Query 009356
Match_columns 537
No_of_seqs 509 out of 3827
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 03:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.2E-38 7.7E-43 317.0 19.8 238 3-265 28-267 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3.5E-37 1.2E-41 309.6 16.0 234 3-262 47-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 6.6E-36 2.3E-40 286.7 14.3 173 87-266 13-185 (213)
4 3nmr_A Cugbp ELAV-like family 100.0 3.1E-34 1.1E-38 265.1 18.2 172 88-260 2-175 (175)
5 3md3_A Nuclear and cytoplasmic 100.0 2E-33 6.7E-38 257.2 19.9 164 90-260 1-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 7.8E-33 2.7E-37 254.1 20.3 166 88-259 2-168 (168)
7 1l3k_A Heterogeneous nuclear r 100.0 6.4E-33 2.2E-37 261.4 19.8 174 85-266 9-187 (196)
8 1fxl_A Paraneoplastic encephal 100.0 1.8E-32 6.2E-37 251.0 19.6 163 89-259 2-167 (167)
9 2qfj_A FBP-interacting repress 100.0 2E-32 6.7E-37 262.1 20.0 170 88-263 27-206 (216)
10 2cjk_A Nuclear polyadenylated 100.0 1.4E-32 4.9E-37 252.2 12.6 164 88-262 2-166 (167)
11 1fje_B Nucleolin RBD12, protei 100.0 6.6E-32 2.3E-36 250.0 11.9 166 85-262 9-174 (175)
12 3pgw_A U1-A; protein-RNA compl 100.0 4.3E-30 1.5E-34 256.5 21.2 163 85-260 5-281 (282)
13 3tyt_A Heterogeneous nuclear r 100.0 2.9E-30 1E-34 245.7 18.6 163 88-259 3-204 (205)
14 2g4b_A Splicing factor U2AF 65 100.0 1E-29 3.5E-34 234.3 18.5 158 88-260 3-172 (172)
15 3sde_A Paraspeckle component 1 100.0 1.1E-29 3.9E-34 250.9 19.7 163 85-264 18-181 (261)
16 2yh0_A Splicing factor U2AF 65 100.0 1.4E-29 4.9E-34 238.8 19.2 164 88-264 3-196 (198)
17 2adc_A Polypyrimidine tract-bi 100.0 3.1E-29 1E-33 243.0 18.7 161 87-262 32-228 (229)
18 1qm9_A Polypyrimidine tract-bi 100.0 2.6E-29 8.8E-34 237.5 15.0 159 89-262 3-197 (198)
19 3smz_A Protein raver-1, ribonu 100.0 6.7E-28 2.3E-32 240.9 20.5 155 88-263 21-176 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 4E-28 1.4E-32 243.5 16.5 162 85-264 37-199 (292)
21 3md3_A Nuclear and cytoplasmic 99.9 1.9E-24 6.5E-29 197.3 9.0 160 3-170 6-165 (166)
22 4f02_A Polyadenylate-binding p 99.9 2.3E-24 7.9E-29 206.2 5.6 159 3-172 21-181 (213)
23 3nmr_A Cugbp ELAV-like family 99.9 3.9E-24 1.3E-28 197.1 6.9 164 3-170 9-175 (175)
24 1b7f_A Protein (SXL-lethal pro 99.9 1.2E-23 4.1E-28 192.6 8.4 160 3-169 9-168 (168)
25 1fxl_A Paraneoplastic encephal 99.9 1.5E-23 5.1E-28 191.5 8.7 160 3-169 8-167 (167)
26 2qfj_A FBP-interacting repress 99.9 1.7E-23 5.7E-28 199.8 9.3 167 3-174 34-207 (216)
27 1l3k_A Heterogeneous nuclear r 99.9 5.6E-23 1.9E-27 193.1 9.1 164 3-175 19-186 (196)
28 2g4b_A Splicing factor U2AF 65 99.9 6.3E-23 2.2E-27 188.7 9.0 152 3-170 10-172 (172)
29 2kn4_A Immunoglobulin G-bindin 99.9 3.5E-22 1.2E-26 181.8 12.7 143 118-265 2-153 (158)
30 3tyt_A Heterogeneous nuclear r 99.9 1.3E-22 4.5E-27 192.7 9.2 158 3-169 10-204 (205)
31 2cjk_A Nuclear polyadenylated 99.9 5E-23 1.7E-27 188.4 6.0 155 3-172 9-166 (167)
32 2yh0_A Splicing factor U2AF 65 99.9 2.5E-22 8.7E-27 188.9 9.9 160 3-174 10-196 (198)
33 4f25_A Polyadenylate-binding p 99.9 6E-22 2E-26 170.5 10.4 103 89-196 5-113 (115)
34 3sde_A Paraspeckle component 1 99.9 4.5E-22 1.5E-26 196.3 9.4 154 3-175 28-182 (261)
35 3pgw_A U1-A; protein-RNA compl 99.8 4.4E-21 1.5E-25 191.1 11.0 156 3-170 15-281 (282)
36 1qm9_A Polypyrimidine tract-bi 99.8 5.5E-21 1.9E-25 180.2 10.1 155 3-171 9-196 (198)
37 1fje_B Nucleolin RBD12, protei 99.8 1.9E-21 6.3E-26 179.5 5.1 155 3-172 19-174 (175)
38 2adc_A Polypyrimidine tract-bi 99.8 1.1E-20 3.7E-25 182.7 10.7 155 3-171 40-227 (229)
39 2i2y_A Fusion protein consists 99.8 1.6E-20 5.6E-25 169.3 10.6 126 127-263 9-149 (150)
40 4fxv_A ELAV-like protein 1; RN 99.8 2.8E-20 9.7E-25 155.5 11.1 82 87-171 17-98 (99)
41 3s8s_A Histone-lysine N-methyl 99.8 3.3E-19 1.1E-23 151.9 11.6 84 87-173 4-87 (110)
42 2lxi_A RNA-binding protein 10; 99.8 1.5E-19 5.2E-24 148.6 8.6 84 89-174 1-85 (91)
43 2dgp_A Bruno-like 4, RNA bindi 99.8 9.3E-19 3.2E-23 148.0 12.5 92 85-176 9-100 (106)
44 2kn4_A Immunoglobulin G-bindin 99.8 5.1E-19 1.8E-23 160.8 11.5 129 44-175 16-153 (158)
45 2lkz_A RNA-binding protein 5; 99.8 2.9E-19 9.9E-24 148.0 8.3 82 88-171 8-94 (95)
46 2dnh_A Bruno-like 5, RNA bindi 99.8 3.2E-18 1.1E-22 144.4 13.3 90 86-176 12-101 (105)
47 1whw_A Hypothetical protein ri 99.8 3.3E-18 1.1E-22 142.7 13.1 87 86-175 5-91 (99)
48 1x5u_A Splicing factor 3B subu 99.8 4.2E-18 1.4E-22 143.7 13.7 88 85-175 11-98 (105)
49 2dnm_A SRP46 splicing factor; 99.8 3.3E-18 1.1E-22 143.9 12.8 89 85-176 9-97 (103)
50 2x1f_A MRNA 3'-END-processing 99.8 2.5E-18 8.5E-23 142.7 11.9 84 88-174 1-84 (96)
51 2lea_A Serine/arginine-rich sp 99.8 6E-19 2E-23 156.1 8.6 125 43-175 6-130 (135)
52 2dgs_A DAZ-associated protein 99.8 3.7E-18 1.3E-22 142.5 12.8 87 86-176 7-93 (99)
53 2dnz_A Probable RNA-binding pr 99.8 3.8E-18 1.3E-22 141.1 12.6 86 87-175 3-88 (95)
54 3md1_A Nuclear and cytoplasmic 99.8 2.3E-18 7.8E-23 138.7 11.0 80 90-172 2-81 (83)
55 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.9E-18 6.5E-23 140.4 10.5 82 88-172 5-86 (87)
56 2cpz_A CUG triplet repeat RNA- 99.8 2.8E-18 9.7E-23 147.3 12.1 89 85-176 21-109 (115)
57 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.4E-18 8.1E-23 139.2 10.9 81 87-170 5-85 (85)
58 2dgo_A Cytotoxic granule-assoc 99.8 5.8E-18 2E-22 145.3 13.6 90 84-176 10-99 (115)
59 2e5h_A Zinc finger CCHC-type a 99.8 5.3E-18 1.8E-22 140.0 12.8 82 86-170 13-94 (94)
60 2cq0_A Eukaryotic translation 99.8 3.6E-18 1.2E-22 143.6 12.0 88 85-175 11-98 (103)
61 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.4E-18 1.2E-22 143.4 11.8 88 86-176 9-96 (102)
62 2i2y_A Fusion protein consists 99.8 1.2E-18 4.1E-23 157.0 9.2 121 44-173 16-149 (150)
63 2cqc_A Arginine/serine-rich sp 99.8 4E-18 1.4E-22 140.9 11.5 84 85-171 11-94 (95)
64 2cph_A RNA binding motif prote 99.8 7.9E-18 2.7E-22 142.4 13.6 88 85-175 11-100 (107)
65 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-18 3.9E-23 149.8 8.4 104 87-206 6-109 (115)
66 1x4h_A RNA-binding protein 28; 99.8 9.7E-18 3.3E-22 142.9 14.1 89 85-176 11-105 (111)
67 1x5t_A Splicing factor 3B subu 99.8 3.5E-18 1.2E-22 141.6 10.8 86 88-176 4-90 (96)
68 2do4_A Squamous cell carcinoma 99.8 6.9E-18 2.4E-22 141.1 12.7 86 85-174 13-98 (100)
69 1x5s_A Cold-inducible RNA-bind 99.8 5.6E-18 1.9E-22 142.1 11.9 87 86-175 9-95 (102)
70 3p5t_L Cleavage and polyadenyl 99.7 8.3E-19 2.8E-23 143.8 6.3 82 90-174 2-85 (90)
71 2hvz_A Splicing factor, argini 99.7 3.5E-18 1.2E-22 143.1 9.9 92 90-189 1-100 (101)
72 1u6f_A Tcubp1, RNA-binding pro 99.7 7.6E-18 2.6E-22 149.7 12.6 90 84-176 37-126 (139)
73 2la6_A RNA-binding protein FUS 99.7 5.6E-18 1.9E-22 141.4 11.0 83 85-170 9-99 (99)
74 2jrs_A RNA-binding protein 39; 99.7 4.5E-18 1.5E-22 144.5 10.6 86 85-173 22-107 (108)
75 3ns6_A Eukaryotic translation 99.7 1.3E-18 4.5E-23 145.6 7.0 82 87-171 4-92 (100)
76 2kxn_B Transformer-2 protein h 99.7 5.1E-18 1.8E-22 148.9 11.0 86 85-173 42-127 (129)
77 1p27_B RNA-binding protein 8A; 99.7 5.2E-18 1.8E-22 143.4 10.6 85 86-173 20-104 (106)
78 2fy1_A RNA-binding motif prote 99.7 8.5E-18 2.9E-22 144.6 12.1 85 86-174 4-88 (116)
79 2div_A TRNA selenocysteine ass 99.7 4.4E-18 1.5E-22 141.9 9.9 85 86-173 6-95 (99)
80 2cpe_A RNA-binding protein EWS 99.7 1.1E-17 3.7E-22 143.2 12.5 88 85-175 11-106 (113)
81 2cpf_A RNA binding motif prote 99.7 5.9E-18 2E-22 140.9 10.6 87 87-176 3-92 (98)
82 2d9p_A Polyadenylate-binding p 99.7 1.1E-17 3.8E-22 140.6 12.3 87 85-176 11-97 (103)
83 1oo0_B CG8781-PA, drosophila Y 99.7 8.3E-18 2.8E-22 143.2 11.5 86 86-174 23-108 (110)
84 2khc_A Testis-specific RNP-typ 99.7 5.9E-18 2E-22 145.9 10.6 83 85-170 36-118 (118)
85 2dng_A Eukaryotic translation 99.7 1.3E-17 4.6E-22 140.1 12.5 86 86-176 12-97 (103)
86 4fxv_A ELAV-like protein 1; RN 99.7 4.6E-18 1.6E-22 142.0 9.5 80 179-261 18-98 (99)
87 2jwn_A Embryonic polyadenylate 99.7 3E-18 1E-22 149.2 8.0 114 56-174 4-117 (124)
88 2m2b_A RNA-binding protein 10; 99.7 5.2E-18 1.8E-22 149.3 9.6 87 85-175 19-111 (131)
89 1wi8_A EIF-4B, eukaryotic tran 99.7 2.2E-17 7.6E-22 139.0 12.8 85 87-176 13-98 (104)
90 1x4e_A RNA binding motif, sing 99.7 2.6E-18 8.9E-23 139.1 6.8 81 87-170 3-83 (85)
91 2cqi_A Nucleolysin TIAR; RNA r 99.7 4E-17 1.4E-21 137.2 14.2 87 85-176 11-97 (103)
92 3s7r_A Heterogeneous nuclear r 99.7 1.4E-17 4.9E-22 135.3 11.0 81 85-169 7-87 (87)
93 2rs2_A Musashi-1, RNA-binding 99.7 1.2E-17 4.2E-22 142.0 11.0 88 84-175 20-107 (109)
94 2cqd_A RNA-binding region cont 99.7 2.2E-17 7.4E-22 142.0 12.6 85 85-173 13-97 (116)
95 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.4E-18 3.2E-22 153.7 10.9 126 46-174 11-154 (165)
96 4a8x_A RNA-binding protein wit 99.7 1.1E-17 3.9E-22 136.1 10.2 83 88-173 3-86 (88)
97 2dh8_A DAZ-associated protein 99.7 1.5E-17 5E-22 140.3 11.1 88 85-176 12-99 (105)
98 2dhg_A TRNA selenocysteine ass 99.7 9.5E-18 3.2E-22 141.2 9.7 87 85-175 5-93 (104)
99 3n9u_C Cleavage and polyadenyl 99.7 9.9E-18 3.4E-22 151.9 10.4 81 88-171 54-136 (156)
100 3ucg_A Polyadenylate-binding p 99.7 1.5E-17 5E-22 135.8 10.5 80 89-172 6-85 (89)
101 2ywk_A Putative RNA-binding pr 99.7 1.2E-17 4.3E-22 138.0 10.1 83 85-171 12-94 (95)
102 2kt5_A RNA and export factor-b 99.7 4.8E-17 1.6E-21 141.6 14.2 86 85-174 31-116 (124)
103 1sjq_A Polypyrimidine tract-bi 99.7 1.8E-17 6.2E-22 138.9 10.6 83 85-176 12-96 (105)
104 2cq3_A RNA-binding protein 9; 99.7 8.3E-17 2.8E-21 135.2 14.4 86 85-175 11-96 (103)
105 2lea_A Serine/arginine-rich sp 99.7 4E-18 1.4E-22 150.8 6.6 125 133-266 6-131 (135)
106 2cq4_A RNA binding motif prote 99.7 1.6E-17 5.4E-22 142.4 10.0 82 87-172 23-104 (114)
107 2do0_A HnRNP M, heterogeneous 99.7 4.7E-17 1.6E-21 139.3 12.9 86 85-174 11-96 (114)
108 1s79_A Lupus LA protein; RRM, 99.7 1.2E-17 4.2E-22 140.4 8.9 80 87-171 9-88 (103)
109 3ulh_A THO complex subunit 4; 99.7 2.9E-17 9.8E-22 139.0 11.0 81 86-170 26-106 (107)
110 2dgv_A HnRNP M, heterogeneous 99.7 2.7E-17 9.1E-22 135.2 10.5 83 87-174 6-88 (92)
111 2mss_A Protein (musashi1); RNA 99.7 8.4E-18 2.9E-22 132.7 7.1 75 91-169 1-75 (75)
112 3pgw_S U1-70K; protein-RNA com 99.7 6.5E-18 2.2E-22 178.0 8.4 157 105-264 8-184 (437)
113 2cqg_A TDP-43, TAR DNA-binding 99.7 8.4E-17 2.9E-21 135.2 13.5 86 85-175 11-96 (103)
114 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.1E-17 3.9E-22 139.9 8.0 83 85-172 15-98 (100)
115 2cqp_A RNA-binding protein 12; 99.7 1.6E-17 5.4E-22 138.3 8.7 83 87-172 13-95 (98)
116 3ex7_B RNA-binding protein 8A; 99.7 3.5E-17 1.2E-21 142.8 11.2 86 86-174 19-104 (126)
117 2dis_A Unnamed protein product 99.7 4.3E-17 1.5E-21 138.4 11.5 86 87-175 6-95 (109)
118 1p1t_A Cleavage stimulation fa 99.7 1.4E-17 4.6E-22 140.2 8.2 84 88-174 7-90 (104)
119 2dgx_A KIAA0430 protein; RRM d 99.7 6.1E-17 2.1E-21 134.3 11.7 81 88-174 8-92 (96)
120 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.3E-17 1.8E-21 147.2 12.3 87 85-174 35-121 (156)
121 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6.1E-17 2.1E-21 143.7 12.3 82 85-169 59-140 (140)
122 1x4a_A Splicing factor, argini 99.7 1.8E-16 6.2E-21 134.6 14.7 85 85-175 18-102 (109)
123 2cq1_A PTB-like protein L; RRM 99.7 1.3E-16 4.4E-21 133.5 13.2 83 84-175 10-94 (101)
124 2wbr_A GW182, gawky, LD47780P; 99.7 3.7E-17 1.3E-21 131.0 9.5 73 88-169 6-78 (89)
125 3r27_A HnRNP L, heterogeneous 99.7 6.5E-17 2.2E-21 134.2 11.2 82 85-173 17-98 (100)
126 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.2E-17 4.1E-22 132.4 6.3 76 90-169 1-76 (77)
127 1x5o_A RNA binding motif, sing 99.7 1.2E-16 4.1E-21 136.8 13.0 87 85-172 21-112 (114)
128 2err_A Ataxin-2-binding protei 99.7 5.1E-17 1.7E-21 138.1 10.3 84 84-172 24-107 (109)
129 2ek1_A RNA-binding protein 12; 99.7 1.4E-17 4.8E-22 137.7 6.5 80 88-170 14-93 (95)
130 2dgw_A Probable RNA-binding pr 99.7 9.6E-17 3.3E-21 131.6 11.3 82 86-173 7-88 (91)
131 2nlw_A Eukaryotic translation 99.7 6.6E-17 2.3E-21 136.5 10.6 83 85-172 11-100 (105)
132 1fj7_A Nucleolin RBD1, protein 99.7 8.8E-18 3E-22 140.7 5.1 86 85-175 13-98 (101)
133 1x4b_A Heterogeneous nuclear r 99.7 7E-17 2.4E-21 138.8 10.8 85 87-175 25-109 (116)
134 2ki2_A SS-DNA binding protein 99.7 7.7E-18 2.6E-22 137.9 4.4 80 90-173 2-81 (90)
135 3s8s_A Histone-lysine N-methyl 99.7 7.1E-17 2.4E-21 137.5 10.5 84 178-264 4-88 (110)
136 1wg5_A Heterogeneous nuclear r 99.7 1.4E-16 4.7E-21 134.2 12.0 83 86-173 12-95 (104)
137 1x4d_A Matrin 3; structural ge 99.7 8.4E-17 2.9E-21 134.6 10.5 80 86-174 12-94 (102)
138 2ad9_A Polypyrimidine tract-bi 99.7 1.5E-16 5.1E-21 136.6 11.7 82 86-176 28-111 (119)
139 1wex_A Hypothetical protein (r 99.7 1.5E-16 5E-21 133.9 11.4 84 85-175 11-94 (104)
140 2d9p_A Polyadenylate-binding p 99.7 1.7E-16 5.7E-21 133.3 11.7 86 177-266 12-97 (103)
141 2cpy_A RNA-binding protein 12; 99.7 6.5E-17 2.2E-21 138.6 9.3 82 86-172 12-94 (114)
142 2fc9_A NCL protein; structure 99.7 2E-16 7E-21 132.3 12.1 84 85-175 11-94 (101)
143 2lxi_A RNA-binding protein 10; 99.7 2.1E-17 7.2E-22 135.8 5.6 84 180-265 1-86 (91)
144 2do4_A Squamous cell carcinoma 99.7 2E-16 6.8E-21 132.1 11.7 85 177-264 14-98 (100)
145 2dnz_A Probable RNA-binding pr 99.7 1.5E-16 5.1E-21 131.4 10.8 84 178-264 3-87 (95)
146 2fy1_A RNA-binding motif prote 99.7 2E-16 6.7E-21 136.1 11.9 85 178-265 5-89 (116)
147 2krb_A Eukaryotic translation 99.7 3.7E-17 1.3E-21 131.1 6.8 73 89-166 1-80 (81)
148 4f25_A Polyadenylate-binding p 99.7 9.4E-17 3.2E-21 137.9 9.7 83 180-266 5-87 (115)
149 2cpi_A CCR4-NOT transcription 99.7 1.1E-16 3.8E-21 136.5 10.0 83 88-173 14-102 (111)
150 2a3j_A U1 small nuclear ribonu 99.7 1.5E-16 5.1E-21 138.8 10.8 82 86-173 26-111 (127)
151 3pgw_S U1-70K; protein-RNA com 99.7 9.8E-17 3.3E-21 169.0 11.5 84 86-172 99-182 (437)
152 1wez_A HnRNP H', FTP-3, hetero 99.7 5.3E-17 1.8E-21 136.3 7.6 82 86-173 12-93 (102)
153 2dgo_A Cytotoxic granule-assoc 99.7 4.7E-16 1.6E-20 133.3 13.4 87 177-266 12-99 (115)
154 2dnh_A Bruno-like 5, RNA bindi 99.7 2.6E-16 9E-21 132.6 11.6 90 177-266 12-101 (105)
155 1iqt_A AUF1, heterogeneous nuc 99.7 3.9E-17 1.3E-21 128.7 6.0 75 91-169 1-75 (75)
156 2db1_A Heterogeneous nuclear r 99.7 9.9E-17 3.4E-21 138.4 8.8 81 86-171 14-97 (118)
157 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.2E-16 7.4E-21 132.3 10.3 87 177-266 9-96 (102)
158 2hgl_A HNRPF protein, heteroge 99.7 7.2E-17 2.5E-21 142.5 7.7 81 86-171 41-124 (136)
159 2cpz_A CUG triplet repeat RNA- 99.7 3E-16 1E-20 134.5 11.4 86 177-265 22-108 (115)
160 2dgp_A Bruno-like 4, RNA bindi 99.7 1.3E-16 4.6E-21 134.6 8.9 89 177-265 10-99 (106)
161 2cpx_A Hypothetical protein FL 99.7 6.6E-17 2.3E-21 138.6 7.1 88 86-176 22-109 (115)
162 2do0_A HnRNP M, heterogeneous 99.7 7.4E-16 2.5E-20 131.8 13.6 85 177-264 12-96 (114)
163 1u6f_A Tcubp1, RNA-binding pro 99.7 3.6E-16 1.2E-20 138.8 12.0 86 177-265 39-125 (139)
164 2dnq_A RNA-binding protein 4B; 99.7 4.5E-16 1.6E-20 127.3 11.6 79 86-175 5-83 (90)
165 3md1_A Nuclear and cytoplasmic 99.7 2.5E-16 8.7E-21 126.6 10.0 80 181-263 2-82 (83)
166 2fc8_A NCL protein; structure 99.7 2.9E-16 9.8E-21 131.6 10.6 85 85-175 11-95 (102)
167 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-16 4.6E-21 145.9 9.4 127 136-266 11-156 (165)
168 1x5t_A Splicing factor 3B subu 99.7 1.7E-16 5.8E-21 131.4 9.1 85 178-265 3-89 (96)
169 3q2s_C Cleavage and polyadenyl 99.7 9.8E-17 3.3E-21 154.7 8.7 81 88-171 67-149 (229)
170 2dnn_A RNA-binding protein 12; 99.7 1.9E-16 6.3E-21 134.4 9.4 78 88-171 15-92 (109)
171 2dgs_A DAZ-associated protein 99.7 3.1E-16 1.1E-20 130.7 10.6 86 177-266 7-93 (99)
172 1why_A Hypothetical protein ri 99.7 3.9E-16 1.3E-20 129.6 11.1 81 87-174 15-95 (97)
173 2lkz_A RNA-binding protein 5; 99.7 5.3E-17 1.8E-21 134.3 5.8 80 179-261 8-94 (95)
174 2cq0_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 131.4 10.9 86 177-265 12-98 (103)
175 2lmi_A GRSF-1, G-rich sequence 99.7 6.5E-17 2.2E-21 137.0 6.4 82 85-171 7-91 (107)
176 1nu4_A U1A RNA binding domain; 99.7 1.7E-16 6E-21 131.6 8.8 83 86-174 5-91 (97)
177 1wel_A RNA-binding protein 12; 99.7 8.6E-17 2.9E-21 140.0 7.2 82 86-171 22-103 (124)
178 2dhg_A TRNA selenocysteine ass 99.7 2.6E-16 8.9E-21 132.3 9.9 86 177-265 6-93 (104)
179 1x4g_A Nucleolysin TIAR; struc 99.7 5.4E-16 1.9E-20 131.7 11.9 80 87-175 23-102 (109)
180 2cpf_A RNA binding motif prote 99.7 4.3E-16 1.5E-20 129.5 11.0 84 178-264 3-90 (98)
181 2jvr_A Nucleolar protein 3; RN 99.7 2.6E-16 8.9E-21 133.9 9.7 78 88-172 27-105 (111)
182 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.2E-16 7.5E-21 128.1 8.9 81 179-262 5-86 (87)
183 1whw_A Hypothetical protein ri 99.7 3.2E-16 1.1E-20 130.5 10.1 85 178-265 6-91 (99)
184 1x5u_A Splicing factor 3B subu 99.7 4E-16 1.4E-20 131.4 10.7 86 177-265 12-98 (105)
185 1x4c_A Splicing factor, argini 99.7 8.5E-16 2.9E-20 130.3 12.7 81 87-174 13-95 (108)
186 2cq3_A RNA-binding protein 9; 99.7 7.5E-16 2.6E-20 129.3 12.3 86 177-266 12-97 (103)
187 2cpj_A Non-POU domain-containi 99.7 7.1E-16 2.4E-20 128.5 11.8 81 85-174 11-91 (99)
188 2dnm_A SRP46 splicing factor; 99.7 2.8E-16 9.7E-21 131.9 9.4 86 177-265 10-96 (103)
189 2la4_A Nuclear and cytoplasmic 99.7 2.6E-16 9E-21 131.6 9.0 75 88-171 26-100 (101)
190 2cqd_A RNA-binding region cont 99.6 9E-16 3.1E-20 131.8 12.4 83 177-263 14-97 (116)
191 2x1f_A MRNA 3'-END-processing 99.6 3.1E-16 1.1E-20 130.0 9.1 81 180-263 2-83 (96)
192 2cph_A RNA binding motif prote 99.6 6.2E-16 2.1E-20 130.7 11.1 86 177-265 12-100 (107)
193 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.1E-16 1.8E-20 140.6 11.3 87 177-266 36-123 (156)
194 1x4h_A RNA-binding protein 28; 99.6 7.2E-16 2.5E-20 131.2 11.4 87 177-266 12-105 (111)
195 2lcw_A RNA-binding protein FUS 99.5 1.1E-17 3.9E-22 143.8 0.0 87 86-175 4-98 (116)
196 1fjc_A Nucleolin RBD2, protein 99.6 2.1E-16 7.3E-21 130.8 7.7 83 84-174 11-93 (96)
197 2jvo_A Nucleolar protein 3; nu 99.6 5.1E-16 1.7E-20 131.7 10.1 80 84-174 26-105 (108)
198 2e5j_A Methenyltetrahydrofolat 99.6 5.4E-16 1.8E-20 128.8 10.0 81 85-173 15-95 (97)
199 1x5s_A Cold-inducible RNA-bind 99.6 2.6E-16 9E-21 131.8 8.1 86 177-265 9-95 (102)
200 3p5t_L Cleavage and polyadenyl 99.6 1.1E-16 3.9E-21 131.0 5.7 80 181-263 2-84 (90)
201 2cqi_A Nucleolysin TIAR; RNA r 99.6 9.1E-16 3.1E-20 128.8 11.3 86 177-266 12-97 (103)
202 1wf1_A RNA-binding protein RAL 99.6 1.4E-15 4.7E-20 129.4 12.5 78 87-175 25-103 (110)
203 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.9E-16 1.3E-20 126.1 8.5 80 178-260 5-85 (85)
204 2dng_A Eukaryotic translation 99.6 1E-15 3.6E-20 128.5 11.4 84 177-265 12-96 (103)
205 2ytc_A PRE-mRNA-splicing facto 99.6 7.7E-16 2.6E-20 124.4 10.2 76 86-170 9-85 (85)
206 2xnq_A Nuclear polyadenylated 99.6 1.1E-15 3.8E-20 127.0 11.4 77 85-172 18-95 (97)
207 2kxn_B Transformer-2 protein h 99.6 6.1E-16 2.1E-20 135.6 10.3 85 177-264 43-128 (129)
208 2e5h_A Zinc finger CCHC-type a 99.6 8.8E-16 3E-20 126.5 10.7 81 177-260 13-94 (94)
209 1x4f_A Matrin 3; structural ge 99.6 7E-16 2.4E-20 131.0 10.2 81 86-175 22-105 (112)
210 2cqc_A Arginine/serine-rich sp 99.6 7.9E-16 2.7E-20 127.0 10.4 82 177-261 12-94 (95)
211 2dgt_A RNA-binding protein 30; 99.6 2E-15 6.8E-20 124.0 12.6 80 85-175 6-85 (92)
212 2jrs_A RNA-binding protein 39; 99.6 6.3E-16 2.1E-20 131.1 9.7 84 177-263 23-107 (108)
213 1wi8_A EIF-4B, eukaryotic tran 99.6 7.9E-16 2.7E-20 129.5 10.2 85 177-266 12-98 (104)
214 2xs2_A Deleted in azoospermia- 99.6 1.8E-16 6.3E-21 132.8 6.0 81 87-173 7-87 (102)
215 1p27_B RNA-binding protein 8A; 99.6 5E-16 1.7E-20 131.1 8.7 84 178-264 21-105 (106)
216 2dnp_A RNA-binding protein 14; 99.6 1.7E-15 5.8E-20 123.9 11.6 79 86-175 6-84 (90)
217 4a8x_A RNA-binding protein wit 99.6 6.1E-16 2.1E-20 125.7 8.9 83 179-264 3-87 (88)
218 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.9E-21 141.7 4.7 123 132-263 2-124 (139)
219 1sjr_A Polypyrimidine tract-bi 99.6 1.3E-15 4.6E-20 137.3 11.7 80 89-173 46-125 (164)
220 2cpe_A RNA-binding protein EWS 99.6 8.1E-16 2.8E-20 131.4 9.7 86 177-265 12-106 (113)
221 3r27_A HnRNP L, heterogeneous 99.6 5.3E-16 1.8E-20 128.7 8.1 81 177-263 18-98 (100)
222 2la6_A RNA-binding protein FUS 99.6 1.1E-15 3.7E-20 127.4 10.1 81 177-260 10-99 (99)
223 2div_A TRNA selenocysteine ass 99.6 9E-16 3.1E-20 127.8 9.6 84 177-263 6-95 (99)
224 2cpd_A Apobec-1 stimulating pr 99.6 4.6E-15 1.6E-19 123.6 13.9 80 85-175 11-92 (99)
225 2dgv_A HnRNP M, heterogeneous 99.6 9.1E-16 3.1E-20 125.9 9.3 83 178-264 6-88 (92)
226 2hgm_A HNRPF protein, heteroge 99.6 6.7E-16 2.3E-20 134.2 8.9 80 86-171 39-120 (126)
227 1sjq_A Polypyrimidine tract-bi 99.6 4E-16 1.4E-20 130.7 7.2 82 177-266 13-96 (105)
228 2hgn_A Heterogeneous nuclear r 99.6 2E-16 6.8E-21 140.1 5.4 82 86-173 43-124 (139)
229 2ywk_A Putative RNA-binding pr 99.6 6.4E-16 2.2E-20 127.6 8.1 81 178-261 14-94 (95)
230 2cq1_A PTB-like protein L; RRM 99.6 2E-15 6.7E-20 126.3 11.1 82 177-266 12-95 (101)
231 1whx_A Hypothetical protein ri 99.6 6.6E-16 2.3E-20 131.7 8.3 76 88-172 9-84 (111)
232 2wbr_A GW182, gawky, LD47780P; 99.6 4.3E-16 1.5E-20 124.9 6.4 73 180-260 7-79 (89)
233 2cqh_A IGF-II mRNA-binding pro 99.6 1E-15 3.6E-20 125.9 8.9 80 86-175 5-86 (93)
234 2dh8_A DAZ-associated protein 99.6 1.4E-15 4.8E-20 128.1 9.9 85 177-265 13-98 (105)
235 1oo0_B CG8781-PA, drosophila Y 99.6 7.8E-16 2.7E-20 130.8 8.3 84 178-264 24-108 (110)
236 2f3j_A RNA and export factor b 99.6 1.1E-15 3.8E-20 141.4 10.0 83 86-172 85-167 (177)
237 2dgu_A Heterogeneous nuclear r 99.6 4.5E-15 1.5E-19 124.6 12.7 78 87-175 9-86 (103)
238 3ulh_A THO complex subunit 4; 99.6 1.4E-15 4.8E-20 128.5 9.6 81 177-260 26-106 (107)
239 2dgx_A KIAA0430 protein; RRM d 99.6 1.1E-15 3.9E-20 126.6 8.8 81 178-263 7-91 (96)
240 2dha_A FLJ20171 protein; RRM d 99.6 4.4E-16 1.5E-20 135.0 6.5 78 88-170 22-103 (123)
241 2j8a_A Histone-lysine N-methyl 99.6 7.9E-16 2.7E-20 131.5 7.9 79 90-171 3-95 (136)
242 1x4a_A Splicing factor, argini 99.6 2.8E-15 9.7E-20 127.2 11.4 83 177-264 19-101 (109)
243 1x5p_A Negative elongation fac 99.6 6E-15 2.1E-19 122.4 13.1 80 85-175 11-90 (97)
244 2dgw_A Probable RNA-binding pr 99.6 3E-15 1E-19 122.6 11.1 81 178-263 8-88 (91)
245 3ucg_A Polyadenylate-binding p 99.6 1.6E-15 5.4E-20 123.6 9.3 80 180-263 6-86 (89)
246 2cpi_A CCR4-NOT transcription 99.6 2.2E-15 7.6E-20 128.4 10.5 84 177-263 12-102 (111)
247 2dgu_A Heterogeneous nuclear r 99.6 2.9E-15 1E-19 125.8 11.0 81 177-267 8-88 (103)
248 2cq2_A Hypothetical protein LO 99.6 1.8E-15 6.2E-20 128.5 9.7 80 87-172 23-106 (114)
249 2dnl_A Cytoplasmic polyadenyla 99.6 1.4E-15 4.9E-20 130.2 9.1 65 87-152 6-73 (114)
250 2fc9_A NCL protein; structure 99.6 2.5E-15 8.7E-20 125.6 10.5 82 177-264 12-93 (101)
251 2ad9_A Polypyrimidine tract-bi 99.6 1.8E-15 6.2E-20 129.9 9.6 82 177-266 28-111 (119)
252 2kvi_A Nuclear polyadenylated 99.6 1.2E-15 4.3E-20 126.3 8.4 79 85-174 6-85 (96)
253 2khc_A Testis-specific RNP-typ 99.6 1.1E-15 3.8E-20 131.6 8.4 81 177-260 37-118 (118)
254 2cqg_A TDP-43, TAR DNA-binding 99.6 6.1E-15 2.1E-19 123.7 12.7 84 177-265 12-96 (103)
255 1s79_A Lupus LA protein; RRM, 99.6 9.9E-16 3.4E-20 128.7 7.8 80 178-261 9-88 (103)
256 3ns6_A Eukaryotic translation 99.6 2.3E-16 7.7E-21 131.9 3.8 80 180-262 6-93 (100)
257 1x4d_A Matrin 3; structural ge 99.6 9.8E-16 3.3E-20 128.1 7.5 79 177-263 12-93 (102)
258 1x4c_A Splicing factor, argini 99.6 3.4E-15 1.2E-19 126.6 10.8 80 178-266 13-97 (108)
259 3ex7_B RNA-binding protein 8A; 99.6 9.1E-16 3.1E-20 133.7 7.5 86 177-265 19-105 (126)
260 1p1t_A Cleavage stimulation fa 99.6 1.6E-15 5.3E-20 127.5 8.6 83 180-265 8-91 (104)
261 3d2w_A TAR DNA-binding protein 99.6 2.8E-15 9.7E-20 122.4 9.8 78 87-174 9-86 (89)
262 2err_A Ataxin-2-binding protei 99.6 1.3E-15 4.4E-20 129.4 8.1 83 176-262 25-107 (109)
263 3q2s_C Cleavage and polyadenyl 99.6 5.3E-16 1.8E-20 149.6 6.3 81 179-262 67-150 (229)
264 3egn_A RNA-binding protein 40; 99.6 3.9E-16 1.3E-20 139.3 4.9 87 86-175 42-133 (143)
265 1x4b_A Heterogeneous nuclear r 99.6 2.2E-15 7.6E-20 129.3 9.5 83 179-265 26-109 (116)
266 1wex_A Hypothetical protein (r 99.6 3.1E-15 1E-19 125.8 10.1 81 177-265 12-94 (104)
267 2dis_A Unnamed protein product 99.6 1.9E-15 6.5E-20 128.2 8.7 86 178-266 6-96 (109)
268 2m2b_A RNA-binding protein 10; 99.6 9.8E-16 3.3E-20 134.6 7.0 85 177-265 20-111 (131)
269 1wez_A HnRNP H', FTP-3, hetero 99.6 1.8E-15 6.1E-20 126.9 8.3 82 177-263 12-93 (102)
270 1wg1_A KIAA1579 protein, homol 99.6 2.2E-15 7.5E-20 122.7 8.6 75 88-172 4-78 (88)
271 2kt5_A RNA and export factor-b 99.6 3.2E-15 1.1E-19 130.0 10.1 84 177-263 32-115 (124)
272 3n9u_C Cleavage and polyadenyl 99.6 2.2E-15 7.5E-20 136.4 9.3 81 179-262 54-137 (156)
273 2rs2_A Musashi-1, RNA-binding 99.6 3.2E-15 1.1E-19 126.9 9.7 84 177-264 22-106 (109)
274 2jwn_A Embryonic polyadenylate 99.6 4E-15 1.4E-19 129.3 10.5 81 180-264 36-117 (124)
275 2hgl_A HNRPF protein, heteroge 99.6 1.7E-15 5.7E-20 133.7 7.9 121 132-262 2-125 (136)
276 2e5g_A U6 snRNA-specific termi 99.6 5.9E-15 2E-19 121.7 10.7 79 87-174 6-84 (94)
277 3zzy_A Polypyrimidine tract-bi 99.6 8E-15 2.7E-19 127.5 11.9 79 89-173 28-107 (130)
278 2e44_A Insulin-like growth fac 99.6 4.3E-15 1.5E-19 122.9 9.8 79 87-172 13-92 (96)
279 2dnq_A RNA-binding protein 4B; 99.6 3.9E-15 1.3E-19 121.7 9.4 78 178-265 6-83 (90)
280 2cqp_A RNA-binding protein 12; 99.6 1.6E-15 5.5E-20 126.0 7.1 82 178-262 13-95 (98)
281 1why_A Hypothetical protein ri 99.6 4.4E-15 1.5E-19 123.2 9.3 79 178-264 15-95 (97)
282 1wg5_A Heterogeneous nuclear r 99.6 3.8E-15 1.3E-19 125.3 9.0 83 177-263 12-95 (104)
283 3s7r_A Heterogeneous nuclear r 99.6 5.6E-15 1.9E-19 119.8 9.7 79 177-259 8-87 (87)
284 2ek1_A RNA-binding protein 12; 99.6 1.5E-15 5E-20 125.5 6.2 80 179-261 14-94 (95)
285 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1E-15 3.5E-20 127.9 5.3 82 177-263 16-99 (100)
286 2fc8_A NCL protein; structure 99.6 1.1E-14 3.7E-19 121.9 11.4 83 177-265 12-95 (102)
287 2cpj_A Non-POU domain-containi 99.6 5.5E-15 1.9E-19 123.1 9.6 79 177-263 12-90 (99)
288 1x5o_A RNA binding motif, sing 99.6 6.2E-15 2.1E-19 126.1 10.1 86 177-262 22-112 (114)
289 2mss_A Protein (musashi1); RNA 99.6 1.5E-15 5E-20 119.7 5.7 74 182-259 1-75 (75)
290 2cq4_A RNA binding motif prote 99.6 1E-15 3.5E-20 131.0 4.8 80 180-263 25-105 (114)
291 1x4f_A Matrin 3; structural ge 99.6 2.7E-15 9.1E-20 127.4 6.9 80 177-264 22-104 (112)
292 1wf1_A RNA-binding protein RAL 99.6 5.2E-15 1.8E-19 125.8 8.8 94 161-264 7-102 (110)
293 2dgt_A RNA-binding protein 30; 99.6 1.1E-14 3.9E-19 119.4 10.5 78 177-264 7-84 (92)
294 2cpy_A RNA-binding protein 12; 99.6 9.2E-16 3.1E-20 131.4 4.0 83 177-263 12-95 (114)
295 1fjc_A Nucleolin RBD2, protein 99.6 3.9E-15 1.3E-19 123.2 7.6 82 177-265 13-94 (96)
296 2ytc_A PRE-mRNA-splicing facto 99.6 9.8E-15 3.3E-19 117.8 9.6 76 177-260 9-85 (85)
297 1x4g_A Nucleolysin TIAR; struc 99.6 6.7E-15 2.3E-19 124.9 8.9 79 178-264 23-101 (109)
298 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.1E-15 7.3E-20 119.3 5.5 75 181-259 1-76 (77)
299 2nlw_A Eukaryotic translation 99.6 4.8E-15 1.6E-19 125.0 7.9 81 178-262 13-100 (105)
300 2cpx_A Hypothetical protein FL 99.6 2.2E-15 7.6E-20 129.0 5.9 87 177-266 22-109 (115)
301 2a3j_A U1 small nuclear ribonu 99.6 4.4E-15 1.5E-19 129.5 7.8 83 177-264 26-112 (127)
302 2ki2_A SS-DNA binding protein 99.6 7.9E-16 2.7E-20 125.8 2.9 79 181-263 2-81 (90)
303 3beg_B Splicing factor, argini 99.6 5.8E-15 2E-19 126.6 8.4 75 88-172 15-94 (115)
304 1fj7_A Nucleolin RBD1, protein 99.6 9.2E-16 3.2E-20 128.3 3.2 85 177-266 14-99 (101)
305 2hzc_A Splicing factor U2AF 65 99.6 8.7E-15 3E-19 118.6 8.8 72 87-168 4-86 (87)
306 2dnp_A RNA-binding protein 14; 99.6 1.1E-14 3.8E-19 118.9 9.5 78 177-264 6-83 (90)
307 2db1_A Heterogeneous nuclear r 99.6 5E-15 1.7E-19 127.7 7.7 81 178-262 15-98 (118)
308 1x4e_A RNA binding motif, sing 99.6 1.2E-15 4.1E-20 123.3 3.5 80 178-260 3-83 (85)
309 2cpd_A Apobec-1 stimulating pr 99.6 2.5E-14 8.4E-19 119.1 11.6 78 177-264 12-91 (99)
310 2la4_A Nuclear and cytoplasmic 99.6 3.7E-15 1.3E-19 124.6 6.5 76 179-262 26-101 (101)
311 2jvo_A Nucleolar protein 3; nu 99.5 9.5E-15 3.3E-19 123.8 8.9 79 177-265 28-106 (108)
312 1wf0_A TDP-43, TAR DNA-binding 99.5 7E-15 2.4E-19 119.6 7.7 78 88-175 4-81 (88)
313 2cqh_A IGF-II mRNA-binding pro 99.5 6.3E-15 2.2E-19 121.2 7.5 79 178-265 6-86 (93)
314 2diu_A KIAA0430 protein; struc 99.5 2.7E-14 9.3E-19 115.5 10.9 76 88-176 7-88 (96)
315 2krb_A Eukaryotic translation 99.5 2.3E-15 7.9E-20 120.6 4.6 72 181-256 2-80 (81)
316 2jvr_A Nucleolar protein 3; RN 99.5 4.2E-15 1.5E-19 126.3 6.4 89 163-262 16-105 (111)
317 2pe8_A Splicing factor 45; RRM 99.5 2.2E-14 7.4E-19 120.8 10.7 82 87-171 6-93 (105)
318 2hvz_A Splicing factor, argini 99.5 6.5E-15 2.2E-19 123.1 7.3 77 181-264 1-77 (101)
319 2e5i_A Heterogeneous nuclear r 99.5 4.7E-14 1.6E-18 122.0 12.9 77 90-173 26-103 (124)
320 1x5p_A Negative elongation fac 99.5 3.7E-14 1.3E-18 117.6 11.7 79 177-265 12-90 (97)
321 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.2E-14 4.1E-19 128.8 9.2 80 177-259 60-140 (140)
322 2e5j_A Methenyltetrahydrofolat 99.5 1.2E-14 4.2E-19 120.5 8.4 80 178-264 17-96 (97)
323 2xnq_A Nuclear polyadenylated 99.5 2.3E-14 8E-19 118.9 9.5 76 177-262 19-95 (97)
324 2dnn_A RNA-binding protein 12; 99.5 1.4E-14 4.7E-19 122.8 8.2 78 180-262 16-93 (109)
325 2voo_A Lupus LA protein; RNA-b 99.5 9.9E-15 3.4E-19 136.9 8.0 80 88-172 108-187 (193)
326 1nu4_A U1A RNA binding domain; 99.5 7.5E-15 2.6E-19 121.6 6.4 82 178-264 6-91 (97)
327 2lcw_A RNA-binding protein FUS 99.3 7.2E-16 2.5E-20 132.4 0.0 84 178-264 5-97 (116)
328 1sjr_A Polypyrimidine tract-bi 99.5 2.2E-14 7.7E-19 129.3 9.8 80 180-263 46-125 (164)
329 3zzy_A Polypyrimidine tract-bi 99.5 3.2E-14 1.1E-18 123.7 9.8 78 181-263 29-107 (130)
330 2bz2_A Negative elongation fac 99.5 2.9E-14 1E-18 123.4 9.4 79 85-174 35-113 (121)
331 1wel_A RNA-binding protein 12; 99.5 7.4E-15 2.5E-19 127.7 5.7 81 178-262 23-104 (124)
332 2kvi_A Nuclear polyadenylated 99.5 1.5E-14 5.3E-19 119.7 7.2 78 177-264 7-85 (96)
333 1whx_A Hypothetical protein ri 99.5 1.5E-14 5.1E-19 123.2 7.3 75 180-262 10-84 (111)
334 2lmi_A GRSF-1, G-rich sequence 99.5 5.6E-15 1.9E-19 125.0 4.5 82 177-262 8-92 (107)
335 2dha_A FLJ20171 protein; RRM d 99.5 1.4E-14 4.9E-19 125.4 5.9 80 179-262 22-105 (123)
336 1iqt_A AUF1, heterogeneous nuc 99.5 7.2E-15 2.5E-19 115.6 3.3 74 182-259 1-75 (75)
337 3lqv_A PRE-mRNA branch site pr 99.5 4.3E-14 1.5E-18 121.0 8.4 81 178-263 6-86 (115)
338 1wg1_A KIAA1579 protein, homol 99.5 5.7E-14 1.9E-18 114.3 8.1 75 179-262 4-78 (88)
339 2cq2_A Hypothetical protein LO 99.5 2.9E-14 9.9E-19 121.1 6.6 81 177-262 22-106 (114)
340 3egn_A RNA-binding protein 40; 99.5 3.3E-14 1.1E-18 126.7 7.1 86 177-265 42-133 (143)
341 2e5g_A U6 snRNA-specific termi 99.5 9.3E-14 3.2E-18 114.4 9.3 77 178-263 6-83 (94)
342 2xs2_A Deleted in azoospermia- 99.5 1.9E-14 6.5E-19 120.4 5.2 80 179-263 8-87 (102)
343 2f3j_A RNA and export factor b 99.5 3.5E-14 1.2E-18 131.2 7.4 82 178-262 86-167 (177)
344 3beg_B Splicing factor, argini 99.5 5.1E-14 1.7E-18 120.7 7.5 76 179-263 15-95 (115)
345 3d2w_A TAR DNA-binding protein 99.5 6.3E-14 2.1E-18 114.4 7.5 79 177-264 8-86 (89)
346 2j8a_A Histone-lysine N-methyl 99.5 7.6E-14 2.6E-18 119.3 7.2 78 181-261 3-95 (136)
347 2e44_A Insulin-like growth fac 99.5 1.4E-13 4.7E-18 113.8 8.6 80 178-263 13-93 (96)
348 2e5i_A Heterogeneous nuclear r 99.5 1.5E-13 5E-18 118.9 9.1 76 182-263 27-103 (124)
349 2hgm_A HNRPF protein, heteroge 99.5 3.7E-14 1.3E-18 123.2 5.3 80 178-262 40-121 (126)
350 1wf0_A TDP-43, TAR DNA-binding 99.4 7.9E-14 2.7E-18 113.4 5.7 78 179-265 4-81 (88)
351 2voo_A Lupus LA protein; RNA-b 99.4 5.3E-13 1.8E-17 125.1 12.0 79 180-262 109-187 (193)
352 3u1l_A PRE-mRNA-splicing facto 99.4 2.5E-13 8.5E-18 130.6 9.8 82 86-173 131-230 (240)
353 2pe8_A Splicing factor 45; RRM 99.4 3.6E-13 1.2E-17 113.3 9.6 82 178-262 6-94 (105)
354 3v4m_A Splicing factor U2AF 65 99.4 4.1E-13 1.4E-17 113.0 9.5 82 87-171 3-96 (105)
355 2diu_A KIAA0430 protein; struc 99.4 1.9E-13 6.6E-18 110.5 6.8 74 179-264 7-86 (96)
356 2dit_A HIV TAT specific factor 99.4 1.5E-12 5.1E-17 110.9 12.2 83 85-174 11-104 (112)
357 2bz2_A Negative elongation fac 99.4 3E-13 1E-17 116.9 7.7 77 178-264 37-113 (121)
358 2dnl_A Cytoplasmic polyadenyla 99.4 3E-13 1E-17 115.7 6.4 77 178-260 6-86 (114)
359 3tht_A Alkylated DNA repair pr 99.4 1E-12 3.6E-17 132.9 10.4 80 85-170 14-97 (345)
360 1jmt_A Splicing factor U2AF 35 99.4 1.9E-13 6.5E-18 114.9 4.1 72 94-169 20-103 (104)
361 2hzc_A Splicing factor U2AF 65 99.4 6.2E-13 2.1E-17 107.5 6.2 71 179-258 5-86 (87)
362 3ue2_A Poly(U)-binding-splicin 99.4 1.3E-12 4.3E-17 112.2 8.3 81 88-171 19-108 (118)
363 3u1l_A PRE-mRNA-splicing facto 99.3 1.1E-12 3.6E-17 126.2 7.0 82 177-263 131-230 (240)
364 2dit_A HIV TAT specific factor 99.3 6.2E-12 2.1E-16 107.0 10.7 81 177-263 12-103 (112)
365 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.3E-11 4.4E-16 102.6 12.0 67 99-175 27-93 (100)
366 1e0l_A Formin binding protein; 99.3 5.3E-13 1.8E-17 89.2 2.6 34 432-465 4-37 (37)
367 1jmt_A Splicing factor U2AF 35 99.3 1.1E-12 3.9E-17 110.1 4.9 72 185-259 20-103 (104)
368 3v4m_A Splicing factor U2AF 65 99.3 3.7E-12 1.3E-16 107.1 7.7 81 179-262 4-97 (105)
369 3ue2_A Poly(U)-binding-splicin 99.3 9.2E-12 3.1E-16 106.8 8.6 80 179-261 19-108 (118)
370 2ysi_A Transcription elongatio 99.2 2.2E-12 7.4E-17 87.6 2.7 33 432-464 8-40 (40)
371 3tht_A Alkylated DNA repair pr 99.2 1.3E-11 4.5E-16 124.9 8.6 79 177-260 15-97 (345)
372 2d9o_A DNAJ (HSP40) homolog, s 99.2 4.2E-11 1.4E-15 99.5 9.8 83 161-264 10-92 (100)
373 2dk1_A WW domain-binding prote 99.2 5.6E-12 1.9E-16 89.5 2.2 37 432-468 5-41 (50)
374 3s6e_A RNA-binding protein 39; 99.2 9.1E-11 3.1E-15 99.9 9.7 77 87-170 5-91 (114)
375 2dk7_A Transcription elongatio 99.2 7.3E-12 2.5E-16 94.4 2.5 35 434-468 20-54 (73)
376 3s6e_A RNA-binding protein 39; 99.1 1.2E-10 4.1E-15 99.1 7.5 77 179-261 6-92 (114)
377 1ywi_A Formin-binding protein 99.1 2.3E-11 7.9E-16 83.0 1.8 31 433-463 11-41 (41)
378 1owx_A Lupus LA protein, SS-B, 99.0 2.1E-09 7.2E-14 91.7 9.8 76 87-170 16-94 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.8 8.2E-09 2.8E-13 82.7 8.3 74 87-172 5-86 (91)
380 2dnr_A Synaptojanin-1; RRM dom 98.8 1.1E-08 3.8E-13 81.9 7.0 74 178-262 5-86 (91)
381 1owx_A Lupus LA protein, SS-B, 98.8 1.3E-08 4.3E-13 86.9 7.8 76 177-260 15-94 (121)
382 3dxb_A Thioredoxin N-terminall 98.7 5.3E-08 1.8E-12 92.9 12.0 68 191-261 140-212 (222)
383 3dxb_A Thioredoxin N-terminall 98.7 2.5E-08 8.5E-13 95.2 8.4 79 89-170 124-211 (222)
384 2l5f_A PRE-mRNA-processing fac 98.6 1.8E-08 6.1E-13 82.0 4.2 37 432-468 12-48 (92)
385 2jxw_A WW domain-binding prote 98.6 7.4E-09 2.5E-13 81.0 1.7 35 432-466 3-37 (75)
386 1ufw_A Synaptojanin 2; RNP dom 98.6 3.7E-08 1.3E-12 79.3 5.5 73 86-170 12-93 (95)
387 1e0n_A Hypothetical protein; Y 98.6 1.6E-08 5.6E-13 61.9 2.0 26 435-461 2-27 (27)
388 1e0m_A Wwprototype; SH3 protot 98.5 4E-08 1.4E-12 65.6 3.1 31 433-463 5-35 (37)
389 1ufw_A Synaptojanin 2; RNP dom 98.5 5E-08 1.7E-12 78.5 4.1 74 177-261 12-94 (95)
390 2ysh_A GAS-7, growth-arrest-sp 98.5 5.8E-08 2E-12 66.0 3.6 30 433-462 9-38 (40)
391 2l5f_A PRE-mRNA-processing fac 98.5 2.7E-08 9.3E-13 80.9 2.0 37 433-469 54-90 (92)
392 2jxw_A WW domain-binding prote 98.5 5.6E-08 1.9E-12 76.0 3.2 33 431-463 43-75 (75)
393 1ymz_A CC45; artificial protei 98.5 4.1E-08 1.4E-12 67.9 1.8 32 434-465 11-42 (43)
394 1o6w_A PRP40, PRE-mRNA process 98.4 1.9E-07 6.4E-12 73.0 4.0 34 434-467 2-35 (75)
395 1wr7_A NEDD4-2; all-beta, liga 98.4 2.3E-07 7.8E-12 63.3 3.6 30 433-462 10-39 (41)
396 1wr3_A Ubiquitin-protein ligas 98.4 2.2E-07 7.4E-12 61.6 3.1 30 433-462 6-35 (36)
397 2jx8_A Hpcif1, phosphorylated 98.3 1.3E-07 4.3E-12 67.9 1.8 30 434-463 13-43 (52)
398 2jv4_A Peptidyl-prolyl CIS/tra 98.3 3.8E-07 1.3E-11 65.9 4.2 32 433-464 9-41 (54)
399 1wr4_A Ubiquitin-protein ligas 98.3 4.2E-07 1.4E-11 60.2 3.1 30 433-462 6-35 (36)
400 2kyk_A E3 ubiquitin-protein li 98.3 5.6E-07 1.9E-11 60.7 3.6 30 433-462 8-37 (39)
401 2kpz_A E3 ubiquitin-protein li 98.2 5.6E-07 1.9E-11 63.9 2.9 31 433-463 14-44 (49)
402 2law_A Yorkie homolog; YAP, SM 98.2 6.4E-07 2.2E-11 60.0 2.8 30 433-462 8-37 (38)
403 2dmv_A Itchy homolog E3 ubiqui 98.2 8.3E-07 2.8E-11 61.2 3.2 31 433-463 9-39 (43)
404 2ysg_A Syntaxin-binding protei 98.1 1.6E-06 5.4E-11 58.7 3.7 30 433-462 9-38 (40)
405 2ez5_W Dnedd4, E3 ubiquitin-pr 98.1 1.9E-06 6.6E-11 60.1 3.9 31 433-463 12-42 (46)
406 2l9w_A U4/U6 snRNA-associated- 98.1 1.7E-05 5.8E-10 65.1 9.7 73 88-169 20-97 (117)
407 2djy_A SMAD ubiquitination reg 98.1 2.2E-06 7.6E-11 58.6 3.4 31 433-463 9-39 (42)
408 2l9w_A U4/U6 snRNA-associated- 98.1 1E-05 3.5E-10 66.3 7.7 71 180-258 21-96 (117)
409 2ysf_A E3 ubiquitin-protein li 98.1 2.8E-06 9.6E-11 57.4 3.6 30 433-462 9-38 (40)
410 2l4j_A YES-associated protein 98.0 5E-06 1.7E-10 58.0 4.5 30 433-462 13-42 (46)
411 1i5h_W Rnedd4, ubiquitin ligas 98.0 4.6E-06 1.6E-10 59.3 3.8 31 433-463 13-43 (50)
412 2ysc_A Amyloid beta A4 precurs 98.0 3.7E-06 1.3E-10 56.3 2.9 29 433-462 10-38 (39)
413 2ysb_A Salvador homolog 1 prot 97.9 4E-06 1.4E-10 59.2 2.8 31 433-463 13-43 (49)
414 1o6w_A PRP40, PRE-mRNA process 97.9 4.7E-06 1.6E-10 65.0 2.4 30 434-463 43-72 (75)
415 2ho2_A Fe65 protein, amyloid b 97.8 1E-05 3.4E-10 53.8 2.9 29 433-462 5-33 (38)
416 2zaj_A Membrane-associated gua 97.8 1.3E-05 4.6E-10 56.5 3.7 30 433-462 15-44 (49)
417 2dhx_A Poly (ADP-ribose) polym 97.8 0.00043 1.5E-08 56.3 12.3 89 87-193 6-99 (104)
418 2kxq_A E3 ubiquitin-protein li 97.7 1.3E-05 4.4E-10 64.8 2.9 33 433-465 11-43 (90)
419 2ysd_A Membrane-associated gua 97.7 3.7E-05 1.3E-09 56.0 4.4 31 433-463 16-46 (57)
420 1uw4_A UPF3X; nonsense mediate 97.6 0.00037 1.3E-08 56.0 9.9 73 90-162 2-76 (91)
421 2jmf_A E3 ubiquitin-protein li 97.6 3.3E-05 1.1E-09 55.4 3.2 31 433-463 20-50 (53)
422 1tk7_A CG4244-PB; WW domain, n 97.6 3.5E-05 1.2E-09 61.9 3.7 32 433-464 14-45 (88)
423 2yse_A Membrane-associated gua 97.6 5E-05 1.7E-09 55.8 3.9 31 433-463 15-45 (60)
424 2dwv_A Salvador homolog 1 prot 97.5 3.1E-05 1.1E-09 54.7 1.9 31 433-463 15-45 (49)
425 2e45_A Fe65 protein, amyloid b 97.5 3.2E-05 1.1E-09 54.8 1.7 29 433-462 21-49 (55)
426 2kxq_A E3 ubiquitin-protein li 97.4 7.6E-05 2.6E-09 60.2 3.4 32 432-463 56-87 (90)
427 1tk7_A CG4244-PB; WW domain, n 97.4 6.9E-05 2.3E-09 60.2 2.8 30 433-462 58-87 (88)
428 1jmq_A YAP65, 65 kDa YES-assoc 97.4 0.00011 3.8E-09 51.2 3.3 31 433-463 10-40 (46)
429 1wmv_A WWOX, WW domain contain 97.3 0.00014 4.9E-09 52.3 3.2 31 433-463 13-43 (54)
430 1wey_A Calcipressin 1; structu 97.3 0.00045 1.5E-08 56.5 6.4 75 179-261 4-83 (104)
431 1wey_A Calcipressin 1; structu 97.1 0.0013 4.4E-08 53.7 7.1 74 89-171 5-83 (104)
432 1uw4_A UPF3X; nonsense mediate 97.0 0.0055 1.9E-07 49.1 10.2 80 181-260 2-86 (91)
433 1whv_A Poly(A)-specific ribonu 97.0 0.0028 9.7E-08 50.9 8.0 55 89-152 16-70 (100)
