Query 009358
Match_columns 537
No_of_seqs 223 out of 1916
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 12:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00044 multi-copper oxidase- 100.0 3E-100 6E-105 810.8 55.8 485 19-537 17-512 (596)
2 TIGR03389 laccase laccase, pla 100.0 4E-100 8E-105 817.5 57.1 497 27-537 1-498 (539)
3 PLN02991 oxidoreductase 100.0 7.8E-98 2E-102 788.2 54.1 453 26-537 25-489 (543)
4 PLN02354 copper ion binding / 100.0 1.3E-97 3E-102 791.7 54.3 467 24-537 22-497 (552)
5 PLN02792 oxidoreductase 100.0 1.8E-97 4E-102 786.8 52.9 467 25-537 12-482 (536)
6 PLN02168 copper ion binding / 100.0 3.1E-96 7E-101 777.6 55.8 459 27-537 24-494 (545)
7 PLN02835 oxidoreductase 100.0 3.6E-95 8E-100 772.0 55.5 457 25-537 25-490 (539)
8 KOG1263 Multicopper oxidases [ 100.0 2.3E-95 5E-100 764.5 52.6 492 20-537 19-514 (563)
9 PLN02191 L-ascorbate oxidase 100.0 5.6E-92 1.2E-96 753.8 55.0 495 6-537 3-525 (574)
10 PLN02604 oxidoreductase 100.0 8.1E-91 1.8E-95 746.7 55.6 495 9-537 4-525 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 9.2E-90 2E-94 736.6 53.9 476 29-537 1-502 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 3E-88 6.6E-93 722.7 51.5 466 30-537 9-510 (538)
13 TIGR01480 copper_res_A copper- 100.0 6.1E-70 1.3E-74 580.8 48.8 263 29-313 45-351 (587)
14 PRK10965 multicopper oxidase; 100.0 1.3E-62 2.9E-67 520.9 44.4 246 29-293 45-301 (523)
15 PRK10883 FtsI repressor; Provi 100.0 3.4E-60 7.3E-65 498.5 43.6 239 31-290 47-295 (471)
16 COG2132 SufI Putative multicop 100.0 2E-49 4.3E-54 419.1 39.7 378 42-537 46-427 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.1E-48 2.4E-53 390.5 26.6 268 22-315 20-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.8E-36 4E-41 258.6 12.2 116 35-150 1-117 (117)
19 PF00394 Cu-oxidase: Multicopp 100.0 2.2E-28 4.8E-33 222.0 13.3 150 161-314 1-159 (159)
20 TIGR03095 rusti_cyanin rusticy 99.8 8.5E-18 1.8E-22 148.9 13.0 102 44-147 37-148 (148)
21 PF07731 Cu-oxidase_2: Multico 99.7 4.8E-18 1E-22 150.8 7.4 85 449-537 29-113 (138)
22 TIGR01480 copper_res_A copper- 99.7 3.5E-16 7.6E-21 168.1 20.9 228 51-294 249-574 (587)
23 PRK10965 multicopper oxidase; 99.5 1.3E-12 2.8E-17 139.6 22.3 236 47-296 211-512 (523)
24 PLN02835 oxidoreductase 99.5 2.6E-12 5.6E-17 137.8 24.0 254 48-312 191-512 (539)
25 PRK10883 FtsI repressor; Provi 99.5 2.8E-12 6.1E-17 135.8 19.7 223 46-296 207-457 (471)
26 TIGR03389 laccase laccase, pla 99.5 1.6E-11 3.6E-16 132.6 25.7 244 49-296 167-509 (539)
27 TIGR03096 nitroso_cyanin nitro 99.4 1.4E-12 3E-17 111.6 12.4 97 25-137 20-124 (135)
28 COG2132 SufI Putative multicop 99.3 4.6E-11 9.9E-16 126.9 18.4 235 45-296 186-438 (451)
29 TIGR02376 Cu_nitrite_red nitri 99.3 1.7E-10 3.7E-15 115.8 19.3 224 192-537 47-273 (311)
30 PLN02991 oxidoreductase 99.3 1.2E-09 2.6E-14 116.9 25.6 241 48-293 190-497 (543)
31 PLN02168 copper ion binding / 99.3 5.1E-10 1.1E-14 119.9 22.2 240 48-292 188-501 (545)
32 PLN02354 copper ion binding / 99.2 7.8E-10 1.7E-14 119.0 21.0 240 49-293 190-505 (552)
33 PLN02792 oxidoreductase 99.2 4.9E-09 1.1E-13 112.4 25.8 242 47-293 178-490 (536)
34 TIGR03388 ascorbase L-ascorbat 99.2 1.1E-09 2.5E-14 118.3 21.0 232 61-296 204-513 (541)
35 TIGR03390 ascorbOXfungal L-asc 99.2 1E-09 2.2E-14 118.4 20.0 244 49-296 172-521 (538)
36 PLN02604 oxidoreductase 99.2 2.2E-09 4.8E-14 116.5 22.2 231 60-296 224-536 (566)
37 PLN02191 L-ascorbate oxidase 99.0 1.4E-08 3.1E-13 110.1 20.7 238 53-296 219-536 (574)
38 PF07731 Cu-oxidase_2: Multico 99.0 6E-09 1.3E-13 92.2 11.1 80 211-294 32-122 (138)
39 PLN00044 multi-copper oxidase- 98.9 1.1E-07 2.3E-12 102.8 21.3 228 60-293 217-520 (596)
40 PRK02710 plastocyanin; Provisi 98.7 3E-07 6.6E-12 78.9 11.6 73 60-147 47-119 (119)
41 PF13473 Cupredoxin_1: Cupredo 98.6 8.1E-08 1.8E-12 80.5 7.4 88 26-146 17-104 (104)
42 KOG1263 Multicopper oxidases [ 98.6 5.6E-06 1.2E-10 88.7 22.1 244 48-295 192-524 (563)
43 TIGR02656 cyanin_plasto plasto 98.2 5.2E-06 1.1E-10 68.8 8.5 81 60-147 17-99 (99)
44 TIGR02657 amicyanin amicyanin. 98.1 1.7E-05 3.7E-10 63.4 8.6 73 60-147 11-83 (83)
45 PF00394 Cu-oxidase: Multicopp 98.1 1.1E-05 2.3E-10 73.2 8.3 85 47-132 35-136 (159)
46 PF00127 Copper-bind: Copper b 98.0 1.9E-05 4E-10 65.5 7.7 81 60-147 17-99 (99)
47 PRK02888 nitrous-oxide reducta 98.0 2.9E-05 6.2E-10 83.1 9.9 100 39-149 532-635 (635)
48 PF07732 Cu-oxidase_3: Multico 97.9 1.6E-05 3.4E-10 68.0 5.9 86 193-294 15-101 (117)
49 PF06525 SoxE: Sulfocyanin (So 97.6 0.00083 1.8E-08 61.4 12.0 102 49-151 74-190 (196)
50 TIGR03094 sulfo_cyanin sulfocy 97.6 0.0011 2.3E-08 59.4 12.3 98 50-151 74-189 (195)
51 COG3794 PetE Plastocyanin [Ene 97.3 0.0011 2.5E-08 56.7 8.3 75 60-148 54-128 (128)
52 TIGR02375 pseudoazurin pseudoa 97.2 0.0018 3.9E-08 54.9 8.3 75 60-150 15-90 (116)
53 TIGR03095 rusti_cyanin rusticy 97.2 0.0022 4.7E-08 57.1 8.6 86 191-292 40-133 (148)
54 TIGR03096 nitroso_cyanin nitro 97.1 0.003 6.5E-08 54.6 8.1 61 212-292 60-120 (135)
55 TIGR03102 halo_cynanin halocya 97.0 0.0049 1.1E-07 52.2 8.7 73 60-147 42-115 (115)
56 PF13473 Cupredoxin_1: Cupredo 96.5 0.011 2.4E-07 49.3 7.4 61 212-292 34-94 (104)
57 PRK10378 inactive ferrous ion 94.6 0.3 6.5E-06 50.0 10.8 75 60-150 44-119 (375)
58 PF06525 SoxE: Sulfocyanin (So 94.3 0.42 9E-06 44.0 9.8 104 193-312 74-186 (196)
59 PF00116 COX2: Cytochrome C ox 94.2 0.31 6.7E-06 41.7 8.5 73 59-146 45-119 (120)
60 COG4454 Uncharacterized copper 94.1 0.44 9.6E-06 42.0 9.2 87 57-148 60-158 (158)
61 TIGR02656 cyanin_plasto plasto 94.0 0.18 3.9E-06 41.5 6.4 69 212-291 16-85 (99)
62 TIGR02695 azurin azurin. Azuri 93.9 0.31 6.7E-06 41.5 7.6 84 60-145 16-124 (125)
63 COG4454 Uncharacterized copper 93.9 0.11 2.4E-06 45.6 5.1 75 212-292 62-142 (158)
64 PRK02888 nitrous-oxide reducta 92.9 0.6 1.3E-05 50.7 9.9 64 212-294 554-619 (635)
65 TIGR02866 CoxB cytochrome c ox 92.2 0.81 1.8E-05 43.0 8.7 76 60-150 117-194 (201)
66 PF00116 COX2: Cytochrome C ox 91.3 2.5 5.5E-05 36.1 10.0 62 213-295 46-107 (120)
67 PF00127 Copper-bind: Copper b 87.7 1.7 3.7E-05 35.7 6.1 65 212-292 16-86 (99)
68 TIGR02695 azurin azurin. Azuri 87.0 5.6 0.00012 34.0 8.8 81 212-292 15-112 (125)
69 PRK02710 plastocyanin; Provisi 85.3 3.3 7.2E-05 35.3 6.9 61 212-292 46-106 (119)
70 COG1622 CyoA Heme/copper-type 84.9 3.1 6.7E-05 40.3 7.1 77 60-151 137-215 (247)
71 PF12690 BsuPI: Intracellular 84.2 1.9 4.2E-05 34.1 4.5 35 95-129 40-80 (82)
72 COG4263 NosZ Nitrous oxide red 83.7 2 4.3E-05 44.4 5.4 77 60-147 558-636 (637)
73 TIGR02657 amicyanin amicyanin. 83.0 5.3 0.00011 31.5 6.7 63 212-292 10-72 (83)
74 COG3794 PetE Plastocyanin [Ene 82.4 5.4 0.00012 34.4 6.8 63 211-292 52-114 (128)
75 PF12690 BsuPI: Intracellular 79.6 8.5 0.00018 30.4 6.6 33 258-290 49-82 (82)
76 TIGR02375 pseudoazurin pseudoa 77.4 18 0.00038 30.7 8.3 74 212-312 14-87 (116)
77 TIGR02866 CoxB cytochrome c ox 77.3 9.6 0.00021 35.7 7.5 61 213-294 117-177 (201)
78 COG1470 Predicted membrane pro 76.8 1.1E+02 0.0023 32.5 16.5 178 62-295 278-470 (513)
79 TIGR03102 halo_cynanin halocya 73.0 14 0.00031 31.3 6.6 62 212-292 41-102 (115)
80 MTH00047 COX2 cytochrome c oxi 69.3 74 0.0016 29.7 11.2 75 61-150 117-193 (194)
81 TIGR03094 sulfo_cyanin sulfocy 67.0 52 0.0011 30.1 9.1 102 195-313 75-186 (195)
82 PF01835 A2M_N: MG2 domain; I 64.6 19 0.00041 29.2 5.7 71 216-292 10-85 (99)
83 PF07705 CARDB: CARDB; InterP 63.2 68 0.0015 25.5 8.9 67 216-292 14-83 (101)
84 PF05506 DUF756: Domain of unk 61.4 66 0.0014 25.6 8.2 63 59-130 8-73 (89)
85 MTH00140 COX2 cytochrome c oxi 60.5 1.1E+02 0.0023 29.4 10.8 77 59-150 139-217 (228)
86 COG1622 CyoA Heme/copper-type 59.1 34 0.00073 33.2 7.1 64 212-296 136-199 (247)
87 COG2967 ApaG Uncharacterized p 54.1 16 0.00035 30.7 3.4 55 71-126 33-95 (126)
88 TIGR03079 CH4_NH3mon_ox_B meth 53.6 84 0.0018 32.0 8.9 16 105-120 337-352 (399)
89 PF04151 PPC: Bacterial pre-pe 51.2 75 0.0016 23.8 6.6 66 212-291 4-69 (70)
90 PF10633 NPCBM_assoc: NPCBM-as 50.9 1.1E+02 0.0024 23.4 7.7 67 217-292 1-75 (78)
91 PRK10378 inactive ferrous ion 50.3 53 0.0012 33.9 7.2 63 212-292 43-105 (375)
92 PF05938 Self-incomp_S1: Plant 49.4 58 0.0013 27.0 6.2 69 71-149 2-71 (110)
93 MTH00140 COX2 cytochrome c oxi 46.7 65 0.0014 30.9 6.8 60 214-294 141-200 (228)
94 PRK05461 apaG CO2+/MG2+ efflux 44.5 54 0.0012 28.3 5.3 50 222-274 32-85 (127)
95 COG1188 Ribosome-associated he 44.3 17 0.00038 29.7 2.1 30 50-79 35-64 (100)
96 COG3354 FlaG Putative archaeal 43.1 1.7E+02 0.0036 25.7 7.9 63 221-290 70-140 (154)
97 MTH00047 COX2 cytochrome c oxi 42.5 1.1E+02 0.0024 28.5 7.4 61 214-295 117-177 (194)
98 PF04379 DUF525: Protein of un 41.7 39 0.00085 27.2 3.8 50 222-274 15-68 (90)
99 KOG4063 Major epididymal secre 40.4 2.4E+02 0.0051 25.1 8.5 62 60-121 48-123 (158)
100 PRK05461 apaG CO2+/MG2+ efflux 37.7 39 0.00084 29.2 3.4 16 105-120 73-88 (127)
101 PF14326 DUF4384: Domain of un 37.2 2E+02 0.0043 22.4 8.1 24 217-240 3-26 (83)
102 PF07691 PA14: PA14 domain; I 36.7 2.1E+02 0.0045 24.5 8.1 61 215-280 54-121 (145)
103 MTH00008 COX2 cytochrome c oxi 36.7 1.2E+02 0.0026 29.1 6.9 60 214-294 141-200 (228)
104 PF11142 DUF2917: Protein of u 36.1 95 0.0021 23.1 4.9 32 215-252 2-33 (63)
105 PF11322 DUF3124: Protein of u 35.5 2.9E+02 0.0062 23.8 9.0 65 224-292 28-94 (125)
106 MTH00129 COX2 cytochrome c oxi 35.5 1.1E+02 0.0023 29.4 6.4 60 214-294 141-200 (230)
107 MTH00098 COX2 cytochrome c oxi 35.1 1.3E+02 0.0027 28.9 6.8 60 214-294 141-200 (227)
108 PF10989 DUF2808: Protein of u 34.8 1.1E+02 0.0024 27.0 6.0 32 265-296 99-131 (146)
109 TIGR01433 CyoA cytochrome o ub 33.1 1.4E+02 0.003 28.6 6.7 61 213-294 139-199 (226)
110 PRK13202 ureB urease subunit b 32.9 1.3E+02 0.0027 24.9 5.3 64 61-126 12-88 (104)
111 TIGR01432 QOXA cytochrome aa3 31.9 3.5E+02 0.0077 25.5 9.3 76 60-150 130-207 (217)
112 smart00758 PA14 domain in bact 31.8 2.8E+02 0.006 23.5 8.1 61 215-280 52-113 (136)
113 PF05506 DUF756: Domain of unk 30.7 2.7E+02 0.0058 22.0 10.6 58 221-291 20-77 (89)
114 PF14874 PapD-like: Flagellar- 30.4 2.9E+02 0.0062 22.2 8.8 62 216-289 15-83 (102)
115 TIGR01433 CyoA cytochrome o ub 29.3 5E+02 0.011 24.8 9.8 76 60-150 139-216 (226)
116 MTH00051 COX2 cytochrome c oxi 29.2 1.7E+02 0.0037 28.1 6.7 60 214-294 145-204 (234)
117 MTH00185 COX2 cytochrome c oxi 29.1 2E+02 0.0042 27.7 7.0 61 213-294 140-200 (230)
118 COG3241 Azurin [Energy product 28.8 67 0.0015 27.2 3.2 40 253-292 93-136 (151)
119 cd00918 Der-p2_like Several gr 28.6 2.7E+02 0.0058 23.7 7.0 62 59-121 19-88 (120)
120 PF14451 Ub-Mut7C: Mut7-C ubiq 28.5 52 0.0011 25.9 2.4 27 47-73 48-74 (81)
121 PF11614 FixG_C: IG-like fold 26.9 1.6E+02 0.0034 24.7 5.4 51 221-280 33-85 (118)
122 cd00916 Npc2_like Niemann-Pick 26.6 2.3E+02 0.005 24.1 6.4 62 60-121 22-92 (123)
123 COG4633 Plastocyanin domain co 26.4 3.2E+02 0.0068 26.0 7.4 90 42-152 79-173 (272)
124 MTH00117 COX2 cytochrome c oxi 26.2 2.7E+02 0.0058 26.6 7.4 60 214-294 141-200 (227)
125 TIGR02988 YaaA_near_RecF S4 do 26.1 41 0.00089 24.4 1.4 23 50-72 35-58 (59)
126 TIGR01432 QOXA cytochrome aa3 26.0 1.9E+02 0.0041 27.4 6.4 60 214-294 131-190 (217)
127 PF06775 Seipin: Putative adip 25.7 75 0.0016 29.7 3.5 51 262-312 50-105 (199)
128 MTH00008 COX2 cytochrome c oxi 25.0 2.5E+02 0.0054 26.9 7.0 75 60-149 140-216 (228)
129 PF14344 DUF4397: Domain of un 24.8 4.1E+02 0.0088 22.1 10.8 37 242-278 44-82 (122)
130 PRK13254 cytochrome c-type bio 24.8 1.1E+02 0.0024 27.1 4.1 70 28-102 32-102 (148)
131 PF10989 DUF2808: Protein of u 24.7 79 0.0017 27.9 3.3 29 105-133 96-127 (146)
132 PF14478 DUF4430: Domain of un 24.5 61 0.0013 24.3 2.2 27 47-73 39-68 (68)
133 TIGR00192 urease_beta urease, 23.4 2.4E+02 0.0053 23.1 5.4 59 61-119 12-82 (101)
134 PRK13203 ureB urease subunit b 23.3 2.4E+02 0.0052 23.2 5.4 64 61-126 12-87 (102)
135 PRK07440 hypothetical protein; 22.6 82 0.0018 23.9 2.5 26 48-73 35-64 (70)
136 PF07172 GRP: Glycine rich pro 22.5 48 0.001 27.0 1.3 12 1-13 1-12 (95)
137 MTH00076 COX2 cytochrome c oxi 22.4 2.9E+02 0.0063 26.4 6.9 60 214-294 141-200 (228)
138 PF11587 Prion_bPrPp: Major pr 22.3 86 0.0019 19.4 2.0 23 1-23 1-23 (29)
139 PF04744 Monooxygenase_B: Mono 21.9 2.4E+02 0.0051 29.0 6.2 75 32-120 249-333 (381)
140 PRK09918 putative fimbrial cha 21.7 3.1E+02 0.0067 26.2 6.9 62 212-278 75-136 (230)
141 PF07385 DUF1498: Protein of u 21.6 2.3E+02 0.0049 26.9 5.7 14 260-273 153-166 (225)
142 cd00407 Urease_beta Urease bet 21.3 3E+02 0.0065 22.6 5.5 59 61-119 12-82 (101)
143 PRK10525 cytochrome o ubiquino 21.2 2.3E+02 0.0051 28.6 6.1 61 214-295 152-212 (315)
144 TIGR03396 PC_PLC phospholipase 20.4 3.9E+02 0.0085 30.2 8.2 66 58-132 592-660 (690)
145 PRK05659 sulfur carrier protei 20.4 99 0.0021 22.8 2.6 25 49-73 32-60 (66)
No 1
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=2.8e-100 Score=810.83 Aligned_cols=485 Identities=28% Similarity=0.468 Sum_probs=385.2
Q ss_pred hcccccccCccEEEEEEEEEEEEeecC--eeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCC
Q 009358 19 FPAGLAVASITRHYKFDIKMQNVTRLC--HTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGW 96 (537)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~ 96 (537)
+.+-+.|.+.+++|+|+|++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|.++++++|||||++|..++|
T Consensus 17 ~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w 96 (596)
T PLN00044 17 APAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAW 96 (596)
T ss_pred CCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCcc
Confidence 334445667899999999999999999 456899999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCC-CceeEEeeeeeccC
Q 009358 97 ADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPY-KEVPIIFGEWFNAD 174 (537)
Q Consensus 97 ~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d-~e~~l~l~d~~~~~ 174 (537)
+||+++ |||||+||++|+|+|++++++||||||+|.+.|+ +||+|+|||++++..++|+...+ +|.+|+|+||++.+
T Consensus 97 ~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~ 175 (596)
T PLN00044 97 QDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARD 175 (596)
T ss_pred ccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCC
Confidence 999988 9999999999999999877999999999999999 89999999999876666665434 79999999999988
Q ss_pred hHHHHHHhhcCCCCCCCCCcEEEcCccCCCcccC----CCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEe
Q 009358 175 TEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCS----AKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDV 250 (537)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~----~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~ 250 (537)
..++ ......|..+..++.++|||+....++|+ +...+.++|++||+|||||||++....+.|+|+||+|+|||+
T Consensus 176 ~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~ 254 (596)
T PLN00044 176 HRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEA 254 (596)
T ss_pred HHHH-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEe
Confidence 7664 33444454445679999999965445664 224458999999999999999999999999999999999999
Q ss_pred cCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec-cCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCC
Q 009358 251 DAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY-ATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLP 329 (537)
Q Consensus 251 DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~-~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~ 329 (537)
||.+++|+.+|.|.|++||||||+|++++++ +++|||++... ..+. .++...+.|||+|.++.. .. ..+
T Consensus 255 DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~-~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~~-------~~-~~~ 324 (596)
T PLN00044 255 EGSYTSQQNYTNLDIHVGQSYSFLLTMDQNA-STDYYVVASARFVDAA-VVDKLTGVAILHYSNSQG-------PA-SGP 324 (596)
T ss_pred CCcccCceeeeeEEEcCCceEEEEEECCCCC-CCceEEEEecccccCc-cccCcceeEEEEECCCCC-------CC-CCC
Confidence 9999999999999999999999999999975 24899998642 2332 245567899999987652 00 111
Q ss_pred CCCCCCCC-CCCcccccccccccccccCCCCCCCCCCCcceEEEEEeccCc-CCCCCCCCccCCCCCceeEeeecCeeec
Q 009358 330 LMKPTLPA-LNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGT-NPCPKNQTCQGPNNSTKFAASVNNFSFI 407 (537)
Q Consensus 330 ~~~p~~p~-~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iN~~~~~ 407 (537)
+ |..|. .+++....++...++.+..++.+.+.|...+....+.++... ..+.....| .+++.|+|||++|.
