Query 009357
Match_columns 537
No_of_seqs 339 out of 1230
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 12:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1338 Uncharacterized conser 100.0 5.8E-32 1.3E-36 270.9 16.6 257 7-334 7-273 (466)
2 KOG1337 N-methyltransferase [G 100.0 1E-29 2.3E-34 275.3 22.4 287 6-363 3-320 (472)
3 PF00856 SET: SET domain; Int 99.6 7.5E-15 1.6E-19 134.0 8.8 49 262-318 112-162 (162)
4 PF09273 Rubis-subs-bind: Rubi 98.8 2.3E-08 5.1E-13 89.0 8.4 110 350-513 2-111 (128)
5 smart00317 SET SET (Su(var)3-9 97.9 8.8E-06 1.9E-10 70.2 4.1 48 264-317 69-116 (116)
6 KOG1085 Predicted methyltransf 93.0 0.08 1.7E-06 52.7 3.1 51 270-327 335-386 (392)
7 KOG2589 Histone tail methylase 92.6 0.12 2.6E-06 53.2 3.9 56 263-338 192-247 (453)
8 KOG4442 Clathrin coat binding 87.7 0.55 1.2E-05 52.3 4.0 41 269-318 194-237 (729)
9 KOG1079 Transcriptional repres 84.1 0.96 2.1E-05 50.3 3.6 41 269-318 666-709 (739)
10 smart00317 SET SET (Su(var)3-9 81.2 1.9 4.1E-05 36.5 3.8 32 28-60 4-36 (116)
11 COG2940 Proteins containing SE 74.5 1.9 4.2E-05 47.3 2.2 44 269-319 406-450 (480)
12 KOG1080 Histone H3 (Lys4) meth 70.8 3.7 7.9E-05 48.7 3.5 44 268-318 939-983 (1005)
13 KOG1082 Histone H3 (Lys9) meth 67.1 4.8 0.00011 42.6 3.2 50 270-322 274-324 (364)
14 KOG1083 Putative transcription 64.0 6.5 0.00014 46.1 3.6 44 269-321 1251-1297(1306)
15 KOG2461 Transcription factor B 29.2 42 0.00091 35.9 2.7 32 299-330 124-155 (396)
16 KOG2084 Predicted histone tail 26.3 85 0.0019 33.7 4.6 59 263-331 200-265 (482)
17 KOG1085 Predicted methyltransf 25.7 70 0.0015 32.5 3.4 30 24-54 256-286 (392)
18 KOG1338 Uncharacterized conser 25.6 8.2 0.00018 40.7 -3.2 71 262-343 269-343 (466)
19 PF09652 Cas_VVA1548: Putative 21.2 41 0.00089 28.3 0.7 42 8-59 5-48 (93)
No 1
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=5.8e-32 Score=270.89 Aligned_cols=257 Identities=20% Similarity=0.266 Sum_probs=204.7
Q ss_pred hCHHHHHHHHHHCC-ccccC-eeEEEe---cCCCceEEEEcCCC-CCCeEEEcCcccccCccccccCCCCChHHHhhhcC
Q 009357 7 AKLEPFLQWLQVNK-VELRG-CKIKYS---DESKGFGIFSSNEF-SDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFED 80 (537)
Q Consensus 7 ~~~~~fl~Wl~~~G-~~~~~-v~i~~~---~~~~GrGlvAt~dI-~ge~ll~IP~~~~lt~~~~~~~~~lg~~~~~~l~~ 80 (537)
+....|+.|++..+ .++++ |.+..- .+..|+|++|+++| +|+.||++|++++|++.+...-..+....+.++
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~L-- 84 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLL-- 84 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHh--
Confidence 34789999999987 77876 766642 22358999999999 999999999999999887543221333344455
Q ss_pred CCCChHHHHHHHHHHHhhcCC-CChHhHHhhCCC--CCCCCCCCCHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009357 81 GEVDDRFLMILFLTVERLRKN-SSWKPYLDMLPT--TFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLV 157 (537)
Q Consensus 81 ~~l~~~~~LaL~Ll~Er~~~~-S~w~pYl~~LP~--~~~tPl~ws~~el~~L~gt~l~~~~~~~~~~~~~~y~~~~~~l~ 157 (537)
..++.|..|++.|++|..-++ |+|+|||+.+|+ ..++|+||+++|++.|..+.+...+.++.+++.++|...+.++.