434 3ctr_A Poly(A)-specific ribonu 96.8 0.0019 6.4E-08 52.1 5.6 53 91-152 8-60 (101)
435 2l08_A Regulator of nonsense t 96.7 0.0035 1.2E-07 50.6 6.6 76 88-163 8-85 (97)
436 3tc5_A Peptidyl-prolyl CIS-tra 96.5 0.0011 3.9E-08 59.6 2.7 32 433-464 11-43 (166)
437 2dhx_A Poly (ADP-ribose) polym 96.4 0.032 1.1E-06 45.3 10.5 76 179-265 7-87 (104)
438 1wwh_A Nucleoporin 35, nucleop 96.2 0.012 4.2E-07 49.3 7.2 72 88-169 23-94 (119)
439 1whv_A Poly(A)-specific ribonu 95.8 0.018 6E-07 46.3 6.0 55 180-242 16-70 (100)
440 2l08_A Regulator of nonsense t 95.7 0.024 8.2E-07 45.7 6.6 81 180-260 9-94 (97)
441 3l4h_A E3 ubiquitin-protein li 95.3 0.008 2.7E-07 49.4 2.7 30 433-462 74-103 (109)
442 1wwh_A Nucleoporin 35, nucleop 95.1 0.052 1.8E-06 45.5 7.0 71 180-260 24-95 (119)
443 3pq1_A Poly(A) RNA polymerase; 94.8 0.013 4.5E-07 61.1 3.3 55 89-149 53-107 (464)
444 3ctr_A Poly(A)-specific ribonu 94.8 0.021 7.1E-07 46.0 3.7 54 181-242 7-60 (101)
445 3p3d_A Nucleoporin 53; structu 93.0 0.14 4.8E-06 43.5 5.5 75 89-168 7-95 (132)
446 3pq1_A Poly(A) RNA polymerase; 92.6 0.037 1.3E-06 57.7 1.8 55 180-239 53-107 (464)
447 1yw5_A Peptidyl prolyl CIS/tra 91.5 0.1 3.6E-06 47.2 3.2 35 433-467 9-44 (177)
448 1eg3_A Dystrophin; EF-hand lik 90.2 0.19 6.4E-06 48.4 3.7 34 433-466 13-46 (261)
449 3p3d_A Nucleoporin 53; structu 89.6 0.44 1.5E-05 40.5 5.1 74 182-260 9-97 (132)
450 3iot_A Maltose-binding protein 88.4 0.13 4.3E-06 53.6 1.2 11 102-112 128-138 (449)
451 3d45_A Poly(A)-specific ribonu 86.8 1.1 3.9E-05 47.3 7.4 56 89-153 440-495 (507)
452 3olm_A E3 ubiquitin-protein li 86.6 0.3 1E-05 50.6 2.8 31 433-463 10-40 (429)
453 3iot_A Maltose-binding protein 84.5 0.26 8.9E-06 51.1 1.1 10 230-239 272-281 (449)
454 3d45_A Poly(A)-specific ribonu 59.4 10 0.00036 39.8 5.7 55 181-243 441-495 (507)
455 3le4_A Microprocessor complex 54.2 8.4 0.00029 28.8 2.7 32 432-463 29-60 (79)
456 3lpe_A Putative transcription 38.0 1.4E+02 0.0048 23.1 8.5 35 115-154 39-73 (92)
457 2g0c_A ATP-dependent RNA helic 37.7 81 0.0028 23.2 6.2 67 91-169 2-74 (76)
458 2f06_A Conserved hypothetical 31.6 2.2E+02 0.0075 23.5 11.1 111 104-246 21-135 (144)
459 4eyt_A Telomerase associated p 29.9 1.9E+02 0.0066 22.3 8.8 57 87-151 10-66 (129)
460 4eyt_A Telomerase associated p 29.3 2E+02 0.0067 22.3 6.9 56 179-241 11-66 (129)
461 2v94_A RPS24, 30S ribosomal pr 26.1 1E+02 0.0034 24.9 5.1 48 99-147 37-89 (107)
462 1ywx_A 30S ribosomal protein S 25.4 1.1E+02 0.0037 24.5 5.1 47 99-146 28-79 (102)
463 2g1d_A 30S ribosomal protein S 24.1 37 0.0013 27.1 2.1 47 99-146 29-80 (98)
464 3j21_T 50S ribosomal protein L 22.8 1.5E+02 0.0052 22.8 5.4 54 92-148 25-80 (86)
465 4e8u_A Putative uncharacterize 22.0 99 0.0034 27.2 4.6 98 101-210 33-135 (172)
466 2lfv_A Protein DAMX; cell divi 26.0 21 0.00072 28.9 0.0 53 191-245 33-88 (106)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.2e-38 Score=317.00 Aligned_cols=238 Identities=18% Similarity=0.174 Sum_probs=213.9
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~~ 82 (537)
|+|+..+|++.|.+.|+.|| |..+...+.+ +..+++|...++|.+|++.+||..+.+..+++.|..
T Consensus 28 ~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~--------g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~----- 93 (284)
T 3smz_A 28 RGLPGDVTNQEVHDLLSDYE-LKYCFVDKYK--------GTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP----- 93 (284)
T ss_dssp ECCCTTCCHHHHHHHTTTSC-EEEEEEETTT--------TEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-----
T ss_pred eCCCCCCCHHHHHHHHHHcC-CEEEEEecCC--------CEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-----
Confidence 78999999999999999999 8555554433 457889999999999999999999988777777632
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 83 ~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
..++|||+|||.++++++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 94 -----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~ 165 (284)
T 3smz_A 94 -----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL---GPR 165 (284)
T ss_dssp -----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTE
T ss_pred -----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe---CCc
Confidence 347999999999999999999999999999999999998999999999999999999999999999987 678
Q ss_pred eEEEeeccCCCCCC-CCCCCCcccccCCcCC-CHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHH
Q 009356 163 SIKVRFADGEREHP-VAPPDKLYVGCLSKQT-SKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISG 240 (537)
Q Consensus 163 ~l~v~~a~~~~~~~-~~~~~~l~V~nl~~~~-te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~ 240 (537)
.|+|.++....... ....++|||+|||.++ ++++|+++|+.||.|..+.|+.+.+|.++|+|||+|.+.++|.+|++.
T Consensus 166 ~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 245 (284)
T 3smz_A 166 TLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQ 245 (284)
T ss_dssp ECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHH
Confidence 99999998765433 3457889999999995 999999999999999999999999999999999999999999999999
Q ss_pred cCCceEecCCCceEEEEEccCCCCC
Q 009356 241 LNGTFTMRGSDQPLVVRIADPKKPR 265 (537)
Q Consensus 241 lng~~~~~g~g~~l~V~~a~~~~~~ 265 (537)
|||..+ +|+.|+|.|+.++..+
T Consensus 246 l~g~~~---~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 246 ADGLSL---GGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HTTCEE---TTEECEEEECCSSSCH
T ss_pred hCCCcc---CCeEEEEEEecCCCcc
Confidence 999998 8999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.5e-37 Score=309.56 Aligned_cols=234 Identities=16% Similarity=0.246 Sum_probs=199.4
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~ 80 (537)
|+|+..+|++.|.+.|+.||+| +.+..+..+ + .+..++.|...++|.+|++ +||..+.+..+++.+.
T Consensus 47 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~---~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~---- 115 (292)
T 2ghp_A 47 KNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK---N---FRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL---- 115 (292)
T ss_dssp EEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS---S---SEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC----
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC---C---cEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC----
Confidence 6899999999999999999999 555555443 1 1457789999999999995 8999997777777663
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecC
Q 009356 81 DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG 159 (537)
Q Consensus 81 ~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g 159 (537)
..++|||+|||.++++++|+++|+.|| .|..|+|++++ .|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 116 -------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--- 184 (292)
T 2ghp_A 116 -------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKI--- 184 (292)
T ss_dssp -------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE---
T ss_pred -------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe---
Confidence 358999999999999999999999999 99999999997 489999999999999999999999999988
Q ss_pred CceeEEEeeccCCCCCC-----CCCCCCcccccCCcC-CCHHHHHHHHcCCCCeeEEEEEeecC--CCcceEEEEEEcCH
Q 009356 160 EQASIKVRFADGEREHP-----VAPPDKLYVGCLSKQ-TSKKEIEEVFSPYGHIEDIFIVRDEL--KQSRGCAFVQFSHR 231 (537)
Q Consensus 160 ~~~~l~v~~a~~~~~~~-----~~~~~~l~V~nl~~~-~te~~L~~~F~~~G~I~~v~i~~d~~--g~~rg~afV~F~~~ 231 (537)
.++.|+|.++....... ....++|||+|||.. +++++|+++|+.||.|..|.|+++.. |.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 66899999987654432 345689999999999 99999999999999999999999865 99999999999999
Q ss_pred HHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009356 232 EMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 232 ~~A~~Ai~~lng~~~~~g~g~~l~V~~a~~~ 262 (537)
++|.+|+ .|||..+ +|+.|.|.|+.++
T Consensus 265 ~~A~~A~-~l~g~~~---~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLL---GNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEE---TTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEE---CCcEEEEEEecCC
Confidence 9999999 9999998 8999999999876
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6.6e-36 Score=286.68 Aligned_cols=173 Identities=25% Similarity=0.389 Sum_probs=157.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
.+.++|||||||+++||++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.+++..+ .++.|++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---~g~~i~~ 89 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGKPVRI 89 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc---CCccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999987 6789999
Q ss_pred eeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceE
Q 009356 167 RFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFT 246 (537)
Q Consensus 167 ~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~ 246 (537)
.++...........++|||+||+.++++++|+++|++||.|+.|+|++|.. .++|||||+|.+.++|.+||+.|||..+
T Consensus 90 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 90 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp EECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 998766555455677899999999999999999999999999999999853 4799999999999999999999999998
Q ss_pred ecCCCceEEEEEccCCCCCC
Q 009356 247 MRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 247 ~~g~g~~l~V~~a~~~~~~~ 266 (537)
+|+.|+|.++.++..+.
T Consensus 169 ---~g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 169 ---NDRKVFVGRFKSRKERE 185 (213)
T ss_dssp ---TTEECEEEECCCHHHHH
T ss_pred ---CCEEEEEEEcCCCcccc
Confidence 89999999998765433
No 4
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.1e-34 Score=265.07 Aligned_cols=172 Identities=38% Similarity=0.655 Sum_probs=158.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCC--CccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTG--QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg--~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
+.++|||+|||.++|+++|+++|++||.|.+|+|++++.+| +++|||||+|.+.++|++|++.|+|..+..+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35899999999999999999999999999999999998777 8999999999999999999999999988888788999
Q ss_pred EeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCce
Q 009356 166 VRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTF 245 (537)
Q Consensus 166 v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~ 245 (537)
+.++...... ....++|||+|||.++++++|+++|++||.|..+.++++.+|.++|||||+|.+.++|.+|++.|||..
T Consensus 82 ~~~~~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKNN-AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCCS-CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Eccccccccc-cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 9988765443 345678999999999999999999999999999999999889999999999999999999999999998
Q ss_pred EecCCCceEEEEEcc
Q 009356 246 TMRGSDQPLVVRIAD 260 (537)
Q Consensus 246 ~~~g~g~~l~V~~a~ 260 (537)
++.|++++|+|.||+
T Consensus 161 ~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 161 TMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCTTCSSCCEEEECC
T ss_pred ccCCCCCCeEEEecC
Confidence 876668999999985
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=257.19 Aligned_cols=164 Identities=24% Similarity=0.416 Sum_probs=155.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009356 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
++|||+|||.++|+++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++|++.|+|..+ .++.|+|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---CCCeeEEEEc
Confidence 689999999999999999999999999999999997 688999999999999999999999999988 6799999999
Q ss_pred cCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEec
Q 009356 170 DGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMR 248 (537)
Q Consensus 170 ~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~ 248 (537)
...........++|||+|||..+++++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 77 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 154 (166)
T 3md3_A 77 FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-- 154 (166)
T ss_dssp CCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--
Confidence 8887777778889999999999999999999999999999999998 6789999999999999999999999999998
Q ss_pred CCCceEEEEEcc
Q 009356 249 GSDQPLVVRIAD 260 (537)
Q Consensus 249 g~g~~l~V~~a~ 260 (537)
+|+.|+|.|++
T Consensus 155 -~g~~i~v~~a~ 165 (166)
T 3md3_A 155 -NGRPLRINWAA 165 (166)
T ss_dssp -TTEECEEEESC
T ss_pred -CCcEEEEEecC
Confidence 89999999986
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=7.8e-33 Score=254.08 Aligned_cols=166 Identities=34% Similarity=0.554 Sum_probs=153.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
++++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---RNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe---CCcEEEEE
Confidence 468999999999999999999999999999999999998999999999999999999999999999988 67899999
Q ss_pred eccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceE
Q 009356 168 FADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFT 246 (537)
Q Consensus 168 ~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~rg~afV~F~~~~~A~~Ai~~lng~~~ 246 (537)
++..... ....++|||+|||..+++++|+++|++||.|..+.++++. ++.++|||||+|.+.++|.+|++.|||..+
T Consensus 79 ~~~~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 79 YARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp ECCCCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ecCCCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 9876543 3456899999999999999999999999999999999985 888999999999999999999999999986
Q ss_pred ecCCCceEEEEEc
Q 009356 247 MRGSDQPLVVRIA 259 (537)
Q Consensus 247 ~~g~g~~l~V~~a 259 (537)
.|++++|+|.||
T Consensus 157 -~g~~~~l~V~~A 168 (168)
T 1b7f_A 157 -EGGSQPLSVRLA 168 (168)
T ss_dssp -TTCSSCCEEEEC
T ss_pred -cCCCeEEEEEeC
Confidence 334499999986
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.4e-33 Score=261.38 Aligned_cols=174 Identities=24% Similarity=0.397 Sum_probs=149.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+....++|||+|||.++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++||+. ++..+ .++.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~---~g~~l 84 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV---DGRVV 84 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE---TTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE---CCEEe
Confidence 445679999999999999999999999999999999999999999999999999999999999955 77776 66889
Q ss_pred EEeeccCCCCCC----CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHH
Q 009356 165 KVRFADGEREHP----VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAIS 239 (537)
Q Consensus 165 ~v~~a~~~~~~~----~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~ 239 (537)
+|.++....... ....++|||+|||.++++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|++
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 999886553322 234589999999999999999999999999999999999 478899999999999999999998
Q ss_pred HcCCceEecCCCceEEEEEccCCCCCC
Q 009356 240 GLNGTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 240 ~lng~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
. +|..+ +|+.|.|.|+.++....
T Consensus 165 ~-~~~~~---~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 165 Q-KYHTV---NGHNCEVRKALSKQEMA 187 (196)
T ss_dssp C-SCCEE---TTEECEEEECC------
T ss_pred h-CCcEE---CCEEEEEEecCChhHhc
Confidence 6 78887 89999999999876544
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.8e-32 Score=250.99 Aligned_cols=163 Identities=37% Similarity=0.567 Sum_probs=150.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
+++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---CCceEEEEe
Confidence 58999999999999999999999999999999999998999999999999999999999999999988 678999999
Q ss_pred ccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceEe
Q 009356 169 ADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTM 247 (537)
Q Consensus 169 a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~ 247 (537)
+..... ....++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 79 ~~~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~- 155 (167)
T 1fxl_A 79 ARPSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP- 155 (167)
T ss_dssp CCCCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC-
T ss_pred cCCCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc-
Confidence 876543 3356789999999999999999999999999999999984 788999999999999999999999999987
Q ss_pred cCCCc--eEEEEEc
Q 009356 248 RGSDQ--PLVVRIA 259 (537)
Q Consensus 248 ~g~g~--~l~V~~a 259 (537)
+|+ +|+|.||
T Consensus 156 --~g~~~~i~v~~A 167 (167)
T 1fxl_A 156 --SGATEPITVKFA 167 (167)
T ss_dssp --TTCSSCCEEEEC
T ss_pred --CCCccceEEEeC
Confidence 564 5899886
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2e-32 Score=262.08 Aligned_cols=170 Identities=23% Similarity=0.373 Sum_probs=153.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||.++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|+|..+ .++.|+|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML---GGRNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC---C-CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee---CCeeEEEe
Confidence 458999999999999999999999999999999999998999999999999999999999999999987 67889998
Q ss_pred eccCCCCCC---------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHH
Q 009356 168 FADGEREHP---------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAA 237 (537)
Q Consensus 168 ~a~~~~~~~---------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~A 237 (537)
++....... ....++|||+||+.++++++|+++|++||.|..|.|+++ .+|.++|||||+|.+.++|.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 876554221 245689999999999999999999999999999999999 5788999999999999999999
Q ss_pred HHHcCCceEecCCCceEEEEEccCCC
Q 009356 238 ISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 238 i~~lng~~~~~g~g~~l~V~~a~~~~ 263 (537)
++.|||..+ +|+.|+|.|+.++.
T Consensus 184 ~~~l~g~~~---~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 184 VSSMNLFDL---GGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHTTCBC---SSSBCEEEECSSCS
T ss_pred HHHccCCEe---CCcEEEEEEecCCC
Confidence 999999998 89999999998763
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=1.4e-32 Score=252.21 Aligned_cols=164 Identities=24% Similarity=0.421 Sum_probs=146.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
++++|||+|||.++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++. +..+ .++.|.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~---~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL---DGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE---TTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc---CCeEcccc
Confidence 468999999999999999999999999999999999998999999999999999999999974 3444 45777777
Q ss_pred eccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceE
Q 009356 168 FADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFT 246 (537)
Q Consensus 168 ~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~ 246 (537)
++..... ....++|||+|||.++++++|+++|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+|++ ++|..+
T Consensus 77 ~~~~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~ 153 (167)
T 2cjk_A 77 RAIPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF 153 (167)
T ss_dssp ECCCHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS
T ss_pred cccchhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe
Confidence 7654322 224568999999999999999999999999999999998 579999999999999999999998 888877
Q ss_pred ecCCCceEEEEEccCC
Q 009356 247 MRGSDQPLVVRIADPK 262 (537)
Q Consensus 247 ~~g~g~~l~V~~a~~~ 262 (537)
+|+.|.|.|+.++
T Consensus 154 ---~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 ---KDRKIEIKRAEPR 166 (167)
T ss_dssp ---SSSCEEEEECCCC
T ss_pred ---CCeEEEEeecCCC
Confidence 8999999999876
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=6.6e-32 Score=250.01 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=150.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+....++|||+|||.++++++|+++|+.||.|.. .++++..+|+++|||||+|.+.++|++|| .|+|..+ .++.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l 83 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV---FGNEI 83 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---TTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe---CCeEE
Confidence 4456799999999999999999999999998776 45566668999999999999999999999 6999988 67999
Q ss_pred EEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCc
Q 009356 165 KVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGT 244 (537)
Q Consensus 165 ~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~ 244 (537)
+|.++...........++|||+|||.++++++|+++|+.||.|..+ +.++.++|||||+|.+.++|.+|++.|||.
T Consensus 84 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 84 KLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp EEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred EEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 9999988777667778899999999999999999999999988766 667889999999999999999999999999
Q ss_pred eEecCCCceEEEEEccCC
Q 009356 245 FTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 245 ~~~~g~g~~l~V~~a~~~ 262 (537)
.+ +|+.|+|.|+.++
T Consensus 160 ~~---~g~~i~v~~a~~k 174 (175)
T 1fje_B 160 EI---DGRSVSLYYTGEK 174 (175)
T ss_dssp EE---TTEEEEEEECSSC
T ss_pred EE---CCeEEEEEecCCC
Confidence 98 8999999999875
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=4.3e-30 Score=256.51 Aligned_cols=163 Identities=18% Similarity=0.414 Sum_probs=144.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCC
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIR----PLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~ 160 (537)
+..+.++|||+|||.++++++|+ ++|+.||.|.+|+|++ +|++||||||+|.+.++|++||+.|+|..+ .
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~ 78 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF---Y 78 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee---C
Confidence 44567999999999999999976 8999999999999886 788999999999999999999999999887 5
Q ss_pred ceeEEEeeccCCCCC-----------------------------------------------------------------
Q 009356 161 QASIKVRFADGEREH----------------------------------------------------------------- 175 (537)
Q Consensus 161 ~~~l~v~~a~~~~~~----------------------------------------------------------------- 175 (537)
++.|+|.+++.+...
T Consensus 79 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
T 3pgw_A 79 DKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMP 158 (282)
T ss_pred CcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCC
Confidence 689999988654320
Q ss_pred --------------------------------------------CCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEE
Q 009356 176 --------------------------------------------PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211 (537)
Q Consensus 176 --------------------------------------------~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~ 211 (537)
.....++|||+||+.++++++|+++|++||.|..|+
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~ 238 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE
Confidence 111346799999999999999999999999999999
Q ss_pred EEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCC-CceEEEEEcc
Q 009356 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGS-DQPLVVRIAD 260 (537)
Q Consensus 212 i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~-g~~l~V~~a~ 260 (537)
|+.+ .+|||||+|.+.++|.+|++.|||..+ + |+.|+|.|++
T Consensus 239 ~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPG----RHDIAFVEFDNEVQAGAARDALQGFKI---TQNNAMKISFAK 281 (282)
T ss_pred EecC----CCcEEEEEeCCHHHHHHHHHHcCCcEe---CCCCEEEEEEec
Confidence 9975 368999999999999999999999998 6 8999999986
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.9e-30 Score=245.67 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=139.2
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 88 IPAKLYVAPVP-RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 88 ~~~~LfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
++++|||+||| .++++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++||+.|||..+ .++.|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM---FGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE---CCceEEE
Confidence 46899999999 899999999999999999999998863 69999999999999999999999988 6789999
Q ss_pred eeccCCCCC-----------------------------------CCCCCCCcccccCCcCCCHHHHHHHHcCCCCe--eE
Q 009356 167 RFADGEREH-----------------------------------PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI--ED 209 (537)
Q Consensus 167 ~~a~~~~~~-----------------------------------~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I--~~ 209 (537)
.+++..... ...+.++|||+|||+++++++|+++|++||.| ..
T Consensus 75 ~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~ 154 (205)
T 3tyt_A 75 CVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTS 154 (205)
T ss_dssp EECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSE
T ss_pred EEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEE
Confidence 988643210 01234579999999999999999999999999 89
Q ss_pred EEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecC-CCceEEEEEc
Q 009356 210 IFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRG-SDQPLVVRIA 259 (537)
Q Consensus 210 v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g-~g~~l~V~~a 259 (537)
++++.+. +..+|+|||+|.+.++|.+||..|||..+..- +..++.|+|+
T Consensus 155 v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9998875 55679999999999999999999999987211 2236777765
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1e-29 Score=234.26 Aligned_cols=158 Identities=27% Similarity=0.516 Sum_probs=143.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEH----G-------NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
+.++|||+|||.++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|++|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 777777654 4699999999999999999 9999987
Q ss_pred ecCCceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHH
Q 009356 157 FPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMAL 235 (537)
Q Consensus 157 ~~g~~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~ 235 (537)
.++.|+|.++..... ....++|||+|||.++++++|+++|++||.|..+.++++ .+|.++|||||+|.+.++|.
T Consensus 76 ---~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 76 ---QGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp ---TTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHH
T ss_pred ---cCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 678999998765433 345789999999999999999999999999999999999 58999999999999999999
Q ss_pred HHHHHcCCceEecCCCceEEEEEcc
Q 009356 236 AAISGLNGTFTMRGSDQPLVVRIAD 260 (537)
Q Consensus 236 ~Ai~~lng~~~~~g~g~~l~V~~a~ 260 (537)
+|++.|||..+ +|+.|.|.||.
T Consensus 151 ~A~~~l~g~~~---~g~~l~V~~As 172 (172)
T 2g4b_A 151 QAIAGLNGMQL---GDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHTTCEE---TTEECEEEECC
T ss_pred HHHHHcCCCEE---CCeEEEEEeCC
Confidence 99999999998 89999999973
No 15
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.1e-29 Score=250.93 Aligned_cols=163 Identities=28% Similarity=0.471 Sum_probs=148.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++|+++|+++|+.||.|.+|+|.++ +|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i---~g~~l 88 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL---KSRPL 88 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE---CCcee
Confidence 4456689999999999999999999999999999999654 58999999999999999999999988 67899
Q ss_pred EEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHc-CC
Q 009356 165 KVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL-NG 243 (537)
Q Consensus 165 ~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~l-ng 243 (537)
+|.++.. .++|||+||+..+++++|+++|+.||.|..|.|+.+.+|.++|||||+|.+.++|.+|++.| ++
T Consensus 89 ~v~~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 89 RIRFATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp EEEECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred Eeeeccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 9999864 46899999999999999999999999999999999999999999999999999999999999 56
Q ss_pred ceEecCCCceEEEEEccCCCC
Q 009356 244 TFTMRGSDQPLVVRIADPKKP 264 (537)
Q Consensus 244 ~~~~~g~g~~l~V~~a~~~~~ 264 (537)
..++.+.+++|.|.++.....
T Consensus 161 ~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp CEESSSSCCBCEEEECCCEES
T ss_pred eEEecCCCceEEEeeccccCc
Confidence 666556799999999987543
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.4e-29 Score=238.79 Aligned_cols=164 Identities=27% Similarity=0.510 Sum_probs=144.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEH----G-------NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
..++|||+|||.++++++|+++|+.| | .|.++++ ++++|||||+|.+.++|++|| .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5666654 456799999999999999999 9999987
Q ss_pred ecCCceeEEEeeccCCCCCC------------------CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cC
Q 009356 157 FPGEQASIKVRFADGEREHP------------------VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-EL 217 (537)
Q Consensus 157 ~~g~~~~l~v~~a~~~~~~~------------------~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~ 217 (537)
.++.|+|.++....... ....++|||+||+..+++++|+++|++||.|..|.++.+ .+
T Consensus 76 ---~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 76 ---QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp ---TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred ---cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 67899999987542211 145689999999999999999999999999999999999 48
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCCC
Q 009356 218 KQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKP 264 (537)
Q Consensus 218 g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~~~~~ 264 (537)
|.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.|+.++..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEE---TTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEECCCCCC
Confidence 89999999999999999999999999998 899999999987653
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=3.1e-29 Score=242.96 Aligned_cols=161 Identities=20% Similarity=0.282 Sum_probs=143.3
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 87 GIPAKLYVAPVPR-TATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 87 ~~~~~LfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
.++++|||+|||. ++++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l~ 103 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL---HGKPIR 103 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC---SSSBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence 4568999999999 99999999999999999999999986 78999999999999999999999987 568899
Q ss_pred EeeccCCCCC---------------------------------CCCCCCCcccccCCcCCCHHHHHHHHcCCC-CeeEEE
Q 009356 166 VRFADGEREH---------------------------------PVAPPDKLYVGCLSKQTSKKEIEEVFSPYG-HIEDIF 211 (537)
Q Consensus 166 v~~a~~~~~~---------------------------------~~~~~~~l~V~nl~~~~te~~L~~~F~~~G-~I~~v~ 211 (537)
|.++...... ...+.++|||+||+.++++++|+++|++|| .|..|.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 9888643100 012357899999999999999999999999 999999
Q ss_pred EEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCC-CceEEEEEccCC
Q 009356 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGS-DQPLVVRIADPK 262 (537)
Q Consensus 212 i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~-g~~l~V~~a~~~ 262 (537)
|+.+ .+|||||+|.+.++|.+|++.|||..+ + |+.|+|.|++++
T Consensus 184 i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~---~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK----DRKMALIQMGSVEEAVQALIDLHNHDL---GENHHLRVSFSKST 228 (229)
T ss_dssp ECSS----STTCEEEEESSHHHHHHHHHHHTTCBS---SSSCBCEEEECSSC
T ss_pred EEEC----CCcEEEEEECCHHHHHHHHHHHCCCcc---CCCCeEEEEEecCC
Confidence 9764 578999999999999999999999987 6 899999999864
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2.6e-29 Score=237.52 Aligned_cols=159 Identities=20% Similarity=0.294 Sum_probs=142.2
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 89 PAKLYVAPVPR-TATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 89 ~~~LfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
+++|||+|||. ++++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL---HGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC---SSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee---cCeEEEEE
Confidence 58999999999 99999999999999999999999985 78999999999999999999999987 56889998
Q ss_pred eccCCCCC---------------------------------CCCCCCCcccccCCcCCCHHHHHHHHcCCC-CeeEEEEE
Q 009356 168 FADGEREH---------------------------------PVAPPDKLYVGCLSKQTSKKEIEEVFSPYG-HIEDIFIV 213 (537)
Q Consensus 168 ~a~~~~~~---------------------------------~~~~~~~l~V~nl~~~~te~~L~~~F~~~G-~I~~v~i~ 213 (537)
++...... ...+.++|||+||+..+++++|+++|++|| .|..|.|+
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 88643110 012367899999999999999999999999 99999998
Q ss_pred eecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCC-CceEEEEEccCC
Q 009356 214 RDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGS-DQPLVVRIADPK 262 (537)
Q Consensus 214 ~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~-g~~l~V~~a~~~ 262 (537)
.+ .+|+|||+|.+.++|.+|++.|||..+ + |+.|+|.|++++
T Consensus 155 ~~----~~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QK----DRKMALIQMGSVEEAVQALIDLHNHDL---GENHHLRVSFSKST 197 (198)
T ss_dssp ST----TSSCEEEECSSHHHHHHHHHHHTSSCC---SSCCSCCEEEECCC
T ss_pred eC----CCcEEEEEeCCHHHHHHHHHHhcCCcc---CCCCeEEEEeeccc
Confidence 75 479999999999999999999999998 6 899999999864
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=6.7e-28 Score=240.89 Aligned_cols=155 Identities=23% Similarity=0.368 Sum_probs=143.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
.+++|||+|||.++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~i~v~ 90 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL---RERELSVQ 90 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee---CCeEEEEE
Confidence 468999999999999999999999999 999988 55689999999999999999999999987 67899998
Q ss_pred eccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceE
Q 009356 168 FADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFT 246 (537)
Q Consensus 168 ~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~ 246 (537)
++. ..++|||+|||.++++++|+++|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+|++.|+|..+
T Consensus 91 ~~~--------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 91 LQP--------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp ECC--------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ecC--------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 854 3468999999999999999999999999999999998 5889999999999999999999999999998
Q ss_pred ecCCCceEEEEEccCCC
Q 009356 247 MRGSDQPLVVRIADPKK 263 (537)
Q Consensus 247 ~~g~g~~l~V~~a~~~~ 263 (537)
+|+.|.|.++.++.
T Consensus 163 ---~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 163 ---GPRTLYVHWTDAGQ 176 (284)
T ss_dssp ---TTEECEEEECCGGG
T ss_pred ---CCcEEEEEECCCCC
Confidence 89999999998754
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=4e-28 Score=243.48 Aligned_cols=162 Identities=17% Similarity=0.275 Sum_probs=139.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++|+++|+++|+.||.|.+|+|++++. + ++|||||+|.+.++|++|| .|+|..+ .++.|
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~-~~~~~~~---~g~~i 110 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAI-TKTHKVV---GQNEI 110 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHH-TTTTCEE---TTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHH-HhCCcEe---CCcEE
Confidence 345679999999999999999999999999999999999863 3 5899999999999999999 5999887 67899
Q ss_pred EEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCC-CeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCC
Q 009356 165 KVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYG-HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243 (537)
Q Consensus 165 ~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G-~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng 243 (537)
+|.++ ..++|||+|||..+++++|+++|+.|| .|..|.|+.+..|.++|||||+|.+.++|.+|++.|+|
T Consensus 111 ~v~~~---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 111 IVSHL---------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EEEEC---------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred EEEEC---------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 99886 357899999999999999999999999 99999999997788999999999999999999999999
Q ss_pred ceEecCCCceEEEEEccCCCC
Q 009356 244 TFTMRGSDQPLVVRIADPKKP 264 (537)
Q Consensus 244 ~~~~~g~g~~l~V~~a~~~~~ 264 (537)
..+ +|+.|.|.++.++..
T Consensus 182 ~~~---~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 182 LKI---EGYTLVTKVSNPLEK 199 (292)
T ss_dssp CEE---TTEECEEEECCCC--
T ss_pred CEe---CCcEEEEEECCCCcc
Confidence 998 889999999987643
No 21
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-24 Score=197.28 Aligned_cols=160 Identities=18% Similarity=0.243 Sum_probs=136.8
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~~ 82 (537)
|+|+..+|++.|.+.|+.||+|..+...+.+. .. ..+...++|...++|.+|++.+||..+.+..+++.+..+...
T Consensus 6 ~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~~-~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~- 81 (166)
T 3md3_A 6 GNLDKAITEDILKQYFQVGGPIANIKIMIDKN--NK-NVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ- 81 (166)
T ss_dssp EEEETTCCHHHHHHHHGGGSCEEEEEEECCCC---C-CEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC-
T ss_pred CCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC--CC-CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC-
Confidence 68999999999999999999994444433321 11 114577899999999999999999999888788877654433
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 83 ~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
......++|||+|||.++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 82 -~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 157 (166)
T 3md3_A 82 -SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGR 157 (166)
T ss_dssp -CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTE
T ss_pred -CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc---CCc
Confidence 3455678999999999999999999999999999999999988999999999999999999999999999987 679
Q ss_pred eEEEeecc
Q 009356 163 SIKVRFAD 170 (537)
Q Consensus 163 ~l~v~~a~ 170 (537)
.|+|.|++
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 99999985
No 22
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.89 E-value=2.3e-24 Score=206.25 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=132.8
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~ 80 (537)
|+|+..+|++.|.++|++||+| |+++.|+.. ....+..++.|...++|.+|++.+||..+.+..+++.+.....