T Consensus 325 -~-P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~s~Nnvsf~ 397 (596)
T PLN00044 325 -L-PDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELI-----DGKLRATLNEISYI 397 (596)
T ss_pred -C-CCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecccccccc-----CCeEEEEECcccCC
Confidence 2 44443 455543333334444333333333334444443334332111 011001112 23678999999999
Q ss_pred CCChhhHHhhhcCCCCccccCCCCCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCC
Q 009358 408 LPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFN 487 (537)
Q Consensus 408 ~p~~pll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~ 487 (537)
.|+.|+|.+++.+.+|.|..+|++.||.. ....++.++.++.|++|||||+|.. ...||||||||+
T Consensus 398 ~p~~p~L~a~~~~~~gv~~~~fp~~pp~~-----------~~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~ 463 (596)
T PLN00044 398 APSTPLMLAQIFNVPGVFKLDFPNHPMNR-----------LPKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYA 463 (596)
T ss_pred CCCCcchhhhhccCCCcccCCCCCCCCcc-----------ccccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCcc
Confidence 99999998888888899998998887741 0124678899999999999999953 468999999999
Q ss_pred eeEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 488 FFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 488 F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
||||++|.|+|++. +...+|+.||++|||+.||++||++|||+|||||+
T Consensus 464 F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~ 512 (596)
T PLN00044 464 FFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGI 512 (596)
T ss_pred EEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEE
Confidence 99999999999965 45679999999999999999999999999999996
No 2
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=3.7e-100 Score=817.48 Aligned_cols=497 Identities=69% Similarity=1.213 Sum_probs=402.7
Q ss_pred CccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCccccc
Q 009358 27 SITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQC 106 (537)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~ 106 (537)
+++|+|+|+|+++.+++||+.|.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++|+||+|++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEeCCCccceEEecchhhhhccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhhcCC
Q 009358 107 PIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTG 186 (537)
Q Consensus 107 ~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g 186 (537)
||+||++|+|+|++++++||||||||.+.+++||+|+|||+++.+.++++...|+|++|+++||++....+++......+
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998669999999999998889999999999987666666667899999999999998887766655555
Q ss_pred CCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEEC
Q 009358 187 AGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLIT 266 (537)
Q Consensus 187 ~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~ 266 (537)
..+.+++++||||+.++.++|+....+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55557799999999888888987777899999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCcccccc
Q 009358 267 PGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTAFAFN 346 (537)
Q Consensus 267 pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~ 346 (537)
+||||||+|++++++ |+||||+....++...+......|||+|+++.. .. .+.. +..|..++......
T Consensus 241 ~GqRydVlv~a~~~~--g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~-------~~--~p~~-~~~~~~~~~~~~~~ 308 (539)
T TIGR03389 241 PGQTTNVLLTADQSP--GRYFMAARPYMDAPGAFDNTTTTAILQYKGTSN-------SA--KPIL-PTLPAYNDTAAATN 308 (539)
T ss_pred CCCEEEEEEECCCCC--ceEEEEEeccccCccCCCCcceEEEEEECCCCC-------CC--CCCC-CCCCCCCchhhhhH
Confidence 999999999999876 999999987654432234467899999987652 10 1111 22222333221111
Q ss_pred cccccccccCCCCCCCCCCCcceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeeecCCChhhHHhhhcCCCCccc
Q 009358 347 YTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYT 426 (537)
Q Consensus 347 ~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~pll~~~~~~~~~~~~ 426 (537)
+...++++..+.++..+|..++.++++++.+....... .++...+ +..+.|+||+++|..|..|+|++.+.++++.+.
T Consensus 309 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~ 386 (539)
T TIGR03389 309 FSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPN-NTCQGPN-GTRFAASMNNISFVMPTTALLQAHYFGISGVFT 386 (539)
T ss_pred HHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcc-cccccCC-CcEEEEEECCcccCCCCcchhhhhhcccCCccc
Confidence 11233444333334444556677776666543221100 0111223 456889999999999999988887776677777
Q ss_pred cCCCCCCcccccCCCCC-CCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEeecCCCCCCCCCCC
Q 009358 427 TDFPSTPLIKFNYTGTP-PNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRK 505 (537)
Q Consensus 427 ~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~ 505 (537)
.+|++.+|++|++++.. +.+...+.+++++.++.|++|||+|+|........||||||||+||||++|.|.|+......
T Consensus 387 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~ 466 (539)
T TIGR03389 387 TDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPA 466 (539)
T ss_pred cCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCcc
Confidence 77888888888766542 11222445788999999999999999964223458999999999999999999998655555
Q ss_pred CCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 506 NFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 506 ~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
.+|+.||++|||++||++||++|||+|||||+
T Consensus 467 ~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~ 498 (539)
T TIGR03389 467 KFNLVDPPERNTVGVPTGGWAAIRFVADNPGV 498 (539)
T ss_pred ccccCCCCeeeeEEcCCCceEEEEEecCCCeE
Confidence 78999999999999999999999999999995
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=7.8e-98 Score=788.19 Aligned_cols=453 Identities=29% Similarity=0.532 Sum_probs=362.1
Q ss_pred cCccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccc
Q 009358 26 ASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQ 105 (537)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq 105 (537)
.+++++|+|+|++..+++||++|.+++|||++|||+|++++||+|+|+|+|.|+++++|||||++|..++||||+++ ||
T Consensus 25 ~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-tQ 103 (543)
T PLN02991 25 EDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-TT 103 (543)
T ss_pred cCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-CC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred cccCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhhc
Q 009358 106 CPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQ 184 (537)
Q Consensus 106 ~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~ 184 (537)
|||+||++|+|+|++++++||||||+|.+.|+ +||+|+|||++++..+.|+..+|+|.+|+|+||++....++... ..
T Consensus 104 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~-~~ 182 (543)
T PLN02991 104 CPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ-LD 182 (543)
T ss_pred CccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH-hh
Confidence 99999999999999866899999999999998 89999999999876666665668899999999999987665433 33
Q ss_pred CCCCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEE
Q 009358 185 TGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILL 264 (537)
Q Consensus 185 ~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~ 264 (537)
.++.+.++|++||||+.. .+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..++++.
T Consensus 183 ~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~ 253 (543)
T PLN02991 183 NGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLD 253 (543)
T ss_pred cCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEE
Confidence 444455789999999953 35799999999999999999999999999999999999999999999999999
Q ss_pred ECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCccc-
Q 009358 265 ITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTAF- 343 (537)
Q Consensus 265 l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~- 343 (537)
|++||||||+|++++++ |+|||++...... ......|||+|+++.. +. +.+ + |..|.......
T Consensus 254 i~~GQRydvlv~a~~~~--~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~-------~~-~~~-~-p~~p~~~~~~~~ 317 (543)
T PLN02991 254 VHVGQSYSVLITADQPA--KDYYIVVSSRFTS----KILITTGVLHYSNSAG-------PV-SGP-I-PDGPIQLSWSFD 317 (543)
T ss_pred EcCCcEEEEEEECCCCC--CcEEEEEeeccCC----CCcceEEEEEeCCCCC-------CC-CCC-C-CCCCcccccccc
Confidence 99999999999999987 9999998863322 2346799999988652 00 001 1 22221111100
Q ss_pred -ccccccccccccCCCCCCCCCCC--------cceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeeecCCChhhH
Q 009358 344 -AFNYTTRLRSLANAQFPANVPQT--------VNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALL 414 (537)
Q Consensus 344 -~~~~~~~l~~l~~~~~p~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~pll 414 (537)
..+....+.+.. +...|.. .+..+.+..++. .+ .+++.|+|||.+|..|+.|+|
T Consensus 318 ~~~~~~~~l~p~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~--------~~-----~g~~~~~iN~~s~~~p~~p~L 380 (543)
T PLN02991 318 QARAIKTNLTASG----PRPNPQGSYHYGKINITRTIRLANSAG--------NI-----EGKQRYAVNSASFYPADTPLK 380 (543)
T ss_pred chhhhhhcccCCC----CCCCCCccccccccccceeEEEeeccc--------cc-----CceEEEEECCCccCCCCCChh
Confidence 001112222211 1122222 122222222111 11 235689999999999999998
Q ss_pred HhhhcCCCCccccC-CCCCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEee
Q 009358 415 QAHFFGQNGVYTTD-FPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQ 493 (537)
Q Consensus 415 ~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~ 493 (537)
.+++.+.+|.|..+ +++.++. + ....+++++.++.|++|||||+|.. ...||||||||+||||++
T Consensus 381 ~~~~~~~~g~~~~~~~~~~~~~-----~------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~ 446 (543)
T PLN02991 381 LADYFKIAGVYNPGSIPDQPTN-----G------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGM 446 (543)
T ss_pred hhhhhcccCccccccccccCCC-----C------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEe
Confidence 88887777888765 5554432 0 0123467889999999999999953 469999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 494 GFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 494 g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
|.|.|+.. +...+|+.||++|||+.||++||++|||+|||||+
T Consensus 447 G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~ 489 (543)
T PLN02991 447 ELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGM 489 (543)
T ss_pred CCCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEE
Confidence 99999875 45679999999999999999999999999999995
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.3e-97 Score=791.70 Aligned_cols=467 Identities=26% Similarity=0.468 Sum_probs=363.3
Q ss_pred cccCccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcc
Q 009358 24 AVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYI 103 (537)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~v 103 (537)
.+.+++++|+|+|++..+++||+.|.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++||||+|+
T Consensus 22 ~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~- 100 (552)
T PLN02354 22 RAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG- 100 (552)
T ss_pred hccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHh
Q 009358 104 TQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQS 182 (537)
Q Consensus 104 tq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~ 182 (537)
|||||+||++|+|+|++.+++||||||||.+.|+ +||+|+|||+++...+.+++..++|++|+++|||+....++.. .
T Consensus 101 TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~ 179 (552)
T PLN02354 101 TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKK-F 179 (552)
T ss_pred CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHH-H
Confidence 9999999999999999767899999999999999 8999999999987666667666789999999999998766543 3
Q ss_pred hcCCCCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecE
Q 009358 183 LQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDI 262 (537)
Q Consensus 183 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~ 262 (537)
...+..+..++++||||+.+..+. ...+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.+++
T Consensus 180 ~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~ 256 (552)
T PLN02354 180 LDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDS 256 (552)
T ss_pred HhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeE
Confidence 334443456799999999653321 23568999999999999999999999999999999999999999999999999
Q ss_pred EEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCC--C
Q 009358 263 LLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN--D 340 (537)
Q Consensus 263 v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~~p~~~--~ 340 (537)
|.|++||||||+|++++++ |+|||++.....+ ......|||+|+++.. .. .+.. |..+... .
T Consensus 257 l~i~~GqRydVlv~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~-------~~--~~~~-p~~~~~~~~~ 320 (552)
T PLN02354 257 LDVHVGQCFSVLVTANQAP--KDYYMVASTRFLK----KVLTTTGIIRYEGGKG-------PA--SPEL-PEAPVGWAWS 320 (552)
T ss_pred EEEccCceEEEEEECCCCC--CcEEEEEeccccC----CCccEEEEEEECCCCC-------CC--CCCC-CCCCcccccc
Confidence 9999999999999999977 9999998743222 2356799999987652 00 1111 2211100 0
Q ss_pred cccccccccccccccCCCCCCCC----CCCcceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeeecCCChhhHHh
Q 009358 341 TAFAFNYTTRLRSLANAQFPANV----PQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQA 416 (537)
Q Consensus 341 ~~~~~~~~~~l~~l~~~~~p~~~----p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~pll~~ 416 (537)
.....+....+.+....+.+... ....+.++.+...+.. + .+...|++||++|..|+.|+|.+
T Consensus 321 ~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~g~~~~~iNn~s~~~p~~P~L~~ 387 (552)
T PLN02354 321 LNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK--------V-----DGKLRYALNGVSHVDPETPLKLA 387 (552)
T ss_pred hhhhhhhhhcccccccCCCCCCccccccccccceEEEeccccc--------C-----CceEEEEECCccCCCCCCChHHh
Confidence 00000011112221111111000 0112333333332111 1 23568999999999999998877
Q ss_pred hhcCCC-CccccC-CCCCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEeec
Q 009358 417 HFFGQN-GVYTTD-FPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQG 494 (537)
Q Consensus 417 ~~~~~~-~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~g 494 (537)
.+.+++ |.++.+ ++..+|..++. .+.+++++.++.|++|||+|+|.. ...||||||||+||||++|
T Consensus 388 ~~~~~~~g~~~~~~~~~~pp~~~~~---------~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G 455 (552)
T PLN02354 388 EYFGVADKVFKYDTIKDNPPAKITK---------IKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVE 455 (552)
T ss_pred hhhcccCCccccCccccCCccccCc---------cccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeec
Confidence 665443 655533 44455532210 234678899999999999999953 5799999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 495 FGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 495 ~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
.|.|+.. +...+|+.||++|||+.||++||++|||+|||||+
T Consensus 456 ~G~~~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGv 497 (552)
T PLN02354 456 PGTWTPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGM 497 (552)
T ss_pred CCCCCcc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeE
Confidence 9999865 34578999999999999999999999999999996
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.8e-97 Score=786.81 Aligned_cols=467 Identities=26% Similarity=0.443 Sum_probs=368.9
Q ss_pred ccCccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCccc
Q 009358 25 VASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYIT 104 (537)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vt 104 (537)
.+.++++|+|+|++..+++||+.+.+++||||+|||+|++++||+|+|+|+|+|+++++|||||++|..++|+||+++ +
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-t 90 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-T 90 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-C
Confidence 455678999999999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred ccccCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhh
Q 009358 105 QCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSL 183 (537)
Q Consensus 105 q~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~ 183 (537)
||||+||++|+|+|++++++||||||||.+.|+ +||+|+|||++++..+.+++.+|+|.+|+|+||++.+...+.. ..
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~-~~ 169 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK-IL 169 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-Hh
Confidence 999999999999999867899999999999998 8999999999865555666667889999999999988766433 33
Q ss_pred cCCCC-CCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecE
Q 009358 184 QTGAG-PNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDI 262 (537)
Q Consensus 184 ~~g~~-~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~ 262 (537)
..+.. +.+++.+||||+... ..+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++
T Consensus 170 ~~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~ 242 (536)
T PLN02792 170 DGGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTS 242 (536)
T ss_pred hccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeE
Confidence 33432 337899999999642 1357999999999999999999999999999999999999999999999999
Q ss_pred EEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCcc
Q 009358 263 LLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTA 342 (537)
Q Consensus 263 v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~ 342 (537)
|.|++||||||+|++++++ |+|||++.+...+ ......|||+|.++.. .. +.. |..|..++..
T Consensus 243 l~i~~GqRydVlV~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~-------~~---~~~-p~~p~~~~~~ 305 (536)
T PLN02792 243 LDIHVGQTYSVLVTMDQPP--QNYSIVVSTRFIA----AKVLVSSTLHYSNSKG-------HK---IIH-ARQPDPDDLE 305 (536)
T ss_pred EEEccCceEEEEEEcCCCC--ceEEEEEEeccCC----CCCceEEEEEECCCCC-------CC---CCC-CCCCCcCCcc
Confidence 9999999999999999976 9999999864322 2356789999987653 10 111 3333344433
Q ss_pred cccccccccccccCCCCCCCCCCCcceEEEEEeccCc-CCCCCCCCccCCCCCceeEeeecCeeecCCChhhHHhhhcCC
Q 009358 343 FAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGT-NPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQ 421 (537)
Q Consensus 343 ~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~pll~~~~~~~ 421 (537)
....+...++.+..++.+..+|+..++...+.++... ..+ ....+ ...+.|+|||++|..|+.|+|.+++.++
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~iN~~s~~~p~~p~L~a~~~~~ 379 (536)
T PLN02792 306 WSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILES-SAALV-----KRKQRYAINGVSFVPSDTPLKLADHFKI 379 (536)
T ss_pred ccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecc-ccccc-----CceeEEEECCcccCCCCCchhhhhhhcc
Confidence 3222222222222222233344332222122211110 000 00111 2356899999999999999988877777
Q ss_pred CCccccC-CCCCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEeecCCCCCC
Q 009358 422 NGVYTTD-FPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDP 500 (537)
Q Consensus 422 ~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~ 500 (537)
+|.|..+ |++.||..++ ...+++++.++.|++|||||+|.. ...||||||||+||||++|.|+|++
T Consensus 380 ~g~~~~~~~~~~p~~~~~----------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~ 446 (536)
T PLN02792 380 KGVFKVGSIPDKPRRGGG----------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSR 446 (536)
T ss_pred CCCcCcccCccCCcccCC----------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCc
Confidence 7877654 7777764211 124578899999999999999953 4689999999999999999999986
Q ss_pred CCCCCCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 501 SKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 501 ~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
. +...+|+.||++||||.||++||++|||+|||||+
T Consensus 447 ~-~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGv 482 (536)
T PLN02792 447 A-SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGM 482 (536)
T ss_pred c-cccccCcCCCCccceEEECCCCEEEEEEEeeCCEE
Confidence 4 45679999999999999999999999999999996
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.1e-96 Score=777.55 Aligned_cols=459 Identities=29% Similarity=0.490 Sum_probs=356.8
Q ss_pred CccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCccccc
Q 009358 27 SITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQC 106 (537)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~ 106 (537)
|++|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|..++||||+|+ |||
T Consensus 24 a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQc 102 (545)
T PLN02168 24 APIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TNC 102 (545)
T ss_pred ccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-CcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ccCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhhcC
Q 009358 107 PIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQT 185 (537)
Q Consensus 107 ~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~ 185 (537)
||+||++|+|+|++++++||||||||.+.|+ +||+|+|||+++++.+.++..+++|+.|+++||++.+...+.. ....
T Consensus 103 pI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~~~ 181 (545)
T PLN02168 103 PILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRA-SLDN 181 (545)
T ss_pred CCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHh-hhhc
Confidence 9999999999999866899999999999998 8999999999987666666667899999999999987655432 2233
Q ss_pred CCCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEE
Q 009358 186 GAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLI 265 (537)
Q Consensus 186 g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l 265 (537)
+....+++.+||||+.. ..+.+++++||+|||||||++....+.|+|+||+|+|||+||.+++|+.+++|.|
T Consensus 182 g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i 253 (545)
T PLN02168 182 GHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDI 253 (545)
T ss_pred CCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEE
Confidence 33344679999999953 1358999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeCCCCCC--ceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCccc
Q 009358 266 TPGQTTNILLKAKPSYPN--ATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTAF 343 (537)
Q Consensus 266 ~pGeR~dv~v~~~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~ 343 (537)
++||||||+|+++++++| ++|||++.....+ ......|||+|+++.. .. ..+ + |..|..++...
T Consensus 254 ~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~-------~~-~~p-~-p~~p~~~~~~~ 319 (545)
T PLN02168 254 HVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPL-------DP-VGP-L-PLAPALHDYFS 319 (545)
T ss_pred cCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCC-------CC-CCC-C-CCCCccccccc
Confidence 999999999999876443 4899999864332 2356789999987653 10 011 1 22333333322
Q ss_pred ccccccccccccCCCCCCCCCCC--------cceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeeecCCChhhHH
Q 009358 344 AFNYTTRLRSLANAQFPANVPQT--------VNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQ 415 (537)
Q Consensus 344 ~~~~~~~l~~l~~~~~p~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~pll~ 415 (537)
..+....++....+..+...|.. .+..+.+...+ . . . .+...|+|||++|..|+.|+|.
T Consensus 320 ~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~------~----~-~g~~~~~iN~~s~~~p~~P~l~ 386 (545)
T PLN02168 320 SVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M------L----S-SGKLRYTINGVSFVYPGTPLKL 386 (545)
T ss_pred ccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c------c----c-CceEEEEECCCccCCCCCchhh
Confidence 21111112111111111122221 12222221110 0 0 1 2357899999999999999876
Q ss_pred hhhcCCCCccccC-CCCCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEeec
Q 009358 416 AHFFGQNGVYTTD-FPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQG 494 (537)
Q Consensus 416 ~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~g 494 (537)
+++.+.++.+..+ ++..||. .....+++++.++.|++|||+|+|.. ...||||||||+||||++|
T Consensus 387 ~~~~~~~~~~~~~~~~~~p~~-----------~~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g 452 (545)
T PLN02168 387 VDHFQLNDTIIPGMFPVYPSN-----------KTPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYG 452 (545)
T ss_pred hhhcccccccccCCCccCCCc-----------CccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECC
Confidence 6655443333322 4444431 00123477899999999999999953 4699999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 495 FGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 495 ~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
.|.|++. +...+|+.||++|||+.||++||++|||+|||||+
T Consensus 453 ~g~~~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~ 494 (545)
T PLN02168 453 FGAWSES-KKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGM 494 (545)
T ss_pred CCCCCcc-ccccCCCCCCCccceEEeCCCCEEEEEEEccCCeE
Confidence 9999864 24568999999999999999999999999999995
No 7
>PLN02835 oxidoreductase
Probab=100.00 E-value=3.6e-95 Score=771.99 Aligned_cols=457 Identities=26% Similarity=0.484 Sum_probs=355.5
Q ss_pred ccCccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCccc
Q 009358 25 VASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYIT 104 (537)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vt 104 (537)
+.|++|+|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||++|..++||||+++ |
T Consensus 25 ~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~-t 103 (539)
T PLN02835 25 GEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-T 103 (539)
T ss_pred ccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-C
Confidence 345889999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhh
Q 009358 105 QCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSL 183 (537)
Q Consensus 105 q~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~ 183 (537)
||||+||++|+|+|++++++||||||||.+.|+ +||+|+|||++++..+.++..+|+|++|+++|||+....++... .
T Consensus 104 Q~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~-~ 182 (539)
T PLN02835 104 NCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR-L 182 (539)
T ss_pred cCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH-h
Confidence 999999999999999767899999999999998 89999999987655555665678999999999999987765433 3
Q ss_pred cCCCCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEE
Q 009358 184 QTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDIL 263 (537)
Q Consensus 184 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v 263 (537)
..|.....++.+||||+.. +.+++++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.++.|
T Consensus 183 ~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l 252 (539)
T PLN02835 183 DSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSL 252 (539)
T ss_pred hcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEE
Confidence 3444455789999999963 468999999999999999999999999999999999999999999999999
Q ss_pred EECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCC---C
Q 009358 264 LITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN---D 340 (537)
Q Consensus 264 ~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~~p~~~---~ 340 (537)
.|++||||||+|++++++ |+|||++.....+ ......|||+|+++.. +. ...+ |..|... +
T Consensus 253 ~i~~GqRydvlv~~~~~~--g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~-~~--------~~~~-p~~p~~~~~~~ 316 (539)
T PLN02835 253 DVHVGQSVAVLVTLNQSP--KDYYIVASTRFTR----QILTATAVLHYSNSRT-PA--------SGPL-PALPSGELHWS 316 (539)
T ss_pred EECcCceEEEEEEcCCCC--CcEEEEEEccccC----CCcceEEEEEECCCCC-CC--------CCCC-CCCCccccccc
Confidence 999999999999999876 9999998642222 2356799999987642 00 0001 2222110 0
Q ss_pred cccccccccccccccCCCCCCC---C-CCCcceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeeecCCChhhHHh
Q 009358 341 TAFAFNYTTRLRSLANAQFPAN---V-PQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQA 416 (537)
Q Consensus 341 ~~~~~~~~~~l~~l~~~~~p~~---~-p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~pll~~ 416 (537)
..........+.+....+.+.. . ....+.++.+...+.. . .+...|++||++|..|+.|+|.+
T Consensus 317 ~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~g~~~w~iN~~s~~~p~~P~L~~ 383 (539)
T PLN02835 317 MRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL------------I-NGKQRYAVNGVSYVNSDTPLKLA 383 (539)
T ss_pred cchhhccccccCccccCCCCCccccccccCCCceEEEeccccc------------c-CCeEEEEECCcccCCCCCChhhh
Confidence 0000000011111111111100 0 0112333333321110 1 23568999999999999998777
Q ss_pred hhcCCCCccccCC-CCCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEeecC
Q 009358 417 HFFGQNGVYTTDF-PSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGF 495 (537)
Q Consensus 417 ~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~ 495 (537)
++.+.++.|+.+. +..++ +...+.+++++.++.|++|||+|+|.. ...||||||||+||||++|.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~ 449 (539)
T PLN02835 384 DYFGIPGVFSVNSIQSLPS-----------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGS 449 (539)
T ss_pred hhhcCCCccccCccccCCC-----------CCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccC
Confidence 6665556665331 11111 111345688999999999999999954 47899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 496 GNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 496 G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
|.|+.. ....+|+.||++|||++||++||++|||+|||||+
T Consensus 450 g~~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~ 490 (539)
T PLN02835 450 GQWTPA-KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGM 490 (539)
T ss_pred CCCCcc-cccccCCCCCCccceEEeCCCCEEEEEEECcCCEE
Confidence 999754 34467999999999999999999999999999995
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-95 Score=764.55 Aligned_cols=492 Identities=49% Similarity=0.836 Sum_probs=426.3
Q ss_pred cccccccCccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCC
Q 009358 20 PAGLAVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADG 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG 99 (537)
.....+.++.+.|+|++++..+.++|.++.+++|||++|||+|+|++||+|+|+|.|.++++++|||||++|..++|+||
T Consensus 19 ~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG 98 (563)
T KOG1263|consen 19 VFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG 98 (563)
T ss_pred HHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeecc-ChHH
Q 009358 100 PAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNA-DTEA 177 (537)
Q Consensus 100 v~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~-~~~~ 177 (537)
+.+|||||+||++|+|+|+++++.||||||+|.+.++ +|++|+|||.++...++|++.+|+|++|+++|||+. ....
