ +N ++ G+ I+V A ++ + +++G L + +K + + FS
Sbjct: 66 DADYAIKIMNMIKLY-GKP--IRVNKASAHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 203 PYGHI-EDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
+G I + I+RD + S+G AF+ F+ + + AAI +NG + ++P+ V A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPITVSYAF 178
Query: 261 PKKPRTGELRGNYA 274
KK GE G+ A
Sbjct: 179 -KKDSKGERHGSAA 191
Score = 53 (23.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 381 RQSSTQN-VEQQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQSPQVAASP 432
R + QN + Q H + +++ P S NP S+ S +P P P + P
Sbjct: 193 RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP-PGMPPPGSFP 244
Score = 51 (23.0 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 17/53 (32%), Positives = 20/53 (37%)
Query: 278 PSFGPNFLEPVRPPPNLGNSAGGQILPNVSY----RPQHIFNNSHPQVFSNWG 326
P P + P PPP + AGG P P H +SHP F G
Sbjct: 250 PGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPGH--GHSHPHPFPPGG 300
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 192 (72.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 59/194 (30%), Positives = 102/194 (52%)
Query: 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFE 142
I++ A +YV + +E + LF + G V+ +PKD+ TGQ QGY FV+F E
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 143 EAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFS 202
+A AI+ +N ++ G+ I+V A ++ + +++G L + +K + + FS
Sbjct: 66 DADYAIKIMNMIKLY-GKP--IRVNKASAHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 203 PYGHI-EDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
+G I + I+RD + S+G AF+ F+ + + AAI +NG + ++P+ V A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPITVSYAF 178
Query: 261 PKKPRTGELRGNYA 274
KK GE G+ A
Sbjct: 179 -KKDSKGERHGSAA 191
Score = 53 (23.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 381 RQSSTQN-VEQQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQSPQVAASP 432
R + QN + Q H + +++ P S NP S+ S +P P P + P
Sbjct: 193 RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP-PGMPPPGSFP 244
Score = 51 (23.0 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 17/53 (32%), Positives = 20/53 (37%)
Query: 278 PSFGPNFLEPVRPPPNLGNSAGGQILPNVSY----RPQHIFNNSHPQVFSNWG 326
P P + P PPP + AGG P P H +SHP F G
Sbjct: 250 PGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPGH--GHSHPHPFPPGG 300
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 192 (72.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 59/194 (30%), Positives = 102/194 (52%)
Query: 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFE 142
I++ A +YV + +E + LF + G V+ +PKD+ TGQ QGY FV+F E
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 143 EAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFS 202
+A AI+ +N ++ G+ I+V A ++ + +++G L + +K + + FS
Sbjct: 66 DADYAIKIMNMIKLY-GKP--IRVNKASAHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 203 PYGHI-EDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
+G I + I+RD + S+G AF+ F+ + + AAI +NG + ++P+ V A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPITVSYAF 178
Query: 261 PKKPRTGELRGNYA 274
KK GE G+ A
Sbjct: 179 -KKDSKGERHGSAA 191
Score = 53 (23.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 381 RQSSTQN-VEQQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQSPQVAASP 432
R + QN + Q H + +++ P S NP S+ S +P P P + P
Sbjct: 193 RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP-PGMPPPGSFP 244
Score = 48 (22.0 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 16/53 (30%), Positives = 20/53 (37%)
Query: 278 PSFGPNFLEPVRPPPNLGNSAGGQILPNVSY----RPQHIFNNSHPQVFSNWG 326
P P + P PPP + A G P+ P H +SHP F G
Sbjct: 250 PGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGH--GHSHPHPFPPGG 300
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 199 (75.1 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE G + E L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T EEA AIR LN + I PG+ + V D R
Sbjct: 93 MMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K+ K+EI +E+ + D+ + D+ K +RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTK-NRGFAFVEYESHRAAAMA 200
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V ADP+K
Sbjct: 201 RRKLIPGTFQLWG--HTIQVDWADPEK 225
Score = 117 (46.2 bits), Expect = 0.00097, P = 0.00097
Identities = 46/161 (28%), Positives = 80/161 (49%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE--HGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148
+L++ +P+ +E+I ++ G V +V P + +G+ FV++ A A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMAR 201
Query: 149 RAL-NGHYIFPGEQASIKVRFADGEREHPVAPPDK---LYVGCLSKQTSKKEIEEVFSPY 204
R L G + G +I+V +AD E+E + LYV L T+++ I+ F+ +
Sbjct: 202 RKLIPGTFQLWGH--TIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF 259
Query: 205 --GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
G +E + K+ R AFV F +RE A+AA+S +NG
Sbjct: 260 KPGAVERV-------KKLRDYAFVHFFNREDAVAAMSVMNG 293
Score = 45 (20.9 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 453 TCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
T + W PE+ + E+ +++ + L + +S+T+E + + + +P + +L+D
Sbjct: 215 TIQVDWADPEKEV-DEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 199 (75.1 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE G + E L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T EEA AIR LN + I PG+ + V D R
Sbjct: 93 MMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K+ K+EI +E+ + D+ + D+ K +RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTK-NRGFAFVEYESHRAAAMA 200
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V ADP+K
Sbjct: 201 RRKLIPGTFQLWG--HTIQVDWADPEK 225
Score = 45 (20.9 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 453 TCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
T + W PE+ + E+ +++ + L + +S+T+E + + + +P + +L+D
Sbjct: 215 TIQVDWADPEKEV-DEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 199 (75.1 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE G + E L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T EEA AIR LN + I PG+ + V D R
Sbjct: 93 MMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K+ K+EI +E+ + D+ + D+ K +RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTK-NRGFAFVEYESHRAAAMA 200
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V ADP+K
Sbjct: 201 RRKLIPGTFQLWG--HTIQVDWADPEK 225
Score = 45 (20.9 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 453 TCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
T + W PE+ + E+ +++ + L + +S+T+E + + + +P + +L+D
Sbjct: 215 TIQVDWADPEKEV-DEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 200 (75.5 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 56/181 (30%), Positives = 91/181 (50%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L + +P+ T+E++R LF G + L +DK TGQ GY FV + E+A A+ +
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSF 103
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
NG + + +IKV +A + LYV + K + E+E +F P+G I
Sbjct: 104 NGLRL---QNKTIKVSYARPSNDQ--IKGSNLYVSGIPKSMTLHELESIFRPFGQIITSR 158
Query: 212 IVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELR 270
I+ D + S+G FV+F ++ A AI LNG+ S+Q + V+ A+ P + +
Sbjct: 159 ILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQ-ITVKFAN--NPASNNPK 215
Query: 271 G 271
G
Sbjct: 216 G 216
Score = 124 (48.7 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 37/124 (29%), Positives = 59/124 (47%)
Query: 47 HYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDI 106
+Y ++ + FNG + K + P+ D I S LYV+ +P++ T ++
Sbjct: 89 NYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSN----LYVSGIPKSMTLHEL 144
Query: 107 RPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166
+F G +I + D TG +G FV+F +EA AI+ LNG I G I V
Sbjct: 145 ESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGS-IPSGCSEQITV 203
Query: 167 RFAD 170
+FA+
Sbjct: 204 KFAN 207
Score = 101 (40.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLN 242
L+V LS T + ++FS +G I ++ I+RD +Q +G AFV S+ A A+ LN
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 243 GTFTMRGSDQPLVVRIADP 261
GT + G +V + + P
Sbjct: 436 GT-NLAGKTLQVVFKSSTP 453
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 199 (75.1 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE G + E L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T EEA AIR LN + I PG+ + V D R
Sbjct: 93 MMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K+ K+EI +E+ + D+ + D+ K +RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTK-NRGFAFVEYESHRAAAMA 200
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V ADP+K
Sbjct: 201 RRKLIPGTFQLWG--HTIQVDWADPEK 225
Score = 127 (49.8 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 48/161 (29%), Positives = 80/161 (49%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE--HGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148
+L++ +P+ +E+I ++ G V +V P + +G+ FV++ A A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMAR 201
Query: 149 RAL-NGHYIFPGEQASIKVRFADGEREHPVAPPDK---LYVGCLSKQTSKKEIEEVFSPY 204
R L G + G +I+V +AD E+E + LYV L T+++ I+ FS +
Sbjct: 202 RKLIPGTFQLWGH--TIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFSKF 259
Query: 205 --GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
G +E + K+ R AFV F HRE A+AA+S +NG
Sbjct: 260 KPGAVERV-------KKLRDYAFVHFFHREDAVAAMSVMNG 293
Score = 46 (21.3 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 453 TCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
T + W PE+ + E+ +++ + L + +S+T+E + + + +P + +L+D
Sbjct: 215 TIQVDWADPEKEV-DEETMQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRD 272
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 167 (63.8 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 51/153 (33%), Positives = 80/153 (52%)
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGC 187
Q GY FV + ++A AI LNG + + +IKV +A R + D LYV
Sbjct: 118 QSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYA---RPSSASIRDANLYVSG 171
Query: 188 LSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGLNGTFT 246
L K ++KE+E++FS YG I I+ D++ SRG F++F R A AI GLNG
Sbjct: 172 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-K 230
Query: 247 MRGSDQPLVVRIADPKKPRTGELRGNYAFGTPS 279
G+ +P+ V+ A+ +T + + + +P+
Sbjct: 231 PPGATEPITVKFANNPSQKTNQAILSQLYQSPN 263
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K + P+ I D A LYV+ +P+T T++++ LF ++G +I + D+ TG +
Sbjct: 151 KVSYARPSSASIRD----ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 206
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP--------VAPPDKL 183
G F++F EA AI+ LNG PG I V+FA+ + P++
Sbjct: 207 GVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRR 265
Query: 184 YVGCLSKQTSKKEIEEVFS-PYG 205
Y G L++Q + ++ + + YG
Sbjct: 266 YPGPLAQQAQRFRLDNLLNMAYG 288
Score = 75 (31.5 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 76 NHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYC 134
N +P D N L V +P+ T+E+++ LF G + L +DK TG Q
Sbjct: 34 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREY 93
Query: 135 FVKFTIFEE 143
F ++FE+
Sbjct: 94 FTDSSLFEK 102
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 199 (75.1 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE G + E L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T EEA AIR LN + I PG+ + V D R
Sbjct: 93 MMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K+ K+EI +E+ + D+ + D+ K +RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTK-NRGFAFVEYESHRAAAMA 200
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V ADP+K
Sbjct: 201 RRKLIPGTFQLWG--HTIQVDWADPEK 225
Score = 45 (20.9 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 453 TCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
T + W PE+ + E+ +++ + L + +S+T+E + + + +P + +L+D
Sbjct: 215 TIQVDWADPEKEV-DEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 199 (75.1 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE G + E L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T EEA AIR LN + I PG+ + V D R
Sbjct: 93 MMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K+ K+EI +E+ + D+ + D+ K +RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTK-NRGFAFVEYESHRAAAMA 200
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V ADP+K
Sbjct: 201 RRKLIPGTFQLWG--HTIQVDWADPEK 225
Score = 45 (20.9 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 453 TCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
T + W PE+ + E+ +++ + L + +S+T+E + + + +P + +L+D
Sbjct: 215 TIQVDWADPEKEV-DEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 199 (75.1 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE G + E L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T EEA AIR LN + I PG+ + V D R
Sbjct: 93 MMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K+ K+EI +E+ + D+ + D+ K +RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTK-NRGFAFVEYESHRAAAMA 200
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V ADP+K
Sbjct: 201 RRKLIPGTFQLWG--HTIQVDWADPEK 225
Score = 45 (20.9 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 453 TCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
T + W PE+ + E+ +++ + L + +S+T+E + + + +P + +L+D
Sbjct: 215 TIQVDWADPEKEV-DEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 199 (75.1 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE G + E L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T EEA AIR LN + I PG+ + V D R
Sbjct: 93 MMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K+ K+EI +E+ + D+ + D+ K +RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTK-NRGFAFVEYESHRAAAMA 200
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V ADP+K
Sbjct: 201 RRKLIPGTFQLWG--HTIQVDWADPEK 225
Score = 45 (20.9 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 453 TCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
T + W PE+ + E+ +++ + L + +S+T+E + + + +P + +L+D
Sbjct: 215 TIQVDWADPEKEV-DEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 194 (73.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 61/198 (30%), Positives = 95/198 (47%)
Query: 74 GFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDK------RT 127
G+ D D L V +P+ T++++R LF G V L +DK R+
Sbjct: 4 GYEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRS 63
Query: 128 -----GQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDK 182
G GY FV + ++A AI LNG + + +IKV FA E
Sbjct: 64 SSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRL---QSKTIKVSFARPSSES--IKDAN 118
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHREMALAAISGL 241
LY+ L + ++K++E++F P+GHI + ++ D+ SRG AF++F R A AI+
Sbjct: 119 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 178
Query: 242 NGTFTMRGSDQPLVVRIA 259
NG GS +P+ V+ A
Sbjct: 179 NG-HKPPGSSEPITVKFA 195
Score = 153 (58.9 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 51/166 (30%), Positives = 77/166 (46%)
Query: 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131
K F P+ + I D A LY++ +PRT T++D+ +F G++I + D+ TG +
Sbjct: 103 KVSFARPSSESIKD----ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSR 158
Query: 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHP-VA-------PPDKL 183
G F++F EA AI + NGH PG I V+FA ++ VA P +
Sbjct: 159 GVAFIRFDKRSEAEEAIASFNGHKP-PGSSEPITVKFAANPNQNKNVALLSQICHSPARR 217
Query: 184 YVGCLSKQTSKKEIEEVFSPYG--HIEDIFIVRDELKQSRG-CAFV 226
+ G + Q + FSP G H+ I V + G C FV
Sbjct: 218 FGGPVHHQAQRFR----FSPMGVDHMSSISSVNVASSATSGWCIFV 259
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 199 (75.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE G + E L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T EEA AIR LN + I PG+ + V D R
Sbjct: 93 MMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K+ K+EI +E+ + D+ + D+ K +RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTK-NRGFAFVEYESHRAAAMA 200
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V ADP+K
Sbjct: 201 RRKLIPGTFQLWG--HTIQVDWADPEK 225
Score = 118 (46.6 bits), Expect = 0.00091, P = 0.00091
Identities = 46/161 (28%), Positives = 80/161 (49%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE--HGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148
+L++ +P+ +E+I ++ G V +V P + +G+ FV++ A A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMAR 201
Query: 149 RAL-NGHYIFPGEQASIKVRFADGEREHPVAPPDK---LYVGCLSKQTSKKEIEEVFSPY 204
R L G + G +I+V +AD E+E + LYV L T+++ I+ F+ +
Sbjct: 202 RKLIPGTFQLWGH--TIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF 259
Query: 205 --GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
G +E + K+ R AFV F +RE A+AA+S +NG
Sbjct: 260 KPGSVERV-------KKLRDYAFVHFFNREDAVAAMSVMNG 293
>DICTYBASE|DDB_G0289337 [details] [associations]
symbol:DDB_G0289337 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289337 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000139 eggNOG:NOG145324 RefSeq:XP_636266.1
ProteinModelPortal:Q54HN5 EnsemblProtists:DDB0188369 GeneID:8627085
KEGG:ddi:DDB_G0289337 InParanoid:Q54HN5 OMA:MESINIS Uniprot:Q54HN5
Length = 1528
Score = 208 (78.3 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 52/176 (29%), Positives = 98/176 (55%)
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP 158
++ TE+++ F+ +G++ + DK T + +GY ++K+T A AI +NG +
Sbjct: 775 KSITEKNLEDCFKVYGSIESCRIVIDKDTNESKGYAYIKYTKTSSAALAIEEMNGKILEM 834
Query: 159 GEQAS-IKVRFAD--GEREHPVA-------PPD-KLYVGCLSKQTSKKEIEEVFSPYGHI 207
S I+V A+ G + P+ PP+ +L+V C +K +++E++ F +G++
Sbjct: 835 DSSCSPIRVLIAEAKGTKTKPLLSSDPEDHPPNSRLFVVC-NKSLTEQELKNKFKEFGNL 893
Query: 208 EDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
E++ ++R++ S+GCAF++FS A A+ +N + T G + PL V IA PK
Sbjct: 894 ENVRLIREKSTNDSKGCAFIKFSKASTAAIAMESINISNT--GEEYPLKVFIAQPK 947
Score = 130 (50.8 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 32/111 (28%), Positives = 58/111 (52%)
Query: 161 QASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQ 219
Q I + +++ + P ++++ C +K ++K +E+ F YG IE IV D + +
Sbjct: 747 QQQINQEILEQQQDQELVPYSRIFIIC-NKSITEKNLEDCFKVYGSIESCRIVIDKDTNE 805
Query: 220 SRGCAFVQFSHREMALAAISGLNGTFT-MRGSDQPLVVRIADPKKPRTGEL 269
S+G A+++++ A AI +NG M S P+ V IA+ K +T L
Sbjct: 806 SKGYAYIKYTKTSSAALAIEEMNGKILEMDSSCSPIRVLIAEAKGTKTKPL 856
Score = 93 (37.8 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIR 149
++L+V ++ TE++++ F+E GN+ V L ++K T +G F+KF+ A A+
Sbjct: 868 SRLFVV-CNKSLTEQELKNKFKEFGNLENVRLIREKSTNDSKGCAFIKFSKASTAAIAME 926
Query: 150 ALNGHYIFPGEQASIKVRFA 169
++N GE+ +KV A
Sbjct: 927 SIN--ISNTGEEYPLKVFIA 944
Score = 87 (35.7 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 39/148 (26%), Positives = 65/148 (43%)
Query: 175 HPVAPP---DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSH 230
+P A P +L+V C K S++ + +FS Y +E + +D+ +S+G A+V +S
Sbjct: 1249 NPYALPVSRQRLFVVC-HKSISQENLYRLFSRYPGMEYCDLKKDKNTGKSKGFAYVNYSS 1307
Query: 231 REMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSFGPNFLEPVRP 290
+ AL A + LNG + L V A+P G NF + P
Sbjct: 1308 PQAALLAKNDLNGI--KYPTSHTLKVVFAEP-------------LGIKQINNNFNNNLLP 1352
Query: 291 PPNLGNSAGGQILPNVSYRPQHIFNNSH 318
P + Q+L N + +I NN++
Sbjct: 1353 PTQIFPQKPTQLLQNTNNNYNNINNNNN 1380
Score = 49 (22.3 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 8 YITDP-PEFNPNSFSGNYCSWSSDD----HRHNFPDNYHSHHRRHYQYDQMSSE 56
Y P ++PN F Y ++ + H+ F YH ++ QY + +
Sbjct: 624 YFPTPMAPYDPNQFYLQYSNFMNQQFIQQHQQQFQYQYHHQAQQQQQYQYQAQQ 677
Score = 42 (19.8 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 399 SESESPRSGNNPQTSASASTIPTVPQSPQVAAS 431
+ + + + NN T+ + S +PT S + AS
Sbjct: 999 NNNNNNNNNNNNSTNLNQSKVPTNESSSTLTAS 1031
Score = 39 (18.8 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 7/48 (14%), Positives = 24/48 (50%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNN 409
+N +++ + ++ + ++ +N + +N + I +E+E+ N
Sbjct: 1070 ENKNENEKENDNQNEKENENENENKNKNENKNENEIKNENENENENEN 1117
Score = 38 (18.4 bits), Expect = 3.1e-12, Sum P(3) = 3.1e-12
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNN 409
QN + ++ + K + ++ +N + +N + +E+E+ N
Sbjct: 1082 QNEKENENENENKNKNENKNENEIKNENENENENENENENENENENKN 1129
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 187 (70.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 64/207 (30%), Positives = 106/207 (51%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ P+FE+ G++ E L
Sbjct: 24 NGQ-RKFGGPPPGWEGPPPPR----G--REVFVGKIPRDMYEDELVPVFEQAGHIYEFRL 76
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +GY FV +T E+A AI+ L+ + I PG+ + V D R
Sbjct: 77 MMEF-SGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSL-DNCR-------- 126
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFIVR---DELKQSRGCAFVQF-SHREMALA 236
L++G + K K+EI EE+ + D+ + D +K +RG AFV++ SH+ A+A
Sbjct: 127 -LFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDRMK-NRGFAFVEYESHKAAAMA 184
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKK 263
+ GTF + G + V A+P+K
Sbjct: 185 RRKLIPGTFQLWG--HTIQVDWAEPEK 209