T Consensus 21 gnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t----g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 21 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT----RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred eCCCCCCCHHHHHHHHHhhCCEEEEEEecccCC----CCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 7999999999999999999999 555555442 1111346788999999999999999999988777777654432
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCC
Q 009356 81 DHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160 (537)
Q Consensus 81 ~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~ 160 (537)
.. .....++|||+|||.++|+++|+++|+.||.|++|+|++|. +.++|||||+|.+.++|++||+.|||..| .
T Consensus 97 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~---~ 169 (213)
T 4f02_A 97 SL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL---N 169 (213)
T ss_dssp HH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred cc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEE---C
Confidence 21 22345799999999999999999999999999999999984 55899999999999999999999999988 6
Q ss_pred ceeEEEeeccCC
Q 009356 161 QASIKVRFADGE 172 (537)
Q Consensus 161 ~~~l~v~~a~~~ 172 (537)
++.|+|.++..+
T Consensus 170 g~~i~V~~a~~~ 181 (213)
T 4f02_A 170 DRKVFVGRFKSR 181 (213)
T ss_dssp TEECEEEECCCH
T ss_pred CEEEEEEEcCCC
Confidence 799999998764
No 23
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.89 E-value=3.9e-24 Score=197.07 Aligned_cols=164 Identities=20% Similarity=0.254 Sum_probs=130.5
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCC-cccccCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFI-GRKRGFNHPA 79 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~-~~~~~~~~~~ 79 (537)
|+|+..+|++.|.+.|+.||+| +++..++... .....+..+++|...++|.+|++.+||..+... ...+.+....
T Consensus 9 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 9 GQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN--PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSS--SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC--CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 7899999999999999999999 5555554420 001113467899999999999999999877422 2222222121
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecC
Q 009356 80 PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG 159 (537)
Q Consensus 80 ~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g 159 (537)
.. .......++|||+|||.++|+++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|.+|++.|||..+..|
T Consensus 87 ~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 87 SE-KNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp GG-CCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred cc-ccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 11 1233457899999999999999999999999999999999996 699999999999999999999999999988777
Q ss_pred CceeEEEeecc
Q 009356 160 EQASIKVRFAD 170 (537)
Q Consensus 160 ~~~~l~v~~a~ 170 (537)
.++.|+|.|++
T Consensus 165 ~~~~l~V~~ad 175 (175)
T 3nmr_A 165 CSSPMVVKFAD 175 (175)
T ss_dssp CSSCCEEEECC
T ss_pred CCCCeEEEecC
Confidence 67999999974
No 24
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.89 E-value=1.2e-23 Score=192.59 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=134.1
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~~ 82 (537)
|+|+..+|++.|.+.|+.||+|..+...+++. .....+..+++|...++|.+|++.++|..+.+..+++.|..+..
T Consensus 9 ~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~-- 84 (168)
T 1b7f_A 9 NYLPQDMTDRELYALFRAIGPINTCRIMRDYK--TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG-- 84 (168)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEECCEETT--TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS--
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC--CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc--
Confidence 78999999999999999999995554433221 01111346789999999999999999999988877888765533
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 83 ~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
.....++|||+|||.++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.|+|..+ .|..+
T Consensus 85 --~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~~ 161 (168)
T 1b7f_A 85 --ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP-EGGSQ 161 (168)
T ss_dssp --STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC-TTCSS
T ss_pred --ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe-cCCCe
Confidence 234568999999999999999999999999999999999988999999999999999999999999999976 44458
Q ss_pred eEEEeec
Q 009356 163 SIKVRFA 169 (537)
Q Consensus 163 ~l~v~~a 169 (537)
.|+|.+|
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 25
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.89 E-value=1.5e-23 Score=191.50 Aligned_cols=160 Identities=24% Similarity=0.298 Sum_probs=132.7
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~~ 82 (537)
|+|++.+|++.|.+.|+.||+|..+...+.+. .....+...++|...++|.+|++.+||..+.+..+++.+..+...
T Consensus 8 ~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~- 84 (167)
T 1fxl_A 8 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI--TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA- 84 (167)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT--TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-
T ss_pred cCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-
Confidence 78999999999999999999994444333221 111113467899999999999999999999888778877654332
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 83 ~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
....++|||+|||.++++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|.+|++.|||..+ .|+..
T Consensus 85 ---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~~ 160 (167)
T 1fxl_A 85 ---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP-SGATE 160 (167)
T ss_dssp ---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC-TTCSS
T ss_pred ---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc-CCCcc
Confidence 24568999999999999999999999999999999999988999999999999999999999999999976 45456
Q ss_pred eEEEeec
Q 009356 163 SIKVRFA 169 (537)
Q Consensus 163 ~l~v~~a 169 (537)
.|+|.||
T Consensus 161 ~i~v~~A 167 (167)
T 1fxl_A 161 PITVKFA 167 (167)
T ss_dssp CCEEEEC
T ss_pred ceEEEeC
Confidence 7888875
No 26
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.89 E-value=1.7e-23 Score=199.84 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=135.9
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~~ 82 (537)
|+|+..+|++.|.+.|+.||+|..+...++.. .....+..+++|...++|.+|++.+||..+.+..+++.+.......
T Consensus 34 ~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 111 (216)
T 2qfj_A 34 GSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV--TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQA 111 (216)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C--C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGG
T ss_pred ECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC--CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcccc
Confidence 68999999999999999999995554433321 1111144678999999999999999999998777777664432211
Q ss_pred C-------CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCce
Q 009356 83 I-------NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY 155 (537)
Q Consensus 83 ~-------~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~ 155 (537)
. ......++|||+|||.++++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|++.|+|..
T Consensus 112 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 191 (216)
T 2qfj_A 112 QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFD 191 (216)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred chhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCE
Confidence 0 122456899999999999999999999999999999999999899999999999999999999999999998
Q ss_pred eecCCceeEEEeeccCCCC
Q 009356 156 IFPGEQASIKVRFADGERE 174 (537)
Q Consensus 156 ~~~g~~~~l~v~~a~~~~~ 174 (537)
| .++.|+|.++.....
T Consensus 192 ~---~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 192 L---GGQYLRVGKAVTPPM 207 (216)
T ss_dssp C---SSSBCEEEECSSCSS
T ss_pred e---CCcEEEEEEecCCCC
Confidence 7 678999999877644
No 27
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.88 E-value=5.6e-23 Score=193.14 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=127.5
Q ss_pred CCCCCCCCCccccccCCCCCCc--cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNY--CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAP 80 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~ 80 (537)
|+|+..+|++.|.+.|+.||+| +.++.++.. ....+..+++|...++|.+|++. +|..+.+..+++.+.....
T Consensus 19 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~----g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~ 93 (196)
T 1l3k_A 19 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT----KRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRE 93 (196)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC--
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCC----CCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcc
Confidence 7899999999999999999999 555555432 11113467899999999999977 7777777766766654432
Q ss_pred CC--CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeec
Q 009356 81 DH--INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP 158 (537)
Q Consensus 81 ~~--~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~ 158 (537)
.. .......++|||+|||.++++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+||+. +|..+
T Consensus 94 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~-- 170 (196)
T 1l3k_A 94 DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV-- 170 (196)
T ss_dssp ---------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE--
T ss_pred cccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEE--
Confidence 22 12334568999999999999999999999999999999999998999999999999999999999965 78776
Q ss_pred CCceeEEEeeccCCCCC
Q 009356 159 GEQASIKVRFADGEREH 175 (537)
Q Consensus 159 g~~~~l~v~~a~~~~~~ 175 (537)
.++.|+|.++..+...
T Consensus 171 -~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 171 -NGHNCEVRKALSKQEM 186 (196)
T ss_dssp -TTEECEEEECC-----
T ss_pred -CCEEEEEEecCChhHh
Confidence 6689999998776543
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.88 E-value=6.3e-23 Score=188.66 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=129.9
Q ss_pred CCCCCCCCCccccccCCCC----C-------CccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcc
Q 009356 3 GHVGEYITDPPEFNPNSFS----G-------NYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGR 71 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~----G-------~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~ 71 (537)
|+|+..+|++.|.+.|+.| | .|..+...+.+ +..+++|...++|.+|+ .+||..+.+..+
T Consensus 10 ~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~--------g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 10 GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK--------NFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp ESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT--------TEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC--------CEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 7899999999999999999 4 44333333332 45678999999999999 899999987777
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHh
Q 009356 72 KRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151 (537)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 151 (537)
++.+..... .....++|||+|||.++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++.|
T Consensus 81 ~v~~~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 81 KIRRPHDYQ----PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EEECCSSCC----CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eecCCcccC----CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 777643322 2344789999999999999999999999999999999999889999999999999999999999999
Q ss_pred cCceeecCCceeEEEeecc
Q 009356 152 NGHYIFPGEQASIKVRFAD 170 (537)
Q Consensus 152 ~g~~~~~g~~~~l~v~~a~ 170 (537)
+|..+ .++.|+|.++.
T Consensus 157 ~g~~~---~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQL---GDKKLLVQRAS 172 (172)
T ss_dssp TTCEE---TTEECEEEECC
T ss_pred CCCEE---CCeEEEEEeCC
Confidence 99988 67999999873
No 29
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=3.5e-22 Score=181.81 Aligned_cols=143 Identities=24% Similarity=0.320 Sum_probs=113.2
Q ss_pred EEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecC------CceeEEEeeccC--CCCCCCCCCCCcccccCC
Q 009356 118 EVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG------EQASIKVRFADG--EREHPVAPPDKLYVGCLS 189 (537)
Q Consensus 118 ~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g------~~~~l~v~~a~~--~~~~~~~~~~~l~V~nl~ 189 (537)
.++|+++. .+++|||||+|.+.++|++|++.+++.....+ ............ .........++|||+||+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 46777775 37999999999999999999988876433222 111111111111 111123457899999999
Q ss_pred cCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCCCC
Q 009356 190 KQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPR 265 (537)
Q Consensus 190 ~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~~~~~~ 265 (537)
.++++++|+++|+.||.|..|.|+.| .+|.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.|++++..+
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEEEECCCCCCC
Confidence 99999999999999999999999999 5899999999999999999999999999987 8999999999876543
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.87 E-value=1.3e-22 Score=192.74 Aligned_cols=158 Identities=11% Similarity=-0.005 Sum_probs=125.8
Q ss_pred CCCC-CCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCC
Q 009356 3 GHVG-EYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPD 81 (537)
Q Consensus 3 ~~~~-~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~ 81 (537)
|||+ +.+|++.|+++|+.||+|.++...+.+ + +..+++|...++|..|++.|||..+.+..+++.++.....
T Consensus 10 ~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~---g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 10 YGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----P---GAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp ECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----T---TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred eCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----C---CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 7899 899999999999999999666554432 1 4568899999999999999999999888777776532110
Q ss_pred CC---------------------------------CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCe--EEEEeccCCC
Q 009356 82 HI---------------------------------NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNV--IEVVLPKDKR 126 (537)
Q Consensus 82 ~~---------------------------------~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I--~~v~i~~d~~ 126 (537)
.. ....+.++|||+|||+++|+++|+++|+.||.| .+|+++.++
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~- 161 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK- 161 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-
Confidence 00 001345789999999999999999999999999 899999885
Q ss_pred CCCccceEEEEEccHHHHHHHHHHhcCceeecC-CceeEEEeec
Q 009356 127 TGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG-EQASIKVRFA 169 (537)
Q Consensus 127 tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g-~~~~l~v~~a 169 (537)
|..+|||||+|.+.++|.+||..|||..|... ...++.|+++
T Consensus 162 -~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 -SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp -SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred -CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 56679999999999999999999999987322 2345555553
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.87 E-value=5e-23 Score=188.41 Aligned_cols=155 Identities=14% Similarity=0.195 Sum_probs=123.6
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccc---cCCcccCCCcccccCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDF---FNGQPMPFIGRKRGFNHPA 79 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~---~ng~~l~~~~~~~~~~~~~ 79 (537)
|+|+..+|++.|.+.|+.||+|..+...+++. .....+..+++|...++|.+|++. ++|+.+ ++.+..+.
T Consensus 9 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i-----~v~~~~~~ 81 (167)
T 2cjk_A 9 GGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA--TGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI-----DPKRAIPR 81 (167)
T ss_dssp CSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT--TSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC-----CCEECCCH
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC--CCCccceEEEEEccHHHHHHHHhcccccCCeEc-----ccccccch
Confidence 79999999999999999999995555443321 111113467889999999999886 555555 33333221
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecC
Q 009356 80 PDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG 159 (537)
Q Consensus 80 ~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g 159 (537)
......++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++ ++|..+
T Consensus 82 ----~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--- 153 (167)
T 2cjk_A 82 ----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF--- 153 (167)
T ss_dssp ----HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS---
T ss_pred ----hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe---
Confidence 112345799999999999999999999999999999999998899999999999999999999996 888777
Q ss_pred CceeEEEeeccCC
Q 009356 160 EQASIKVRFADGE 172 (537)
Q Consensus 160 ~~~~l~v~~a~~~ 172 (537)
.++.|+|.++..+
T Consensus 154 ~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 KDRKIEIKRAEPR 166 (167)
T ss_dssp SSSCEEEEECCCC
T ss_pred CCeEEEEeecCCC
Confidence 6789999998754
No 32
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.87 E-value=2.5e-22 Score=188.93 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=133.1
Q ss_pred CCCCCCCCCccccccCCCCCCc-----------cEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcc
Q 009356 3 GHVGEYITDPPEFNPNSFSGNY-----------CSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGR 71 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~ 71 (537)
|+|+..+|++.|.+.|+.||+| ..+...+.+ +..+++|...++|.+|+ .+||..+.+..+
T Consensus 10 ~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~--------g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 10 GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK--------NFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp ESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT--------TEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC--------CEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 7999999999999999999654 222222222 45678999999999999 899999988877
Q ss_pred cccCCCCCCCC----------------CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEE
Q 009356 72 KRGFNHPAPDH----------------INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135 (537)
Q Consensus 72 ~~~~~~~~~~~----------------~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aF 135 (537)
++.+....... .......++|||+|||.++++++|+++|+.||.|..|++++++.+|+++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 77765432111 01124679999999999999999999999999999999999988999999999
Q ss_pred EEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCC
Q 009356 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174 (537)
Q Consensus 136 V~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 174 (537)
|+|.+.++|++|++.|+|..+ .++.|+|.++..+..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQL---GDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEE---TTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEE---CCEEEEEEECCCCCC
Confidence 999999999999999999988 679999999976543
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=6e-22 Score=170.53 Aligned_cols=103 Identities=17% Similarity=0.371 Sum_probs=74.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
..+|||+|||+++|+++|+++|+.||.|.+|+|++|+ +.+||||||+|.+.++|++||+.|+|..+ .++.|+|.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~---~g~~i~V~~ 79 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVFVGR 79 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEE
Confidence 5789999999999999999999999999999999985 45899999999999999999999999988 678999999
Q ss_pred ccCCCCCC------CCCCCCcccccCCcCCCHHH
Q 009356 169 ADGEREHP------VAPPDKLYVGCLSKQTSKKE 196 (537)
Q Consensus 169 a~~~~~~~------~~~~~~l~V~nl~~~~te~~ 196 (537)
+..+..+. .....+|||+||++++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 87655433 22356899999999999864
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.86 E-value=4.5e-22 Score=196.34 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=134.9
Q ss_pred CCCCCCCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDH 82 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~~ 82 (537)
|+|+..+|++.|.+.|+.||+|..+...+++ +..++.|...++|.+|++.+||..+.+..+++.|..
T Consensus 28 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k--------g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~----- 94 (261)
T 3sde_A 28 GNLPTDITEEDFKRLFERYGEPSEVFINRDR--------GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT----- 94 (261)
T ss_dssp ESCCTTCCHHHHHHHTGGGCCCSEEEEETTT--------TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC-----
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC--------cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc-----
Confidence 7899999999999999999999666665543 457789999999999999999999988777777743
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHh-cCceeecCCc
Q 009356 83 INDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL-NGHYIFPGEQ 161 (537)
Q Consensus 83 ~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l-~g~~~~~g~~ 161 (537)
..++|||+|||.++|+++|+++|+.||.|.+|+|++|. +|+++|||||+|.+.++|.+||+.| +|..++.+.+
T Consensus 95 -----~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 95 -----HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp -----CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred -----cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 25799999999999999999999999999999999994 9999999999999999999999999 5666666668
Q ss_pred eeEEEeeccCCCCC
Q 009356 162 ASIKVRFADGEREH 175 (537)
Q Consensus 162 ~~l~v~~a~~~~~~ 175 (537)
+.|.|.++......
T Consensus 169 r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 169 RPVIVEPMEQFDDE 182 (261)
T ss_dssp CBCEEEECCCEESS
T ss_pred ceEEEeeccccCcc
Confidence 99999998765443
No 35
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.84 E-value=4.4e-21 Score=191.13 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=127.3
Q ss_pred CCCCCCCCCcc----ccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCC
Q 009356 3 GHVGEYITDPP----EFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHP 78 (537)
Q Consensus 3 ~~~~~~it~~~----l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~ 78 (537)
|+|+..+|++. |++.|+.||+|..|...+.+. ++ +..+++|...++|.+|++.+||..|.+..+++.|...
T Consensus 15 ~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~--~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 15 NNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLK--MR---GQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred eCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCC--cc---eEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 78999999999 559999999996665554321 11 3467899999999999999999999887777766543
Q ss_pred CCC-----------------------------------------------------------------------------
Q 009356 79 APD----------------------------------------------------------------------------- 81 (537)
Q Consensus 79 ~~~----------------------------------------------------------------------------- 81 (537)
..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~ 169 (282)
T 3pgw_A 90 DSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGM 169 (282)
T ss_pred CcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCC
Confidence 221
Q ss_pred ------------------------------CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCcc
Q 009356 82 ------------------------------HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQ 131 (537)
Q Consensus 82 ------------------------------~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k 131 (537)
........++|||+|||.++++++|+++|++||.|.+|+|+.++ +
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~ 244 (282)
T 3pgw_A 170 IPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----H 244 (282)
T ss_pred CCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----C
Confidence 00122356889999999999999999999999999999999765 5
Q ss_pred ceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeecc
Q 009356 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFAD 170 (537)
Q Consensus 132 G~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 170 (537)
|||||+|.+.++|.+|++.|||..+.. ++.|+|.|++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~--g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQ--NNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCC--CCEEEEEEec
Confidence 899999999999999999999998732 6899999985
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.83 E-value=5.5e-21 Score=180.15 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=127.9
Q ss_pred CCCCC-CCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCC
Q 009356 3 GHVGE-YITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPD 81 (537)
Q Consensus 3 ~~~~~-~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~ 81 (537)
|+|++ .+|++.|.+.|+.||+|..+...+.+. +..+++|...+.|.+|++.+||..+.+..+++.|......
T Consensus 9 ~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~-------g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 9 SNLNPERVTPQSLFILFGVYGDVQRVKILFNKK-------ENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp ECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCS-------SCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred eCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCC-------CEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 78999 999999999999999996665554431 3467899999999999999999999888777776543211
Q ss_pred CC-------------------------------CCCCCCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeccCCCCCC
Q 009356 82 HI-------------------------------NDSGIPAKLYVAPVPRTATEEDIRPLFEEHG-NVIEVVLPKDKRTGQ 129 (537)
Q Consensus 82 ~~-------------------------------~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~ 129 (537)
.. ....+.++|||+|||.++++++|+++|+.|| .|.+|+|+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---- 157 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---- 157 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----
Confidence 00 0123478999999999999999999999999 99999997753
Q ss_pred ccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccC
Q 009356 130 QQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADG 171 (537)
Q Consensus 130 ~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 171 (537)
+|||||+|.+.++|.+|++.|+|..+. .++.|+|.|++.
T Consensus 158 -~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v~~a~~ 196 (198)
T 1qm9_A 158 -RKMALIQMGSVEEAVQALIDLHNHDLG--ENHHLRVSFSKS 196 (198)
T ss_dssp -SSCEEEECSSHHHHHHHHHHHTSSCCS--SCCSCCEEEECC
T ss_pred -CcEEEEEeCCHHHHHHHHHHhcCCccC--CCCeEEEEeecc
Confidence 689999999999999999999999872 268899999864
No 37
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=1.9e-21 Score=179.53 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=126.1
Q ss_pred CCCCCCCCCccccccCCCCCCccE-EeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCC
Q 009356 3 GHVGEYITDPPEFNPNSFSGNYCS-WSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPD 81 (537)
Q Consensus 3 ~~~~~~it~~~l~~~Fs~~G~i~~-v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~ 81 (537)
|+|+..+|++.|.+.|+.||.++. ++.+... ..++ +..+++|...++|.+|+ .+||..+.+..+++.+..+...
T Consensus 19 ~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~-~~~~---g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 19 GNLNPNKSVAELKVAISELFAKNDLAVVDVRT-GTNR---KFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE-ETTT---TEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSC
T ss_pred eCCCCCCCHHHHHHHHHHhCCcceEEEEECCC-Cccc---cEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccc
Confidence 789999999999999999998844 1111110 0011 34678999999999999 5999999887777777654322
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009356 82 HINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 82 ~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
......++|||+|||.++++++|+++|+.||.|..+ ..+|+++|||||+|.+.++|.+|++.|+|..+ .+
T Consensus 94 --~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g 163 (175)
T 1fje_B 94 --KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DG 163 (175)
T ss_dssp --STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE---TT
T ss_pred --cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---CC
Confidence 244567999999999999999999999999988765 45899999999999999999999999999987 67
Q ss_pred eeEEEeeccCC
Q 009356 162 ASIKVRFADGE 172 (537)
Q Consensus 162 ~~l~v~~a~~~ 172 (537)
+.|+|.++..+
T Consensus 164 ~~i~v~~a~~k 174 (175)
T 1fje_B 164 RSVSLYYTGEK 174 (175)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEecCCC
Confidence 89999998754
No 38
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.83 E-value=1.1e-20 Score=182.72 Aligned_cols=155 Identities=16% Similarity=0.183 Sum_probs=127.2
Q ss_pred CCCCC-CCCCccccccCCCCCCccEEeecCCCCCCCCCCcCccccccchhhcccccccccCCcccCCCcccccCCCCCCC
Q 009356 3 GHVGE-YITDPPEFNPNSFSGNYCSWSSDDHRHNFPDNYHSHHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPD 81 (537)
Q Consensus 3 ~~~~~-~it~~~l~~~Fs~~G~i~~v~~~~~~~~~~~~~~~~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~ 81 (537)
|+|+. .+|++.|.+.|+.||+|..+...+.+. +..+++|...+.|.+|++.+||..+.+..+++.|......
T Consensus 40 ~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~-------g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 112 (229)
T 2adc_A 40 SNLNPERVTPQSLFILFGVYGDVQRVKILFNKK-------ENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 112 (229)
T ss_dssp ESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTS-------CCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCC
T ss_pred eCCCcccCCHHHHHHHHHhCCCeEEEEEEECCC-------CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccc
Confidence 68999 999999999999999995555444321 3478899999999999999999999888777776543211
Q ss_pred CC-------------------------------CCCCCCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeccCCCCCC
Q 009356 82 HI-------------------------------NDSGIPAKLYVAPVPRTATEEDIRPLFEEHG-NVIEVVLPKDKRTGQ 129 (537)
Q Consensus 82 ~~-------------------------------~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~ 129 (537)
.. ....+.++|||+|||.++++++|+++|+.|| .|..|+|+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----- 187 (229)
T 2adc_A 113 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----- 187 (229)
T ss_dssp CCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----
T ss_pred cCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----
Confidence 00 0123468999999999999999999999999 9999999764
Q ss_pred ccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccC
Q 009356 130 QQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADG 171 (537)
Q Consensus 130 ~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 171 (537)
++|||||+|.+.++|.+|++.|+|..+. .++.|+|.|++.
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~--~g~~l~v~~a~~ 227 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLG--ENHHLRVSFSKS 227 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSS--SSCBCEEEECSS
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccC--CCCeEEEEEecC
Confidence 3689999999999999999999999872 268999999865
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1.6e-20 Score=169.30 Aligned_cols=126 Identities=21% Similarity=0.318 Sum_probs=110.9
Q ss_pred CCCccceEEEEEccHHHHHHHHHHh-cCceeecCCceeEEEeeccCC--------------CCCCCCCCCCcccccCCcC
Q 009356 127 TGQQQGYCFVKFTIFEEAGNAIRAL-NGHYIFPGEQASIKVRFADGE--------------REHPVAPPDKLYVGCLSKQ 191 (537)
Q Consensus 127 tg~~kG~aFV~F~~~e~A~~Ai~~l-~g~~~~~g~~~~l~v~~a~~~--------------~~~~~~~~~~l~V~nl~~~ 191 (537)
..+.+|+++|+|.+.++|++|++.| ||..+ .+ .+++.++... ........++|||+|||++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGV---DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTC---CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCC---CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 3467899999999999999999999 99877 45 7888887652 1222456789999999999
Q ss_pred CCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCC
Q 009356 192 TSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 192 ~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~~~~ 263 (537)
+++++|+++|+.||.|..|+|+++ ++|||||+|.+.++|.+|++.|||..+ +|+.|+|.|+.+++
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTL---CGCRVRVELSNGEK 149 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSCCEEEECCCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEEcCCCC
Confidence 999999999999999999999986 689999999999999999999999987 89999999998764
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=155.51 Aligned_cols=82 Identities=33% Similarity=0.524 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
..+++|||+|||.++|+++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..+ .++.|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---~gr~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL---QSKTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE---CCEEEEE
Confidence 3468999999999999999999999999999999999999999999999999999999999999999988 6799999
Q ss_pred eeccC
Q 009356 167 RFADG 171 (537)
Q Consensus 167 ~~a~~ 171 (537)
.++++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99864
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=151.94 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
.+.++|||+|||+++++++|+++|++||.|.+|+|++|+.||++||||||+|.+.++|++||+.|||..+ .++.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---~gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---MGNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEE
Confidence 3568999999999999999999999999999999999999999999999999999999999999999988 7799999
Q ss_pred eeccCCC
Q 009356 167 RFADGER 173 (537)
Q Consensus 167 ~~a~~~~ 173 (537)
.++...+
T Consensus 81 ~~a~~~~ 87 (110)
T 3s8s_A 81 QLDIKGQ 87 (110)
T ss_dssp EECSTTH
T ss_pred EECCCCc
Confidence 9986553
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=148.62 Aligned_cols=84 Identities=26% Similarity=0.475 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
+++|||+|||.++||++|+++|+.|| .|.+|+|++|+.+|++||||||+|.+.++|++||+.+++...+ .++.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 47899999999999999999999999 8999999999999999999999999999999999888654433 56899999
Q ss_pred eccCCCC
Q 009356 168 FADGERE 174 (537)
Q Consensus 168 ~a~~~~~ 174 (537)
++..+..
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 9976544
No 43
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=9.3e-19 Score=147.98 Aligned_cols=92 Identities=34% Similarity=0.553 Sum_probs=84.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|+|..++.+.++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999998877778999
Q ss_pred EEeeccCCCCCC
Q 009356 165 KVRFADGEREHP 176 (537)
Q Consensus 165 ~v~~a~~~~~~~ 176 (537)
+|.+++.+..+.
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998766543
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=5.1e-19 Score=160.76 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=100.7
Q ss_pred cccccchhhcccccccccCCcccCCCcccc-------c-CC-CCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccC
Q 009356 44 HRRHYQYDQMSSEPTDFFNGQPMPFIGRKR-------G-FN-HPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHG 114 (537)
Q Consensus 44 ~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~-------~-~~-~~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G 114 (537)
.+++|...+.|++|++.+++.......... . +. .............++|||+|||+++++++|+++|+.||
T Consensus 16 ~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 95 (158)
T 2kn4_A 16 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG 95 (158)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 457888899999998776653321111110 0 00 01111222344579999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCC
Q 009356 115 NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREH 175 (537)
Q Consensus 115 ~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 175 (537)
.|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||..+ .++.|+|.+++..+..
T Consensus 96 ~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 96 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRELRVQMARYGRPP 153 (158)
T ss_dssp CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEEEEEEECCSSCC
T ss_pred CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEEEECCCCCCC
Confidence 999999999998999999999999999999999999999987 6789999999876544
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=147.97 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCC--eEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCce---eecCCce
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGN--VIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY---IFPGEQA 162 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~---~~~g~~~ 162 (537)
.=.+|||+|||+++|+++|+++|++||. |.+|+|++|+.+|++||||||+|.+.++|++||+.|||.. .+ .++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i--~Gr 85 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI--DGK 85 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE--TTE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE--CCE
Confidence 3479999999999999999999999995 6799999999999999999999999999999999999973 23 468
Q ss_pred eEEEeeccC
Q 009356 163 SIKVRFADG 171 (537)
Q Consensus 163 ~l~v~~a~~ 171 (537)
.|+|.+++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 46
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=3.2e-18 Score=144.37 Aligned_cols=90 Identities=36% Similarity=0.594 Sum_probs=81.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++||+.|+|..+..+..+.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457999999999999999999999999999999999998 899999999999999999999999999988554448999
Q ss_pred EeeccCCCCCC
Q 009356 166 VRFADGEREHP 176 (537)
Q Consensus 166 v~~a~~~~~~~ 176 (537)
|.+++.+..+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99998776553
No 47
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=142.70 Aligned_cols=87 Identities=28% Similarity=0.418 Sum_probs=80.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|+|..+ .++.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 81 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---QGRMLH 81 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---SSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999987 678999
Q ss_pred EeeccCCCCC
Q 009356 166 VRFADGEREH 175 (537)
Q Consensus 166 v~~a~~~~~~ 175 (537)
|.++..+...
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 9999877654
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=143.66 Aligned_cols=88 Identities=31% Similarity=0.464 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|++||+.|+|..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 87 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---YGKPI 87 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---SSCBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence 445679999999999999999999999999999999999998999999999999999999999999999987 67899
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.++..+...
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876554
No 49
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=143.86 Aligned_cols=89 Identities=25% Similarity=0.407 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+....++|||+|||.++++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|++||+.|+|..+ .++.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 85 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---DGREL 85 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---TTBCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---CCcEE
Confidence 345679999999999999999999999999999999999999999999999999999999999999999987 67899
Q ss_pred EEeeccCCCCCC
Q 009356 165 KVRFADGEREHP 176 (537)
Q Consensus 165 ~v~~a~~~~~~~ 176 (537)
+|.+++..+...
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dnm_A 86 RVQVARYGRRDL 97 (103)
T ss_dssp EEEECSSCCSCC
T ss_pred EEEECCcCCCCC
Confidence 999998765443
No 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=2.5e-18 Score=142.70 Aligned_cols=84 Identities=29% Similarity=0.499 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
++++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---GSRFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEE
Confidence 358999999999999999999999999999999999998999999999999999999999999999987 67999999
Q ss_pred eccCCCC
Q 009356 168 FADGERE 174 (537)
Q Consensus 168 ~a~~~~~ 174 (537)
++..+..
T Consensus 78 ~a~~~~~ 84 (96)
T 2x1f_A 78 YSSNSDI 84 (96)
T ss_dssp ECSCSSG
T ss_pred EcCCCCC
Confidence 9987643
No 51
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=6e-19 Score=156.12 Aligned_cols=125 Identities=23% Similarity=0.371 Sum_probs=82.9
Q ss_pred ccccccchhhcccccccccCCcccCCCcccccCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEec
Q 009356 43 HHRRHYQYDQMSSEPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLP 122 (537)
Q Consensus 43 ~~~~~~~~~e~A~~a~~~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~ 122 (537)
+.+.+|.....+.+|+..++|....+.+ ...+..+. .+....++|||+|||.++++++|+++|+.||.|..|+|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 80 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPP----PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP 80 (135)
T ss_dssp ------------------------------CCSCCSC----SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCC----CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 4556777778888999999987764432 23333332 234557899999999999999999999999999999999
Q ss_pred cCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCC
Q 009356 123 KDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREH 175 (537)
Q Consensus 123 ~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 175 (537)
+++.+|+++|||||+|.+.++|++||+.|+|..+ .++.|+|.+++..+..
T Consensus 81 ~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 81 RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRELRVQMARYGRPP 130 (135)
T ss_dssp CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---SSSCCEEEECCCCCCC
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEECCCCCCC
Confidence 9998999999999999999999999999999987 6789999999866543
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=142.46 Aligned_cols=87 Identities=23% Similarity=0.425 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++||+ |++..+ .++.|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~l~ 82 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---MGKKVE 82 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---SSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---CCeEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999997 999877 678999
Q ss_pred EeeccCCCCCC
Q 009356 166 VRFADGEREHP 176 (537)
Q Consensus 166 v~~a~~~~~~~ 176 (537)
|.++..+....
T Consensus 83 V~~a~~~~~~~ 93 (99)
T 2dgs_A 83 VKRAEPRDSKS 93 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEECCCCcccC
Confidence 99998765543
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=141.11 Aligned_cols=86 Identities=30% Similarity=0.472 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---AGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---SSSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---CCcEEEE
Confidence 3568999999999999999999999999999999999998999999999999999999999999999987 6789999
Q ss_pred eeccCCCCC
Q 009356 167 RFADGEREH 175 (537)
Q Consensus 167 ~~a~~~~~~ 175 (537)
.++..+...
T Consensus 80 ~~a~~~~~~ 88 (95)
T 2dnz_A 80 GHVTERLDG 88 (95)
T ss_dssp EESSCCCCC
T ss_pred EEcccccCC
Confidence 999876554
No 54
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.3e-18 Score=138.68 Aligned_cols=80 Identities=24% Similarity=0.444 Sum_probs=76.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009356 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
.+|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee---CCcEEEEEec
Confidence 6899999999999999999999999999999999998999999999999999999999999999987 6799999998
Q ss_pred cCC
Q 009356 170 DGE 172 (537)
Q Consensus 170 ~~~ 172 (537)
..+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 765
No 55
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=140.45 Aligned_cols=82 Identities=26% Similarity=0.432 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEE
Confidence 468999999999999999999999999999999999988999999999999999999999999999987 67899999
Q ss_pred eccCC
Q 009356 168 FADGE 172 (537)
Q Consensus 168 ~a~~~ 172 (537)
+++.+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 98753
No 56
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=2.8e-18 Score=147.30 Aligned_cols=89 Identities=24% Similarity=0.393 Sum_probs=81.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|+|..| .++.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---GMKRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 444568999999999999999999999999999999999998999999999999999999999999999987 67999
Q ss_pred EEeeccCCCCCC
Q 009356 165 KVRFADGEREHP 176 (537)
Q Consensus 165 ~v~~a~~~~~~~ 176 (537)
+|.+++.+..+.
T Consensus 98 ~V~~a~~~~~~~ 109 (115)
T 2cpz_A 98 KVQLKRSKNDSK 109 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEEcCCCCcCC
Confidence 999998766543
No 57
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.4e-18 Score=139.25 Aligned_cols=81 Identities=25% Similarity=0.474 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 4569999999999999999999999999999999999988999999999999999999999999999988 6789999
Q ss_pred eecc
Q 009356 167 RFAD 170 (537)
Q Consensus 167 ~~a~ 170 (537)
.+++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9874
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=5.8e-18 Score=145.33 Aligned_cols=90 Identities=28% Similarity=0.482 Sum_probs=82.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 84 ~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
.+....++|||+|||.++++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|++||+.|+|..| .++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 86 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQ 86 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCEE
Confidence 3455679999999999999999999999999999999999988999999999999999999999999999987 6789
Q ss_pred EEEeeccCCCCCC
Q 009356 164 IKVRFADGEREHP 176 (537)
Q Consensus 164 l~v~~a~~~~~~~ 176 (537)
|+|.++..+....
T Consensus 87 l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 87 IRTNWATRKPPAP 99 (115)
T ss_dssp CEEEESSCCCCCS
T ss_pred EEEEEccCCCCCC
Confidence 9999998765543
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=140.00 Aligned_cols=82 Identities=29% Similarity=0.436 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---FGRVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---CCcEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999988 679999
Q ss_pred Eeecc
Q 009356 166 VRFAD 170 (537)
Q Consensus 166 v~~a~ 170 (537)
|.+++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 60
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=143.59 Aligned_cols=88 Identities=27% Similarity=0.479 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+....++|||+|||.++++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|++||+.|+|..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 87 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---DHLIL 87 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---CCcEE
Confidence 445679999999999999999999999999999999999998999999999999999999999999999987 67999
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.++..+...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999876554
No 61
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=143.44 Aligned_cols=88 Identities=24% Similarity=0.435 Sum_probs=81.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|+|..+ .++.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 34579999999999999999999999999999999999998999999999999999999999999999988 679999
Q ss_pred EeeccCCCCCC
Q 009356 166 VRFADGEREHP 176 (537)
Q Consensus 166 v~~a~~~~~~~ 176 (537)
|.++.....+.
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2cqb_A 86 VNLAKPMRIKE 96 (102)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998766544
No 62
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.2e-18 Score=157.04 Aligned_cols=121 Identities=17% Similarity=0.282 Sum_probs=100.9
Q ss_pred cccccchhhccccccccc-CCcccCCCcccccCCCC------------CCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHh
Q 009356 44 HRRHYQYDQMSSEPTDFF-NGQPMPFIGRKRGFNHP------------APDHINDSGIPAKLYVAPVPRTATEEDIRPLF 110 (537)
Q Consensus 44 ~~~~~~~~e~A~~a~~~~-ng~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F 110 (537)
..++|...+.|++|++.+ ||..+.+ .+++.+... ...........++|||+|||+++++++|+++|
T Consensus 16 ~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 94 (150)
T 2i2y_A 16 TTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAF 94 (150)
T ss_dssp EEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHH
T ss_pred ceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 345688889999999999 9988877 666655433 11222344567999999999999999999999
Q ss_pred hccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCC
Q 009356 111 EEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGER 173 (537)
Q Consensus 111 ~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 173 (537)
+.||.|.+|+|+++ ++|||||+|.+.++|++||+.|||..+ .++.|+|.++..++
T Consensus 95 ~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 95 GYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL---CGCRVRVELSNGEK 149 (150)
T ss_dssp HHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSCCEEEECCCCC
T ss_pred HhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEEcCCCC
Confidence 99999999999887 579999999999999999999999987 67899999987653
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=140.95 Aligned_cols=84 Identities=24% Similarity=0.366 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+..+.++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 87 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRI 87 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 445679999999999999999999999999999999999999999999999999999999999999999988 67999
Q ss_pred EEeeccC
Q 009356 165 KVRFADG 171 (537)
Q Consensus 165 ~v~~a~~ 171 (537)
+|.+++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 64
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.9e-18 Score=142.42 Aligned_cols=88 Identities=30% Similarity=0.486 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccC-CCCCCccceEEEEEccHHHHHHHHHHh-cCceeecCCce
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKD-KRTGQQQGYCFVKFTIFEEAGNAIRAL-NGHYIFPGEQA 162 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l-~g~~~~~g~~~ 162 (537)
.....++|||+|||.++++++|+++|+.||.|..|+|+++ +.+|+++|||||+|.+.++|++||+.| +|..+ .++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---~g~ 87 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---YGR 87 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---SSC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---CCC
Confidence 4456799999999999999999999999999999999999 789999999999999999999999999 89887 568
Q ss_pred eEEEeeccCCCCC
Q 009356 163 SIKVRFADGEREH 175 (537)
Q Consensus 163 ~l~v~~a~~~~~~ 175 (537)
.|+|.++..+...
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999876554
No 65
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=1.1e-18 Score=149.77 Aligned_cols=104 Identities=17% Similarity=0.360 Sum_probs=92.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|+.||.|.+|+|+++ +.++|||||+|.+.++|++|++.|||..+ .++.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v 79 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV---SNRYLVV 79 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS---SSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 45689999999999999999999999999999999875 45699999999999999999999999987 6789999
Q ss_pred eeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCC
Q 009356 167 RFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH 206 (537)
Q Consensus 167 ~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~ 206 (537)
.++...... ++++...++++|.++|++||.
T Consensus 80 ~~a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 80 LYYNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EECCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 998765443 577888999999999999985
No 66
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.7e-18 Score=142.85 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc------Cceeec
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN------GHYIFP 158 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~------g~~~~~ 158 (537)
+....++|||+|||.++++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|++||+.|+ +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 44567899999999999999999999999999999999999999999999999999999999999999 8877
Q ss_pred CCceeEEEeeccCCCCCC
Q 009356 159 GEQASIKVRFADGEREHP 176 (537)
Q Consensus 159 g~~~~l~v~~a~~~~~~~ 176 (537)
.++.|+|.++..+....
T Consensus 89 -~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 -DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp -SSCEEEEECCCCCCCCC
T ss_pred -cCEEEEEEECCCCccCC
Confidence 67899999998765543
No 67
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=141.64 Aligned_cols=86 Identities=23% Similarity=0.484 Sum_probs=79.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEV-VLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
..++|||+|||.++++++|+++|+.||.|.+| +|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence 46899999999999999999999999999999 9999988999999999999999999999999999987 6799999
Q ss_pred eeccCCCCCC
Q 009356 167 RFADGEREHP 176 (537)
Q Consensus 167 ~~a~~~~~~~ 176 (537)
.++..+..+.
T Consensus 81 ~~a~~~~~~~ 90 (96)
T 1x5t_A 81 SYAFKKDSKG 90 (96)
T ss_dssp EESCCCCCCC
T ss_pred EEecccCCCC
Confidence 9998765543
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=141.06 Aligned_cols=86 Identities=23% Similarity=0.455 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI---KENII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES---SSCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 34457899999999999999999999999999999999998 999999999999999999999999999887 67899
Q ss_pred EEeeccCCCC
Q 009356 165 KVRFADGERE 174 (537)
Q Consensus 165 ~v~~a~~~~~ 174 (537)
+|.+++.+..
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 69
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=142.12 Aligned_cols=87 Identities=28% Similarity=0.509 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|++||+.|||..+ .++.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---DGRQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---TSCCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 34569999999999999999999999999999999999999999999999999999999999999999987 678999
Q ss_pred EeeccCCCCC
Q 009356 166 VRFADGEREH 175 (537)
Q Consensus 166 v~~a~~~~~~ 175 (537)
|.++..+...
T Consensus 86 v~~a~~~~~~ 95 (102)
T 1x5s_A 86 VDQAGKSSDN 95 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEECCCCCCC
Confidence 9998876544
No 70
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=8.3e-19 Score=143.83 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=71.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 90 AKLYVAPVPRTATEEDIRPLFEEHG--NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
.+|||+|||.++++++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||..+ .++.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---SSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee---CCEEEEEE
Confidence 5899999999999999999999999 999999999999999999999999999999999999999987 67899999
Q ss_pred eccCCCC
Q 009356 168 FADGERE 174 (537)
Q Consensus 168 ~a~~~~~ 174 (537)
++.....
T Consensus 79 ~~~~~~~ 85 (90)
T 3p5t_L 79 PSNKLEH 85 (90)
T ss_dssp CC-----
T ss_pred ECCCCcc
Confidence 9876543
No 71
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=143.14 Aligned_cols=92 Identities=24% Similarity=0.420 Sum_probs=80.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009356 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
++|||+|||.++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|++.|+|..+ .++.|+|.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI---CGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS---SSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE---CCcEEEEEEc
Confidence 48999999999999999999999999999999987 689999999999999999999999987 5688999998
Q ss_pred cCCCCCC--------CCCCCCcccccCC
Q 009356 170 DGEREHP--------VAPPDKLYVGCLS 189 (537)
Q Consensus 170 ~~~~~~~--------~~~~~~l~V~nl~ 189 (537)
..+.... .....+||||||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 73 TGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCcccCCCCCccccCCCceecCCCC
Confidence 7654322 1226789999997
No 72
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=7.6e-18 Score=149.65 Aligned_cols=90 Identities=34% Similarity=0.500 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 84 ~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
.+....++|||+|||.++++++|+++|+.||.|++|+|++++.+|+++|||||+|.+.++|++||+.|+|..+ .++.
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 113 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---LNKR 113 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---SSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeE
Confidence 3456679999999999999999999999999999999999999999999999999999999999999999987 6789
Q ss_pred EEEeeccCCCCCC
Q 009356 164 IKVRFADGEREHP 176 (537)
Q Consensus 164 l~v~~a~~~~~~~ 176 (537)
|+|.+++.+..+.
T Consensus 114 l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 114 LKVALAASGHQRP 126 (139)
T ss_dssp EEEEESSCCCCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999998765543
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=141.38 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=76.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE--------VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
.....++|||+|||.++++++|+++|++||.|.+ |+|++++.+|+++|||||+|.+.++|++|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3455799999999999999999999999999999 99999998999999999999999999999999999987
Q ss_pred ecCCceeEEEeecc
Q 009356 157 FPGEQASIKVRFAD 170 (537)
Q Consensus 157 ~~g~~~~l~v~~a~ 170 (537)
.++.|+|.+++
T Consensus 89 ---~g~~l~V~~A~ 99 (99)
T 2la6_A 89 ---SGNPIKVSFAT 99 (99)
T ss_dssp ---SSSBCEEEECC
T ss_pred ---CCcEEEEEecC
Confidence 67889998873
No 74
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=144.46 Aligned_cols=86 Identities=31% Similarity=0.488 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i---~g~~l 98 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL---AGRPM 98 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 445679999999999999999999999999999999999998999999999999999999999999999887 67899
Q ss_pred EEeeccCCC
Q 009356 165 KVRFADGER 173 (537)
Q Consensus 165 ~v~~a~~~~ 173 (537)
+|.++..+.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999987653
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.3e-18 Score=145.61 Aligned_cols=82 Identities=21% Similarity=0.435 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCC
Q 009356 87 GIPAKLYVAPVPR------TATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160 (537)
Q Consensus 87 ~~~~~LfVgnLp~------~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~ 160 (537)
..+++|||+|||. ++++++|+++|++||.|.+|+|++|+.||++||||||+|.+.++|++||+.|||..+ .
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---~ 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL---D 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS---S
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc---C
Confidence 4468999999999 999999999999999999999999999999999999999999999999999999988 5
Q ss_pred c-eeEEEeeccC
Q 009356 161 Q-ASIKVRFADG 171 (537)
Q Consensus 161 ~-~~l~v~~a~~ 171 (537)
+ +.|+|.++..
T Consensus 81 g~r~l~V~~a~~ 92 (100)
T 3ns6_A 81 LKHRLFLYTMKD 92 (100)
T ss_dssp SSCBCEEEESHH
T ss_pred CCeEEEEEECch
Confidence 5 8999998864
No 76
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=5.1e-18 Score=148.86 Aligned_cols=86 Identities=26% Similarity=0.408 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+..+.++|||+|||.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|+|..| .++.|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---~g~~l 118 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRI 118 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 445679999999999999999999999999999999999999999999999999999999999999999887 67899
Q ss_pred EEeeccCCC
Q 009356 165 KVRFADGER 173 (537)
Q Consensus 165 ~v~~a~~~~ 173 (537)
+|.++..++
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999997765
No 77
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=143.36 Aligned_cols=85 Identities=34% Similarity=0.465 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 96 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPIS 96 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---CCcEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999987 568999
Q ss_pred EeeccCCC
Q 009356 166 VRFADGER 173 (537)
Q Consensus 166 v~~a~~~~ 173 (537)
|.++..+.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99987653
No 78
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=144.65 Aligned_cols=85 Identities=31% Similarity=0.548 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++||+.|+|..+ .++.|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l~ 79 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL---HGKAIK 79 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC---SSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 3456899999999999999999999999999999999998 999999999999999999999999999987 678999
Q ss_pred EeeccCCCC
Q 009356 166 VRFADGERE 174 (537)
Q Consensus 166 v~~a~~~~~ 174 (537)
|.+++....