T Consensus 99 -~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~ 177 (563)
T KOG1263|consen 99 -VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKN 177 (563)
T ss_pred -CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHH
Confidence 8999999999999999999988999999999999999 799999999999887888888999999999999995 7777
Q ss_pred HHHHhhcCCCCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCc
Q 009358 178 IINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS 257 (537)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P 257 (537)
+.......+..+..+|..+|||+.+..++| .+.+++++||+|||||+|+|....+.|+|+||+|+||++||.+++|
T Consensus 178 l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p 253 (563)
T KOG1263|consen 178 LKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKP 253 (563)
T ss_pred HHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEee
Confidence 766666666656568999999999888888 5799999999999999999999999999999999999999999999
Q ss_pred eEecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCC
Q 009358 258 FQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPA 337 (537)
Q Consensus 258 ~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~~p~ 337 (537)
..+++|.|.||||++|+|++++.+ ++|+|.+..+.++.....+....|+|+|.++.. +. +. +.+.. +.+|.
T Consensus 254 ~~~~~l~i~~GQ~~~vLvtadq~~--~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~-~~----s~-~~~~~-~~~~~ 324 (563)
T KOG1263|consen 254 FTTDSLDIHPGQTYSVLLTADQSP--GDYYIAASPYFDASNVPFNLTTTGILRYSGSTH-PA----SE-KLPIY-PFLPP 324 (563)
T ss_pred eeeceEEEcCCcEEEEEEeCCCCC--CcEEEEEEeeeccCCcceeeeEEEEEEEeCCcc-cC----cc-cCccc-ccCCc
Confidence 999999999999999999999998 799999998766532222678999999998442 11 11 11222 34555
Q ss_pred CCCcccccccccccccccCCCCCCCCCCCcceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeeecCCChh-hHHh
Q 009358 338 LNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTA-LLQA 416 (537)
Q Consensus 338 ~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~p-ll~~ 416 (537)
.++......+...++.+....++.+.|+.+++.+..+++.+...+.... .+ +++..++||+.+|+.|+.| +|.+
T Consensus 325 ~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~-~~~~~~siN~isf~~P~tp~~l~~ 399 (563)
T KOG1263|consen 325 GNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KN-NGKLRASINNISFVTPKTPSLLAA 399 (563)
T ss_pred ccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CC-CcEEEEEEcceEEECCCCchhhhh
Confidence 5666666666677788777777778888888887777776655443221 23 5678899999999999886 6777
Q ss_pred hhcCCCCccccCCCCCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEeecCC
Q 009358 417 HFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFG 496 (537)
Q Consensus 417 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G 496 (537)
++...++.+..++++.|+..|++++ .+.|++++.+++|+.||||++|.+......||||||||+|||||.|.|
T Consensus 400 ~~~~~~~~~~~d~p~~P~~~~~~~~-------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G 472 (563)
T KOG1263|consen 400 YFKNIPGYFTNDFPDKPPIKFDYTG-------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFG 472 (563)
T ss_pred hhccCCccccCccCCCCccccCCcc-------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEeccc
Confidence 7777778888899999988787665 357899999999999999999987766788999999999999999999
Q ss_pred CCCCCCCC-CCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 497 NYDPSKDR-KNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 497 ~~~~~~~~-~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
+|++..+. ..+|+.+|+.||||.||++||++|||+|||||+
T Consensus 473 ~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~ 514 (563)
T KOG1263|consen 473 NWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGV 514 (563)
T ss_pred ccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcE
Confidence 99995555 789999999999999999999999999999996
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=5.6e-92 Score=753.81 Aligned_cols=495 Identities=28% Similarity=0.507 Sum_probs=365.2
Q ss_pred hhHHHHHHHHHHHhcccccccCccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCC-CCcee
Q 009358 6 LPSSLAILCVWFLFPAGLAVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISI 84 (537)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~-~~~si 84 (537)
|--++++-++++|-..+ .+++|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|.|+ ++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsi 79 (574)
T PLN02191 3 MIVWWIVTVVAVLTHTA---SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVI 79 (574)
T ss_pred EeehhHHHHHHHHHHhh---ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccE
Confidence 44466666666664333 257899999999999999999999999999999999999999999999999997 78999
Q ss_pred EecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCce
Q 009358 85 HWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEV 163 (537)
Q Consensus 85 H~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~ 163 (537)
||||+++..++|+||+|++|||||+||++|+|+|++ +++||||||||.+.|+ +||+|+|||+++.+...++ .+|+|+
T Consensus 80 HwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~ 157 (574)
T PLN02191 80 HWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEF 157 (574)
T ss_pred ECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeE
Confidence 999999999999999999999999999999999998 7999999999999998 8999999999765433333 358999
Q ss_pred eEEeeeeeccChHHHHHHhhcCC-CCCCCCCcEEEcCccCCCcccCC--------------------CCcceEEEeCCcE
Q 009358 164 PIIFGEWFNADTEAIINQSLQTG-AGPNVSDAYTINGLPGPLYNCSA--------------------KDTFKLKVKPGKT 222 (537)
Q Consensus 164 ~l~l~d~~~~~~~~~~~~~~~~g-~~~~~~~~~liNG~~~~~~~~~~--------------------~~~~~~~v~~G~~ 222 (537)
+|+++|||+....+......... ....+++++||||+.. +.|.. .....++|++||+
T Consensus 158 ~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~ 235 (574)
T PLN02191 158 NLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKT 235 (574)
T ss_pred EEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCE
Confidence 99999999986543322211111 1124578999999853 34421 1233699999999
Q ss_pred EEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCC
Q 009358 223 YLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDN 302 (537)
Q Consensus 223 ~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~ 302 (537)
|||||||+|+...+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|++++++ +++||||+.....+. ..
T Consensus 236 yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~-~~~y~ira~~~~~~~---~~ 311 (574)
T PLN02191 236 YRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDP-SQNYYISVGVRGRKP---NT 311 (574)
T ss_pred EEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCC-CCCEEEEEEccccCC---CC
Confidence 99999999999999999999999999999999999999999999999999999999874 268999997644332 12
Q ss_pred cceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCC-CCcceEEEEEeccCcCC
Q 009358 303 STVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTAFAFNYTTRLRSLANAQFPANVP-QTVNKRFFFTVGLGTNP 381 (537)
Q Consensus 303 ~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p-~~~d~~~~~~~~~~~~~ 381 (537)
....|||+|.+... +..+.... |..|.+.+........ ...+.....+ .+| ...+..+.+.... .
T Consensus 312 ~~~~ail~Y~~~~~-------~~~p~~~~-~~~p~~~~~~~~~~~~--~~~~~~~~~~-~~p~~~~~~~~~~~~~~--~- 377 (574)
T PLN02191 312 TQALTILNYVTAPA-------SKLPSSPP-PVTPRWDDFERSKNFS--KKIFSAMGSP-SPPKKYRKRLILLNTQN--L- 377 (574)
T ss_pred CCceEEEEECCCCC-------CCCCCCCC-CCCCcccccchhhccc--ccccccccCC-CCCCcccceEEEecccc--e-
Confidence 24569999987653 10000000 1222232221111111 1111111011 122 2234444443211 0
Q ss_pred CCCCCCccCCCCCceeEeeecCeeecCCChhhHHhhhcCCCCccccCCCCCC-cccccCCCCCCCCCcccCCceEEEeeC
Q 009358 382 CPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTP-LIKFNYTGTPPNNTSVMNGTKVVVLPF 460 (537)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~pll~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~v~~ 460 (537)
. .+...|++|+++|..|..|+|.+.+.+.++.+..+++... +..|+..+... ....+.+++++.++.
T Consensus 378 ----------~-~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~ 445 (574)
T PLN02191 378 ----------I-DGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPP-FPNTTTGNGIYVFPF 445 (574)
T ss_pred ----------e-CCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCc-cccccccceeEEecC
Confidence 1 2345799999999989888877766555555544433221 11222111100 001234678899999
Q ss_pred CCEEEEEEeeCCCC---CCCCCCccccCCCeeEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 461 NASVELVMQDTSTL---GAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 461 g~~veivi~N~~~~---~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
|++|||+|+|.... ....||||||||+||||++|.|.|+++.+...+|+.||++|||++||++||++|||+|||||+
T Consensus 446 ~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~ 525 (574)
T PLN02191 446 NVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGV 525 (574)
T ss_pred CCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEE
Confidence 99999999996311 257899999999999999999999875555578999999999999999999999999999995
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=8.1e-91 Score=746.69 Aligned_cols=495 Identities=32% Similarity=0.554 Sum_probs=370.4
Q ss_pred HHHHHHHHHHhcccccccCccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecC-CCCceeEec
Q 009358 9 SLAILCVWFLFPAGLAVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHV-PNNISIHWH 87 (537)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l-~~~~siH~H 87 (537)
+|++++++++-.+...+.+++|+|+|+|++..+++||+.|.+|+|||++|||+|++++||+|+|+|+|.+ .++++||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~H 83 (566)
T PLN02604 4 FLALFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWH 83 (566)
T ss_pred hhhHHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeC
Confidence 4444444444444555667899999999999999999999999999999999999999999999999998 589999999
Q ss_pred CccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEE
Q 009358 88 GIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPII 166 (537)
Q Consensus 88 G~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~ 166 (537)
|+++.+++|+||+++++||+|+||++++|+|++ +++||||||||...|+ +||+|+|||+++.+...++ .+|+|.+|+
T Consensus 84 G~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~ 161 (566)
T PLN02604 84 GIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSII 161 (566)
T ss_pred CCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEE
Confidence 999999999999999999999999999999998 8999999999999998 8999999999886544555 358899999
Q ss_pred eeeeeccChHHHHHHhhcCC-CCCCCCCcEEEcCccCCCcccCC-----------------CCcceEEEeCCcEEEEEEE
Q 009358 167 FGEWFNADTEAIINQSLQTG-AGPNVSDAYTINGLPGPLYNCSA-----------------KDTFKLKVKPGKTYLLRLI 228 (537)
Q Consensus 167 l~d~~~~~~~~~~~~~~~~g-~~~~~~~~~liNG~~~~~~~~~~-----------------~~~~~~~v~~G~~~rlRli 228 (537)
|+||++....+......... ....++++.+|||+.. ++|+. ...+.+++++|++||||||
T Consensus 162 l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlI 239 (566)
T PLN02604 162 LTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRIS 239 (566)
T ss_pred eeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEE
Confidence 99999988766544322111 1123679999999853 34431 1345789999999999999
Q ss_pred ecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEE
Q 009358 229 NAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGI 308 (537)
Q Consensus 229 N~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ai 308 (537)
|+++...+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++++ +++||||+.....+. +...+.||
T Consensus 240 Na~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~-~~~y~ira~~~~~~~---~~~~~~aI 315 (566)
T PLN02604 240 SLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDP-SRNYWVTTSVVSRNN---TTPPGLAI 315 (566)
T ss_pred eccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCC-CCCEEEEEecccCCC---CCcceeEE
Confidence 99999999999999999999999999999999999999999999999999865 358999987644331 23577999
Q ss_pred EEEecCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCcceEEEEEeccCcCCCCCCCCc
Q 009358 309 LEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTC 388 (537)
Q Consensus 309 l~Y~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~ 388 (537)
|+|++... .. ..+...|..+.+++..........+..+. ..+...+...++++.+....+.
T Consensus 316 L~Y~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~--------- 376 (566)
T PLN02604 316 FNYYPNHP-------RR-SPPTVPPSGPLWNDVEPRLNQSLAIKARH--GYIHPPPLTSDRVIVLLNTQNE--------- 376 (566)
T ss_pred EEECCCCC-------CC-CCCCCCCCCCcccccchhhcchhcccccc--cCcCCCCCCCCeEEEEeccccc---------
Confidence 99986431 00 01111011122222111100011111111 1111223445666655332211
Q ss_pred cCCCCCceeEeeecCeeecCCChhhHHhhhcCCCCccccCCCCCCcccccC---CCC-CCCCCcccCCceEEEeeCCCEE
Q 009358 389 QGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNY---TGT-PPNNTSVMNGTKVVVLPFNASV 464 (537)
Q Consensus 389 ~~~~~~~~~~~~iN~~~~~~p~~pll~~~~~~~~~~~~~~~~~~~p~~~~~---~~~-~~~~~~~~~~~~~~~v~~g~~v 464 (537)
. ++.+.|++|+.+|..|..|+|.+.+...++.|+.+. ++..++. +.. ...+...+.+++++.++.|++|
T Consensus 377 ---~-~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V 449 (566)
T PLN02604 377 ---V-NGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTV 449 (566)
T ss_pred ---c-CCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeE
Confidence 1 235689999999998888887776665555554221 1111110 000 0011113446788999999999
Q ss_pred EEEEeeCCCC---CCCCCCccccCCCeeEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 465 ELVMQDTSTL---GAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 465 eivi~N~~~~---~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
||+|+|.... ....||||||||+||||++|.|.|++.++...+|+.||++|||++||++||++|||+|||||+
T Consensus 450 divi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~ 525 (566)
T PLN02604 450 DIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGV 525 (566)
T ss_pred EEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeE
Confidence 9999996421 356899999999999999999999877666789999999999999999999999999999995
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=9.2e-90 Score=736.63 Aligned_cols=476 Identities=31% Similarity=0.554 Sum_probs=357.9
Q ss_pred cEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCCcccccc
Q 009358 29 TRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAYITQCP 107 (537)
Q Consensus 29 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~vtq~~ 107 (537)
+|+|+|+|++..+++||+.|.+++|||++|||+|++++||+|+|+|+|.+. ++++|||||+++.+++||||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999985 8999999999999999999999999999
Q ss_pred cCCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhhcCC
Q 009358 108 IQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTG 186 (537)
Q Consensus 108 i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g 186 (537)
|+||++|+|+|++ +++||||||||.+.|+ +||+|+|||+++.+...++ .+|+|++|+|+||++....+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7999999999999998 8999999999886544444 35899999999999988765433222111
Q ss_pred -CCCCCCCcEEEcCccCCCcccCCC-------------------CcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEE
Q 009358 187 -AGPNVSDAYTINGLPGPLYNCSAK-------------------DTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVT 246 (537)
Q Consensus 187 -~~~~~~~~~liNG~~~~~~~~~~~-------------------~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 246 (537)
....+++++||||+.. ++|... ....++|++|++|||||||++....+.|+||||+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113568999999853 334211 234589999999999999999999999999999999
Q ss_pred EEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccC
Q 009358 247 VVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIK 326 (537)
Q Consensus 247 via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~ 326 (537)
|||+||.+++|+.++.|.|++||||||+|++++.+ +++||||+.....+. ......|||+|+++.. +..
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~-~~~y~ira~~~~~~~---~~~~~~aiL~Y~~~~~-------~~~ 305 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDP-SRNYWISVGVRGRKP---NTPPGLTVLNYYPNSP-------SRL 305 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCC-CCcEEEEEecccCCC---CCccEEEEEEECCCCC-------CCC
Confidence 99999999999999999999999999999998864 369999988644321 2346789999987542 100
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCcceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeee
Q 009358 327 KLPLMKPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSF 406 (537)
Q Consensus 327 ~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~ 406 (537)
++...|..|.+.+....... .+..+..... ..+|..++.++.+...... . .....|++|+.+|
T Consensus 306 -p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~n~~s~ 368 (541)
T TIGR03388 306 -PPTPPPVTPAWDDFDRSKAF--SLAIKAAMGS-PKPPETSDRRIVLLNTQNK------------I-NGYTKWAINNVSL 368 (541)
T ss_pred -CCCCCCCCCCccccchhhcc--chhhhccccC-CCCCCCCCcEEEEeccCcc------------c-CceEEEEECcccC
Confidence 00000223333332111111 1111111111 1234455666655332111 0 2345799999999
Q ss_pred cCCChhhHHhhhcCCCCccccCC-CCCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCC---CCCCCCcc
Q 009358 407 ILPSTALLQAHFFGQNGVYTTDF-PSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTL---GAESHPLH 482 (537)
Q Consensus 407 ~~p~~pll~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~---~~~~HP~H 482 (537)
..|..|+|.+.+.+..+.+..+. +...+..|+.... +.+...+.|++++.++.|++|||||+|.... ....||||
T Consensus 369 ~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~H 447 (541)
T TIGR03388 369 TLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKP-PPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWH 447 (541)
T ss_pred CCCCccHHHHHhhcCCccccCCCCcccccccccccCC-CcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEE
Confidence 98988887766554433332221 0111112211110 0111235578899999999999999996421 24689999
Q ss_pred ccCCCeeEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEecCCCC
Q 009358 483 LHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 483 LHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG~ 537 (537)
||||+||||++|.|.|+++.+...+|++||++|||++||++||++|||+|||||+
T Consensus 448 LHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~ 502 (541)
T TIGR03388 448 LHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGV 502 (541)
T ss_pred ecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeE
Confidence 9999999999999999876555679999999999999999999999999999995
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=3e-88 Score=722.69 Aligned_cols=466 Identities=27% Similarity=0.454 Sum_probs=351.3
Q ss_pred EEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCCccccccc
Q 009358 30 RHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAYITQCPI 108 (537)
Q Consensus 30 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~vtq~~i 108 (537)
-.|+|+|++..+++||+.|.+++|||++|||+|++++||+|+|+|+|.|+ ++++|||||++|..++||||+|++|||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 35999999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEeC-CCccceEEecchhhhhccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhhcCCC
Q 009358 109 QTGQSYVYNFTIS-GQRGTLFWHAHISWLRATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGA 187 (537)
Q Consensus 109 ~PG~~~~y~f~~~-~~~Gt~wYH~h~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~ 187 (537)
+||++|+|+|+++ +++||||||||.+.|+.||+|+|||+++.+.++. +|+|++|+|+||++....++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~~---~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPYK---YDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCCC---ccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999974 5899999999999999889999999987644333 48899999999999988776543332211
Q ss_pred -CCCCCCcEEEcCccCCCcccC-------CCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCe-EEEEEecCCCcCce
Q 009358 188 -GPNVSDAYTINGLPGPLYNCS-------AKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHS-VTVVDVDAIYIKSF 258 (537)
Q Consensus 188 -~~~~~~~~liNG~~~~~~~~~-------~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~v~P~ 258 (537)
...+++++||||+..... |. ....+.++|++||+|||||||+|....+.|+|+||+ |+|||+||.+++|+
T Consensus 166 ~~~~~~d~~liNG~~~~~~-~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKS-FYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred ccCCCCceEEECCcccccc-ccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 123568999999964331 10 113578999999999999999999999999999999 99999999999999
Q ss_pred EecEEEECCcceEEEEEEeCCCCC-----CceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCC
Q 009358 259 QTDILLITPGQTTNILLKAKPSYP-----NATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKP 333 (537)
Q Consensus 259 ~~d~v~l~pGeR~dv~v~~~~~~~-----~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p 333 (537)
.++.+.|++||||||+|+++++.+ .++||||+.....+ +.....|||+|.++.. +. .+.. |
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~-------~~--~~~~-p 310 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKA-------SK--LPSV-P 310 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCC-------CC--CCCC-C
Confidence 999999999999999999998631 28999998764432 2246799999986542 11 1101 1
Q ss_pred CCCCCC--CcccccccccccccccCCCCCC-CCCCCcceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeeecC--
Q 009358 334 TLPALN--DTAFAFNYTTRLRSLANAQFPA-NVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFIL-- 408 (537)
Q Consensus 334 ~~p~~~--~~~~~~~~~~~l~~l~~~~~p~-~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~-- 408 (537)
..+... ..+ .......+.++.....+. +.+..+++++.+.+++.... . ++.+.|++||++|..
T Consensus 311 ~~~~~~~~~~~-~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----------~-~g~~~~~~N~~s~~~~~ 378 (538)
T TIGR03390 311 ETPPLPLPNST-YDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----------L-NGRVAWLQNGLSWTESV 378 (538)
T ss_pred CCCCCCccCcc-hhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc----------c-CCeEEEEECCcccCCCC
Confidence 111110 111 000111333432211110 12345677777766543210 1 235689999999986
Q ss_pred CChhhHHhhhcCCCCccccCCCCCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCC-----CCCCCCccc
Q 009358 409 PSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTL-----GAESHPLHL 483 (537)
Q Consensus 409 p~~pll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~-----~~~~HP~HL 483 (537)
|+.|+|...+.+. . +..++ |+... .......+++++.++.|++|||+|+|.... ....|||||
T Consensus 379 ~~~P~L~~~~~~~---~----~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~Hl 446 (538)
T TIGR03390 379 RQTPYLVDIYENG---L----PATPN--YTAAL---ANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHA 446 (538)
T ss_pred CCCchHHHHhcCC---C----CcCCC--ccccc---ccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeee
Confidence 6778776554321 0 01110 11000 000122356788999999999999995311 257899999
Q ss_pred cCCCeeEEeecCCCCCCCCCCCCCCCCCCCccceEEeC----------CCCEEEEEEEecCCCC
Q 009358 484 HGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVP----------SGGWVAIRFRADNPGD 537 (537)
Q Consensus 484 HGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp----------~~g~~viRf~adNPG~ 537 (537)
|||+||||++|.|.|++..+...+|+.||++|||++|| ++||++|||+|||||+
T Consensus 447 HGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~ 510 (538)
T TIGR03390 447 HGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGV 510 (538)
T ss_pred cCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCee
Confidence 99999999999999987654556888999999999996 7899999999999995
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=6.1e-70 Score=580.79 Aligned_cols=263 Identities=28% Similarity=0.506 Sum_probs=223.6
Q ss_pred cEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCccccccc
Q 009358 29 TRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPI 108 (537)
Q Consensus 29 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i 108 (537)
-++|+|++++..++++|..+.+|+|||++|||+|++++||+|+|+|+|.++++++|||||+++.. .+||+|+++||+|
T Consensus 45 ~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~--~~DGvP~vt~~~I 122 (587)
T TIGR01480 45 GTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPF--QMDGVPGVSFAGI 122 (587)
T ss_pred CceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCc--cccCCCccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999864 4999999999999
Q ss_pred CCCCeEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhh----
Q 009358 109 QTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSL---- 183 (537)
Q Consensus 109 ~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~---- 183 (537)
+||++|+|+|++ .++||||||||.+.|+ .||+|+|||+++++.+. .+|+|++|+|+||++.+..+++....