T Consensus 85 ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf~ 164 (466)
T KOG1338|consen 85 NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPFK 164 (466)
T ss_pred hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHHH
Confidence 367899999999999987654 999999999998 58899999999999887666666688899999999999999999
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccccccccccccCcCCcccccccccchhhh
Q 009357 158 KKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNE 237 (537)
Q Consensus 158 ~~l~~l~~~~~~~~t~e~f~WA~siV~SRaf~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 237 (537)
+.+|.++ ..+++++|.+|++++++.+|.++...+ .++.. .+.
T Consensus 165 ~~~p~vf----s~~slEdF~y~~Al~laysfdve~~~s---------~~~~e-----ee~-------------------- 206 (466)
T KOG1338|consen 165 QHCPIVF----SRPSLEDFMYAYALGLAYSFDVEFLLS---------LDNLE-----EES-------------------- 206 (466)
T ss_pred HhCcchh----cccCHHHHHHHHHHHHHHheeeehhcc---------hhhhh-----hhh--------------------
Confidence 9988765 459999999999999999999986432 00000 000
Q ss_pred hhhhccccCCCCccccccCCCcccceeeeeeccccCCCCC-CCceEEEcCCCcccccccceeEEEeecccCCCCCeEeec
Q 009357 238 AQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLK-AAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISIS 316 (537)
Q Consensus 238 ~~~v~~~~ng~~~~~~~~~~d~~~~~~LvPl~DmlNH~~~-~~~~~~~d~~g~~~~~~~s~~l~~~a~r~i~~GeEIfis 316 (537)
+......+|+|++||+||+.. +|+...++.+ ++.|+|.|+|.+|+||+++
T Consensus 207 -------------------e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~N----------cL~mva~r~iekgdev~n~ 257 (466)
T KOG1338|consen 207 -------------------EIECNGKLMTPIADFLNHDGLKANANLRYEDN----------CLEMVADRNIEKGDEVDNS 257 (466)
T ss_pred -------------------ccccCcccccchhhhhccchhhcccceeccCc----------ceeeeecCCCCCccccccc
Confidence 000112699999999999986 7777777642 5899999999999999999
Q ss_pred cCCCChHHHHHhCCcccC
Q 009357 317 YGNKGNEELLYLYGFVID 334 (537)
Q Consensus 317 YG~~sN~eLL~~YGFv~~ 334 (537)
||-|+|+ |++||.+.-
T Consensus 258 dg~~p~~--l~~l~ka~c 273 (466)
T KOG1338|consen 258 DGLKPMG--LLKLTKALC 273 (466)
T ss_pred cccCcch--hhhhhhhcc
Confidence 9999999 888888774
No 2
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.97 E-value=1e-29 Score=275.26 Aligned_cols=287 Identities=26% Similarity=0.383 Sum_probs=196.2
Q ss_pred hhCHHHHHHHHHHCCccccC-eeEEEecCCCceEEEEcCC-C-CCCeEEEcCcccccCccccccCCCCChH---------
Q 009357 6 EAKLEPFLQWLQVNKVELRG-CKIKYSDESKGFGIFSSNE-F-SDGVLLVVPLDLAITPMRVLQDPLIGPE--------- 73 (537)
Q Consensus 6 ~~~~~~fl~Wl~~~G~~~~~-v~i~~~~~~~GrGlvAt~d-I-~ge~ll~IP~~~~lt~~~~~~~~~lg~~--------- 73 (537)
.+++..|++|++.+|+..+. +.+.... ..|.+++|..+ + ..+.+..+..........+...+..|..