T Consensus 80 V~~a~~~~~ 88 (116)
T 2fy1_A 80 VEQAKKPSF 88 (116)
T ss_dssp EEECCCSSC
T ss_pred EEECCCCCC
Confidence 999976543
No 79
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=141.93 Aligned_cols=85 Identities=27% Similarity=0.501 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee-
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVI-EVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS- 163 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~- 163 (537)
....++|||+|||.++++++|+++|++||.|. +|+|++++.+|+++|||||+|.+.++|++|++.|||..+ .++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~ 82 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL---PGATP 82 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---SSCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---CCCCc
Confidence 34579999999999999999999999999999 999999999999999999999999999999999999887 4455
Q ss_pred ---EEEeeccCCC
Q 009356 164 ---IKVRFADGER 173 (537)
Q Consensus 164 ---l~v~~a~~~~ 173 (537)
|+|.+++...
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999987654
No 80
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=143.17 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=81.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVI--------EVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
+....++|||+|||.++++++|+++|+.||.|. .|+|++++.+|+++|||||+|.+.++|++||+.|+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445679999999999999999999999999999 699999988999999999999999999999999999988
Q ss_pred ecCCceeEEEeeccCCCCC
Q 009356 157 FPGEQASIKVRFADGEREH 175 (537)
Q Consensus 157 ~~g~~~~l~v~~a~~~~~~ 175 (537)
.++.|+|.++..+...
T Consensus 91 ---~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 ---QGSKLKVSLARKKPPM 106 (113)
T ss_dssp ---TTEECEEECSSCCCCS
T ss_pred ---CCCEEEEEECCCCCCC
Confidence 6799999999876554
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=140.90 Aligned_cols=87 Identities=22% Similarity=0.428 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCC---CCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKR---TGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
.+.++|||+|||.++++++|+++|+.||.|..|+|++++. +++++|||||+|.+.++|++||+.|+|..+ .++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---DGHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee---CCeE
Confidence 3568999999999999999999999999999999999876 669999999999999999999999999987 6789
Q ss_pred EEEeeccCCCCCC
Q 009356 164 IKVRFADGEREHP 176 (537)
Q Consensus 164 l~v~~a~~~~~~~ 176 (537)
|+|.++..+....
T Consensus 80 l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 80 LEVRISERATKPA 92 (98)
T ss_dssp CEEECSSCSSCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998765543
No 82
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=140.60 Aligned_cols=87 Identities=24% Similarity=0.408 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|+++ +|+++|||||+|.+.++|++||+.|+|..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 85 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV---ATKPL 85 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe---CCcEE
Confidence 3456799999999999999999999999999999999998 899999999999999999999999999987 67899
Q ss_pred EEeeccCCCCCC
Q 009356 165 KVRFADGEREHP 176 (537)
Q Consensus 165 ~v~~a~~~~~~~ 176 (537)
+|.++..+..+.
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2d9p_A 86 YVALAQRKEERQ 97 (103)
T ss_dssp EEEECSSCCCCC
T ss_pred EEEEecccccCC
Confidence 999998776554
No 83
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=8.3e-18 Score=143.15 Aligned_cols=86 Identities=29% Similarity=0.399 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|+|..+ .++.|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCcEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999987 678999
Q ss_pred EeeccCCCC
Q 009356 166 VRFADGERE 174 (537)
Q Consensus 166 v~~a~~~~~ 174 (537)
|.++..+..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999876544
No 84
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=5.9e-18 Score=145.94 Aligned_cols=83 Identities=28% Similarity=0.431 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+....++|||+|||.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|||..+ .++.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---GTKRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---TTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 455679999999999999999999999999999999999998999999999999999999999999999987 67899
Q ss_pred EEeecc
Q 009356 165 KVRFAD 170 (537)
Q Consensus 165 ~v~~a~ 170 (537)
+|.+++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 998863
No 85
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.3e-17 Score=140.14 Aligned_cols=86 Identities=26% Similarity=0.555 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.|| |.+|+|++++.+|+++|||||+|.+.++|++|| .|+|..| .++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---GDRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---TTEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---CCeEEE
Confidence 44579999999999999999999999997 999999999999999999999999999999999 9999988 678999
Q ss_pred EeeccCCCCCC
Q 009356 166 VRFADGEREHP 176 (537)
Q Consensus 166 v~~a~~~~~~~ 176 (537)
|.++..+....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dng_A 87 VDIAEGRKQDK 97 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecCCCCCC
Confidence 99998765543
No 86
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=142.01 Aligned_cols=80 Identities=29% Similarity=0.433 Sum_probs=75.8
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
..++|||+|||.++|+++|+++|++||.|..|+|++| .+|.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---~gr~l~V~ 94 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL---QSKTIKVS 94 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEE
Confidence 4578999999999999999999999999999999998 5789999999999999999999999999998 89999999
Q ss_pred EccC
Q 009356 258 IADP 261 (537)
Q Consensus 258 ~a~~ 261 (537)
||+|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9975
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=3e-18 Score=149.20 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=88.9
Q ss_pred ccccccCCcccCCCcccccCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEE
Q 009356 56 EPTDFFNGQPMPFIGRKRGFNHPAPDHINDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCF 135 (537)
Q Consensus 56 ~a~~~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aF 135 (537)
-++..++|+.+.+..... ...............++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++||||
T Consensus 4 p~~~~~~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~af 82 (124)
T 2jwn_A 4 PCMQTTHSKMTAGAYTEG-PPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAY 82 (124)
T ss_dssp CCSCCCCCCCCCSCSCCC-SCCSCCHHHHHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEE
T ss_pred chhhhcCCcccCCccCCC-CCCCccccccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEE
Confidence 456677887774431111 1000000011223468999999999999999999999999999999999988999999999
Q ss_pred EEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCC
Q 009356 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174 (537)
Q Consensus 136 V~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 174 (537)
|+|.+.++|++|| .|+|..| .++.|+|.+++....
T Consensus 83 V~f~~~~~a~~A~-~l~g~~~---~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 83 IEFAERNSVDAAV-AMDETVF---RGRTIKVLPKRTNMP 117 (124)
T ss_dssp EEESSHHHHHHHH-TTTTCEE---TTEECEEEESSCCCS
T ss_pred EEECCHHHHHHHH-hcCCCeE---CCeEEEEEECCCCCC
Confidence 9999999999999 8999987 678999999876544
No 88
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=5.2e-18 Score=149.27 Aligned_cols=87 Identities=21% Similarity=0.355 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--EEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCc----eeec
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE--VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH----YIFP 158 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~----~~~~ 158 (537)
.....++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|++||||||+|.+. +|.+||+.|+|. .+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-- 95 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-- 95 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--
Confidence 3456789999999999999999999999999977 99999999999999999999999 999999999998 76
Q ss_pred CCceeEEEeeccCCCCC
Q 009356 159 GEQASIKVRFADGEREH 175 (537)
Q Consensus 159 g~~~~l~v~~a~~~~~~ 175 (537)
.++.|+|.++...+..
T Consensus 96 -~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 -DGKTINVEFAKGSKRD 111 (131)
T ss_dssp -GGCCCCCEECCCSCCC
T ss_pred -CCEEEEEEECCCCCCC
Confidence 6789999999776443
No 89
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=139.02 Aligned_cols=85 Identities=22% Similarity=0.445 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCC-CCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRT-GQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
...++|||+|||.++++++|+++|+.|| |.+|+|++++.+ |+++|||||+|.+.++|++|| .|+|..+ .++.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---TTEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---CCcEEE
Confidence 4569999999999999999999999999 999999999988 999999999999999999999 9999987 678999
Q ss_pred EeeccCCCCCC
Q 009356 166 VRFADGEREHP 176 (537)
Q Consensus 166 v~~a~~~~~~~ 176 (537)
|.++..+....
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99998765543
No 90
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-18 Score=139.11 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
.+.++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|||..+ .++.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---QAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---CEESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---eeEEEee
Confidence 3568999999999999999999999999999999999998999999999999999999999999999987 6778877
Q ss_pred eecc
Q 009356 167 RFAD 170 (537)
Q Consensus 167 ~~a~ 170 (537)
.+++
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 91
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4e-17 Score=137.18 Aligned_cols=87 Identities=31% Similarity=0.497 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|++||+.|+|..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 85 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI---LGKEV 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc---CCCeE
Confidence 445679999999999999999999999999999999999853 3799999999999999999999999987 67999
Q ss_pred EEeeccCCCCCC
Q 009356 165 KVRFADGEREHP 176 (537)
Q Consensus 165 ~v~~a~~~~~~~ 176 (537)
+|.++.....+.
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2cqi_A 86 KVNWATTPSSQK 97 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEECCCCcccc
Confidence 999998765543
No 92
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.4e-17 Score=135.34 Aligned_cols=81 Identities=19% Similarity=0.414 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|+ .+++..+ .++.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~---~g~~i 82 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL---DGRVI 82 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEE---TTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEE---CCEEE
Confidence 3456799999999999999999999999999999999999989999999999999999999999 4577766 66889
Q ss_pred EEeec
Q 009356 165 KVRFA 169 (537)
Q Consensus 165 ~v~~a 169 (537)
+|.++
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98875
No 93
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=141.99 Aligned_cols=88 Identities=20% Similarity=0.356 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 84 ~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
++....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++||+.+ +..+ .++.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l---~g~~ 95 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL---DSKT 95 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE---TTEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC---CCEE
Confidence 34566799999999999999999999999999999999999999999999999999999999999876 4555 5689
Q ss_pred EEEeeccCCCCC
Q 009356 164 IKVRFADGEREH 175 (537)
Q Consensus 164 l~v~~a~~~~~~ 175 (537)
|+|.++..+..+
T Consensus 96 l~V~~a~~~~~~ 107 (109)
T 2rs2_A 96 IDPKVAFPRRAQ 107 (109)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999998766543
No 94
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=141.99 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||+.|++ .+ .++.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~---~g~~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II---DGRKA 88 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE---TTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC---CCEEE
Confidence 445679999999999999999999999999999999999999999999999999999999999999998 55 56899
Q ss_pred EEeeccCCC
Q 009356 165 KVRFADGER 173 (537)
Q Consensus 165 ~v~~a~~~~ 173 (537)
+|.++....
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999997653
No 95
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=9.4e-18 Score=153.69 Aligned_cols=126 Identities=23% Similarity=0.284 Sum_probs=78.7
Q ss_pred cccchhhcccccccccCCcccCCCccc--ccCCCC----------------CCCCCCCCCCCCEEEEcCCCCCCCHHHHH
Q 009356 46 RHYQYDQMSSEPTDFFNGQPMPFIGRK--RGFNHP----------------APDHINDSGIPAKLYVAPVPRTATEEDIR 107 (537)
Q Consensus 46 ~~~~~~e~A~~a~~~~ng~~l~~~~~~--~~~~~~----------------~~~~~~~~~~~~~LfVgnLp~~~te~~L~ 107 (537)
.+|...++|+.++..++++.....+.. ..+... ...........++|||+|||.++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 467777888888888888766533322 111100 00011123456789999999999999999
Q ss_pred HHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCC
Q 009356 108 PLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGERE 174 (537)
Q Consensus 108 ~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 174 (537)
++|+.||.|..|.|++++.+|.++|||||+|.+.++|++||+.|||..| .++.|+|.++..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999987 678999999876543
No 96
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=136.05 Aligned_cols=83 Identities=22% Similarity=0.428 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCC-ccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQ-QQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
..++|||+|||.++++++|+++|+.||.|.+|+|++++.++. ++|||||+|.+.++|++|++.|||..+ .++.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---DGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---CCeEEEE
Confidence 358999999999999999999999999999999999987766 999999999999999999999999988 6789999
Q ss_pred eeccCCC
Q 009356 167 RFADGER 173 (537)
Q Consensus 167 ~~a~~~~ 173 (537)
.++...+
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9987654
No 97
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=140.35 Aligned_cols=88 Identities=27% Similarity=0.453 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++||+. ++..| .++.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---~g~~l 87 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---DGRNI 87 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---TTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---CCEEE
Confidence 445679999999999999999999999999999999999998999999999999999999999988 98877 67899
Q ss_pred EEeeccCCCCCC
Q 009356 165 KVRFADGEREHP 176 (537)
Q Consensus 165 ~v~~a~~~~~~~ 176 (537)
+|.++..+....
T Consensus 88 ~V~~a~~~~~~~ 99 (105)
T 2dh8_A 88 DPKPCTPRGMQP 99 (105)
T ss_dssp BCCCSCCSSCCT
T ss_pred EEEEccCCCCCC
Confidence 999998765543
No 98
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=141.23 Aligned_cols=87 Identities=22% Similarity=0.278 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCce-eecCCce
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEE-HGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY-IFPGEQA 162 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~-~~~g~~~ 162 (537)
+....++|||+|||.++++++|+++|+. ||.|.+|+|++++ +|+++|||||+|.+.++|++||+.|+|.. + .++
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---~g~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL---GSK 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---SSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc---CCE
Confidence 3456789999999999999999999999 9999999999998 99999999999999999999999999988 6 568
Q ss_pred eEEEeeccCCCCC
Q 009356 163 SIKVRFADGEREH 175 (537)
Q Consensus 163 ~l~v~~a~~~~~~ 175 (537)
.|+|.++..+..+
T Consensus 81 ~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 81 PVRLSVAIPKASR 93 (104)
T ss_dssp CCCCCBCCCCCSC
T ss_pred eEEEEEccCCCcC
Confidence 8999998765543
No 99
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=151.89 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHG--NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
..++|||+|||+++++++|+++|+.|| .|.+|+|++|+.+|++||||||+|.+.++|++||+.|+|..| .++.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL---NGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEeE
Confidence 458999999999999999999999999 999999999999999999999999999999999999999988 679999
Q ss_pred EeeccC
Q 009356 166 VRFADG 171 (537)
Q Consensus 166 v~~a~~ 171 (537)
|.++..
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 999864
No 100
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.5e-17 Score=135.79 Aligned_cols=80 Identities=26% Similarity=0.408 Sum_probs=75.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
.++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|+ .|+|..+ .++.|+|.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---~g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---RGRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---TTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---CCcEEEEEE
Confidence 489999999999999999999999999999999999989999999999999999999999 9999987 679999999
Q ss_pred ccCC
Q 009356 169 ADGE 172 (537)
Q Consensus 169 a~~~ 172 (537)
++..
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8764
No 101
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=138.01 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++. |+++|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL---YGRPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE---CCCEE
Confidence 344569999999999999999999999999999999999984 99999999999999999999999999987 67899
Q ss_pred EEeeccC
Q 009356 165 KVRFADG 171 (537)
Q Consensus 165 ~v~~a~~ 171 (537)
+|.+++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9998753
No 102
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=4.8e-17 Score=141.59 Aligned_cols=86 Identities=21% Similarity=0.353 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL---DGRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES---SSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE---CCcEE
Confidence 34567899999999999999999999999999999999998 999999999999999999999999999987 67899
Q ss_pred EEeeccCCCC
Q 009356 165 KVRFADGERE 174 (537)
Q Consensus 165 ~v~~a~~~~~ 174 (537)
+|.++.....
T Consensus 107 ~V~~a~~~~~ 116 (124)
T 2kt5_A 107 DIQLVASQID 116 (124)
T ss_dssp EEEEECCTTC
T ss_pred EEEEeCCCCC
Confidence 9999976543
No 103
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=138.90 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcC--ceeecCCce
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG--HYIFPGEQA 162 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g--~~~~~g~~~ 162 (537)
+....++|||+|||+++||++|+++|++||.|++|+|+++ ||||||+|.+.++|++|++.|++ ..+ .++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l---~Gr 82 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQ 82 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE---TTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE---CCE
Confidence 3456799999999999999999999999999999999986 58999999999999999998875 455 568
Q ss_pred eEEEeeccCCCCCC
Q 009356 163 SIKVRFADGEREHP 176 (537)
Q Consensus 163 ~l~v~~a~~~~~~~ 176 (537)
.|+|.+++.+....
T Consensus 83 ~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 83 PIYIQFSNHKELKT 96 (105)
T ss_dssp ECCBCCCSSSSCCC
T ss_pred EEEEEEcCCCCCCc
Confidence 99999998765443
No 104
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.3e-17 Score=135.21 Aligned_cols=86 Identities=26% Similarity=0.450 Sum_probs=77.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|++||+.|+|..| .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV---EGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 445679999999999999999999999999999999999863 3899999999999999999999999987 67999
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.++..+...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99999876544
No 105
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=4e-18 Score=150.77 Aligned_cols=125 Identities=25% Similarity=0.385 Sum_probs=82.1
Q ss_pred eEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEE
Q 009356 133 YCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFI 212 (537)
Q Consensus 133 ~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i 212 (537)
|+|++|.+...+..|+..++|..... +. ...+.. ........++|||+|||.++++++|+++|+.||.|..|.|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g---~~-~~~~~~--~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMG---RG-SMSYGR--PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp ---------------------------------CCSCC--SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred cccccccCCCchhhhhhhccCCCCCC---CC-CCCcCC--CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 67888999999999999998865421 11 222222 2223445789999999999999999999999999999999
Q ss_pred Eee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCCCCC
Q 009356 213 VRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 213 ~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
+.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.|++++..+.
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRELRVQMARYGRPPD 131 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---SSSCCEEEECCCCCCCT
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEECCCCCCCc
Confidence 998 5789999999999999999999999999997 89999999998765443
No 106
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=142.41 Aligned_cols=82 Identities=20% Similarity=0.349 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|| .|+|..| .++.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---LGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---CCeEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999 9999987 6789999
Q ss_pred eeccCC
Q 009356 167 RFADGE 172 (537)
Q Consensus 167 ~~a~~~ 172 (537)
.++..+
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 998654
No 107
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=139.31 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++||+.|+|..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL---FDRPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe---CCCEE
Confidence 34557899999999999999999999999999999999998 699999999999999999999999999988 67899
Q ss_pred EEeeccCCCC
Q 009356 165 KVRFADGERE 174 (537)
Q Consensus 165 ~v~~a~~~~~ 174 (537)
+|.+++....
T Consensus 87 ~v~~a~~~~~ 96 (114)
T 2do0_A 87 HVKMDERALP 96 (114)
T ss_dssp EEEECSCCCC
T ss_pred EEEEcccCCC
Confidence 9999875443
No 108
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=140.38 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++|+++|+++|+.||.|.+|+|++|+. |++||||||+|.+.++|++||+ ++|..+ .++.|+|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~---~gr~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY---KETDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC---TTTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE---CCEEEEE
Confidence 3458999999999999999999999999999999999986 9999999999999999999997 898877 5688888
Q ss_pred eeccC
Q 009356 167 RFADG 171 (537)
Q Consensus 167 ~~a~~ 171 (537)
.++..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 87653
No 109
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=2.9e-17 Score=139.00 Aligned_cols=81 Identities=22% Similarity=0.369 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++||+.|+|..+ .++.|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 101 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL---DGRPMN 101 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe---CCcEEE
Confidence 4567999999999999999999999999999999999998 999999999999999999999999999988 678999
Q ss_pred Eeecc
Q 009356 166 VRFAD 170 (537)
Q Consensus 166 v~~a~ 170 (537)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 110
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=2.7e-17 Score=135.15 Aligned_cols=83 Identities=25% Similarity=0.356 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|+.||.|..|+|+++ +|+++|||||+|.+.++|++|++.|+|..+ .++.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL---SGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB---TTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 45689999999999999999999999999999999985 899999999999999999999999999987 6789999
Q ss_pred eeccCCCC
Q 009356 167 RFADGERE 174 (537)
Q Consensus 167 ~~a~~~~~ 174 (537)
.+++....
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99877654
No 111
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=8.4e-18 Score=132.69 Aligned_cols=75 Identities=27% Similarity=0.436 Sum_probs=70.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009356 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
+|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|++|++ |+|..+ .++.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---CCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999996 999887 6788888875
No 112
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=6.5e-18 Score=178.01 Aligned_cols=157 Identities=17% Similarity=0.244 Sum_probs=110.9
Q ss_pred HHHHHhhccCCeEEEEecc----CC-CCCCccceE--EEEEccHHHHHHHHHHhcCceeecC------------CceeEE
Q 009356 105 DIRPLFEEHGNVIEVVLPK----DK-RTGQQQGYC--FVKFTIFEEAGNAIRALNGHYIFPG------------EQASIK 165 (537)
Q Consensus 105 ~L~~~F~~~G~I~~v~i~~----d~-~tg~~kG~a--FV~F~~~e~A~~Ai~~l~g~~~~~g------------~~~~l~ 165 (537)
.|..+|..+|+|..|..+. ++ .+....|++ |+.|....++..++..++....... ....+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3789999999998874332 21 122233444 8888876655544432222111000 000111
Q ss_pred EeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCc
Q 009356 166 VRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGT 244 (537)
Q Consensus 166 v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~ 244 (537)
+..............++|||+||+..+|+++|+++|+.||.|+.|.|+.+ .++.++|||||+|.+.++|.+||..|||.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 11111122222345689999999999999999999999999999999998 58889999999999999999999999999
Q ss_pred eEecCCCceEEEEEccCCCC
Q 009356 245 FTMRGSDQPLVVRIADPKKP 264 (537)
Q Consensus 245 ~~~~g~g~~l~V~~a~~~~~ 264 (537)
.| +|+.|.|.|+..+..
T Consensus 168 ~i---~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 168 KI---DGRRVLVDVERGRTV 184 (437)
T ss_pred EE---CCEEEEEEEeCCCCC
Confidence 98 899999999987643
No 113
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.4e-17 Score=135.17 Aligned_cols=86 Identities=26% Similarity=0.488 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|++||+ ++..+ .++.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~---~g~~l 85 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI---DGRWC 85 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE---TTEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee---CCeEE
Confidence 44567899999999999999999999999999999999999899999999999999999999997 45555 56899
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.++..+...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999876543
No 114
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=139.86 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCC-CCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDK-RTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
.....++|||+|||.++++++|+++|+.|| |.+|+|++++ .+|+++|||||+|.+.++|++|| .|+|..+ .++.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~---~g~~ 89 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNRR 89 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---TTBC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---CCeE
Confidence 345679999999999999999999999999 9999999998 68999999999999999999999 9999987 6788
Q ss_pred EEEeeccCC
Q 009356 164 IKVRFADGE 172 (537)
Q Consensus 164 l~v~~a~~~ 172 (537)
|+|.+++.+
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999998754
No 115
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=138.27 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|+.||.|..++++.++.+|+++|||||+|.+.++|++||+.|+|..+ .++.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V 89 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVKL 89 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---CCeEEEE
Confidence 4468999999999999999999999999999898898888999999999999999999999999999987 6799999
Q ss_pred eeccCC
Q 009356 167 RFADGE 172 (537)
Q Consensus 167 ~~a~~~ 172 (537)
.++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998654
No 116
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=3.5e-17 Score=142.80 Aligned_cols=86 Identities=34% Similarity=0.458 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|++||+.|+|..| .++.|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCeEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999987 668899
Q ss_pred EeeccCCCC
Q 009356 166 VRFADGERE 174 (537)
Q Consensus 166 v~~a~~~~~ 174 (537)
|.++..+..
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999875543
No 117
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=138.37 Aligned_cols=86 Identities=21% Similarity=0.350 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEec-cCCCCCCccceEEEEEccHHHHHHHHHHhc-C-ceeecCCce
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGN-VIEVVLP-KDKRTGQQQGYCFVKFTIFEEAGNAIRALN-G-HYIFPGEQA 162 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~-~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~-g-~~~~~g~~~ 162 (537)
...++|||+|||.++++++|+++|+.||. |.+|+|+ .++.+|+++|||||+|.+.++|++|++.|+ | ..+ .++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~---~g~ 82 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL---WGH 82 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB---TTB
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee---cCC
Confidence 34689999999999999999999999998 9999999 888899999999999999999999999995 4 655 568
Q ss_pred eEEEeeccCCCCC
Q 009356 163 SIKVRFADGEREH 175 (537)
Q Consensus 163 ~l~v~~a~~~~~~ 175 (537)
.|+|.+++.+...
T Consensus 83 ~l~V~~a~~~~~~ 95 (109)
T 2dis_A 83 QIAVDWAEPEIDV 95 (109)
T ss_dssp CCEEEESCSSCST
T ss_pred eEEEEEcCCCCCc
Confidence 9999999876543
No 118
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=140.21 Aligned_cols=84 Identities=32% Similarity=0.529 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF---SGRALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---SSSCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCcEEEEE
Confidence 458999999999999999999999999999999999998999999999999999999999999999987 67899999
Q ss_pred eccCCCC
Q 009356 168 FADGERE 174 (537)
Q Consensus 168 ~a~~~~~ 174 (537)
++..+..
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9876543
No 119
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.1e-17 Score=134.33 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 88 IPAKLYVAPVPRTATEEDIR----PLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
..++|||+|||.++++++|+ ++|++||.|.+|+|++|+.+ ||||||+|.+.++|++||+.|||..+ .++.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~---~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI---GSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE---TTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE---CCeE
Confidence 45899999999999999999 99999999999999999755 89999999999999999999999988 6799
Q ss_pred EEEeeccCCCC
Q 009356 164 IKVRFADGERE 174 (537)
Q Consensus 164 l~v~~a~~~~~ 174 (537)
|+|.+++....
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999976543
No 120
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=5.3e-17 Score=147.15 Aligned_cols=87 Identities=29% Similarity=0.497 Sum_probs=80.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|+.|+|++++.+++++|||||+|.+.++|++||+.|++..| .++.|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l 111 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL---DDRII 111 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---TTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 345679999999999999999999999999999999999999999999999999999999999999999988 67999
Q ss_pred EEeeccCCCC
Q 009356 165 KVRFADGERE 174 (537)
Q Consensus 165 ~v~~a~~~~~ 174 (537)
+|.++.....
T Consensus 112 ~V~~a~~~~~ 121 (156)
T 1h2v_Z 112 RTDWDAGFKE 121 (156)
T ss_dssp EEEEESCCCT
T ss_pred EEEECCCCCC
Confidence 9999976543
No 121
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=6.1e-17 Score=143.72 Aligned_cols=82 Identities=24% Similarity=0.472 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 135 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTI 135 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---TTEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 445679999999999999999999999999999999999998999999999999999999999999999987 67899
Q ss_pred EEeec
Q 009356 165 KVRFA 169 (537)
Q Consensus 165 ~v~~a 169 (537)
+|.++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 122
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-16 Score=134.58 Aligned_cols=85 Identities=20% Similarity=0.363 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|..|+|..+ ++++|||||+|.+.++|++||+.|++..| .++.|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 91 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY---DGYRL 91 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 3446799999999999999999999999999999999664 56899999999999999999999999987 67899
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.+++..+..
T Consensus 92 ~V~~a~~~~~~ 102 (109)
T 1x4a_A 92 RVEFPRSGRGT 102 (109)
T ss_dssp EEECCCCCCCC
T ss_pred EEEEcccCCCC
Confidence 99999876544
No 123
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=133.48 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc--CceeecCCc
Q 009356 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN--GHYIFPGEQ 161 (537)
Q Consensus 84 ~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~--g~~~~~g~~ 161 (537)
....++++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++.|+ +..+ .+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~---~G 80 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL---RN 80 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE---TT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE---CC
Confidence 44556799999999999999999999999999999999876 6899999999999999999875 4455 57
Q ss_pred eeEEEeeccCCCCC
Q 009356 162 ASIKVRFADGEREH 175 (537)
Q Consensus 162 ~~l~v~~a~~~~~~ 175 (537)
+.|+|.+++.+...
T Consensus 81 r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 81 QPIYIQYSNHKELK 94 (101)
T ss_dssp EECEEEECSCSSCC
T ss_pred cEEEEEEcCcccCc
Confidence 99999999876544
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=3.7e-17 Score=131.00 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
.+..||||||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|++|++.||+..+ .++.|+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l---~gr~I~V~ 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL---ANTTIFAE 76 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE---TTEEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE---CCcEEEEE
Confidence 357899999999999999999999999999999866 579999999999999999999999988 77999998
Q ss_pred ec
Q 009356 168 FA 169 (537)
Q Consensus 168 ~a 169 (537)
++
T Consensus 77 ~A 78 (89)
T 2wbr_A 77 SP 78 (89)
T ss_dssp CC
T ss_pred EC
Confidence 87
No 125
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=134.16 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
...++++|||+|||.++|+++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.|++..+.. .++.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i 89 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYI-AGHPA 89 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEE-TTEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCcee-CCcEE
Confidence 3456789999999999999999999999999999999864 5899999999999999999999876321 46899
Q ss_pred EEeeccCCC
Q 009356 165 KVRFADGER 173 (537)
Q Consensus 165 ~v~~a~~~~ 173 (537)
+|.+++.++
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999997653
No 126
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=132.40 Aligned_cols=76 Identities=22% Similarity=0.435 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009356 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
++|||+|||.++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.++ ..+ .++.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~---~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL---DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC---SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc---CCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999888 655 5678888875
No 127
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=136.84 Aligned_cols=87 Identities=21% Similarity=0.459 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecC-----
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG----- 159 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g----- 159 (537)
.....++|||+|||.++++++|+++|+.||.|..|+|++++ +|+++|||||+|.+.++|++||+.|||..+...
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34456899999999999999999999999999999999998 999999999999999999999999999987321
Q ss_pred CceeEEEeeccCC
Q 009356 160 EQASIKVRFADGE 172 (537)
Q Consensus 160 ~~~~l~v~~a~~~ 172 (537)
.++.|+|.+++..
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 3578999998754
No 128
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=138.14 Aligned_cols=84 Identities=25% Similarity=0.460 Sum_probs=76.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 84 ~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
......++|||+|||.++++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++|++.|+|..+ .++.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~---~g~~ 98 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV---EGRK 98 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE---TTEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE---CCEE
Confidence 345567999999999999999999999999999999999985 45999999999999999999999999987 6799
Q ss_pred EEEeeccCC
Q 009356 164 IKVRFADGE 172 (537)
Q Consensus 164 l~v~~a~~~ 172 (537)
|+|.++..+
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998754
No 129
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.4e-17 Score=137.72 Aligned_cols=80 Identities=24% Similarity=0.240 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||.++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|++||+.|||..+ .++.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~l~v~ 90 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVKLS 90 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---CCcEEEEE
Confidence 458999999999999999999999999999999999988999999999999999999999999999988 67899998
Q ss_pred ecc
Q 009356 168 FAD 170 (537)
Q Consensus 168 ~a~ 170 (537)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 875
No 130
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=131.62 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|++||+ |+|..+ .++.|+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---~gr~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM---GGRYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---TTEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee---CCcEEE
Confidence 3456899999999999999999999999 9999999999 699999999999999999999998 999988 678999
Q ss_pred EeeccCCC
Q 009356 166 VRFADGER 173 (537)
Q Consensus 166 v~~a~~~~ 173 (537)
|.++..+.
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99987653
No 131
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=136.46 Aligned_cols=83 Identities=20% Similarity=0.459 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeec
Q 009356 85 DSGIPAKLYVAPVPRTA------TEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP 158 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~ 158 (537)
.....++|||+|||.++ ++++|+++|++||.|.+|+|++ .+|+++|||||+|.+.++|.+||+.|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-- 86 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL-- 86 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCccc--
Confidence 34457899999999999 7899999999999999999983 5899999999999999999999999999987
Q ss_pred CCce-eEEEeeccCC
Q 009356 159 GEQA-SIKVRFADGE 172 (537)
Q Consensus 159 g~~~-~l~v~~a~~~ 172 (537)
.++ .|+|.++...
T Consensus 87 -~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 -DKQHTFRVNLFTDF 100 (105)
T ss_dssp -STTCEEEEECSCCC
T ss_pred -CCCceEEEEEcchH
Confidence 566 8999998654
No 132
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=8.8e-18 Score=140.69 Aligned_cols=86 Identities=20% Similarity=0.311 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.. .++.++.+|+++|||||+|.+.++|++||+ |+|..+ .++.|
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---~g~~l 87 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---FGNEI 87 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---TTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---CCcEE
Confidence 4456789999999999999999999999999988 778887889999999999999999999998 999987 67899
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.++..+..+
T Consensus 88 ~V~~a~~~~~~ 98 (101)
T 1fj7_A 88 KLEKPKGRDGT 98 (101)
T ss_dssp EEECCSCCCCS
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 133
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7e-17 Score=138.78 Aligned_cols=85 Identities=25% Similarity=0.428 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|++||+. ++..| .++.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI---DGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE---TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE---CCEEEEE
Confidence 3469999999999999999999999999999999999999999999999999999999999976 88877 6799999
Q ss_pred eeccCCCCC
Q 009356 167 RFADGEREH 175 (537)
Q Consensus 167 ~~a~~~~~~ 175 (537)
.++..+...
T Consensus 101 ~~a~~~~~~ 109 (116)
T 1x4b_A 101 KRAVAREES 109 (116)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCccC
Confidence 999876554
No 134
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=7.7e-18 Score=137.86 Aligned_cols=80 Identities=28% Similarity=0.441 Sum_probs=72.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009356 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.+ |++|++.|+|..+ .++.|+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---MGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---SSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---CCeEEEEEEc
Confidence 68999999999999999999999999999999999999999999999999999 9999999999987 6788999998
Q ss_pred cCCC
Q 009356 170 DGER 173 (537)
Q Consensus 170 ~~~~ 173 (537)
....
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 135
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=137.46 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=78.1
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
.+.++|||+||++++++++|+++|++||.|++|.|++| .+++++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---~gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---MGNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEE
Confidence 35679999999999999999999999999999999999 5699999999999999999999999999998 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.++..+..
T Consensus 81 ~~a~~~~~ 88 (110)
T 3s8s_A 81 QLDIKGQQ 88 (110)
T ss_dssp EECSTTHH
T ss_pred EECCCCcH
Confidence 99976543
No 136
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=134.23 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE-VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
....++|||+|||+++++++|+++|+.||.|.+ |+|+++ .+|+++|||||+|.+.++|++||+. ++..+ .++.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~---~gr~i 86 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI---GHRYI 86 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS---SSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh---CCcEE
Confidence 345689999999999999999999999999987 889998 6999999999999999999999976 88876 56789
Q ss_pred EEeeccCCC
Q 009356 165 KVRFADGER 173 (537)
Q Consensus 165 ~v~~a~~~~ 173 (537)
+|.++..+.
T Consensus 87 ~v~~~~~~~ 95 (104)
T 1wg5_A 87 EIFKSSRAE 95 (104)
T ss_dssp EEEEECTTT
T ss_pred EEEECCHHH
Confidence 998876543
No 137
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.4e-17 Score=134.61 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCce--eecCCce
Q 009356 86 SGIPAKLYVAPVPR-TATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY--IFPGEQA 162 (537)
Q Consensus 86 ~~~~~~LfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~--~~~g~~~ 162 (537)
..++++|||+|||+ ++++++|+++|++||.|.+|+|++++ |||||+|.+.++|++||+.|++.. + .++
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr 82 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALV---FGK 82 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEE---TTE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceE---CCc
Confidence 34678999999999 99999999999999999999998864 799999999999999999998753 4 579
Q ss_pred eEEEeeccCCCC
Q 009356 163 SIKVRFADGERE 174 (537)
Q Consensus 163 ~l~v~~a~~~~~ 174 (537)
.|+|.+++..+.
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 1x4d_A 83 PVRVHLSQKYKR 94 (102)
T ss_dssp ECEEEEECCCTT
T ss_pred EEEEEECCCCCC
Confidence 999999986544
No 138
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=136.61 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcC--ceeecCCcee
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG--HYIFPGEQAS 163 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g--~~~~~g~~~~ 163 (537)
..++++|||+|||++++|++|+++|++||.|++|+|+++ ||||||+|.+.++|++|++.|++ ..+ .++.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l---~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB---TTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE---CCeE
Confidence 345789999999999999999999999999999999986 58999999999999999999985 344 5689
Q ss_pred EEEeeccCCCCCC
Q 009356 164 IKVRFADGEREHP 176 (537)
Q Consensus 164 l~v~~a~~~~~~~ 176 (537)
|+|.+++.+....
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998765543
No 139
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=133.93 Aligned_cols=84 Identities=12% Similarity=0.182 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
...++++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++.|++..+.. .++.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i-~Gr~l 83 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI-AGQQA 83 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS-SSSBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE-CCEEE
Confidence 3456789999999999999999999999999999999875 5899999999999999999998654211 56899
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.+++.+...
T Consensus 84 ~V~~a~~~~~~ 94 (104)
T 1wex_A 84 FFNYSTSKRIT 94 (104)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCcccc
Confidence 99999876543
No 140
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=133.34 Aligned_cols=86 Identities=30% Similarity=0.482 Sum_probs=80.1
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+||+.++++++|+++|++||.|..|.|+.+ ++..+|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 87 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV---ATKPLYV 87 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEe---CCcEEEE
Confidence 456789999999999999999999999999999999998 888999999999999999999999999998 8999999
Q ss_pred EEccCCCCCC
Q 009356 257 RIADPKKPRT 266 (537)
Q Consensus 257 ~~a~~~~~~~ 266 (537)
.|+.++..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2d9p_A 88 ALAQRKEERQ 97 (103)
T ss_dssp EECSSCCCCC
T ss_pred EEecccccCC
Confidence 9999876544
No 141
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.5e-17 Score=138.65 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNV-IEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
....++|||+|||+++++++|+++|+.||.| ..|+|++|+ +|+++|||||+|.+.++|++||+. ++..| .++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL---NGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE---TTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc---CCeEE
Confidence 4456999999999999999999999999999 899999998 999999999999999999999966 98877 67999
Q ss_pred EEeeccCC
Q 009356 165 KVRFADGE 172 (537)
Q Consensus 165 ~v~~a~~~ 172 (537)
+|.++..+
T Consensus 87 ~v~~a~~~ 94 (114)
T 2cpy_A 87 FVHVVTLE 94 (114)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998654
No 142
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=132.31 Aligned_cols=84 Identities=27% Similarity=0.503 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.| +++++ .+|+++|||||+|.+.++|++||+.|+|..+ .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 83 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI---EGRAI 83 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---TTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---CCeEE
Confidence 34567999999999999999999999999976 67777 5899999999999999999999999999988 67999
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.+++.+...
T Consensus 84 ~v~~a~~~~~~ 94 (101)
T 2fc9_A 84 RLELQGPRGSP 94 (101)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 143
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=135.77 Aligned_cols=84 Identities=23% Similarity=0.378 Sum_probs=74.8
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCC-CeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYG-HIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G-~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
+++|||+|||.++|+++|+++|++|| .|.+|+|++| .+|.++|||||+|.+.++|.+|++.+++...+ +|+.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 36899999999999999999999999 7999999998 57899999999999999999999988654433 78999999
Q ss_pred EccCCCCC
Q 009356 258 IADPKKPR 265 (537)
Q Consensus 258 ~a~~~~~~ 265 (537)
|+.++...
T Consensus 79 ~a~~~~~~ 86 (91)
T 2lxi_A 79 YSDPKPKI 86 (91)
T ss_dssp CCCSCCCC
T ss_pred EcCCCCCC
Confidence 99887543
No 144
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=132.11 Aligned_cols=85 Identities=21% Similarity=0.408 Sum_probs=79.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|||.++++++|+++|++||.|..|.|+.+.++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 90 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI---KENIIKV 90 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES---SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEE
Confidence 4457899999999999999999999999999999999998899999999999999999999999999887 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.|++++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99988654
No 145
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=131.44 Aligned_cols=84 Identities=29% Similarity=0.547 Sum_probs=78.3
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
...++|||+||+.++++++|+++|++||.|..|.|+++ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---AGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---SSSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---CCcEEEE
Confidence 35689999999999999999999999999999999998 5688999999999999999999999999988 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.++.++..
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99988654
No 146
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=136.09 Aligned_cols=85 Identities=28% Similarity=0.510 Sum_probs=79.2
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+||+.++++++|+++|++||.|+.|.|+.+.++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l~V~ 81 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL---HGKAIKVE 81 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC---SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEE
Confidence 346799999999999999999999999999999999998899999999999999999999999999998 89999999
Q ss_pred EccCCCCC
Q 009356 258 IADPKKPR 265 (537)
Q Consensus 258 ~a~~~~~~ 265 (537)
+++.+...
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876543
No 147
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=131.11 Aligned_cols=73 Identities=21% Similarity=0.490 Sum_probs=65.5
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 89 PAKLYVAPVPRTA------TEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 89 ~~~LfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
+++|||+|||.++ ++++|+++|++||.|.+|+|++ .+|+++|||||+|.+.++|++|++.|||..+ .++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL---DKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---SSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCccc---CCc
Confidence 3799999999999 7799999999999999999883 5899999999999999999999999999987 455
Q ss_pred -eEEE
Q 009356 163 -SIKV 166 (537)
Q Consensus 163 -~l~v 166 (537)
.|+|
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 5654
No 148
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=9.4e-17 Score=137.87 Aligned_cols=83 Identities=30% Similarity=0.489 Sum_probs=75.2
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
..+|||+|||.++++++|+++|++||.|.+|+|++|.. .++|||||+|.+.++|.+||+.|+|..+ +|+.|+|.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~---~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEEC
Confidence 46899999999999999999999999999999999853 4799999999999999999999999998 8999999999
Q ss_pred cCCCCCC
Q 009356 260 DPKKPRT 266 (537)
Q Consensus 260 ~~~~~~~ 266 (537)
..+..+.
T Consensus 81 ~~~~~~~ 87 (115)
T 4f25_A 81 KSRKERE 87 (115)
T ss_dssp SCCCC--
T ss_pred CCccccc
Confidence 8765443
No 149
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=136.48 Aligned_cols=83 Identities=14% Similarity=0.289 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeccCCCCC---CccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009356 88 IPAKLYVAPVPRTATEEDIR---PLFEEHGNVIEVVLPKDKRTG---QQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg---~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
..++|||+|||+++++++|+ ++|++||.|.+|+|++++.++ +++|||||+|.+.++|++||+.|||..| .+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---~g 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---DG 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE---TT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE---CC
Confidence 45899999999999999999 999999999999999998754 5669999999999999999999999987 67
Q ss_pred eeEEEeeccCCC
Q 009356 162 ASIKVRFADGER 173 (537)
Q Consensus 162 ~~l~v~~a~~~~ 173 (537)
+.|+|.++..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998764
No 150
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=138.79 Aligned_cols=82 Identities=13% Similarity=0.355 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009356 86 SGIPAKLYVAPVPRTATEEDIR----PLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
..+.++|||+|||+++++++|+ ++|++||.|++|.+.+ +|++||||||+|.+.++|++|++.|||..+ .+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l---~g 99 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF---QG 99 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC---TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe---CC
Confidence 3457899999999999999876 6999999999998754 688999999999999999999999999987 56
Q ss_pred eeEEEeeccCCC
Q 009356 162 ASIKVRFADGER 173 (537)
Q Consensus 162 ~~l~v~~a~~~~ 173 (537)
+.|+|.|+..+.
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 899999997654
No 151
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=9.8e-17 Score=169.02 Aligned_cols=84 Identities=25% Similarity=0.425 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++|+++|+++|+.||.|+.|+|+.++.+|+++|||||+|.+.++|.+||+.|||..| .++.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i---~gr~i~ 175 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI---DGRRVL 175 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE---CCEEEE
Confidence 44568999999999999999999999999999999999998999999999999999999999999999988 678999
Q ss_pred EeeccCC
Q 009356 166 VRFADGE 172 (537)
Q Consensus 166 v~~a~~~ 172 (537)
|.++...
T Consensus 176 V~~a~~~ 182 (437)
T 3pgw_S 176 VDVERGR 182 (437)
T ss_pred EEEeCCC
Confidence 9998754
No 152
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.3e-17 Score=136.32 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||+++|+++|+++|+.||. ++|+|++|+ +|+++|||||+|.+.++|++|| .+++..| .++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANM---QHRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCS---SSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeE---CCcEEE
Confidence 345689999999999999999999999994 599999998 9999999999999999999999 6898877 567888
Q ss_pred EeeccCCC
Q 009356 166 VRFADGER 173 (537)
Q Consensus 166 v~~a~~~~ 173 (537)
|..+....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 88876544
No 153
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=4.7e-16 Score=133.33 Aligned_cols=87 Identities=28% Similarity=0.478 Sum_probs=80.3
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+..+++++|+++|+.||.|..|.|+++ .++.++|||||+|.+.++|.+|++.|+|..+ +|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 88 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQIR 88 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 456789999999999999999999999999999999999 5888999999999999999999999999998 899999
Q ss_pred EEEccCCCCCC
Q 009356 256 VRIADPKKPRT 266 (537)
Q Consensus 256 V~~a~~~~~~~ 266 (537)
|.|++++..+.
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99999875543
No 154
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=2.6e-16 Score=132.56 Aligned_cols=90 Identities=40% Similarity=0.652 Sum_probs=80.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+||+.++++++|+++|+.||.|..|.|+.+.++.++|||||+|.+.++|.+|++.|||..+..+.++.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999874222399999
Q ss_pred EEccCCCCCC
Q 009356 257 RIADPKKPRT 266 (537)
Q Consensus 257 ~~a~~~~~~~ 266 (537)
.|++.+..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876543
No 155
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=3.9e-17 Score=128.74 Aligned_cols=75 Identities=27% Similarity=0.536 Sum_probs=68.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeec
Q 009356 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFA 169 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 169 (537)
+|||+|||.++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++ +++..+ .++.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~---~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNV---GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCB---TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeE---CCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 577766 5677777664
No 156
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=9.9e-17 Score=138.40 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGN---VIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
....++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++||+ |++..| .++
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr 88 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM---GHR 88 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE---TTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE---CCe
Confidence 345689999999999999999999999998 89999999985 9999999999999999999997 999887 678
Q ss_pred eEEEeeccC
Q 009356 163 SIKVRFADG 171 (537)
Q Consensus 163 ~l~v~~a~~ 171 (537)
.|+|.++..
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999988753
No 157
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=132.33 Aligned_cols=87 Identities=34% Similarity=0.527 Sum_probs=80.3
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|++||.|+.|.|+.+ .++..+|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 456789999999999999999999999999999999998 6788999999999999999999999999998 899999
Q ss_pred EEEccCCCCCC
Q 009356 256 VRIADPKKPRT 266 (537)
Q Consensus 256 V~~a~~~~~~~ 266 (537)
|.|+.++..+.
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2cqb_A 86 VNLAKPMRIKE 96 (102)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99999876443
No 158
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=7.2e-17 Score=142.46 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGN---VIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |++||||||+|.+.++|++||+ |+|..| .++
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l---~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM---GHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES---SSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE---CCE
Confidence 345689999999999999999999999999 89999999986 9999999999999999999998 999887 678
Q ss_pred eEEEeeccC
Q 009356 163 SIKVRFADG 171 (537)
Q Consensus 163 ~l~v~~a~~ 171 (537)
.|+|.++..
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999988753
No 159
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=3e-16 Score=134.55 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=79.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|++.||+..+ +|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---GMKRLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 4456899999999999999999999999999999999994 889999999999999999999999999998 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.|++++..+
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999877543
No 160
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=1.3e-16 Score=134.61 Aligned_cols=89 Identities=28% Similarity=0.546 Sum_probs=81.4
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|||..++.+.++.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 445689999999999999999999999999999999998 5688999999999999999999999999987777789999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.++..+..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999986543
No 161
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.6e-17 Score=138.60 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
..+.++|||+|||.++++++|+++|+.||.|..+.+..+..+|+++|||||+|.+.++|++||+.|+|..+ .++.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL---YGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC---SSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe---CCcEEE
Confidence 44679999999999999999999999999984443333333889999999999999999999999999987 678999
Q ss_pred EeeccCCCCCC
Q 009356 166 VRFADGEREHP 176 (537)
Q Consensus 166 v~~a~~~~~~~ 176 (537)
|.++..+..+.