Score = 54 (24.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 453 TCESRWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
T + W +PE+ L E+ +++ + L + +S+T+E +++ QL+P + +L D
Sbjct: 199 TIQVDWAEPEKEL-DEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTD 256
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 178 (67.7 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 48/174 (27%), Positives = 91/174 (52%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L+V + +E ++ +FE+HG + ++L K++RTG+ +GY F+ + +A A +L
Sbjct: 402 LFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKLQASTAKSSL 461
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI-EEVFSPYGHIEDI 210
G +F + +++V +A+ ++V L + + I +VFSP+G I+D
Sbjct: 462 -GSIVF--NRRTLRVDWAENCNTMESMHSKTIFVDRLPRSFADVPILRKVFSPFGKIKDC 518
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
+V + Q RG AF+ +++ E A A +N ++G + V A+P KP
Sbjct: 519 NVVPNYYGQPRGFAFIDYNNVEDAEKAQRMMNEK-DLKG--YKIRVNFANPSKP 569
Score = 70 (29.7 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 361 RQNSQLSQQAVSDMQKQLH--LRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASAST 418
+Q Q QQA Q+Q +Q S Q +QQQ+ + + + +N QT A ++
Sbjct: 846 QQQQQQQQQAQQQQQQQAQQQAQQQSQQQAQQQQSQQMQGFYGQMNNANSNKQTGAQSTI 905
Query: 419 IP-TVPQSPQVAASPE--CDWSEHTCPD 443
P T + Q S + +W + P+
Sbjct: 906 SPNTASATNQNNFSHQSAANWQGYFTPE 933
Score = 62 (26.9 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 468 EQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQDPSVSASEQDHLQVQTK 527
+QQ E+Q+K Q Q +++ Q Q+ Q Q ++ Q Q A +Q Q Q +
Sbjct: 823 QQQQERQRKQQEALQKQQQIQQLQQQQQQQQQA----QQQQQQQAQQQAQQQSQQQAQQQ 878
Query: 528 SS 529
S
Sbjct: 879 QS 880
Score = 60 (26.2 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 33/141 (23%), Positives = 56/141 (39%)
Query: 390 QQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQSPQVA-ASPECDWSEHTCPDGNKYY 448
Q Q + V+ P+S NNP + A+ Q+ Q+A A + E G +
Sbjct: 726 QSQQGYPQVNSMSVPQSNNNPLINQQANL-----QAQQLASAQVQIQLMEQKLK-GQESL 779
Query: 449 YNCETCESRWDKPEEYLLFEQQIEKQQK---LQNGSQSVSSTKEVAQTQEVQL-QPHVFR 504
+ + + ++ + Q EKQQ+ L+ Q ++ Q QE Q Q +
Sbjct: 780 IRA--AQQKVVQAQQQAQQQVQREKQQREALLRQQQQQQQQQQQQQQQQERQRKQQEALQ 837
Query: 505 KKVQLQDPSVSASEQDHLQVQ 525
K+ Q+Q +Q Q Q
Sbjct: 838 KQQQIQQLQQQQQQQQQAQQQ 858
Score = 59 (25.8 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 457 RWDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQDPSVSA 516
R + E LL +QQ ++QQ+ Q Q K+ Q+ Q + +++ Q Q
Sbjct: 800 REKQQREALLRQQQQQQQQQQQQQQQQERQRKQQEALQKQQQIQQLQQQQQQQQQAQQQQ 859
Query: 517 SEQDHLQVQTKS 528
+Q Q Q +S
Sbjct: 860 QQQAQQQAQQQS 871
Score = 55 (24.4 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 27/161 (16%), Positives = 58/161 (36%)
Query: 365 QLSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTIPTVPQ 424
Q++ +V + Q + +Q ++ V + E G A+ + Q
Sbjct: 733 QVNSMSVPQSNNNPLINQQANLQAQQLASAQVQIQLMEQKLKGQESLIRAAQQKVVQAQQ 792
Query: 425 SPQVAASPECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFEQQIEKQQKLQNGSQSV 484
Q E E + + + + ++ + ++ ++KQQ++Q Q
Sbjct: 793 QAQQQVQREKQQREALLRQQQQQQQQQQQQQQQQERQRKQ---QEALQKQQQIQQLQQQQ 849
Query: 485 SSTKEVAQTQEVQLQPHVFRKKVQLQDPSVSASEQDHLQVQ 525
++ Q Q+ Q Q ++ Q Q A +Q Q+Q
Sbjct: 850 QQQQQAQQQQQQQAQ-----QQAQQQSQQ-QAQQQQSQQMQ 884
Score = 45 (20.9 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 267 GELRGNYAFGTPSFGPNFLEPVRPPPNLG---NSAG-GQILPNVSYRPQHIFNNSH 318
G + G+ GP +P PPP+ G + +G G + + + QH N H
Sbjct: 650 GGVNGSGPIAMERGGPMHHQPYGPPPHHGPMLHQSGYGSQMQHQFSQMQHQHYNEH 705
Score = 45 (20.9 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 16/73 (21%), Positives = 25/73 (34%)
Query: 361 RQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTIP 420
RQ Q QQ Q+Q R+ +QQQ + + + ++ Q A
Sbjct: 810 RQQQQQQQQQQQQQQQQERQRKQQEALQKQQQIQQLQQQQQQQQQAQQQQQQQAQQQAQQ 869
Query: 421 TVPQSPQVAASPE 433
Q Q S +
Sbjct: 870 QSQQQAQQQQSQQ 882
Score = 44 (20.5 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 489 EVAQTQEVQLQPHVFRKKVQLQDPSVSASEQDHLQVQTKSSPVV 532
+ Q Q+Q + +K++ Q+ + A++Q +Q Q ++ V
Sbjct: 755 QAQQLASAQVQIQLMEQKLKGQESLIRAAQQKVVQAQQQAQQQV 798
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 190 (71.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 59/188 (31%), Positives = 95/188 (50%)
Query: 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEE 143
N S K+Y+ + R+ + + F GN++ + KD+ G +GY FV F E
Sbjct: 107 NSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRGYGFVHFDSEEA 165
Query: 144 AGNAIRALNGHYIFPGEQASIKVRFADG-EREHPVAPPDK-LYVGCLSKQTSKKEIEEVF 201
A AI +NG + ++ + V+F +RE A K LYV LS++ +++ + E+F
Sbjct: 166 ARAAIEKVNG-MLCNNQKVHV-VKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 202 SPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADP 261
PYG I ++ DE +SR FV + + + ALAA+ GL+G G ++ L V A
Sbjct: 224 EPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGK--QLGDNKFLYVARALS 281
Query: 262 KKPRTGEL 269
K R E+
Sbjct: 282 KAERQQEI 289
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 193 (73.0 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 54/197 (27%), Positives = 100/197 (50%)
Query: 72 KRGFNHPAPDHINDS---GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + GI +++V +PR E+++ PLFE+ G + ++ L D +G
Sbjct: 113 QRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSG 172
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
Q +GY F+ F E A A++ + + I PG+ + + A+ ++L+VG +
Sbjct: 173 QNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVAN----------NRLFVGSI 222
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K+ I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 223 PKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 282
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 283 VKVWGN--VVTVEWADP 297
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 47/174 (27%), Positives = 89/174 (51%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P+ T+E+I F + +++V+L P DK+ + +G+CF+++ + A
Sbjct: 216 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 273
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 274 ARRRLMSGKVKVWGNV--VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 331
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256
+G +E + K+ + AFV F R A+ A+ +NG + G + +V+
Sbjct: 332 EFGKLERV-------KKLKDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVL 377
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 193 (73.0 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 42/102 (41%), Positives = 65/102 (63%)
Query: 164 IKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC 223
I+++ AD E+ + V KL++G +SK+ ++ +I +FSP+G IE+ I+R SRGC
Sbjct: 5 IQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC 63
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
AFV FS R MA AI ++ + TM G P+VV+ AD +K +
Sbjct: 64 AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK 105
Score = 106 (42.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 9 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 67
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 68 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 104
Score = 70 (29.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 302 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 359
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 360 YDNPVSAQAAIQAMNG 375
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 193 (73.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 42/102 (41%), Positives = 65/102 (63%)
Query: 164 IKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC 223
I+++ AD E+ + V KL++G +SK+ ++ +I +FSP+G IE+ I+R SRGC
Sbjct: 5 IQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC 63
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
AFV FS R MA AI ++ + TM G P+VV+ AD +K +
Sbjct: 64 AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK 105
Score = 106 (42.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA +++ KL++ V + E DIR +F G + E + + G +G FV
Sbjct: 9 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVT 67
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
F+ A NAI+A++ G + I V+FAD +++
Sbjct: 68 FSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 104
Score = 70 (29.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQ 227
A ++E P L++ L ++ ++I ++F P+G++ + D+ C FV
Sbjct: 308 AGSQKEGPEGA--NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 365
Query: 228 FSHREMALAAISGLNG 243
+ + A AAI +NG
Sbjct: 366 YDNPVSAQAAIQAMNG 381
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 191 (72.3 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 40/85 (47%), Positives = 55/85 (64%)
Query: 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241
KL+VG L KQ S+ ++ +F P+G IE+ I+R S+GCAFV++S A AAIS L
Sbjct: 4 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSL 63
Query: 242 NGTFTMRGSDQPLVVRIADPKKPRT 266
+G+ TM G+ LVV+ AD K RT
Sbjct: 64 HGSQTMPGASSSLVVKFADTDKERT 88
Score = 137 (53.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V + + +E+D+R LFE G + E + + G +G FVK++ EA AI +
Sbjct: 4 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGP-DGASKGCAFVKYSSHAEAQAAISS 62
Query: 151 LNGHYIFPGEQASIKVRFADGERE 174
L+G PG +S+ V+FAD ++E
Sbjct: 63 LHGSQTMPGASSSLVVKFADTDKE 86
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 195 (73.7 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 55/201 (27%), Positives = 100/201 (49%)
Query: 68 FIGRKRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKD 124
++ +R + P PD + P+ +++V +PR E+++ PLFE+ G + ++ L D
Sbjct: 47 YVAGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMD 106
Query: 125 KRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLY 184
TG +GY FV F E A A++ N H I G+ + + A+ ++L+
Sbjct: 107 PLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN----------NRLF 156
Query: 185 VGCLSKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISG 240
VG + K +K++I E FS + D+ + D+ K++RG F+++ H+ A A
Sbjct: 157 VGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRL 216
Query: 241 LNGTFTMRGSDQPLVVRIADP 261
++G + G+ V ADP
Sbjct: 217 MSGKVKVWGNVG--TVEWADP 235
Score = 143 (55.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 59/224 (26%), Positives = 109/224 (48%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 154 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 211
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G +++ +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 212 ARRRLMSGKVKVWGNVGTVE--WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFS 269
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV-VRIADP 261
+G +E + K+ + AF+ F R+ A+ A+ +NG + G + +V + D
Sbjct: 270 QFGKLERV-------KKLKDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFAKPPDQ 321
Query: 262 K-KPRTGELRG--NYAFGTPSF-GPNFLEPVRPPPNLGNSAGGQ 301
K K R + + N + + GP P PPP G GG+
Sbjct: 322 KRKERKAQRQAAKNQMYDDYYYYGP----PHMPPPTRGRGRGGR 361
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 195 (73.7 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 55/201 (27%), Positives = 100/201 (49%)
Query: 68 FIGRKRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKD 124
++ +R + P PD + P+ +++V +PR E+++ PLFE+ G + ++ L D
Sbjct: 47 YVAGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMD 106
Query: 125 KRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLY 184
TG +GY FV F E A A++ N H I G+ + + A+ ++L+
Sbjct: 107 PLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN----------NRLF 156
Query: 185 VGCLSKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISG 240
VG + K +K++I E FS + D+ + D+ K++RG F+++ H+ A A
Sbjct: 157 VGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRL 216
Query: 241 LNGTFTMRGSDQPLVVRIADP 261
++G + G+ V ADP
Sbjct: 217 MSGKVKVWGNVG--TVEWADP 235
Score = 143 (55.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 59/224 (26%), Positives = 109/224 (48%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 154 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 211
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G +++ +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 212 ARRRLMSGKVKVWGNVGTVE--WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFS 269
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV-VRIADP 261
+G +E + K+ + AF+ F R+ A+ A+ +NG + G + +V + D
Sbjct: 270 QFGKLERV-------KKLKDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFAKPPDQ 321
Query: 262 K-KPRTGELRG--NYAFGTPSF-GPNFLEPVRPPPNLGNSAGGQ 301
K K R + + N + + GP P PPP G GG+
Sbjct: 322 KRKERKAQRQAAKNQMYDDYYYYGP----PHMPPPTRGRGRGGR 361
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 197 (74.4 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 62/197 (31%), Positives = 99/197 (50%)
Query: 72 KRGFNHPAPD-HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQ 130
+R + P P N G +++ +P+ E+++ PLFE G + ++ L D TG
Sbjct: 145 QRKYGGPPPHWEGNVPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTN 204
Query: 131 QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSK 190
+GY FV FT E A NA+R L+ H I PG+ +K+ + P +L+VG + K
Sbjct: 205 RGYAFVTFTNREAAVNAVRQLDNHEIKPGK--CLKINIS--------VPNLRLFVGNIPK 254
Query: 191 QTSKKEIEEVFSPY--GHIEDI-FIVRDELKQSRGCAFVQF-SHREMALAAISGLNGTFT 246
K EI E F G E I + D+ K++RG F+++ SH+ +LA G
Sbjct: 255 SKGKDEILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIK 314
Query: 247 MRGSDQPLVVRIADPKK 263
+ G D ++V ADP++
Sbjct: 315 VWGCD--IIVDWADPQE 329
Score = 140 (54.3 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 49/169 (28%), Positives = 85/169 (50%)
Query: 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKF 138
IN S +L+V +P++ +++I F + + EV++ P DK+ + +G+CF+++
Sbjct: 238 INISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDKK--KNRGFCFLEY 295
Query: 139 TIFEEAGNAIRALN-GHYIFPGEQASIKVRFADGEREHPVAPPDK---LYVGCLSKQTSK 194
+ A A R L G G I V +AD + E K LYV L++ S+
Sbjct: 296 ESHKAASLAKRRLGTGRIKVWG--CDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSE 353
Query: 195 KEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
+++E F YG +E + ++D AF+ F R+ A+ A+ GLNG
Sbjct: 354 DKLKEQFEQYGKVERVKKIKDY-------AFIHFEDRDSAVEAMRGLNG 395
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 192 (72.6 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 59/194 (30%), Positives = 102/194 (52%)
Query: 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFE 142
I++ A +YV + +E + LF + G V+ +PKD+ TGQ QGY FV+F E
Sbjct: 6 ISERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 143 EAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFS 202
+A AI+ +N ++ G+ I+V A ++ + +++G L + +K + + FS
Sbjct: 66 DADYAIKIMNMIKLY-GKP--IRVNKASAHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 203 PYGHI-EDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
+G I + I+RD + S+G AF+ F+ + + AAI +NG + ++P+ V A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPITVSYAF 178
Query: 261 PKKPRTGELRGNYA 274
KK GE G+ A
Sbjct: 179 -KKDSKGERHGSAA 191
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 192 (72.6 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 59/194 (30%), Positives = 102/194 (52%)
Query: 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFE 142
I++ A +YV + +E + LF + G V+ +PKD+ TGQ QGY FV+F E
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 143 EAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFS 202
+A AI+ +N ++ G+ I+V A ++ + +++G L + +K + + FS
Sbjct: 66 DADYAIKIMNMIKLY-GKP--IRVNKASAHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 203 PYGHI-EDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
+G I + I+RD + S+G AF+ F+ + + AAI +NG + ++P+ V A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPITVSYAF 178
Query: 261 PKKPRTGELRGNYA 274
KK GE G+ A
Sbjct: 179 -KKDSKGERHGSAA 191
Score = 42 (19.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 261 PKKPRTGELR-GNYAFGTPSFGPNFLEPVRPP---PNLGNSAGGQILPNVSY 308
P +P G G G P GP+F P+ P P+ G ++P Y
Sbjct: 329 PPRPPPGMPHPGPPPMGMPPRGPHFGSPMGHPGPMPHHGMRGPPPLMPPHGY 380
Score = 41 (19.5 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 15/56 (26%), Positives = 18/56 (32%)
Query: 278 PSFGPNFLEPVRPPPNLGNSAGGQILPNVSYRPQHIFNNSHPQVFSNWGNQEAATP 333
P P + P PPP + AG P P + HP F G P
Sbjct: 250 PGAMPPGMPPAMPPPPMPPGAGAPG-PPTGAAPTG-GHPPHPHAFPPGGMHHPGMP 303
>UNIPROTKB|F1P022 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02039408 EMBL:AADN02039409
EMBL:AADN02039410 EMBL:AADN02039411 EMBL:AADN02039412
EMBL:AADN02039413 EMBL:AADN02039414 EMBL:AADN02039415
EMBL:AADN02039416 EMBL:AADN02039417 EMBL:AADN02039418
EMBL:AADN02039419 EMBL:AADN02039420 EMBL:AADN02039421
EMBL:AADN02039422 EMBL:AADN02039423 EMBL:AADN02039424
EMBL:AADN02039425 EMBL:AADN02039426 EMBL:AADN02039427
EMBL:AADN02039428 EMBL:AADN02039429 EMBL:AADN02039430
EMBL:AADN02039431 EMBL:AADN02039432 EMBL:AADN02039433
IPI:IPI00574286 Ensembl:ENSGALT00000040033 ArrayExpress:F1P022
Uniprot:F1P022
Length = 325
Score = 189 (71.6 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 41/97 (42%), Positives = 61/97 (62%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQF 228
AD E+ + V KL++G +SK+ ++ +I +FSP+G IE+ I+R SRGCAFV F
Sbjct: 2 ADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTF 60
Query: 229 SHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
S R MA AI ++ + TM G P+VV+ AD +K +
Sbjct: 61 STRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK 97
>UNIPROTKB|F1M3I9 [details] [associations]
symbol:Brunol4 "Protein Brunol4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00358672
Ensembl:ENSRNOT00000019548 ArrayExpress:F1M3I9 Uniprot:F1M3I9
Length = 306
Score = 183 (69.5 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241
KL+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A AAI+ L
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61
Query: 242 NGTFTMRGSDQPLVVRIADPKKPRT 266
+G+ TM G+ LVV+ AD K RT
Sbjct: 62 HGSQTMPGASSSLVVKFADTDKERT 86
Score = 148 (57.2 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V + + +E+D+R LFE GN+ E + + G +G FVK++ EA AI A
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINA 60
Query: 151 LNGHYIFPGEQASIKVRFADGERE 174
L+G PG +S+ V+FAD ++E
Sbjct: 61 LHGSQTMPGASSSLVVKFADTDKE 84
Score = 46 (21.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 159 GEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSP-----YGHIEDIFIV 213
G+ A+ V FA+G +P P Q + +++ P YG I F
Sbjct: 199 GQPAAEAV-FANGIHPYPAQSP----TAADPLQQAYAGVQQYAGPAYPAAYGQISQAFPQ 253
Query: 214 RDEL-KQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+ Q + FV F + A AI +NG F + G + L V++ PK
Sbjct: 254 PPPMIPQQQREGFVSFDNPASAQTAIQAMNG-FQI-GMKR-LKVQLKRPK 300
Score = 43 (20.2 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 152 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 184
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 161 (61.7 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 55/188 (29%), Positives = 91/188 (48%)
Query: 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIR 149
A L + + TE + LF + V++V +PKDK T Q G +V+F +A A++
Sbjct: 13 ACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALK 72
Query: 150 ALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED 209
+ +F E IK++ E + V L++G L ++ + + FS +G I
Sbjct: 73 VMKFVRLFNKE---IKIK---KENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTI-- 124
Query: 210 IF---IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT 266
IF ++RDE S+G AF+ F E + AAI +N F ++P+ V A +K +
Sbjct: 125 IFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLC---NKPISVTYA--RKKDS 179
Query: 267 GELRGNYA 274
E G+ A
Sbjct: 180 NERHGSSA 187
Score = 73 (30.8 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 465 LLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQDPSVSASEQDHLQV 524
++ +QQI++QQ+LQ Q +++ Q Q++Q Q +++ Q Q +Q Q
Sbjct: 243 IIHQQQIQQQQQLQQQQQQQLQLQQL-QLQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 301
Query: 525 QTK---SSPVVHP 534
Q P+ HP
Sbjct: 302 QHHPHHQHPIPHP 314
Score = 59 (25.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 361 RQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQ 392
+Q Q QQ Q+QL L+Q Q ++QQQ
Sbjct: 246 QQQIQQQQQLQQQQQQQLQLQQLQLQQLQQQQ 277
Score = 57 (25.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 361 RQNSQLSQQAVSDMQ-KQLHLRQSSTQNVEQQQ 392
+Q QL QQ +Q +QL L+Q Q +QQQ
Sbjct: 250 QQQQQLQQQQQQQLQLQQLQLQQLQQQQQQQQQ 282
Score = 52 (23.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQNSH 395
Q Q QQ Q+Q +Q Q +QQQ H
Sbjct: 271 QQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHH 304
Score = 50 (22.7 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQ 392
Q QL QQ Q+Q +Q Q +QQQ
Sbjct: 269 QLQQLQQQQQQQQQQQQQQQQQQQQQQQQQQ 299
Score = 50 (22.7 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 361 RQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQ 392
+Q QL Q + +Q+Q +Q Q +QQQ