T Consensus 123 ~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~ 198 (587)
T TIGR01480 123 APGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAG 198 (587)
T ss_pred CCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhcccc
Confidence 999999999998 7899999999999888 89999999998754444 34899999999999877665543211
Q ss_pred -----------------cCCCC---------------C-------CCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEE
Q 009358 184 -----------------QTGAG---------------P-------NVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYL 224 (537)
Q Consensus 184 -----------------~~g~~---------------~-------~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~r 224 (537)
..|.. + .....+||||+.. ...+++.+++|++||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvR 271 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVR 271 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEE
Confidence 00100 0 0012378999852 134578999999999
Q ss_pred EEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcc
Q 009358 225 LRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNST 304 (537)
Q Consensus 225 lRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~ 304 (537)
|||||+|+...+.|+|+||+|+||++||.+++|+.++++.|++||||||+|++++. |.|+|++...... ..
T Consensus 272 LR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~~---g~~~i~a~~~~~~------~~ 342 (587)
T TIGR01480 272 LRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTGD---DAFTIFAQDSDRT------GY 342 (587)
T ss_pred EEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCCC---ceEEEEEEecCCC------ce
Confidence 99999999999999999999999999999999999999999999999999998754 8999998764321 35
Q ss_pred eEEEEEEec
Q 009358 305 VAGILEYEA 313 (537)
Q Consensus 305 ~~ail~Y~~ 313 (537)
..++|++.+
T Consensus 343 ~~~~l~~~~ 351 (587)
T TIGR01480 343 ARGTLAVRL 351 (587)
T ss_pred EEEEEecCC
Confidence 577787754
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.3e-62 Score=520.92 Aligned_cols=246 Identities=21% Similarity=0.305 Sum_probs=204.2
Q ss_pred cEEEEEEEEEEEEeecCeee-EEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccc
Q 009358 29 TRHYKFDIKMQNVTRLCHTK-SIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCP 107 (537)
Q Consensus 29 ~~~~~l~~~~~~~~~~g~~~-~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~ 107 (537)
...|+|++++...+.+|..+ .+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++.+. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 34699999999999976554 6999999999999999999999999999999999999999999875 99986 899
Q ss_pred cCCCCeEEEEEEeCCCccceEEecch----hhhh-ccceeeEEEcCCCCCCCCCCC--CCCceeEEeeeeeccChHHHHH
Q 009358 108 IQTGQSYVYNFTISGQRGTLFWHAHI----SWLR-ATVYGPLVIFPKRGVPYPFPK--PYKEVPIIFGEWFNADTEAIIN 180 (537)
Q Consensus 108 i~PG~~~~y~f~~~~~~Gt~wYH~h~----~~~~-~Gl~G~liV~~~~~~~~~~~~--~d~e~~l~l~d~~~~~~~~~~~ 180 (537)
|+||++|+|+|++++++||||||+|. ..|. +||+|+|||+++.+...+++. ...|++|+++||+.....++..
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 99999999999985568999999997 4455 899999999998764433332 2458999999998866544321
Q ss_pred Hhh-cCCCCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEE-cCCeEEEEEecCCCc-Cc
Q 009358 181 QSL-QTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSI-ANHSVTVVDVDAIYI-KS 257 (537)
Q Consensus 181 ~~~-~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~P 257 (537)
... ........++.++|||+.+| .+.+ ++++|||||||+|..+.+.|++ ++|+|+|||.||.++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~p----------~~~v-~~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIYP----------QHAA-PRGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCcccc----------eeec-CCCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 100 00111235689999999653 4566 4679999999999999999998 899999999999987 89
Q ss_pred eEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 258 FQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 258 ~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
+.+++|.|+|||||||+|++++. +.|.+.....
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~~~---~~~~l~~~~~ 301 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTSDG---KAFDLVTLPV 301 (523)
T ss_pred cEeCeEEECccceEEEEEEcCCC---ceEEEEEecc
Confidence 99999999999999999999874 7888887643
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=3.4e-60 Score=498.51 Aligned_cols=239 Identities=18% Similarity=0.286 Sum_probs=198.9
Q ss_pred EEEEEEEEEEEeecC-eeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccC
Q 009358 31 HYKFDIKMQNVTRLC-HTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQ 109 (537)
Q Consensus 31 ~~~l~~~~~~~~~~g-~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~ 109 (537)
.|+|+++......+| ....+|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++... .+||++ ++|+
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 489999999988884 5778999999999999999999999999999999999999999998876 477764 7899
Q ss_pred CCCeEEEEEEeCCCccceEEecchhh----hh-ccceeeEEEcCCCCCCCCCCC--CCCceeEEeeeeeccChHHHHHHh
Q 009358 110 TGQSYVYNFTISGQRGTLFWHAHISW----LR-ATVYGPLVIFPKRGVPYPFPK--PYKEVPIIFGEWFNADTEAIINQS 182 (537)
Q Consensus 110 PG~~~~y~f~~~~~~Gt~wYH~h~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~d~e~~l~l~d~~~~~~~~~~~~~ 182 (537)
||++|+|+|++.+++||||||+|.++ |. +||+|+|||+++.+.+.+++. ...|++|+++||+.+........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 99999999998667999999999765 44 899999999998654434332 23489999999987654432110
Q ss_pred hcCCCCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEE-cCCeEEEEEecCCCc-CceEe
Q 009358 183 LQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSI-ANHSVTVVDVDAIYI-KSFQT 260 (537)
Q Consensus 183 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~P~~~ 260 (537)
........++.++|||+.+ +.++|++| +|||||||+|..+.+.|+| ++|+|+|||.||.++ +|+.+
T Consensus 201 -~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 1111123568999999964 36889875 7999999999999999999 899999999998776 89999
Q ss_pred cEEEECCcceEEEEEEeCCCCCCceEEEEE
Q 009358 261 DILLITPGQTTNILLKAKPSYPNATFLMSA 290 (537)
Q Consensus 261 d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~ 290 (537)
+++.|+|||||||+|++++. +.+.+++
T Consensus 269 ~~l~l~pGeR~dvlVd~~~~---~~~~l~~ 295 (471)
T PRK10883 269 KQLSLAPGERREILVDMSNG---DEVSITA 295 (471)
T ss_pred CeEEECCCCeEEEEEECCCC---ceEEEEC
Confidence 99999999999999999763 6777765
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-49 Score=419.05 Aligned_cols=378 Identities=23% Similarity=0.369 Sum_probs=266.9
Q ss_pred eecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeC
Q 009358 42 TRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTIS 121 (537)
Q Consensus 42 ~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~ 121 (537)
..++.....+.+||++|||+|++++||+|+|+++|.+.+.|+|||||+.... .+||++..+|+++.||++++|.|..
T Consensus 46 ~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~--~~dG~~~~~~~~~~~~~~~~y~f~~- 122 (451)
T COG2132 46 FAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPG--EMDGVPPLTQIPPGPGETPTYTFTQ- 122 (451)
T ss_pred eecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCc--cccCCCcccccCCCCCCcEEEeecC-
Confidence 3457778899999999999999999999999999999877999999988774 4999999999999999999999997
Q ss_pred CCccceEEecchhhhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhhcCCCCCCCCCcEEEcCc
Q 009358 122 GQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGL 200 (537)
Q Consensus 122 ~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~ 200 (537)
+.+||||||+|.++|. +||+|++||++..+.+. ..|.+.++++.+|+.......... .........+..+|||+
T Consensus 123 ~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~ 197 (451)
T COG2132 123 DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGA 197 (451)
T ss_pred CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCC
Confidence 6778999999999998 99999999999976554 347888899999987665544332 12112345689999997
Q ss_pred cCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCC
Q 009358 201 PGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPS 280 (537)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~ 280 (537)
.. .+...++++|||||+|++....+.+++.+++|+||++||.+++|..+|.+.|+|||||||++++++.
T Consensus 198 ~~-----------p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~~ 266 (451)
T COG2132 198 IL-----------PFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMNDG 266 (451)
T ss_pred cc-----------ceeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCCC
Confidence 54 3455566679999999997787778888999999999999998899999999999999999999884
Q ss_pred CCCceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCC--CCCCCCcccccccccccccccCCC
Q 009358 281 YPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPT--LPALNDTAFAFNYTTRLRSLANAQ 358 (537)
Q Consensus 281 ~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~--~p~~~~~~~~~~~~~~l~~l~~~~ 358 (537)
+.+.+.|.. .... ....+.... .....+ +.+...+. .+...... ......+...
T Consensus 267 ---~~~~l~~~~-~~~~-----~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~d~~~--~~~~~~~~~~---- 322 (451)
T COG2132 267 ---GAVTLTALG-EDMP-----DTLKGFRAP-NPILTP--------SYPVLNGRVGAPTGDMAD--HAPVGLLVTI---- 322 (451)
T ss_pred ---CeEEEEecc-ccCC-----ceeeeeecc-cccccc--------ccccccccccCCCcchhh--ccccccchhh----
Confidence 889998875 1111 111111111 110000 00000000 00000000 0000000000
Q ss_pred CCCCCCC-CcceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeeecCCChhhHHhhhcCCCCccccCCCCCCcccc
Q 009358 359 FPANVPQ-TVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKF 437 (537)
Q Consensus 359 ~p~~~p~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~pll~~~~~~~~~~~~~~~~~~~p~~~ 437 (537)
.. .+. ..+....+.. . .....|.+|++.|-
T Consensus 323 ~~--~~~~~~~~~~~l~~----------------~-~~~~~~~~n~~~~~------------------------------ 353 (451)
T COG2132 323 LV--EPGPNRDTDFHLIG----------------G-IGGYVWAINGKAFD------------------------------ 353 (451)
T ss_pred cC--CCcccccccchhhc----------------c-cccccccccCccCC------------------------------
Confidence 00 000 0001000000 0 11223555555431
Q ss_pred cCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEeecCCCCCCCCCCCCCCCCCCCccce
Q 009358 438 NYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNT 517 (537)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDT 517 (537)
.....+.++.|++++|+|.|.+ .+.|||||||+.|+|++.+ .......+.||||
T Consensus 354 -------------~~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDT 407 (451)
T COG2132 354 -------------DNRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDT 407 (451)
T ss_pred -------------CCcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCcccccCccceE
Confidence 0123567899999999999954 4899999999999999986 1223457799999
Q ss_pred EEeCCCCEEEEEEEecCCCC
Q 009358 518 VGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 518 v~vp~~g~~viRf~adNPG~ 537 (537)
+.+.++..++|||.+|+||.
T Consensus 408 v~v~~~~~~~v~~~a~~~g~ 427 (451)
T COG2132 408 VLVAPGERLLVRFDADYPGP 427 (451)
T ss_pred EEeCCCeEEEEEEeCCCCCc
Confidence 99999999999999999983
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.1e-48 Score=390.49 Aligned_cols=268 Identities=17% Similarity=0.216 Sum_probs=219.6
Q ss_pred cccccCccEEEEEEEEEEEEe-ecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCC--CCceeEecCccccCCCCCC
Q 009358 22 GLAVASITRHYKFDIKMQNVT-RLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP--NNISIHWHGIRQLLSGWAD 98 (537)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~-~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~D 98 (537)
...+...+++|+|++++..++ .+|..+.+|+|||++|||+|++++||+|+|+|+|.+. .++++||||.. ++|
T Consensus 20 ~~~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~d 94 (311)
T TIGR02376 20 IDRSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GAL 94 (311)
T ss_pred cccCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccC
Confidence 345677889999999999888 4699999999999999999999999999999999985 58899999963 379
Q ss_pred CCCcccccccCCCCeEEEEEEeCCCccceEEecchh----hhh-ccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeecc
Q 009358 99 GPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHIS----WLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNA 173 (537)
Q Consensus 99 Gv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~----~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~ 173 (537)
|++.++| |.||++++|+|.+ +++||||||||.+ .+. .||+|+|||++++..+ ..|+|++|+++||++.
T Consensus 95 g~~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~ 167 (311)
T TIGR02376 95 GGAALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTP 167 (311)
T ss_pred CCCccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecc
Confidence 9888887 9999999999997 7899999999964 355 8999999999875422 3588999999999986
Q ss_pred ChHHHHHHhhcC--CCCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEec
Q 009358 174 DTEAIINQSLQT--GAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVD 251 (537)
Q Consensus 174 ~~~~~~~~~~~~--g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~D 251 (537)
............ .....+++.++|||+.+++ .+.+++++|+++||||+|++....+.||++||.+++|+.|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~D 240 (311)
T TIGR02376 168 KDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVT 240 (311)
T ss_pred ccccccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEEC
Confidence 543211000000 0012356899999996542 1346899999999999999998888999999999999999
Q ss_pred CCCcCce--EecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEecCC
Q 009358 252 AIYIKSF--QTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPA 315 (537)
Q Consensus 252 G~~v~P~--~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~ 315 (537)
|.++.|. .++++.|+||||+||+|+++++ |.|+++|+.+.... .....|+|.|++..
T Consensus 241 G~~~~~~~~~~~~~~i~PG~R~dv~v~~~~p---G~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 241 GKFANPPNRDVETWFIPGGSAAAALYTFEQP---GVYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred CcccCCCCCCcceEEECCCceEEEEEEeCCC---eEEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 9999654 4899999999999999999986 99999999754421 24578999998755
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1.8e-36 Score=258.58 Aligned_cols=116 Identities=41% Similarity=0.766 Sum_probs=108.7
Q ss_pred EEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeE
Q 009358 35 DIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSY 114 (537)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~ 114 (537)
.|++..+.++|..+.+|+|||++|||+|++++||+|+|+|+|.+.++++|||||+++...+|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47888999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCC
Q 009358 115 VYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKR 150 (537)
Q Consensus 115 ~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~ 150 (537)
+|+|++++++||||||||.+.+. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999965599999999999976 9999999999863
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=2.2e-28 Score=222.02 Aligned_cols=150 Identities=29% Similarity=0.582 Sum_probs=122.2
Q ss_pred CceeEEeeeeeccChHHHHHHhhcCCC----CCCCCCcEEEcCccCCCcccCC-----CCcceEEEeCCcEEEEEEEecC
Q 009358 161 KEVPIIFGEWFNADTEAIINQSLQTGA----GPNVSDAYTINGLPGPLYNCSA-----KDTFKLKVKPGKTYLLRLINAA 231 (537)
Q Consensus 161 ~e~~l~l~d~~~~~~~~~~~~~~~~g~----~~~~~~~~liNG~~~~~~~~~~-----~~~~~~~v~~G~~~rlRliN~~ 231 (537)
+|++|+++||||.....+.......+. .+.++++++|||+.+ ++|+. ...+.+++++|++|||||||++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 488999999999988877664444321 256889999999964 44542 3578999999999999999999
Q ss_pred CCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEE
Q 009358 232 LNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEY 311 (537)
Q Consensus 232 ~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y 311 (537)
+...+.|+|+||+|+|||+||.+++|+.++++.|++||||||+|++++++ |+|+|++................|||+|
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPP--GNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCS--SEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCC--CeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999854 9999999632222223345688999999
Q ss_pred ecC
Q 009358 312 EAP 314 (537)
Q Consensus 312 ~~~ 314 (537)
+++
T Consensus 157 ~~~ 159 (159)
T PF00394_consen 157 DGA 159 (159)
T ss_dssp TTS
T ss_pred CCC
Confidence 763
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.76 E-value=8.5e-18 Score=148.94 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=80.5
Q ss_pred cCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCC---CCceeEecCccccCCCCCCCCCcccccccCCC----Ce--E
Q 009358 44 LCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP---NNISIHWHGIRQLLSGWADGPAYITQCPIQTG----QS--Y 114 (537)
Q Consensus 44 ~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~---~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG----~~--~ 114 (537)
.+....-+.++| .++|+|++++||+|+|+|+|.+. ..+.||+||......+-|||++.++||+|.|+ +. .
T Consensus 37 ~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 355666778888 55899999999999999999964 34666666665544445899999999998884 11 3
Q ss_pred EEEEEeCCCccceEEecchhhhh-ccceeeEEEc
Q 009358 115 VYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIF 147 (537)
Q Consensus 115 ~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~ 147 (537)
++.|+. .++||||||||..+++ +||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 455654 4799999999999888 7999999995
No 21
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.73 E-value=4.8e-18 Score=150.75 Aligned_cols=85 Identities=46% Similarity=0.844 Sum_probs=73.7
Q ss_pred ccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEeecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEE
Q 009358 449 VMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAI 528 (537)
Q Consensus 449 ~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~vi 528 (537)
.+.++.++.++.|++|||+|+|.+ ...||||||||+|+||+++.+.+... ....+++.+|.+|||+.|+++||++|
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEE
Confidence 346788999999999999999954 47999999999999999986655433 34467889999999999999999999
Q ss_pred EEEecCCCC
Q 009358 529 RFRADNPGD 537 (537)
Q Consensus 529 Rf~adNPG~ 537 (537)
||++||||.
T Consensus 105 ~~~~~~~G~ 113 (138)
T PF07731_consen 105 RFRADNPGP 113 (138)
T ss_dssp EEEETSTEE
T ss_pred EEEeecceE
Confidence 999999994
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.72 E-value=3.5e-16 Score=168.13 Aligned_cols=228 Identities=13% Similarity=0.172 Sum_probs=145.7
Q ss_pred EEEcCcCCC--ceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCC
Q 009358 51 ITVNGQFPG--PRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISGQ 123 (537)
Q Consensus 51 ~~~NG~~Pg--P~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~----vtq~~i~PG~~~~y~f~~~~~ 123 (537)
+++||+.+. +++.+++|+++|+||+|... ....+++.|..+.... .||.+- +....|.||||++..+++ ..
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 789999863 58999999999999999974 4577888887655443 799652 345679999999999996 56
Q ss_pred ccceEEecchhhhhccceeeEEEcCCC-CCCCC-CCCC----CCcee---------E---Eee-----ee----------
Q 009358 124 RGTLFWHAHISWLRATVYGPLVIFPKR-GVPYP-FPKP----YKEVP---------I---IFG-----EW---------- 170 (537)
Q Consensus 124 ~Gt~wYH~h~~~~~~Gl~G~liV~~~~-~~~~~-~~~~----d~e~~---------l---~l~-----d~---------- 170 (537)
.|.|+..+...+. .|...+.+..... ..+.| .+.. -.+.. . ... |-
T Consensus 327 ~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 7899988765322 2333333332211 11111 1000 00000 0 000 00
Q ss_pred ecc----------------------------------------ChHHHHH-HhhcC-C-----CCC----------C-CC
Q 009358 171 FNA----------------------------------------DTEAIIN-QSLQT-G-----AGP----------N-VS 192 (537)
Q Consensus 171 ~~~----------------------------------------~~~~~~~-~~~~~-g-----~~~----------~-~~ 192 (537)
-|. ....+.. ..+.. . ..+ . ..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 000 0000000 00000 0 000 0 11
Q ss_pred CcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEE
Q 009358 193 DAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTN 272 (537)
Q Consensus 193 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~d 272 (537)
..|+|||+.++ ....++++.|+++||||+|.+.+.|. ||+|||.|.++..||.+ +...|++.|.|||+++
T Consensus 486 ~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~~~Hp-mHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 486 FAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTMMAHP-IHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRS 555 (587)
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEECCCCCCcc-eeEcCceeeeecCCCcc--cccCCceeeCCCCEEE
Confidence 24899999753 23468899999999999998876555 99999999999888863 2234889999999999
Q ss_pred EEEEeCCCCCCceEEEEEeecc
Q 009358 273 ILLKAKPSYPNATFLMSARPYA 294 (537)
Q Consensus 273 v~v~~~~~~~~g~y~i~~~~~~ 294 (537)
+.|+++++ |.|++|||...
T Consensus 556 ~~f~ad~p---G~w~~HCH~l~ 574 (587)
T TIGR01480 556 FRVTADAL---GRWAYHCHMLL 574 (587)
T ss_pred EEEECCCC---eEEEEcCCCHH
Confidence 99999988 99999999643
No 23
>PRK10965 multicopper oxidase; Provisional
Probab=99.52 E-value=1.3e-12 Score=139.61 Aligned_cols=236 Identities=14% Similarity=0.177 Sum_probs=142.6
Q ss_pred eeEEEEEcCcCCCceEEEecCCEEEEEEEecCC-CCceeEe-cC--ccccCCCCCCCCCc-----ccccccCCCCeEEEE
Q 009358 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHW-HG--IRQLLSGWADGPAY-----ITQCPIQTGQSYVYN 117 (537)
Q Consensus 47 ~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG--~~~~~~~~~DGv~~-----vtq~~i~PG~~~~y~ 117 (537)
....++|||+. .|.+.+. |.++|+|+.|... ....+.+ .| +.+.. .||.+. +.+..|.||||++..
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa---~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA---SDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE---eCCCcccCccEeCeEEECccceEEEE
Confidence 34678999996 6888885 6699999999974 4556665 44 44443 688432 335669999999999
Q ss_pred EEeCCCccceEEecchhhhhccc--------eeeEEEcC--CC-CCCCC-----CCC-C------CCceeEEeeeeecc-
Q 009358 118 FTISGQRGTLFWHAHISWLRATV--------YGPLVIFP--KR-GVPYP-----FPK-P------YKEVPIIFGEWFNA- 173 (537)
Q Consensus 118 f~~~~~~Gt~wYH~h~~~~~~Gl--------~G~liV~~--~~-~~~~~-----~~~-~------d~e~~l~l~d~~~~- 173 (537)
+++ .+.|.++...-.... .|+ +-.+.|.. .. ....| .+. . .+...+.+..+...
T Consensus 286 v~~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 286 VDT-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred EEc-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchh
Confidence 997 556777665532111 111 11122321 11 00010 000 0 01222222211100
Q ss_pred --------ChHHHHHH--------hhcCC-------C----CC--CCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEE
Q 009358 174 --------DTEAIINQ--------SLQTG-------A----GP--NVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYL 224 (537)
Q Consensus 174 --------~~~~~~~~--------~~~~g-------~----~~--~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~r 224 (537)
........ ....| + .+ .....++|||+.+.. ..+.++++.|++.+
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~------~~~~~~~~~G~~e~ 437 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM------NKPMFAAKKGQYER 437 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC------CCcceecCCCCEEE
Confidence 00000000 00000 0 00 000124899997531 34567899999999
Q ss_pred EEEEecCCCCceeeEEcCCeEEEEEecCCCcC---ceEecEEEECCcceEEEEEEeCCCC-CCceEEEEEeeccCC
Q 009358 225 LRLINAALNDELFFSIANHSVTVVDVDAIYIK---SFQTDILLITPGQTTNILLKAKPSY-PNATFLMSARPYATG 296 (537)
Q Consensus 225 lRliN~~~~~~~~~~i~gh~~~via~DG~~v~---P~~~d~v~l~pGeR~dv~v~~~~~~-~~g~y~i~~~~~~~~ 296 (537)
|+|+|.+....+.|||||+.|+|++.||.+.. +.+.|+|.|.+ +++.++++++.+. ..|.|++|||.+...