T Consensus 99 v~~a~~~~~~~ 109 (115)
T 2cpx_A 99 IEFGKNKKQRS 109 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEccCCCCCC
Confidence 99998776543
No 162
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.4e-16 Score=131.80 Aligned_cols=85 Identities=29% Similarity=0.386 Sum_probs=79.1
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+||+.++++++|+++|++||.|..|.|+.+.++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 88 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL---FDRPMHV 88 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe---CCCEEEE
Confidence 3457899999999999999999999999999999999998899999999999999999999999999998 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.+++....
T Consensus 89 ~~a~~~~~ 96 (114)
T 2do0_A 89 KMDERALP 96 (114)
T ss_dssp EECSCCCC
T ss_pred EEcccCCC
Confidence 99986543
No 163
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=138.78 Aligned_cols=86 Identities=34% Similarity=0.492 Sum_probs=79.3
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|+.||.|+.|.|+++ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---LNKRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---SSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 345689999999999999999999999999999999999 5688999999999999999999999999987 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.+++.+..+
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999987544
No 164
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=127.31 Aligned_cols=79 Identities=33% Similarity=0.485 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|+ +|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 73 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL---HGVNIN 73 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC---SSCBCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc---CCcEEE
Confidence 4457999999999999999999999999999999997 47999999999999999999999887 678999
Q ss_pred EeeccCCCCC
Q 009356 166 VRFADGEREH 175 (537)
Q Consensus 166 v~~a~~~~~~ 175 (537)
|.++..+...
T Consensus 74 v~~a~~~~~~ 83 (90)
T 2dnq_A 74 VEASKNKSKA 83 (90)
T ss_dssp EECSSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876554
No 165
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=2.5e-16 Score=126.58 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=75.9
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
++|||+|||.++++++|+++|+.||.|..+.++++ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee---CCcEEEEEec
Confidence 57999999999999999999999999999999999 6788999999999999999999999999998 8999999999
Q ss_pred cCCC
Q 009356 260 DPKK 263 (537)
Q Consensus 260 ~~~~ 263 (537)
.++.
T Consensus 79 ~~~~ 82 (83)
T 3md1_A 79 AKLE 82 (83)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 8764
No 166
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=131.59 Aligned_cols=85 Identities=25% Similarity=0.388 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.|+ .|++++++.+++++|||||+|.+.++|++||+.|+|..| .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 84 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---DGNKV 84 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence 345679999999999999999999999874 678888888999999999999999999999999999987 67899
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.+++.+...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2fc8_A 85 TLDWAKPKGEG 95 (102)
T ss_dssp EEEECCCCCSS
T ss_pred EEEEecCCCCC
Confidence 99999876554
No 167
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=1.4e-16 Score=145.94 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=77.7
Q ss_pred EEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCC------------------CCCCCCCCCcccccCCcCCCHHHH
Q 009356 136 VKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGER------------------EHPVAPPDKLYVGCLSKQTSKKEI 197 (537)
Q Consensus 136 V~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~------------------~~~~~~~~~l~V~nl~~~~te~~L 197 (537)
.+|.+.++|+.|+..|++... ..+++.+...+..... .......++|||+||+..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~-~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAK-HRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccc-cccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 789999999999999988654 2234444444432111 011233567999999999999999
Q ss_pred HHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCCCCC
Q 009356 198 EEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKKPRT 266 (537)
Q Consensus 198 ~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~~~~~~~ 266 (537)
+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+||+.|||..+ +|+.|.|.|+..+..+.
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEESEECC---
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEEEecCCCCCC
Confidence 999999999999999998 6888999999999999999999999999998 89999999998765443
No 168
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=131.40 Aligned_cols=85 Identities=28% Similarity=0.525 Sum_probs=79.2
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEE-EEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI-FIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v-~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
...++|||+|||.++++++|+++|++||.|..+ .|+++ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 356899999999999999999999999999999 99998 7889999999999999999999999999998 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.|+.++..+
T Consensus 80 v~~a~~~~~~ 89 (96)
T 1x5t_A 80 VSYAFKKDSK 89 (96)
T ss_dssp EEESCCCCCC
T ss_pred EEEecccCCC
Confidence 9999887544
No 169
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=9.8e-17 Score=154.73 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHG--NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
..++|||+|||+++|+++|+++|+.|| .|++|+|++|+.+|++||||||+|.+.++|++||+.|||..| .++.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---TTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---CCEEeE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999988 678999
Q ss_pred EeeccC
Q 009356 166 VRFADG 171 (537)
Q Consensus 166 v~~a~~ 171 (537)
|.++..
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 999854
No 170
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=134.44 Aligned_cols=78 Identities=28% Similarity=0.294 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||+++++++|+++|+.| .|.+|+|++|+ +|+++|||||+|.+.++|++|| .+++..| .++.|+|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLM---IQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEE---TTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeE---CCeEEEEE
Confidence 35799999999999999999999999 89999999997 4999999999999999999999 7999887 67899998
Q ss_pred eccC
Q 009356 168 FADG 171 (537)
Q Consensus 168 ~a~~ 171 (537)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 7753
No 171
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=130.66 Aligned_cols=86 Identities=20% Similarity=0.471 Sum_probs=78.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|++ |++..+ +|+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~l~ 82 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---MGKKVE 82 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---SSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---CCeEEE
Confidence 345689999999999999999999999999999999998 578899999999999999999999 999987 899999
Q ss_pred EEEccCCCCCC
Q 009356 256 VRIADPKKPRT 266 (537)
Q Consensus 256 V~~a~~~~~~~ 266 (537)
|.++.++..+.
T Consensus 83 V~~a~~~~~~~ 93 (99)
T 2dgs_A 83 VKRAEPRDSKS 93 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEECCCCcccC
Confidence 99999875443
No 172
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.9e-16 Score=129.63 Aligned_cols=81 Identities=15% Similarity=0.347 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
.+.++|||+|||.++++++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.|||..+ .+.++.|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~-~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPL-GGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBC-SSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEe-CCCCcEEEE
Confidence 44689999999999999999999999999999999865 68999999999999999999999987 211689999
Q ss_pred eeccCCCC
Q 009356 167 RFADGERE 174 (537)
Q Consensus 167 ~~a~~~~~ 174 (537)
.+++.+..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99977543
No 173
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-17 Score=134.30 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=73.1
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCC--eeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCce----EecCCC
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGH--IEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTF----TMRGSD 251 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~--I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~----~~~g~g 251 (537)
.-.+|||+||++++|+++|+++|++||. |.+|+|++| .+|.+||||||+|.+.++|.+|++.|||.. + +|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i---~G 84 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI---DG 84 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE---TT
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE---CC
Confidence 4578999999999999999999999995 678999999 579999999999999999999999999973 4 78
Q ss_pred ceEEEEEccC
Q 009356 252 QPLVVRIADP 261 (537)
Q Consensus 252 ~~l~V~~a~~ 261 (537)
|+|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999974
No 174
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=131.37 Aligned_cols=86 Identities=33% Similarity=0.521 Sum_probs=79.9
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---DHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---CCcEEE
Confidence 456789999999999999999999999999999999998 5889999999999999999999999999998 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.|+.++..+
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999886543
No 175
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=6.5e-17 Score=137.00 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=73.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGN---VIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
.....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ +++..+ .+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~---~g 81 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM---GQ 81 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS---SS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee---CC
Confidence 3456799999999999999999999999988 89999999986 9999999999999999999997 999876 56
Q ss_pred eeEEEeeccC
Q 009356 162 ASIKVRFADG 171 (537)
Q Consensus 162 ~~l~v~~a~~ 171 (537)
+.|+|.++..
T Consensus 82 r~i~V~~a~~ 91 (107)
T 2lmi_A 82 RYVEVYEINN 91 (107)
T ss_dssp SCCCCEECCH
T ss_pred eEEEEEECCH
Confidence 7888887753
No 176
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.7e-16 Score=131.59 Aligned_cols=83 Identities=16% Similarity=0.482 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009356 86 SGIPAKLYVAPVPRTATEEDIR----PLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
..+.++|||+|||.++++++|+ ++|+.||.|.+|++++ +|+++|||||+|.+.++|++|++.|+|..+ .+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g 78 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF---YD 78 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE---TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE---CC
Confidence 4567999999999999999999 9999999999999874 678899999999999999999999999987 67
Q ss_pred eeEEEeeccCCCC
Q 009356 162 ASIKVRFADGERE 174 (537)
Q Consensus 162 ~~l~v~~a~~~~~ 174 (537)
+.|+|.++..+..
T Consensus 79 ~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 79 KPMRIQYAKTDSD 91 (97)
T ss_dssp EECEEEECSSCCT
T ss_pred cEEEEEEccCCCc
Confidence 9999999987543
No 177
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.6e-17 Score=140.01 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|++||+ |+|..| .++.|+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM---GNRFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---TTSCBE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE---CCcEEE
Confidence 3456899999999999999999999999999886667766799999999999999999999998 999887 678999
Q ss_pred EeeccC
Q 009356 166 VRFADG 171 (537)
Q Consensus 166 v~~a~~ 171 (537)
|.++..
T Consensus 98 V~~a~~ 103 (124)
T 1wel_A 98 VHPITK 103 (124)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998854
No 178
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=132.34 Aligned_cols=86 Identities=26% Similarity=0.396 Sum_probs=79.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcC-CCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCce-EecCCCceE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSP-YGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTF-TMRGSDQPL 254 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~-~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~-~~~g~g~~l 254 (537)
....++|||+||+.++++++|+++|+. ||.|..|.|+.+.++.++|||||+|.+.++|.+|++.|+|.. + +|+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---~g~~l 82 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL---GSKPV 82 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---SSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc---CCEeE
Confidence 345689999999999999999999999 999999999999888999999999999999999999999988 7 79999
Q ss_pred EEEEccCCCCC
Q 009356 255 VVRIADPKKPR 265 (537)
Q Consensus 255 ~V~~a~~~~~~ 265 (537)
+|.++.++..+
T Consensus 83 ~v~~a~~~~~~ 93 (104)
T 2dhg_A 83 RLSVAIPKASR 93 (104)
T ss_dssp CCCBCCCCCSC
T ss_pred EEEEccCCCcC
Confidence 99999876543
No 179
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.4e-16 Score=131.67 Aligned_cols=80 Identities=25% Similarity=0.469 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|+.||.|.+|+|+++ +|||||+|.+.++|++|++.|+|..+ .++.|+|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 93 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI---EGHVVKC 93 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE---CCcEEEE
Confidence 45689999999999999999999999999999999987 58999999999999999999999987 6789999
Q ss_pred eeccCCCCC
Q 009356 167 RFADGEREH 175 (537)
Q Consensus 167 ~~a~~~~~~ 175 (537)
.+++.+...
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4g_A 94 YWGKESPDM 102 (109)
T ss_dssp ECCCCCCSS
T ss_pred EecCCCCCC
Confidence 999876554
No 180
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=129.51 Aligned_cols=84 Identities=26% Similarity=0.405 Sum_probs=77.1
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec----CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE----LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~----~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~ 253 (537)
.+.++|||+|||.++++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.|||..+ +|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---DGHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee---CCeE
Confidence 356899999999999999999999999999999999884 347899999999999999999999999998 8999
Q ss_pred EEEEEccCCCC
Q 009356 254 LVVRIADPKKP 264 (537)
Q Consensus 254 l~V~~a~~~~~ 264 (537)
|+|.+++.+..
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 181
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=2.6e-16 Score=133.87 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
..++|||+|||+++++++|+++|+.|| .|..++|..+ +++|||||+|.+.++|++||+.|||..+ .++.|+|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l---~Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF---RGSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE---TTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 358999999999999999999999999 8999998643 4789999999999999999999999988 7899999
Q ss_pred eeccCC
Q 009356 167 RFADGE 172 (537)
Q Consensus 167 ~~a~~~ 172 (537)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998654
No 182
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=128.14 Aligned_cols=81 Identities=28% Similarity=0.465 Sum_probs=74.9
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
..++|||+||+.++++++|+++|+.||.|..|.++.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEE
Confidence 4578999999999999999999999999999999998 5888999999999999999999999999998 89999999
Q ss_pred EccCC
Q 009356 258 IADPK 262 (537)
Q Consensus 258 ~a~~~ 262 (537)
|++++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99865
No 183
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=130.54 Aligned_cols=85 Identities=29% Similarity=0.456 Sum_probs=78.9
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
...++|||+|||.++++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 82 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---QGRMLHV 82 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---SSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 456799999999999999999999999999999999995 889999999999999999999999999987 7999999
Q ss_pred EEccCCCCC
Q 009356 257 RIADPKKPR 265 (537)
Q Consensus 257 ~~a~~~~~~ 265 (537)
.++.++..+
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999987543
No 184
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=131.43 Aligned_cols=86 Identities=24% Similarity=0.308 Sum_probs=79.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.|+|..+ +|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---YGKPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---SSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence 4567899999999999999999999999999999999984 889999999999999999999999999987 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.++.++..+
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999887543
No 185
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.5e-16 Score=130.29 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeec--CCceeE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP--GEQASI 164 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~--g~~~~l 164 (537)
...++|||+|||+++++++|+++|+.||.|+.|+|+++ |||||+|.+.++|++||+.|||..|.. +..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999887 799999999999999999999998821 112899
Q ss_pred EEeeccCCCC
Q 009356 165 KVRFADGERE 174 (537)
Q Consensus 165 ~v~~a~~~~~ 174 (537)
+|.++..+..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987544
No 186
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.5e-16 Score=129.30 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=78.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|||.++++++|+++|++||.|..|.|+.+..+ ++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 87 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV---EGRKIEV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEE
Confidence 456789999999999999999999999999999999998654 899999999999999999999999998 8999999
Q ss_pred EEccCCCCCC
Q 009356 257 RIADPKKPRT 266 (537)
Q Consensus 257 ~~a~~~~~~~ 266 (537)
.++.++..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9998875443
No 187
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.1e-16 Score=128.51 Aligned_cols=81 Identities=30% Similarity=0.445 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~---~g~~l 81 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL---RGKQL 81 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB---TTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe---CCceE
Confidence 3456789999999999999999999999999999999865 58999999999999999999999987 67899
Q ss_pred EEeeccCCCC
Q 009356 165 KVRFADGERE 174 (537)
Q Consensus 165 ~v~~a~~~~~ 174 (537)
+|.++..+..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpj_A 82 RVRFACHSAS 91 (99)
T ss_dssp EEEESSCCSC
T ss_pred EEEEcCCCCC
Confidence 9999876543
No 188
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=131.91 Aligned_cols=86 Identities=31% Similarity=0.460 Sum_probs=79.1
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 86 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---DGRELR 86 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---TTBCCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---CCcEEE
Confidence 445789999999999999999999999999999999998 5688999999999999999999999999998 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.+++.+..+
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876543
No 189
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.6e-16 Score=131.63 Aligned_cols=75 Identities=25% Similarity=0.512 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||.++++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~ 96 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF---QGRNLRTG 96 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE---TTEECCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEE
Confidence 458999999999999999999999999999999974 468999999999999999999999988 67899999
Q ss_pred eccC
Q 009356 168 FADG 171 (537)
Q Consensus 168 ~a~~ 171 (537)
+++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9865
No 190
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9e-16 Score=131.79 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=76.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|++||.|+.|.|+++ .++.++|||||+|.+.++|.+||+.|++ .+ +|+.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~---~g~~l~ 89 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II---DGRKAN 89 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC---CCEEEE
Confidence 446789999999999999999999999999999999998 5789999999999999999999999998 66 789999
Q ss_pred EEEccCCC
Q 009356 256 VRIADPKK 263 (537)
Q Consensus 256 V~~a~~~~ 263 (537)
|.++..+.
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99998654
No 191
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=3.1e-16 Score=129.96 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=76.6
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~ 258 (537)
.++|||+||+.++++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---GSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEEE
Confidence 578999999999999999999999999999999998 5788999999999999999999999999998 899999999
Q ss_pred ccCCC
Q 009356 259 ADPKK 263 (537)
Q Consensus 259 a~~~~ 263 (537)
+.++.
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 98764
No 192
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.2e-16 Score=130.68 Aligned_cols=86 Identities=26% Similarity=0.402 Sum_probs=79.2
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec--CCCcceEEEEEEcCHHHHHHHHHHc-CCceEecCCCce
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE--LKQSRGCAFVQFSHREMALAAISGL-NGTFTMRGSDQP 253 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~--~g~~rg~afV~F~~~~~A~~Ai~~l-ng~~~~~g~g~~ 253 (537)
....++|||+|||..+++++|+++|+.||.|..|.|+++. ++.++|||||+|.+.++|.+|++.| |+..+ +|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---~g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---YGRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---SSCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---CCCE
Confidence 4567899999999999999999999999999999999884 7889999999999999999999999 89887 7999
Q ss_pred EEEEEccCCCCC
Q 009356 254 LVVRIADPKKPR 265 (537)
Q Consensus 254 l~V~~a~~~~~~ 265 (537)
|+|.|+.++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999987544
No 193
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=5.1e-16 Score=140.65 Aligned_cols=87 Identities=31% Similarity=0.351 Sum_probs=80.2
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|++||.|+.|.|+.+ .++.++|||||+|.+.++|.+||+.||+..+ +|+.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL---DDRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 456789999999999999999999999999999999999 4688999999999999999999999999998 899999
Q ss_pred EEEccCCCCCC
Q 009356 256 VRIADPKKPRT 266 (537)
Q Consensus 256 V~~a~~~~~~~ 266 (537)
|.|+.++..+.
T Consensus 113 V~~a~~~~~~~ 123 (156)
T 1h2v_Z 113 TDWDAGFKEGR 123 (156)
T ss_dssp EEEESCCCTTC
T ss_pred EEECCCCCCcC
Confidence 99998865543
No 194
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=131.18 Aligned_cols=87 Identities=23% Similarity=0.435 Sum_probs=79.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcC------CceEecC
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLN------GTFTMRG 249 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~ln------g~~~~~g 249 (537)
....++|||+|||.++++++|+++|+.||.|..|.|+++ .++.++|||||+|.+.++|.+|++.|| +..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~--- 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL--- 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE---
Confidence 345789999999999999999999999999999999998 568899999999999999999999999 8887
Q ss_pred CCceEEEEEccCCCCCC
Q 009356 250 SDQPLVVRIADPKKPRT 266 (537)
Q Consensus 250 ~g~~l~V~~a~~~~~~~ 266 (537)
+|+.|+|.|+.++..+.
T Consensus 89 ~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSCEEEEECCCCCCCCC
T ss_pred cCEEEEEEECCCCccCC
Confidence 89999999999875443
No 195
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-17 Score=143.79 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceee
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIE--------VVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIF 157 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~ 157 (537)
..+.++|||+|||.++++++|+++|+.||.|.. |+|++++.+|+++|||||+|.+.++|++||+.|+|..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 456789999999999999999999999999999 99999988999999999999999999999999999887
Q ss_pred cCCceeEEEeeccCCCCC
Q 009356 158 PGEQASIKVRFADGEREH 175 (537)
Q Consensus 158 ~g~~~~l~v~~a~~~~~~ 175 (537)
.++.|+|.++..+...
T Consensus 83 --~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 --SGNPIKVSFATRRADF 98 (116)
Confidence 6789999998766543
No 196
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-16 Score=130.85 Aligned_cols=83 Identities=16% Similarity=0.329 Sum_probs=73.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 84 ~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
......++|||+|||.++++++|+++|+.||.|..+ ..+|+++|||||+|.+.++|++|++.|+|..+ .++.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 82 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRS 82 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---TTEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeE
Confidence 344567999999999999999999999999987665 34789999999999999999999999999887 6789
Q ss_pred EEEeeccCCCC
Q 009356 164 IKVRFADGERE 174 (537)
Q Consensus 164 l~v~~a~~~~~ 174 (537)
|+|.++..+..
T Consensus 83 l~v~~a~~~~~ 93 (96)
T 1fjc_A 83 VSLYYTGEKGG 93 (96)
T ss_dssp EEEEECSSSCC
T ss_pred EEEEEcCCCCC
Confidence 99999976544
No 197
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=5.1e-16 Score=131.71 Aligned_cols=80 Identities=24% Similarity=0.458 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 84 NDSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 84 ~~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
......++|||+|||.++++++|+++|++||.|.+|+|+ +|||||+|.+.++|++|++.|+|..+ .++.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~---~g~~ 94 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF---ANQP 94 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE---CCeE
Confidence 345667999999999999999999999999999999997 58999999999999999999999988 6799
Q ss_pred EEEeeccCCCC
Q 009356 164 IKVRFADGERE 174 (537)
Q Consensus 164 l~v~~a~~~~~ 174 (537)
|+|.+++....
T Consensus 95 l~V~~a~~~~~ 105 (108)
T 2jvo_A 95 LEVVYSKLPAK 105 (108)
T ss_dssp CEEESCSCCC-
T ss_pred EEEEEecCCCC
Confidence 99999987654
No 198
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=128.78 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|. ++++. ++++|||||+|.+.++|++|++.|||..+ .++.|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 86 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRL---GTDTL 86 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 344578999999999999999999999999996 66654 46789999999999999999999999987 67889
Q ss_pred EEeeccCCC
Q 009356 165 KVRFADGER 173 (537)
Q Consensus 165 ~v~~a~~~~ 173 (537)
+|.++..++
T Consensus 87 ~V~~a~~~~ 95 (97)
T 2e5j_A 87 RVALARQQR 95 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999987654
No 199
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=131.81 Aligned_cols=86 Identities=34% Similarity=0.562 Sum_probs=79.2
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---DGRQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---TSCCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 445689999999999999999999999999999999998 5788999999999999999999999999987 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.|++++..+
T Consensus 86 v~~a~~~~~~ 95 (102)
T 1x5s_A 86 VDQAGKSSDN 95 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEECCCCCCC
Confidence 9999886543
No 200
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.1e-16 Score=131.01 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=70.7
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCC--CeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 181 DKLYVGCLSKQTSKKEIEEVFSPYG--HIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G--~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
.+|||+||+.++++++|+++|++|| .|.++.|+.+ .+|+++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---SSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee---CCEEEEEE
Confidence 4799999999999999999999999 9999999999 5899999999999999999999999999988 89999999
Q ss_pred EccCCC
Q 009356 258 IADPKK 263 (537)
Q Consensus 258 ~a~~~~ 263 (537)
++.++.
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 998764
No 201
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.1e-16 Score=128.79 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=78.0
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|||.++++++|+++|++||.|..|.|+++..+ .+|||||+|.+.++|.+|++.|+|..+ +|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 87 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKI---LGKEVKV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCc---CCCeEEE
Confidence 445789999999999999999999999999999999998544 689999999999999999999999998 8999999
Q ss_pred EEccCCCCCC
Q 009356 257 RIADPKKPRT 266 (537)
Q Consensus 257 ~~a~~~~~~~ 266 (537)
.|+..+..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqi_A 88 NWATTPSSQK 97 (103)
T ss_dssp EECCCTTCCC
T ss_pred EECCCCcccc
Confidence 9999865443
No 202
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=1.4e-15 Score=129.36 Aligned_cols=78 Identities=18% Similarity=0.445 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 87 GIPAKLYVAPVPRT-ATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 87 ~~~~~LfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
...++|||+|||.+ +++++|+++|++||.|.+|+| ++|||||+|.+.++|++||+.|+|..+ .++.|+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 93 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL---AGQTLD 93 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE---TTEECC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEEE
Confidence 34689999999999 999999999999999999998 468999999999999999999999988 678999
Q ss_pred EeeccCCCCC
Q 009356 166 VRFADGEREH 175 (537)
Q Consensus 166 v~~a~~~~~~ 175 (537)
|.++...+..
T Consensus 94 V~~a~~~~~~ 103 (110)
T 1wf1_A 94 INMAGEPKPD 103 (110)
T ss_dssp EEESCCCCSC
T ss_pred EEECCCCCCC
Confidence 9999755443
No 203
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=3.9e-16 Score=126.06 Aligned_cols=80 Identities=36% Similarity=0.535 Sum_probs=75.6
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
...++|||+|||.++++++|+++|++||.|..+.++++ .++..+|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 45689999999999999999999999999999999998 6888999999999999999999999999998 8999999
Q ss_pred EEcc
Q 009356 257 RIAD 260 (537)
Q Consensus 257 ~~a~ 260 (537)
.|++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 204
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1e-15 Score=128.48 Aligned_cols=84 Identities=29% Similarity=0.531 Sum_probs=77.0
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|+.|| |..|.|+++ .++.++|||||+|.+.++|.+|+ .|||..+ +|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---GDRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---TTEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---CCeEEE
Confidence 44578999999999999999999999996 999999999 46889999999999999999999 8999998 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.++.++..+
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999886543
No 205
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=124.37 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHh-cCceeecCCceeE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL-NGHYIFPGEQASI 164 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l-~g~~~~~g~~~~l 164 (537)
....++|||+|||.++++++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.| +|..+ .++.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~---~g~~l 79 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV---NGRRL 79 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE---TTEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE---CCCEE
Confidence 456789999999999999999999999999999999875 689999999999999999989 88877 56899
Q ss_pred EEeecc
Q 009356 165 KVRFAD 170 (537)
Q Consensus 165 ~v~~a~ 170 (537)
+|.|++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999874
No 206
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=1.1e-15 Score=126.98 Aligned_cols=77 Identities=14% Similarity=0.358 Sum_probs=69.6
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 85 DSGIPAKLYVAPVPR-TATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
.....++|||+|||. ++++++|+++|+.||.|.+|+|. +|||||+|.+.++|++|++.|+|..+ .++.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~ 86 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN---FGKK 86 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE---TTEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE---CCEE
Confidence 455679999999998 99999999999999999999983 68999999999999999999999987 6789
Q ss_pred EEEeeccCC
Q 009356 164 IKVRFADGE 172 (537)
Q Consensus 164 l~v~~a~~~ 172 (537)
|+|.+++.+
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998754
No 207
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=6.1e-16 Score=135.56 Aligned_cols=85 Identities=36% Similarity=0.445 Sum_probs=79.2
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
..+.++|||+|||.++++++|+++|++||.|..|.|+++ .++..+|||||+|.+.++|.+||+.|||..+ +|+.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 456789999999999999999999999999999999998 5788999999999999999999999999987 899999
Q ss_pred EEEccCCCC
Q 009356 256 VRIADPKKP 264 (537)
Q Consensus 256 V~~a~~~~~ 264 (537)
|.|+.+++.
T Consensus 120 V~~a~~~~p 128 (129)
T 2kxn_B 120 VDFSITKRP 128 (129)
T ss_dssp ESCCSSSSC
T ss_pred EEEecCCCC
Confidence 999988754
No 208
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.8e-16 Score=126.53 Aligned_cols=81 Identities=22% Similarity=0.424 Sum_probs=75.8
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---FGRVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---CCcEEE
Confidence 456789999999999999999999999999999999998 4688999999999999999999999999998 899999
Q ss_pred EEEcc
Q 009356 256 VRIAD 260 (537)
Q Consensus 256 V~~a~ 260 (537)
|.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 209
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7e-16 Score=130.98 Aligned_cols=81 Identities=12% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCc--eeecCCce
Q 009356 86 SGIPAKLYVAPVPRT-ATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH--YIFPGEQA 162 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~--~~~~g~~~ 162 (537)
..++++|||+|||++ +++++|+++|++||.|.+|+|++. ||||||+|.+.++|++|++.|++. .+ .++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l---~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWF---QGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCS---SSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceE---CCE
Confidence 446789999999998 999999999999999999999754 689999999999999999998754 34 568
Q ss_pred eEEEeeccCCCCC
Q 009356 163 SIKVRFADGEREH 175 (537)
Q Consensus 163 ~l~v~~a~~~~~~ 175 (537)
.|+|.++..++..
T Consensus 93 ~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 93 CVKVDLSEKYKKL 105 (112)
T ss_dssp CCEEEEECSCSSS
T ss_pred EEEEEECcccccc
Confidence 9999999766543
No 210
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.9e-16 Score=127.00 Aligned_cols=82 Identities=35% Similarity=0.400 Sum_probs=76.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
..+.++|||+|||.++++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 445689999999999999999999999999999999998 5688999999999999999999999999998 899999
Q ss_pred EEEccC
Q 009356 256 VRIADP 261 (537)
Q Consensus 256 V~~a~~ 261 (537)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 211
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2e-15 Score=123.98 Aligned_cols=80 Identities=31% Similarity=0.461 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|||.++++++|+++|+.||.|.+|+|+++ ||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 74 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEF---QGKRM 74 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCee---CCcEE
Confidence 3456799999999999999999999999999999999854 999999999999999999999988 67999
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.++..+...
T Consensus 75 ~V~~a~~~~~~ 85 (92)
T 2dgt_A 75 HVQLSTSRLRT 85 (92)
T ss_dssp EEEESSCCCSC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 212
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=131.15 Aligned_cols=84 Identities=33% Similarity=0.564 Sum_probs=78.3
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+..+++++|+++|++||.|..|.|+++ .+|.++|||||+|.+.++|.+|++.|+|..+ +|+.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i---~g~~l~ 99 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL---AGRPMK 99 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 456789999999999999999999999999999999998 5788999999999999999999999999987 899999
Q ss_pred EEEccCCC
Q 009356 256 VRIADPKK 263 (537)
Q Consensus 256 V~~a~~~~ 263 (537)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 213
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.9e-16 Score=129.45 Aligned_cols=85 Identities=21% Similarity=0.427 Sum_probs=77.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-C-CCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-L-KQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~-g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l 254 (537)
....++|||+|||.++++++|+++|+.|| |..|.|+.+. + +.++|||||+|.+.++|.+|| .||+..+ +|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l 86 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNKRI 86 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---TTEEC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---CCcEE
Confidence 34568999999999999999999999999 9999999984 4 889999999999999999999 9999998 89999
Q ss_pred EEEEccCCCCCC
Q 009356 255 VVRIADPKKPRT 266 (537)
Q Consensus 255 ~V~~a~~~~~~~ 266 (537)
+|.++.++..+.
T Consensus 87 ~V~~a~~~~~~~ 98 (104)
T 1wi8_A 87 RVDVADQAQDKD 98 (104)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999999876543
No 214
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=1.8e-16 Score=132.82 Aligned_cols=81 Identities=25% Similarity=0.378 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++|++ ++..+ .++.|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~---~g~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF---HGKKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE---CCEEEEE
Confidence 346899999999999999999999999999999999998 99999999999999999999997 77776 5688888
Q ss_pred eeccCCC
Q 009356 167 RFADGER 173 (537)
Q Consensus 167 ~~a~~~~ 173 (537)
.++..+.
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 8876543
No 215
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5e-16 Score=131.06 Aligned_cols=84 Identities=26% Similarity=0.422 Sum_probs=77.7
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
...++|||+||+.++++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---SSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---CCcEEEE
Confidence 34578999999999999999999999999999999998 5688999999999999999999999999987 7999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.|+.++..
T Consensus 98 ~~a~~~~~ 105 (106)
T 1p27_B 98 DWCFVRGP 105 (106)
T ss_dssp EESEESSC
T ss_pred EeecCCCC
Confidence 99987643
No 216
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=123.89 Aligned_cols=79 Identities=34% Similarity=0.535 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|.+|+|+++ ||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 74 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEV---KGKRIN 74 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 445789999999999999999999999999999999854 999999999999999999999988 679999
Q ss_pred EeeccCCCCC
Q 009356 166 VRFADGEREH 175 (537)
Q Consensus 166 v~~a~~~~~~ 175 (537)
|.++.....+
T Consensus 75 v~~a~~~~~~ 84 (90)
T 2dnp_A 75 VELSTKGQKK 84 (90)
T ss_dssp EEESCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876544
No 217
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=125.72 Aligned_cols=83 Identities=28% Similarity=0.458 Sum_probs=76.0
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCC-cceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQ-SRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~-~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
..++|||+|||.++++++|+++|++||.|..+.|+.+. ++. .+|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---DGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---CCeEEEE
Confidence 45789999999999999999999999999999999984 334 899999999999999999999999998 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.++.+...
T Consensus 80 ~~a~~~~~ 87 (88)
T 4a8x_A 80 TAVLAPWP 87 (88)
T ss_dssp EEECCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 218
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.1e-16 Score=141.67 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=74.3
Q ss_pred ceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEE
Q 009356 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIF 211 (537)
Q Consensus 132 G~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~ 211 (537)
|+||.+|.-.+.+..++..+... ..+. ..--..............++|||+|||+++++++|+++|+.|| |+.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~gg~--~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM--TGGQ--QMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CcccccccCccccchhcccchhc--cCCC--CCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 68889998888877777665543 1111 1111111111222234568999999999999999999999999 77999
Q ss_pred EEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCCC
Q 009356 212 IVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 212 i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~~~~ 263 (537)
|++|.+++++|||||+|.+.++|++|| .+|+..+ +++.|+|.++..+.
T Consensus 77 i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l---~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 77 IEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM---QHRYIELFLNSTTG 124 (139)
T ss_dssp CCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSS---SSCCCCCEECCCSC
T ss_pred EEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEE---CCEEEEEEECCCCC
Confidence 999977999999999999999999999 7899887 89999999988754
No 219
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.3e-15 Score=137.34 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
-.+|||+||++++|+++|+++|++||.|++|+|..+ +++|||||+|.+.++|++|++.|+|..|.. .++.|+|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEEEE
Confidence 478999999999999999999999999999998654 257999999999999999999999998753 358899999
Q ss_pred ccCCC
Q 009356 169 ADGER 173 (537)
Q Consensus 169 a~~~~ 173 (537)
++.+.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98754
No 220
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.1e-16 Score=131.38 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=79.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCee--------EEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEe
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIE--------DIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~--------~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~ 247 (537)
....++|||+||+.++++++|+++|++||.|. .|.|+.+ .++.++|||||+|.+.++|.+|++.|||..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF- 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE-
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc-
Confidence 44678999999999999999999999999999 6999998 6889999999999999999999999999998
Q ss_pred cCCCceEEEEEccCCCCC
Q 009356 248 RGSDQPLVVRIADPKKPR 265 (537)
Q Consensus 248 ~g~g~~l~V~~a~~~~~~ 265 (537)
+|+.|+|.+++.+..+
T Consensus 91 --~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPPM 106 (113)
T ss_dssp --TTEECEEECSSCCCCS
T ss_pred --CCCEEEEEECCCCCCC
Confidence 8999999999987543
No 221
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=128.67 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=72.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
..++++|||+|||+++++++|+++|++||.|.+|.+++ .||||||+|.+.++|.+|++.|++..+.. +|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYI-AGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEE-TTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCcee-CCcEEEE
Confidence 45678999999999999999999999999999999986 68999999999999999999999875311 6899999
Q ss_pred EEccCCC
Q 009356 257 RIADPKK 263 (537)
Q Consensus 257 ~~a~~~~ 263 (537)
.|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998753
No 222
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=127.44 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=75.9
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeE--------EEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEe
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED--------IFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~--------v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~ 247 (537)
....++|||+||+.++++++|+++|++||.|.. +.|+.+ .+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~- 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe-
Confidence 456789999999999999999999999999999 999998 6789999999999999999999999999987
Q ss_pred cCCCceEEEEEcc
Q 009356 248 RGSDQPLVVRIAD 260 (537)
Q Consensus 248 ~g~g~~l~V~~a~ 260 (537)
+|+.|+|.+|+
T Consensus 89 --~g~~l~V~~A~ 99 (99)
T 2la6_A 89 --SGNPIKVSFAT 99 (99)
T ss_dssp --SSSBCEEEECC
T ss_pred --CCcEEEEEecC
Confidence 89999999974
No 223
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=127.81 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=77.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCee-EEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce-
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIE-DIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP- 253 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~-~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~- 253 (537)
....++|||+|||.++++++|+++|++||.|. .|.|+++ .++.++|||||+|.+.++|.+|++.|||..+ +|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~ 82 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL---PGATP 82 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---SSCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---CCCCc
Confidence 34568999999999999999999999999999 9999999 5889999999999999999999999999998 7888
Q ss_pred ---EEEEEccCCC
Q 009356 254 ---LVVRIADPKK 263 (537)
Q Consensus 254 ---l~V~~a~~~~ 263 (537)
|+|.|+++..
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999998654
No 224
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.6e-15 Score=123.57 Aligned_cols=80 Identities=30% Similarity=0.394 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEH--GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
.....++|||+|||.++++++|+++|+.| |.|..|++. +|||||+|.+.++|++||+.|+|..+ .++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 79 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL---DGS 79 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE---TTE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe---CCc
Confidence 34467999999999999999999999999 999999875 46999999999999999999999988 679
Q ss_pred eEEEeeccCCCCC
Q 009356 163 SIKVRFADGEREH 175 (537)
Q Consensus 163 ~l~v~~a~~~~~~ 175 (537)
.|+|.+++.+...
T Consensus 80 ~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 80 PIEVTLAKPVDKD 92 (99)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 225
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=9.1e-16 Score=125.92 Aligned_cols=83 Identities=25% Similarity=0.320 Sum_probs=77.0
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+|||.++++++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+|++.|+|..+ +|+.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKL---SGREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCB---TTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEE
Confidence 45689999999999999999999999999999999984 788999999999999999999999999998 89999999
Q ss_pred EccCCCC
Q 009356 258 IADPKKP 264 (537)
Q Consensus 258 ~a~~~~~ 264 (537)
+++++..
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9987653
No 226
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=6.7e-16 Score=134.19 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--EEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVI--EVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
....++|||+|||+++|+++|+++|+.| .|+ +|+|++|+. |+++|||||+|.+.++|++||+ +++..| .++.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l---~gR~ 112 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERI---GHRY 112 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCB---TTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEE---CCEE
Confidence 3456899999999999999999999999 677 999999986 9999999999999999999996 567665 5678
Q ss_pred EEEeeccC
Q 009356 164 IKVRFADG 171 (537)
Q Consensus 164 l~v~~a~~ 171 (537)
|+|..+..
T Consensus 113 I~V~~a~~ 120 (126)
T 2hgm_A 113 IEVFKSSQ 120 (126)
T ss_dssp CCCEEECH
T ss_pred EEEEECCH
Confidence 88877653
No 227
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4e-16 Score=130.69 Aligned_cols=82 Identities=16% Similarity=0.367 Sum_probs=72.8
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCC--ceEecCCCceE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG--TFTMRGSDQPL 254 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng--~~~~~g~g~~l 254 (537)
....++|||+|||+++++++|+++|++||.|.+|.|++ .||||||+|.+.++|.+|++.|++ ..+ +|++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-----~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l---~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----GKNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTSCCEE---TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhccCCceE---CCEEE
Confidence 34578999999999999999999999999999999997 389999999999999999998874 566 78999
Q ss_pred EEEEccCCCCCC
Q 009356 255 VVRIADPKKPRT 266 (537)
Q Consensus 255 ~V~~a~~~~~~~ 266 (537)
+|.|++.+....
T Consensus 85 ~V~~A~~~~~~~ 96 (105)
T 1sjq_A 85 YIQFSNHKELKT 96 (105)
T ss_dssp CBCCCSSSSCCC
T ss_pred EEEEcCCCCCCc
Confidence 999998765443
No 228
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=2e-16 Score=140.10 Aligned_cols=82 Identities=22% Similarity=0.248 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||+++|+++|+++|+.|| |++|+|++|+. |+++|||||+|.+.++|++|| .+++..| .++.|+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l---~gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM---QHRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS---SSCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE---CCEEEE
Confidence 34568999999999999999999999999 77999999985 999999999999999999999 8899877 567888
Q ss_pred EeeccCCC
Q 009356 166 VRFADGER 173 (537)
Q Consensus 166 v~~a~~~~ 173 (537)
|..+....
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 88876543
No 229
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=6.4e-16 Score=127.62 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=76.3
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~ 90 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL---YGRPINVS 90 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---CCCEEEEE
Confidence 456799999999999999999999999999999999997789999999999999999999999999998 89999999
Q ss_pred EccC
Q 009356 258 IADP 261 (537)
Q Consensus 258 ~a~~ 261 (537)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 230
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=126.27 Aligned_cols=82 Identities=20% Similarity=0.415 Sum_probs=72.9
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcC--CceEecCCCceE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLN--GTFTMRGSDQPL 254 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~ln--g~~~~~g~g~~l 254 (537)
..+.++|||+|||+++++++|+++|++||.|..|.|++ .||||||+|.+.++|.+|++.|+ +..+ +|++|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr~l 83 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-----GKNQAFLELATEEAAITMVNYYSAVTPHL---RNQPI 83 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCEE---TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceE---CCcEE
Confidence 45678999999999999999999999999999999887 38999999999999999999875 5566 79999
Q ss_pred EEEEccCCCCCC
Q 009356 255 VVRIADPKKPRT 266 (537)
Q Consensus 255 ~V~~a~~~~~~~ 266 (537)
+|.|++.+....
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999998765443
No 231
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.6e-16 Score=131.68 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||.++++++|+++|++||.|.+|+|++ ++|||||+|.+.++|++||+.|||..+ .++.|+|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~ 79 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF---HHVPLYLE 79 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS---SSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE---CCeEEEEE
Confidence 458999999999999999999999999999999875 468999999999999999999999987 67899999
Q ss_pred eccCC
Q 009356 168 FADGE 172 (537)
Q Consensus 168 ~a~~~ 172 (537)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98653
No 232
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=4.3e-16 Score=124.85 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=69.4
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
..-|||+||++.+|+++|+++|.+||+|.++++.. +||||||+|.+.++|.+|++.||+..+ .|++|+|.+|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l---~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVL---ANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEE---TTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEE---CCcEEEEEEC
Confidence 46799999999999999999999999999999977 799999999999999999999999998 8999999998
Q ss_pred c
Q 009356 260 D 260 (537)
Q Consensus 260 ~ 260 (537)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 233
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=125.92 Aligned_cols=80 Identities=26% Similarity=0.389 Sum_probs=69.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcC-ceeecCCcee
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGN-VIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG-HYIFPGEQAS 163 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g-~~~~~g~~~~ 163 (537)
....++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..+ .++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~ 74 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL---HGKI 74 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE---TTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE---CCEE
Confidence 345689999999999999999999999999 6665552 468999999999999999999999 776 6789
Q ss_pred EEEeeccCCCCC
Q 009356 164 IKVRFADGEREH 175 (537)
Q Consensus 164 l~v~~a~~~~~~ 175 (537)
|+|.++..+..+
T Consensus 75 l~v~~a~~~~~~ 86 (93)
T 2cqh_A 75 MEVDYSVSKKLR 86 (93)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEccCcccc
Confidence 999999876554
No 234
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=128.08 Aligned_cols=85 Identities=25% Similarity=0.419 Sum_probs=78.0
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|++||.|..|.|+++ .++.++|||||+|.+.++|.+|++. ++..+ +|+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---~g~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---DGRNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---TTEEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---CCEEEE
Confidence 345689999999999999999999999999999999999 6788999999999999999999998 99887 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 235
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=7.8e-16 Score=130.83 Aligned_cols=84 Identities=31% Similarity=0.426 Sum_probs=78.3
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
...++|||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V 100 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTIQV 100 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCcEEEE
Confidence 45678999999999999999999999999999999998 5788999999999999999999999999998 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.|+.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987654
No 236
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.1e-15 Score=141.36 Aligned_cols=83 Identities=22% Similarity=0.364 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
....++|||+|||.++++++|+++|+.||.|++|.|+.++ +|+++|||||+|.+.++|++||+.|+|..| .++.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---~Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL---DGRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC---SSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 3457899999999999999999999999999999999998 999999999999999999999999999987 668999
Q ss_pred EeeccCC
Q 009356 166 VRFADGE 172 (537)
Q Consensus 166 v~~a~~~ 172 (537)
|.++...
T Consensus 161 V~~a~~~ 167 (177)
T 2f3j_A 161 IQLVASQ 167 (177)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9998654
No 237
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=4.5e-15 Score=124.61 Aligned_cols=78 Identities=27% Similarity=0.406 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|+.||.|.+|+|++ |||||+|.+.++|++||+.|+|..+ .++.|+|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 77 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL---EGENIEI 77 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc---CCCEEEE
Confidence 4568999999999999999999999999999999874 5999999999999999999999987 6789999
Q ss_pred eeccCCCCC
Q 009356 167 RFADGEREH 175 (537)
Q Consensus 167 ~~a~~~~~~ 175 (537)
.++..+...
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 999876544
No 238
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=1.4e-15 Score=128.53 Aligned_cols=81 Identities=27% Similarity=0.412 Sum_probs=76.9
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+||+..+++++|+++|+.||.|..|.|+.+.++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 102 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL---DGRPMNI 102 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---CCcEEEE
Confidence 4557899999999999999999999999999999999999899999999999999999999999999998 8999999
Q ss_pred EEcc
Q 009356 257 RIAD 260 (537)
Q Consensus 257 ~~a~ 260 (537)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 239
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=126.62 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=74.9
Q ss_pred CCCCCcccccCCcCCCHHHHH----HHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce
Q 009356 178 APPDKLYVGCLSKQTSKKEIE----EVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~----~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~ 253 (537)
...++|||+|||.++++++|+ ++|++||.|..|.|+.+..+ +|||||+|.+.++|.+|++.|||..+ +|+.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~---~gr~ 81 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKI---GSKK 81 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEE---TTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEE---CCeE
Confidence 346789999999999999999 99999999999999998655 89999999999999999999999998 8999
Q ss_pred EEEEEccCCC
Q 009356 254 LVVRIADPKK 263 (537)
Q Consensus 254 l~V~~a~~~~ 263 (537)
|+|.+++++.
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999998654
No 240
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=134.99 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNV----IEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
..++|||+|||+++|+++|+++|+.||.| ..|+|++|+ +|+++|||||+|.+.++|++||+. ++..| .++.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l---~gR~ 96 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL---GKRY 96 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES---SSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee---CCeE
Confidence 45899999999999999999999999975 689999995 899999999999999999999965 88766 5677
Q ss_pred EEEeecc
Q 009356 164 IKVRFAD 170 (537)
Q Consensus 164 l~v~~a~ 170 (537)
|+|..+.
T Consensus 97 i~V~~a~ 103 (123)
T 2dha_A 97 IELFRST 103 (123)
T ss_dssp ECCEEEC
T ss_pred EEEEECC
Confidence 8777664
No 241
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.9e-16 Score=131.53 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=70.8
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEcc----HHH----HHHHHH--HhcCce
Q 009356 90 AKLYVAPV----PRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTI----FEE----AGNAIR--ALNGHY 155 (537)
Q Consensus 90 ~~LfVgnL----p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~----~e~----A~~Ai~--~l~g~~ 155 (537)
.+|||+|| |+++++++|+++|+.||+|.+|+++.|+.||+++|||||+|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 889988 789998
Q ss_pred eecCCceeEEEeeccC
Q 009356 156 IFPGEQASIKVRFADG 171 (537)
Q Consensus 156 ~~~g~~~~l~v~~a~~ 171 (537)
| .++.|+|...+.