Sbjct: 260 QQQLQLQQLQLQQLQQQQQQQQQQQQQQQQQQ 291
Score = 47 (21.6 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 470 QIEKQQKLQNGSQSVSSTKEVAQTQEVQLQP 500
Q ++QQ S S ST Q Q+ Q QP
Sbjct: 202 QQQQQQSSSTSSTSTISTSTPQQQQQQQSQP 232
Score = 46 (21.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQ 392
Q QL Q + Q+Q +Q Q +QQQ
Sbjct: 264 QLQQLQLQQLQQQQQQQQQQQQQQQQQQQQQ 294
Score = 46 (21.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 361 RQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQN 393
+Q Q QQ Q+Q +Q Q +QQQ+
Sbjct: 271 QQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQH 303
Score = 45 (20.9 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 365 QLSQQAVSDMQKQLHLRQSSTQNVEQQQNSH 395
Q QQ Q+Q +Q Q +QQ + H
Sbjct: 276 QQQQQQQQQQQQQQQQQQQQQQQQQQQHHPH 306
Score = 44 (20.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 362 QNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQ 392
Q QL Q Q+Q +Q Q +QQQ
Sbjct: 266 QQLQLQQLQQQQQQQQQQQQQQQQQQQQQQQ 296
Score = 43 (20.2 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 361 RQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQ 392
+Q QL Q + Q Q +Q Q +QQQ
Sbjct: 258 QQQQQLQLQQLQLQQLQQQQQQQQQQQQQQQQ 289
Score = 42 (19.8 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 471 IEKQQKLQNGSQSVSSTKEVAQTQEVQLQ 499
+ +QQ+ Q+ S S +ST + Q+ Q Q
Sbjct: 200 LNQQQQQQSSSTSSTSTISTSTPQQQQQQ 228
>ZFIN|ZDB-GENE-070912-150 [details] [associations]
symbol:si:ch211-168n8.1 "si:ch211-168n8.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070912-150 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CT027714 IPI:IPI00833044 Ensembl:ENSDART00000122509
Uniprot:E7F1Z5
Length = 187
Score = 171 (65.3 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 188 LSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247
L+KQ +++++ +F PYG IE+ ++R S+GCAFV+FS A +AI GL+G+ TM
Sbjct: 2 LNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHTEAQSAIGGLHGSQTM 61
Query: 248 RGSDQPLVVRIADPKKPRT----GELRGNYAFGTPS 279
G+ LVV+ AD K RT ++ G + PS
Sbjct: 62 PGASSSLVVKFADTDKERTIRRMQQMVGQFGIFNPS 97
Score = 131 (51.2 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 102 TEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161
TEED+ LFE +G + E + + G +G FVKF+ EA +AI L+G PG
Sbjct: 7 TEEDVYRLFEPYGVIEECTVLRGP-DGNSKGCAFVKFSTHTEAQSAIGGLHGSQTMPGAS 65
Query: 162 ASIKVRFADGEREHPV 177
+S+ V+FAD ++E +
Sbjct: 66 SSLVVKFADTDKERTI 81
>UNIPROTKB|F1P311 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02033464 IPI:IPI01017320
Ensembl:ENSGALT00000038509 ArrayExpress:F1P311 Uniprot:F1P311
Length = 328
Score = 188 (71.2 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 40/97 (41%), Positives = 60/97 (61%)
Query: 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQF 228
AD E+ + V KL++G +SK+ ++ +I +FSP+G IE+ I+R SRGCAFV F
Sbjct: 2 ADSEKNNAVEDR-KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTF 60
Query: 229 SHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
+ R MA AI ++ TM G P+VV+ AD +K +
Sbjct: 61 TTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 97
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 197 (74.4 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 55/197 (27%), Positives = 100/197 (50%)
Query: 72 KRGFNHPAPDHINDS---GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + GI +++V +PR E+++ PLFEE G + ++ L D +G
Sbjct: 144 QRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSG 203
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
Q +GY F+ F E A A++ + + I PG+ + + A+ ++L+VG +
Sbjct: 204 QNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVAN----------NRLFVGSI 253
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K+ I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 254 PKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 313
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 314 VKVWGN--VVTVEWADP 328
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 58/221 (26%), Positives = 105/221 (47%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P+ T+E+I F + +++V+L P DK+ + +G+CF+++ + A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWGNV--VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 362
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G +E + K+ + AFV F R A+ A+ +NG + G + +V+ P
Sbjct: 363 EFGKLERV-------KKLKDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLA-KPPD 413
Query: 263 KPRTGELRGNYAFGTPSFGPNFLEPV--RPPPNLGNSAGGQ 301
K R A + ++ + P PPP G GG+
Sbjct: 414 KKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGR 454
Score = 42 (19.8 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 27/105 (25%), Positives = 39/105 (37%)
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSF------GPNFLEPVRP 290
A+ G G RG+ P R A P + R G + G P GP + R
Sbjct: 497 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 556
Query: 291 PP----NLGNSAGGQILPNVSYRPQHIFNNSHPQVFSNWGNQEAA 331
N G + GG+ + +P ++ Q NWG+Q A
Sbjct: 557 SRGARGNRGGNVGGKRKADGYNQPDSKRRQTNNQ--QNWGSQPIA 599
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 192 (72.6 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 60/184 (32%), Positives = 92/184 (50%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRT-------------GQQQGYCFVKF 138
L V +P+T TE++IR LF G + V L +DK GQ GY FV +
Sbjct: 151 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210
Query: 139 TIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIE 198
++A A+ LNG + + +IKV FA + LYV L K +++E+E
Sbjct: 211 VRPQDAEQAVNVLNGLRL---QNKTIKVSFARPSSD--AIKGANLYVSGLPKTMTQQELE 265
Query: 199 EVFSPYGHIEDIFIVRDELK--QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256
+F+P+G I I+++ Q++G F++F RE A AI LNGT T P+VV
Sbjct: 266 AIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGT-TPSSCTDPIVV 324
Query: 257 RIAD 260
+ ++
Sbjct: 325 KFSN 328
Score = 111 (44.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 33/108 (30%), Positives = 52/108 (48%)
Query: 47 HYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDI 106
+Y Q + + + NG + K F P+ D I A LYV+ +P+T T++++
Sbjct: 209 NYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKG----ANLYVSGLPKTMTQQEL 264
Query: 107 RPLFEEHGNVIEV-VLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG 153
+F G +I +L Q +G F++F EEA AI ALNG
Sbjct: 265 EAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 93 (37.8 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 183 LYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDEL-KQSRGCAFVQFSHREMALAAISGL 241
+++ L+ +T + + ++F P+G ++ + IV+D Q +G FV ++ + A AI L
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 242 NGTFTM 247
NG +TM
Sbjct: 464 NG-YTM 468
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 186 (70.5 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 40/89 (44%), Positives = 58/89 (65%)
Query: 179 PPD-KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAA 237
P D KL+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A AA
Sbjct: 6 PEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAA 65
Query: 238 ISGLNGTFTMRGSDQPLVVRIADPKKPRT 266
I+ L+G+ TM G+ LVV+ AD K RT
Sbjct: 66 INALHGSQTMPGASSSLVVKFADTDKERT 94
Score = 148 (57.2 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V + + +E+D+R LFE GN+ E + + G +G FVK++ EA AI A
Sbjct: 10 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINA 68
Query: 151 LNGHYIFPGEQASIKVRFADGERE 174
L+G PG +S+ V+FAD ++E
Sbjct: 69 LHGSQTMPGASSSLVVKFADTDKE 92
Score = 79 (32.9 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 28/93 (30%), Positives = 48/93 (51%)
Query: 172 EREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFS 229
+RE P L++ L ++ E+ ++F P+G++ +F+ R QS+ FV F
Sbjct: 269 QREGPEGC--NLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDR-ATNQSKCFGFVSFD 325
Query: 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+ A AAI +NG F + G + L V++ PK
Sbjct: 326 NPASAQAAIQAMNG-FQI-GMKR-LKVQLKRPK 355
Score = 43 (20.2 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 160 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 192
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 193 (73.0 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 54/197 (27%), Positives = 100/197 (50%)
Query: 72 KRGFNHPAPDHINDS---GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + GI +++V +PR E+++ PLFE+ G + ++ L D +G
Sbjct: 144 QRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSG 203
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
Q +GY F+ F E A A++ + + I PG+ + + A+ ++L+VG +
Sbjct: 204 QNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVAN----------NRLFVGSI 253
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K+ I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 254 PKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 313
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 314 VKVWGN--VVTVEWADP 328
Score = 155 (59.6 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 59/225 (26%), Positives = 106/225 (47%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P+ T+E+I F + +++V+L P DK+ + +G+CF+++ + A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWGNV--VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 362
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G +E + K+ + AFV F R A+ A+ +NG + G + +V+ P
Sbjct: 363 EFGKLERV-------KKLKDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLA-KPPD 413
Query: 263 KPRTGELRGNYAFGTPSFGPNFLEPV--RPPPNLGNSAGGQILPN 305
K R A + ++ + P PPP G GG P+
Sbjct: 414 KKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGXYPPD 458
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 191 (72.3 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 73/256 (28%), Positives = 120/256 (46%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
+YV + T T++ + LF ++G V VV+ +D G+ +G+ FV F E A A+ +L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESL 262
Query: 152 NG-----HYIFPGE-------QASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEE 199
G +F G+ + +K +F+D P LYV LS+ ++ + E
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 200 VFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259
+F YG I ++ E +S+G FV FS+ E + A LNG F + G +P+VVR+A
Sbjct: 323 IFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNG-FLVDG--KPIVVRVA 379
Query: 260 DPKKPRTGELRGNYAFGTP---SFGPNFLEPVRPPPNLGNSAGGQILPNVSYRPQHIFNN 316
+ K+ R L+ Y P + P+ P +P + +S+ G P + N
Sbjct: 380 ERKEDRIKRLQ-QYFQAQPRQYTQAPSAPSPAQPVLSYVSSSYGCFQPFQVGTSYYYMGN 438
Query: 317 SHPQVFSNWGNQEAAT 332
PQ+ G+Q T
Sbjct: 439 QVPQMS---GHQNITT 451
Score = 146 (56.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 47/154 (30%), Positives = 71/154 (46%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
LYV + TE+D+ F + V+ V L ++ TG+ Y ++ F A NA+ L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 152 NGHYIFPGEQASIKVRFAD-GEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
N H G+ I D R LYV L + +E +F P+G I
Sbjct: 83 N-HSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 211 FIVRDELKQSRGCAFVQFSHREMALAAISGLNGT 244
+V +E QS+G FVQF + A++A S L+G+
Sbjct: 142 KVV-EENGQSKGFGFVQFDTEQSAVSARSALHGS 174
Score = 146 (56.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 42/156 (26%), Positives = 76/156 (48%)
Query: 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIR 149
A LYV + + T + +F G+++ + ++ GQ +G+ FV+F + A +A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARS 169
Query: 150 ALNGHYIFPGEQASIKVRFADGEREHPVAPPDK--LYVGCLSKQTSKKEIEEVFSPYGHI 207
AL+G ++ G++ + ER D +YV L + + + +FS YG +
Sbjct: 170 ALHGSMVY-GKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Query: 208 EDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
+ ++RD + +SRG FV F + E A A+ L G
Sbjct: 229 SSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCG 264
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 192 (72.6 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 54/197 (27%), Positives = 99/197 (50%)
Query: 72 KRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P P+ + P+ +++V +PR E+++ PLFE+ G + ++ L D TG
Sbjct: 140 QRKYGGPPPESVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTG 199
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
+GY FV F E A A++ N H I G+ + + A+ ++L+VG +
Sbjct: 200 LNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN----------NRLFVGSI 249
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K++I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 250 PKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 309
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 310 VKVWGN--VVTVEWADP 324
Score = 145 (56.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 60/224 (26%), Positives = 108/224 (48%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 243 RLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 300
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 301 ARRRLMSGKVKVWGNV--VTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 358
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV-VRIADP 261
+G +E + K+ + AF+ F R+ A+ A+ +NG + G + +V + D
Sbjct: 359 QFGKLERV-------KKLKDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFAKPPDQ 410
Query: 262 K-KPRTGELRG--NYAFGTPSF-GPNFLEPVRPPPNLGNSAGGQ 301
K K R + + N + + GP P PPP G GG+
Sbjct: 411 KRKERKAQRQAAKNQMYDDYYYYGP----PHMPPPTRGRGRGGR 450
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 191 (72.3 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 55/197 (27%), Positives = 98/197 (49%)
Query: 72 KRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + P+ +++V +PR E+++ PLFE+ G + ++ L D TG
Sbjct: 141 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTG 200
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
+GY FV F E A A++ N H I G+ + + A+ ++L+VG +
Sbjct: 201 LNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN----------NRLFVGSI 250
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K++I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 251 PKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 310
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ V ADP
Sbjct: 311 VKVWGNVG--TVEWADP 325
Score = 145 (56.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 59/224 (26%), Positives = 109/224 (48%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 301
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G +++ +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 302 ARRRLMSGKVKVWGNVGTVE--WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 359
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV-VRIADP 261
+G +E + K+ + AF+ F R+ A+ A+ +NG + G + +V + D
Sbjct: 360 QFGKLERV-------KKLKDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFAKPPDQ 411
Query: 262 K-KPRTGELRG--NYAFGTPSF-GPNFLEPVRPPPNLGNSAGGQ 301
K K R + + N + + GP P PPP G GG+
Sbjct: 412 KRKERKAQRQAAKNQMYDDYYYYGP----PHMPPPTRGRGRGGR 451
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 191 (72.3 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 55/197 (27%), Positives = 98/197 (49%)
Query: 72 KRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + P+ +++V +PR E+++ PLFE+ G + ++ L D TG
Sbjct: 141 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTG 200
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
+GY FV F E A A++ N H I G+ + + A+ ++L+VG +
Sbjct: 201 LNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN----------NRLFVGSI 250
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K++I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 251 PKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 310
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ V ADP
Sbjct: 311 VKVWGNVG--TVEWADP 325
Score = 123 (48.4 bits), Expect = 0.00032, P = 0.00032
Identities = 54/222 (24%), Positives = 104/222 (46%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 301
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G +++ +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 302 ARRRLMSGKVKVWGNVGTVE--WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 359
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAIS-GLNGTFTMRGSDQPLVVRIADP 261
+G +E + K+ + AF+ F R+ A+ I L + ++ + + L+ +
Sbjct: 360 QFGKLERV-------KKLKDYAFIHFDERDGAVKVIILQLENSKNLKDTQRELIAYLTPL 412
Query: 262 KKPRTGELR--GNYAFGTPSFGPNFLEPVRPPPNLGNSAGGQ 301
+ +L N +GP P PPP G GG+
Sbjct: 413 RFDLNFKLSLFFNRYDDYYYYGP----PHMPPPTRGRGRGGR 450
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 191 (72.3 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 55/197 (27%), Positives = 98/197 (49%)
Query: 72 KRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + P+ +++V +PR E+++ PLFE+ G + ++ L D TG
Sbjct: 141 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTG 200
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
+GY FV F E A A++ N H I G+ + + A+ ++L+VG +
Sbjct: 201 LNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN----------NRLFVGSI 250
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K++I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 251 PKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 310
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ V ADP
Sbjct: 311 VKVWGNVG--TVEWADP 325
Score = 145 (56.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 59/224 (26%), Positives = 109/224 (48%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 301
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G +++ +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 302 ARRRLMSGKVKVWGNVGTVE--WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 359
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV-VRIADP 261
+G +E + K+ + AF+ F R+ A+ A+ +NG + G + +V + D
Sbjct: 360 QFGKLERV-------KKLKDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFAKPPDQ 411
Query: 262 K-KPRTGELRG--NYAFGTPSF-GPNFLEPVRPPPNLGNSAGGQ 301
K K R + + N + + GP P PPP G GG+
Sbjct: 412 KRKERKAQRQAAKNQMYDDYYYYGP----PHMPPPTRGRGRGGR 451
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 191 (72.3 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 55/197 (27%), Positives = 98/197 (49%)
Query: 72 KRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + P+ +++V +PR E+++ PLFE+ G + ++ L D TG
Sbjct: 141 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTG 200
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
+GY FV F E A A++ N H I G+ + + A+ ++L+VG +
Sbjct: 201 LNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN----------NRLFVGSI 250
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K++I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 251 PKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 310
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ V ADP
Sbjct: 311 VKVWGNVG--TVEWADP 325
Score = 143 (55.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 59/224 (26%), Positives = 109/224 (48%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 301
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G +++ +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 302 ARRRLMSGKVKVWGNVGTVE--WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFS 359
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV-VRIADP 261
+G +E + K+ + AF+ F R+ A+ A+ +NG + G + +V + D
Sbjct: 360 QFGKLERV-------KKLKDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFAKPPDQ 411
Query: 262 K-KPRTGELRG--NYAFGTPSF-GPNFLEPVRPPPNLGNSAGGQ 301
K K R + + N + + GP P PPP G GG+
Sbjct: 412 KRKERKAQRQAAKNQMYDDYYYYGP----PHMPPPTRGRGRGGR 451
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 191 (72.3 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 55/197 (27%), Positives = 98/197 (49%)
Query: 72 KRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + P+ +++V +PR E+++ PLFE+ G + ++ L D TG
Sbjct: 145 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTG 204
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
+GY FV F E A A++ N H I G+ + + A+ ++L+VG +
Sbjct: 205 LNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN----------NRLFVGSI 254
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K++I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 255 PKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 314
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ V ADP
Sbjct: 315 VKVWGNVG--TVEWADP 329
Score = 145 (56.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 59/224 (26%), Positives = 109/224 (48%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 248 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 305
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G +++ +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 306 ARRRLMSGKVKVWGNVGTVE--WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 363
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV-VRIADP 261
+G +E + K+ + AF+ F R+ A+ A+ +NG + G + +V + D
Sbjct: 364 QFGKLERV-------KKLKDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFAKPPDQ 415