T Consensus 3 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (472)
T KOG1337|consen 3 VDVLSALLRWAQCNGISLSSSLDLRPDE-LKGLVRWAASESIASSENIKSLKFWLTGNGLSSSKSSLPGNDIDEWPLLVS 81 (472)
T ss_pred hhHHHHhhhHHhccCccCCcccccCccc-cCcceeeeecccCCCccccccceeccccCCcchhhhccccccccccchhhh
Confidence 46789999999999999876 4444433 36777777733 3 3333333333222222221111111100
Q ss_pred HHh--------------hhcC--CCCChH-HHHHHHHHHHhhcC-CCChHhHHhhCCCCCCCCCCCCHHHHhcCCCCchH
Q 009357 74 CRA--------------MFED--GEVDDR-FLMILFLTVERLRK-NSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLY 135 (537)
Q Consensus 74 ~~~--------------~l~~--~~l~~~-~~LaL~Ll~Er~~~-~S~w~pYl~~LP~~~~tPl~ws~~el~~L~gt~l~ 135 (537)
++. +... -..+.. ..+++++++++... .|.|+||+..||+.+++|++|...++..|.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~~l~~~~~~ 161 (472)
T KOG1337|consen 82 IRLIKGEKLLLVPPLLLLIAKRKPYNDLLPIALALFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVKSLLSTPLF 161 (472)
T ss_pred hhhhhhhhhccCCchhhhccccccCccccHHHHHHHHHHhhhccccccchhhhhhchhhcCCccccCHHHHHHhhcchhh
Confidence 000 0000 011223 78899999999864 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccccccc
Q 009357 136 RATELQKQNLLTLYDDKVKDLVKKLLVLD-GDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNS 214 (537)
Q Consensus 136 ~~~~~~~~~~~~~y~~~~~~l~~~l~~l~-~~~~~~~t~e~f~WA~siV~SRaf~~~~~~~~~~P~~~~~~~~~~~~~~~ 214 (537)
..+..++..++..+..+. .+....+..+ ......+++++|.||+++|+||+|+.+.... |
T Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~------------~------ 222 (472)
T KOG1337|consen 162 EIVASRRQNLVNKSAELL-EVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQR------------L------ 222 (472)
T ss_pred HHHHHHHHHhhhhHHHHH-HHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccc------------c------
Confidence 988887777777555543 3344444332 1122338999999999999999999875421 0
Q ss_pred cccccCcCCcccccccccchhhhhhhhccccCCCCccccccCCCcccceeeeeeccccCCCCCCCceEEEcCCCcccccc
Q 009357 215 AELSNDHNSRGELINGLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVP 294 (537)
Q Consensus 215 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~ng~~~~~~~~~~d~~~~~~LvPl~DmlNH~~~~~~~~~~d~~g~~~~~~ 294 (537)
. . ++.....+|+|++||+||+++. +.+.++....
T Consensus 223 ---~------------------------~-------------~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~----- 256 (472)
T KOG1337|consen 223 ---T------------------------A-------------GDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDE----- 256 (472)
T ss_pred ---c------------------------c-------------CCCCcchhhhhhHHhhccCchh-ccccccCCCC-----
Confidence 0 0 0001137999999999999987 4444433211
Q ss_pred cceeEEEeecccCCCCCeEeeccCCCChHHHHHhCCcccCCCCCceEEEeccccccCCCCChHHHHHHH
Q 009357 295 FSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLL 363 (537)
Q Consensus 295 ~s~~l~~~a~r~i~~GeEIfisYG~~sN~eLL~~YGFv~~~Np~D~v~l~l~~~~~~~~~~~~~k~~ll 363 (537)
.+.+++.++|++||||||+||+++|++||.+||||.++||+|.|.+++ .+...++.+..|...+
T Consensus 257 ---~~~l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~--~l~~~~~~~~~~~~~~ 320 (472)
T KOG1337|consen 257 ---AVELVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKL--ALPPEDVSYLDKSDVL 320 (472)
T ss_pred ---cEEEEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEee--cccccccchhHHHHHH
Confidence 267888999999999999999999999999999999999999999875 6666666666665543
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.56 E-value=7.5e-15 Score=134.05 Aligned_cols=49 Identities=31% Similarity=0.371 Sum_probs=40.5
Q ss_pred ceeeeeeccccCCCCCCCceEEEc--CCCcccccccceeEEEeecccCCCCCeEeeccC
Q 009357 262 IEGLVPGIDFCNHDLKAAATWEVD--GTGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (537)
Q Consensus 262 ~~~LvPl~DmlNH~~~~~~~~~~d--~~g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG 318 (537)