T Consensus 83 I---~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 I---MGFKFEVILNKH 95 (136)
T ss_dssp E---TTEEEEEEECCT
T ss_pred e---cCcEEEEEECcc
Confidence 8 779999988654
No 242
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=127.17 Aligned_cols=83 Identities=29% Similarity=0.382 Sum_probs=75.4
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+||+.++++++|+++|++||.|+.|.|..+ +.++|||||+|.+.++|.+|++.||+..+ +|+.|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 93 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDY---DGYRLRV 93 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 445689999999999999999999999999999999664 45799999999999999999999999998 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.|++.+..
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99987653
No 243
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6e-15 Score=122.40 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|| ++++++|+++|++||.|.+|+|. +++|||||+|.+.++|++||+.|+|..+ .++.|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l 79 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQL 79 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE---TTEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence 3446789999996 99999999999999999999984 4679999999999999999999999987 67999
Q ss_pred EEeeccCCCCC
Q 009356 165 KVRFADGEREH 175 (537)
Q Consensus 165 ~v~~a~~~~~~ 175 (537)
+|.++..+...
T Consensus 80 ~v~~a~~~~~~ 90 (97)
T 1x5p_A 80 KVNIARKQPML 90 (97)
T ss_dssp EEECCSSCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876544
No 244
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=122.58 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=76.4
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+|||.++++++|+++|+.| .|..|.|+++.+|+++|||||+|.+.++|.+|++ |||..+ +|+.|+|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---~gr~i~v~ 82 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM---GGRYIEVF 82 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---TTEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee---CCcEEEEE
Confidence 456899999999999999999999999 9999999999889999999999999999999999 999998 89999999
Q ss_pred EccCCC
Q 009356 258 IADPKK 263 (537)
Q Consensus 258 ~a~~~~ 263 (537)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 245
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=1.6e-15 Score=123.57 Aligned_cols=80 Identities=20% Similarity=0.401 Sum_probs=75.1
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~ 258 (537)
.++|||+|||.++++++|+++|+.||.|..+.++.+ .++.++|||||+|.+.++|.+|+ .|||..+ +|+.|+|.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---~g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---RGRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---TTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---CCcEEEEEE
Confidence 468999999999999999999999999999999998 58899999999999999999999 9999998 899999999
Q ss_pred ccCCC
Q 009356 259 ADPKK 263 (537)
Q Consensus 259 a~~~~ 263 (537)
++++.
T Consensus 82 a~~~~ 86 (89)
T 3ucg_A 82 KRTNR 86 (89)
T ss_dssp TTTTS
T ss_pred ccCCC
Confidence 98653
No 246
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=128.37 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=76.1
Q ss_pred CCCCCCcccccCCcCCCHHHHH---HHHcCCCCeeEEEEEeec-C---CCcceEEEEEEcCHHHHHHHHHHcCCceEecC
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIE---EVFSPYGHIEDIFIVRDE-L---KQSRGCAFVQFSHREMALAAISGLNGTFTMRG 249 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~---~~F~~~G~I~~v~i~~d~-~---g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g 249 (537)
....++|||+|||.++++++|+ ++|++||.|..|.|+++. + +.++|||||+|.+.++|.+||+.|||..+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~--- 88 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV--- 88 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE---
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE---
Confidence 3456799999999999999999 999999999999999884 2 35679999999999999999999999998
Q ss_pred CCceEEEEEccCCC
Q 009356 250 SDQPLVVRIADPKK 263 (537)
Q Consensus 250 ~g~~l~V~~a~~~~ 263 (537)
+|+.|+|.|+.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 89999999998875
No 247
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=2.9e-15 Score=125.75 Aligned_cols=81 Identities=23% Similarity=0.457 Sum_probs=73.2
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+||+.++++++|+++|++||.|..|.|+ ++||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 77 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDL---EGENIEI 77 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCcc---CCCEEEE
Confidence 3456899999999999999999999999999999986 45999999999999999999999998 8999999
Q ss_pred EEccCCCCCCC
Q 009356 257 RIADPKKPRTG 267 (537)
Q Consensus 257 ~~a~~~~~~~~ 267 (537)
.|+.++..+..
T Consensus 78 ~~a~~~~~~~~ 88 (103)
T 2dgu_A 78 VFAKPPDQKRK 88 (103)
T ss_dssp EECCCCCCCCC
T ss_pred EEcCCCcccch
Confidence 99988765443
No 248
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=128.54 Aligned_cols=80 Identities=21% Similarity=0.393 Sum_probs=70.1
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee--ecCCce
Q 009356 87 GIPAKLYV--APVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI--FPGEQA 162 (537)
Q Consensus 87 ~~~~~LfV--gnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~--~~g~~~ 162 (537)
.+.++||| |||++++++++|+++|++||.|.+|.|+.+ ||||||+|.+.++|++|++.|||..+ ..+.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45689999 779999999999999999999999988653 68999999999999999999999976 234578
Q ss_pred eEEEeeccCC
Q 009356 163 SIKVRFADGE 172 (537)
Q Consensus 163 ~l~v~~a~~~ 172 (537)
.|.|.++...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998643
No 249
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=130.22 Aligned_cols=65 Identities=23% Similarity=0.374 Sum_probs=60.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCC---CCccceEEEEEccHHHHHHHHHHhc
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRT---GQQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |++||||||+|.+.++|++||+.|+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 4568999999999999999999999999999 889988877 7999999999999999999999983
No 250
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=125.57 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=74.4
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|||.++++++|+++|++||.| .++.+.++..+|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v 85 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI---EGRAIRL 85 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---CCeEEEE
Confidence 4467899999999999999999999999987 566667888999999999999999999999999998 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.|++++..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99987643
No 251
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=129.87 Aligned_cols=82 Identities=16% Similarity=0.367 Sum_probs=73.2
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCC--ceEecCCCceE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG--TFTMRGSDQPL 254 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng--~~~~~g~g~~l 254 (537)
..+.++|||+|||+++++++|+++|++||.|.+|.|++ .||||||+|.+.++|.+|++.|++ ..+ +|++|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l---~Gr~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----GKNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-----GGTEEEEECSCHHHHHHHHHHHHHHCCCB---TTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhccCCceE---CCeEE
Confidence 45678999999999999999999999999999999997 489999999999999999999985 455 78999
Q ss_pred EEEEccCCCCCC
Q 009356 255 VVRIADPKKPRT 266 (537)
Q Consensus 255 ~V~~a~~~~~~~ 266 (537)
+|.|++.+....
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999998765443
No 252
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=126.33 Aligned_cols=79 Identities=13% Similarity=0.322 Sum_probs=68.2
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 85 DSGIPAKLYVAPVPR-TATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
+..+.++|||+|||. ++++++|+++|+.||.|.+|+|. +|||||+|.+.++|++|++.|+|..+ .++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 74 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN---FGKK 74 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC---BTTT
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee---CCcE
Confidence 345678999999998 99999999999999999999984 58999999999999999999999987 4678
Q ss_pred EEEeeccCCCC
Q 009356 164 IKVRFADGERE 174 (537)
Q Consensus 164 l~v~~a~~~~~ 174 (537)
|+|.++.....
T Consensus 75 l~V~~a~~~~~ 85 (96)
T 2kvi_A 75 LILEVSSSNAR 85 (96)
T ss_dssp BCEEEEECCCC
T ss_pred EEEEEcCcCCC
Confidence 88888865543
No 253
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.1e-15 Score=131.59 Aligned_cols=81 Identities=21% Similarity=0.367 Sum_probs=75.3
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|++||.|..|.|+++ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 113 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---GTKRLK 113 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---TTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 445689999999999999999999999999999999998 5788999999999999999999999999998 899999
Q ss_pred EEEcc
Q 009356 256 VRIAD 260 (537)
Q Consensus 256 V~~a~ 260 (537)
|.|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 254
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.1e-15 Score=123.72 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=75.8
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|++ ++..+ +|+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~---~g~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI---DGRWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE---TTEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee---CCeEEE
Confidence 456789999999999999999999999999999999999 578999999999999999999999 46666 789999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.++.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999887543
No 255
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.9e-16 Score=128.68 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=74.5
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+|||.++|+++|+++|+.||.|..|.|+++..|.++|||||+|.+.++|.+|++ ++|..+ +|+.|.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~---~gr~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY---KETDLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC---TTTTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE---CCEEEEEE
Confidence 34578999999999999999999999999999999999769999999999999999999999 899887 89999999
Q ss_pred EccC
Q 009356 258 IADP 261 (537)
Q Consensus 258 ~a~~ 261 (537)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9764
No 256
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=2.3e-16 Score=131.94 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=75.1
Q ss_pred CCCcccccCCc------CCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCC-
Q 009356 180 PDKLYVGCLSK------QTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSD- 251 (537)
Q Consensus 180 ~~~l~V~nl~~------~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g- 251 (537)
.++|||+|||. ++++++|+++|++||.|..|.|+++. +|+++|||||+|.+.++|.+|++.|||..+ +|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL---DLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS---SSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc---CCC
Confidence 46899999999 99999999999999999999999994 699999999999999999999999999998 77
Q ss_pred ceEEEEEccCC
Q 009356 252 QPLVVRIADPK 262 (537)
Q Consensus 252 ~~l~V~~a~~~ 262 (537)
+.|+|.++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999764
No 257
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.8e-16 Score=128.12 Aligned_cols=79 Identities=19% Similarity=0.313 Sum_probs=71.3
Q ss_pred CCCCCCcccccCCc-CCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCc--eEecCCCce
Q 009356 177 VAPPDKLYVGCLSK-QTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGT--FTMRGSDQP 253 (537)
Q Consensus 177 ~~~~~~l~V~nl~~-~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~--~~~~g~g~~ 253 (537)
..+.++|||+|||+ ++++++|+++|++||.|.+|.|++ .+|||||+|.+.++|.+|++.|++. .+ +|++
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr~ 83 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-----KINEAFIEMATTEDAQAAVDYYTTTPALV---FGKP 83 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-----SSSCEEEEESSHHHHHHHHHHHHHSCCEE---TTEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHHcCCCceE---CCcE
Confidence 44678999999999 999999999999999999999987 4689999999999999999999864 35 7999
Q ss_pred EEEEEccCCC
Q 009356 254 LVVRIADPKK 263 (537)
Q Consensus 254 l~V~~a~~~~ 263 (537)
|+|.|+..++
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999998654
No 258
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=126.55 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=73.4
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCC-----c
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSD-----Q 252 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g-----~ 252 (537)
...++|||+|||.++++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|||..+ +| +
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~~~~~ 83 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGETA 83 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEE---ECTTSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCc---cCCcCcce
Confidence 45689999999999999999999999999999999885 8999999999999999999999998 67 9
Q ss_pred eEEEEEccCCCCCC
Q 009356 253 PLVVRIADPKKPRT 266 (537)
Q Consensus 253 ~l~V~~a~~~~~~~ 266 (537)
.|+|.++.++....
T Consensus 84 ~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 84 YIRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEEESSCCSCCC
T ss_pred EEEEEeCCCCCCCC
Confidence 99999999865443
No 259
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=9.1e-16 Score=133.74 Aligned_cols=86 Identities=26% Similarity=0.405 Sum_probs=79.1
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+..+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCeEEE
Confidence 345679999999999999999999999999999999998 5888999999999999999999999999998 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.|+.++..+
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876544
No 260
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=127.50 Aligned_cols=83 Identities=27% Similarity=0.484 Sum_probs=77.5
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~ 258 (537)
.++|||+||+..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~ 84 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF---SGRALRVDN 84 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---SSSCBEEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCcEEEEEe
Confidence 478999999999999999999999999999999999 5788999999999999999999999999988 899999999
Q ss_pred ccCCCCC
Q 009356 259 ADPKKPR 265 (537)
Q Consensus 259 a~~~~~~ 265 (537)
+.++..+
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9876543
No 261
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=2.8e-15 Score=122.41 Aligned_cols=78 Identities=23% Similarity=0.386 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
....+|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|++ |+|..+ .++++.|+|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~-~~~g~~v~v 78 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDL-IIKGISVHI 78 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEE-EETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCc-ccCCEEEEE
Confidence 45689999999999999999999999999999999885 68999999999999983 556544 335789999
Q ss_pred eeccCCCC
Q 009356 167 RFADGERE 174 (537)
Q Consensus 167 ~~a~~~~~ 174 (537)
.++..+..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99876543
No 262
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=129.42 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=76.7
Q ss_pred CCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 176 PVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 176 ~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
.....++|||+||+.++++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|++.|+|..+ +|+.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVV---EGRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 345678999999999999999999999999999999999854 4899999999999999999999999998 899999
Q ss_pred EEEccCC
Q 009356 256 VRIADPK 262 (537)
Q Consensus 256 V~~a~~~ 262 (537)
|.+++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 263
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=5.3e-16 Score=149.58 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=75.2
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCC--CeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYG--HIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G--~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
..++|||+||++++++++|+++|++|| .|+.|+|++| .+++++|||||+|.+.++|.+||+.||+..+ +|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---TTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---CCEEeE
Confidence 456899999999999999999999999 9999999999 5899999999999999999999999999998 899999
Q ss_pred EEEccCC
Q 009356 256 VRIADPK 262 (537)
Q Consensus 256 V~~a~~~ 262 (537)
|.++++.
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998653
No 264
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.9e-16 Score=139.30 Aligned_cols=87 Identities=20% Similarity=0.335 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE--EeccC---CCCCCccceEEEEEccHHHHHHHHHHhcCceeecCC
Q 009356 86 SGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEV--VLPKD---KRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v--~i~~d---~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~ 160 (537)
..+.++|||+|||+++|+++|+++|+.||.|..| +++.| ..+|+++|||||+|.+.++|.+||+.|||..+ .
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL---F 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe---C
Confidence 4456899999999999999999999999998875 12222 24799999999999999999999999999988 6
Q ss_pred ceeEEEeeccCCCCC
Q 009356 161 QASIKVRFADGEREH 175 (537)
Q Consensus 161 ~~~l~v~~a~~~~~~ 175 (537)
++.|+|.+++....+
T Consensus 119 g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 119 GKPMVVQFARSARPK 133 (143)
T ss_dssp TEECEEEECCCSCC-
T ss_pred CcEEEEEECCCCCCc
Confidence 799999999765443
No 265
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=129.33 Aligned_cols=83 Identities=25% Similarity=0.403 Sum_probs=76.5
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
..++|||+||+.++++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+||+. ++..+ +|+.|+|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI---DGRVVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE---TTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE---CCEEEEEE
Confidence 3578999999999999999999999999999999999 5788999999999999999999997 88887 89999999
Q ss_pred EccCCCCC
Q 009356 258 IADPKKPR 265 (537)
Q Consensus 258 ~a~~~~~~ 265 (537)
++.++..+
T Consensus 102 ~a~~~~~~ 109 (116)
T 1x4b_A 102 RAVAREES 109 (116)
T ss_dssp CCSSCCCC
T ss_pred ECCCCccC
Confidence 99887543
No 266
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=125.82 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=72.1
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCce--EecCCCceE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTF--TMRGSDQPL 254 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~--~~~g~g~~l 254 (537)
..+.++|||+||++++++++|+++|++||.|..|.|++ .||||||+|.+.++|.+|++.|++.. + +|++|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i---~Gr~l 83 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYI---AGQQA 83 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBS---SSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceE---CCEEE
Confidence 45678999999999999999999999999999999887 48999999999999999999997653 4 78999
Q ss_pred EEEEccCCCCC
Q 009356 255 VVRIADPKKPR 265 (537)
Q Consensus 255 ~V~~a~~~~~~ 265 (537)
+|.|++.+..+
T Consensus 84 ~V~~a~~~~~~ 94 (104)
T 1wex_A 84 FFNYSTSKRIT 94 (104)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCcccc
Confidence 99999876543
No 267
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=128.17 Aligned_cols=86 Identities=21% Similarity=0.311 Sum_probs=76.1
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCC-eeEEEEE-ee-cCCCcceEEEEEEcCHHHHHHHHHHcC--CceEecCCCc
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGH-IEDIFIV-RD-ELKQSRGCAFVQFSHREMALAAISGLN--GTFTMRGSDQ 252 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~-I~~v~i~-~d-~~g~~rg~afV~F~~~~~A~~Ai~~ln--g~~~~~g~g~ 252 (537)
...++|||+|||.++++++|+++|++||. |..|.|+ .+ .+|.++|||||+|.+.++|.+|++.|+ +..+ +|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~---~g~ 82 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL---WGH 82 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB---TTB
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee---cCC
Confidence 35678999999999999999999999998 9999998 55 467899999999999999999999996 4666 789
Q ss_pred eEEEEEccCCCCCC
Q 009356 253 PLVVRIADPKKPRT 266 (537)
Q Consensus 253 ~l~V~~a~~~~~~~ 266 (537)
.|+|.|++++....
T Consensus 83 ~l~V~~a~~~~~~~ 96 (109)
T 2dis_A 83 QIAVDWAEPEIDVD 96 (109)
T ss_dssp CCEEEESCSSCSTT
T ss_pred eEEEEEcCCCCCcC
Confidence 99999999876543
No 268
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=9.8e-16 Score=134.64 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=77.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeE--EEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCc----eEecC
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED--IFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGT----FTMRG 249 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~--v~i~~d~-~g~~rg~afV~F~~~~~A~~Ai~~lng~----~~~~g 249 (537)
....++|||+||++++++++|+++|++||.|.. |+|++|. +|++||||||+|.+. +|.+|++.|||. .+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~--- 95 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI--- 95 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC---
Confidence 345689999999999999999999999999976 9999995 899999999999999 999999999998 76
Q ss_pred CCceEEEEEccCCCCC
Q 009356 250 SDQPLVVRIADPKKPR 265 (537)
Q Consensus 250 ~g~~l~V~~a~~~~~~ 265 (537)
+|+.|+|.++++++.+
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 7999999999876543
No 269
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=126.93 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|||+++++++|+++|+.|| +..|.|++|.+++++|||||+|.+.++|.+||+ +|+..+ ++|.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~---~gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANM---QHRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCS---SSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeE---CCcEEEE
Confidence 34567999999999999999999999999 559999999899999999999999999999995 799887 8999999
Q ss_pred EEccCCC
Q 009356 257 RIADPKK 263 (537)
Q Consensus 257 ~~a~~~~ 263 (537)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9988654
No 270
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=2.2e-15 Score=122.72 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||+++++++|+++|++| .|.+|+|. +++|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF---RGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE---TTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE---CCcEEEEE
Confidence 46899999999999999999999999 99999884 5789999999999999999999999988 67999999
Q ss_pred eccCC
Q 009356 168 FADGE 172 (537)
Q Consensus 168 ~a~~~ 172 (537)
++..+
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98654
No 271
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=3.2e-15 Score=129.97 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=78.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+||+..+++++|+++|++||.|..|.|+.+.+|.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V 108 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---DGRPMDI 108 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES---SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE---CCcEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999999999987 8999999
Q ss_pred EEccCCC
Q 009356 257 RIADPKK 263 (537)
Q Consensus 257 ~~a~~~~ 263 (537)
.++....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9998753
No 272
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=136.39 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=75.5
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCC--CeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYG--HIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G--~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
..++|||+||++++++++|+++|+.|| .|..|.|+.| .+|.++|||||+|.+.++|.+||+.|||..+ +|+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL---NGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEeE
Confidence 357899999999999999999999999 9999999999 6899999999999999999999999999998 899999
Q ss_pred EEEccCC
Q 009356 256 VRIADPK 262 (537)
Q Consensus 256 V~~a~~~ 262 (537)
|.++.++
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9999754
No 273
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=3.2e-15 Score=126.93 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=73.9
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|+.||.|..|.|+++ .+|.++|||||+|.+.++|.+|++.+ +..+ +|+.|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l---~g~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL---DSKTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE---TTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC---CCEEEE
Confidence 345689999999999999999999999999999999999 56899999999999999999999986 4665 789999
Q ss_pred EEEccCCCC
Q 009356 256 VRIADPKKP 264 (537)
Q Consensus 256 V~~a~~~~~ 264 (537)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 274
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=4e-15 Score=129.26 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=75.9
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~ 258 (537)
.++|||+||+.++++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+ .|||..+ +|+.|+|.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~V~~ 111 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---RGRTIKVLP 111 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---TTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---CCeEEEEEE
Confidence 578999999999999999999999999999999998 68899999999999999999999 7999998 899999999
Q ss_pred ccCCCC
Q 009356 259 ADPKKP 264 (537)
Q Consensus 259 a~~~~~ 264 (537)
++....
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 986543
No 275
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=1.7e-15 Score=133.72 Aligned_cols=121 Identities=10% Similarity=-0.001 Sum_probs=76.7
Q ss_pred ceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCC---ee
Q 009356 132 GYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGH---IE 208 (537)
Q Consensus 132 G~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~---I~ 208 (537)
|++|.+|...+.+-.....+-.. ..+... ..............++|||+|||+++|+++|+++|+.||. |.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~gg~~~----g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~ 75 (136)
T 2hgl_A 2 GSSHHHHHHSSGLVPRGSHMASM--TGGQQM----GRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA 75 (136)
T ss_dssp ---------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST
T ss_pred ccccccccchHHHHhhccCCCcc--cCCCCC----CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee
Confidence 56777777666655554333222 111100 0011111122345688999999999999999999999999 89
Q ss_pred EEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccCC
Q 009356 209 DIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 209 ~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~~~ 262 (537)
.|.|++|..|+++|||||+|.+.++|.+||+ ||+..+ +||.|+|.++..+
T Consensus 76 ~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l---~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 76 GVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM---GHRYIEVFKSHRT 125 (136)
T ss_dssp TEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES---SSSEEEEEECCHH
T ss_pred EEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE---CCEEEEEEECChH
Confidence 9999999779999999999999999999999 999887 8999999998654
No 276
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.9e-15 Score=121.71 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKV 166 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 166 (537)
...++|||+|||.++++++|+++|+.||.|.+| +.++.+|+ ||||+|.+.++|++||+ |+|..+ .++.|+|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~---~g~~l~V 76 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL---GGHRLRV 76 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE---TTEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE---CCEEEEE
Confidence 345899999999999999999999999999987 55655665 99999999999999998 999988 6789999
Q ss_pred eeccCCCC
Q 009356 167 RFADGERE 174 (537)
Q Consensus 167 ~~a~~~~~ 174 (537)
.++..+..
T Consensus 77 ~~a~~~~~ 84 (94)
T 2e5g_A 77 RPREQKEF 84 (94)
T ss_dssp BCSCCSCC
T ss_pred EECCcCCC
Confidence 98865543
No 277
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=8e-15 Score=127.47 Aligned_cols=79 Identities=14% Similarity=0.309 Sum_probs=70.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccce-EEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGY-CFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
--+|||+||++.+|+++|+++|++||.|.+|+|+.+ .+|| |||+|.+.++|++|++.|||..|.. ..+.|+|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEEEE
Confidence 467889999999999999999999999999998764 2578 9999999999999999999999865 35899999
Q ss_pred eccCCC
Q 009356 168 FADGER 173 (537)
Q Consensus 168 ~a~~~~ 173 (537)
+++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998654
No 278
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.3e-15 Score=122.90 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEE
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEV-VLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIK 165 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~ 165 (537)
...++|||+|||+++++++|+++|+.||.|.+| .|++++.+|+ |||+|.+.++|++||+.|||..+ .++.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 85 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQL---ENFTLK 85 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBC---SSCBCE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 346899999999999999999999999999999 5888875543 99999999999999999999988 678999
Q ss_pred EeeccCC
Q 009356 166 VRFADGE 172 (537)
Q Consensus 166 v~~a~~~ 172 (537)
|.++..+
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9998765
No 279
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.9e-15 Score=121.67 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=72.0
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+||+.++++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v~ 75 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKL---HGVNINVE 75 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBC---SSCBCEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCcc---CCcEEEEE
Confidence 456899999999999999999999999999999987 57999999999999999999999887 89999999
Q ss_pred EccCCCCC
Q 009356 258 IADPKKPR 265 (537)
Q Consensus 258 ~a~~~~~~ 265 (537)
|+.++..+
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99886543
No 280
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-15 Score=126.01 Aligned_cols=82 Identities=23% Similarity=0.250 Sum_probs=75.4
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
...++|||+|||.++++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V 89 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVKL 89 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---CCeEEEE
Confidence 34578999999999999999999999999998888777 6788999999999999999999999999998 8999999
Q ss_pred EEccCC
Q 009356 257 RIADPK 262 (537)
Q Consensus 257 ~~a~~~ 262 (537)
.++..+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998754
No 281
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.4e-15 Score=123.21 Aligned_cols=79 Identities=28% Similarity=0.418 Sum_probs=72.7
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCC--CceEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGS--DQPLV 255 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~--g~~l~ 255 (537)
.+.++|||+||+.++++++|+++|++||.|+.|.+.. .+|||||+|.+.++|.+|++.|||..+ + |+.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~---~~~g~~l~ 86 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----GDSFAYIQYESLDAAQAACAKMRGFPL---GGPDRRLR 86 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----SSCCEEEEESSHHHHHHHHHHHTTCBC---SSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----CCCEEEEEECCHHHHHHHHHHHCCCEe---CCCCcEEE
Confidence 4568999999999999999999999999999999886 378999999999999999999999987 6 89999
Q ss_pred EEEccCCCC
Q 009356 256 VRIADPKKP 264 (537)
Q Consensus 256 V~~a~~~~~ 264 (537)
|.|++++..
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999998653
No 282
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.8e-15 Score=125.34 Aligned_cols=83 Identities=23% Similarity=0.219 Sum_probs=75.8
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeE-EEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIED-IFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~-v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||+++++++|+++|+.||.|.. |.|+.+.+|+++|||||+|.+.++|.+||+. ++..+ +|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~---~gr~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERI---GHRYIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCS---SSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccchh---CCcEEE
Confidence 345689999999999999999999999999987 8888888899999999999999999999997 88887 899999
Q ss_pred EEEccCCC
Q 009356 256 VRIADPKK 263 (537)
Q Consensus 256 V~~a~~~~ 263 (537)
|.++..+.
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987654
No 283
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=5.6e-15 Score=119.85 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=72.1
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|++ +++..+ +|+.|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL---DGRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE---TTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE---CCEEEE
Confidence 345689999999999999999999999999999999998 578999999999999999999996 577776 899999
Q ss_pred EEEc
Q 009356 256 VRIA 259 (537)
Q Consensus 256 V~~a 259 (537)
|.+|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9885
No 284
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.5e-15 Score=125.45 Aligned_cols=80 Identities=24% Similarity=0.244 Sum_probs=73.6
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
..++|||+|||.++++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~l~v~ 90 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVKLS 90 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---CCcEEEEE
Confidence 4578999999999999999999999999998888887 6788999999999999999999999999998 89999999
Q ss_pred EccC
Q 009356 258 IADP 261 (537)
Q Consensus 258 ~a~~ 261 (537)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 9763
No 285
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=127.88 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=73.8
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec--CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE--LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~--~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l 254 (537)
....++|||+||+.++++++|+++|+.|| |..|.|+++. +|+++|||||+|.+.++|.+|+ .|+|..+ +|+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~---~g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---TTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---CCeEE
Confidence 34568999999999999999999999999 9999999985 7899999999999999999999 8999998 89999
Q ss_pred EEEEccCCC
Q 009356 255 VVRIADPKK 263 (537)
Q Consensus 255 ~V~~a~~~~ 263 (537)
+|.+++++.
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998753
No 286
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=121.87 Aligned_cols=83 Identities=29% Similarity=0.379 Sum_probs=74.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|+.|+ .|.++.+ .++.++|||||+|.+.++|.+||+.|||..+ +|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---DGNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence 45678999999999999999999999873 6777777 5788999999999999999999999999998 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.|++++..+
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999987543
No 287
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.5e-15 Score=123.06 Aligned_cols=79 Identities=25% Similarity=0.481 Sum_probs=73.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|||..+++++|+++|++||.|..|.+.+ .+|||||+|.+.++|.+|++.|+|..+ +|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v 83 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPL---RGKQLRV 83 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCB---TTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEe---CCceEEE
Confidence 45678999999999999999999999999999999986 589999999999999999999999998 8999999
Q ss_pred EEccCCC
Q 009356 257 RIADPKK 263 (537)
Q Consensus 257 ~~a~~~~ 263 (537)
.|++++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9998764
No 288
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.2e-15 Score=126.06 Aligned_cols=86 Identities=28% Similarity=0.558 Sum_probs=77.2
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEec-----CCC
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMR-----GSD 251 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~-----g~g 251 (537)
....++|||+|||.++++++|+++|+.||.|..|.|+.+.++.++|||||+|.+.++|.+|++.|||..+.. ..+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345689999999999999999999999999999999999888999999999999999999999999988611 136
Q ss_pred ceEEEEEccCC
Q 009356 252 QPLVVRIADPK 262 (537)
Q Consensus 252 ~~l~V~~a~~~ 262 (537)
++|.|.|++++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999864
No 289
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.57 E-value=1.5e-15 Score=119.67 Aligned_cols=74 Identities=22% Similarity=0.460 Sum_probs=69.8
Q ss_pred CcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
+|||+|||.++++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|.+|++ ++|..+ +|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---CCEEEEEEeC
Confidence 58999999999999999999999999999999984 78999999999999999999998 999988 8999999875
No 290
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1e-15 Score=131.00 Aligned_cols=80 Identities=26% Similarity=0.518 Sum_probs=75.0
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~ 258 (537)
.++|||+||+.++++++|+++|+.||.|..|.|+.+ .++..+|||||+|.+.++|.+|| .|||..+ +|+.|+|.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~V~~ 100 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---LGVPIIVQA 100 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---TTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---CCeEEEEEe
Confidence 478999999999999999999999999999999998 45889999999999999999999 9999998 899999999
Q ss_pred ccCCC
Q 009356 259 ADPKK 263 (537)
Q Consensus 259 a~~~~ 263 (537)
+..+.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 98754
No 291
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=127.40 Aligned_cols=80 Identities=19% Similarity=0.310 Sum_probs=71.4
Q ss_pred CCCCCCcccccCCcC-CCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCc--eEecCCCce
Q 009356 177 VAPPDKLYVGCLSKQ-TSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGT--FTMRGSDQP 253 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~-~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~--~~~~g~g~~ 253 (537)
..+.++|||+||+++ +++++|+++|++||.|.+|.|++ .||||||+|.+.++|.+|++.|++. .+ +|++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l---~Gr~ 93 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWF---QGRC 93 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCS---SSSC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceE---CCEE
Confidence 446789999999998 99999999999999999999986 6899999999999999999998753 45 7899
Q ss_pred EEEEEccCCCC
Q 009356 254 LVVRIADPKKP 264 (537)
Q Consensus 254 l~V~~a~~~~~ 264 (537)
|+|.|+..+..
T Consensus 94 l~V~~a~~~~~ 104 (112)
T 1x4f_A 94 VKVDLSEKYKK 104 (112)
T ss_dssp CEEEEECSCSS
T ss_pred EEEEECccccc
Confidence 99999987643
No 292
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=5.2e-15 Score=125.76 Aligned_cols=94 Identities=30% Similarity=0.541 Sum_probs=78.7
Q ss_pred ceeEEEeeccCCCCC-CCCCCCCcccccCCcC-CCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHH
Q 009356 161 QASIKVRFADGEREH-PVAPPDKLYVGCLSKQ-TSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAI 238 (537)
Q Consensus 161 ~~~l~v~~a~~~~~~-~~~~~~~l~V~nl~~~-~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai 238 (537)
+..|++..+...... .....++|||+||+.. +++++|+++|++||.|..|.| .+|||||+|.+.++|.+|+
T Consensus 7 g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~ 79 (110)
T 1wf1_A 7 GMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAV 79 (110)
T ss_dssp SCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHH
T ss_pred CcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHH
Confidence 455566655433222 2345689999999999 999999999999999999998 5789999999999999999
Q ss_pred HHcCCceEecCCCceEEEEEccCCCC
Q 009356 239 SGLNGTFTMRGSDQPLVVRIADPKKP 264 (537)
Q Consensus 239 ~~lng~~~~~g~g~~l~V~~a~~~~~ 264 (537)
+.|+|..+ +|+.|+|.++..++.
T Consensus 80 ~~l~g~~~---~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 80 LGENGRVL---AGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHTTCEE---TTEECCEEESCCCCS
T ss_pred HHcCCCEE---CCeEEEEEECCCCCC
Confidence 99999998 899999999986543
No 293
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=119.42 Aligned_cols=78 Identities=28% Similarity=0.417 Sum_probs=71.7
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|||.++++++|+++|++||.|..|.+++ +||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 76 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEF---QGKRMHV 76 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCee---CCcEEEE
Confidence 44568999999999999999999999999999999975 4999999999999999999999998 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.++.++..
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99987653
No 294
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.2e-16 Score=131.42 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=76.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCe-eEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHI-EDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I-~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||+++++++|+++|+.||.| ..|.|+.|.+|.++|||||+|.+.++|.+||+. |+..+ +|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---~gr~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL---NGREAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE---TTEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc---CCeEEE
Confidence 3456889999999999999999999999999 899999999999999999999999999999987 99887 899999
Q ss_pred EEEccCCC
Q 009356 256 VRIADPKK 263 (537)
Q Consensus 256 V~~a~~~~ 263 (537)
|.++..+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998654
No 295
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=3.9e-15 Score=123.17 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=73.4
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+||+..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..+ +|+.|+|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 85 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRSVSL 85 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEE
Confidence 4456899999999999999999999999988766 55677999999999999999999999999988 8999999
Q ss_pred EEccCCCCC
Q 009356 257 RIADPKKPR 265 (537)
Q Consensus 257 ~~a~~~~~~ 265 (537)
.++.++..+
T Consensus 86 ~~a~~~~~~ 94 (96)
T 1fjc_A 86 YYTGEKGGT 94 (96)
T ss_dssp EECSSSCCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 296
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.8e-15 Score=117.81 Aligned_cols=76 Identities=28% Similarity=0.467 Sum_probs=70.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHc-CCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL-NGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~l-ng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|++||.|..|.+++ ++|||||+|.+.++|.+|++.| +|..+ +|+.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~---~g~~l~ 80 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIV---NGRRLN 80 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEE---TTEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeE---CCCEEE
Confidence 34568999999999999999999999999999999997 5899999999999999999999 88887 889999
Q ss_pred EEEcc
Q 009356 256 VRIAD 260 (537)
Q Consensus 256 V~~a~ 260 (537)
|.|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 297
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.7e-15 Score=124.86 Aligned_cols=79 Identities=25% Similarity=0.441 Sum_probs=73.6
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+||+..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|+|..+ +|+.|+|.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~ 94 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI---EGHVVKCY 94 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEE---CCcEEEEE
Confidence 45689999999999999999999999999999999984 89999999999999999999999988 89999999
Q ss_pred EccCCCC
Q 009356 258 IADPKKP 264 (537)
Q Consensus 258 ~a~~~~~ 264 (537)
|++++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9988654
No 298
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.1e-15 Score=119.27 Aligned_cols=75 Identities=25% Similarity=0.456 Sum_probs=70.4
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
++|||+|||.++++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|.+|++.++ ..+ +|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~---~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL---DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC---SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc---CCEEEEEEec
Confidence 47999999999999999999999999999999998 578999999999999999999999999 666 7899999986
No 299
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=4.8e-15 Score=124.98 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=74.3
Q ss_pred CCCCCcccccCCcCC------CHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCC
Q 009356 178 APPDKLYVGCLSKQT------SKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSD 251 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~------te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g 251 (537)
...++|||+|||..+ ++++|+++|++||.|..|.|+ ..+|.++|||||+|.+.++|.+|++.|||..+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~---~g 88 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL---DK 88 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC---ST
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc---CC
Confidence 346789999999999 789999999999999999988 56788999999999999999999999999998 78
Q ss_pred c-eEEEEEccCC
Q 009356 252 Q-PLVVRIADPK 262 (537)
Q Consensus 252 ~-~l~V~~a~~~ 262 (537)
+ .|+|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999999754
No 300
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.2e-15 Score=129.02 Aligned_cols=87 Identities=25% Similarity=0.378 Sum_probs=74.4
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
..+.++|||+|||.++++++|+++|+.||.|..+.+..+ .++.++|||||+|.+.++|.+|++.|+|..+ +|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL---YGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC---SSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe---CCcEEE
Confidence 345689999999999999999999999999954433222 3688999999999999999999999999988 899999
Q ss_pred EEEccCCCCCC
Q 009356 256 VRIADPKKPRT 266 (537)
Q Consensus 256 V~~a~~~~~~~ 266 (537)
|.|+.++..+.
T Consensus 99 v~~a~~~~~~~ 109 (115)
T 2cpx_A 99 IEFGKNKKQRS 109 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEccCCCCCC
Confidence 99999875443
No 301
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.4e-15 Score=129.46 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=73.9
Q ss_pred CCCCCCcccccCCcCCCHHHHH----HHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIE----EVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~----~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~ 252 (537)
..+.++|||+||++.+++++|+ ++|++||.|.+|.+.+ ++.++|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l---~gr 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPF---QGN 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCC---TTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEe---CCC
Confidence 3456889999999999999876 6999999999988764 567899999999999999999999999998 799
Q ss_pred eEEEEEccCCCC
Q 009356 253 PLVVRIADPKKP 264 (537)
Q Consensus 253 ~l~V~~a~~~~~ 264 (537)
.|+|.|++.+..
T Consensus 101 ~l~V~~a~~~~~ 112 (127)
T 2a3j_A 101 PLVITFSETPQS 112 (127)
T ss_dssp CCEEEECCCCCH
T ss_pred EEEEEEccCcch
Confidence 999999987653
No 302
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=7.9e-16 Score=125.77 Aligned_cols=79 Identities=29% Similarity=0.527 Sum_probs=71.7
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
++|||+||+.++++++|+++|++||.|..|.++++ .+|.++|||||+|.+.+ |.+|++.|||..+ +|+.|+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---MGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---SSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---CCeEEEEEEc
Confidence 57999999999999999999999999999999998 56889999999999999 9999999999998 8999999999
Q ss_pred cCCC
Q 009356 260 DPKK 263 (537)
Q Consensus 260 ~~~~ 263 (537)
.++.
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 8754
No 303
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=5.8e-15 Score=126.63 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=64.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee----
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS---- 163 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~---- 163 (537)
..++|||+|||+++++++|+++|+.||.|..|+|+.+ |||||+|.+.++|++||+.|||..| .++.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBC---CCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEE---CCcEeeeE
Confidence 4589999999999999999999999999999999886 7999999999999999999999987 3444
Q ss_pred -EEEeeccCC
Q 009356 164 -IKVRFADGE 172 (537)
Q Consensus 164 -l~v~~a~~~ 172 (537)
|+|..+...
T Consensus 85 ~i~v~~~~~~ 94 (115)
T 3beg_B 85 YIRVKVDGPR 94 (115)
T ss_dssp BCEEEECC--
T ss_pred EEEeccCCCC
Confidence 666666543
No 304
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=9.2e-16 Score=128.27 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=75.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+.++++++|+++|+.||.|.. .++.+ .++.++|||||+|.+.++|.+|++ |||..+ +|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---~g~~l~ 88 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---FGNEIK 88 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---TTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---CCcEEE
Confidence 345679999999999999999999999999888 55555 678899999999999999999999 999998 799999
Q ss_pred EEEccCCCCCC
Q 009356 256 VRIADPKKPRT 266 (537)
Q Consensus 256 V~~a~~~~~~~ 266 (537)
|.++.++..+.
T Consensus 89 V~~a~~~~~~~ 99 (101)
T 1fj7_A 89 LEKPKGRDGTR 99 (101)
T ss_dssp EECCSCCCCSS
T ss_pred EEEcCCCCCCC
Confidence 99999876543
No 305
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=8.7e-15 Score=118.61 Aligned_cols=72 Identities=31% Similarity=0.596 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCce
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEH----G-------NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHY 155 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~ 155 (537)
...++|||+|||.++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|++|+ .|+|..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 9999999876 589999999999999999 999998
Q ss_pred eecCCceeEEEee
Q 009356 156 IFPGEQASIKVRF 168 (537)
Q Consensus 156 ~~~g~~~~l~v~~ 168 (537)
+ .++.|+|++
T Consensus 77 ~---~g~~l~V~r 86 (87)
T 2hzc_A 77 F---QGQSLKIRR 86 (87)
T ss_dssp E---TTEECEEEC
T ss_pred E---CCeEEEEeC
Confidence 7 678888875
No 306
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=118.94 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=71.8
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|||.++++++|+++|++||.|..|.|++ +||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 75 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEV---KGKRINV 75 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 34678999999999999999999999999999999974 4999999999999999999999998 8999999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.++.++..
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987644
No 307
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=5e-15 Score=127.65 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=75.4
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCC---eeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGH---IEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~---I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l 254 (537)
...++|||+|||+++++++|+++|+.||. |..|+|+++..|+++|||||+|.+.++|.+||+ +|+..+ +|+.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr~i 90 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM---GHRYI 90 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE---TTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE---CCeEE
Confidence 34678999999999999999999999999 899999999779999999999999999999999 999887 89999
Q ss_pred EEEEccCC
Q 009356 255 VVRIADPK 262 (537)
Q Consensus 255 ~V~~a~~~ 262 (537)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998754
No 308
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-15 Score=123.30 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=73.3
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
.+.++|||+|||.++++++|+++|++||.|..+.|+.+ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---QAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---CEESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---eeEEEee
Confidence 35689999999999999999999999999999999998 5788999999999999999999999999987 7888887
Q ss_pred EEcc
Q 009356 257 RIAD 260 (537)
Q Consensus 257 ~~a~ 260 (537)
.++.
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6654
No 309
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-14 Score=119.09 Aligned_cols=78 Identities=36% Similarity=0.535 Sum_probs=71.1
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCC--CCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPY--GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~--G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l 254 (537)
....++|||+||+..+++++|+++|++| |.|..|.+. +|||||+|.+.++|.+|++.|||..+ +|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 81 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVL---DGSPI 81 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEE---TTEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEe---CCcEE
Confidence 4567899999999999999999999999 889988764 57999999999999999999999998 89999
Q ss_pred EEEEccCCCC
Q 009356 255 VVRIADPKKP 264 (537)
Q Consensus 255 ~V~~a~~~~~ 264 (537)
+|.|++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 310
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.7e-15 Score=124.56 Aligned_cols=76 Identities=18% Similarity=0.367 Sum_probs=71.3
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~ 258 (537)
..++|||+||+.++++++|+++|++||.|..+++.+ ++|||||+|.+.++|.+|++.|||..+ +|+.|+|.|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~~ 97 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPF---QGRNLRTGW 97 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEE---TTEECCCCB
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEEe
Confidence 457899999999999999999999999999999984 789999999999999999999999998 899999999
Q ss_pred ccCC
Q 009356 259 ADPK 262 (537)
Q Consensus 259 a~~~ 262 (537)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9764
No 311
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.55 E-value=9.5e-15 Score=123.80 Aligned_cols=79 Identities=29% Similarity=0.514 Sum_probs=72.4
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+||+.++++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V 97 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSF---ANQPLEV 97 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 4567899999999999999999999999999999987 68999999999999999999999998 8999999
Q ss_pred EEccCCCCC
Q 009356 257 RIADPKKPR 265 (537)
Q Consensus 257 ~~a~~~~~~ 265 (537)
.|++++..+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999876543
No 312
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7e-15 Score=119.63 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||.++++++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|++| ++..+ ...++.|+|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~-~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDL-IIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEE-EETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCc-eeCCEEEEEE
Confidence 4689999999999999999999999999999999875 689999999999999764 44432 2356899999
Q ss_pred eccCCCCC
Q 009356 168 FADGEREH 175 (537)
Q Consensus 168 ~a~~~~~~ 175 (537)
++..+...
T Consensus 74 ~a~~~~~~ 81 (88)
T 1wf0_A 74 NAEPKHNS 81 (88)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 98876544
No 313
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.3e-15 Score=121.19 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=70.0
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCC-eeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCC-ceEecCCCceEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGH-IEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG-TFTMRGSDQPLV 255 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~-I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng-~~~~~g~g~~l~ 255 (537)
...++|||+||+.++++++|+++|++||. |..+.+ . ++|||||+|.+.++|.+|++.||| ..+ +|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~ 76 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-L-----KSGYAFVDYPDQNWAIRAIETLSGKVEL---HGKIME 76 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-E-----ETTEEEECCSCHHHHHHHHHHHTTTCEE---TTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-c-----CCCEEEEEECCHHHHHHHHHHccCCeeE---CCEEEE
Confidence 45689999999999999999999999999 555555 3 589999999999999999999999 887 899999
Q ss_pred EEEccCCCCC
Q 009356 256 VRIADPKKPR 265 (537)
Q Consensus 256 V~~a~~~~~~ 265 (537)
|.|+.++..+
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 314
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=115.47 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=66.1
Q ss_pred CCCE-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009356 88 IPAK-LYVAPVPRTATEED----IRPLFEEH-GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 88 ~~~~-LfVgnLp~~~te~~----L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
+..+ |||+|||+++++++ |+++|++| |.|++| +| |+|||.|.+.++|.+|++.|+|..+ -+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l---~g 73 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV---FG 73 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS---SS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc---CC
Confidence 3455 99999999999987 55899999 599988 33 9999999999999999999999998 57
Q ss_pred eeEEEeeccCCCCCC
Q 009356 162 ASIKVRFADGEREHP 176 (537)
Q Consensus 162 ~~l~v~~a~~~~~~~ 176 (537)
++|+|.++..++...
T Consensus 74 r~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 74 NRIIVSFTPKNRELC 88 (96)
T ss_dssp SCCEEESSCCSCCCC
T ss_pred ceEEEEecCCCccee
Confidence 899999998776543
No 315
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=120.55 Aligned_cols=72 Identities=22% Similarity=0.392 Sum_probs=66.7
Q ss_pred CCcccccCCcCC------CHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc-e
Q 009356 181 DKLYVGCLSKQT------SKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ-P 253 (537)
Q Consensus 181 ~~l~V~nl~~~~------te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~-~ 253 (537)
++|||+|||..+ ++++|+++|++||.|..|.|. ..+|.++|||||+|.+.++|.+|++.|||..+ +|+ .
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL---DKQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---SSSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc---CCcee
Confidence 689999999999 779999999999999999988 56788999999999999999999999999998 788 8
Q ss_pred EEE
Q 009356 254 LVV 256 (537)
Q Consensus 254 l~V 256 (537)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 876
No 316
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.55 E-value=4.2e-15 Score=126.34 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=71.6
Q ss_pred eEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCC-CeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHc
Q 009356 163 SIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYG-HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241 (537)
Q Consensus 163 ~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G-~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~l 241 (537)
.+.+.+... ....++|||+|||+++++++|+++|++|| .|..+.|..+ .++|||||+|.+.++|++||+.|
T Consensus 16 ~~~~~~~~~-----p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~l 87 (111)
T 2jvr_A 16 PRGSHMSKL-----PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERL 87 (111)
T ss_dssp --------------CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHT
T ss_pred ecchhcCCC-----CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHc
Confidence 445555533 23457999999999999999999999999 8999988643 37899999999999999999999
Q ss_pred CCceEecCCCceEEEEEccCC
Q 009356 242 NGTFTMRGSDQPLVVRIADPK 262 (537)
Q Consensus 242 ng~~~~~g~g~~l~V~~a~~~ 262 (537)
||..+ +|+.|+|.++..+
T Consensus 88 ng~~l---~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 88 NNIEF---RGSVITVERDDNP 105 (111)
T ss_dssp TTEEE---TTEEEEEEESCC-
T ss_pred CCCEE---CCeEEEEEECCCC
Confidence 99998 8999999999754
No 317
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.2e-14 Score=120.81 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEeccCCCC-CCccceEEEEEccHHHHHHHHHHhcCceeecCC
Q 009356 87 GIPAKLYVAPVPR-----TATEEDIRPLFEEHGNVIEVVLPKDKRT-GQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGE 160 (537)
Q Consensus 87 ~~~~~LfVgnLp~-----~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~ 160 (537)
.++++|+|+||-. +-++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||..+ .