Query: 262 K-KPRTGELRG--NYAFGTPSF-GPNFLEPVRPPPNLGNSAGGQ 301
K K R + + N + + GP P PPP G GG+
Sbjct: 416 KRKERKAQRQAAKNQMYDDYYYYGP----PHMPPPTRGRGRGGR 455
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 191 (72.3 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 55/197 (27%), Positives = 98/197 (49%)
Query: 72 KRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + P+ +++V +PR E+++ PLFE+ G + ++ L D TG
Sbjct: 156 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTG 215
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
+GY FV F E A A++ N H I G+ + + A+ ++L+VG +
Sbjct: 216 LNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN----------NRLFVGSI 265
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K++I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 266 PKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 325
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ V ADP
Sbjct: 326 VKVWGNVG--TVEWADP 340
Score = 145 (56.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 59/224 (26%), Positives = 109/224 (48%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 259 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 316
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G +++ +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 317 ARRRLMSGKVKVWGNVGTVE--WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 374
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV-VRIADP 261
+G +E + K+ + AF+ F R+ A+ A+ +NG + G + +V + D
Sbjct: 375 QFGKLERV-------KKLKDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFAKPPDQ 426
Query: 262 K-KPRTGELRG--NYAFGTPSF-GPNFLEPVRPPPNLGNSAGGQ 301
K K R + + N + + GP P PPP G GG+
Sbjct: 427 KRKERKAQRQAAKNQMYDDYYYYGP----PHMPPPTRGRGRGGR 466
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 183 (69.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241
KL+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A AAI+ L
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61
Query: 242 NGTFTMRGSDQPLVVRIADPKKPRT 266
+G+ TM G+ LVV+ AD K RT
Sbjct: 62 HGSQTMPGASSSLVVKFADTDKERT 86
Score = 148 (57.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V + + +E+D+R LFE GN+ E + + G +G FVK++ EA AI A
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINA 60
Query: 151 LNGHYIFPGEQASIKVRFADGERE 174
L+G PG +S+ V+FAD ++E
Sbjct: 61 LHGSQTMPGASSSLVVKFADTDKE 84
Score = 71 (30.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 172 EREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI--EDIFIVRDELKQSRGCAFVQFS 229
+RE P L + L ++ E+ ++F P+G++ +F+ R QS+ FV F
Sbjct: 263 QREGPEGC--NLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDR-ATNQSKCFGFVSFD 319
Query: 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+ A AI +NG F + G + L V++ PK
Sbjct: 320 NPASAQTAIQAMNG-FQI-GMKR-LKVQLKRPK 349
Score = 43 (20.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 152 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 184
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 187 (70.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 52/173 (30%), Positives = 87/173 (50%)
Query: 82 HI-NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTI 140
H+ N S P LYV + T TE+ I LF + G+V + + D G Y FV+F+
Sbjct: 37 HLGNGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSD 93
Query: 141 FEEAGNAIRALNGHYIFPGEQASIKVRFA--DGEREHPVAPPDK--LYVGCLSKQTSKKE 196
+A A++ +N + E +KV +A G+++ + ++VG LS + ++
Sbjct: 94 HGQASQALQTMNKRLLLDRE---MKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQK 150
Query: 197 IEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMR 248
+ E F P+G + D ++RD +S+G FV + RE A AI +NG + R
Sbjct: 151 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGR 203
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 61/231 (26%), Positives = 106/231 (45%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
++V + + +R F+ G+V + + +D T + +GY FV + EEA AI +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 152 NGHYIFPGEQASIKVRFAD---GEREHPVAPPDK---------------LYVGCLSKQTS 193
NG ++ G + +I+ +A G++E P +K +YVG ++ T
Sbjct: 197 NGQWL--GRR-TIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLT- 252
Query: 194 KKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253
+ EI + F+ +G I ++ I + +G AFV+F +++ A AI +N + G
Sbjct: 253 EDEIRQGFASFGRITEVRIFK-----MQGYAFVKFDNKDAAAKAIVQMNNQ-DVGGQ--- 303
Query: 254 LVVRIADPKKPRTGELRGN---YAFGTPSFGPNFLEPVRPPPNLGNSAGGQ 301
+VR + K TG+ G Y +G S G N +P G GGQ
Sbjct: 304 -LVRCSWGKTGDTGKTPGGSYGYGYGNSSSGGNS-QPYSGYGGGGAYGGGQ 352
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 193 (73.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 54/197 (27%), Positives = 100/197 (50%)
Query: 72 KRGFNHPAPDHINDS---GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + GI +++V +PR E+++ PLFE+ G + ++ L D +G
Sbjct: 144 QRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSG 203
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
Q +GY F+ F E A A++ + + I PG+ + + A+ ++L+VG +
Sbjct: 204 QNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVAN----------NRLFVGSI 253
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K+ I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 254 PKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 313
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 314 VKVWGN--VVTVEWADP 328
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 58/221 (26%), Positives = 105/221 (47%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P+ T+E+I F + +++V+L P DK+ + +G+CF+++ + A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWGNV--VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 362
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G +E + K+ + AFV F R A+ A+ +NG + G + +V+ P
Sbjct: 363 EFGKLERV-------KKLKDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLA-KPPD 413
Query: 263 KPRTGELRGNYAFGTPSFGPNFLEPV--RPPPNLGNSAGGQ 301
K R A + ++ + P PPP G GG+
Sbjct: 414 KKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGR 454
Score = 42 (19.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 27/105 (25%), Positives = 39/105 (37%)
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSF------GPNFLEPVRP 290
A+ G G RG+ P R A P + R G + G P GP + R
Sbjct: 497 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 556
Query: 291 PP----NLGNSAGGQILPNVSYRPQHIFNNSHPQVFSNWGNQEAA 331
N G + GG+ + +P ++ Q NWG+Q A
Sbjct: 557 SRGARGNRGGNVGGKRKADGYNQPDSKRRQTNNQ--QNWGSQPIA 599
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 193 (73.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 54/197 (27%), Positives = 100/197 (50%)
Query: 72 KRGFNHPAPDHINDS---GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + GI +++V +PR E+++ PLFE+ G + ++ L D +G
Sbjct: 144 QRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSG 203
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
Q +GY F+ F E A A++ + + I PG+ + + A+ ++L+VG +
Sbjct: 204 QNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVAN----------NRLFVGSI 253
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K+ I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 254 PKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 313
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 314 VKVWGN--VVTVEWADP 328
Score = 152 (58.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 58/220 (26%), Positives = 104/220 (47%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P+ T+E+I F + +++V+L P DK+ + +G+CF+++ + A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWGNV--VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 362
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G +E + K+ + AFV F R A+ A+ +NG + G + +V+ P
Sbjct: 363 EFGKLERV-------KKLKDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLA-KPPD 413
Query: 263 KPRTGELRGNYAFGTPSFGPNFLEPV--RPPPNLGNSAGG 300
K R A + ++ + P PPP G GG
Sbjct: 414 KKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGG 453
Score = 42 (19.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 27/105 (25%), Positives = 39/105 (37%)
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSF------GPNFLEPVRP 290
A+ G G RG+ P R A P + R G + G P GP + R
Sbjct: 498 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 557
Query: 291 PP----NLGNSAGGQILPNVSYRPQHIFNNSHPQVFSNWGNQEAA 331
N G + GG+ + +P ++ Q NWG+Q A
Sbjct: 558 SRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQ--QNWGSQPIA 600
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 193 (73.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 54/197 (27%), Positives = 100/197 (50%)
Query: 72 KRGFNHPAPDHINDS---GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + GI +++V +PR E+++ PLFE+ G + ++ L D +G
Sbjct: 144 QRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSG 203
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
Q +GY F+ F E A A++ + + I PG+ + + A+ ++L+VG +
Sbjct: 204 QNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVAN----------NRLFVGSI 253
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K+ I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 254 PKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 313
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 314 VKVWGN--VVTVEWADP 328
Score = 152 (58.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 58/220 (26%), Positives = 104/220 (47%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P+ T+E+I F + +++V+L P DK+ + +G+CF+++ + A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWGNV--VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 362
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G +E + K+ + AFV F R A+ A+ +NG + G + +V+ P
Sbjct: 363 EFGKLERV-------KKLKDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLA-KPPD 413
Query: 263 KPRTGELRGNYAFGTPSFGPNFLEPV--RPPPNLGNSAGG 300
K R A + ++ + P PPP G GG
Sbjct: 414 KKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGG 453
Score = 42 (19.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 27/105 (25%), Positives = 39/105 (37%)
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSF------GPNFLEPVRP 290
A+ G G RG+ P R A P + R G + G P GP + R
Sbjct: 498 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 557
Query: 291 PP----NLGNSAGGQILPNVSYRPQHIFNNSHPQVFSNWGNQEAA 331
N G + GG+ + +P ++ Q NWG+Q A
Sbjct: 558 SRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQ--QNWGSQPIA 600
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 193 (73.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 54/197 (27%), Positives = 100/197 (50%)
Query: 72 KRGFNHPAPDHINDS---GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + GI +++V +PR E+++ PLFE+ G + ++ L D +G
Sbjct: 144 QRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSG 203
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
Q +GY F+ F E A A++ + + I PG+ + + A+ ++L+VG +
Sbjct: 204 QNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVAN----------NRLFVGSI 253
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K+ I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 254 PKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 313
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 314 VKVWGN--VVTVEWADP 328
Score = 152 (58.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 58/220 (26%), Positives = 104/220 (47%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P+ T+E+I F + +++V+L P DK+ + +G+CF+++ + A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWGNV--VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 362
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G +E + K+ + AFV F R A+ A+ +NG + G + +V+ P
Sbjct: 363 EFGKLERV-------KKLKDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLA-KPPD 413
Query: 263 KPRTGELRGNYAFGTPSFGPNFLEPV--RPPPNLGNSAGG 300
K R A + ++ + P PPP G GG
Sbjct: 414 KKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGG 453
Score = 42 (19.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 27/105 (25%), Positives = 39/105 (37%)
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSF------GPNFLEPVRP 290
A+ G G RG+ P R A P + R G + G P GP + R
Sbjct: 498 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 557
Query: 291 PP----NLGNSAGGQILPNVSYRPQHIFNNSHPQVFSNWGNQEAA 331
N G + GG+ + +P ++ Q NWG+Q A
Sbjct: 558 SRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQ--QNWGSQPIA 600
>UNIPROTKB|F1SAI1 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
Uniprot:F1SAI1
Length = 371
Score = 183 (69.5 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241
KL+VG L+KQ S+ ++ +F +G+IE+ I+R S+GCAFV++S A AAI+ L
Sbjct: 20 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 79
Query: 242 NGTFTMRGSDQPLVVRIADPKKPRT 266
+G+ TM G+ LVV+ AD K RT
Sbjct: 80 HGSQTMPGASSSLVVKFADTDKERT 104
Score = 148 (57.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL+V + + +E+D+R LFE GN+ E + + G +G FVK++ EA AI A
Sbjct: 20 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINA 78
Query: 151 LNGHYIFPGEQASIKVRFADGERE 174
L+G PG +S+ V+FAD ++E
Sbjct: 79 LHGSQTMPGASSSLVVKFADTDKE 102
Score = 71 (30.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 172 EREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH-IEDIFIVRDELKQSRGCAFVQFSH 230
+RE P L++ L ++ E+ ++F P+G+ I V D QS+ FV F +
Sbjct: 280 QREGPEGC--NLFICHLPQEFGDAELMQMFLPFGNGISSKAFV-DRTNQSKCFGFVSFDN 336
Query: 231 REMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
A AI +NG F + G + L V++ PK
Sbjct: 337 PASAQTAIQAMNG-FQI-GMKR-LKVQLKRPK 365
Score = 43 (20.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 393 NSHVIVSESESPRSGNNPQTSASASTIPTVPQSP 426
N + + + +P SG + +A +P++P SP
Sbjct: 170 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIP-SP 202
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 186 (70.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241
KL+VG LSKQ ++ ++ ++F P+G IE+ I+R S+GCAFV+F ++ A +AI+ L
Sbjct: 56 KLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNL 115
Query: 242 NGTFTMRGSDQPLVVRIADPKKPR 265
+G+ TM G+ LVV+ AD +K R
Sbjct: 116 HGSQTMPGASSSLVVKYADTEKER 139
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 38/128 (29%), Positives = 64/128 (50%)
Query: 78 PAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVK 137
PA + + KL+V + + TE+D+R +F G + E + + G +G FVK
Sbjct: 43 PAENESRSEHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGP-DGASKGCAFVK 101
Query: 138 FTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEI 197
F +EA +AI L+G PG +S+ V++AD E+E + ++ G ++ +
Sbjct: 102 FGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRMQQM-AGHMN--LLNPFV 158
Query: 198 EEVFSPYG 205
FSPYG
Sbjct: 159 FNQFSPYG 166
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 176 (67.0 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 53/168 (31%), Positives = 79/168 (47%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
++Y+ +PRT T E + L EEHG V +V + DK +G+ + + F E+A +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 151 LNGHYIFPGEQASIKVRFAD-------------GEREHPVAPPDKLYVGCLSKQTSKKEI 197
LNG+ + E IKV + E V P K+YVG L+K +K+ +
Sbjct: 137 LNGNTV---EGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEML 193
Query: 198 EEVFSPYGHIEDIFIVR-DELKQSRGCAFVQFSHREMALAAISGLNGT 244
E +FS G + + R +S G FV FS E AAI LN +
Sbjct: 194 ENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 184 (69.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 71/246 (28%), Positives = 114/246 (46%)
Query: 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148
P K ++ +P+ T + I FE++G V VV+ +D T + +G+ FV T+ N
Sbjct: 113 PFKFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFV--TMASHI-NKE 169
Query: 149 RALNGHYIFPGEQASIKVRFADGEREHPVAPPD---KLYVGCLSKQTSKKEIEEVFSPYG 205
R L + G++ ++ E+ P D K++VG L+ +K +E FS +G
Sbjct: 170 RILRDTHELNGKRVDVR-------EENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFG 222
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I+ + IV D +SR FV FS+ E ++A + L + D+ + VR A+PKKP+
Sbjct: 223 EIDVVQIVLDSSGRSRCFGFVVFSN-ENSVAKV--LKHK-RHKIYDKMVEVRKAEPKKPK 278
Query: 266 TGELRGNYAFGTPSFGPN--FLEPVRPPPNLGNSAG-GQILPNVSYRPQHIFNNSH---P 319
R N F P+ F+ P PP N A + N P +FN P
Sbjct: 279 MSIKRSNNK-NFSKFPPHIPFMAPF-PPCNKETMAQWANFMYNTCGVP-FLFNQRFQNLP 335
Query: 320 QVFSNW 325
+SN+
Sbjct: 336 DFYSNY 341
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 184 (69.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 71/246 (28%), Positives = 114/246 (46%)
Query: 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148
P K ++ +P+ T + I FE++G V VV+ +D T + +G+ FV T+ N
Sbjct: 113 PFKFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFV--TMASHI-NKE 169
Query: 149 RALNGHYIFPGEQASIKVRFADGEREHPVAPPD---KLYVGCLSKQTSKKEIEEVFSPYG 205
R L + G++ ++ E+ P D K++VG L+ +K +E FS +G
Sbjct: 170 RILRDTHELNGKRVDVR-------EENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFG 222
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I+ + IV D +SR FV FS+ E ++A + L + D+ + VR A+PKKP+
Sbjct: 223 EIDVVQIVLDSSGRSRCFGFVVFSN-ENSVAKV--LKHK-RHKIYDKMVEVRKAEPKKPK 278
Query: 266 TGELRGNYAFGTPSFGPN--FLEPVRPPPNLGNSAG-GQILPNVSYRPQHIFNNSH---P 319
R N F P+ F+ P PP N A + N P +FN P
Sbjct: 279 MSIKRSNNK-NFSKFPPHIPFMAPF-PPCNKETMAQWANFMYNTCGVP-FLFNQRFQNLP 335
Query: 320 QVFSNW 325
+SN+
Sbjct: 336 DFYSNY 341
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 188 (71.2 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 52/197 (26%), Positives = 100/197 (50%)
Query: 72 KRGFNHPAPDHINDS---GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P PD + GI +++V +PR E+++ PLFE+ G + ++ L D +G
Sbjct: 172 QRKYGGPPPDTVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSG 231
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
Q +GY F+ F + A A++ + + I PG+ + + A+ ++L+VG +
Sbjct: 232 QNRGYAFITFCSKDAAQEAVKLCDNYEIRPGKHLGVCISVAN----------NRLFVGSI 281
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K+ I E F+ + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 282 PKNKTKENILEEFNKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 341
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 342 VKVWGN--VVTVEWADP 356
Score = 153 (58.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 58/220 (26%), Positives = 106/220 (48%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P+ T+E+I F + +++V+L P DK+ + +G+CF+++ + A
Sbjct: 275 RLFVGSIPKNKTKENILEEFNKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 332
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 333 ARRRLMSGKVKVWGNV--VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 390
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G +E + K+ + AFV F R A+ A++ +NG + G + +V+ K
Sbjct: 391 EFGKLERV-------KKLKDYAFVHFEDRGAAVKAMNEMNGK-EIEGEEIEIVLAKPPDK 442
Query: 263 KPRTGELRGNYAFGTPSFGPNFLEPVR-PPPNLGNSAGGQ 301
K + + + T + P R PPP G GG+
Sbjct: 443 KRKERQAARQASRSTAYEDYYYYPPPRMPPPIRGRGRGGR 482
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 188 (71.2 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 67/229 (29%), Positives = 114/229 (49%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TEE +R FE +G V+ + KD ++GQ +G+ FV+F ++ +R L
Sbjct: 109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQ---MRVL 165
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
++ G +KV + G H V P K++VG ++ + ++ E FS +G + D+F
Sbjct: 166 TNRHLIDGRWCEVKVPNSKG-MGHQV--PCKVFVGRCTEDINSDDLREYFSKFGEVTDVF 222
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK--KPRTGEL 269
I R R +FV F ++A ++ G + ++G + V A PK + R ++
Sbjct: 223 IPRP----FRAFSFVTFLDPDVA-QSLCGED--HIIKGVS--VHVSNAAPKAEQNRNQQV 273
Query: 270 RG-NY----AFGTPSFGP--NFLEPVRPPPNLGNSA----GGQ--ILPN 305
+ NY +FG S+ P N + P R + GN+ GG+ I+PN
Sbjct: 274 QSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPN 322
Score = 41 (19.5 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 405 RSG-NNPQTSASASTIPTVPQSPQVAASPECDWSEHTCPDGN 445
R G NNP + +A+ I T PQ + WS + N
Sbjct: 485 RKGPNNPNNNPAANGIKTDNSEPQ---NGNTGWSNQSSGSQN 523
Score = 39 (18.8 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 401 SESPRSGNNPQTSASASTIPTVPQSPQVAASPECDWS 437
S S G N ++ S + ++P +P + A+ WS
Sbjct: 413 SSSSNQGQN-MSNQSMLNLNSLPINPALVAAALNQWS 448
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 186 (70.5 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 62/222 (27%), Positives = 104/222 (46%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
+YV + + ++E++ +F E G V+ +D G+ +G+ FV F ++A A+ AL
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 152 NGHYI-----FPGE-------QASIKVRFADGEREHP-VAPPDKLYVGCLSKQTSKKEIE 198
NG F G+ + +K +F +E + LYV L + + ++
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 199 EVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258
E F+P+G I ++RD SRG FV FS E A AI+ +NG + +PL V +
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVT---KPLYVAL 401