..+|+|++||+||+..+||.+.++ ..+ ..+.++|.|+|++||||||+||
T Consensus 112 ~~~l~p~~d~~NHsc~pn~~~~~~~~~~~--------~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 112 GIALYPFADMLNHSCDPNCEVSFDFDGDG--------GCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEETGGGGSEEESSTSEEEEEEEETTT--------TEEEEEESS-B-TTSBEEEEST
T ss_pred ccccCcHhHheccccccccceeeEeeccc--------ceEEEEECCccCCCCEEEEEEC
Confidence 379999999999999999988776 222 2588999999999999999999
No 4
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=98.77 E-value=2.3e-08 Score=89.02 Aligned_cols=110 Identities=31% Similarity=0.378 Sum_probs=73.8
Q ss_pred cCCCCChHHHHHHHHHhcchhcccCCchhhccccccCCCCCCCCCCCccccccccccccccccccccccccCCCchhHHH
Q 009357 350 IHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYLNKLVFPENFLT 429 (537)
Q Consensus 350 ~~~~~~~~~k~~ll~~~~~~~~~~lp~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~p~~ll~ 429 (537)
.++||++..|.++|+.+|.... +.|.. +.++. +|++|++
T Consensus 2 ~~~D~l~~~K~~lL~~~gl~~~----------~~f~l------------------------------~~~~~-~~~~Ll~ 40 (128)
T PF09273_consen 2 SPSDPLFEEKKQLLEEHGLSGD----------QTFDL------------------------------RADGP-LPPELLA 40 (128)
T ss_dssp -TTSTTHHHHHHHHHHTTS-SE----------EEEEE------------------------------ECCSS-SHHHHHH
T ss_pred CchhhhHHHHHHHHHHCCCCCC----------ceeee------------------------------eCCCC-CCHHHHH
Confidence 3578999999999998876311 12221 11122 7889999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhhcCCCCCCCChhHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHhh
Q 009357 430 ALRTIAMQEDEISKVSSLLEELVGSGGERQPSDAEVRAAVWETCGDSGALQLLVDLLQAKLTELEESSGTEDYDSELLLK 509 (537)
Q Consensus 430 ~lR~l~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~~l~~~l~~~~~~l~~y~tt~~~D~~lL~~ 509 (537)
++|+++|+++|+..+.+....... .....|.+.+.+. .+++.|.+++..++ +.|+||+++|+++|++
T Consensus 41 ~lRv~~~~~~e~~~~~~~~~~~~~-~~~~~~ls~~nE~---------~~l~~L~~~~~~~L---~~y~TtleeD~~~L~~ 107 (128)
T PF09273_consen 41 ALRVLLMTEEELRALKSLADSSEW-SDRSEPLSPENEI---------AALQFLIDLCEARL---SAYPTTLEEDEELLQS 107 (128)
T ss_dssp HHHHHHSCHHHHHHHHHCGTTTHC-CHCCC-SBHHHHH---------HHHHHHHHHHHHHH---TTSSS-HHHHHHHCHT
T ss_pred HHHHHHcChHHHHHHHHhhccccc-ccccCCCchhhHH---------HHHHHHHHHHHHHH---HhCCCcHHHHHHHHhc
Confidence 999999999999998764332211 1122344444444 46777788888655 9999999999999998
Q ss_pred ccCC
Q 009357 510 SCIT 513 (537)
Q Consensus 510 ~~~~ 513 (537)
....
T Consensus 108 ~~~~ 111 (128)
T PF09273_consen 108 NDLS 111 (128)
T ss_dssp CCCH
T ss_pred CCCc
Confidence 6554
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.93 E-value=8.8e-06 Score=70.24 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=39.0
Q ss_pred eeeeeccccCCCCCCCceEEEcCCCcccccccceeEEEeecccCCCCCeEeecc
Q 009357 264 GLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISY 317 (537)
Q Consensus 264 ~LvPl~DmlNH~~~~~~~~~~d~~g~~~~~~~s~~l~~~a~r~i~~GeEIfisY 317 (537)
.+.|+++|+||+..+|+.+.....+.. ..+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~------~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGD------SRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCC------cEEEEEECCCcCCCCEEeecC
Confidence 589999999999999998865432211 147788999999999999999
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=92.97 E-value=0.08 Score=52.73 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=38.5
Q ss_pred cccCCCCCCCceEEE-cCCCcccccccceeEEEeecccCCCCCeEeeccCCCChHHHHH
Q 009357 270 DFCNHDLKAAATWEV-DGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLY 327 (537)
Q Consensus 270 DmlNH~~~~~~~~~~-d~~g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG~~sN~eLL~ 327 (537)
-++||+.-.|+.-.+ +-+| .| .|++.|.++|.+|||++..||++|-+-++.