T Consensus 438 w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~He 512 (523)
T PRK10965 438 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHE 512 (523)
T ss_pred EEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhh
Confidence 99999996555669999999999999999874 35689999977 8899999998542 127999999986543
No 24
>PLN02835 oxidoreductase
Probab=99.51 E-value=2.6e-12 Score=137.82 Aligned_cols=254 Identities=13% Similarity=0.136 Sum_probs=153.3
Q ss_pred eEEEEEcCcCCCceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCC
Q 009358 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISG 122 (537)
Q Consensus 48 ~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~----vtq~~i~PG~~~~y~f~~~~ 122 (537)
...++|||+.. +++.|++|+++|+|+.|... ....+|+.|..+.... .||.+- +....|.||||++..+++.+
T Consensus 191 ~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 46799999974 89999999999999999984 4678888887765443 799642 33466999999999999865
Q ss_pred CccceEEecchhhhhcccee-eEEEcCCCCC----CCCC-CCCC--------CceeEEeeeeeccChH---H-H--H--H
Q 009358 123 QRGTLFWHAHISWLRATVYG-PLVIFPKRGV----PYPF-PKPY--------KEVPIIFGEWFNADTE---A-I--I--N 180 (537)
Q Consensus 123 ~~Gt~wYH~h~~~~~~Gl~G-~liV~~~~~~----~~~~-~~~d--------~e~~l~l~d~~~~~~~---~-~--~--~ 180 (537)
.+|.||.+.-.......+.+ +++....... +.|. +..+ ......+......... . . . .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 68999988632111111112 2333322110 1110 0000 0000001100000000 0 0 0 0
Q ss_pred Hhh-cCCCCCC--CCCcEEEcCccCCCc---------------ccCC------------CCcceEEEeCCcEEEEEEEec
Q 009358 181 QSL-QTGAGPN--VSDAYTINGLPGPLY---------------NCSA------------KDTFKLKVKPGKTYLLRLINA 230 (537)
Q Consensus 181 ~~~-~~g~~~~--~~~~~liNG~~~~~~---------------~~~~------------~~~~~~~v~~G~~~rlRliN~ 230 (537)
... ....... ....+.|||.++... -|.. .....+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000 0000000 013577888765310 0100 012345778899999999998
Q ss_pred CCCCceeeEEcCCeEEEEEe-cCCC----------cCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCC
Q 009358 231 ALNDELFFSIANHSVTVVDV-DAIY----------IKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGT 299 (537)
Q Consensus 231 ~~~~~~~~~i~gh~~~via~-DG~~----------v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~ 299 (537)
+... +.||+|||+|+|++. +|.+ ..|...|++.+.++....+.+++++| |.|.||||.....
T Consensus 429 ~~~~-HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNP---G~Wl~HCHi~~H~--- 501 (539)
T PLN02835 429 EKTM-QSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQ---GMWNMRSAIWERQ--- 501 (539)
T ss_pred CCCC-CCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCC---EEeeeeecchhhh---
Confidence 7554 459999999999987 5532 24889999999999999999999999 9999999974432
Q ss_pred CCCcceEEEEEEe
Q 009358 300 FDNSTVAGILEYE 312 (537)
Q Consensus 300 ~~~~~~~ail~Y~ 312 (537)
......+++..
T Consensus 502 --~~Gm~~~~~V~ 512 (539)
T PLN02835 502 --YLGQQFYLRVW 512 (539)
T ss_pred --hcccEEEEEEc
Confidence 13445555554
No 25
>PRK10883 FtsI repressor; Provisional
Probab=99.46 E-value=2.8e-12 Score=135.76 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=136.2
Q ss_pred eeeEEEEEcCcCCCceEEEecCCEEEEEEEecCC-CCceeEe-cCccccCCCCCCCCCc-----ccccccCCCCeEEEEE
Q 009358 46 HTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHW-HGIRQLLSGWADGPAY-----ITQCPIQTGQSYVYNF 118 (537)
Q Consensus 46 ~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~DGv~~-----vtq~~i~PG~~~~y~f 118 (537)
.....+++||+. .|.|.|+.| ++|+|+.|... ....+++ +|....... .||-.. +.+..|.||||++..+
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 345679999996 699999875 89999999985 5567777 554332222 585332 3456799999999999
Q ss_pred EeCCCccceEEecchhhh-hccceee------------EEEcCCCCCCCCCCCCCCceeEEeee--eeccChHHHHHHhh
Q 009358 119 TISGQRGTLFWHAHISWL-RATVYGP------------LVIFPKRGVPYPFPKPYKEVPIIFGE--WFNADTEAIINQSL 183 (537)
Q Consensus 119 ~~~~~~Gt~wYH~h~~~~-~~Gl~G~------------liV~~~~~~~~~~~~~d~e~~l~l~d--~~~~~~~~~~~~~~ 183 (537)
++ .+.+.+.+++-.... ...+.+. +-++...... .. ....+..+.. ........ ....
T Consensus 284 d~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~--~~~~ 356 (471)
T PRK10883 284 DM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIR--SREI 356 (471)
T ss_pred EC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcc--eEEE
Confidence 97 555666666532110 1111111 1111111000 00 0000000000 00000000 0000
Q ss_pred cCCCCCCCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCc---eEe
Q 009358 184 QTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS---FQT 260 (537)
Q Consensus 184 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P---~~~ 260 (537)
..+ .+.+.|||+.+.. ....++++.|++++|+|.|.. .+.||||+|.|+|++.||....| -+.
T Consensus 357 ~l~-----~~~~~INg~~~~~------~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gwk 422 (471)
T PRK10883 357 SLG-----DDLPGINGALWDM------NRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGWK 422 (471)
T ss_pred Eec-----CCcCccCCcccCC------CcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccCcC
Confidence 001 1234799997631 233568999999999998863 35699999999999999986543 457
Q ss_pred cEEEECCcceEEEEEEeCCCCCCc---eEEEEEeeccCC
Q 009358 261 DILLITPGQTTNILLKAKPSYPNA---TFLMSARPYATG 296 (537)
Q Consensus 261 d~v~l~pGeR~dv~v~~~~~~~~g---~y~i~~~~~~~~ 296 (537)
|+|.+. +++.|+++++.+. + .|++|||.++..
T Consensus 423 DTV~v~--~~v~i~~~f~~~~--~~~~~~m~HCHiLeHe 457 (471)
T PRK10883 423 DTVWVD--GQVELLVYFGQPS--WAHFPFLFYSQTLEMA 457 (471)
T ss_pred cEEEcC--CeEEEEEEecCCC--CCCCcEEeeccccccc
Confidence 999994 5699999999863 3 799999987654
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.46 E-value=1.6e-11 Score=132.58 Aligned_cols=244 Identities=13% Similarity=0.135 Sum_probs=145.0
Q ss_pred EEEEEcCcC-C--------CceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCCc----ccccccCCCCeE
Q 009358 49 SIITVNGQF-P--------GPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSY 114 (537)
Q Consensus 49 ~~~~~NG~~-P--------gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~----vtq~~i~PG~~~ 114 (537)
..++|||+. + .++|.|++|+++|+||.|... ....+|.+|..+.... .||++- +....|.||||+
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 568999984 1 148999999999999999974 4567788877654443 799752 334669999999
Q ss_pred EEEEEeCCCccceEEecchhhh----hc-cceeeEEEcCCC-CCCCCCCC----CCC-----c----e-eEEeee--eec
Q 009358 115 VYNFTISGQRGTLFWHAHISWL----RA-TVYGPLVIFPKR-GVPYPFPK----PYK-----E----V-PIIFGE--WFN 172 (537)
Q Consensus 115 ~y~f~~~~~~Gt~wYH~h~~~~----~~-Gl~G~liV~~~~-~~~~~~~~----~d~-----e----~-~l~l~d--~~~ 172 (537)
+..+++.+.+|.||.+.+.... .. ....+++..... ....+... .+. + . .+.... +..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999984458999999874311 11 111233333221 11101000 000 0 0 000000 000
Q ss_pred -cChHH-H---HHHhhcCCC-----C-CCCCCcEEEcCccCCC---------------------------ccc-CCC---
Q 009358 173 -ADTEA-I---INQSLQTGA-----G-PNVSDAYTINGLPGPL---------------------------YNC-SAK--- 210 (537)
Q Consensus 173 -~~~~~-~---~~~~~~~g~-----~-~~~~~~~liNG~~~~~---------------------------~~~-~~~--- 210 (537)
..... + +........ . ....-.+.|||.++.. .-| +..
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 0 000000000 0 0001135677764210 001 000
Q ss_pred -------CcceEEEeCCcEEEEEEEecCC--CCceeeEEcCCeEEEEEec-CCC-----------cCceEecEEEECCcc
Q 009358 211 -------DTFKLKVKPGKTYLLRLINAAL--NDELFFSIANHSVTVVDVD-AIY-----------IKSFQTDILLITPGQ 269 (537)
Q Consensus 211 -------~~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~v~l~pGe 269 (537)
....+.++.|+++.+.|.|.+. ...+.||+|||+|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1235788999999999999753 2256699999999999886 321 137778999999999
Q ss_pred eEEEEEEeCCCCCCceEEEEEeeccCC
Q 009358 270 TTNILLKAKPSYPNATFLMSARPYATG 296 (537)
Q Consensus 270 R~dv~v~~~~~~~~g~y~i~~~~~~~~ 296 (537)
.+.|.++++++ |.|.+|||.....
T Consensus 486 ~vvirf~adNP---G~W~~HCHi~~H~ 509 (539)
T TIGR03389 486 WAAIRFVADNP---GVWFMHCHLEVHT 509 (539)
T ss_pred eEEEEEecCCC---eEEEEEecccchh
Confidence 99999999998 9999999975543
No 27
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.44 E-value=1.4e-12 Score=111.62 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=77.2
Q ss_pred ccCccEEEEEEEE--EEEE---eecCeeeEEE-EEcCcCCCceEEEecCCEEEEEEEecCCCCc--eeEecCccccCCCC
Q 009358 25 VASITRHYKFDIK--MQNV---TRLCHTKSII-TVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGW 96 (537)
Q Consensus 25 ~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~--siH~HG~~~~~~~~ 96 (537)
+.|..|+|+++|+ +..+ +..|.....+ ++|+++..+.|+|++||+|+++++|..+.++ .+++||+
T Consensus 20 ~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi------- 92 (135)
T TIGR03096 20 AQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI------- 92 (135)
T ss_pred hhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc-------
Confidence 4456789999999 6555 4568777666 9999999899999999999999999876543 3443332
Q ss_pred CCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhh
Q 009358 97 ADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR 137 (537)
Q Consensus 97 ~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~ 137 (537)
+..|+||++.+|+|.+ +++|+|||||..+...
T Consensus 93 --------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 93 --------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred --------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 2358999999999996 9999999999877643
No 28
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.33 E-value=4.6e-11 Score=126.86 Aligned_cols=235 Identities=16% Similarity=0.142 Sum_probs=150.1
Q ss_pred CeeeEEEEEcCcCCCceEEEecCCEEEEEEEecC-CCCceeEecCccccCCCCCCCCC----cccccccCCCCeEEEEEE
Q 009358 45 CHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADGPA----YITQCPIQTGQSYVYNFT 119 (537)
Q Consensus 45 g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~----~vtq~~i~PG~~~~y~f~ 119 (537)
|.......+||+.. | +...++..+++|+.|.. .....+++.|.+..... .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~~-p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAIL-P-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCcc-c-eeecCCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 45667778888552 4 55556666999999998 66677777776654443 68865 566788999999999999
Q ss_pred eCCCccceEEecchhhhhccceeeEEEcCCCCCCCCC-------CCC---CCceeEEeeeeeccChHHHHHHhhcCCCCC
Q 009358 120 ISGQRGTLFWHAHISWLRATVYGPLVIFPKRGVPYPF-------PKP---YKEVPIIFGEWFNADTEAIINQSLQTGAGP 189 (537)
Q Consensus 120 ~~~~~Gt~wYH~h~~~~~~Gl~G~liV~~~~~~~~~~-------~~~---d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~ 189 (537)
. ...|++-+.+......+-+.+..-.........+. ... +......+.................. ..
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--GG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--cc
Confidence 7 55889988888722112222222222111000100 000 11111111111111110000000000 00
Q ss_pred CCCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCc---CceEecEEEEC
Q 009358 190 NVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI---KSFQTDILLIT 266 (537)
Q Consensus 190 ~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v---~P~~~d~v~l~ 266 (537)
.....+.+||+.++. ....+.++.|+++||+|.|-+...|. ||+||+.|.|++.| ... .+..+|++.+.
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~~~HP-~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~ 411 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTPMPHP-FHLHGHFFQVLSGD-APAPGAAPGWKDTVLVA 411 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCCCccC-eEEcCceEEEEecC-CCcccccCccceEEEeC
Confidence 123568888886542 24678999999999999999985554 99999999999999 332 45789999999
Q ss_pred CcceEEEEEEeCCCCCCceEEEEEeeccCC
Q 009358 267 PGQTTNILLKAKPSYPNATFLMSARPYATG 296 (537)
Q Consensus 267 pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~ 296 (537)
+|+++.+.++++.+ |.|++|||.+...
T Consensus 412 ~~~~~~v~~~a~~~---g~~~~HCH~l~H~ 438 (451)
T COG2132 412 PGERLLVRFDADYP---GPWMFHCHILEHE 438 (451)
T ss_pred CCeEEEEEEeCCCC---CceEEeccchhHh
Confidence 99999999999988 8999999976543
No 29
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.30 E-value=1.7e-10 Score=115.77 Aligned_cols=224 Identities=18% Similarity=0.141 Sum_probs=132.7
Q ss_pred CCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCC-CceeeEEcCCeEEEEEecCCCcCceEecEEEECCcce
Q 009358 192 SDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALN-DELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQT 270 (537)
Q Consensus 192 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR 270 (537)
.+.+++||+. ..+.++++.|++++++|.|.... ..+.+|+|++. +.||... ...|.||++
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 3689999984 35789999999999999998632 34668898874 4576531 223899999
Q ss_pred EEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccc
Q 009358 271 TNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTAFAFNYTTR 350 (537)
Q Consensus 271 ~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 350 (537)
+.+.++++++ |.||+|||...... ........+.|..+.... .|..... +.-.
T Consensus 108 ~ty~F~~~~~---Gty~YH~H~~~~~~-~q~~~Gl~G~liV~~~~~------------------~~~~d~e-----~~l~ 160 (311)
T TIGR02376 108 ATLRFKATRP---GAFVYHCAPPGMVP-WHVVSGMNGAIMVLPREG------------------LPEYDKE-----YYIG 160 (311)
T ss_pred EEEEEEcCCC---EEEEEEcCCCCchh-HHhhcCcceEEEeeccCC------------------CcCccee-----EEEe
Confidence 9999999876 99999999532100 011123455555543221 0111100 0000
Q ss_pred cccccCCCCCCCCCCCcceEEEEEeccCcCCCCCCCCccCCCCCceeEeeecCeeecCCChhhHHhhhcCCCCccccCCC
Q 009358 351 LRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFP 430 (537)
Q Consensus 351 l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~pll~~~~~~~~~~~~~~~~ 430 (537)
++.+...... .....+...... . .... .. ...+||+.+..
T Consensus 161 l~d~~~~~~~-----~~~~~~~~~~~~--~--------~~~~-~~--~~~iNG~~~~~---------------------- 200 (311)
T TIGR02376 161 ESDLYTPKDE-----GEGGAYEDDVAA--M--------RTLT-PT--HVVFNGAVGAL---------------------- 200 (311)
T ss_pred eeeEeccccc-----cccccccchHHH--H--------hcCC-CC--EEEECCccCCC----------------------
Confidence 1111000000 000000000000 0 0000 11 24577753200
Q ss_pred CCCcccccCCCCCCCCCcccCCceEEEeeCCCEEEEEEeeCCCCCCCCCCccccCCCeeEEeecCCCCCCCCCCCCCCCC
Q 009358 431 STPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLI 510 (537)
Q Consensus 431 ~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~veivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~ 510 (537)
.....++.|+++.|.|.|.+. ...+.||+||++|++|.. .|. +.
T Consensus 201 ----------------------~~~~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~-DG~-----------~~ 244 (311)
T TIGR02376 201 ----------------------TGDNALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWV-TGK-----------FA 244 (311)
T ss_pred ----------------------CCCcccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEE-CCc-----------cc
Confidence 001256789999999999652 466899999999999998 342 23
Q ss_pred CCCc--cceEEeCCCCEEEEEEEecCCCC
Q 009358 511 DPVE--RNTVGVPSGGWVAIRFRADNPGD 537 (537)
Q Consensus 511 ~P~~--RDTv~vp~~g~~viRf~adNPG~ 537 (537)
+|+. .||+.|.+|.-..|-|++++||.
T Consensus 245 ~~~~~~~~~~~i~PG~R~dv~v~~~~pG~ 273 (311)
T TIGR02376 245 NPPNRDVETWFIPGGSAAAALYTFEQPGV 273 (311)
T ss_pred CCCCCCcceEEECCCceEEEEEEeCCCeE
Confidence 3333 69999999999999999999983
No 30
>PLN02991 oxidoreductase
Probab=99.28 E-value=1.2e-09 Score=116.88 Aligned_cols=241 Identities=12% Similarity=0.111 Sum_probs=142.5
Q ss_pred eEEEEEcCcCCCceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCC----cccccccCCCCeEEEEEEeCC
Q 009358 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPA----YITQCPIQTGQSYVYNFTISG 122 (537)
Q Consensus 48 ~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~----~vtq~~i~PG~~~~y~f~~~~ 122 (537)
...++|||+...+++.|++|+++|+|+.|... ....+++.|..+.... .||.+ .+.+..|.||||++..+++.+
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 46789999975589999999999999999975 3466777776654433 79964 234567999999999999866
Q ss_pred CccceEEecchhhhhcccee-eEEEcCCCCCC--CCCCC--CCCceeEEee---eeec-----cC--hH--HH--H--HH
Q 009358 123 QRGTLFWHAHISWLRATVYG-PLVIFPKRGVP--YPFPK--PYKEVPIIFG---EWFN-----AD--TE--AI--I--NQ 181 (537)
Q Consensus 123 ~~Gt~wYH~h~~~~~~Gl~G-~liV~~~~~~~--~~~~~--~d~e~~l~l~---d~~~-----~~--~~--~~--~--~~ 181 (537)
..|.||.-.........+.+ +|+-.+..... .+.+. .+.+...-.. ++-. .. .. .. . ..
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~ 348 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITR 348 (543)
T ss_pred CCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccce
Confidence 67889976543111111112 33333222110 01100 0000000000 0000 00 00 00 0 00
Q ss_pred hh--cCCCC-CCCCCcEEEcCccCCC----------cccCC-----------------CCcceEEEeCCcEEEEEEEecC
Q 009358 182 SL--QTGAG-PNVSDAYTINGLPGPL----------YNCSA-----------------KDTFKLKVKPGKTYLLRLINAA 231 (537)
Q Consensus 182 ~~--~~g~~-~~~~~~~liNG~~~~~----------~~~~~-----------------~~~~~~~v~~G~~~rlRliN~~ 231 (537)
.. ..+.. ....-.+.|||.++.. ++-++ .....+.++.|+.+.+=|-|..
T Consensus 349 ~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~ 428 (543)
T PLN02991 349 TIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWE 428 (543)
T ss_pred eEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCC
Confidence 00 00000 0001246777776421 00000 0122456788888888777765
Q ss_pred CCCceeeEEcCCeEEEEEecC-----------CCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 232 LNDELFFSIANHSVTVVDVDA-----------IYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 232 ~~~~~~~~i~gh~~~via~DG-----------~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.. .+.||+|||+|+|++... ++..|...|++.+.++.-.-|.+++++| |-|.+|||..
T Consensus 429 ~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~W~~HCHi~ 497 (543)
T PLN02991 429 DI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNV---GMWNLRSELW 497 (543)
T ss_pred CC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCC---EEeeeeeCcc
Confidence 54 455999999999997532 1235888999999999999999999999 9999999973
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=99.27 E-value=5.1e-10 Score=119.94 Aligned_cols=240 Identities=16% Similarity=0.180 Sum_probs=143.1
Q ss_pred eEEEEEcCcCC-CceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCC----cccccccCCCCeEEEEEEeC
Q 009358 48 KSIITVNGQFP-GPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPA----YITQCPIQTGQSYVYNFTIS 121 (537)
Q Consensus 48 ~~~~~~NG~~P-gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~----~vtq~~i~PG~~~~y~f~~~ 121 (537)
...++|||+.+ .|+|.|++|+++|+|+.|... ....+++.|..+.... .||.+ .+.+..|.||||++..+++.
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 35689999953 479999999999999999974 4566777776654443 79954 23456799999999999985
Q ss_pred CCc-c---ceEEecchhhhhccce-eeEEEcCCCCCC--CCCC---CC-CC----ceeEEe----eee--eccChH--HH
Q 009358 122 GQR-G---TLFWHAHISWLRATVY-GPLVIFPKRGVP--YPFP---KP-YK----EVPIIF----GEW--FNADTE--AI 178 (537)
Q Consensus 122 ~~~-G---t~wYH~h~~~~~~Gl~-G~liV~~~~~~~--~~~~---~~-d~----e~~l~l----~d~--~~~~~~--~~ 178 (537)
+++ | .||.+.-.......+. .+++..+..... .|.+ .. +. +....+ .-. ...... ..
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 343 4 7998876421111111 244444332110 1110 00 00 000000 000 000000 00
Q ss_pred --H--HHhh-cCCCC--CCCCCcEEEcCccCCC----------cc---c--CC------------CCcceEEEeCCcEEE
Q 009358 179 --I--NQSL-QTGAG--PNVSDAYTINGLPGPL----------YN---C--SA------------KDTFKLKVKPGKTYL 224 (537)
Q Consensus 179 --~--~~~~-~~g~~--~~~~~~~liNG~~~~~----------~~---~--~~------------~~~~~~~v~~G~~~r 224 (537)
. .... ..... ......+.|||.++.. +. + ++ .....+.++.|+.|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 0 0000 00000 0001346788876531 00 0 00 012346788899998
Q ss_pred EEEEecCCCCceeeEEcCCeEEEEEe-----cC------CCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEee
Q 009358 225 LRLINAALNDELFFSIANHSVTVVDV-----DA------IYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 225 lRliN~~~~~~~~~~i~gh~~~via~-----DG------~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
+-|-|.... .+.||+|||+|+||+. |+ ++..|...|++.+.++.-.-|.+++++| |.|.||||.