Query: 259 ADPKKPRTGELRGNYAFGTPSFGPNFLEP---VRPP--PNLG 295
A K+ R L+ ++ P P + P + PP P +G
Sbjct: 402 AQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMG 443
Score = 156 (60.0 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 43/152 (28%), Positives = 72/152 (47%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
LYV + T T+ + F + G V+ V + +D T + GY +V + ++A A+ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
N ++ +A I+V ++ + + +++ L K K + E FS +G I
Sbjct: 107 N--FMALNGRA-IRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
+ D QS+G FVQ+ E A AI LNG
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195
Score = 46 (21.3 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 360 PRQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSASASTI 419
P+Q S + QQ + + Q + + + V S G + + S ++ +
Sbjct: 513 PQQPSPMMQQQMHPRGRMYRYPQRDVNTMPGPTQNMLSVPYDVSSGGGVHHRDSPTSQPV 572
Query: 420 PTVPQSPQVA-ASPE 433
P V + ++A A+PE
Sbjct: 573 PIVALATRLANAAPE 587
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 178 (67.7 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 50/185 (27%), Positives = 94/185 (50%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE---TQVKVM 162
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + ++ P+ K++VG ++ ++ E+ E FS YG + D+F
Sbjct: 163 SQRHMIDGRWCDCKLPNSKQSQDEPLRSR-KVFVGRCTEDMTEDELREFFSQYGDVMDVF 221
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRG 271
I K R AFV F+ ++A ++ G + ++G + + A+PK +L
Sbjct: 222 IP----KPFRAFAFVTFADDQIA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 272
Query: 272 NYAFG 276
+ FG
Sbjct: 273 SGRFG 277
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 178 (67.7 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 50/185 (27%), Positives = 94/185 (50%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE---TQVKVM 162
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + ++ P+ K++VG ++ ++ E+ E FS YG + D+F
Sbjct: 163 SQRHMIDGRWCDCKLPNSKQSQDEPLRSR-KVFVGRCTEDMTEDELREFFSQYGDVMDVF 221
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRG 271
I K R AFV F+ ++A ++ G + ++G + + A+PK +L
Sbjct: 222 IP----KPFRAFAFVTFADDQIA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 272
Query: 272 NYAFG 276
+ FG
Sbjct: 273 SGRFG 277
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 186 (70.5 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 52/197 (26%), Positives = 98/197 (49%)
Query: 72 KRGFNHPAPDHINDSGIPA---KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
+R + P P+ + P +++V +PR E+++ P FE+ G + ++ L D +G
Sbjct: 205 QRKYGGPPPESVYTGAQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSG 264
Query: 129 QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCL 188
+GY F+ F E A A++ N H I PG+ + + A+ ++L+VG +
Sbjct: 265 LNRGYAFLTFCTKEAAQEAVKLCNNHEIRPGKHIGVCISVAN----------NRLFVGSI 314
Query: 189 SKQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGT 244
K +K++I E FS + D+ + D+ K++RG F+++ H+ A A ++G
Sbjct: 315 PKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 374
Query: 245 FTMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 375 VKVWGN--LVTVEWADP 389
Score = 143 (55.4 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 60/233 (25%), Positives = 108/233 (46%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P++ T+E I F + + +V+L P DK+ + +G+CF+++ + A
Sbjct: 308 RLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 365
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ F
Sbjct: 366 ARRRLMSGKVKVWGNL--VTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFG 423
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G++E + K+ + AFV F+ R+ A+ A++ +NG + G +V A P
Sbjct: 424 QFGNLERV-------KKLKDYAFVHFNDRDGAVKALTEMNGK-ELEGEHIEIV--FAKPP 473
Query: 263 KPRTGELRGN-YAFGTPSFGPNFL--EPVRPPPNLGNSAGGQILPNVSYRPQH 312
+ E + A T + + P PPP G G SY P +
Sbjct: 474 DQKRKERKAQRQAAKTQMYDDYYYYGPPQMPPPARGRGRGAS-RGGYSYPPDY 525
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 160 (61.4 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 45/148 (30%), Positives = 75/148 (50%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL++ + T+E +R FE+ G + + V+ +D T + +G+ FV + EE A+ A
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 151 ----LNGHYIFPGEQASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
++G + P SI+ D +R P A + K++VG + + T + + + F YG
Sbjct: 71 RPHKVDGRVVEPKRAVSIE----DSQR--PGAYLNMKIFVGAIKEDTEEHHLRDYFGQYG 124
Query: 206 HIEDIFIVRDELK-QSRGCAFVQFSHRE 232
E I IV D + RG AFV F R+
Sbjct: 125 KTEVIEIVTDRGSGKKRGFAFVTFDDRD 152
>UNIPROTKB|K7ES14 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 HGNC:HGNC:14058 Ensembl:ENST00000588350
Uniprot:K7ES14
Length = 295
Score = 176 (67.0 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 46/137 (33%), Positives = 76/137 (55%)
Query: 188 LSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247
L+KQ S++++ +F P+G I++ ++R S+GCAFV+FS A AAI L+G+ TM
Sbjct: 2 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 61
Query: 248 RGSDQPLVVRIADPKKPRT----GELRGNYAFGTPS----FGPN--FLEPV-RPPPNLGN 296
G+ LVV+ AD K RT ++ G TPS F P + + + + + +
Sbjct: 62 PGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLS 121
Query: 297 SAGGQILPNVSYRPQHI 313
++G + P V++ P HI
Sbjct: 122 TSGSYLSPGVAFSPCHI 138
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 36/103 (34%), Positives = 54/103 (52%)
Query: 102 TEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161
+EED+ LF+ G + E + + G +G FVKF+ EA AI AL+G PG
Sbjct: 7 SEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 65
Query: 162 ASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
+S+ V+FAD ++E + ++ VG L T + FSPY
Sbjct: 66 SSLVVKFADTDKERTLRRMQQM-VGQLGILTPSLTLP--FSPY 105
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 173 (66.0 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 58/231 (25%), Positives = 96/231 (41%)
Query: 37 PDNY--HSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYV 94
P Y ++++ HY + S P P P N+ + + + LY+
Sbjct: 8 PQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSP--STNSSSNNSSNNSSGEQLSKTNLYI 65
Query: 95 APVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154
+P T++D+ L + +G ++ DK T Q +GY FV F A A+ +L +
Sbjct: 66 RGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKAN 125
Query: 155 YIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVR 214
G QA + A + + P LY+ L ++E+E + P+GH+ I+R
Sbjct: 126 ----GVQAQM----AKQQEQDPT----NLYISNLPISMDEQELENMLKPFGHVISTRILR 173
Query: 215 DELKQSRGCAFVQFSHREMALAAISGLNGTF--TMRG---SDQPLVVRIAD 260
D SRG F + E I NG + T G +PL+ + AD
Sbjct: 174 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFAD 224
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 180 (68.4 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 58/215 (26%), Positives = 104/215 (48%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE---TQVKVM 162
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + ++ P+ K++VG ++ ++ E+ E FS YG + D+F
Sbjct: 163 SQRHMIDGRWCDCKLPNSKQSQDEPLRSR-KVFVGRCTEDMTEDELREFFSQYGDVMDVF 221
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRG 271
I K R AFV F+ ++A ++ G + ++G + + A+PK +L
Sbjct: 222 IP----KPFRAFAFVTFADDQIA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 272
Query: 272 NYAFG-TPS-FGPN--FLEPVRPPPNLGNSAGGQI 302
+ FG P FG F LGN+ G +
Sbjct: 273 SGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNM 307
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 159 (61.0 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 55/180 (30%), Positives = 88/180 (48%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ + G G+ P P G +++V +PR E+++ P+FE G + E+ L
Sbjct: 50 NGQ-RKYGGPPPGWEGPHPQR----G--CEVFVGKIPRDVYEDELVPVFEAVGRIYELRL 102
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
D G+ +GY FV + EA A+R LN + I PG + D R
Sbjct: 103 MMDF-DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCS-VDNCR-------- 152
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFI---VRDELKQSRGCAFVQF-SHREMALA 236
L++G + K ++EI EE+ + D+ + D++K +RG AFV++ SHR A+A
Sbjct: 153 -LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMK-NRGFAFVEYESHRAAAMA 210
>UNIPROTKB|E1BPT6 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:DAAA02053512 EMBL:DAAA02053513 EMBL:DAAA02053514
EMBL:DAAA02053515 EMBL:DAAA02053516 EMBL:DAAA02053517
EMBL:DAAA02053518 EMBL:DAAA02053519 EMBL:DAAA02053520
EMBL:DAAA02053521 EMBL:DAAA02053522 EMBL:DAAA02053523
IPI:IPI00711139 Ensembl:ENSBTAT00000061510 Uniprot:E1BPT6
Length = 437
Score = 181 (68.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 59/231 (25%), Positives = 96/231 (41%)
Query: 37 PDNY--HSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYV 94
P Y ++++ HY + S P P P NH + + + LY+
Sbjct: 8 PQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSP--STNSSSNHSSSNSSGEQLSKTNLYI 65
Query: 95 APVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154
+P T++D+ L + +G ++ DK T Q +GY FV F A A+ +L +
Sbjct: 66 RGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKAN 125
Query: 155 YIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVR 214
G QA + A + + P LY+ L ++E+E + P+GH+ I+R
Sbjct: 126 ----GVQAQM----AKQQEQDPT----NLYISNLPISMDEQELENMLKPFGHVISTRILR 173
Query: 215 DELKQSRGCAFVQFSHREMALAAISGLNGTF--TMRG---SDQPLVVRIAD 260
D SRG F + E I NG + T G +PL+ + AD
Sbjct: 174 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFAD 224
Score = 41 (19.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 408 NNPQTSASASTIPTVPQSPQVAASP 432
++P + A+ IP +P +AASP
Sbjct: 267 SSPYSIATNRMIPQTSITPFIAASP 291
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 168 (64.2 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 56/199 (28%), Positives = 89/199 (44%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
KL++ + T+E +R FE+ G + + V+ +D T + +G+ FV + EE A+ A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 151 ----LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH 206
+NG + P S + D +R K++VG + + T + + + F YG
Sbjct: 68 RPHKVNGRVVEPKRAVSRE----DSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGK 123
Query: 207 IEDIFIVRDELK-QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
E I IV D + RG AFV F R+ + + T+ G + VR A P R
Sbjct: 124 TEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIV--IQKYHTVNGHN--CEVRKA-PSNQR 178
Query: 266 TGELRGNYAFGTPS-FGPN 283
GN+ G FG N
Sbjct: 179 GRSGSGNFGGGRGGGFGGN 197
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 182 (69.1 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 59/201 (29%), Positives = 88/201 (43%)
Query: 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAG 145
SG+ L+V + ++ + + F G ++ + D GQ +GY FV+F + A
Sbjct: 131 SGV-GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAK 188
Query: 146 NAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD--KLYVGCLSKQTSKKEIEEVFSP 203
NAI LNG + +Q + ERE +YV LS+ T+ E++ F
Sbjct: 189 NAIEKLNGK-VLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQ 247
Query: 204 YGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263
YG I ++RD +SR FV F + E A A+ LNG + D+ V A K
Sbjct: 248 YGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGK---KFDDKEWYVGKAQKKS 304
Query: 264 PRTGELRGNYAFGTPSFGPNF 284
R EL Y G+ G F
Sbjct: 305 ERELELSRRYEQGSSDGGNKF 325
Score = 176 (67.0 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 60/224 (26%), Positives = 105/224 (46%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
+YV + T+++++ F ++G++ V+ +D G+ + + FV F E+A A+ AL
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 285
Query: 152 NGHYI-----FPGEQASIKVRFADGEREHPVAPPD--------KLYVGCLSKQTSKKEIE 198
NG + G+ R + R + D LYV L + +++
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 199 EVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258
E+F+ +G I ++RD S+G FV FS A ++ +NG M G +PL V +
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK--MVGG-KPLYVAL 402
Query: 259 ADPKKPRTGELRGNYAFGTPSFGPNFLEPVRPPPNLGNSAG-GQ 301
A K+ R +L+ ++ P+F P + P R P G + G GQ
Sbjct: 403 AQRKEERRAKLQAQFSQMRPAFIPG-VGP-RMPIFTGGAPGLGQ 444
Score = 165 (63.1 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 46/157 (29%), Positives = 72/157 (45%)
Query: 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGN 146
G LYV + T+ + F E V+ V + +D T GY +V ++ ++A
Sbjct: 43 GALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEK 102
Query: 147 AIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH 206
A++ LN Y+ G+ I++ ++ + + L+V L K K + E FS G
Sbjct: 103 AMQKLNYSYL-NGKM--IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT 159
Query: 207 IEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
I + D + QSRG FVQF + A AI LNG
Sbjct: 160 IVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNG 196
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 173 (66.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 51/191 (26%), Positives = 96/191 (50%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE---TQVKVM 162
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + + P+ K++VG ++ + +E+++ F YG + D+F
Sbjct: 163 SQRHMIDGRWCDCKLPNSKQSPDEPLRSR-KVFVGRCTEDMTAEELQQFFCQYGEVVDVF 221
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRG 271
I K R AFV F+ ++A ++ G + ++G + + A+PK +L
Sbjct: 222 IP----KPFRAFAFVTFADDKVA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 272
Query: 272 NYAFGTPS-FG 281
+ FG S FG
Sbjct: 273 SGRFGGKSPFG 283
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 63/243 (25%), Positives = 114/243 (46%)
Query: 16 NPN-SFSGNYCSWSSDD----HRH-NFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFI 69
NPN +F+ + S S+ HRH FPD+ + R Y +++ +P +
Sbjct: 24 NPNVAFTNHSLSLSTPSLCRLHRHATFPDSIPAKSRNLTSYFSTTTQ-------EP---V 73
Query: 70 GRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQ 129
+ AP+ + + +L VP T+T EDIR LFE++G+VI++ + K+ +
Sbjct: 74 LESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-R 132
Query: 130 QQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI-------KVRFADGEREHPVAPPDK 182
+G F++ EEA A+++L + G + + K +A E PV P
Sbjct: 133 NRGLVFIEMASPEEAATALKSLESCE-YEGRRLKVDYAKTKKKKTYAPRETPSPV-PTFN 190
Query: 183 LYVGCLSKQTSKKEIEEVF-SPYGHIEDIFIV-RDELKQSRGCAFVQFSHREMALAAISG 240
L+V L+ + K ++E F + G++ ++ + ++S G FV F ++ A AA+
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 241 LNG 243
G
Sbjct: 251 FQG 253
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 180 (68.4 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 54/196 (27%), Positives = 95/196 (48%)
Query: 71 RKRGFNHPAPDHIN-DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQ 129
RK G P H I +++V +PR E+++ PLFE+ G + ++ L D +G
Sbjct: 143 RKYGGPPPGSTHAGVQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGL 202
Query: 130 QQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLS 189
+GY FV F E A A++ N + I PG+ + + A+ ++L+VG +
Sbjct: 203 NRGYAFVTFCTKEAAQKAVKLCNNNEIRPGKHIGVCISVAN----------NRLFVGSIP 252
Query: 190 KQTSKKEIEEVFSPYGH-IEDIFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGTF 245
K +K +I E F+ + D+ + D+ K++RG F+ + H+ A A ++G
Sbjct: 253 KSKTKDQIVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKV 312
Query: 246 TMRGSDQPLVVRIADP 261
+ G+ + V ADP
Sbjct: 313 KVWGN--VVTVEWADP 326
Score = 122 (48.0 bits), Expect = 0.00035, P = 0.00035
Identities = 61/241 (25%), Positives = 109/241 (45%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIE----VVL---PKDKRTGQQQGYCFVKFTIFEE 143
+L+V +P++ T++ I EE V E V+L P DK+ + +G+CF+ + +
Sbjct: 245 RLFVGSIPKSKTKDQI---VEEFAKVTEGLNDVILYHQPDDKK--KNRGFCFLGYEDHKT 299
Query: 144 AGNAIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEE 199
A A R L +G G + V +AD E P +A L+V L+ +++ +E+
Sbjct: 300 AAQARRRLMSGKVKVWGNV--VTVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEK 357
Query: 200 VFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259
F +G +E + K+ + AF+ F R+ A+ A++ L+G + G +P+ + A
Sbjct: 358 TFCQFGKLERV-------KKLKDYAFIHFEERDGAVKALAELHGK-DLEG--EPIEIVFA 407
Query: 260 DPKKPRTGELRGN-YAFGTPSFGPNFL--EP-VRPPPNL-GNSAGGQILPNVSYRPQHIF 314
P + E + A T + + P V P G A G P+ Y + +
Sbjct: 408 KPPDQKRKERKAQRQAAKTQMYDEYYYYGPPHVHQPTRARGRGARGYSYPHDYYSYEDYY 467
Query: 315 N 315
N
Sbjct: 468 N 468
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 176 (67.0 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 50/165 (30%), Positives = 88/165 (53%)
Query: 70 GRKRGFNHPAP-DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG 128
G G + P D I + KL++ + T+E+++ FE+ GN+++VV+ KD RT
Sbjct: 10 GNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTK 69
Query: 129 QQQGYCFVKFT---IFEEAGNAI-RALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLY 184
+ +G+ F+ ++ + +EA + ++G + P ++A V D + + A KL+
Sbjct: 70 RSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEP-KRA---VPRQDIDSPNAGATVKKLF 125
Query: 185 VGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQF 228
VG L ++ I + F +G+I DI IV D E + RG AFV+F
Sbjct: 126 VGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEF 170
>MGI|MGI:2387629 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
CleanEx:MM_TARDBP Genevestigator:Q921F2
GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
Length = 414
Score = 177 (67.4 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 57/215 (26%), Positives = 104/215 (48%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE---TQVKVM 162
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + + P+ K++VG ++ + +E+++ F YG + D+F
Sbjct: 163 SQRHMIDGRWCDCKLPNSKQSPDEPLRSR-KVFVGRCTEDMTAEELQQFFCQYGEVVDVF 221
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRG 271
I K R AFV F+ ++A ++ G + ++G + + A+PK +L
Sbjct: 222 IP----KPFRAFAFVTFADDKVA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 272
Query: 272 NYAFG-TPS-FGPN--FLEPVRPPPNLGNSAGGQI 302
+ FG P FG F LGN+ GG +
Sbjct: 273 SGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGGNM 307
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 183 (69.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 63/206 (30%), Positives = 105/206 (50%)
Query: 62 NGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVL 121
NGQ F G G+ P P G +++V +PR E+++ PLFE G + E+ L
Sbjct: 40 NGQ-RKFGGPPPGWEGPPPPR----G--CEVFVGKIPRNIYEDELVPLFERAGKIYELRL 92
Query: 122 PKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181
+ +G+ +G+ FV +T E+A AI+ LN + I PG + + D R
Sbjct: 93 MMEF-SGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFIGVCISL-DNCR-------- 142
Query: 182 KLYVGCLSKQTSKKEI-EEVFSPYGHIEDIFIVRD--ELKQSRGCAFVQF-SHREMALAA 237
L++G + ++ K+EI +E+ + D+ + D + ++RG AFV++ SHR A+A
Sbjct: 143 -LFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMAR 201
Query: 238 ISGLNGTFTMRGSDQPLVVRIADPKK 263
L GTF + G + + V A P+K
Sbjct: 202 RRLLPGTFQLWG--RAVQVDWACPEK 225
Score = 37 (18.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 458 WDKPEEYLLFEQQIEKQQKLQNGSQSVSSTKEVAQTQEVQLQPHVFRKKVQLQD 511
W PE+ + E + + + L + +S+T++ + + + +P V + +L+D
Sbjct: 220 WACPEKEVDAET-MRRVKVLYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRD 272
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 179 (68.1 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 79/315 (25%), Positives = 137/315 (43%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + +++ + NG + F+GR + + + G AK +Y+
Sbjct: 73 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 128
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY--- 155
+E++R LF + G + V + +D +G+ +G+ FV + E+A A+ +NG
Sbjct: 129 EEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSG 187
Query: 156 --IFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 188 KSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 247
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 248 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 303
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 304 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 357
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 358 AQMRPNPRWQQGGRP 372
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 54/221 (24%), Positives = 97/221 (43%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 4 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 56
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F E A AI +NG +F G S K R A+ G
Sbjct: 57 CKVVCDEN-GSK-GYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 114
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ ++ + + E+FS +G + ++RD +S+G FV + E
Sbjct: 115 KAKEFT---NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHE 171
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG M G + V A K R EL+ +
Sbjct: 172 DANKAVEEMNGK-EMSGKS--IFVGRAQKKVERQAELKRKF 209
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 174 (66.3 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 45/183 (24%), Positives = 91/183 (49%)
Query: 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
D P K+++ + + T F ++G + + V+ +D+ TGQ +G+ F+ F +