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---G 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE---C
Confidence 4578999999962 2368999999999999999999998754 78999999999999999999999999988 6
Q ss_pred ceeEEEeeccC
Q 009356 161 QASIKVRFADG 171 (537)
Q Consensus 161 ~~~l~v~~a~~ 171 (537)
++.|+|.++..
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 79999999864
No 318
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=6.5e-15 Score=123.08 Aligned_cols=77 Identities=32% Similarity=0.544 Sum_probs=72.3
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEcc
Q 009356 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~ 260 (537)
++|||+|||.++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.|+|..+ +|+.|+|.+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVI---CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCS---SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeE---CCcEEEEEEcc
Confidence 47999999999999999999999999999999987 789999999999999999999999987 89999999998
Q ss_pred CCCC
Q 009356 261 PKKP 264 (537)
Q Consensus 261 ~~~~ 264 (537)
.+..
T Consensus 74 ~~~~ 77 (101)
T 2hvz_A 74 GMPR 77 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
No 319
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=4.7e-14 Score=121.98 Aligned_cols=77 Identities=25% Similarity=0.298 Sum_probs=67.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccce-EEEEEccHHHHHHHHHHhcCceeecCCceeEEEee
Q 009356 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGY-CFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRF 168 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 168 (537)
..|||+||++.+++++|+++|++||.|++|+|+.. .|| |||+|.+.++|++|++.|||..|.+ +.+.|+|.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g-~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYA-GCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBT-TBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCeEEEEEE
Confidence 45689999999999999999999999999998652 286 9999999999999999999998743 347899999
Q ss_pred ccCCC
Q 009356 169 ADGER 173 (537)
Q Consensus 169 a~~~~ 173 (537)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 97654
No 320
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.7e-14 Score=117.56 Aligned_cols=79 Identities=32% Similarity=0.426 Sum_probs=71.5
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|| ++++++|+++|++||.|..|.|.+ .+|||||+|.+.++|.+|++.|+|..+ +|+.|+|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~v 81 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQV---ESVQLKV 81 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEE---TTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEE
Confidence 446789999996 899999999999999999999853 789999999999999999999999998 8999999
Q ss_pred EEccCCCCC
Q 009356 257 RIADPKKPR 265 (537)
Q Consensus 257 ~~a~~~~~~ 265 (537)
.|+.++..+
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 321
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=128.84 Aligned_cols=80 Identities=36% Similarity=0.534 Sum_probs=74.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+|||.++++++|+++|++||.|..+.|+++ .++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 136 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIR 136 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---TTEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 446789999999999999999999999999999999998 6788999999999999999999999999988 899999
Q ss_pred EEEc
Q 009356 256 VRIA 259 (537)
Q Consensus 256 V~~a 259 (537)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 322
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=120.52 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+||+.++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~ 89 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRL---GTDTLRVA 89 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCS---SSSCCEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEE
Confidence 4468999999999999999999999999997 666653 5789999999999999999999999998 89999999
Q ss_pred EccCCCC
Q 009356 258 IADPKKP 264 (537)
Q Consensus 258 ~a~~~~~ 264 (537)
++.++..
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987653
No 323
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=2.3e-14 Score=118.91 Aligned_cols=76 Identities=26% Similarity=0.486 Sum_probs=70.7
Q ss_pred CCCCCCcccccCCc-CCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSK-QTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~-~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
....++|||+||+. ++++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 88 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMN---FGKKLI 88 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEE---TTEECE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 45678999999998 99999999999999999999883 78999999999999999999999998 899999
Q ss_pred EEEccCC
Q 009356 256 VRIADPK 262 (537)
Q Consensus 256 V~~a~~~ 262 (537)
|.+++.+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9999865
No 324
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=122.84 Aligned_cols=78 Identities=13% Similarity=0.253 Sum_probs=72.4
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
.++|||+|||+++++++|+++|+.| .|..|.|++|..|+++|||||+|.+.++|.+|| .+|+..+ +||.|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM---IQRYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE---TTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE---CCeEEEEEEC
Confidence 4689999999999999999999999 899999999988999999999999999999999 6999888 8999999888
Q ss_pred cCC
Q 009356 260 DPK 262 (537)
Q Consensus 260 ~~~ 262 (537)
..+
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 325
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=9.9e-15 Score=136.94 Aligned_cols=80 Identities=21% Similarity=0.373 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..++|||+|||.++++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.++|++|++.++. .+ .++.|+|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~---~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQ-KY---KETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTC-EE---TTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCC-eE---CCEEEEEE
Confidence 45899999999999999999999999999999999987 699999999999999999999976654 55 56899999
Q ss_pred eccCC
Q 009356 168 FADGE 172 (537)
Q Consensus 168 ~a~~~ 172 (537)
+....
T Consensus 183 ~~~~y 187 (193)
T 2voo_A 183 FKDDY 187 (193)
T ss_dssp ETTTC
T ss_pred EhHHH
Confidence 87654
No 326
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=7.5e-15 Score=121.63 Aligned_cols=82 Identities=29% Similarity=0.521 Sum_probs=74.8
Q ss_pred CCCCCcccccCCcCCCHHHHH----HHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce
Q 009356 178 APPDKLYVGCLSKQTSKKEIE----EVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~----~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~ 253 (537)
.+.++|||+|||.++++++|+ ++|++||.|..|.+.+ +|.++|||||+|.+.++|.+|++.|||..+ +|+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 80 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPF---YDKP 80 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE---CCcE
Confidence 456899999999999999999 9999999999999874 466889999999999999999999999998 8999
Q ss_pred EEEEEccCCCC
Q 009356 254 LVVRIADPKKP 264 (537)
Q Consensus 254 l~V~~a~~~~~ 264 (537)
|+|.|+.++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987653
No 327
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=7.2e-16 Score=132.45 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=77.6
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeE--------EEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEec
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIED--------IFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMR 248 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~--------v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~ 248 (537)
.+.++|||+||+.++++++|+++|++||.|.. |.|+.+ .++.++|||||+|.+.++|.+|++.|||..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 82 (116)
Confidence 45689999999999999999999999999998 889988 6788999999999999999999999999988
Q ss_pred CCCceEEEEEccCCCC
Q 009356 249 GSDQPLVVRIADPKKP 264 (537)
Q Consensus 249 g~g~~l~V~~a~~~~~ 264 (537)
+|+.|+|.++.++..
T Consensus 83 -~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 -SGNPIKVSFATRRAD 97 (116)
Confidence 799999999987653
No 328
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=2.2e-14 Score=129.35 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
..+|||+||++.+++++|+++|++||.|++|.|+.+. .+|||||+|.+.++|.+|++.|||..++. +++.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEEEEe
Confidence 4568999999999999999999999999999997642 57899999999999999999999999742 2499999999
Q ss_pred cCCC
Q 009356 260 DPKK 263 (537)
Q Consensus 260 ~~~~ 263 (537)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 9764
No 329
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.52 E-value=3.2e-14 Score=123.69 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=70.0
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceE-EEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~-afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
-.|||+||++.+|+++|+++|++||.|.+|.|+.+ .+|| |||+|.+.++|.+|++.|||..++. +.+.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEEEEec
Confidence 46889999999999999999999999999998875 4678 9999999999999999999999853 2489999999
Q ss_pred cCCC
Q 009356 260 DPKK 263 (537)
Q Consensus 260 ~~~~ 263 (537)
+++.
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 330
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=2.9e-14 Score=123.35 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=69.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 85 DSGIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
.....++|||+|| ++++++|+++|+.||.|.+|+|. +++|||||+|.+.++|++||+.|+|..+ .++.|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~l 103 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQL 103 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC---SSCBC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 3456799999996 79999999999999999999985 4579999999999999999999999987 67899
Q ss_pred EEeeccCCCC
Q 009356 165 KVRFADGERE 174 (537)
Q Consensus 165 ~v~~a~~~~~ 174 (537)
+|.++.....
T Consensus 104 ~V~~a~~~~~ 113 (121)
T 2bz2_A 104 KVNIARKQPM 113 (121)
T ss_dssp EEEECCSSCC
T ss_pred EEEEeCCCCC
Confidence 9999976643
No 331
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.4e-15 Score=127.69 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=73.1
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
...++|||+|||+++++++|+++|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+||+ |||..+ +|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr~i~V 98 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM---GNRFIQV 98 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---TTSCBEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE---CCcEEEE
Confidence 45689999999999999999999999999998555544 789999999999999999999999 999988 8999999
Q ss_pred EEccCC
Q 009356 257 RIADPK 262 (537)
Q Consensus 257 ~~a~~~ 262 (537)
.++..+
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999764
No 332
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.5e-14 Score=119.70 Aligned_cols=78 Identities=27% Similarity=0.528 Sum_probs=70.5
Q ss_pred CCCCCCcccccCCc-CCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 177 VAPPDKLYVGCLSK-QTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 177 ~~~~~~l~V~nl~~-~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
..+.++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|+|..+ .|+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 76 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMN---FGKKLI 76 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSC---BTTTBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCee---CCcEEE
Confidence 34578999999998 99999999999999999999984 68999999999999999999999987 789999
Q ss_pred EEEccCCCC
Q 009356 256 VRIADPKKP 264 (537)
Q Consensus 256 V~~a~~~~~ 264 (537)
|.++..+..
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999987643
No 333
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=123.21 Aligned_cols=75 Identities=23% Similarity=0.218 Sum_probs=70.5
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
.++|||+|||.++++++|+++|++||.|..|.|.+ .+|||||+|.+.++|.+|++.|||..+ +|+.|+|.|+
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~~a 81 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKF---HHVPLYLEWA 81 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBS---SSSBCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE---CCeEEEEEEC
Confidence 46899999999999999999999999999999876 789999999999999999999999998 8999999999
Q ss_pred cCC
Q 009356 260 DPK 262 (537)
Q Consensus 260 ~~~ 262 (537)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 764
No 334
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=5.6e-15 Score=125.00 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=75.6
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCC---eeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGH---IEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~---I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~ 253 (537)
....++|||+|||+++++++|+++|+.||. |..|.|+.+..|+++|||||+|.+.++|.+||+ +++..+ +|+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~---~gr~ 83 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM---GQRY 83 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCS---SSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCccee---CCeE
Confidence 345688999999999999999999999988 899999999779999999999999999999999 999887 8999
Q ss_pred EEEEEccCC
Q 009356 254 LVVRIADPK 262 (537)
Q Consensus 254 l~V~~a~~~ 262 (537)
|+|.++.++
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998764
No 335
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=125.44 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=72.6
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCe----eEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHI----EDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I----~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l 254 (537)
..++|||+|||+++|+++|+++|+.||.| ..|.|+.+.+|+++|||||+|.+.++|.+||+. |+..+ ++|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l---~gR~i 97 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL---GKRYI 97 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES---SSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee---CCeEE
Confidence 45789999999999999999999999875 689999998899999999999999999999996 88776 78999
Q ss_pred EEEEccCC
Q 009356 255 VVRIADPK 262 (537)
Q Consensus 255 ~V~~a~~~ 262 (537)
.|..+..+
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988654
No 336
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.49 E-value=7.2e-15 Score=115.62 Aligned_cols=74 Identities=26% Similarity=0.434 Sum_probs=68.5
Q ss_pred CcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
+|||+|||.++++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|.+|++. ++..+ +|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV---GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB---TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE---CCEEEEEEEC
Confidence 5899999999999999999999999999999988 5688999999999999999999995 77776 8999999875
No 337
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.49 E-value=4.3e-14 Score=121.01 Aligned_cols=81 Identities=26% Similarity=0.382 Sum_probs=74.1
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+|||..+++++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+|++.|||..+ +|+.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v~ 80 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNV---SNRYLVVL 80 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBS---SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEE
Confidence 35679999999999999999999999999999999876 44689999999999999999999999998 89999999
Q ss_pred EccCCC
Q 009356 258 IADPKK 263 (537)
Q Consensus 258 ~a~~~~ 263 (537)
|+.++.
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 998643
No 338
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=5.7e-14 Score=114.27 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=69.7
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~ 258 (537)
..++|||+|||.++++++|+++|++| .|..+.|. .++|||||+|.+.++|.+|++.|||..+ +|+.|+|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V~~ 74 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSF---RGKDLIVQL 74 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEE---TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeE---CCcEEEEEE
Confidence 45789999999999999999999999 99999885 4899999999999999999999999998 899999999
Q ss_pred ccCC
Q 009356 259 ADPK 262 (537)
Q Consensus 259 a~~~ 262 (537)
+..+
T Consensus 75 a~~~ 78 (88)
T 1wg1_A 75 QPTD 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 339
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-14 Score=121.12 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=70.8
Q ss_pred CCCCCCccc--ccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceE--ecCCCc
Q 009356 177 VAPPDKLYV--GCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFT--MRGSDQ 252 (537)
Q Consensus 177 ~~~~~~l~V--~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~--~~g~g~ 252 (537)
..+.++||| +||++++++++|+++|++||.|..|.|+. .||||||+|.+.++|.+|++.|||..+ ..+.++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 345678999 77999999999999999999999998865 489999999999999999999999976 223489
Q ss_pred eEEEEEccCC
Q 009356 253 PLVVRIADPK 262 (537)
Q Consensus 253 ~l~V~~a~~~ 262 (537)
+|.|.|+...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999999754
No 340
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=126.74 Aligned_cols=86 Identities=24% Similarity=0.401 Sum_probs=74.1
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEE------EEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCC
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI------FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGS 250 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v------~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~ 250 (537)
..+.++|||+||+.++++++|+++|+.||.|..+ .+....+|.++|||||+|.+.++|.+|++.|||..+ +
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL---F 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe---C
Confidence 4456899999999999999999999999998874 122224688999999999999999999999999998 8
Q ss_pred CceEEEEEccCCCCC
Q 009356 251 DQPLVVRIADPKKPR 265 (537)
Q Consensus 251 g~~l~V~~a~~~~~~ 265 (537)
|+.|.|.|++....+
T Consensus 119 g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 119 GKPMVVQFARSARPK 133 (143)
T ss_dssp TEECEEEECCCSCC-
T ss_pred CcEEEEEECCCCCCc
Confidence 999999999876544
No 341
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.3e-14 Score=114.45 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=67.7
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
...++|||+||+.++++++|+++|+.||.|..| +.+ .++. ||||+|.+.++|.+|++ |+|..+ +|+.|.|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~---~g~~l~V 76 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL---GGHRLRV 76 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE---TTEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE---CCEEEEE
Confidence 345789999999999999999999999999987 444 3443 99999999999999999 999998 8999999
Q ss_pred EEccCCC
Q 009356 257 RIADPKK 263 (537)
Q Consensus 257 ~~a~~~~ 263 (537)
.++..+.
T Consensus 77 ~~a~~~~ 83 (94)
T 2e5g_A 77 RPREQKE 83 (94)
T ss_dssp BCSCCSC
T ss_pred EECCcCC
Confidence 9887654
No 342
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=1.9e-14 Score=120.43 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=74.4
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~ 258 (537)
..++|||+||+.++++++|+++|+.||.|..|.|+.+.+|.++|||||+|.+.++|.+|++ ++..+ +|+.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~---~g~~l~v~~ 82 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINF---HGKKLKLGP 82 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEE---TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeE---CCEEEEEEE
Confidence 3478999999999999999999999999999999999888999999999999999999998 88887 899999999
Q ss_pred ccCCC
Q 009356 259 ADPKK 263 (537)
Q Consensus 259 a~~~~ 263 (537)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 98654
No 343
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=3.5e-14 Score=131.24 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=77.4
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+||+..+++++|+++|+.||.|+.|.|+.+.++.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---~Gr~l~V~ 162 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---DGRPMDIQ 162 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC---SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---CCEEEEEE
Confidence 456899999999999999999999999999999999998889999999999999999999999999987 89999999
Q ss_pred EccCC
Q 009356 258 IADPK 262 (537)
Q Consensus 258 ~a~~~ 262 (537)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99764
No 344
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.48 E-value=5.1e-14 Score=120.71 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=66.2
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce-----
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP----- 253 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~----- 253 (537)
..++|||+||++++++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|||..+ +|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~~~~~~ 85 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGETAY 85 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBC---CCTTSCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEE---CCcEeeeEE
Confidence 4589999999999999999999999999999999875 8999999999999999999999998 7888
Q ss_pred EEEEEccCCC
Q 009356 254 LVVRIADPKK 263 (537)
Q Consensus 254 l~V~~a~~~~ 263 (537)
|+|..+.++.
T Consensus 86 i~v~~~~~~~ 95 (115)
T 3beg_B 86 IRVKVDGPRS 95 (115)
T ss_dssp CEEEECC---
T ss_pred EEeccCCCCC
Confidence 7777766543
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.47 E-value=6.3e-14 Score=114.37 Aligned_cols=79 Identities=27% Similarity=0.448 Sum_probs=64.4
Q ss_pred CCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 177 VAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
....++|||+|||+++++++|+++|++||.|.+|.|+++ +||||||+|.+.++|.+ +++..+ .++|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~-~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDL-IIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEE-EETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCc-ccCCEEEEE
Confidence 345689999999999999999999999999999999985 89999999999999883 566643 336899999
Q ss_pred EEccCCCC
Q 009356 257 RIADPKKP 264 (537)
Q Consensus 257 ~~a~~~~~ 264 (537)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987653
No 346
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.46 E-value=7.6e-14 Score=119.32 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=70.2
Q ss_pred CCcccccC----CcCCCHHHHHHHHcCCCCeeEEEEEee-cCCCcceEEEEEEcC----HHH----HHHHHH--HcCCce
Q 009356 181 DKLYVGCL----SKQTSKKEIEEVFSPYGHIEDIFIVRD-ELKQSRGCAFVQFSH----REM----ALAAIS--GLNGTF 245 (537)
Q Consensus 181 ~~l~V~nl----~~~~te~~L~~~F~~~G~I~~v~i~~d-~~g~~rg~afV~F~~----~~~----A~~Ai~--~lng~~ 245 (537)
..|||+|| ++.+++++|+++|+.||+|.++.++.| .+|.++|||||+|.| .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 999999999999999999999999999 689999999999996 322 899998 789999
Q ss_pred EecCCCceEEEEEccC
Q 009356 246 TMRGSDQPLVVRIADP 261 (537)
Q Consensus 246 ~~~g~g~~l~V~~a~~ 261 (537)
+ +|+.|+|.+.+.
T Consensus 83 I---~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 I---MGFKFEVILNKH 95 (136)
T ss_dssp E---TTEEEEEEECCT
T ss_pred e---cCcEEEEEECcc
Confidence 8 899999998764
No 347
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=113.77 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEE-EEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDI-FIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVV 256 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v-~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V 256 (537)
...++|||+|||.++++++|+++|++||.|..| .|+.+. ..+.|||+|.+.++|.+|++.|||..+ +|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V 86 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQL---ENFTLKV 86 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBC---SSCBCEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 346899999999999999999999999999999 477763 223499999999999999999999998 8999999
Q ss_pred EEccCCC
Q 009356 257 RIADPKK 263 (537)
Q Consensus 257 ~~a~~~~ 263 (537)
.++.++.
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9999874
No 348
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.5e-13 Score=118.89 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=67.1
Q ss_pred CcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceE-EEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEcc
Q 009356 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGC-AFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIAD 260 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~-afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~ 260 (537)
.|||+||++.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|.+|++.|||..+. |..+.|+|.|++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~-g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIY-AGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCB-TTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEec-CCCeEEEEEEec
Confidence 4689999999999999999999999999999762 386 999999999999999999999973 123799999998
Q ss_pred CCC
Q 009356 261 PKK 263 (537)
Q Consensus 261 ~~~ 263 (537)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=3.7e-14 Score=123.18 Aligned_cols=80 Identities=25% Similarity=0.234 Sum_probs=71.5
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCee--EEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIE--DIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLV 255 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~--~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~ 255 (537)
...++|||+|||+++++++|+++|+.| .|. .|.|++|..|+++|||||+|.+.++|.+||+. ++..+ +||.|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l---~gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI---GHRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB---TTBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE---CCEEEE
Confidence 346789999999999999999999999 677 89999997799999999999999999999985 66776 799999
Q ss_pred EEEccCC
Q 009356 256 VRIADPK 262 (537)
Q Consensus 256 V~~a~~~ 262 (537)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 350
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.9e-14 Score=113.36 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=66.7
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEE
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRI 258 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~ 258 (537)
..++|||+|||.++++++|+++|++||.|..|.|+++ ++|||||+|.+.++|++| ++..+ .++++.|+|.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~----~~~~~-~~~g~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL----CGEDL-IIKGISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT----TTCEE-EETTEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH----hcCCc-eeCCEEEEEEe
Confidence 4689999999999999999999999999999999875 789999999999999754 44432 33789999999
Q ss_pred ccCCCCC
Q 009356 259 ADPKKPR 265 (537)
Q Consensus 259 a~~~~~~ 265 (537)
+.++..+
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=5.3e-13 Score=125.10 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=72.8
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEc
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIA 259 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a 259 (537)
.++|||+|||.++++++|+++|+.||.|..|+|.++.++.++|||||+|.+.++|.+|++.++. .+ +|+.|.|.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~---~Gr~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KY---KETDLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EE---TTEECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eE---CCEEEEEEEh
Confidence 4789999999999999999999999999999999998899999999999999999999987654 65 7999999998
Q ss_pred cCC
Q 009356 260 DPK 262 (537)
Q Consensus 260 ~~~ 262 (537)
+..
T Consensus 185 ~~y 187 (193)
T 2voo_A 185 DDY 187 (193)
T ss_dssp TTC
T ss_pred HHH
Confidence 764
No 352
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=2.5e-13 Score=130.59 Aligned_cols=82 Identities=22% Similarity=0.322 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009356 86 SGIPAKLYVAPVPRTA---------TEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
....++||||||+.++ +|++|+++|++||.|++|+|+.+ ||||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 79999999999999999999864 69999999999999999999999987
Q ss_pred ec---------CCceeEEEeeccCCC
Q 009356 157 FP---------GEQASIKVRFADGER 173 (537)
Q Consensus 157 ~~---------g~~~~l~v~~a~~~~ 173 (537)
+. +.++.|.|.|+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 31 246889999997653
No 353
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.43 E-value=3.6e-13 Score=113.34 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCCCcccccCCc-----CCCHHHHHHHHcCCCCeeEEEEEeec--CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCC
Q 009356 178 APPDKLYVGCLSK-----QTSKKEIEEVFSPYGHIEDIFIVRDE--LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGS 250 (537)
Q Consensus 178 ~~~~~l~V~nl~~-----~~te~~L~~~F~~~G~I~~v~i~~d~--~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~ 250 (537)
.++++|+|+||.. +-++++|+++|++||.|.+|.|++++ ++.++|||||+|.+.++|.+|++.|||+.+ +
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---G 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE---C
Confidence 4567899999863 24789999999999999999999984 367899999999999999999999999998 8
Q ss_pred CceEEEEEccCC
Q 009356 251 DQPLVVRIADPK 262 (537)
Q Consensus 251 g~~l~V~~a~~~ 262 (537)
||.|.|.|+...
T Consensus 83 Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 83 GRVVKACFYNLD 94 (105)
T ss_dssp TEECEEEECCHH
T ss_pred CcEEEEEEcCHH
Confidence 999999999753
No 354
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=4.1e-13 Score=112.98 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=71.0
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEeccCCCC--CCccceEEEEEccHHHHHHHHHHhcCc
Q 009356 87 GIPAKLYVAPV--PRTAT--------EEDIRPLFEEHGNVIEVVLPKDKRT--GQQQGYCFVKFTIFEEAGNAIRALNGH 154 (537)
Q Consensus 87 ~~~~~LfVgnL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~t--g~~kG~aFV~F~~~e~A~~Ai~~l~g~ 154 (537)
.+++.|.|.|+ |.++. ++||++.|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 44443 3689999999999999999998755 478999999999999999999999999
Q ss_pred eeecCCceeEEEeeccC
Q 009356 155 YIFPGEQASIKVRFADG 171 (537)
Q Consensus 155 ~~~~g~~~~l~v~~a~~ 171 (537)
.+ .+|.|++.+...
T Consensus 83 ~f---~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KF---ANRVVVTKYCDP 96 (105)
T ss_dssp EE---TTEECEEEEECH
T ss_pred Ee---CCCEEEEEEeCH
Confidence 88 679999998754
No 355
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.9e-13 Score=110.51 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=65.4
Q ss_pred CCCC-cccccCCcCCCHHH----HHHHHcCCC-CeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc
Q 009356 179 PPDK-LYVGCLSKQTSKKE----IEEVFSPYG-HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252 (537)
Q Consensus 179 ~~~~-l~V~nl~~~~te~~----L~~~F~~~G-~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~ 252 (537)
++.+ |||+||++++++++ |+++|++|| .|.+| ++ |+|||.|.+.++|.+|++.|+|..+ .||
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l---~gr 74 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDV---FGN 74 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCS---SSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCcc---CCc
Confidence 4455 99999999999988 558999995 99988 22 9999999999999999999999998 799
Q ss_pred eEEEEEccCCCC
Q 009356 253 PLVVRIADPKKP 264 (537)
Q Consensus 253 ~l~V~~a~~~~~ 264 (537)
+|+|.||+.+..
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999997654
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-12 Score=110.95 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=69.4
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcC
Q 009356 85 DSGIPAKLYVAPVPRTAT-----------EEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG 153 (537)
Q Consensus 85 ~~~~~~~LfVgnLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g 153 (537)
...++++|+|.||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345679999999944332 5899999999999999966 554 3799999999999999999999999
Q ss_pred ceeecCCceeEEEeeccCCCC
Q 009356 154 HYIFPGEQASIKVRFADGERE 174 (537)
Q Consensus 154 ~~~~~g~~~~l~v~~a~~~~~ 174 (537)
..+ .++.|+|.++..+..
T Consensus 87 ~~~---~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWF---GGRQITAQAWDGTTD 104 (112)
T ss_dssp CEE---TTEECEEEECCSCCC
T ss_pred CEE---CCcEEEEEEeCCCCC
Confidence 988 679999999876543
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=3e-13 Score=116.93 Aligned_cols=77 Identities=32% Similarity=0.455 Sum_probs=70.3
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEE
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVR 257 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~ 257 (537)
...++|||+|+ ++++++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~l~V~ 106 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQV---ESVQLKVN 106 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBC---SSCBCEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEEE
Confidence 45789999996 699999999999999999999863 789999999999999999999999987 89999999
Q ss_pred EccCCCC
Q 009356 258 IADPKKP 264 (537)
Q Consensus 258 ~a~~~~~ 264 (537)
|+.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987643
No 358
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3e-13 Score=115.66 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=64.9
Q ss_pred CCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec-C---CCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce
Q 009356 178 APPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE-L---KQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253 (537)
Q Consensus 178 ~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~-~---g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~ 253 (537)
...++|||+||+.++++++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|.+||+.|++ + +|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~---~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E---DGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E---TTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c---CCcE
Confidence 3568999999999999999999999999999 8777773 3 68999999999999999999999943 3 5566
Q ss_pred EEEEEcc
Q 009356 254 LVVRIAD 260 (537)
Q Consensus 254 l~V~~a~ 260 (537)
|.+..+.
T Consensus 80 ~~~~~~~ 86 (114)
T 2dnl_A 80 YLCVSSP 86 (114)
T ss_dssp EEEECCS
T ss_pred EEeccCC
Confidence 6665544
No 359
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=1e-12 Score=132.94 Aligned_cols=80 Identities=23% Similarity=0.406 Sum_probs=68.3
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecC--C
Q 009356 85 DSGIPAKLYVAP--VPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG--E 160 (537)
Q Consensus 85 ~~~~~~~LfVgn--Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g--~ 160 (537)
...++++||||| |+.++||++|+++|++||.|.+|++.. +||||||+|.+.++|++||+.|||+.++.. +
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345678999999 578999999999999999999988754 469999999999999999999999998643 3
Q ss_pred ceeEEEeecc
Q 009356 161 QASIKVRFAD 170 (537)
Q Consensus 161 ~~~l~v~~a~ 170 (537)
+..|.+.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 3467888774
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=1.9e-13 Score=114.86 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=63.2
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009356 94 VAPVPRTATEEDIRPLF------------EEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 94 VgnLp~~~te~~L~~~F------------~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
+.||+.++++++|++.| ++||.|.+|+|++++ +|+++|||||+|.+.++|.+|++.|||..+ .+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~---~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF---NG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE---TT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE---CC
Confidence 56777788887777666 999999999999987 589999999999999999999999999987 67
Q ss_pred eeEEEeec
Q 009356 162 ASIKVRFA 169 (537)
Q Consensus 162 ~~l~v~~a 169 (537)
+.|+|.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 89988875
No 361
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=6.2e-13 Score=107.54 Aligned_cols=71 Identities=21% Similarity=0.424 Sum_probs=65.6
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCC----C-------CeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEe
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPY----G-------HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~ 247 (537)
..++|||+|||.++++++|+++|++| | .|.++.+.+ .+|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A~-~l~g~~~- 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIF- 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHHG-GGTTCEE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHHH-hcCCCEE-
Confidence 35789999999999999999999999 8 899999886 4899999999999999999 9999998
Q ss_pred cCCCceEEEEE
Q 009356 248 RGSDQPLVVRI 258 (537)
Q Consensus 248 ~g~g~~l~V~~ 258 (537)
+|+.|+|+.
T Consensus 78 --~g~~l~V~r 86 (87)
T 2hzc_A 78 --QGQSLKIRR 86 (87)
T ss_dssp --TTEECEEEC
T ss_pred --CCeEEEEeC
Confidence 899999974
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=1.3e-12 Score=112.24 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=69.9
Q ss_pred CCCEEEEcCCC--CCC---CHHHHHHHhhccCCeEEEEeccCCC----CCCccceEEEEEccHHHHHHHHHHhcCceeec
Q 009356 88 IPAKLYVAPVP--RTA---TEEDIRPLFEEHGNVIEVVLPKDKR----TGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP 158 (537)
Q Consensus 88 ~~~~LfVgnLp--~~~---te~~L~~~F~~~G~I~~v~i~~d~~----tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~ 158 (537)
++++|+|+|+- .++ -++||++.|++||.|.+|+|++++. +++++|||||+|.+.++|.+|++.|||..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 46899999983 222 3689999999999999999999864 467889999999999999999999999987
Q ss_pred CCceeEEEeeccC
Q 009356 159 GEQASIKVRFADG 171 (537)
Q Consensus 159 g~~~~l~v~~a~~ 171 (537)
.+|.|++.+...
T Consensus 97 -~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 -AGRKVVAEVYDQ 108 (118)
T ss_dssp -TTEECEEEEECH
T ss_pred -CCcEEEEEEcCh
Confidence 679999998753
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=1.1e-12 Score=126.23 Aligned_cols=82 Identities=27% Similarity=0.372 Sum_probs=71.3
Q ss_pred CCCCCCcccccCCcCC---------CHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEe
Q 009356 177 VAPPDKLYVGCLSKQT---------SKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~---------te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~ 247 (537)
....++|||+||+..+ ++++|+++|++||.|++|+|+. ++|||||+|.+.++|+.|++.|+|..++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3457899999999998 7999999999999999999997 6899999999999999999999999873
Q ss_pred c---------CCCceEEEEEccCCC
Q 009356 248 R---------GSDQPLVVRIADPKK 263 (537)
Q Consensus 248 ~---------g~g~~l~V~~a~~~~ 263 (537)
. +.|+.|.|.||..+.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 1 257999999998654
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.2e-12 Score=107.03 Aligned_cols=81 Identities=17% Similarity=0.284 Sum_probs=69.4
Q ss_pred CCCCCCcccccCCcCC-----------CHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCce
Q 009356 177 VAPPDKLYVGCLSKQT-----------SKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTF 245 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~~-----------te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~ 245 (537)
..+.++|+|.||.... ++++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|++.|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4567889999995433 26899999999999999966 443 379999999999999999999999999
Q ss_pred EecCCCceEEEEEccCCC
Q 009356 246 TMRGSDQPLVVRIADPKK 263 (537)
Q Consensus 246 ~~~g~g~~l~V~~a~~~~ 263 (537)
+ +|+.|+|.|+.++.
T Consensus 89 ~---~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 F---GGRQITAQAWDGTT 103 (112)
T ss_dssp E---TTEECEEEECCSCC
T ss_pred E---CCcEEEEEEeCCCC
Confidence 8 89999999998754
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=102.60 Aligned_cols=67 Identities=19% Similarity=0.412 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCC
Q 009356 99 RTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREH 175 (537)
Q Consensus 99 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 175 (537)
.++++++|+++|++||.|.+|+|+ +++||||||+|.+.++|++||+.+++ + .++.|+|.|++.....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~---~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L---VDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C---SSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C---CCCeEEEEEccCCCCC
Confidence 468999999999999999999997 36789999999999999999988655 2 4578999998766443
No 366
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=99.31 E-value=5.3e-13 Score=89.20 Aligned_cols=34 Identities=44% Similarity=0.918 Sum_probs=31.3
Q ss_pred CCCCCceeeCCCCCeeeeeCCcccccccCChhhH
Q 009356 432 PECDWSEHTCPDGNKYYYNCETCESRWDKPEEYL 465 (537)
Q Consensus 432 ~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~ 465 (537)
..+.|.|++++|||.||||..|++|+||||++|+
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~k 37 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSSCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCccC
Confidence 4567999999999999999999999999999874
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=1.1e-12 Score=110.08 Aligned_cols=72 Identities=24% Similarity=0.410 Sum_probs=64.4
Q ss_pred cccCCcCCCHHHHHHHH------------cCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc
Q 009356 185 VGCLSKQTSKKEIEEVF------------SPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ 252 (537)
Q Consensus 185 V~nl~~~~te~~L~~~F------------~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~ 252 (537)
+.+|+..+++++|++.| ++||.|.+|.|+++..++++|||||+|.+.++|.+|++.|||..+ +||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~---~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF---NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE---TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE---CCE
Confidence 56787777777776665 999999999999987788999999999999999999999999998 899
Q ss_pred eEEEEEc
Q 009356 253 PLVVRIA 259 (537)
Q Consensus 253 ~l~V~~a 259 (537)
.|+|.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.30 E-value=3.7e-12 Score=107.10 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=69.1
Q ss_pred CCCCcccccCC--cCC--------CHHHHHHHHcCCCCeeEEEEEeecC---CCcceEEEEEEcCHHHHHHHHHHcCCce
Q 009356 179 PPDKLYVGCLS--KQT--------SKKEIEEVFSPYGHIEDIFIVRDEL---KQSRGCAFVQFSHREMALAAISGLNGTF 245 (537)
Q Consensus 179 ~~~~l~V~nl~--~~~--------te~~L~~~F~~~G~I~~v~i~~d~~---g~~rg~afV~F~~~~~A~~Ai~~lng~~ 245 (537)
+++.|.|.|+- .++ .+++|++.|++||.|.+|.|+++.. +.++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45678888873 233 3479999999999999999998853 3679999999999999999999999999
Q ss_pred EecCCCceEEEEEccCC
Q 009356 246 TMRGSDQPLVVRIADPK 262 (537)
Q Consensus 246 ~~~g~g~~l~V~~a~~~ 262 (537)
+ +||.|+|.|+...
T Consensus 84 f---~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 F---ANRVVVTKYCDPD 97 (105)
T ss_dssp E---TTEECEEEEECHH
T ss_pred e---CCCEEEEEEeCHH
Confidence 8 8999999998653
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.27 E-value=9.2e-12 Score=106.83 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=68.8
Q ss_pred CCCCcccccCCc--C---CCHHHHHHHHcCCCCeeEEEEEeecC-----CCcceEEEEEEcCHHHHHHHHHHcCCceEec
Q 009356 179 PPDKLYVGCLSK--Q---TSKKEIEEVFSPYGHIEDIFIVRDEL-----KQSRGCAFVQFSHREMALAAISGLNGTFTMR 248 (537)
Q Consensus 179 ~~~~l~V~nl~~--~---~te~~L~~~F~~~G~I~~v~i~~d~~-----g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~ 248 (537)
++++|+|.|+-. + -.++||++.|++||.|.+|.|+++.. +.++|++||+|.+.++|.+|++.|||+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 456788888742 2 23689999999999999999999843 46789999999999999999999999998
Q ss_pred CCCceEEEEEccC
Q 009356 249 GSDQPLVVRIADP 261 (537)
Q Consensus 249 g~g~~l~V~~a~~ 261 (537)
+||.|+|.|+..
T Consensus 97 -~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 -AGRKVVAEVYDQ 108 (118)
T ss_dssp -TTEECEEEEECH
T ss_pred -CCcEEEEEEcCh
Confidence 899999999865
No 370
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=99.25 E-value=2.2e-12 Score=87.61 Aligned_cols=33 Identities=48% Similarity=0.928 Sum_probs=30.2
Q ss_pred CCCCCceeeCCCCCeeeeeCCcccccccCChhh
Q 009356 432 PECDWSEHTCPDGNKYYYNCETCESRWDKPEEY 464 (537)
Q Consensus 432 ~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~ 464 (537)
..+.|.|++++||+.||||..|++|+||||++|
T Consensus 8 ~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 8 TEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 346799999999999999999999999999875
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.3e-11 Score=124.89 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=69.2
Q ss_pred CCCCCCccccc--CCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc--
Q 009356 177 VAPPDKLYVGC--LSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ-- 252 (537)
Q Consensus 177 ~~~~~~l~V~n--l~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~-- 252 (537)
..+.++|||+| |+..+|+++|+++|++||.|..|.+.. +||||||+|.+.++|.+||+.|||..++...|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45678999999 578999999999999999999987764 689999999999999999999999998654455
Q ss_pred eEEEEEcc
Q 009356 253 PLVVRIAD 260 (537)
Q Consensus 253 ~l~V~~a~ 260 (537)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888885
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.2e-11 Score=99.48 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=66.9
Q ss_pred ceeEEEeeccCCCCCCCCCCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHH
Q 009356 161 QASIKVRFADGEREHPVAPPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISG 240 (537)
Q Consensus 161 ~~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~ 240 (537)
...|+|.|...... ..+..+++++|+++|++||.|..|.|+. +++|||||+|.+.++|.+|++.
T Consensus 10 ~~~~~v~w~~~~~~------------~~~~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 10 TPKLKLKWKCKKED------------ESKGGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp SCEEEEECCCCSSC------------SCCCSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHT
T ss_pred cceEEEeeeccCcc------------CcCCCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHh
Confidence 46788888543211 1246799999999999999999999983 5899999999999999999998
Q ss_pred cCCceEecCCCceEEEEEccCCCC
Q 009356 241 LNGTFTMRGSDQPLVVRIADPKKP 264 (537)
Q Consensus 241 lng~~~~~g~g~~l~V~~a~~~~~ 264 (537)
+++ + .+++|+|.|+..+..
T Consensus 74 ~~~--~---~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 74 EVG--L---VDNPLKISWLEGQPQ 92 (100)
T ss_dssp CCB--C---SSSBCEEECSSCCCC
T ss_pred cCC--C---CCCeEEEEEccCCCC
Confidence 665 2 579999999987653
No 373
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=99.18 E-value=5.6e-12 Score=89.49 Aligned_cols=37 Identities=30% Similarity=0.617 Sum_probs=33.3
Q ss_pred CCCCCceeeCCCCCeeeeeCCcccccccCChhhHHHH
Q 009356 432 PECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFE 468 (537)
Q Consensus 432 ~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~~~ 468 (537)
+.+.|.|++++||+.||||..|++|+||||++|+...
T Consensus 5 ~~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~ 41 (50)
T 2dk1_A 5 SSGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDL 41 (50)
T ss_dssp CSCCEEECCCSTTCCCEEESSSCCEESSCCTTCCCCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEeeCChhhhhhH
Confidence 4568999999999999999999999999999986553
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=9.1e-11 Score=99.91 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCC--CC--------CHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009356 87 GIPAKLYVAPVPR--TA--------TEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 87 ~~~~~LfVgnLp~--~~--------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
.+++.|.|.|+=. +. -++||++.|++||.|.+|.|.++. .+|||||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567899999832 21 135889999999999999997763 489999999999999999999999987
Q ss_pred ecCCceeEEEeecc
Q 009356 157 FPGEQASIKVRFAD 170 (537)
Q Consensus 157 ~~g~~~~l~v~~a~ 170 (537)
.++.|++.++.
T Consensus 81 ---~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 ---AGKMITAAYVP 91 (114)
T ss_dssp ---TTEECEEEEEC
T ss_pred ---CCEEEEEEEEc
Confidence 67999999875
No 375
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.3e-12 Score=94.43 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=33.1
Q ss_pred CCCceeeCCCCCeeeeeCCcccccccCChhhHHHH
Q 009356 434 CDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFE 468 (537)
Q Consensus 434 ~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~~~ 468 (537)
+.|.++++.|||+||||..|++|.||||+||+...
T Consensus 20 t~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~~ 54 (73)
T 2dk7_A 20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRA 54 (73)
T ss_dssp SSCEEEEESSSCEEEEETTTTEECSSCCTTTTTCS
T ss_pred CCcEEEECCCCCEEEecCcccceeccCChHhcCHH
Confidence 57999999999999999999999999999999764
No 376
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.11 E-value=1.2e-10 Score=99.14 Aligned_cols=77 Identities=14% Similarity=0.280 Sum_probs=64.4
Q ss_pred CCCCcccccCCcC----------CCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEec
Q 009356 179 PPDKLYVGCLSKQ----------TSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMR 248 (537)
Q Consensus 179 ~~~~l~V~nl~~~----------~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~ 248 (537)
++++|.|.|+-.. -.++||++.|++||.|.+|.|.++. .+|++||+|.+.++|.+|++.|||+.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f-- 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWF-- 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEE--
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEE--
Confidence 4456667766432 1246899999999999999997653 589999999999999999999999998
Q ss_pred CCCceEEEEEccC
Q 009356 249 GSDQPLVVRIADP 261 (537)
Q Consensus 249 g~g~~l~V~~a~~ 261 (537)
+||.|+|.|+..
T Consensus 81 -~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 -AGKMITAAYVPL 92 (114)
T ss_dssp -TTEECEEEEECH
T ss_pred -CCEEEEEEEEcH
Confidence 899999999864
No 377
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=99.09 E-value=2.3e-11 Score=83.05 Aligned_cols=31 Identities=52% Similarity=1.180 Sum_probs=27.2
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
.+.|.|++++||+.||||..|++|+||||++
T Consensus 11 ~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 11 KSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp -CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 4679999999999999999999999999975
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2.1e-09 Score=91.73 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=62.6
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEcc-HHHHHHHHHHhc-CceeecCCcee
Q 009356 87 GIPAKLYVAPVPRT-ATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTI-FEEAGNAIRALN-GHYIFPGEQAS 163 (537)
Q Consensus 87 ~~~~~LfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~-~e~A~~Ai~~l~-g~~~~~g~~~~ 163 (537)
..++.|||+||+.+ +++++|+++|+.||.|..|.+.++.. .|||.|.+ .++|..|++.|+ |...+. +..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~--g~~ 87 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR--NKE 87 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT--SSS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe--CcE
Confidence 45689999999999 99999999999999999999999874 69999999 899999999995 222233 355
Q ss_pred EEEeecc
Q 009356 164 IKVRFAD 170 (537)
Q Consensus 164 l~v~~a~ 170 (537)
+++....
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 5555543
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=8.2e-09 Score=82.67 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=61.8
Q ss_pred CCCCEEEEcCCC----CCCCH----HHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeec
Q 009356 87 GIPAKLYVAPVP----RTATE----EDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFP 158 (537)
Q Consensus 87 ~~~~~LfVgnLp----~~~te----~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~ 158 (537)
.+..||+|.-++ .+.-. .+|.+.|..||.|..++++.|+ +||+|.+.++|.+||+ |+|..+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v-- 73 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL-- 73 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE--
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe--
Confidence 345788888776 23323 5788999999999999999984 8999999999999996 999988
Q ss_pred CCceeEEEeeccCC
Q 009356 159 GEQASIKVRFADGE 172 (537)
Q Consensus 159 g~~~~l~v~~a~~~ 172 (537)
.+|.|+|..+..+
T Consensus 74 -~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 -LNRTITIALKSPS 86 (91)
T ss_dssp -TTEEEEEEECCCS
T ss_pred -CCeEEEEEeCCCC
Confidence 7799999988754
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=1.1e-08 Score=81.90 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=60.6
Q ss_pred CCCCCcccccCC----cCCCH----HHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecC
Q 009356 178 APPDKLYVGCLS----KQTSK----KEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRG 249 (537)
Q Consensus 178 ~~~~~l~V~nl~----~~~te----~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g 249 (537)
++..+|+|.-.+ .++.. .+|.+.|+.||.|..++|+.|. +||+|.+.++|.+||+ |||..+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v--- 73 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKEL--- 73 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEE---
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEe---
Confidence 344566665554 23333 6789999999999999999862 8999999999999998 999998
Q ss_pred CCceEEEEEccCC
Q 009356 250 SDQPLVVRIADPK 262 (537)
Q Consensus 250 ~g~~l~V~~a~~~ 262 (537)
+||.|+|.++.+.
T Consensus 74 ~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 LNRTITIALKSPS 86 (91)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEeCCCC
Confidence 8999999999864
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.3e-08 Score=86.90 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=65.0
Q ss_pred CCCCCCcccccCCcC-CCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcC-HHHHHHHHHHcC--CceEecCCCc
Q 009356 177 VAPPDKLYVGCLSKQ-TSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSH-REMALAAISGLN--GTFTMRGSDQ 252 (537)
Q Consensus 177 ~~~~~~l~V~nl~~~-~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~-~~~A~~Ai~~ln--g~~~~~g~g~ 252 (537)
....+.|||+||+++ +++++|+++|+.||.|.+|.+.++. ..|||+|.+ .++|..|++.|| +..+ ++.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i---~g~ 86 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQL---RNK 86 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCT---TSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEE---eCc
Confidence 456789999999999 9999999999999999999999863 369999999 899999999996 4444 678
Q ss_pred eEEEEEcc
Q 009356 253 PLVVRIAD 260 (537)
Q Consensus 253 ~l~V~~a~ 260 (537)
.+.+....
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88877643
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.75 E-value=5.3e-08 Score=92.87 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHcCCCCeeEEEEEeec-----CCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceEEEEEccC
Q 009356 191 QTSKKEIEEVFSPYGHIEDIFIVRDE-----LKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPLVVRIADP 261 (537)
Q Consensus 191 ~~te~~L~~~F~~~G~I~~v~i~~d~-----~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l~V~~a~~ 261 (537)
+-.+++|++.|++||.|..+.|+++. ++.++|++||+|.+.++|.+|++.|||+.+ +||.|.|.|...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~---~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---AGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE---CCeEEEEEEcCH
Confidence 34678999999999999999998773 237899999999999999999999999998 899999999864
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=2.5e-08 Score=95.18 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=64.3
Q ss_pred CCEEEEcCCC-----CCCCHHHHHHHhhccCCeEEEEeccCC----CCCCccceEEEEEccHHHHHHHHHHhcCceeecC
Q 009356 89 PAKLYVAPVP-----RTATEEDIRPLFEEHGNVIEVVLPKDK----RTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPG 159 (537)
Q Consensus 89 ~~~LfVgnLp-----~~~te~~L~~~F~~~G~I~~v~i~~d~----~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g 159 (537)
...+.+.|+- .+-.+++|++.|++||.|.+++|+++. .+++++|++||+|.+.++|.+|++.|||..+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--- 200 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--- 200 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS---
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE---
Confidence 3455555542 223467899999999999999998554 4569999999999999999999999999987
Q ss_pred CceeEEEeecc
Q 009356 160 EQASIKVRFAD 170 (537)
Q Consensus 160 ~~~~l~v~~a~ 170 (537)
.+|.|.+.+..