T Consensus 427 iViqn~~~~-~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPLFS-LESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQ---GMWNVRSQK 501 (545)
T ss_pred EEEeCCCCC-CCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCC---eEEeeeecC
Confidence 888887644 4559999999999966 21 2246888999999999999999999999 999999996
No 32
>PLN02354 copper ion binding / oxidoreductase
Probab=99.23 E-value=7.8e-10 Score=119.02 Aligned_cols=240 Identities=13% Similarity=0.148 Sum_probs=144.2
Q ss_pred EEEEEcCcCC------CceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCCc----ccccccCCCCeEEEE
Q 009358 49 SIITVNGQFP------GPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYN 117 (537)
Q Consensus 49 ~~~~~NG~~P------gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~----vtq~~i~PG~~~~y~ 117 (537)
..++|||+.. -|+|.|++|.+.|+||.|... ....+|..|..+.... .||++- +....|.||||++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEEE
Confidence 5689999841 279999999999999999984 5567788777654433 799752 334669999999999
Q ss_pred EEeCCCccceEEecchhhhhccce-eeEEEcCCCCC----CCCCCCCCCceeE-Eeeeee-------ccCh--H--HH--
Q 009358 118 FTISGQRGTLFWHAHISWLRATVY-GPLVIFPKRGV----PYPFPKPYKEVPI-IFGEWF-------NADT--E--AI-- 178 (537)
Q Consensus 118 f~~~~~~Gt~wYH~h~~~~~~Gl~-G~liV~~~~~~----~~~~~~~d~e~~l-~l~d~~-------~~~~--~--~~-- 178 (537)
+++.+.+|.||...........+. .+++....... ..|....+..... ...+.. .... . ..
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 998556899999887432211111 23333332211 0110000000000 000000 0000 0 00
Q ss_pred H--HHh--hcCCCCC-CCCCcEEEcCccCCCc----------c------------------cC--CCCcceEEEeCCcEE
Q 009358 179 I--NQS--LQTGAGP-NVSDAYTINGLPGPLY----------N------------------CS--AKDTFKLKVKPGKTY 223 (537)
Q Consensus 179 ~--~~~--~~~g~~~-~~~~~~liNG~~~~~~----------~------------------~~--~~~~~~~~v~~G~~~ 223 (537)
. ... ....... .....+.|||.++... + |. ......+.++.|+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0 000 0000000 0012467787654210 0 00 001234677888999
Q ss_pred EEEEEecCCCCceeeEEcCCeEEEEEecC-----------CCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEee
Q 009358 224 LLRLINAALNDELFFSIANHSVTVVDVDA-----------IYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 224 rlRliN~~~~~~~~~~i~gh~~~via~DG-----------~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
.+-|.|.... .+.||+|||+|+||+.-- +...|...|++.+.++.-.-+.+++++| |-|.||||.
T Consensus 429 eiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---GvW~~HCHi 504 (552)
T PLN02354 429 EIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNA---GMWNIRSEN 504 (552)
T ss_pred EEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCC---eEEeeeccc
Confidence 9988887644 455999999999996542 1135888999999999999999999999 999999997
Q ss_pred c
Q 009358 293 Y 293 (537)
Q Consensus 293 ~ 293 (537)
.
T Consensus 505 ~ 505 (552)
T PLN02354 505 W 505 (552)
T ss_pred c
Confidence 3
No 33
>PLN02792 oxidoreductase
Probab=99.21 E-value=4.9e-09 Score=112.41 Aligned_cols=242 Identities=14% Similarity=0.112 Sum_probs=144.1
Q ss_pred eeEEEEEcCcC--CCceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCC----cccccccCCCCeEEEEEE
Q 009358 47 TKSIITVNGQF--PGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPA----YITQCPIQTGQSYVYNFT 119 (537)
Q Consensus 47 ~~~~~~~NG~~--PgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~----~vtq~~i~PG~~~~y~f~ 119 (537)
....++|||+- ..++|.|++|+++|+||.|... ....+++.|..+.... .||.+ .+....|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 34679999994 2479999999999999999974 4567777776654433 79964 233566999999999999
Q ss_pred eCCCccceEEecchhhhhcccee-eEEEcCCCCCCC---C-CCC-CCCceeE---EeeeeeccC-----hH----HH--H
Q 009358 120 ISGQRGTLFWHAHISWLRATVYG-PLVIFPKRGVPY---P-FPK-PYKEVPI---IFGEWFNAD-----TE----AI--I 179 (537)
Q Consensus 120 ~~~~~Gt~wYH~h~~~~~~Gl~G-~liV~~~~~~~~---~-~~~-~d~e~~l---~l~d~~~~~-----~~----~~--~ 179 (537)
+.+.+|.||...........+.+ +|+-........ + .+. .+..... ...++.... .. .. .
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 85557999988664211111122 333333221110 0 000 0000000 000000000 00 00 0
Q ss_pred H--Hhh--cCCCC-CCCCCcEEEcCccCCC----------cc---c-C--------------CCCcceEEEeCCcEEEEE
Q 009358 180 N--QSL--QTGAG-PNVSDAYTINGLPGPL----------YN---C-S--------------AKDTFKLKVKPGKTYLLR 226 (537)
Q Consensus 180 ~--~~~--~~g~~-~~~~~~~liNG~~~~~----------~~---~-~--------------~~~~~~~~v~~G~~~rlR 226 (537)
. ... ..+.. ....-.+.|||.++.. ++ . + ......+.++.|+.|-+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 00000 0001245678775421 00 0 0 001335678889999998
Q ss_pred EEecCCCCceeeEEcCCeEEEEEec-C----------CCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 227 LINAALNDELFFSIANHSVTVVDVD-A----------IYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 227 liN~~~~~~~~~~i~gh~~~via~D-G----------~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
|-|..... +.||+|||+|+||+.- | +++.|...|++.+.++.-.-|.++++++ |-|.+|||..
T Consensus 417 iqn~~~~~-HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNP---GvW~~HCh~~ 490 (536)
T PLN02792 417 FQNREKIV-QSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNV---GMWNLRSQFW 490 (536)
T ss_pred EECCCCCC-CCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCC---EEEeeeEcch
Confidence 88865444 5599999999999742 1 1235888999999999999999999999 9999999853
No 34
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.20 E-value=1.1e-09 Score=118.32 Aligned_cols=232 Identities=13% Similarity=0.116 Sum_probs=135.9
Q ss_pred eEEEecCCEEEEEEEecC-CCCceeEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCCc-cceEEecchh
Q 009358 61 RIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISGQR-GTLFWHAHIS 134 (537)
Q Consensus 61 ~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~----vtq~~i~PG~~~~y~f~~~~~~-Gt~wYH~h~~ 134 (537)
+|.|++|+++|+||.|.. .....++++|..+.... .||.+- +....|.||||++..+++.+.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999987 45666777766554333 699642 3355699999999999984334 5899987644
Q ss_pred hhh--ccceeeEEEcCCCCCCC-C-----C-CCCCC-----ceeE-Eeeee-eccChHHHHHH-hh-cCCCCCCCCCcEE
Q 009358 135 WLR--ATVYGPLVIFPKRGVPY-P-----F-PKPYK-----EVPI-IFGEW-FNADTEAIINQ-SL-QTGAGPNVSDAYT 196 (537)
Q Consensus 135 ~~~--~Gl~G~liV~~~~~~~~-~-----~-~~~d~-----e~~l-~l~d~-~~~~~~~~~~~-~~-~~g~~~~~~~~~l 196 (537)
... .....+++......... + . +..+. +..+ .+... ........... .. ..+........+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 331 11122444443211100 0 0 00000 0000 00000 00000000000 00 0000000112367
Q ss_pred EcCccCCC-------------------------cc-------cCC-----CCcceEEEeCCcEEEEEEEecCC-----CC
Q 009358 197 INGLPGPL-------------------------YN-------CSA-----KDTFKLKVKPGKTYLLRLINAAL-----ND 234 (537)
Q Consensus 197 iNG~~~~~-------------------------~~-------~~~-----~~~~~~~v~~G~~~rlRliN~~~-----~~ 234 (537)
+||.++.. +. |.. ...-.+.++.|++|.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 77765420 00 000 01234788899999999999753 23
Q ss_pred ceeeEEcCCeEEEEEec-CCC-----------cCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCC
Q 009358 235 ELFFSIANHSVTVVDVD-AIY-----------IKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATG 296 (537)
Q Consensus 235 ~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~ 296 (537)
.+.||+|||+|+|++.. |.+ ..|...|++.+.++.-.-|.+++++| |.|.+|||.....
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNP---G~W~~HCHi~~H~ 513 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNP---GVWAFHCHIEPHL 513 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCC---eEeeeeccchhhh
Confidence 46699999999999987 432 13778899999999999999999999 9999999975543
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.19 E-value=1e-09 Score=118.39 Aligned_cols=244 Identities=16% Similarity=0.166 Sum_probs=140.9
Q ss_pred EEEEEcCcC---------------CCceEEEecCCEEEEEEEecCC-CCceeEecCcc-ccCCCCCCCCCc----ccccc
Q 009358 49 SIITVNGQF---------------PGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIR-QLLSGWADGPAY----ITQCP 107 (537)
Q Consensus 49 ~~~~~NG~~---------------PgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~-~~~~~~~DGv~~----vtq~~ 107 (537)
..++|||+. ..|+|+|++|+++|+|+.|... ....+++.|.. +.... .||.+- +....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 468899983 1278999999999999999975 34566666655 33332 799741 23456
Q ss_pred cCCCCeEEEEEEeCCC-------ccceEEecchhhhhcccee-eEEEcC-CCCCCCC---CC---CCC------CceeE-
Q 009358 108 IQTGQSYVYNFTISGQ-------RGTLFWHAHISWLRATVYG-PLVIFP-KRGVPYP---FP---KPY------KEVPI- 165 (537)
Q Consensus 108 i~PG~~~~y~f~~~~~-------~Gt~wYH~h~~~~~~Gl~G-~liV~~-~~~~~~~---~~---~~d------~e~~l- 165 (537)
|.||||++..+++.+. +|-||-..-....-..+.+ +++... ......+ .. ... .+..+
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 9999999999998432 3889976543211111212 333332 1111111 00 000 01000
Q ss_pred Eeeeeec---cChHHHHHH-hhcCCCC--C-CCCCcEEEcCccCCC--c----------c---c------------CCCC
Q 009358 166 IFGEWFN---ADTEAIINQ-SLQTGAG--P-NVSDAYTINGLPGPL--Y----------N---C------------SAKD 211 (537)
Q Consensus 166 ~l~d~~~---~~~~~~~~~-~~~~g~~--~-~~~~~~liNG~~~~~--~----------~---~------------~~~~ 211 (537)
.+..-.. ......... ....+.. . .....+++||.++.. . + . ....
T Consensus 331 pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
T TIGR03390 331 PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPE 410 (538)
T ss_pred ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcC
Confidence 0000000 000000000 0000000 0 011357788876531 0 0 0 0001
Q ss_pred cceEEEeCCcEEEEEEEecC-------CCCceeeEEcCCeEEEEEe-cCCC-----------cCceEecEEEEC------
Q 009358 212 TFKLKVKPGKTYLLRLINAA-------LNDELFFSIANHSVTVVDV-DAIY-----------IKSFQTDILLIT------ 266 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~-------~~~~~~~~i~gh~~~via~-DG~~-----------v~P~~~d~v~l~------ 266 (537)
...+.++.|+++.+.|.|.. ....+.||+|||+|+||+. +|.+ ..|...|++.+.
T Consensus 411 ~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~ 490 (538)
T TIGR03390 411 TRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKV 490 (538)
T ss_pred ceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccc
Confidence 12567889999999999975 2345679999999999985 4543 248889999984
Q ss_pred ----CcceEEEEEEeCCCCCCceEEEEEeeccCC
Q 009358 267 ----PGQTTNILLKAKPSYPNATFLMSARPYATG 296 (537)
Q Consensus 267 ----pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~ 296 (537)
++.-..|.++++++ |.|.||||.....
T Consensus 491 ~~~~~~~~~~ir~~~dNP---G~W~~HCHi~~H~ 521 (538)
T TIGR03390 491 VPGAPAGWRAWRIRVTNP---GVWMMHCHILQHM 521 (538)
T ss_pred cccCCCceEEEEEEcCCC---eeEEEeccchhhh
Confidence 78889999999998 9999999975543
No 36
>PLN02604 oxidoreductase
Probab=99.19 E-value=2.2e-09 Score=116.51 Aligned_cols=231 Identities=11% Similarity=0.096 Sum_probs=135.4
Q ss_pred ceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCCcc-ceEEecch
Q 009358 60 PRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISGQRG-TLFWHAHI 133 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~----vtq~~i~PG~~~~y~f~~~~~~G-t~wYH~h~ 133 (537)
++|.+++|.++|+||.|... ....+++.|..+.... .||.+- +....|.||||++..+++.+.+| .||-+...
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa-~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE-ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE-eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 48999999999999999974 4556666665543333 799652 33566999999999999844445 79988643
Q ss_pred hhh---h-ccceeeEEEcCCCC--CCCCCCCCC----CceeEEeeee---------eccChHHHHHH--hhcCCCCCCCC
Q 009358 134 SWL---R-ATVYGPLVIFPKRG--VPYPFPKPY----KEVPIIFGEW---------FNADTEAIINQ--SLQTGAGPNVS 192 (537)
Q Consensus 134 ~~~---~-~Gl~G~liV~~~~~--~~~~~~~~d----~e~~l~l~d~---------~~~~~~~~~~~--~~~~g~~~~~~ 192 (537)
... . .+ .+|+...... ...+..... .+....+... ........... ...........
T Consensus 303 ~~~~~~~~~~--~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 380 (566)
T PLN02604 303 VSRNNTTPPG--LAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGY 380 (566)
T ss_pred ccCCCCCcce--eEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCe
Confidence 221 1 23 2344433211 000100000 0000000000 00000000000 00000000001
Q ss_pred CcEEEcCccCCCc---------------ccCC-----------------------CCcceEEEeCCcEEEEEEEecCC--
Q 009358 193 DAYTINGLPGPLY---------------NCSA-----------------------KDTFKLKVKPGKTYLLRLINAAL-- 232 (537)
Q Consensus 193 ~~~liNG~~~~~~---------------~~~~-----------------------~~~~~~~v~~G~~~rlRliN~~~-- 232 (537)
..|.|||.++... -|.. .....+.++.|++|.+.|.|...
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 2577777654210 0000 01224788899999999999853
Q ss_pred ---CCceeeEEcCCeEEEEEec-CCC-----------cCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeeccCC
Q 009358 233 ---NDELFFSIANHSVTVVDVD-AIY-----------IKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATG 296 (537)
Q Consensus 233 ---~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~ 296 (537)
...+.||+|||+|+|++.. |.+ ..|...|++.+.++.-.-|.++++++ |-|.+|||.....
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNP---G~WlfHCHI~~Hl 536 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNP---GVWAFHCHIESHF 536 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCC---eEeeEeecchhHh
Confidence 2356799999999999987 432 13777899999999999999999998 9999999975443
No 37
>PLN02191 L-ascorbate oxidase
Probab=99.05 E-value=1.4e-08 Score=110.12 Aligned_cols=238 Identities=11% Similarity=0.083 Sum_probs=135.4
Q ss_pred EcCcCCCceEEEecCCEEEEEEEecC-CCCceeEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCCc-cc
Q 009358 53 VNGQFPGPRIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISGQR-GT 126 (537)
Q Consensus 53 ~NG~~PgP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~----vtq~~i~PG~~~~y~f~~~~~~-Gt 126 (537)
+||+.-.++|.|++|.+.|+|+.|.. .....+++.|..+.... .||.+- +....|+||||++..+++.+.+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 44433223799999999999999997 34556666665554433 799753 3356699999999999985445 48
Q ss_pred eEEecchhhhh----ccceeeEEEcCCCCCCC-CC------CCCCC-----ceeE-Eeeeeecc-ChHHHHHH-hhcCCC
Q 009358 127 LFWHAHISWLR----ATVYGPLVIFPKRGVPY-PF------PKPYK-----EVPI-IFGEWFNA-DTEAIINQ-SLQTGA 187 (537)
Q Consensus 127 ~wYH~h~~~~~----~Gl~G~liV~~~~~~~~-~~------~~~d~-----e~~l-~l~d~~~~-~~~~~~~~-~~~~g~ 187 (537)
||-+.-..... .++ +++-........ +. +..+. .... .+...... ........ ......
T Consensus 298 y~ira~~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 375 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ 375 (574)
T ss_pred EEEEEEccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEeccc
Confidence 99876443321 232 444432211100 00 00000 0000 00000000 00000000 000000
Q ss_pred C-CCCCCcEEEcCccCCCcc-----------------------------------cC--CCCcceEEEeCCcEEEEEEEe
Q 009358 188 G-PNVSDAYTINGLPGPLYN-----------------------------------CS--AKDTFKLKVKPGKTYLLRLIN 229 (537)
Q Consensus 188 ~-~~~~~~~liNG~~~~~~~-----------------------------------~~--~~~~~~~~v~~G~~~rlRliN 229 (537)
. ......+.+||.++.... |. ......+.++.|+.+.+=|.|
T Consensus 376 ~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (574)
T PLN02191 376 NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQN 455 (574)
T ss_pred ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEEC
Confidence 0 000124667776431000 00 011224567779999998888
Q ss_pred cC-----CCCceeeEEcCCeEEEEEecCC------------CcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEee
Q 009358 230 AA-----LNDELFFSIANHSVTVVDVDAI------------YIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 230 ~~-----~~~~~~~~i~gh~~~via~DG~------------~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
.. ....+.||+|||+|+||+..-. ...|...|++.+.++.-.-|.+++++| |-|.+|||.
T Consensus 456 ~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNP---G~Wl~HCHi 532 (574)
T PLN02191 456 ANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNP---GVWFFHCHI 532 (574)
T ss_pred CCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCC---EEEEEecCc
Confidence 75 2345669999999999965432 124778899999999999999999999 999999997
Q ss_pred ccCC
Q 009358 293 YATG 296 (537)
Q Consensus 293 ~~~~ 296 (537)
....
T Consensus 533 ~~Hl 536 (574)
T PLN02191 533 EPHL 536 (574)
T ss_pred hhhh
Confidence 5543
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.95 E-value=6e-09 Score=92.20 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=71.8
Q ss_pred CcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCc-----------CceEecEEEECCcceEEEEEEeCC
Q 009358 211 DTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI-----------KSFQTDILLITPGQTTNILLKAKP 279 (537)
Q Consensus 211 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-----------~P~~~d~v~l~pGeR~dv~v~~~~ 279 (537)
....+.++.|++++|+|+|.+... +.||+|||.|+|++.++... .|...|++.|.+|++..+.++++.
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~~-Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSMP-HPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTSS-EEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCCCCc-cceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 356899999999999999988764 45999999999999999873 688899999999999999999997
Q ss_pred CCCCceEEEEEeecc
Q 009358 280 SYPNATFLMSARPYA 294 (537)
Q Consensus 280 ~~~~g~y~i~~~~~~ 294 (537)
+ |.|.+|||.+.
T Consensus 111 ~---G~w~~HCHi~~ 122 (138)
T PF07731_consen 111 P---GPWLFHCHILE 122 (138)
T ss_dssp T---EEEEEEESSHH
T ss_pred c---eEEEEEEchHH
Confidence 6 99999999754
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.92 E-value=1.1e-07 Score=102.77 Aligned_cols=228 Identities=16% Similarity=0.172 Sum_probs=130.6
Q ss_pred ceEEEecCCEEEEEEEecC-CCCceeEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCCcc-ceEEecch
Q 009358 60 PRIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISGQRG-TLFWHAHI 133 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~----vtq~~i~PG~~~~y~f~~~~~~G-t~wYH~h~ 133 (537)
++|.|++|++.|+|+.|.. .....++..|..+.... .||.+- +....|.||||++.-+++.+.+| .||.-...
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa-~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE-AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE-eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 5899999999999999997 44555666665544332 699642 33566999999999999844445 79986532
Q ss_pred h--h-h-hcccee-eEEEcCCCCC----CCCCCCC-CCcee------EEeeeeeccC-----h----HHH----HHHhh-
Q 009358 134 S--W-L-RATVYG-PLVIFPKRGV----PYPFPKP-YKEVP------IIFGEWFNAD-----T----EAI----INQSL- 183 (537)
Q Consensus 134 ~--~-~-~~Gl~G-~liV~~~~~~----~~~~~~~-d~e~~------l~l~d~~~~~-----~----~~~----~~~~~- 183 (537)
. . . ..-+.| +|+-...... +.|.... ..+.. ..+. +.... . ... +....
T Consensus 296 ~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 374 (596)
T PLN00044 296 RFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIR-WNVTASGARPNPQGSFHYGDITVTDVYL 374 (596)
T ss_pred ccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhh-hccCCCcCCCCCcccceeeEEeeeeeee
Confidence 1 1 0 111222 3333322111 1111000 00000 0000 00000 0 000 00000
Q ss_pred cCCC-CCCC--CCcEEEcCccCCC----------cccCC-------C---------CcceEEEeCCcEEEEEEEecCCCC
Q 009358 184 QTGA-GPNV--SDAYTINGLPGPL----------YNCSA-------K---------DTFKLKVKPGKTYLLRLINAALND 234 (537)
Q Consensus 184 ~~g~-~~~~--~~~~liNG~~~~~----------~~~~~-------~---------~~~~~~v~~G~~~rlRliN~~~~~ 234 (537)
..+. ...+ .-.+.|||.++.. ++-++ . ....+.++.|++|-+-|-|... .
T Consensus 375 ~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~-~ 453 (596)
T PLN00044 375 LQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNAT-N 453 (596)
T ss_pred eccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCC-C
Confidence 0000 0000 0246778775431 01000 0 2334577789999998888653 3
Q ss_pred ceeeEEcCCeEEEEEecC-----------CCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 235 ELFFSIANHSVTVVDVDA-----------IYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 235 ~~~~~i~gh~~~via~DG-----------~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.+.||+|||.|+||+... +++.|...|++.+.+|.-.-|.+++|++ |-|.||||..
T Consensus 454 ~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNP---G~W~lHCH~~ 520 (596)
T PLN00044 454 VQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNA---GIWNLRVENL 520 (596)
T ss_pred CCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCC---EEehhhccCc
Confidence 556999999999996544 2335888999999999999999999999 9999999953
No 40
>PRK02710 plastocyanin; Provisional
Probab=98.66 E-value=3e-07 Score=78.88 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=53.9
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhhcc
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT 139 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~~G 139 (537)
+.|++++||+| +++|....++++.+.|.... . -+...+.||++++|.|.. +|+|-|+|-.| ...|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~~--~-------~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H-~~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAKEL--S-------HKDLAFAPGESWEETFSE---AGTYTYYCEPH-RGAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCccc--c-------ccccccCCCCEEEEEecC---CEEEEEEcCCC-ccCC
Confidence 79999999985 56788777888877653210 0 011247899999999973 89999999732 2379
Q ss_pred ceeeEEEc
Q 009358 140 VYGPLVIF 147 (537)
Q Consensus 140 l~G~liV~ 147 (537)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.64 E-value=8.1e-08 Score=80.52 Aligned_cols=88 Identities=13% Similarity=0.172 Sum_probs=47.2
Q ss_pred cCccEEEEEEEEEEEEeecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccc
Q 009358 26 ASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQ 105 (537)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq 105 (537)
.+.....++++++... .| ..|+++.|++|+|+++|.....+.+...++...