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFA---DP 70
Query: 145 GNAIRALNGHYIFPGEQASIK---VRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVF 201
+ + ++ G+Q IK + A G + + K++VG + ++ E+++ F
Sbjct: 71 SVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTK-KIFVGGIPSTVTEDELKDFF 129
Query: 202 SPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
+ YG++ + ++RD E +SRG FV F E+ +S N M +D + ++ A+
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN-MIDM--ADTQVEIKKAE 186
Query: 261 PKK 263
PKK
Sbjct: 187 PKK 189
Score = 41 (19.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 271 GNYAFGTPSFGPNF 284
G Y +G S GP F
Sbjct: 244 GGYGYGRGSVGPEF 257
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 179 (68.1 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 79/315 (25%), Positives = 137/315 (43%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + +++ + NG + F+GR + + + G AK +Y+
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 199
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY--- 155
+E++R LF + G + V + +D +G+ +G+ FV + E+A A+ +NG
Sbjct: 200 EEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSG 258
Query: 156 --IFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 259 KSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 319 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 374
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 375 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 429 AQMRPNPRWQQGGRP 443
Score = 150 (57.9 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 57/204 (27%), Positives = 91/204 (44%)
Query: 86 SGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
S P A LYV + TE + F G V+ + + +D T + GY +V F +A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 145 GNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
A+ +N I G+ I++ ++ + + +++ L K K + + FS +
Sbjct: 66 ERALDTMNFDVI-KGKP--IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 205 GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
G+I +V DE S+G AFV F +E A AI +NG M +D+ + V +K
Sbjct: 123 GNILSCKVVCDE-NGSKGYAFVHFETQEAANKAIEKMNG---MLLNDRKVFVGRFKSRKE 178
Query: 265 RTGELRGNYAFGTPSFGPNFLEPV 288
R EL T + NF E V
Sbjct: 179 REAELGAKAKEFTNVYIKNFGEEV 202
Score = 145 (56.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 54/221 (24%), Positives = 97/221 (43%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 75 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F E A AI +NG +F G S K R A+ G
Sbjct: 128 CKVVCDEN-GSK-GYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ ++ + + E+FS +G + ++RD +S+G FV + E
Sbjct: 186 KAKEFT---NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHE 242
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG M G + V A K R EL+ +
Sbjct: 243 DANKAVEEMNGK-EMSGKS--IFVGRAQKKVERQAELKRKF 280
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 179 (68.1 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 79/315 (25%), Positives = 137/315 (43%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + +++ + NG + F+GR + + + G AK +Y+
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 199
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY--- 155
+E++R LF + G + V + +D +G+ +G+ FV + E+A A+ +NG
Sbjct: 200 EEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSG 258
Query: 156 --IFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 259 KSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 319 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 374
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 375 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 429 AQMRPNPRWQQGGRP 443
Score = 150 (57.9 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 57/204 (27%), Positives = 91/204 (44%)
Query: 86 SGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
S P A LYV + TE + F G V+ + + +D T + GY +V F +A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 145 GNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
A+ +N I G+ I++ ++ + + +++ L K K + + FS +
Sbjct: 66 ERALDTMNFDVI-KGKP--IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 205 GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
G+I +V DE S+G AFV F +E A AI +NG M +D+ + V +K
Sbjct: 123 GNILSCKVVCDE-NGSKGYAFVHFETQEAANKAIEKMNG---MLLNDRKVFVGRFKSRKE 178
Query: 265 RTGELRGNYAFGTPSFGPNFLEPV 288
R EL T + NF E V
Sbjct: 179 REAELGAKAKEFTNVYIKNFGEEV 202
Score = 145 (56.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 54/221 (24%), Positives = 97/221 (43%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 75 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F E A AI +NG +F G S K R A+ G
Sbjct: 128 CKVVCDEN-GSK-GYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ ++ + + E+FS +G + ++RD +S+G FV + E
Sbjct: 186 KAKEFT---NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHE 242
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG M G + V A K R EL+ +
Sbjct: 243 DANKAVEEMNGK-EMSGKS--IFVGRAQKKVERQAELKRKF 280
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 172 (65.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 61/242 (25%), Positives = 109/242 (45%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L++ + TE I+ ++ G ++V L +++ TG GYCFV+F EA +A+ ++
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SM 153
Query: 152 NGHYIFPGEQASIKVRFADGE--REHPVAPPDK--LYVGCLSKQTSKKEIEEVF-SPYGH 206
N I PG K+ +A G RE ++ + ++VG LS ++ ++ +F S Y
Sbjct: 154 NNKPI-PGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 207 IEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK-KP 264
+ I+ D + SRG FV+F+ +A++ + G D+P+ V +A PK K
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQIC---GDRPIRVGLATPKSKA 269
Query: 265 RTGELRGNYAFGTPSFGPNFLEPVRPPPNLGNSAGGQILPNVSYRPQHIFNNSHPQVFSN 324
P G F +P P ++A + V + + +F N
Sbjct: 270 HVFSPVNVVPVSMPPVG--FYSAAQPVPQFADTANSTVF--VGGLSKFVSEEELKYLFQN 325
Query: 325 WG 326
+G
Sbjct: 326 FG 327
Score = 48 (22.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 381 RQSSTQNVEQQQ-----NSHVIVS--ESESPRSGN--NPQTSASASTIPTVPQSPQVAAS 431
RQS+ + Q Q NS + +S +++P + N Q+ S +TIP P ++
Sbjct: 348 RQSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLP 407
Query: 432 PECDWSEH 439
P+ +S +
Sbjct: 408 PQAQFSPY 415
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 178 (67.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 70/248 (28%), Positives = 111/248 (44%)
Query: 103 EEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI-----RALNGHYIF 157
+E ++ LF ++G + V + D TG+ +G+ FV F E+A A+ + +NG +F
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVF 262
Query: 158 PGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYGHIED 209
G QA +K RF ++E LY+ L +++ + FSP+G I
Sbjct: 263 VGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 210 IFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGEL 269
++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R L
Sbjct: 323 AKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEERKAHL 378
Query: 270 RGNYAFGTPSFGPNFLEPVRPPPN-LGNSAGGQILPNVSY---RPQHIFNNSHPQVFSNW 325
Y G L P N +AGG +P V RP + N Q+ N
Sbjct: 379 TNQYMQRIA--GMRAL-PANTIINQFQPAAGGYFMPAVPQAQSRPTYYAPNQMAQMRPNP 435
Query: 326 GNQEAATP 333
Q+ P
Sbjct: 436 RWQQGGRP 443
Score = 141 (54.7 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 51/185 (27%), Positives = 85/185 (45%)
Query: 86 SGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
S P A LYV + TE + F G V+ + + +D T + GY +V F +A
Sbjct: 6 SSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 145 GNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
A+ +N I G+ I++ ++ + + +++ L K K + + FS +
Sbjct: 66 ERALDTMNFDVI-KGKP--IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 205 GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
G+I +V DE S+G AFV F ++ A AI +NG M +D+ + V +K
Sbjct: 123 GNILSCKVVCDE-NGSKGYAFVHFETQDAADRAIEKMNG---MLLNDRKVFVGRFKSRKE 178
Query: 265 RTGEL 269
R EL
Sbjct: 179 REAEL 183
Score = 137 (53.3 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 53/221 (23%), Positives = 96/221 (43%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 75 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F + A AI +NG +F G S K R A+ G
Sbjct: 128 CKVVCDEN-GSK-GYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ + ++E+FS YG + ++ D +S+G FV F E
Sbjct: 186 KAKEFT---NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHE 242
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG + G + + V A K R EL+ +
Sbjct: 243 DANKAVEEMNGK-DING--KMVFVGRAQKKVERQAELKRRF 280
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 178 (67.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 78/315 (24%), Positives = 136/315 (43%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + + + + NG + F+GR + + + G AK +Y+
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 199
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH---- 154
+E+++ LF + G + V + +D +G+ +G+ FV + E+A A+ +NG
Sbjct: 200 EEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 258
Query: 155 -YIFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 259 KVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 319 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 374
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 375 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 429 AQMRPNPRWQQGGRP 443
Score = 149 (57.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 57/204 (27%), Positives = 91/204 (44%)
Query: 86 SGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
S P A LYV + TE + F G V+ + + +D T + GY +V F +A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 145 GNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
A+ +N I G+ I++ ++ + + +++ L K K + + FS +
Sbjct: 66 ERALDTMNFDVI-KGKP--IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 205 GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
G+I +V DE S+G AFV F +E A AI +NG M +D+ + V +K
Sbjct: 123 GNILSCKVVCDE-NGSKGYAFVHFETQEAADKAIEKMNG---MLLNDRKVFVGRFKSRKE 178
Query: 265 RTGELRGNYAFGTPSFGPNFLEPV 288
R EL T + NF E V
Sbjct: 179 REAELGAKAKEFTNVYIKNFGEEV 202
Score = 144 (55.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 53/221 (23%), Positives = 98/221 (44%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 75 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F E A AI +NG +F G S K R A+ G
Sbjct: 128 CKVVCDEN-GSK-GYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ ++ + ++E+FS +G + ++RD +S+G FV + E
Sbjct: 186 KAKEFT---NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG S + + V A K R EL+ +
Sbjct: 243 DANKAVEEMNGKEI---SGKVIFVGRAQKKVERQAELKRKF 280
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 44/120 (36%), Positives = 64/120 (53%)
Query: 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISG 240
KL+VG LS T ++ +E VFS YG I+++ +V+D E K+SRG FV F + E A A++G
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 241 LNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSFGPNFLEPVRPPPNLGNSAGG 300
+NG T+ G +R+ D + + RG Y G+ G F R G GG
Sbjct: 67 MNGK-TVDGRQ----IRV-DQAGKSSNDRRGGYRGGSSGGGRGFFRGGR-----GRGGGG 115
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 178 (67.7 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 78/315 (24%), Positives = 136/315 (43%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + + + + NG + F+GR + + + G AK +Y+
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 199
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH---- 154
+E+++ LF + G + V + +D +G+ +G+ FV + E+A A+ +NG
Sbjct: 200 EEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITG 258
Query: 155 -YIFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 259 KVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 319 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 374
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 375 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 429 AQMRPNPRWQQGGRP 443
Score = 149 (57.5 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 57/204 (27%), Positives = 91/204 (44%)
Query: 86 SGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
S P A LYV + TE + F G V+ + + +D T + GY +V F +A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 145 GNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
A+ +N I G+ I++ ++ + + +++ L K K + + FS +
Sbjct: 66 ERALDTMNFDVI-KGKP--IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 205 GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
G+I +V DE S+G AFV F +E A AI +NG M +D+ + V +K
Sbjct: 123 GNILSCKVVCDE-NGSKGYAFVHFETQEAADKAIEKMNG---MLLNDRKVFVGRFKSRKE 178
Query: 265 RTGELRGNYAFGTPSFGPNFLEPV 288
R EL T + NF E V
Sbjct: 179 REAELGAKAKEFTNVYIKNFGEEV 202
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 53/221 (23%), Positives = 99/221 (44%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 75 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F E A AI +NG +F G S K R A+ G
Sbjct: 128 CKVVCDEN-GSK-GYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ ++ + ++E+FS +G + ++RD +S+G FV + E
Sbjct: 186 KAKEFT---NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG + G + + V A K R EL+ +
Sbjct: 243 DANKAVEEMNGK-EITG--KVIFVGRAQKKVERQAELKRKF 280
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 179 (68.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 56/193 (29%), Positives = 90/193 (46%)
Query: 82 HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIF 141
HI + A LY+A + EE + LF + GNV V +P+DK G GY FV++
Sbjct: 12 HIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE 71
Query: 142 EEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVF 201
E A LN +F G+ D +R V L++G L + +K + ++F
Sbjct: 72 YECEYAANILNMTKLF-GKALRCNKATQD-KRSFDVGA--NLFIGNLDDEVDEKMLFDIF 127
Query: 202 SPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADP 261
S +G I + ++R+E S+G F+ + + E + AI +N F ++ + + A
Sbjct: 128 SSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFIC---NKKVHISYAF- 183
Query: 262 KKPRTGELRGNYA 274
KK GE G A
Sbjct: 184 KKDSKGERHGTAA 196
Score = 40 (19.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 291 PPNLGNSAGGQILP-NVSYR-PQHIFNNSHPQVFSNW 325
PP + N G ILP N+S P +I N P N+
Sbjct: 309 PPKINNRIGN-ILPSNISSNLPPNIPPNLPPNFPPNF 344
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 179 (68.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 56/193 (29%), Positives = 90/193 (46%)
Query: 82 HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIF 141
HI + A LY+A + EE + LF + GNV V +P+DK G GY FV++
Sbjct: 12 HIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE 71
Query: 142 EEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVF 201
E A LN +F G+ D +R V L++G L + +K + ++F
Sbjct: 72 YECEYAANILNMTKLF-GKALRCNKATQD-KRSFDVGA--NLFIGNLDDEVDEKMLFDIF 127
Query: 202 SPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADP 261
S +G I + ++R+E S+G F+ + + E + AI +N F ++ + + A
Sbjct: 128 SSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFIC---NKKVHISYAF- 183
Query: 262 KKPRTGELRGNYA 274
KK GE G A
Sbjct: 184 KKDSKGERHGTAA 196
Score = 40 (19.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 291 PPNLGNSAGGQILP-NVSYR-PQHIFNNSHPQVFSNW 325
PP + N G ILP N+S P +I N P N+
Sbjct: 309 PPKINNRIGN-ILPSNISSNLPPNIPPNLPPNFPPNF 344
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 169 (64.5 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 56/215 (26%), Positives = 102/215 (47%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 39 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYE---TQVKVM 95
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + + P+ K++VG ++ + E+++ F YG + D+F
Sbjct: 96 SQRHMIDGRWCDCKLPNSKQSPDEPLRSR-KVFVGRCTEDMTADELQQFFCQYGEVVDVF 154
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRG 271
I K R AFV F+ ++A ++ G + ++G + + A+PK +L
Sbjct: 155 IP----KPFRAFAFVTFADDQVA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 205
Query: 272 NYAFG-TPS-FGPN--FLEPVRPPPNLGNSAGGQI 302
+ FG P FG F LGN+ G +
Sbjct: 206 SGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNM 240
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 177 (67.4 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 78/315 (24%), Positives = 135/315 (42%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + + + + NG + F+GR + + + G AK +Y+
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 199
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH---- 154
+E ++ LF + G + V + +D +G+ +G+ FV + E+A A+ +NG
Sbjct: 200 EEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 258
Query: 155 -YIFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 259 KVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 319 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 374
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 375 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 429 AQMRPNPRWQQGGRP 443
Score = 149 (57.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 57/204 (27%), Positives = 91/204 (44%)
Query: 86 SGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
S P A LYV + TE + F G V+ + + +D T + GY +V F +A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 145 GNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
A+ +N I G+ I++ ++ + + +++ L K K + + FS +
Sbjct: 66 ERALDTMNFDVI-KGKP--IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 205 GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
G+I +V DE S+G AFV F +E A AI +NG M +D+ + V +K
Sbjct: 123 GNILSCKVVCDE-NGSKGYAFVHFETQEAADKAIEKMNG---MLLNDRKVFVGRFKSRKE 178
Query: 265 RTGELRGNYAFGTPSFGPNFLEPV 288
R EL T + NF E V
Sbjct: 179 REAELGAKAKEFTNVYIKNFGEEV 202
Score = 144 (55.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 53/221 (23%), Positives = 98/221 (44%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 75 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F E A AI +NG +F G S K R A+ G
Sbjct: 128 CKVVCDEN-GSK-GYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ ++ + ++E+FS +G + ++RD +S+G FV + E
Sbjct: 186 KAKEFT---NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG S + + V A K R EL+ +
Sbjct: 243 DANKAVEEMNGKEI---SGKVIFVGRAQKKVERQAELKRKF 280
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 176 (67.0 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 78/315 (24%), Positives = 134/315 (42%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + + + + NG + F+GR + + + G AK +Y+
Sbjct: 46 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 101
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH---- 154
+E ++ LF + G + V + +D G+ +G+ FV + E+A A+ +NG
Sbjct: 102 EEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISG 160
Query: 155 -YIFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 161 KIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 220
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 221 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 276
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 277 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 330
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 331 AQMRPNPRWQQGGRP 345
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 46/188 (24%), Positives = 84/188 (44%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
+++ + ++ + + F GN++ + D+ G + GY FV F E A AI +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSK-GYAFVHFETQEAADKAIEKM 60
Query: 152 NG-----HYIFPGEQASIKVRFAD-GEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYG 205
NG +F G S K R A+ G + +Y+ ++ + ++E+FS +G
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT---NVYIKNFGEEVDDESLKELFSQFG 117
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
+ ++RD +S+G FV + E A A+ +NG S + + V A K R
Sbjct: 118 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI---SGKIIFVGRAQKKVER 174
Query: 266 TGELRGNY 273
EL+ +
Sbjct: 175 QAELKRKF 182
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 177 (67.4 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 78/315 (24%), Positives = 135/315 (42%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + + + + NG + F+GR + + + G AK +Y+
Sbjct: 184 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 239
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH---- 154
+E ++ LF + G + V + +D +G+ +G+ FV + E+A A+ +NG
Sbjct: 240 EEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 298
Query: 155 -YIFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 299 KVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 358
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 359 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 414
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 415 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 468
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 469 AQMRPNPRWQQGGRP 483