T Consensus 201 ~gr~i~~~~~~ 211 (222)
T 3dxb_A 201 AGRKVVAEVYD 211 (222)
T ss_dssp SSSBCEEEECC
T ss_pred CCeEEEEEEcC
Confidence 67899998875
No 384
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=82.00 Aligned_cols=37 Identities=43% Similarity=0.927 Sum_probs=33.4
Q ss_pred CCCCCceeeCCCCCeeeeeCCcccccccCChhhHHHH
Q 009356 432 PECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFE 468 (537)
Q Consensus 432 ~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~~~ 468 (537)
....|.|+++++||.||||..|++|+||+|.++....
T Consensus 12 lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~ 48 (92)
T 2l5f_A 12 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPA 48 (92)
T ss_dssp TTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHH
T ss_pred CCCCcEEEEcCCCCEEEEECCCCceecccCccccccc
Confidence 3466999999999999999999999999999998754
No 385
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.63 E-value=7.4e-09 Score=80.98 Aligned_cols=35 Identities=31% Similarity=0.731 Sum_probs=31.8
Q ss_pred CCCCCceeeCCCCCeeeeeCCcccccccCChhhHH
Q 009356 432 PECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLL 466 (537)
Q Consensus 432 ~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~ 466 (537)
+...|.|+++++||.||||..|++|+||+|.+|+.
T Consensus 3 ~~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~ 37 (75)
T 2jxw_A 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQG 37 (75)
T ss_dssp CCCCEEEEEETTTEEEEEETTTTEEECSCCSSCSS
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEeecCCCcccc
Confidence 45679999999999999999999999999998754
No 386
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.7e-08 Score=79.25 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCCCCEEEEcCCCCC------CCH---HHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCcee
Q 009356 86 SGIPAKLYVAPVPRT------ATE---EDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYI 156 (537)
Q Consensus 86 ~~~~~~LfVgnLp~~------~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~ 156 (537)
..+..||+|.-++.+ .++ .+|.+.|..||.|..++++.|+ +||+|.+.++|.+||+ |+|..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345679999988643 232 4688999999999999999984 9999999999999997 999998
Q ss_pred ecCCceeEEEeecc
Q 009356 157 FPGEQASIKVRFAD 170 (537)
Q Consensus 157 ~~g~~~~l~v~~a~ 170 (537)
.+|.|+|++..
T Consensus 83 ---~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 ---KGRAVKISGPS 93 (95)
T ss_dssp ---TTEEEEEECCC
T ss_pred ---CCeEEEEeccC
Confidence 78999998743
No 387
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.58 E-value=1.6e-08 Score=61.93 Aligned_cols=26 Identities=27% Similarity=0.518 Sum_probs=23.9
Q ss_pred CCceeeCCCCCeeeeeCCcccccccCC
Q 009356 435 DWSEHTCPDGNKYYYNCETCESRWDKP 461 (537)
Q Consensus 435 ~w~~~~~~~g~~y~~~~~~~~~~w~~p 461 (537)
.|. .....||.||||..|++|+||+|
T Consensus 2 gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCe-EECCCCCeEEEECCCCCEeccCC
Confidence 488 77889999999999999999998
No 388
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.54 E-value=4e-08 Score=65.64 Aligned_cols=31 Identities=35% Similarity=0.752 Sum_probs=28.4
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.++.+++||.||||..|++|+||+|..
T Consensus 5 P~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 5 PPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 3569999999999999999999999999964
No 389
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=5e-08 Score=78.48 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCCCCCcccccCCc-----CCCH----HHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEe
Q 009356 177 VAPPDKLYVGCLSK-----QTSK----KEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTM 247 (537)
Q Consensus 177 ~~~~~~l~V~nl~~-----~~te----~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~ 247 (537)
.++..+|+|.-++. .+.. .+|.+.|+.||.|..++|+.|. +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v- 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKV- 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEE-
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeee-
Confidence 45667888877763 2333 5688999999999999999863 9999999999999998 999999
Q ss_pred cCCCceEEEEEccC
Q 009356 248 RGSDQPLVVRIADP 261 (537)
Q Consensus 248 ~g~g~~l~V~~a~~ 261 (537)
+||.|+|.+..+
T Consensus 83 --~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 --KGRAVKISGPSS 94 (95)
T ss_dssp --TTEEEEEECCCC
T ss_pred --CCeEEEEeccCC
Confidence 899999988653
No 390
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.52 E-value=5.8e-08 Score=65.98 Aligned_cols=30 Identities=33% Similarity=0.850 Sum_probs=27.9
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.++.+++||.||||..|++|+||+|.
T Consensus 9 P~gW~~~~d~~Gr~YY~n~~T~~t~We~P~ 38 (40)
T 2ysh_A 9 PPGWQSYLSPQGRRYYVNTTTNETTWERPS 38 (40)
T ss_dssp CTTCEEEECTTSCEEEECSSSCCEESSSCC
T ss_pred CCCceEEECCCCCEEEEECCCCCEeCCCCC
Confidence 356999999999999999999999999996
No 391
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.51 E-value=2.7e-08 Score=80.93 Aligned_cols=37 Identities=46% Similarity=0.916 Sum_probs=33.8
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChhhHHHHH
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLFEQ 469 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~~~~ 469 (537)
.+.|.++.+++||.||||..|++|+|++|++|+++++
T Consensus 54 ~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~~~~ 90 (92)
T 2l5f_A 54 KCPWKEYKSDSGKTYYYNSQTKESRWAKPKELEDLEG 90 (92)
T ss_dssp SCSEEEEECTTCCEEEEETTTTEEESCCCHHHHTSSS
T ss_pred ccceEEEECCCCCEEEEECCCCCeeccCchhHhhhhc
Confidence 4679999999999999999999999999999987653
No 392
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.48 E-value=5.6e-08 Score=75.96 Aligned_cols=33 Identities=48% Similarity=0.944 Sum_probs=30.1
Q ss_pred CCCCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 431 SPECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 431 ~~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
.....|.++.+++||.||||..|++|+|++|++
T Consensus 43 ~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 43 AVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp SCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 445779999999999999999999999999975
No 393
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.47 E-value=4.1e-08 Score=67.88 Aligned_cols=32 Identities=31% Similarity=0.761 Sum_probs=29.4
Q ss_pred CCCceeeCCCCCeeeeeCCcccccccCChhhH
Q 009356 434 CDWSEHTCPDGNKYYYNCETCESRWDKPEEYL 465 (537)
Q Consensus 434 ~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~ 465 (537)
..|.++.+++||.||||..|++|+|++|..+.
T Consensus 11 ~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~~ 42 (43)
T 1ymz_A 11 PGWERRTDVEGKVYYFNVRTLTTTWERPTIIL 42 (43)
T ss_dssp SSEEEEECTTSCEEEEETTTTEEESSCCCSCC
T ss_pred CCCEEEECCCCCEEEEECCCCCCcccCCcccc
Confidence 46999999999999999999999999998754
No 394
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.39 E-value=1.9e-07 Score=73.01 Aligned_cols=34 Identities=38% Similarity=0.719 Sum_probs=31.4
Q ss_pred CCCceeeCCCCCeeeeeCCcccccccCChhhHHH
Q 009356 434 CDWSEHTCPDGNKYYYNCETCESRWDKPEEYLLF 467 (537)
Q Consensus 434 ~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~~ 467 (537)
+.|.++.+++||.||||..|++|+|++|.++...
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~ 35 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQ 35 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHH
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhccc
Confidence 4699999999999999999999999999988764
No 395
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.37 E-value=2.3e-07 Score=63.30 Aligned_cols=30 Identities=20% Similarity=0.701 Sum_probs=28.0
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++||.||||..|++|+||+|.
T Consensus 10 P~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 10 PPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 456999999999999999999999999996
No 396
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.36 E-value=2.2e-07 Score=61.57 Aligned_cols=30 Identities=27% Similarity=0.650 Sum_probs=27.7
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++||.||||..|++|+||+|.
T Consensus 6 P~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 6 PPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 356999999999999999999999999995
No 397
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.34 E-value=1.3e-07 Score=67.87 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=27.2
Q ss_pred CCCceeeCC-CCCeeeeeCCcccccccCChh
Q 009356 434 CDWSEHTCP-DGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 434 ~~w~~~~~~-~g~~y~~~~~~~~~~w~~p~~ 463 (537)
..|.++.+. +||.||||..|++|+||+|.+
T Consensus 13 ~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~ 43 (52)
T 2jx8_A 13 AGWEKCWSRRENRPYYFNRFTNQSLWEMPVL 43 (52)
T ss_dssp HTCCEEEETTTTEEEEEETTTTEEESSCCCC
T ss_pred cCcEEEEccccCCEEEEECCCCCEEeCCCCC
Confidence 569999974 799999999999999999975
No 398
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.33 E-value=3.8e-07 Score=65.92 Aligned_cols=32 Identities=31% Similarity=0.691 Sum_probs=28.6
Q ss_pred CCCCceeeCC-CCCeeeeeCCcccccccCChhh
Q 009356 433 ECDWSEHTCP-DGNKYYYNCETCESRWDKPEEY 464 (537)
Q Consensus 433 ~~~w~~~~~~-~g~~y~~~~~~~~~~w~~p~~~ 464 (537)
...|.+..+. +||.||||..|++|+||+|.+.
T Consensus 9 P~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 9 PAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 3569999876 8999999999999999999875
No 399
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.28 E-value=4.2e-07 Score=60.21 Aligned_cols=30 Identities=27% Similarity=0.691 Sum_probs=27.7
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++||.||||..|++|+|++|.
T Consensus 6 P~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 6 PSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp CTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 356999999999999999999999999995
No 400
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.27 E-value=5.6e-07 Score=60.65 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=27.8
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++|+.||||..|++|+|++|.
T Consensus 8 P~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 8 PPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 356999999999999999999999999995
No 401
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.22 E-value=5.6e-07 Score=63.86 Aligned_cols=31 Identities=19% Similarity=0.656 Sum_probs=28.7
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++|+.||||..|++|+||+|..
T Consensus 14 P~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 14 PKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp CTTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 4579999999999999999999999999965
No 402
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.21 E-value=6.4e-07 Score=59.96 Aligned_cols=30 Identities=27% Similarity=0.630 Sum_probs=27.8
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++|+.||||..|++|+|+.|.
T Consensus 8 P~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 8 PDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp SSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 456999999999999999999999999995
No 403
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=8.3e-07 Score=61.15 Aligned_cols=31 Identities=23% Similarity=0.606 Sum_probs=28.3
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++||.||||..|++|+||+|..
T Consensus 9 P~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 9 PPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp CTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 3569999999999999999999999999964
No 404
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.14 E-value=1.6e-06 Score=58.73 Aligned_cols=30 Identities=33% Similarity=0.631 Sum_probs=27.8
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++||.||||..|++|+|+.|.
T Consensus 9 P~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 9 PYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp CTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 456999999999999999999999999995
No 405
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.12 E-value=1.9e-06 Score=60.13 Aligned_cols=31 Identities=19% Similarity=0.648 Sum_probs=28.5
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++||.||||..|+.|+|+.|..
T Consensus 12 P~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 12 PPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 4569999999999999999999999999964
No 406
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.7e-05 Score=65.06 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=66.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEH-----GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
..++|-+-|||..+++..|+.+++++ |.|+.|.+..|- |=|+|+|.|...|-+|.-.|+|..| .++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef---~gr 90 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQF---QGK 90 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEE---TTE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeee---cCe
Confidence 35899999999999999999999999 999999999986 5799999999999999999999998 678
Q ss_pred eEEEeec
Q 009356 163 SIKVRFA 169 (537)
Q Consensus 163 ~l~v~~a 169 (537)
+|++...
T Consensus 91 ~Lr~gTv 97 (117)
T 2l9w_A 91 VIRSGTI 97 (117)
T ss_dssp EEEEECH
T ss_pred EEEecCH
Confidence 8887643
No 407
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.08 E-value=2.2e-06 Score=58.55 Aligned_cols=31 Identities=13% Similarity=0.414 Sum_probs=28.3
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++||.||||..|+.|+|+.|..
T Consensus 9 P~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 9 PPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 4569999999999999999999999999963
No 408
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=1e-05 Score=66.35 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=65.1
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCC-----CCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCceE
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPY-----GHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQPL 254 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~-----G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~l 254 (537)
.++|-|-+||+.+++..|+.++.++ |.|+.|.+..| .+-|+|+|.|...|.+|.-.|+|..| +||+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef---~gr~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQF---QGKVI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEE---TTEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeee---cCeEE
Confidence 5678888999999999999999999 99999999985 45699999999999999999999998 89999
Q ss_pred EEEE
Q 009356 255 VVRI 258 (537)
Q Consensus 255 ~V~~ 258 (537)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 409
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.06 E-value=2.8e-06 Score=57.45 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=27.8
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++|+.||||..|+.|+|+.|.
T Consensus 9 P~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 9 PEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CSSEEEEECTTCCEEEEETTTCCEESSCTT
T ss_pred CcCcEEEEcCCCCEEEEECCCCcEecCCCC
Confidence 456999999999999999999999999995
No 410
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.03 E-value=5e-06 Score=57.99 Aligned_cols=30 Identities=27% Similarity=0.697 Sum_probs=27.9
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++|+.||||..|+.|+||.|.
T Consensus 13 P~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr 42 (46)
T 2l4j_A 13 PEGWEQAITPEGEIYYINHKNKTTSWLDPR 42 (46)
T ss_dssp CTTCEEEECTTSCEEEEETTTTEEECSCCS
T ss_pred CcCceeEECCCCCEEEEECCCCCEeCCCCC
Confidence 456999999999999999999999999995
No 411
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=97.99 E-value=4.6e-06 Score=59.26 Aligned_cols=31 Identities=26% Similarity=0.682 Sum_probs=28.4
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++||.||||..|+.|+||+|..
T Consensus 13 P~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 13 PPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp STTEEEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CcCcEEEEcCCCCEEEEECCCCCEEeeCCCC
Confidence 4569999999999999999999999999964
No 412
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.98 E-value=3.7e-06 Score=56.30 Aligned_cols=29 Identities=21% Similarity=0.702 Sum_probs=26.0
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++| .||||..|++|+||+|.
T Consensus 10 P~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 10 PPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 456999999999 59999999999999984
No 413
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=97.95 E-value=4e-06 Score=59.24 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=28.5
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++||.||||.+|+.|+|+.|..
T Consensus 13 P~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 13 PPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CTTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 3569999999999999999999999999975
No 414
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=97.88 E-value=4.7e-06 Score=64.97 Aligned_cols=30 Identities=37% Similarity=0.746 Sum_probs=28.1
Q ss_pred CCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 434 CDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 434 ~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
..|.+..+++||.||||..|++|+|++|+.
T Consensus 43 ~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 43 NGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp HTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 469999999999999999999999999964
No 415
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=97.82 E-value=1e-05 Score=53.80 Aligned_cols=29 Identities=24% Similarity=0.704 Sum_probs=26.5
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+.+| .||||..|++|+||.|.
T Consensus 5 P~GWe~~~d~~g-~YY~n~~t~~tqWe~P~ 33 (38)
T 2ho2_A 5 PAGWMRVQDTSG-TYYWHIPTGTTQWEPPG 33 (38)
T ss_dssp CTTEEEEECSSC-EEEEETTTTEEESSCCC
T ss_pred CCCceEEEeCCC-CEEEecCCCCEeccCCC
Confidence 345999999999 99999999999999995
No 416
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=97.82 E-value=1.3e-05 Score=56.46 Aligned_cols=30 Identities=17% Similarity=0.443 Sum_probs=27.8
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++||.||||..|+.|+||+|.
T Consensus 15 P~GWe~~~d~~Gr~YYvnh~t~~T~We~P~ 44 (49)
T 2zaj_A 15 PAGWEKIEDPVYGIYYVDHINRKTQYENPS 44 (49)
T ss_dssp CTTEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred CcCceEEEcCCCCEEEEeCCCCCEecCCCC
Confidence 456999999999999999999999999995
No 417
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=0.00043 Score=56.30 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCc
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEH-----GNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQ 161 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~ 161 (537)
....+|.|.|||.+++++.|.-+|+.- |+|.++.... +-|+|+|.+.+.|++.|+.- ...| .+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~-~H~L---~~ 73 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQA-DHEL---HG 73 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCS-CCBS---SS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCC-ccee---cC
Confidence 346899999999999999999999972 6898888755 36999999999999998441 2223 34
Q ss_pred eeEEEeeccCCCCCCCCCCCCcccccCCcCCC
Q 009356 162 ASIKVRFADGEREHPVAPPDKLYVGCLSKQTS 193 (537)
Q Consensus 162 ~~l~v~~a~~~~~~~~~~~~~l~V~nl~~~~t 193 (537)
..|.|.-.. .....+|++.+|++.++
T Consensus 74 ~~LsV~P~~------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 74 AQLSLRPAP------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp SBCEEEECC------CCCCCCCCCCSCCCCCC
T ss_pred eEEEEEcCC------CCCcceEeeecCCCCCC
Confidence 566665432 23456899999998764
No 418
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.74 E-value=1.3e-05 Score=64.75 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.9
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChhhH
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEEYL 465 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~ 465 (537)
...|.++.+++||.||||..|++|+|++|....
T Consensus 11 P~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~ 43 (90)
T 2kxq_A 11 PEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPR 43 (90)
T ss_dssp CSSCEEEEETTTEEEEEETTTTEEESSCSSSCS
T ss_pred CCCcEEEECCCCCEEEEECCCCeEeeecccccc
Confidence 456999999999999999999999999998653
No 419
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.68 E-value=3.7e-05 Score=56.04 Aligned_cols=31 Identities=19% Similarity=0.496 Sum_probs=28.6
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++||.||||..|+.|+|+.|..
T Consensus 16 P~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~ 46 (57)
T 2ysd_A 16 PENWEMAYTENGEVYFIDHNTKTTSWLDPRC 46 (57)
T ss_dssp CSSEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CcCcEEEECCCCCEEEEECCCCcEecCCCCC
Confidence 4679999999999999999999999999964
No 420
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.63 E-value=0.00037 Score=55.96 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=59.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCC--ccceEEEEEccHHHHHHHHHHhcCceeecCCce
Q 009356 90 AKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQ--QQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQA 162 (537)
Q Consensus 90 ~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~--~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~ 162 (537)
.+|.|++||+++||+++.+.+..+..+.-...+..+.+.+ .-+-|||.|.+.+++....+.++|..+.+.++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~ 76 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQ 76 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCC
Confidence 5799999999999999999999998876666554443322 224599999999999999999999998876554
No 421
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.61 E-value=3.3e-05 Score=55.45 Aligned_cols=31 Identities=13% Similarity=0.472 Sum_probs=28.3
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++||.||||-.|+.|+|+.|..
T Consensus 20 P~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 20 PPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp CTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred CcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 4569999999999999999999999999964
No 422
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.61 E-value=3.5e-05 Score=61.92 Aligned_cols=32 Identities=19% Similarity=0.563 Sum_probs=29.5
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChhh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEEY 464 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~ 464 (537)
...|.+..+++||.||||..|++|+|++|...
T Consensus 14 P~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~ 45 (88)
T 1tk7_A 14 PDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQ 45 (88)
T ss_dssp SSSCCEEEETTTEEEEEETTTTEEEEESCCCT
T ss_pred CCCcEEEECCCCCEEEEECCCCCeEeeccccc
Confidence 45699999999999999999999999999864
No 423
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=5e-05 Score=55.78 Aligned_cols=31 Identities=16% Similarity=0.377 Sum_probs=28.3
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++||.||||..|+.++||.|..
T Consensus 15 P~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~ 45 (60)
T 2yse_A 15 PAGWEKIEDPVYGIYYVDHINRKTQYENPVL 45 (60)
T ss_dssp CSSEEEEECSSSCEEEEETTTTEEESSCHHH
T ss_pred CCCcEEEECCCCCEEEEeCCCCCeeccCCCc
Confidence 3569999999999999999999999999964
No 424
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.52 E-value=3.1e-05 Score=54.66 Aligned_cols=31 Identities=13% Similarity=0.379 Sum_probs=28.0
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++|+.||+|-.|+.|+||.|..
T Consensus 15 P~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 15 PPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 3469999999999999999999999999953
No 425
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.50 E-value=3.2e-05 Score=54.78 Aligned_cols=29 Identities=24% Similarity=0.704 Sum_probs=26.9
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.|+..+.| .||||..|+.++||.|.
T Consensus 21 PpGW~~~~D~sG-tYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 21 PAGWMRVQDTSG-TYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp CTTEEEEEETTE-EEEEETTTCCEESSCCC
T ss_pred CCCCeEeecCCC-CEEEEcCCCCCccCCCC
Confidence 456999999999 99999999999999995
No 426
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.42 E-value=7.6e-05 Score=60.15 Aligned_cols=32 Identities=13% Similarity=0.377 Sum_probs=29.0
Q ss_pred CCCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 432 PECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 432 ~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
....|.+..+++||.||||..|++|+|+.|..
T Consensus 56 LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 56 LPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred cCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 34679999999999999999999999999963
No 427
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.39 E-value=6.9e-05 Score=60.16 Aligned_cols=30 Identities=13% Similarity=0.493 Sum_probs=27.8
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++|+.||||..|++|+|++|.
T Consensus 58 P~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 58 PPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp CSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred CCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 457999999999999999999999999994
No 428
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.38 E-value=0.00011 Score=51.21 Aligned_cols=31 Identities=19% Similarity=0.607 Sum_probs=28.3
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++||.||+|-+|+.|+|+.|..
T Consensus 10 P~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 10 PAGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CTTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred CcCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 4569999999999999999999999999964
No 429
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.30 E-value=0.00014 Score=52.35 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=28.3
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++|+.||+|-.|+.|+|+.|..
T Consensus 13 P~GWe~~~~~~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 13 PYGWEQETDENGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp CTTEEEEECTTSCEEEEESSSCCEESSCTTS
T ss_pred CcCcEEEECCCCCEEEEeCCCCCEeecCCCC
Confidence 4569999999999999999999999999964
No 430
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.00045 Score=56.47 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCCCcccccCCcCC-C----HHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce
Q 009356 179 PPDKLYVGCLSKQT-S----KKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253 (537)
Q Consensus 179 ~~~~l~V~nl~~~~-t----e~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~ 253 (537)
..++|+|.||+.++ . .+.++++|..|+++.....++. =.-..|.|.+.++|.+|...|++..+ .|+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f---~g~~ 75 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEF---LGKE 75 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEE---TTEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhcccee---cCce
Confidence 35689999998765 2 2678999999999998888874 33568999999999999999999998 7899
Q ss_pred EEEEEccC
Q 009356 254 LVVRIADP 261 (537)
Q Consensus 254 l~V~~a~~ 261 (537)
++|-|+.+
T Consensus 76 ~r~YFgq~ 83 (104)
T 1wey_A 76 MKLYFAQT 83 (104)
T ss_dssp CEEECCCC
T ss_pred eEEEecCC
Confidence 99999984
No 431
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.0013 Score=53.74 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=61.9
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 89 PAKLYVAPVPRTA-T----EEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 89 ~~~LfVgnLp~~~-t----e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
.++|+|.||+.++ . .+.++++|..|+++......+.-+ =..|.|.+.++|.+|...|++..+ .+..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f---~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEF---LGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEE---TTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhcccee---cCce
Confidence 4789999998766 2 257789999999998887776632 478999999999999999999988 6678
Q ss_pred EEEeeccC
Q 009356 164 IKVRFADG 171 (537)
Q Consensus 164 l~v~~a~~ 171 (537)
+++.++..
T Consensus 76 ~r~YFgq~ 83 (104)
T 1wey_A 76 MKLYFAQT 83 (104)
T ss_dssp CEEECCCC
T ss_pred eEEEecCC
Confidence 99999863
No 432
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.02 E-value=0.0055 Score=49.07 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=62.8
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecC---CCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc--eEE
Q 009356 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDEL---KQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ--PLV 255 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~---g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~--~l~ 255 (537)
++|.|++||+.+|++++.+.++....+.....+..+. ...-.-|+|.|.+.+++..-.+.++|..+.+..|. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4688999999999999999999998877766665421 12336699999999999999999999999765443 334
Q ss_pred EEEcc
Q 009356 256 VRIAD 260 (537)
Q Consensus 256 V~~a~ 260 (537)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66654
No 433
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.96 E-value=0.0028 Score=50.86 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=47.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
...++| ++|+++...||.++|+.||.| .|+.+.|- -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 355666 999999999999999999955 47777774 89999999999999998774
No 434
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.79 E-value=0.0019 Score=52.09 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=45.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhc
Q 009356 91 KLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALN 152 (537)
Q Consensus 91 ~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~ 152 (537)
.++| ++|+++...||.++|+.||. ..|+.+.|- -|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3455 99999999999999999994 457778874 89999999999999998774
No 435
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.70 E-value=0.0035 Score=50.61 Aligned_cols=76 Identities=7% Similarity=0.020 Sum_probs=54.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCC-CCc-cceEEEEEccHHHHHHHHHHhcCceeecCCcee
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRT-GQQ-QGYCFVKFTIFEEAGNAIRALNGHYIFPGEQAS 163 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~-kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~ 163 (537)
.+-+|.|+.||+.+||+++.+.+...-++.-...+..+.+ +.+ -.-|||.|.+.++.....+.++|..+.+.++..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 3568999999999999998887776544322222221111 111 145899999999999999999999988765543
No 436
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=96.48 E-value=0.0011 Score=59.63 Aligned_cols=32 Identities=28% Similarity=0.698 Sum_probs=26.7
Q ss_pred CCCCceeeC-CCCCeeeeeCCcccccccCChhh
Q 009356 433 ECDWSEHTC-PDGNKYYYNCETCESRWDKPEEY 464 (537)
Q Consensus 433 ~~~w~~~~~-~~g~~y~~~~~~~~~~w~~p~~~ 464 (537)
...|.+..+ ..|+.||||..|++|+||.|..-
T Consensus 11 P~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 11 PPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp CTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 456999999 59999999999999999999653
No 437
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.40 E-value=0.032 Score=45.32 Aligned_cols=76 Identities=14% Similarity=0.087 Sum_probs=57.7
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcC-----CCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCCCce
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSP-----YGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQP 253 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~-----~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~~ 253 (537)
..++|.|.|||..++++.|.-+|+. -|.|+.+.... +-|+|+|.+.+.|++.++.- ...+ .+..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~-~H~L---~~~~ 75 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQA-DHEL---HGAQ 75 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCS-CCBS---SSSB
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCC-ccee---cCeE
Confidence 4578999999999999999999976 25577776643 57899999999999998731 2233 5688
Q ss_pred EEEEEccCCCCC
Q 009356 254 LVVRIADPKKPR 265 (537)
Q Consensus 254 l~V~~a~~~~~~ 265 (537)
|.|.-.-++..+
T Consensus 76 LsV~P~~~~~~~ 87 (104)
T 2dhx_A 76 LSLRPAPPRAPA 87 (104)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEcCCCCCcc
Confidence 888776555443
No 438
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.18 E-value=0.012 Score=49.29 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=55.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeEEEe
Q 009356 88 IPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVR 167 (537)
Q Consensus 88 ~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~ 167 (537)
..+-|-|-+.|... ...|.+.|++||.|++...... ..+-.|.|.++.+|++|| ..||..+. .+..|-|.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL-~kNG~ii~--g~~mIGV~ 92 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKAL-SKDGRIFG--ESIMIGVK 92 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHH-TTTTCEET--TTEECEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHH-HhCCeEec--CCEEEEEE
Confidence 45788899999886 4567788999999998886322 359999999999999999 77888762 23455555
Q ss_pred ec
Q 009356 168 FA 169 (537)
Q Consensus 168 ~a 169 (537)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 439
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.76 E-value=0.018 Score=46.30 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=46.3
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcC
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLN 242 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~ln 242 (537)
...++| ++|.++.-.||.++|+.||. ..|+.+.| ..|||.|.+.+.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 456777 99999999999999999995 45666654 489999999999999998774
No 440
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.68 E-value=0.024 Score=45.68 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=58.4
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeec--CC-CcceEEEEEEcCHHHHHHHHHHcCCceEecCCCc--eE
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDE--LK-QSRGCAFVQFSHREMALAAISGLNGTFTMRGSDQ--PL 254 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~--~g-~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~g~--~l 254 (537)
.-+|.|++||+.+|++++.+.++..-++.....+..+ .+ ..-.-|+|.|.+.++...-.+.++|..+.+..|. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4578999999999999999998876554433332221 11 1224589999999999999999999999765443 44
Q ss_pred EEEEcc
Q 009356 255 VVRIAD 260 (537)
Q Consensus 255 ~V~~a~ 260 (537)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566654
No 441
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=95.35 E-value=0.008 Score=49.39 Aligned_cols=30 Identities=13% Similarity=0.412 Sum_probs=27.7
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCCh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPE 462 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~ 462 (537)
...|.+..+++|+.||.|-.|+.++|+.|.
T Consensus 74 P~GWE~r~d~~Gr~YfIdH~tktTtW~dPR 103 (109)
T 3l4h_A 74 PRGWEIKTDQQGKSFFVDHNSRATTFIDPR 103 (109)
T ss_dssp CTTEEEEECTTCCEEEEETTTTEEESSCSC
T ss_pred CCCCeEEECCCCCEEEEeCCCCCEeeCCCC
Confidence 355999999999999999999999999995
No 442
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.09 E-value=0.052 Score=45.46 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=54.6
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceEecCC-CceEEEEE
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFTMRGS-DQPLVVRI 258 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~~~g~-g~~l~V~~ 258 (537)
.+-|.|-+.+... ...|.+.|++||.|.+..... ...+..|.|.+..+|++|+. .||..+ + +-.|-|..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii---~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIF---GESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEE---TTTEECEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEe---cCCEEEEEEE
Confidence 3457777888774 677888999999999887621 45789999999999999998 588887 4 45566666
Q ss_pred cc
Q 009356 259 AD 260 (537)
Q Consensus 259 a~ 260 (537)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 443
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.85 E-value=0.013 Score=61.06 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=42.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHH
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIR 149 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 149 (537)
.|.|||. .|..+++.+|.++|++||.|.++.+.+++ | -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4899997 79999999999999999999998877654 2 599999999999997763
No 444
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.83 E-value=0.021 Score=46.02 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=45.5
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcC
Q 009356 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLN 242 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~ln 242 (537)
..++| ++|.++.-.||.++|+.||. ..|..+.| ..|||.|.+.+.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 35667 99999999999999999994 45666654 489999999999999999775
No 445
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.97 E-value=0.14 Score=43.50 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=49.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EeccCC--------CCC-----CccceEEEEEccHHHHHHHHHHhcCc
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEV-VLPKDK--------RTG-----QQQGYCFVKFTIFEEAGNAIRALNGH 154 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~--------~tg-----~~kG~aFV~F~~~e~A~~Ai~~l~g~ 154 (537)
...|.|-+.|.+.+. .+.+.|++||.|++- .+.++. ... ....+-.|+|.+..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 356777788877665 466789999998762 222100 001 13467899999999999999 78888
Q ss_pred eeecCCceeEEEee
Q 009356 155 YIFPGEQASIKVRF 168 (537)
Q Consensus 155 ~~~~g~~~~l~v~~ 168 (537)
.+ .+..|-|..
T Consensus 85 ii---~G~mIGV~P 95 (132)
T 3p3d_A 85 VF---NGVLLGVIP 95 (132)
T ss_dssp EE---TTEECEEEE
T ss_pred Ee---CcEEEEEEE
Confidence 76 334444444
No 446
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.64 E-value=0.037 Score=57.68 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=41.9
Q ss_pred CCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHH
Q 009356 180 PDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAIS 239 (537)
Q Consensus 180 ~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~ 239 (537)
.+.|+|. .+..+++.+|.++|++||.|.++.+.++ ..-||+|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----CCeEEEEEeCCHHHHHHHHh
Confidence 4678886 6888999999999999999999988875 34799999999999887765
No 447
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=91.47 E-value=0.1 Score=47.18 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=28.6
Q ss_pred CCCCceeeCC-CCCeeeeeCCcccccccCChhhHHH
Q 009356 433 ECDWSEHTCP-DGNKYYYNCETCESRWDKPEEYLLF 467 (537)
Q Consensus 433 ~~~w~~~~~~-~g~~y~~~~~~~~~~w~~p~~~~~~ 467 (537)
+..|..-.+. .|+.||||..|++++|++|....+-
T Consensus 9 p~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~vs~~ 44 (177)
T 1yw5_A 9 PPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTDKE 44 (177)
T ss_dssp CTTEEEEECSSTTCEEEEETTTCCEESSCCTTCCHH
T ss_pred CchHHHHhcccCCchhhhhHHHhhHhhcCcccCCHH
Confidence 3569977775 5999999999999999999775443
No 448
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=90.17 E-value=0.19 Score=48.37 Aligned_cols=34 Identities=32% Similarity=0.631 Sum_probs=29.9
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChhhHH
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEEYLL 466 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~~~~ 466 (537)
...|.+..+++|+.||-|-+|+.++|+-|.-...
T Consensus 13 ~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~~ 46 (261)
T 1eg3_A 13 QGPWERAISPNKVPYYINHETQTTCWDHPKMTEL 46 (261)
T ss_dssp CTTEEEEECTTSCEEEEETTTTEEESSCHHHHHH
T ss_pred CCCcceeECCCCCeEeecCCcccccCCCCchhhh
Confidence 3469999999999999999999999999985443
No 449
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.56 E-value=0.44 Score=40.46 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=50.9
Q ss_pred CcccccCCcCCCHHHHHHHHcCCCCeeEE-EEEeec----------C---C-CcceEEEEEEcCHHHHHHHHHHcCCceE
Q 009356 182 KLYVGCLSKQTSKKEIEEVFSPYGHIEDI-FIVRDE----------L---K-QSRGCAFVQFSHREMALAAISGLNGTFT 246 (537)
Q Consensus 182 ~l~V~nl~~~~te~~L~~~F~~~G~I~~v-~i~~d~----------~---g-~~rg~afV~F~~~~~A~~Ai~~lng~~~ 246 (537)
-|.|-+.|.+ ....|.+.|++||.|.+. .+.++. . . ...+...|+|.+..+|.+|+. -||..+
T Consensus 9 ~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF 86 (132)
T ss_dssp EEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE
T ss_pred EEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe
Confidence 3555577554 445677889999998762 221100 0 0 135678999999999999997 788887
Q ss_pred ecCCCceEEEEEcc
Q 009356 247 MRGSDQPLVVRIAD 260 (537)
Q Consensus 247 ~~g~g~~l~V~~a~ 260 (537)
+|..|-|...+
T Consensus 87 ---~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 ---NGVLLGVIPYT 97 (132)
T ss_dssp ---TTEECEEEECC
T ss_pred ---CcEEEEEEECC
Confidence 67788887764
No 450
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=88.44 E-value=0.13 Score=53.61 Aligned_cols=11 Identities=45% Similarity=0.371 Sum_probs=5.9
Q ss_pred CHHHHHHHhhc
Q 009356 102 TEEDIRPLFEE 112 (537)
Q Consensus 102 te~~L~~~F~~ 112 (537)
|.++|.++.++
T Consensus 128 Twdel~~~a~~ 138 (449)
T 3iot_A 128 TWEEIPALDKE 138 (449)
T ss_dssp BGGGHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44566655444
No 451
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.75 E-value=1.1 Score=47.30 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=47.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcC
Q 009356 89 PAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNG 153 (537)
Q Consensus 89 ~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g 153 (537)
...++|+ +|..+...+|.++|+.||.| +|+.+.|. .|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 3566666 99999999999999999954 57777764 799999999999999998853
No 452
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=86.64 E-value=0.3 Score=50.58 Aligned_cols=31 Identities=19% Similarity=0.519 Sum_probs=28.0
Q ss_pred CCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 433 ECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 433 ~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
...|.+..+++|++||.|-.|+.|+|+.|..
T Consensus 10 P~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 10 PSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp CTTCCCCCSSCCCCCEEETTTTEEESSCTTS
T ss_pred CCCceeEECCCCCeEEEeCCCcceeccCCCC
Confidence 3459999999999999999999999999964
No 453
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=84.50 E-value=0.26 Score=51.15 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=5.1
Q ss_pred CHHHHHHHHH
Q 009356 230 HREMALAAIS 239 (537)
Q Consensus 230 ~~~~A~~Ai~ 239 (537)
+.+.|.+-|+
T Consensus 272 ~~e~A~~fl~ 281 (449)
T 3iot_A 272 NKELAKEFLE 281 (449)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3455555553
No 454
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=59.42 E-value=10 Score=39.84 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=44.0
Q ss_pred CCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCC
Q 009356 181 DKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNG 243 (537)
Q Consensus 181 ~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng 243 (537)
..++|+ ++..+...+|.+.|+.||. .+|+.+. ...|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wid------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWID------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECS------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEc------CCeEEEEECCHHHHHHHHHHHHh
Confidence 345565 8888999999999999995 3555543 45799999999999999998854
No 455
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=54.20 E-value=8.4 Score=28.77 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=28.6
Q ss_pred CCCCCceeeCCCCCeeeeeCCcccccccCChh
Q 009356 432 PECDWSEHTCPDGNKYYYNCETCESRWDKPEE 463 (537)
Q Consensus 432 ~~~~w~~~~~~~g~~y~~~~~~~~~~w~~p~~ 463 (537)
-...|..-+-..|-.-||+..|+.-+|.||=-
T Consensus 29 LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~ 60 (79)
T 3le4_A 29 LPDGWIMTFHNSGVPVYLHRESRVVTWSRPYF 60 (79)
T ss_dssp CCTTEEEEECTTSSEEEEETTTTEEESSCCCC
T ss_pred CCCccEEEEecCCceEEEeccceEEeccCCeE
Confidence 34679999999999999999999999999943
No 456
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=38.03 E-value=1.4e+02 Score=23.13 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=26.2
Q ss_pred CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCc
Q 009356 115 NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGH 154 (537)
Q Consensus 115 ~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~ 154 (537)
.|.++.+... ..||-||++...++...+++...|.
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 3666666543 5799999999999888888666554
No 457
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=37.68 E-value=81 Score=23.20 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=40.2
Q ss_pred EEEEcCCC-CCCCHHHHHHHhhccC-----CeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHhcCceeecCCceeE
Q 009356 91 KLYVAPVP-RTATEEDIRPLFEEHG-----NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRALNGHYIFPGEQASI 164 (537)
Q Consensus 91 ~LfVgnLp-~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l 164 (537)
+|||..=- ..+...+|..++..-+ .|-.|.|..+ |.||+-.. +.|+.+++.|++..+ +++.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i---~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTV---KGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC------CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccC---cCceE
Confidence 45663222 3456667777776543 4566776544 89999866 457888889988776 56677
Q ss_pred EEeec
Q 009356 165 KVRFA 169 (537)
Q Consensus 165 ~v~~a 169 (537)
+++.+
T Consensus 70 ~v~~~ 74 (76)
T 2g0c_A 70 KVNKA 74 (76)
T ss_dssp CEEEC
T ss_pred EEEEC
Confidence 76654
No 458
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=31.64 E-value=2.2e+02 Score=23.51 Aligned_cols=111 Identities=8% Similarity=0.102 Sum_probs=59.8
Q ss_pred HHHHHHhhccC-CeEEEEeccCCCCCCccce-EEEEEccHHHHHHHHHHhcCceeecCCceeEEEeeccCCCCCCCCCCC
Q 009356 104 EDIRPLFEEHG-NVIEVVLPKDKRTGQQQGY-CFVKFTIFEEAGNAIRALNGHYIFPGEQASIKVRFADGEREHPVAPPD 181 (537)
Q Consensus 104 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~ 181 (537)
.+|..+|...| .|..+.+.... ..|+ .|+ +.+.+.|.++++.+ |... ...
T Consensus 21 ~~i~~~la~~~inI~~i~~~~~~----~~~~~~~~-~~d~~~a~~~L~~~-G~~v-----~~~----------------- 72 (144)
T 2f06_A 21 TEVTEVLAKENINLSALCIAENA----DFGILRGI-VSDPDKAYKALKDN-HFAV-----NIT----------------- 72 (144)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECS----SCEEEEEE-ESCHHHHHHHHHHT-TCCE-----EEE-----------------
T ss_pred HHHHHHHHHCCCCEEEEEEEecC----CCCEEEEE-eCCHHHHHHHHHHc-CCeE-----eee-----------------
Confidence 56777777776 46555442211 1132 233 56677777776543 3211 000
Q ss_pred CcccccCCcC-CCHHHHHHHHcCCC-CeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHcCCceE
Q 009356 182 KLYVGCLSKQ-TSKKEIEEVFSPYG-HIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGLNGTFT 246 (537)
Q Consensus 182 ~l~V~nl~~~-~te~~L~~~F~~~G-~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~lng~~~ 246 (537)
.++.-++++. -.-.++.+.+.+.| .|..+..... ..+....+.+++.+.|.+++.. .|..+
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~---~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN---NNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEcc---CCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 1111133332 23456677776665 3656555421 1456777899999988888875 45544
No 459
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.94 E-value=1.9e+02 Score=22.32 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=47.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeccCCCCCCccceEEEEEccHHHHHHHHHHh
Q 009356 87 GIPAKLYVAPVPRTATEEDIRPLFEEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAIRAL 151 (537)
Q Consensus 87 ~~~~~LfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 151 (537)
...+-+-|-|||..+-+.++--.....|---.|..+. |-|.|.|.+.++-..||..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 3457788999999999988888888888766676544 57999999999999999776
No 460
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.32 E-value=2e+02 Score=22.27 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=44.3
Q ss_pred CCCCcccccCCcCCCHHHHHHHHcCCCCeeEEEEEeecCCCcceEEEEEEcCHHHHHHHHHHc
Q 009356 179 PPDKLYVGCLSKQTSKKEIEEVFSPYGHIEDIFIVRDELKQSRGCAFVQFSHREMALAAISGL 241 (537)
Q Consensus 179 ~~~~l~V~nl~~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~rg~afV~F~~~~~A~~Ai~~l 241 (537)
..|-|-|-|+|..+-..++.-.....|---.|..+ .|-|.+.|.+.++-.-||..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 35667788999999888887777777765566554 367999999999999999876
No 461
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=26.07 E-value=1e+02 Score=24.94 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhhc-cCC---eEEE-EeccCCCCCCccceEEEEEccHHHHHHH
Q 009356 99 RTATEEDIRPLFEE-HGN---VIEV-VLPKDKRTGQQQGYCFVKFTIFEEAGNA 147 (537)
Q Consensus 99 ~~~te~~L~~~F~~-~G~---I~~v-~i~~d~~tg~~kG~aFV~F~~~e~A~~A 147 (537)
.+.+..+|++.+.. |+. ++-| .+...-..|++.|||.| |.|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46778888887764 443 2222 33333345677788866 7777766643
No 462
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.41 E-value=1.1e+02 Score=24.50 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHhhc-cC---CeEEE-EeccCCCCCCccceEEEEEccHHHHHH
Q 009356 99 RTATEEDIRPLFEE-HG---NVIEV-VLPKDKRTGQQQGYCFVKFTIFEEAGN 146 (537)
Q Consensus 99 ~~~te~~L~~~F~~-~G---~I~~v-~i~~d~~tg~~kG~aFV~F~~~e~A~~ 146 (537)
.+.+..+|++.+.. |+ .++-| .+...-..|++.|||.| |.|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 57788899887764 44 22222 33334345677777766 666666554
No 463
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=24.13 E-value=37 Score=27.09 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHhhc-cCCeEEEEeccCCC----CCCccceEEEEEccHHHHHH
Q 009356 99 RTATEEDIRPLFEE-HGNVIEVVLPKDKR----TGQQQGYCFVKFTIFEEAGN 146 (537)
Q Consensus 99 ~~~te~~L~~~F~~-~G~I~~v~i~~d~~----tg~~kG~aFV~F~~~e~A~~ 146 (537)
.+.+..+|++.+.. |+.-.++.++..-. .|++.|||.| |.|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46778888876664 44322222322222 3566677765 555554443
No 464
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.84 E-value=1.5e+02 Score=22.81 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeccCCCCCCccceEEEEEccHHHHHHHH
Q 009356 92 LYVAPVPRTATEEDIRPLFEE-HG-NVIEVVLPKDKRTGQQQGYCFVKFTIFEEAGNAI 148 (537)
Q Consensus 92 LfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 148 (537)
-|+-....+.++.+|++.++. || .|.+|..+.-+ .| .-=|||.+....+|....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHH
Confidence 445556789999999999986 66 67787766644 11 123999998888777654
No 465
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.00 E-value=99 Score=27.24 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=52.1
Q ss_pred CCHHHHHHHh--hccCCeEEEEeccCCCCCCccceEEEEEccHHH-HHHHHHHhcCceeecCCceeEEEeeccCCCCCCC
Q 009356 101 ATEEDIRPLF--EEHGNVIEVVLPKDKRTGQQQGYCFVKFTIFEE-AGNAIRALNGHYIFPGEQASIKVRFADGEREHPV 177 (537)
Q Consensus 101 ~te~~L~~~F--~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 177 (537)
.+..+|++.| ..|.++. |+....+ .-++|++.|+|.+.-. -..|+ .|+...-..+.++ ..|.....
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~-~fek~Fe~~~~GK---~dW~~~~~---- 101 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL-LFDKAYTVDGHGK---KDWLKKDG---- 101 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH-HHHHHHHHTTCSH---HHHTCSSS----
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH-HHHHHHHHcCCCH---HHHhhCCC----
Confidence 3457899977 8998865 5556653 3478999999976443 33444 4443322222222 23322211
Q ss_pred CCCCCcc--cccCCcCCCHHHHHHHHcCCCCeeEE
Q 009356 178 APPDKLY--VGCLSKQTSKKEIEEVFSPYGHIEDI 210 (537)
Q Consensus 178 ~~~~~l~--V~nl~~~~te~~L~~~F~~~G~I~~v 210 (537)
....|| |.+-.+--...-|-+++++.|.++.|
T Consensus 102 -~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv 135 (172)
T 4e8u_A 102 -PKLGLYGWIARADDYNGNNIIGENLRKTGDLKTI 135 (172)
T ss_dssp -CCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEH
T ss_pred -CCCceEEEecccccccCCChHHHHHHHcCCcccH
Confidence 123444 21111111113456788888887766
No 466
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.00 E-value=21 Score=28.93 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHcCCCCeeEEEEEeec-CCCcceEE--EEEEcCHHHHHHHHHHcCCce
Q 009356 191 QTSKKEIEEVFSPYGHIEDIFIVRDE-LKQSRGCA--FVQFSHREMALAAISGLNGTF 245 (537)
Q Consensus 191 ~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~rg~a--fV~F~~~~~A~~Ai~~lng~~ 245 (537)
..++++|..+..+.+ +..+.+.+.. .|+. -|. +-.|.+.++|.+|++.|-...
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 345667777777776 4556666542 3332 232 337899999999999886544
Done!