T Consensus 17 ~~~~~~v~I~~~~~~f---------------~P-~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~------------- 67 (104)
T PF13473_consen 17 AAAAQTVTITVTDFGF---------------SP-STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS------------- 67 (104)
T ss_dssp -------------EEE---------------ES--EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------
T ss_pred ccccccccccccCCeE---------------ec-CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------
Confidence 4455566666655422 23 599999999999999999877766666553321
Q ss_pred cccCCCCeEEEEEEeCCCccceEEecchhhhhccceeeEEE
Q 009358 106 CPIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVYGPLVI 146 (537)
Q Consensus 106 ~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~~Gl~G~liV 146 (537)
..|.||++.++.|.. .++|+|=|+|..+. . |.|-|+|
T Consensus 68 ~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~--~-m~G~liV 104 (104)
T PF13473_consen 68 KVLPPGETATVTFTP-LKPGEYEFYCTMHP--N-MKGTLIV 104 (104)
T ss_dssp EEE-TT-EEEEEEEE--S-EEEEEB-SSS---T-TB-----
T ss_pred EEECCCCEEEEEEcC-CCCEEEEEEcCCCC--c-ceecccC
Confidence 358999999999985 89999999999776 2 7777775
No 42
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=5.6e-06 Score=88.71 Aligned_cols=244 Identities=14% Similarity=0.122 Sum_probs=136.5
Q ss_pred eEEEEEcCcCC-C----ceEEEecCCEEEEEEEecC-CCCceeEecCccccCCCCCCCC---Cccc-ccccCCCCeEEEE
Q 009358 48 KSIITVNGQFP-G----PRIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADGP---AYIT-QCPIQTGQSYVYN 117 (537)
Q Consensus 48 ~~~~~~NG~~P-g----P~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv---~~vt-q~~i~PG~~~~y~ 117 (537)
-...+|||+-. . +++.+++|++.++|+.|.. .....+..-|..+.... .||+ |..+ -.-|.|||++++-
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe-~Dg~y~~p~~~~~l~i~~GQ~~~vL 270 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVE-VDGAYTKPFTTDSLDIHPGQTYSVL 270 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEE-ecceEEeeeeeceEEEcCCcEEEEE
Confidence 46799999862 1 6899999999999999985 33333333333333222 6884 3322 2458999999999
Q ss_pred EEeCCCccceEEecchhhhhc----cceeeEEEcCCCCC---CC--C---CCC--CCCceeEEeee---eeccChH----
Q 009358 118 FTISGQRGTLFWHAHISWLRA----TVYGPLVIFPKRGV---PY--P---FPK--PYKEVPIIFGE---WFNADTE---- 176 (537)
Q Consensus 118 f~~~~~~Gt~wYH~h~~~~~~----Gl~G~liV~~~~~~---~~--~---~~~--~d~e~~l~l~d---~~~~~~~---- 176 (537)
.++.+.++.||.-.....+.. -+.+..+++-.... .. + ... .+....+-... ++.....
T Consensus 271 vtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~ 350 (563)
T KOG1263|consen 271 LTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPV 350 (563)
T ss_pred EeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccC
Confidence 998777888998766543321 22333333322210 00 0 000 00000000000 0000000
Q ss_pred --HHHHHhh---------cCCC-CCCCCCcEEEcCccC---------------------CCcccCC----------CCcc
Q 009358 177 --AIINQSL---------QTGA-GPNVSDAYTINGLPG---------------------PLYNCSA----------KDTF 213 (537)
Q Consensus 177 --~~~~~~~---------~~g~-~~~~~~~~liNG~~~---------------------~~~~~~~----------~~~~ 213 (537)
....... .... .......+.||+.+. ..+.|.. ....
T Consensus 351 P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~ 430 (563)
T KOG1263|consen 351 PQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTS 430 (563)
T ss_pred CCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccce
Confidence 0000000 0000 000011233444321 0011111 1234
Q ss_pred eEEEeCCcEEEEEEEecCCCCc--eeeEEcCCeEEEEEecCCC-------------cCceEecEEEECCcceEEEEEEeC
Q 009358 214 KLKVKPGKTYLLRLINAALNDE--LFFSIANHSVTVVDVDAIY-------------IKSFQTDILLITPGQTTNILLKAK 278 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~--~~~~i~gh~~~via~DG~~-------------v~P~~~d~v~l~pGeR~dv~v~~~ 278 (537)
.++++-+..+-+=|-|.+...+ +.+|+|||.|+||+.+... ..|...|++.|.||.-..|.+.++
T Consensus 431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad 510 (563)
T KOG1263|consen 431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD 510 (563)
T ss_pred EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC
Confidence 5788888888888888874432 4579999999999993321 246778999999999999999999
Q ss_pred CCCCCceEEEEEeeccC
Q 009358 279 PSYPNATFLMSARPYAT 295 (537)
Q Consensus 279 ~~~~~g~y~i~~~~~~~ 295 (537)
++ |-|.||||....
T Consensus 511 NP---G~W~~HCHie~H 524 (563)
T KOG1263|consen 511 NP---GVWLMHCHIEDH 524 (563)
T ss_pred CC---cEEEEEEecHHH
Confidence 99 999999997544
No 43
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.25 E-value=5.2e-06 Score=68.80 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=54.7
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcc--cccccCCCCeEEEEEEeCCCccceEEecchhhhh
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYI--TQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR 137 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~v--tq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~ 137 (537)
..|++++||+| +++|....++++.++........ .+..+.. +...+.||+++++.|.. +|+|.|||. ....
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~-~H~~ 89 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE-PHRG 89 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC-Cccc
Confidence 68999999986 55687767777777643211100 0001111 22347899999999873 899999998 2233
Q ss_pred ccceeeEEEc
Q 009358 138 ATVYGPLVIF 147 (537)
Q Consensus 138 ~Gl~G~liV~ 147 (537)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 7999999985
No 44
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.11 E-value=1.7e-05 Score=63.40 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=52.8
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhhcc
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT 139 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~~G 139 (537)
+.|++++||+| +++|....+++++++.-......+.. ..+.||+++++.|. ++|+|-|||-.+. .
T Consensus 11 ~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTFT---EAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEE--EEEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEECC---CCEEEEEEcCCCC---C
Confidence 78999999996 56788777888887643211111111 12578998888774 5899999998776 5
Q ss_pred ceeeEEEc
Q 009358 140 VYGPLVIF 147 (537)
Q Consensus 140 l~G~liV~ 147 (537)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 99999985
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.11 E-value=1.1e-05 Score=73.22 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=65.4
Q ss_pred eeEEEEEcCc------------CCCceEEEecCCEEEEEEEecCC-CCceeEecCccccCCCCCCCCCc----ccccccC
Q 009358 47 TKSIITVNGQ------------FPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAY----ITQCPIQ 109 (537)
Q Consensus 47 ~~~~~~~NG~------------~PgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~----vtq~~i~ 109 (537)
....++|||+ -.-|+|.+++|+++++||.|... ....++++|..+.... .||.+- +....|.
T Consensus 35 ~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via-~DG~~v~p~~~~~l~l~ 113 (159)
T PF00394_consen 35 IPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIA-ADGVPVEPYKVDTLVLA 113 (159)
T ss_dssp SCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEE-ETTEEEEEEEESBEEE-
T ss_pred CCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEee-eccccccccccceEEee
Confidence 4567899994 12389999999999999999985 4678888887655443 699652 3456699
Q ss_pred CCCeEEEEEEeCCCccceEEecc
Q 009358 110 TGQSYVYNFTISGQRGTLFWHAH 132 (537)
Q Consensus 110 PG~~~~y~f~~~~~~Gt~wYH~h 132 (537)
||||++..+++++.+|.||.++.
T Consensus 114 ~G~R~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 114 PGQRYDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp TTEEEEEEEEECSCSSEEEEEEE
T ss_pred CCeEEEEEEEeCCCCCeEEEEEe
Confidence 99999999998444999999994
No 46
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.03 E-value=1.9e-05 Score=65.50 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=53.1
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecC--ccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhh
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHG--IRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR 137 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG--~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~ 137 (537)
..|.+++||+| +++|....++++.+-- +...... ...-+.-....+.||+++++.|+ .+|+|.|+|-. ...
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~ 89 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADS-DYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYE 89 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGH-CHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGG
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccc-cccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Ccc
Confidence 79999999985 5677666666666532 1100000 00000002234789999999997 58999999984 344
Q ss_pred ccceeeEEEc
Q 009358 138 ATVYGPLVIF 147 (537)
Q Consensus 138 ~Gl~G~liV~ 147 (537)
+||.|.|+|+
T Consensus 90 ~GM~G~i~V~ 99 (99)
T PF00127_consen 90 AGMVGTIIVE 99 (99)
T ss_dssp TTSEEEEEEE
T ss_pred cCCEEEEEEC
Confidence 7999999985
No 47
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.99 E-value=2.9e-05 Score=83.07 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=68.3
Q ss_pred EEEeecCeeeEE--EEEcCcCCCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEE
Q 009358 39 QNVTRLCHTKSI--ITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVY 116 (537)
Q Consensus 39 ~~~~~~g~~~~~--~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y 116 (537)
..+.++|....+ .++.-.+--+.|+|++||+|+++|+|.....=.+ ||+..... |+ +.-+.||++.+.
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~sv 601 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASV 601 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEE
Confidence 345567755443 4454455335899999999999999964311111 55554321 11 124779999999
Q ss_pred EEEeCCCccceEEecch-hhh-hccceeeEEEcCC
Q 009358 117 NFTISGQRGTLFWHAHI-SWL-RATVYGPLVIFPK 149 (537)
Q Consensus 117 ~f~~~~~~Gt~wYH~h~-~~~-~~Gl~G~liV~~~ 149 (537)
.|++ +++|+|||||.. .+. -.+|.|-|+|+++
T Consensus 602 tF~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 602 TFTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 9996 899999999975 222 2799999999874
No 48
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=97.95 E-value=1.6e-05 Score=67.95 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=66.2
Q ss_pred CcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEE-EecCCCcCceEecEEEECCcceE
Q 009358 193 DAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVV-DVDAIYIKSFQTDILLITPGQTT 271 (537)
Q Consensus 193 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~v~P~~~d~v~l~pGeR~ 271 (537)
..+++||+. ..|+|+++.|+++++++.|... ....+|+||-.+.-- ..||.+-.+ .-.|.||+++
T Consensus 15 ~~~~~ng~~---------pGPtI~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~~ 80 (117)
T PF07732_consen 15 KVWTYNGQF---------PGPTIRVREGDTVRITVTNNLD-EPTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGESF 80 (117)
T ss_dssp EEEEETTBS---------SEEEEEEETTEEEEEEEEEESS-SGBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEEE
T ss_pred EEEEECCCC---------CCCEEEEEcCCeeEEEEEeccc-cccccccceeeeeeeeecCCccccc----ceeEEeecce
Confidence 689999984 4689999999999999999994 445689988554221 256654322 2348999999
Q ss_pred EEEEEeCCCCCCceEEEEEeecc
Q 009358 272 NILLKAKPSYPNATFLMSARPYA 294 (537)
Q Consensus 272 dv~v~~~~~~~~g~y~i~~~~~~ 294 (537)
+..+++++.+ |.||.|||...
T Consensus 81 ~Y~~~~~~~~--Gt~wYH~H~~~ 101 (117)
T PF07732_consen 81 TYEFTANQQA--GTYWYHSHVHG 101 (117)
T ss_dssp EEEEEESSCS--EEEEEEECSTT
T ss_pred eeeEeeeccc--cceeEeeCCCc
Confidence 9999999955 99999999643
No 49
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.64 E-value=0.00083 Score=61.37 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=72.4
Q ss_pred EEEEEcCcCCC-ceEEEecCCEEEEEEEecCCCCceeEec--Ccccc--CCCCCCCCC----c-----ccccccCCCCeE
Q 009358 49 SIITVNGQFPG-PRIVAREGDRLIIKVVNHVPNNISIHWH--GIRQL--LSGWADGPA----Y-----ITQCPIQTGQSY 114 (537)
Q Consensus 49 ~~~~~NG~~Pg-P~i~v~~Gd~v~v~v~N~l~~~~siH~H--G~~~~--~~~~~DGv~----~-----vtq~~i~PG~~~ 114 (537)
..+-|||..-| ++|.+-.|-+|.|+|+|...-++++-.- +-.+. ..-..||.- | .+-..|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 36789999877 7999999999999999986544443221 21111 111245511 1 112368899999
Q ss_pred EEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCC
Q 009358 115 VYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRG 151 (537)
Q Consensus 115 ~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~ 151 (537)
.-.|.. -++|+|||-|-.-+.. .||++-|+|...-.
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 877863 6799999999988776 89999999987643
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.64 E-value=0.0011 Score=59.36 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=71.1
Q ss_pred EEEEcCcCCC-ceEEEecCCEEEEEEEecCCCCceeEecCccccCCC------C-CCCCC----ccc----c-cccCCCC
Q 009358 50 IITVNGQFPG-PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSG------W-ADGPA----YIT----Q-CPIQTGQ 112 (537)
Q Consensus 50 ~~~~NG~~Pg-P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~------~-~DGv~----~vt----q-~~i~PG~ 112 (537)
.+-+||+..| ++|.+..|-+|.|+|+|....++++-. -+..++ + .||.. |.+ + ..|.+|+
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 3678999989 899999999999999999866655544 111111 1 35522 222 1 3467888
Q ss_pred eEEEEEEeCCCccceEEecchhhhh-ccceeeEEEcCCCC
Q 009358 113 SYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRG 151 (537)
Q Consensus 113 ~~~y~f~~~~~~Gt~wYH~h~~~~~-~Gl~G~liV~~~~~ 151 (537)
+..-.|. +-++|+|||-|-.-+.. +||+|-+||-..-.
T Consensus 151 s~sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 151 SRSGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred eeEEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 9666666 47999999999987655 99999999987643
No 51
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.32 E-value=0.0011 Score=56.71 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=54.6
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhhcc
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT 139 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~~G 139 (537)
-.|+|++||+ |+++|.....++++.-+.. .+ +|.- .....+|+++++.|. .+|+|-|+|-.|. .+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG---TLKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc---ccccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 3899999999 7788988778888776554 11 2221 233456788888886 3899999996541 269
Q ss_pred ceeeEEEcC
Q 009358 140 VYGPLVIFP 148 (537)
Q Consensus 140 l~G~liV~~ 148 (537)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 52
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.22 E-value=0.0018 Score=54.94 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=49.2
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEe-cCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhhc
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHW-HGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRA 138 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~-HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~~ 138 (537)
..|.|++||+|+....|. ++++.+ .++. -+|... ..-.+|+++++.|. .+|+|-|+|-.| ...
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF~---~~G~Y~Y~C~pH-~~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTVT---EEGVYGVKCTPH-YGM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEeC---CCEEEEEEcCCC-ccC
Confidence 689999999966665554 455444 2211 122211 11246777777774 689999999832 237
Q ss_pred cceeeEEEcCCC
Q 009358 139 TVYGPLVIFPKR 150 (537)
Q Consensus 139 Gl~G~liV~~~~ 150 (537)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999999864
No 53
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.15 E-value=0.0022 Score=57.10 Aligned_cols=86 Identities=15% Similarity=0.236 Sum_probs=55.9
Q ss_pred CCCcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCCe--EEEE-EecCCCcCceEecEEEECC
Q 009358 191 VSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHS--VTVV-DVDAIYIKSFQTDILLITP 267 (537)
Q Consensus 191 ~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~--~~vi-a~DG~~v~P~~~d~v~l~p 267 (537)
....|.+||... +.|+++.|+++++++.|......+.|.|+.+. +... ..||.... .+...+.+
T Consensus 40 ~~~~f~~~~~~~----------P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~---~~~~i~p~ 106 (148)
T TIGR03095 40 SMYSFEIHDLKN----------PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFV---AGTGFLPP 106 (148)
T ss_pred CceeEEecCCCC----------CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCcc---ccCcccCC
Confidence 346889999753 68999999999999999976333445554332 2111 34664321 12222222
Q ss_pred ---cce--EEEEEEeCCCCCCceEEEEEee
Q 009358 268 ---GQT--TNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 268 ---GeR--~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
|+. .++.++++++ |.||++|+.
T Consensus 107 ~~~g~~~~~~~tf~f~~a---GtywyhC~~ 133 (148)
T TIGR03095 107 PKSGKFGYTDFTYHFSTA---GTYWYLCTY 133 (148)
T ss_pred CCCCccceeEEEEECCCC---eEEEEEcCC
Confidence 434 4888888866 999999995
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.05 E-value=0.003 Score=54.57 Aligned_cols=61 Identities=25% Similarity=0.200 Sum_probs=50.5
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
+..++|++|+++.|++.|.... .+.+.++++. -...|.|||+..+.+.++++ |.|+++|.
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i~~~g----------------is~~I~pGet~TitF~adKp---G~Y~y~C~ 119 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPI-SEGFSIDAYG----------------ISEVIKAGETKTISFKADKA---GAFTIWCQ 119 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCC-ccceEECCCC----------------cceEECCCCeEEEEEECCCC---EEEEEeCC
Confidence 4689999999999999999874 4446666542 15678999999999999998 99999998
Q ss_pred e
Q 009358 292 P 292 (537)
Q Consensus 292 ~ 292 (537)
+
T Consensus 120 ~ 120 (135)
T TIGR03096 120 L 120 (135)
T ss_pred C
Confidence 5
No 55
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.98 E-value=0.0049 Score=52.18 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=49.4
Q ss_pred ceEEEecCCEEEEEEEecC-CCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhhc
Q 009358 60 PRIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRA 138 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~~ 138 (537)
..|.|++||+|+ ++|+. ..++++..-+ ...|.-+ .....||++|++.|. ++|+|-|+|-.| ...
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f~s~-----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH-~~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDLDES-----ERVSEEGTTYEHTFE---EPGIYLYVCVPH-EAL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCCcccc-----ccccCCCCEEEEEec---CCcEEEEEccCC-CCC
Confidence 689999999955 77543 4566655321 1111101 123578999999995 589999999754 236
Q ss_pred cceeeEEEc
Q 009358 139 TVYGPLVIF 147 (537)
Q Consensus 139 Gl~G~liV~ 147 (537)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 999999985
No 56
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.50 E-value=0.011 Score=49.32 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=43.0
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
+..+++++|++++|.+.|.+... +.|.+++. .....|.||++..+.|.+.++ |.|.+.|.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~----------------~~~~~l~~g~~~~~~f~~~~~---G~y~~~C~ 93 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRP-HEFVIPDL----------------GISKVLPPGETATVTFTPLKP---GEYEFYCT 93 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS--EEEEEGGG----------------TEEEEE-TT-EEEEEEEE-S----EEEEEB-S
T ss_pred cCEEEEcCCCeEEEEEEECCCCc-EEEEECCC----------------ceEEEECCCCEEEEEEcCCCC---EEEEEEcC
Confidence 45899999999999999998765 44666551 123779999999999988877 99999998
Q ss_pred e
Q 009358 292 P 292 (537)
Q Consensus 292 ~ 292 (537)
+
T Consensus 94 ~ 94 (104)
T PF13473_consen 94 M 94 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 57
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.63 E-value=0.3 Score=50.01 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=51.5
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCC-cccccccCCCCeEEEEEEeCCCccceEEecchhhhhc
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPA-YITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRA 138 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~-~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~~ 138 (537)
..+.|..|+ +++.|+|....++..-.- +|+- .-....|.||.+.++.+++ .+|+|-|+|-.+ .
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~---~ 107 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL---T 107 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCcC---C
Confidence 689999996 999999997666432111 1110 0011369999999988776 599999999432 3
Q ss_pred cceeeEEEcCCC
Q 009358 139 TVYGPLVIFPKR 150 (537)
Q Consensus 139 Gl~G~liV~~~~ 150 (537)
.+.|.|+|....
T Consensus 108 ~~~g~l~Vtg~~ 119 (375)
T PRK10378 108 NPKGKLIVKGEA 119 (375)
T ss_pred CCCceEEEeCCC
Confidence 458999998653
No 58
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=94.26 E-value=0.42 Score=44.01 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=64.6
Q ss_pred CcEEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEEcCC----eEEEEEecCCCc-----CceEecEE
Q 009358 193 DAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANH----SVTVVDVDAIYI-----KSFQTDIL 263 (537)
Q Consensus 193 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh----~~~via~DG~~v-----~P~~~d~v 263 (537)
+.+-+||... ....+-+..|-++.++++|.+...|=.+-+..- ..-.+..||.-+ .+-....-
T Consensus 74 ~~~nfnGts~--------G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~ 145 (196)
T PF06525_consen 74 NPFNFNGTSN--------GQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSN 145 (196)
T ss_pred CceeeecccC--------CcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccC
Confidence 3566788643 356899999999999999998766532222221 233567777544 12112233
Q ss_pred EECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEe
Q 009358 264 LITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYE 312 (537)
Q Consensus 264 ~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~ 312 (537)
-|.+||+....+..-.+ |.|||.|....... ....+.|...
T Consensus 146 GI~~G~s~~~~~~~l~a---G~YwlvC~ipGHA~-----sGMw~~LiVs 186 (196)
T PF06525_consen 146 GISSGQSASGVYNDLPA---GYYWLVCGIPGHAE-----SGMWGVLIVS 186 (196)
T ss_pred CccCCceeeEEEccCCC---ceEEEEccCCChhh-----cCCEEEEEEe
Confidence 56799999987754344 99999998533321 3445555543
No 59
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.24 E-value=0.31 Score=41.75 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=50.0
Q ss_pred CceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecch-hhhh
Q 009358 59 GPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR 137 (537)
Q Consensus 59 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~-~~~~ 137 (537)
.+.|.+..|++|++++++. +.-+++...++.. +.-+-||+.-...|.+ +++|+|++.|.. .+..
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~-------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI-------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE-------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc-------------ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 3799999999999999996 3333333322221 2346789999999997 899999999974 2333
Q ss_pred -ccceeeEEE
Q 009358 138 -ATVYGPLVI 146 (537)
Q Consensus 138 -~Gl~G~liV 146 (537)
.-|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 567776665
No 60
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.44 Score=41.97 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=62.3
Q ss_pred CCCceEEEecCCEEEEEEEecCC--CCcee---------EecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCcc
Q 009358 57 FPGPRIVAREGDRLIIKVVNHVP--NNISI---------HWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRG 125 (537)
Q Consensus 57 ~PgP~i~v~~Gd~v~v~v~N~l~--~~~si---------H~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~G 125 (537)
+++-.+.++.|.+++..+.|... ...++ --|..... -+.+- .....-+.||++-+..|.. .++|
T Consensus 60 f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~---Dme~d-~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 60 FKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILAD---DMEHD-DPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred cCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCC---ccccC-CcceeEeCCCCcEEEEEEe-cCCc
Confidence 56679999999999999999753 11111 11222222 13331 1122458999999999997 7899
Q ss_pred ceEEecchhhhh-ccceeeEEEcC
Q 009358 126 TLFWHAHISWLR-ATVYGPLVIFP 148 (537)
Q Consensus 126 t~wYH~h~~~~~-~Gl~G~liV~~ 148 (537)
.|=.-|-.-+.+ +||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999988 89999998864
No 61
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=93.96 E-value=0.18 Score=41.54 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=41.8
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCc-eEecEEEECCcceEEEEEEeCCCCCCceEEEEE
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS-FQTDILLITPGQTTNILLKAKPSYPNATFLMSA 290 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P-~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~ 290 (537)
+..+++++|++|+|. |.+.. .+.+.++...+..-+ ....+ ..-+.+.+.||+++++.+.. + |.|.++|
T Consensus 16 P~~i~v~~G~~V~~~--N~~~~-~H~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pG~t~~~tF~~--~---G~y~y~C 84 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKGG-PHNVVFDEDAVPAGV---KELAKSLSHKDLLNSPGESYEVTFST--P---GTYTFYC 84 (99)
T ss_pred CCEEEECCCCEEEEE--ECCCC-CceEEECCCCCccch---hhhcccccccccccCCCCEEEEEeCC--C---EEEEEEc
Confidence 457999999988765 76542 233444322111000 00011 12256789999999996653 4 9999999
Q ss_pred e
Q 009358 291 R 291 (537)
Q Consensus 291 ~ 291 (537)
.