Score = 144 (55.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 53/221 (23%), Positives = 98/221 (44%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 115 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 167
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F E A AI +NG +F G S K R A+ G
Sbjct: 168 CKVVCDEN-GSK-GYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 225
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ ++ + ++E+FS +G + ++RD +S+G FV + E
Sbjct: 226 KAKEFT---NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 282
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG S + + V A K R EL+ +
Sbjct: 283 DANKAVEEMNGKEI---SGKVIFVGRAQKKVERQAELKRKF 320
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 176 (67.0 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 78/315 (24%), Positives = 134/315 (42%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + + + + NG + F+GR + + + G AK +Y+
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 199
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH---- 154
+E ++ LF + G + V + +D G+ +G+ FV + E+A A+ +NG
Sbjct: 200 EEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISG 258
Query: 155 -YIFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 259 KIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 319 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 374
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 375 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 429 AQMRPNPRWQQGGRP 443
Score = 149 (57.5 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 57/204 (27%), Positives = 91/204 (44%)
Query: 86 SGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
S P A LYV + TE + F G V+ + + +D T + GY +V F +A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 145 GNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
A+ +N I G+ I++ ++ + + +++ L K K + + FS +
Sbjct: 66 ERALDTMNFDVI-KGKP--IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 205 GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
G+I +V DE S+G AFV F +E A AI +NG M +D+ + V +K
Sbjct: 123 GNILSCKVVCDE-NGSKGYAFVHFETQEAADKAIEKMNG---MLLNDRKVFVGRFKSRKE 178
Query: 265 RTGELRGNYAFGTPSFGPNFLEPV 288
R EL T + NF E V
Sbjct: 179 REAELGAKAKEFTNVYIKNFGEEV 202
Score = 142 (55.0 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 53/221 (23%), Positives = 98/221 (44%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 75 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F E A AI +NG +F G S K R A+ G
Sbjct: 128 CKVVCDEN-GSK-GYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ ++ + ++E+FS +G + ++RD +S+G FV + E
Sbjct: 186 KAKEFT---NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 242
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG S + + V A K R EL+ +
Sbjct: 243 DANKAVEEMNGKEI---SGKIIFVGRAQKKVERQAELKRKF 280
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 173 (66.0 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 52/192 (27%), Positives = 96/192 (50%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYE---TQVKVM 162
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + + P+ K++VG ++ + E+++ F+ YG + D+F
Sbjct: 163 SQRHMIDGRWCDCKLPNSKQSPDEPLRSR-KVFVGRCTEDMTADELQQFFAQYGEVVDVF 221
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGEL-R 270
I K R AFV F+ ++A ++ G + ++G + + A+PK +L R
Sbjct: 222 IP----KPFRAFAFVTFADDQVA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 272
Query: 271 GNYAFGTPS-FG 281
G G P FG
Sbjct: 273 GGRFGGNPGGFG 284
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 173 (66.0 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 52/192 (27%), Positives = 96/192 (50%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYE---TQVKVM 162
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + + P+ K++VG ++ + E+++ F+ YG + D+F
Sbjct: 163 SQRHMIDGRWCDCKLPNSKQSPDEPLRSR-KVFVGRCTEDMTADELQQFFAQYGEVVDVF 221
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGEL-R 270
I K R AFV F+ ++A ++ G + ++G + + A+PK +L R
Sbjct: 222 IP----KPFRAFAFVTFADDQVA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 272
Query: 271 GNYAFGTPS-FG 281
G G P FG
Sbjct: 273 GGRFGGNPGGFG 284
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 171 (65.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 188 LSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247
L KQ ++++ +F P+GHIE+ ++R S+GCAFV+F + A AAI GL+G+ TM
Sbjct: 2 LGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTM 61
Query: 248 RGSDQPLVVRIADPKKPR 265
G+ LVV++AD + R
Sbjct: 62 AGASSSLVVKLADTDRER 79
Score = 114 (45.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 103 EEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162
EED+R LF+ G++ E + + G +G FVKF EA AIR L+G G +
Sbjct: 8 EEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASS 66
Query: 163 SIKVRFADGERE 174
S+ V+ AD +RE
Sbjct: 67 SLVVKLADTDRE 78
Score = 69 (29.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 172 EREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED--IFIVRDELKQSRGCAFVQFS 229
+RE P L++ L ++ E+ + F P+G + +F+ R QS+ FV F
Sbjct: 250 QREGPEGC--NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDR-ATNQSKCFGFVSFD 306
Query: 230 HREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+ A AI +NG F + G + L V++ PK
Sbjct: 307 NPTSAQTAIQAMNG-FQI-GMKR-LKVQLKRPK 336
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 170 (64.9 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 65/258 (25%), Positives = 111/258 (43%)
Query: 67 PFIGRKRG-FNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDK 125
P G + N + D + S P K+++ + T E++R F G V E ++ +D
Sbjct: 21 PVDGHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDP 80
Query: 126 RTGQQQGYCFVKFTIFEEAGNAIRALNGH-YIFPGEQASIKVRFADGEREHPVAPPDKLY 184
T + +G+ F+ F + + + LN + G++ KV F + V K++
Sbjct: 81 ATKRARGFGFITFV---DPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVF 137
Query: 185 VGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQS-RGCAFVQFSHREMA--LAAIS-- 239
+G LS ++ +++++ F YG +ED ++ D+ Q RG FV F E+A + I
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFH 197
Query: 240 GLNGTFTMRGSDQPLVVRI-ADPKKPRTGELRGNYAFGTPSFGPNFLEPVRPPPNLGNSA 298
+NG QP V + K R R Y G P L + P G
Sbjct: 198 EINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLY--GMPP--ETLLAYAQYLPRFG--- 250
Query: 299 GGQILPNVSYRPQHIFNN 316
G + PN + ++FNN
Sbjct: 251 GNLMYPNFT----NVFNN 264
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 173 (66.0 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 49/195 (25%), Positives = 92/195 (47%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
K++V + R T + F ++G + + V+ KD++TGQ +G+ FV + ++ +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA---DSSVVDKV 99
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI 210
+ ++I G+Q IK G K++VG + E +E F +G +++
Sbjct: 100 IQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEH 159
Query: 211 FIVRDELK-QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP----- 264
I+RD +SRG FV + +M ++ N + G+ + ++ A+PKKP
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGN-RIELSGTQ--VEIKKAEPKKPNSVTT 216
Query: 265 ---RTGELRGNYAFG 276
R G+ R N+ G
Sbjct: 217 PSKRFGDSRSNFGGG 231
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 176 (67.0 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 78/315 (24%), Positives = 134/315 (42%)
Query: 47 HYQYDQMSSEPTDFFNGQPMP----FIGRKRGFNHPAPDHINDSGIPAK----LYVAPVP 98
H++ + + + + NG + F+GR + + + G AK +Y+
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKS----RKEREAELGAKAKEFTNVYIKNFG 199
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH---- 154
+E ++ LF + G + V + +D G+ +G+ FV + E+A A+ +NG
Sbjct: 200 EEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISG 258
Query: 155 -YIFPGE-------QASIKVRFADGEREHPVAPPD-KLYVGCLSKQTSKKEIEEVFSPYG 205
IF G QA +K +F ++E LY+ L +++ + FSP+G
Sbjct: 259 KIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 206 HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265
I ++ ++ +S+G FV FS E A A++ +NG GS +PL V +A K+ R
Sbjct: 319 SITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS-KPLYVALAQRKEER 374
Query: 266 TGELRGNY---AFGTPSFGPN-FLEPVRPPPNLGNSAGGQILPNVSY---RPQHIFNNSH 318
L Y G + N L +P +AGG +P V RP + N
Sbjct: 375 KAHLTNQYMQRVAGMRALPANAILNQFQP------AAGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 319 PQVFSNWGNQEAATP 333
Q+ N Q+ P
Sbjct: 429 AQMRPNPRWQQGGRP 443
Score = 149 (57.5 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 57/204 (27%), Positives = 91/204 (44%)
Query: 86 SGIP-AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
S P A LYV + TE + F G V+ + + +D T + GY +V F +A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 145 GNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPY 204
A+ +N I G+ I++ ++ + + +++ L K K + + FS +
Sbjct: 66 ERALDTMNFDVI-KGKP--IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 205 GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264
G+I +V DE S+G AFV F +E A AI +NG M +D+ + V +K
Sbjct: 123 GNILSCKVVCDE-NGSKGYAFVHFETQEAADKAIEKMNG---MLLNDRKVFVGRFKSRKE 178
Query: 265 RTGELRGNYAFGTPSFGPNFLEPV 288
R EL T + NF E V
Sbjct: 179 REAELGAKAKEFTNVYIKNFGEEV 202
Score = 142 (55.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 53/221 (23%), Positives = 98/221 (44%)
Query: 59 DFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE 118
D G+P+ + +R P+ + SG+ +++ + ++ + + F GN++
Sbjct: 75 DVIKGKPIRIMWSQRD---PS---LRKSGV-GNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 119 VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-----HYIFPGEQASIKVRFAD-GE 172
+ D+ G + GY FV F E A AI +NG +F G S K R A+ G
Sbjct: 128 CKVVCDEN-GSK-GYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 173 REHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHRE 232
+ +Y+ ++ + ++E+FS +G + ++RD +S+G FV + E
Sbjct: 186 KAKEFT---NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 242
Query: 233 MALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
A A+ +NG S + + V A K R EL+ +
Sbjct: 243 DANKAVEEMNGKEI---SGKIIFVGRAQKKVERQAELKRKF 280
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 178 (67.7 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRA 150
K++V +PR E+++ PLFE+ G + ++ L D +GQ +GY F+ F E A A++
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 151 LNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH-IED 209
+ + I PG+ + + A+ ++L+VG + K +K+ I E FS + D
Sbjct: 188 CDSYEIRPGKHLGVCISVAN----------NRLFVGSIPKNKTKENILEEFSKVTEGLVD 237
Query: 210 IFIVR--DELKQSRGCAFVQFS-HREMALAAISGLNGTFTMRGSDQPLVVRIADP 261
+ + D+ K++RG F+++ H+ A A ++G + G+ + V ADP
Sbjct: 238 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN--VVTVEWADP 290
Score = 152 (58.6 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 58/220 (26%), Positives = 104/220 (47%)
Query: 91 KLYVAPVPRTATEEDIRPLFEE-HGNVIEVVL---PKDKRTGQQQGYCFVKFTIFEEAGN 146
+L+V +P+ T+E+I F + +++V+L P DK+ + +G+CF+++ + A
Sbjct: 209 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 266
Query: 147 AIRAL-NGHYIFPGEQASIKVRFADG-EREHP--VAPPDKLYVGCLSKQTSKKEIEEVFS 202
A R L +G G + V +AD E P +A L+V L+ +++ +E+ FS
Sbjct: 267 ARRRLMSGKVKVWGNV--VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 324
Query: 203 PYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G +E + K+ + AFV F R A+ A+ +NG + G + +V+ P
Sbjct: 325 EFGKLERV-------KKLKDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLA-KPPD 375
Query: 263 KPRTGELRGNYAFGTPSFGPNFLEPV--RPPPNLGNSAGG 300
K R A + ++ + P PPP G GG
Sbjct: 376 KKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGG 415
Score = 42 (19.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 27/105 (25%), Positives = 39/105 (37%)
Query: 237 AISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSF------GPNFLEPVRP 290
A+ G G RG+ P R A P + R G + G P GP + R
Sbjct: 460 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 519
Query: 291 PP----NLGNSAGGQILPNVSYRPQHIFNNSHPQVFSNWGNQEAA 331
N G + GG+ + +P ++ Q NWG+Q A
Sbjct: 520 SRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQ--QNWGSQPIA 562
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 164 (62.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 47/193 (24%), Positives = 88/193 (45%)
Query: 47 HYQYDQMSSEPTDFFNGQPMPFIGRKRGF-NHPAPDHINDSGIP------AKLYVAPVPR 99
HY+ D+ +S+ NG + K+ + H P S +YV +
Sbjct: 195 HYETDEAASQAIKHVNGM---LLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINP 251
Query: 100 TATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN-----GH 154
T+++ R LFE++G+V L +D+ TG+ +G+ FV FT E+A A++ LN G
Sbjct: 252 EVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQ 311
Query: 155 YIFPGEQASIKVRFADGEREHPVAPPDK--------LYVGCLSKQTSKKEIEEVFSPYGH 206
++ G R + + + A +K LY+ L + +++ ++FS +G
Sbjct: 312 NLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGP 371
Query: 207 IEDIFIVRDELKQ 219
I ++RD + +
Sbjct: 372 ITSAKVMRDSITE 384
Score = 143 (55.4 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 50/170 (29%), Positives = 75/170 (44%)
Query: 110 FEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY-----IFPGEQASI 164
F GN++ + +D+ G +GY FV + E A AI+ +NG ++ G
Sbjct: 169 FAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPK 227
Query: 165 KVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGC 223
K R + + A +YV ++ + + E +F YG + + RD E +SRG
Sbjct: 228 KDR--QSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGF 285
Query: 224 AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
FV F+ E A A+ LN G Q L V A K R ELR +Y
Sbjct: 286 GFVNFTSHEDASKAVQELNEK-EFHG--QNLYVGRAQKKHEREEELRKSY 332
Score = 140 (54.3 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 44/187 (23%), Positives = 84/187 (44%)
Query: 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIR 149
A LYV + + TE + LF + G+V + + +D T + GY +V + + A+
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 150 ALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED 209
LN + + G ++ ++ + +++ L K + + F+ +G+I
Sbjct: 121 ELN-YTLIKGRPC--RIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILS 177
Query: 210 IFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTG-- 267
+ +DE S+G FV + E A AI +NG M +++ + V PKK R
Sbjct: 178 CKVAQDENGNSKGYGFVHYETDEAASQAIKHVNG---MLLNEKKVYVGHHIPKKDRQSKF 234
Query: 268 -ELRGNY 273
E++ N+
Sbjct: 235 DEMKANF 241
Score = 60 (26.2 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 214 RDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGEL 269
+ +L +S+G FV F++ + A A++ +N +++PL V +A K R +L
Sbjct: 426 KSKLGKSKGFGFVCFANPDDATKAVAEMNQRMV---NNKPLYVALAQRKDVRKNQL 478
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 114 (45.2 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 33/131 (25%), Positives = 62/131 (47%)
Query: 181 DKLYVGCLSKQTSKKEIEEVFSPYGHI-EDIFIVRDELKQSRGCAFVQFSHREMALAAIS 239
+ +++ L + K ++ E+FS YG + E ++ SRG V++ + A+ A+
Sbjct: 219 NNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVK 278
Query: 240 GLNGTFTMRGSDQPLVVRIAD---PKKPRTGELRGNYAFGTPSFGP---NFLEPVRPPPN 293
LNG F ++ ++PL+VR AD KK + +L+ F P + +
Sbjct: 279 SLNG-FILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVRQNMRFSPYPQQQQQQQQQQQQ 337
Query: 294 LGNSAGGQILP 304
+ NS+G + P
Sbjct: 338 MMNSSGAMMYP 348
Score = 112 (44.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 28/99 (28%), Positives = 51/99 (51%)
Query: 76 NHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135
N+ ++I++ I +++ +P + + LF +G V+E L D T +G
Sbjct: 205 NNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGL 264
Query: 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174
V++ + A NA+++LNG +I + + VRFAD E E
Sbjct: 265 VRYIDTQSAINAVKSLNG-FILQDPEKPLIVRFADNEDE 302
Score = 107 (42.7 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEE 143
++S L+++ +P T T + +R +F G + + D TG +G+ FVKF
Sbjct: 93 SNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVAS 152
Query: 144 AGNAIRALNGHYIFPGEQASIKVRFADGE 172
A AI ++NG + E ++ VRFA+ +
Sbjct: 153 AQYAINSMNGAKV---ENKTLLVRFANSD 178
Score = 91 (37.1 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 174 EHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQ-SRGCAFVQFSHRE 232
++P P LYV L + +FSP G I + IVRD+ Q RG FV+
Sbjct: 375 KNPGTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLA 434
Query: 233 MALAAISGLNG 243
+ +AI+ +NG
Sbjct: 435 DSYSAINSING 445
Score = 60 (26.2 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 16 NPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPF 68
+PNS + N + ++DD +N +N +S++ D+ F G P+ F
Sbjct: 178 DPNSNNTNNSNNNNDDDNNNNNNNNNSNNNNTNNIDEQKISNNVFIRGLPIEF 230
Score = 54 (24.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 360 PRQNSQLSQQAVSDMQKQLHLRQSSTQNVEQQQN--SHVIVSESESPRSGNNPQTSASAS 417
P+Q Q QQ M + QN+ + + +I S S+ P G NP T +
Sbjct: 325 PQQQQQQQQQQQQMMNSSGAMMYPFYQNMPTMNSLPNSMIGSSSQPPPGGKNPGTDPTNL 384
Query: 418 TIPTVP 423
+ +P
Sbjct: 385 YVYNLP 390
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 168 (64.2 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 55/183 (30%), Positives = 87/183 (47%)
Query: 90 AKLYVAPVPRTATEEDIRPLFEEHGNV--IEVVLPKDKRTGQQQGYCFVKFTIFEEAGNA 147
AKL+V +P + + LFE+ G V EV+ +D T Q +G+ FV + EEA A
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRD--TDQSRGFGFVTMSTVEEAEKA 170
Query: 148 IRALNGHYIFPGEQASIKVRFADGER-EHPVAPPD---KLYVGCLSKQTSKKEIEEVFSP 203
+ N + G + ++ G R E D ++YVG L +E +FS
Sbjct: 171 VEKFNSFEV-NGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 204 YGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262
+G + D +V D E +SRG FVQ S+ AI+ L+G + G + + V +A+ +
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ-NLEG--RAIKVNVAEER 286
Query: 263 KPR 265
R
Sbjct: 287 TRR 289
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 161 (61.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 47/173 (27%), Positives = 85/173 (49%)
Query: 83 INDSGIP--AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTI 140
+N +G KL+V + + T+E +R F ++G V++ V+ KDK T Q +G+ FVKF
Sbjct: 1 MNSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Query: 141 FEEAGNAIRA----LNGHYIFP------GEQASIKVRFADGEREHP---VAPPDKLYVGC 187
G + + L+G I P G Q + R +G ++ P + +K++VG
Sbjct: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPE-RTRPKEGWQKGPRSDSSKSNKIFVGG 119
Query: 188 LSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQS-RGCAFVQFSHREMALAAIS 239
+ + E+ E F +G + ++ ++ D KQ RG F+ F + A++
Sbjct: 120 IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Score = 54 (24.1 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 260 DPKKPRTGELR---GNYAFGTP--SFGPNFLEPVRPPPNLG 295
D KP T + G Y +G FG F +P + PP+ G
Sbjct: 333 DMSKPPTAQPDFPYGQYGYGQDLSGFGQGFSDPSQQPPSYG 373
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 161 (61.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 47/173 (27%), Positives = 85/173 (49%)
Query: 83 INDSGIP--AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTI 140
+N +G KL+V + + T+E +R F ++G V++ V+ KDK T Q +G+ FVKF
Sbjct: 1 MNSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Query: 141 FEEAGNAIRA----LNGHYIFP------GEQASIKVRFADGEREHP---VAPPDKLYVGC 187
G + + L+G I P G Q + R +G ++ P + +K++VG
Sbjct: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPE-RTRPKEGWQKGPRSDSSKSNKIFVGG 119
Query: 188 LSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQS-RGCAFVQFSHREMALAAIS 239
+ + E+ E F +G + ++ ++ D KQ RG F+ F + A++
Sbjct: 120 IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Score = 54 (24.1 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 260 DPKKPRTGELR---GNYAFGTP--SFGPNFLEPVRPPPNLG 295
D KP T + G Y +G FG F +P + PP+ G
Sbjct: 333 DMSKPPTAQPDFPYGQYGYGQDLSGFGQGFSDPSQQPPSYG 373
>UNIPROTKB|E2RA90 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:AAEX03013537 EMBL:AAEX03013538 EMBL:AAEX03013539
Ensembl:ENSCAFT00000008829 Uniprot:E2RA90
Length = 437
Score = 174 (66.3 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 58/231 (25%), Positives = 96/231 (41%)
Query: 37 PDNY--HSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYV 94
P Y ++++ HY + S P P P N+ + + + LY+
Sbjct: 8 PQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSP--STNSSSNNSSSNSSGEQLSKTNLYI 65
Query: 95 APVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154
+P T++D+ L + +G ++ DK T Q +GY FV F A A+ +L +
Sbjct: 66 RGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKAN 125
Query: 155 YIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVR 214
G QA + A + + P LY+ L ++E+E + P+GH+ I+R
Sbjct: 126 ----GVQAQM----AKQQEQDPT----NLYISNLPISMDEQELENMLKPFGHVISTRILR 173
Query: 215 DELKQSRGCAFVQFSHREMALAAISGLNGTF--TMRG---SDQPLVVRIAD 260
D SRG F + E I NG + T G +PL+ + AD
Sbjct: 174 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFAD 224
Score = 41 (19.5 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 408 NNPQTSASASTIPTVPQSPQVAASP 432
++P + A+ IP +P +AASP
Sbjct: 267 SSPYSIATNRMIPQTSITPFIAASP 291