T Consensus 335 RLINHS~~gNl~TKvv~Idg----~p---HLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 335 RLINHSVRGNLKTKVVEIDG----SP---HLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhhcccccCcceeeEEEecC----Cc---eEEEEeccccccchhhhhhccccchhHHhh
Confidence 378999877764332 2233 22 488999999999999999999999877654
No 7
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=92.60 E-value=0.12 Score=53.17 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=41.8
Q ss_pred eeeeeeccccCCCCCCCceEEEcCCCcccccccceeEEEeecccCCCCCeEeeccCCCChHHHHHhCCcccCCCCC
Q 009357 263 EGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPD 338 (537)
Q Consensus 263 ~~LvPl~DmlNH~~~~~~~~~~d~~g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG~~sN~eLL~~YGFv~~~Np~ 338 (537)
.-|=|. =++||+..+||++.. .|.. ...++..|+|++||||+--||. ||.-++|-+
T Consensus 192 LwLGPa-afINHDCrpnCkFvs--~g~~-------tacvkvlRDIePGeEITcFYgs----------~fFG~~N~~ 247 (453)
T KOG2589|consen 192 LWLGPA-AFINHDCRPNCKFVS--TGRD-------TACVKVLRDIEPGEEITCFYGS----------GFFGENNEE 247 (453)
T ss_pred heeccH-HhhcCCCCCCceeec--CCCc-------eeeeehhhcCCCCceeEEeecc----------cccCCCCce
Confidence 445563 489999999999854 3422 2456779999999999999997 677776643
No 8
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.71 E-value=0.55 Score=52.32 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=30.3
Q ss_pred ccccCCCCCCCce---EEEcCCCcccccccceeEEEeecccCCCCCeEeeccC
Q 009357 269 IDFCNHDLKAAAT---WEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (537)
Q Consensus 269 ~DmlNH~~~~~~~---~~~d~~g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG 318 (537)
+=|+||+..+||. |.+.+. ..+-+-+.+.|++||||+..|+
T Consensus 194 aRFiNHSC~PNa~~~KWtV~~~---------lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTVPDE---------LRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred HHhhcCCCCCCceeeeeeeCCe---------eEEEEeEecccCCCceeeEecc
Confidence 3489999999974 666431 1123347899999999999987
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=84.05 E-value=0.96 Score=50.26 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=31.2
Q ss_pred ccccCCCCCCCceEEE---cCCCcccccccceeEEEeecccCCCCCeEeeccC
Q 009357 269 IDFCNHDLKAAATWEV---DGTGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (537)
Q Consensus 269 ~DmlNH~~~~~~~~~~---d~~g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG 318 (537)
+=++||+..+||-..+ .+++ .+-+.|.|.|.+|||+|..|+
T Consensus 666 ~rFANHS~nPNCYAkvm~V~Gdh---------RIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 666 IRFANHSFNPNCYAKVMMVAGDH---------RIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhccCCCCCCcEEEEEEecCCc---------ceeeeehhhcccCceeeeeec
Confidence 4589999999986543 2222 245678999999999999997
No 10
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=81.17 E-value=1.9 Score=36.46 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=25.1
Q ss_pred EEEecCCCceEEEEcCCC-CCCeEEEcCcccccC
Q 009357 28 IKYSDESKGFGIFSSNEF-SDGVLLVVPLDLAIT 60 (537)
Q Consensus 28 i~~~~~~~GrGlvAt~dI-~ge~ll~IP~~~~lt 60 (537)
+...+ +.|+||+|+++| +|+.|+..|-.++..