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 175 (66.7 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 56/191 (29%), Positives = 89/191 (46%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
+YV + +EE LF G + + L KD+ G+ +G+ FV F E A A+ L
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 152 N-----GHYIFPGEQASIKVRFADGEREHPVAPPDKL--YVGC------LSKQTSKKEIE 198
N G I+ G + R + ++++ +KL Y G L +++E
Sbjct: 294 NDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLE 353
Query: 199 EVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258
E F P+G I ++ DE +S+G FV F+ E A AI+ +N T + G +PL V +
Sbjct: 354 EEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMN-TRMING--KPLYVAL 410
Query: 259 ADPKKPRTGEL 269
A K R +L
Sbjct: 411 AQRKDVRRSQL 421
Score = 169 (64.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 60/240 (25%), Positives = 106/240 (44%)
Query: 39 NYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVP 98
NYH + ++++ P + G+P + +R P+ D I ++ +
Sbjct: 99 NYHKYEDGEKAIEELNYNPIE---GRPCRIMWSQRD---PSARRSGDGNI----FIKNLH 148
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG----- 153
+ + F G ++ + D+ GQ + + FV + E A AI +NG
Sbjct: 149 PAIDNKALHDTFSAFGKILSCKVATDE-FGQSKCFGFVHYETAEAAEAAIENVNGMLLND 207
Query: 154 HYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIV 213
+F G+ S K R + + E A +YV + S++ E++FSP+G I I++
Sbjct: 208 REVFVGKHISKKDR--ESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLE 265
Query: 214 RDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNY 273
+D+ +S+G FV F E A+ A+ LN + G Q + V A K+ R EL+ Y
Sbjct: 266 KDQDGKSKGFGFVNFEDHESAVKAVEELNDK-EING--QKIYVGRAQKKRERLEELKKQY 322
Score = 140 (54.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 46/187 (24%), Positives = 82/187 (43%)
Query: 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIR 149
A LYV + + E + +F G V + + +D + + GY +V + +E+ AI
Sbjct: 52 ASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIE 111
Query: 150 ALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED 209
LN + P E ++ ++ + + +++ L K + + FS +G I
Sbjct: 112 ELNYN---PIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILS 168
Query: 210 IFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTG-- 267
+ DE QS+ FV + E A AAI +NG M +D+ + V KK R
Sbjct: 169 CKVATDEFGQSKCFGFVHYETAEAAEAAIENVNG---MLLNDREVFVGKHISKKDRESKF 225
Query: 268 -ELRGNY 273
E++ N+
Sbjct: 226 EEMKANF 232
>UNIPROTKB|B4MM23 [details] [associations]
symbol:shep "Protein alan shepard" species:7260 "Drosophila
willistoni" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH963847 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002062046.1 ProteinModelPortal:B4MM23 GeneID:6639197
KEGG:dwi:Dwil_GK17327 FlyBase:FBgn0219326 InParanoid:B4MM23
Uniprot:B4MM23
Length = 581
Score = 174 (66.3 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 51/174 (29%), Positives = 82/174 (47%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
LY+ + + T++D+ + ++G +I DK T + +GY FV F A NA++ L
Sbjct: 239 LYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAENAVKGL 298
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
G QA + A + + P LY+ L + ++E + S YG +
Sbjct: 299 QAK----GVQAQM----AKQQEQDPT----NLYIANLPPHFKETDLEAMLSKYGQVVSTR 346
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD--PKK 263
I+RD+ S+G F + RE I NG T+ G+ PL+V+ AD PKK
Sbjct: 347 ILRDQQMNSKGVGFARMESREKCEQIIQMFNGN-TIPGAKDPLLVKFADGGPKK 399
>UNIPROTKB|D4A9S4 [details] [associations]
symbol:Tardbp "Protein Tardbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310906 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00197538 ProteinModelPortal:D4A9S4
Ensembl:ENSRNOT00000017922 ArrayExpress:D4A9S4 Uniprot:D4A9S4
Length = 288
Score = 167 (63.8 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 40/143 (27%), Positives = 75/143 (52%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE---TQVKVM 162
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + + P+ K++VG ++ + +E+++ F YG + D+F
Sbjct: 163 SQRHMIDGRWCDCKLPNSKQSPDEPLRSR-KVFVGRCTEDMTAEELQQFFCQYGEVVDVF 221
Query: 212 IVRDELKQSRGCAFVQFSHREMA 234
I K R AFV F+ ++A
Sbjct: 222 IP----KPFRAFAFVTFADDKVA 240
>ZFIN|ZDB-GENE-030131-4967 [details] [associations]
symbol:rbms1a "RNA binding motif, single stranded
interacting protein 1a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4967 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CR792451
IPI:IPI00507907 Ensembl:ENSDART00000064860 Bgee:E7FAG7
Uniprot:E7FAG7
Length = 398
Score = 171 (65.3 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 53/185 (28%), Positives = 84/185 (45%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
LY+ +P T+ D+ L + +G ++ DK T + +GY FV F A A+ AL
Sbjct: 59 LYIRGLPPGTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAVAAL 118
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ G QA + A + + P LY+ L ++E+E + P+G +
Sbjct: 119 KTN----GVQAQM----AKQQEQDPT----NLYLSNLPVSMDEQELENLLKPFGQVVSTR 166
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFT-----MRGSDQPLVVRIADP-KKPR 265
I+RD SRG F + E A IS NG F M G+ +PL+ + AD +K R
Sbjct: 167 ILRDTNGMSRGVGFARMESTEKCDAVISHFNGKFIKSSSGMLGASEPLLCKFADGGQKKR 226
Query: 266 TGELR 270
+ +
Sbjct: 227 QSQAK 231
>UNIPROTKB|J3QT21 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC012262 EMBL:AC021068 EMBL:AC092795 EMBL:AC092796
EMBL:AC097633 EMBL:AC098650 EMBL:AC099048 HGNC:HGNC:13427
ChiTaRS:RBMS3 ProteinModelPortal:J3QT21 Ensembl:ENST00000396583
Uniprot:J3QT21
Length = 434
Score = 173 (66.0 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 58/231 (25%), Positives = 96/231 (41%)
Query: 37 PDNY--HSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYV 94
P Y ++++ HY + S P P P N+ + + + LY+
Sbjct: 8 PQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSP--STNSSSNNSSNNSSGEQLSKTNLYI 65
Query: 95 APVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154
+P T++D+ L + +G ++ DK T Q +GY FV F A A+ +L +
Sbjct: 66 RGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKAN 125
Query: 155 YIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVR 214
G QA + A + + P LY+ L ++E+E + P+GH+ I+R
Sbjct: 126 ----GVQAQM----AKQQEQDPT----NLYISNLPISMDEQELENMLKPFGHVISTRILR 173
Query: 215 DELKQSRGCAFVQFSHREMALAAISGLNGTF--TMRG---SDQPLVVRIAD 260
D SRG F + E I NG + T G +PL+ + AD
Sbjct: 174 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFAD 224
Score = 41 (19.5 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 408 NNPQTSASASTIPTVPQSPQVAASP 432
++P + A+ IP +P +AASP
Sbjct: 280 SSPYSIATNRMIPQTSITPFIAASP 304
>FB|FBgn0031607 [details] [associations]
symbol:CG15440 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
eggNOG:COG0724 GeneTree:ENSGT00510000047100 EMBL:AY089645
RefSeq:NP_608837.2 UniGene:Dm.4903 SMR:Q8SXG7 IntAct:Q8SXG7
MINT:MINT-300703 STRING:Q8SXG7 EnsemblMetazoa:FBtr0077454
GeneID:33652 KEGG:dme:Dmel_CG15440 UCSC:CG15440-RA
FlyBase:FBgn0031607 InParanoid:Q8SXG7 OMA:EREFSVW OrthoDB:EOG4F7M1N
ChiTaRS:CG15440 GenomeRNAi:33652 NextBio:784624 Uniprot:Q8SXG7
Length = 336
Score = 169 (64.5 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 55/201 (27%), Positives = 99/201 (49%)
Query: 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEA 144
+ + +L++ + TE I F + G + V L ++K TG+ GYCFV F + A
Sbjct: 2 ASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHA 61
Query: 145 GNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDK---LYVGCLSKQTSKKEIEEVF 201
+A+ LNG I PG ++ R + + ++ ++VG LS ++ +VF
Sbjct: 62 LDAMHKLNGKPI-PGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVF 120
Query: 202 SP-YGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260
S + I+ ++ D L S+G FV+F + +A+ +NG + G+ +P+ + A
Sbjct: 121 SSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGL-GT-KPIKICNAV 178
Query: 261 PKKPRTGELRGNYAFGTPSFG 281
PK P++ EL G G ++G
Sbjct: 179 PK-PKS-ELGGAVGEGNTNYG 197
>UNIPROTKB|Q6XE24 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
EMBL:CH471055 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 HSSP:Q15434 EMBL:AF023259
EMBL:AY236871 EMBL:AY236872 EMBL:AK292789 EMBL:AC012262
EMBL:AC021068 EMBL:AC092795 EMBL:AC092796 EMBL:AC097633
EMBL:AC098650 EMBL:AC099048 EMBL:BC117315 EMBL:BC143521
IPI:IPI00298424 IPI:IPI00472404 IPI:IPI00827856 IPI:IPI00985081
RefSeq:NP_001003792.1 RefSeq:NP_001003793.1 RefSeq:NP_001171182.1
RefSeq:NP_001171183.1 RefSeq:NP_055298.2 UniGene:Hs.221436
ProteinModelPortal:Q6XE24 SMR:Q6XE24 STRING:Q6XE24
PhosphoSite:Q6XE24 DMDM:74762382 PaxDb:Q6XE24 PRIDE:Q6XE24
Ensembl:ENST00000273139 Ensembl:ENST00000383766
Ensembl:ENST00000383767 Ensembl:ENST00000452462
Ensembl:ENST00000456853 GeneID:27303 KEGG:hsa:27303 UCSC:uc003cek.3
UCSC:uc003cel.3 UCSC:uc003cem.3 UCSC:uc010hfq.3 CTD:27303
GeneCards:GC03P029298 HGNC:HGNC:13427 HPA:HPA034719 MIM:605786
neXtProt:NX_Q6XE24 PharmGKB:PA34276 InParanoid:Q6XE24 OMA:QQMTVET
OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3 GenomeRNAi:27303 NextBio:50293
ArrayExpress:Q6XE24 Bgee:Q6XE24 CleanEx:HS_RBMS3
Genevestigator:Q6XE24 Uniprot:Q6XE24
Length = 437
Score = 173 (66.0 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 58/231 (25%), Positives = 96/231 (41%)
Query: 37 PDNY--HSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYV 94
P Y ++++ HY + S P P P N+ + + + LY+
Sbjct: 8 PQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSP--STNSSSNNSSNNSSGEQLSKTNLYI 65
Query: 95 APVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154
+P T++D+ L + +G ++ DK T Q +GY FV F A A+ +L +
Sbjct: 66 RGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKAN 125
Query: 155 YIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVR 214
G QA + A + + P LY+ L ++E+E + P+GH+ I+R
Sbjct: 126 ----GVQAQM----AKQQEQDPT----NLYISNLPISMDEQELENMLKPFGHVISTRILR 173
Query: 215 DELKQSRGCAFVQFSHREMALAAISGLNGTF--TMRG---SDQPLVVRIAD 260
D SRG F + E I NG + T G +PL+ + AD
Sbjct: 174 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFAD 224
Score = 41 (19.5 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 408 NNPQTSASASTIPTVPQSPQVAASP 432
++P + A+ IP +P +AASP
Sbjct: 267 SSPYSIATNRMIPQTSITPFIAASP 291
>UNIPROTKB|E1BTJ0 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:AADN02001158 EMBL:AADN02001159 EMBL:AADN02001160
EMBL:AADN02001161 EMBL:AADN02001162 IPI:IPI00583817
Ensembl:ENSGALT00000018654 Uniprot:E1BTJ0
Length = 433
Score = 170 (64.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 56/225 (24%), Positives = 94/225 (41%)
Query: 41 HSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRT 100
++++ HY + S P P P N+ + + + LY+ +P
Sbjct: 14 YTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSS---NNSSNNSSGEQLSKTNLYIRGLPPG 70
Query: 101 ATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160
T++D+ L + +G ++ DK T Q +GY FV F A A+ +L + G
Sbjct: 71 TTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKAN----GV 126
Query: 161 QASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQS 220
QA + A + + P LY+ L ++E+E + P+GH+ I+RD S
Sbjct: 127 QAQM----AKQQEQDPT----NLYISNLPVSMDEQELENMLKPFGHVISTRILRDANGVS 178
Query: 221 RGCAFVQFSHREMALAAISGLNGTF--TMRG---SDQPLVVRIAD 260
RG F + E I NG + T G +PL+ + AD
Sbjct: 179 RGVGFARMESTEKCEVVIQHFNGKYLKTPPGLPAPTEPLLCKFAD 223
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 163 (62.4 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 52/185 (28%), Positives = 85/185 (45%)
Query: 67 PFIGRKRGFNHP-----APDHINDSGIPA------KLYVAPVPRTATEEDIRPLFEEHGN 115
P GRK P AP H + S A KL+V + + T+E +R F ++G
Sbjct: 21 PTGGRKERLGGPEGTSGAPSHSSVSARKAAQAALRKLFVGGLDWSTTQETLRSYFSQYGE 80
Query: 116 VIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREH 175
V++ V+ KDK T Q +G+ FVKF G + A H + G K + G R
Sbjct: 81 VVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL-ASRPHTL-DGRNIDPKQK---GPRSD 135
Query: 176 PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQS-RGCAFVQFSHREMA 234
+ +K++VG + + E+ E F +G + ++ ++ D KQ RG F+ F +
Sbjct: 136 N-SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 194
Query: 235 LAAIS 239
A++
Sbjct: 195 DQAVN 199
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 167 (63.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 49/172 (28%), Positives = 79/172 (45%)
Query: 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAG 145
SG +LYV +P T T ++ +F E G V++V + DK T + +G+ FV EEA
Sbjct: 112 SGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 171
Query: 146 NAIRALNGHYI--------FP-----GEQASIKVRFADGEREHPVAPPDKLYVGCLSKQT 192
A++ N I FP GE ++ + D R + V P K+Y G L
Sbjct: 172 EAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSY-VDSPHKVYAGNLGWNL 230
Query: 193 SKKEIEEVFSPY-GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243
+ + +++ F G + I +SRG F+ F E +A++ +NG
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 282
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 125 (49.1 bits), Expect = 0.00037, P = 0.00037
Identities = 37/128 (28%), Positives = 61/128 (47%)
Query: 43 HHRRHYQYDQMSSEPT---DFFNGQ-PMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVP 98
HH + Q Q P Q P P + + P P IN++ +++Y+ +
Sbjct: 723 HHTQQPQQQQQQQHPILSQSHHPPQHPTPDVPKPNESAPPVP--INEA---SRIYIGSIN 777
Query: 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP 158
TE+ +R +F + G VI L ++ TG+ +G+ FV F + + A +AI +NG +
Sbjct: 778 WNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIATMNGFELL- 836
Query: 159 GEQASIKV 166
G SIKV
Sbjct: 837 GR--SIKV 842
Score = 119 (46.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 37/126 (29%), Positives = 61/126 (48%)
Query: 43 HHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIP--AKLYVAPVPRT 100
H H+Q SS PT P I + P P +N S +++YV + +
Sbjct: 544 HQLHHHQTQIFSSIPTS-----PSTTIIQPTTTTTPIPPTLNQSTSQDQSRIYVGSLHFS 598
Query: 101 ATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160
TE+ IR F GN+ + L KD +G+ +GY F+++ E A A++++ +Y+ G
Sbjct: 599 LTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAKALQSMT-NYVMCGR 656
Query: 161 QASIKV 166
+IKV
Sbjct: 657 --AIKV 660
Score = 107 (42.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 32/154 (20%), Positives = 70/154 (45%)
Query: 176 PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMA 234
P+ ++Y+G ++ ++ ++ +FS +G + F++++ + + +G FV F ++ A
Sbjct: 764 PINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSA 823
Query: 235 LAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRGNYAFGTPSFGPNFLEPVRPPPNL 294
AI+ +NG F + G +++ P K N + + N N+
Sbjct: 824 DDAIATMNG-FELLGRS----IKVGRPTKSSNNNNNNNNSINNNNNTNNNNNNNNINNNI 878
Query: 295 GNSAGGQILPN-VSYRPQHIFNNSHPQVFSNWGN 327
N+ N + +I NN++ +F+N GN
Sbjct: 879 NNNNNNNNNNNNTNTNNNNINNNNNNNIFNN-GN 911
Score = 74 (31.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 21/68 (30%), Positives = 27/68 (39%)
Query: 360 PRQNSQLSQQAVSDMQKQLH----LRQSSTQNVEQQQNSHVIVSESESPRSGNNPQTSAS 415
P Q Q QQ Q+H L + Q +QQQ H I+S+S P P
Sbjct: 697 PVQQQQPQQQQQQQQPLQIHHQSLLPHHTQQPQQQQQQQHPILSQSHHPPQHPTPDVPKP 756
Query: 416 ASTIPTVP 423
+ P VP
Sbjct: 757 NESAPPVP 764
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 169 (64.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/215 (26%), Positives = 102/215 (47%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 105 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYE---TQVKVM 161
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + + P+ K++VG ++ + E+++ F YG + D+F
Sbjct: 162 SQRHMIDGRWCDCKLPNSKQSPDEPLRSR-KVFVGRCTEDMTADELQQFFCQYGEVVDVF 220
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRG 271
I K R AFV F+ ++A ++ G + ++G + + A+PK +L
Sbjct: 221 IP----KPFRAFAFVTFADDQVA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 271
Query: 272 NYAFG-TPS-FGPN--FLEPVRPPPNLGNSAGGQI 302
+ FG P FG F LGN+ G +
Sbjct: 272 SGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNM 306
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 165 (63.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 57/186 (30%), Positives = 89/186 (47%)
Query: 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIR 149
A +YV + E + + + G V+ + +P D+ + QGY FV+F E A A R
Sbjct: 12 ATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAAR 71
Query: 150 ALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH-IE 208
ALNG +F G+ I+V A +++ +L+V L Q +K + + FS +G +
Sbjct: 72 ALNGIRVF-GKV--IRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVT 128
Query: 209 DIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
+VRD S+G FV F E + A +NG + + S Q + V A KK GE
Sbjct: 129 PPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLL--SKQ-ITVEYAY-KKDGKGE 184
Query: 269 LRGNYA 274
G+ A
Sbjct: 185 RHGDEA 190
Score = 46 (21.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 287 PVRPPPNLGNSAG 299
P RPPP++G G
Sbjct: 319 PARPPPSMGGPPG 331
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 169 (64.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 53/229 (23%), Positives = 101/229 (44%)
Query: 48 YQYDQMSSEPTDFFNGQPMPFIGRKRGFN--HPAPDHINDSGIPAK-LYVAPVPRTATEE 104
Y M+ + + Q MP+ + + +P I S K +++ + + E
Sbjct: 39 YPAAAMAMQQQMMYGQQYMPYYQQHQQQQKMQQSPTQIQSSSEDNKTIWIGDLQQWMDES 98
Query: 105 DIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164
+ F + G VI V + ++K+TGQ + Y FV+F A +++ NG + P +
Sbjct: 99 YLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGT-MMPNTEQPF 157
Query: 165 KVR---FADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVF-SPYGHIEDIFIVRD-ELKQ 219
++ F+ GE+ ++VG L+ + + + F S Y ++ +V D
Sbjct: 158 RLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGH 217
Query: 220 SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGE 268
S+G FV+F A++ +NG + S + + + +A PKKP E
Sbjct: 218 SKGYGFVRFGDESERSRAMTEMNGVYC---SSRAMRIGVATPKKPSAHE 263
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 165 (63.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 48/185 (25%), Positives = 91/185 (49%)
Query: 92 LYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151
L V +P TE+D++ F G V+ V + KD +TG +G+ FV+FT +E ++ +
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYE---TQVKVM 162
Query: 152 NGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211
+ ++ G K+ + + P+ K++VG ++ + E+ + F YG + D+F
Sbjct: 163 SQRHMIDGRWCDCKLPNSKQSPDEPLRSR-KVFVGRCTEDMTADELRQFFCQYGEVVDVF 221
Query: 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRTGELRG 271
I K R AFV F+ ++A ++ G + ++G + + A+PK +L
Sbjct: 222 IP----KPFRAFAFVTFADDQVA-QSLCGED--LIIKGIS--VHISNAEPKHNSNRQLER 272
Query: 272 NYAFG 276
+ FG
Sbjct: 273 SGRFG 277
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 164 (62.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 46/157 (29%), Positives = 75/157 (47%)
Query: 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNA 147
+P LYV + R TE I LF + G + D T YCFV+F A A
Sbjct: 1 MPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAA 58
Query: 148 IRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI 207
+ A+NG I G++ + ++ + ++VG LS + + ++I+ F+P+G I
Sbjct: 59 LAAMNGRKIM-GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI 117
Query: 208 EDIFIVRDELK-QSRGCAFVQFSHREMALAAISGLNG 243
D +V+D +S+G FV F ++ A AI + G
Sbjct: 118 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 154
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 164 (62.8 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 46/157 (29%), Positives = 75/157 (47%)
Query: 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNA 147
+P LYV + R TE I LF + G + D T YCFV+F A A
Sbjct: 5 MPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAA 62
Query: 148 IRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI 207
+ A+NG I G++ + ++ + ++VG LS + + ++I+ F+P+G I
Sbjct: 63 LAAMNGRKIM-GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI 121
Query: 208 EDIFIVRDELK-QSRGCAFVQFSHREMALAAISGLNG 243
D +V+D +S+G FV F ++ A AI + G
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 158
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 147 (56.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 40/140 (28%), Positives = 67/140 (47%)
Query: 93 YVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN 152
YV + R TE I LF + G + D T YCFV+F A A+ A+N
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 153 GHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFI 212
G I G++ + ++ + ++VG LS + + ++I+ F+P+G I D +
Sbjct: 60 GRKIM-GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 118
Query: 213 VRDELK-QSRGCAFVQFSHR 231
V+D +S+G FV F ++
Sbjct: 119 VKDMATGKSKGYGFVSFFNK 138
WARNING: HSPs involving 843 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 537 511 0.00087 119 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1093
No. of states in DFA: 609 (65 KB)
Total size of DFA: 329 KB (2165 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.57u 0.12s 58.69t Elapsed: 00:00:03
Total cpu time: 58.65u 0.12s 58.77t Elapsed: 00:00:03
Start: Mon May 20 22:24:54 2013 End: Mon May 20 22:24:57 2013
WARNINGS ISSUED: 2