T Consensus 4 ~~~~~-~~G~gl~a~~~i~~g~~i~~~~g~~~~~ 36 (116)
T smart00317 4 VFKSP-GKGWGVRATEDIPKGEFIGEYVGEIITS 36 (116)
T ss_pred EEecC-CCcEEEEECCccCCCCEEEEEEeEEECH
Confidence 34445 599999999999 899888887776554
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=74.46 E-value=1.9 Score=47.34 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=33.7
Q ss_pred ccccCCCCCCCceEEEcC-CCcccccccceeEEEeecccCCCCCeEeeccCC
Q 009357 269 IDFCNHDLKAAATWEVDG-TGLITGVPFSMYLLSVERSSFHSEKEISISYGN 319 (537)
Q Consensus 269 ~DmlNH~~~~~~~~~~d~-~g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG~ 319 (537)
.=++||+..+|+.+.... .|. +.+...+.++|++||||.+.||.
T Consensus 406 ~r~~nHS~~pN~~~~~~~~~g~-------~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 406 ARFINHSCTPNCEASPIEVNGI-------FKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred cceeecCCCCCcceeccccccc-------ceeeecccccchhhhhhcccccc
Confidence 338999999998876432 231 23667789999999999999985
No 12
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=70.83 E-value=3.7 Score=48.68 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=32.9
Q ss_pred eccccCCCCCCCceEEEcC-CCcccccccceeEEEeecccCCCCCeEeeccC
Q 009357 268 GIDFCNHDLKAAATWEVDG-TGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (537)
Q Consensus 268 l~DmlNH~~~~~~~~~~d~-~g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG 318 (537)
++=++||+..+||.-.+-. +|. ..+++.|.|+|.+||||+..|-
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~-------~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGD-------KRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEecCe-------eEEEEEEecccccCceeeeecc
Confidence 4558999999998654321 232 2478889999999999998875
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=67.11 E-value=4.8 Score=42.55 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=34.7
Q ss_pred cccCCCCCCCceEEEcCC-CcccccccceeEEEeecccCCCCCeEeeccCCCCh
Q 009357 270 DFCNHDLKAAATWEVDGT-GLITGVPFSMYLLSVERSSFHSEKEISISYGNKGN 322 (537)
Q Consensus 270 DmlNH~~~~~~~~~~d~~-g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG~~sN 322 (537)
=++||+..+|+.|..-.. +..... ..+.+.|.++|++|+|++..||..-+
T Consensus 274 RfinHSC~PN~~~~~v~~~~~~~~~---~~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 274 RFINHSCSPNLLYQAVFQDEFVLLY---LRIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred ccccCCCCccceeeeeeecCCccch---heeeeeeccccCCCcccchhhccccc
Confidence 389999999988753111 111111 24566789999999999999997444
No 14
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=64.00 E-value=6.5 Score=46.08 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=32.2
Q ss_pred ccccCCCCCCCce---EEEcCCCcccccccceeEEEeecccCCCCCeEeeccCCCC
Q 009357 269 IDFCNHDLKAAAT---WEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKG 321 (537)
Q Consensus 269 ~DmlNH~~~~~~~---~~~d~~g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG~~s 321 (537)
+-+.||+..+||. |.++ |. ..+.+.|.++|.+||||+..|..++
T Consensus 1251 ~RfinhscKPNc~~qkwSVN--G~-------~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVN--GE-------YRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred ccccccccCCCCcccccccc--ce-------eeeeeeecCCCCCCceEEEeccccc
Confidence 3467888888864 5443 32 1356789999999999999997643
No 15
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=29.24 E-value=42 Score=35.95 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.8
Q ss_pred EEEeecccCCCCCeEeeccCCCChHHHHHhCC
Q 009357 299 LLSVERSSFHSEKEISISYGNKGNEELLYLYG 330 (537)
Q Consensus 299 l~~~a~r~i~~GeEIfisYG~~sN~eLL~~YG 330 (537)
+..++.|+|++|||+.+.||.--+.+|...+|
T Consensus 124 Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 124 IFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred eEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 56678999999999999999988888888887
No 16
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=26.34 E-value=85 Score=33.65 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=41.9
Q ss_pred eeeeeeccccCCCCCCCceEEEcCCCcccccccceeEEEeecccCCCCC-eEeeccCC--CC----hHHHHHhCCc
Q 009357 263 EGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEK-EISISYGN--KG----NEELLYLYGF 331 (537)
Q Consensus 263 ~~LvPl~DmlNH~~~~~~~~~~d~~g~~~~~~~s~~l~~~a~r~i~~Ge-EIfisYG~--~s----N~eLL~~YGF 331 (537)
.+|.|..=++||+..+|+...++..+ ..+.+...+.+++ +++++|-. .+ ...|-..|.|
T Consensus 200 ~~l~~~~~~~~hsC~pn~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 200 RGLFPGSSLFNHSCFPNISVIFDGRG----------LALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred eeecccchhcccCCCCCeEEEECCce----------eEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 68889888999999999886665443 2344566677766 99999974 22 3456666666
No 17
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=25.75 E-value=70 Score=32.47 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=23.7
Q ss_pred cCeeEEEecCCCceEEEEcCCC-CCCeEEEcC
Q 009357 24 RGCKIKYSDESKGFGIFSSNEF-SDGVLLVVP 54 (537)
Q Consensus 24 ~~v~i~~~~~~~GrGlvAt~dI-~ge~ll~IP 54 (537)
.++.+..+.+ .||||+|+..+ .|+-|+.--
T Consensus 256 egl~~~~~dg-KGRGv~a~~~F~rgdFVVEY~ 286 (392)
T KOG1085|consen 256 EGLLEVYKDG-KGRGVRAKVNFERGDFVVEYR 286 (392)
T ss_pred cceeEEeecc-ccceeEeecccccCceEEEEe
Confidence 3467777885 99999999999 888776543
No 18
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.60 E-value=8.2 Score=40.67 Aligned_cols=71 Identities=13% Similarity=-0.014 Sum_probs=52.7
Q ss_pred ceeeeeeccccCCCCCC-C-ceEEEcCCCcccccccceeEEEeecccCCCCCeEeeccCCCChHHHHHhCCccc-C-CCC
Q 009357 262 IEGLVPGIDFCNHDLKA-A-ATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVI-D-NNP 337 (537)
Q Consensus 262 ~~~LvPl~DmlNH~~~~-~-~~~~~d~~g~~~~~~~s~~l~~~a~r~i~~GeEIfisYG~~sN~eLL~~YGFv~-~-~Np 337 (537)
..+|+|+++|+|-.... + +..-+|..+. ..|++.|.| |.|..+.|+...+.++...|||.. . --|
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d---------~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p 337 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPND---------DTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKP 337 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCc---------chHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccc
Confidence 47999999999988652 2 3222332232 457778888 999999999999999999999544 3 378
Q ss_pred CceEEE
Q 009357 338 DDYLMI 343 (537)
Q Consensus 338 ~D~v~l 343 (537)
++.+-+
T Consensus 338 ~~g~lv 343 (466)
T KOG1338|consen 338 AIGKLV 343 (466)
T ss_pred cceeee
Confidence 887655
No 19
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=21.19 E-value=41 Score=28.29 Aligned_cols=42 Identities=12% Similarity=0.349 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHCCccccCeeEEEecCCCceEEEEcCCC-CCCeEE-EcCccccc
Q 009357 8 KLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEF-SDGVLL-VVPLDLAI 59 (537)
Q Consensus 8 ~~~~fl~Wl~~~G~~~~~v~i~~~~~~~GrGlvAt~dI-~ge~ll-~IP~~~~l 59 (537)
+..-.++|++++|+.++.+.-... ..+| +|++|+ ++|.+++-
T Consensus 5 RH~GAieW~~~qg~~iD~~v~Hld----------~~~i~~GD~ViGtLPvhLaA 48 (93)
T PF09652_consen 5 RHPGAIEWAKQQGIQIDHFVDHLD----------PADIQPGDVVIGTLPVHLAA 48 (93)
T ss_pred ecccHHHHHHHhCCCcceeeccCC----------HHHccCCCEEEEeCcHHHHH
Confidence 445678999999998876311111 3456 677766 78887653
Done!