T Consensus 85 ~ 85 (99)
T TIGR02656 85 E 85 (99)
T ss_pred C
Confidence 7
No 62
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.90 E-value=0.31 Score=41.46 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=54.7
Q ss_pred ceEEEec-CCEEEEEEEecCCCCceeEecC----------------ccccCCCCCCCCCc-----cc-ccccCCCCeEEE
Q 009358 60 PRIVARE-GDRLIIKVVNHVPNNISIHWHG----------------IRQLLSGWADGPAY-----IT-QCPIQTGQSYVY 116 (537)
Q Consensus 60 P~i~v~~-Gd~v~v~v~N~l~~~~siH~HG----------------~~~~~~~~~DGv~~-----vt-q~~i~PG~~~~y 116 (537)
..|.|.. |.+|+|+|+|....+...--|- +..-. ..|=+|- +. -.-|.|||+-+.
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~--~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGA--DNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhccc--ccCccCCCCcceEEEccccCCCceEEE
Confidence 5899998 4789999999854333322331 11000 0111221 00 134889999999
Q ss_pred EEEeCC-Cccc-eEEecchhhhhccceeeEE
Q 009358 117 NFTISG-QRGT-LFWHAHISWLRATVYGPLV 145 (537)
Q Consensus 117 ~f~~~~-~~Gt-~wYH~h~~~~~~Gl~G~li 145 (537)
.|+++. ++|+ |-|-|-.-+....|.|.|.
T Consensus 94 tF~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred EEECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 999853 6786 9999998887778888775
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.86 E-value=0.11 Score=45.62 Aligned_cols=75 Identities=15% Similarity=0.270 Sum_probs=55.0
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEc------CCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCce
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIA------NHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNAT 285 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~------gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~ 285 (537)
...+.++.|+++|+-+-|.+...+- |-++ +|.-..+.+| ..+-....++.|.||+...+.+++.++ |.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~he-f~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~~---g~ 135 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHE-FTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTGA---GK 135 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEE-EeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecCC---cc
Confidence 4468999999999999999865554 4444 2222223333 112244579999999999999999988 99
Q ss_pred EEEEEee
Q 009358 286 FLMSARP 292 (537)
Q Consensus 286 y~i~~~~ 292 (537)
|.+.|..
T Consensus 136 ye~~C~i 142 (158)
T COG4454 136 YEFACNI 142 (158)
T ss_pred EEEEecC
Confidence 9999985
No 64
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.95 E-value=0.6 Score=50.75 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=45.5
Q ss_pred cceEEEeCCcEEEEEEEecCC--CCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEE
Q 009358 212 TFKLKVKPGKTYLLRLINAAL--NDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMS 289 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~ 289 (537)
...++|+.|+.|+|++.|.-. ...+.|.|.++.. .+.+.||+...+.++++++ |.|++.
T Consensus 554 p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------~~dv~PG~t~svtF~adkP---Gvy~~~ 614 (635)
T PRK02888 554 LREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------NMEVAPQATASVTFTADKP---GVYWYY 614 (635)
T ss_pred CceEEecCCCEEEEEEEeCCcccccccceeecccCc----------------cEEEcCCceEEEEEEcCCC---EEEEEE
Confidence 345777778888888777533 2234455544432 2467799999999999998 999999
Q ss_pred Eeecc
Q 009358 290 ARPYA 294 (537)
Q Consensus 290 ~~~~~ 294 (537)
|.-++
T Consensus 615 CtefC 619 (635)
T PRK02888 615 CTWFC 619 (635)
T ss_pred CCccc
Confidence 99654
No 65
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=92.18 E-value=0.81 Score=43.04 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=55.8
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecch-hhhh-
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR- 137 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~-~~~~- 137 (537)
..|.+..|+.|++++++.. + + ||.....- |+ |.-+-||..-+..|++ +++|+|...|.. .|..
T Consensus 117 ~~l~vp~g~~v~~~~ts~D---V-~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD---V-I--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc---h-h--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 6899999999999999863 1 2 55554321 21 2335689999999986 899999999875 3333
Q ss_pred ccceeeEEEcCCC
Q 009358 138 ATVYGPLVIFPKR 150 (537)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (537)
..|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 7899999988764
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.27 E-value=2.5 Score=36.11 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=47.1
Q ss_pred ceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEee
Q 009358 213 FKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 213 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
..+.++.|++++|++.+.- -.+.|.|.+..+. +.+-||+.-.+.++++++ |.|.++|.-
T Consensus 46 ~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~~---G~y~~~C~e 104 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED--VIHSFWIPELGIK----------------MDAIPGRTNSVTFTPDKP---GTYYGQCAE 104 (120)
T ss_dssp SEEEEETTSEEEEEEEESS--S-EEEEETTCTEE----------------EEEBTTCEEEEEEEESSS---EEEEEEE-S
T ss_pred ceecccccceEeEEEEcCC--ccccccccccCcc----------------cccccccceeeeeeeccC---CcEEEcCcc
Confidence 4799999999999998854 4556777765543 345689999999999888 999999995
Q ss_pred ccC
Q 009358 293 YAT 295 (537)
Q Consensus 293 ~~~ 295 (537)
+..
T Consensus 105 ~CG 107 (120)
T PF00116_consen 105 YCG 107 (120)
T ss_dssp SSS
T ss_pred ccC
Confidence 443
No 67
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=87.72 E-value=1.7 Score=35.66 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=42.0
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCc--Cce----EecEEEECCcceEEEEEEeCCCCCCce
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI--KSF----QTDILLITPGQTTNILLKAKPSYPNAT 285 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v--~P~----~~d~v~l~pGeR~dv~v~~~~~~~~g~ 285 (537)
+..+++++|++++| +|.... +|++.+.. |+... +.. .-.+..+.+|+.+++-++ ++ |.
T Consensus 16 P~~i~V~~G~tV~~--~n~~~~--------~Hnv~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~~---G~ 79 (99)
T PF00127_consen 16 PSEITVKAGDTVTF--VNNDSM--------PHNVVFVA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--KP---GT 79 (99)
T ss_dssp SSEEEEETTEEEEE--EEESSS--------SBEEEEET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--SS---EE
T ss_pred CCEEEECCCCEEEE--EECCCC--------CceEEEec-ccccccccccccCccccceecCCCCEEEEEeC--CC---eE
Confidence 56899999998765 554322 23443333 33211 111 115778999999999887 44 99
Q ss_pred EEEEEee
Q 009358 286 FLMSARP 292 (537)
Q Consensus 286 y~i~~~~ 292 (537)
|.+.|.+
T Consensus 80 y~y~C~P 86 (99)
T PF00127_consen 80 YEYYCTP 86 (99)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 9999974
No 68
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=87.04 E-value=5.6 Score=33.97 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=51.8
Q ss_pred cceEEEeC-CcEEEEEEEecCCCCc----eeeEE-cCCeEEEEEe-------cCCCcCc----eEecEEEECCcceEEEE
Q 009358 212 TFKLKVKP-GKTYLLRLINAALNDE----LFFSI-ANHSVTVVDV-------DAIYIKS----FQTDILLITPGQTTNIL 274 (537)
Q Consensus 212 ~~~~~v~~-G~~~rlRliN~~~~~~----~~~~i-~gh~~~via~-------DG~~v~P----~~~d~v~l~pGeR~dv~ 274 (537)
..+|+|++ ++.+.+.|-|.|...- +.+-| ..-.++-|+. |-.|+.+ ....+=+|++||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 34799998 5899999999986441 22222 1122222222 3345533 23467789999999999
Q ss_pred EEeCCCCCCceEEEEEee
Q 009358 275 LKAKPSYPNATFLMSARP 292 (537)
Q Consensus 275 v~~~~~~~~g~y~i~~~~ 292 (537)
++++.-.+|++|.+.|..
T Consensus 95 F~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EECCCCCCCCcceEEEcC
Confidence 998742223579999973
No 69
>PRK02710 plastocyanin; Provisional
Probab=85.35 E-value=3.3 Score=35.29 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=39.9
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
+..+++++|++++| +|.+... +.+.+++ . +......+.+.+|+++++.++. + |.|.+.|.
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~~~-H~v~~~~----------~--~~~~~~~~~~~pg~t~~~tF~~--~---G~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKLAP-HNAVFDG----------A--KELSHKDLAFAPGESWEETFSE--A---GTYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCCCC-ceEEecC----------C--ccccccccccCCCCEEEEEecC--C---EEEEEEcC
Confidence 45799999998776 5765332 2344432 1 1111234678999999977754 4 99999997
Q ss_pred e
Q 009358 292 P 292 (537)
Q Consensus 292 ~ 292 (537)
.
T Consensus 106 ~ 106 (119)
T PRK02710 106 P 106 (119)
T ss_pred C
Confidence 3
No 70
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.94 E-value=3.1 Score=40.33 Aligned_cols=77 Identities=10% Similarity=-0.004 Sum_probs=56.9
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecch-hhhh-
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR- 137 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~-~~~~- 137 (537)
..|.+..|.+|+++++-. +.-++....++.. |.-.-||...++.+++ +++|+|.-+|+. .|..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~-------------k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG-------------KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCc-------------eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999998876 3333333333221 2235678999999996 999999999985 3444
Q ss_pred ccceeeEEEcCCCC
Q 009358 138 ATVYGPLVIFPKRG 151 (537)
Q Consensus 138 ~Gl~G~liV~~~~~ 151 (537)
..|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 79999999998864
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=84.16 E-value=1.9 Score=34.09 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=21.4
Q ss_pred CCCCCCCc---ccccccCCCCeEEEEEEeCCC---ccceEE
Q 009358 95 GWADGPAY---ITQCPIQTGQSYVYNFTISGQ---RGTLFW 129 (537)
Q Consensus 95 ~~~DGv~~---vtq~~i~PG~~~~y~f~~~~~---~Gt~wY 129 (537)
.|++|-.. +.+..|.||++.+|++..+.. +|+|..
T Consensus 40 rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 40 RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 36777543 335569999999999999733 688853
No 72
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=83.65 E-value=2 Score=44.35 Aligned_cols=77 Identities=12% Similarity=0.157 Sum_probs=51.3
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecch-hhhh-
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR- 137 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~-~~~~- 137 (537)
-++.|++||+|++.++|-....--+|-.-+.+. |+. --+.|-++-.|.|.+ +.+|.+||.|-- ....
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~thgfv~p~~------~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTHGFVIPNY------GVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccceeeeccC------ceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 378899999999999987644433333323221 221 237888999999997 899999998742 2222
Q ss_pred ccceeeEEEc
Q 009358 138 ATVYGPLVIF 147 (537)
Q Consensus 138 ~Gl~G~liV~ 147 (537)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 4556667775
No 73
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=83.00 E-value=5.3 Score=31.54 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=38.5
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
++.+++++|+++.| +|..... +.+.+. +|.. .........+.+|+.+++.+ +++ |.|.++|.
T Consensus 10 P~~i~v~~GdtVt~--~N~d~~~-Hnv~~~---------~g~~-~~~~~~~~~~~~g~~~~~tf--~~~---G~y~y~C~ 71 (83)
T TIGR02657 10 TPELHVKVGDTVTW--INREAMP-HNVHFV---------AGVL-GEAALKGPMMKKEQAYSLTF--TEA---GTYDYHCT 71 (83)
T ss_pred CCEEEECCCCEEEE--EECCCCC-ccEEec---------CCCC-ccccccccccCCCCEEEEEC--CCC---EEEEEEcC
Confidence 56899999999887 5654322 223222 2211 01112234568899999755 555 99999998
Q ss_pred e
Q 009358 292 P 292 (537)
Q Consensus 292 ~ 292 (537)
.
T Consensus 72 ~ 72 (83)
T TIGR02657 72 P 72 (83)
T ss_pred C
Confidence 4
No 74
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=82.45 E-value=5.4 Score=34.40 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=42.8
Q ss_pred CcceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEE
Q 009358 211 DTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSA 290 (537)
Q Consensus 211 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~ 290 (537)
++..+++++|++|+| +|.... +|+... .++. .|...+.+.-.+++.+.+-|+. + |.|.+.|
T Consensus 52 ~PA~v~v~pGDTVtw--~~~d~~--------~Hnv~~--~~~~--~~~g~~~~~~~~~~s~~~Tfe~--~---G~Y~Y~C 112 (128)
T COG3794 52 EPAEVTVKPGDTVTW--VNTDSV--------GHNVTA--VGGM--DPEGSGTLKAGINESFTHTFET--P---GEYTYYC 112 (128)
T ss_pred cCcEEEECCCCEEEE--EECCCC--------CceEEE--eCCC--CcccccccccCCCcceEEEecc--c---ceEEEEe
Confidence 356899999998877 555432 333333 3332 4555667777778988888865 4 9999999
Q ss_pred ee
Q 009358 291 RP 292 (537)
Q Consensus 291 ~~ 292 (537)
.+
T Consensus 113 ~P 114 (128)
T COG3794 113 TP 114 (128)
T ss_pred cc
Confidence 85
No 75
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=79.57 E-value=8.5 Score=30.42 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=21.2
Q ss_pred eEecEEEECCcceEEEEEEeCCCCC-CceEEEEE
Q 009358 258 FQTDILLITPGQTTNILLKAKPSYP-NATFLMSA 290 (537)
Q Consensus 258 ~~~d~v~l~pGeR~dv~v~~~~~~~-~g~y~i~~ 290 (537)
+......|.|||...+..+.+.... .|.|.+.+
T Consensus 49 Qal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 49 QALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp ---EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred heeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 3456889999999999999987531 38998764
No 76
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=77.36 E-value=18 Score=30.72 Aligned_cols=74 Identities=8% Similarity=0.176 Sum_probs=43.4
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
+..+++++|++|+|...+.+ |... +.++. .|...+.+.-.+|+.+++-| +++ |.|.+.|.
T Consensus 14 P~~v~V~~GdTV~f~n~d~~-----------Hnv~--~~~~~--~p~g~~~~~s~~g~~~~~tF--~~~---G~Y~Y~C~ 73 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKG-----------HNVE--TIKGM--IPEGAEAFKSKINEEYTVTV--TEE---GVYGVKCT 73 (116)
T ss_pred CCEEEECCCCEEEEEECCCC-----------eeEE--EccCC--CcCCcccccCCCCCEEEEEe--CCC---EEEEEEcC
Confidence 45799999999999777653 2221 11110 12112223334566666555 565 99999998
Q ss_pred eccCCCCCCCCcceEEEEEEe
Q 009358 292 PYATGQGTFDNSTVAGILEYE 312 (537)
Q Consensus 292 ~~~~~~~~~~~~~~~ail~Y~ 312 (537)
+- ......+.|...
T Consensus 74 pH-------~~~GM~G~V~Vg 87 (116)
T TIGR02375 74 PH-------YGMGMVALIQVG 87 (116)
T ss_pred CC-------ccCCCEEEEEEC
Confidence 42 224567777774
No 77
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=77.33 E-value=9.6 Score=35.75 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=44.5
Q ss_pred ceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEee
Q 009358 213 FKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 213 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
..+.++.|+.+||++-+... .+.|.+.+. .-.+..-||..-.+.++++++ |.|..+|.-
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV--~Hsf~ip~~----------------~~k~da~PG~~~~~~~~~~~~---G~y~~~c~e 175 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV--IHSFWVPEL----------------GGKIDAIPGQYNALWFNADEP---GVYYGYCAE 175 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch--hhccccccc----------------CceEEecCCcEEEEEEEeCCC---EEEEEEehh
Confidence 36899999999999887553 223333322 223456789999999999988 999999996
Q ss_pred cc
Q 009358 293 YA 294 (537)
Q Consensus 293 ~~ 294 (537)
++
T Consensus 176 ~c 177 (201)
T TIGR02866 176 LC 177 (201)
T ss_pred hC
Confidence 44
No 78
>COG1470 Predicted membrane protein [Function unknown]
Probab=76.76 E-value=1.1e+02 Score=32.46 Aligned_cols=178 Identities=12% Similarity=0.242 Sum_probs=103.4
Q ss_pred EEEecCCE--EEEEEEecC--CCCceeEecCccc-cCCCCCCCCCcccccccCCCCeEEEEEEeC----CCccceEEecc
Q 009358 62 IVAREGDR--LIIKVVNHV--PNNISIHWHGIRQ-LLSGWADGPAYITQCPIQTGQSYVYNFTIS----GQRGTLFWHAH 132 (537)
Q Consensus 62 i~v~~Gd~--v~v~v~N~l--~~~~siH~HG~~~-~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~----~~~Gt~wYH~h 132 (537)
+.+.++++ +.|++.|.. ++...+-.-|+.- ....+.+|--.++...+.||++.+....+- -.+|+|
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y----- 352 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY----- 352 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce-----
Confidence 55556665 667777876 4455566666542 112234776678888899999999988872 234555
Q ss_pred hhhhhccceeeEEEcCCCCCCCCCCCCCCceeEEeeeeeccChHHHHHHhhcCCCCCCCCCcEEEcCccCCCcccCCCCc
Q 009358 133 ISWLRATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDT 212 (537)
Q Consensus 133 ~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~ 212 (537)
-..|+-...+ . ..++..+-+.- .|. .....-+-||.
T Consensus 353 ---------nv~I~A~s~s-~-----v~~e~~lki~~---------------~g~--~~~~v~l~~g~------------ 388 (513)
T COG1470 353 ---------NVTITASSSS-G-----VTRELPLKIKN---------------TGS--YNELVKLDNGP------------ 388 (513)
T ss_pred ---------eEEEEEeccc-c-----ceeeeeEEEEe---------------ccc--cceeEEccCCc------------
Confidence 3333333221 1 13344444421 110 00122333443
Q ss_pred ceEEEeCCc--EEEEEEEecCCCC--ceeeEEcCCeEEEEEecCCCcCceEecEEEECCcce--EEEEEEeCCCCCCceE
Q 009358 213 FKLKVKPGK--TYLLRLINAALND--ELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQT--TNILLKAKPSYPNATF 286 (537)
Q Consensus 213 ~~~~v~~G~--~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR--~dv~v~~~~~~~~g~y 286 (537)
..+++++|+ ..+++|-|.|... ...+.+++-+=|-+.+|+.. ++. |.||+| +++-++++.....|.|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~-----I~s--L~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDEST-----IPS--LEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECccc-----ccc--cCCCCcceEEEEEEcCCCCCCCcE
Confidence 367888885 7789999999554 35677777766777887763 333 445555 4555556655445899
Q ss_pred EEEEeeccC
Q 009358 287 LMSARPYAT 295 (537)
Q Consensus 287 ~i~~~~~~~ 295 (537)
.+......+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 888775444
No 79
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=73.03 E-value=14 Score=31.26 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=38.3
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
+..+++++|++|+|.--..+ .. |+. .+.++.. .....+.+.+|++|++-|+ ++ |.|.+.|.
T Consensus 41 P~~ltV~~GdTVtw~~~~d~--~~-------HnV--~s~~~~~---f~s~~~~~~~G~t~s~Tf~--~~---G~Y~Y~C~ 101 (115)
T TIGR03102 41 PPAIRVDPGTTVVWEWTGEG--GG-------HNV--VSDGDGD---LDESERVSEEGTTYEHTFE--EP---GIYLYVCV 101 (115)
T ss_pred CCEEEECCCCEEEEEECCCC--CC-------EEE--EECCCCC---ccccccccCCCCEEEEEec--CC---cEEEEEcc
Confidence 56799999999987432212 11 222 2223221 1223445678999998884 45 99999998
Q ss_pred e
Q 009358 292 P 292 (537)
Q Consensus 292 ~ 292 (537)
+
T Consensus 102 p 102 (115)
T TIGR03102 102 P 102 (115)
T ss_pred C
Confidence 4
No 80
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=69.30 E-value=74 Score=29.65 Aligned_cols=75 Identities=8% Similarity=-0.090 Sum_probs=49.0
Q ss_pred eEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecch-hhhh-c
Q 009358 61 RIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR-A 138 (537)
Q Consensus 61 ~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~-~~~~-~ 138 (537)
.+++..|..|+++++-.. .- |+...+.- ++.+. .-||..-+..|.+ +++|+|.-.|.. .|.. .
T Consensus 117 ~l~lp~g~~v~~~ltS~D-Vi-----Hsf~vp~l-------~~k~d-~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~ 181 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-VI-----HSFSVPDL-------NLKMD-AIPGRINHLFFCP-DRHGVFVGYCSELCGVGHS 181 (194)
T ss_pred eEEEeCCCEEEeeeecCc-cc-----cceecccc-------Cceee-cCCCceEEEEEEc-CCCEEEEEEeehhhCcCcc
Confidence 477888888888877552 22 33332211 11222 3479998889985 899999888764 3333 6
Q ss_pred cceeeEEEcCCC
Q 009358 139 TVYGPLVIFPKR 150 (537)
Q Consensus 139 Gl~G~liV~~~~ 150 (537)
.|.+.+.|.+++
T Consensus 182 ~M~~~v~v~~~~ 193 (194)
T MTH00047 182 YMPIVIEVVDVD 193 (194)
T ss_pred cCcEEEEEEcCC
Confidence 788888887764
No 81
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=67.01 E-value=52 Score=30.07 Aligned_cols=102 Identities=9% Similarity=0.068 Sum_probs=61.4
Q ss_pred EEEcCccCCCcccCCCCcceEEEeCCcEEEEEEEecCCCCceeeEE-cCCe----EEEEEecCCCc-C----ceEecEEE
Q 009358 195 YTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSI-ANHS----VTVVDVDAIYI-K----SFQTDILL 264 (537)
Q Consensus 195 ~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~----~~via~DG~~v-~----P~~~d~v~ 264 (537)
+=+||... ...++-+..|-++.+.|+|.....|= +-| ..-+ =-.++.||..+ . |-.-..--
T Consensus 75 fNfnGts~--------G~mtIyiPaGw~V~V~f~N~e~~pHn-l~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NG 145 (195)
T TIGR03094 75 FNFNGTSY--------GAMTIYLPAGWNVYVTFTNYESLPHN-LKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNG 145 (195)
T ss_pred ccccCccC--------CceEEEEeCCCEEEEEEEcCCCCCcc-EEEecCCCCCCCccccccCceeEeecccccCcccccc
Confidence 45667642 24689999999999999999855432 222 2111 11245555433 1 11112234
Q ss_pred ECCcceEEEEEEeCCCCCCceEEEEEeeccCCCCCCCCcceEEEEEEec
Q 009358 265 ITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEA 313 (537)
Q Consensus 265 l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~ 313 (537)
+..||+.+..+..-++ |.||+.|-..... ....-+.|-+..
T Consensus 146 i~~Gqs~sg~~~~~~~---G~YwlvCgipGHA-----esGMw~~lIVSs 186 (195)
T TIGR03094 146 ISSGHSRSGWWNDTSA---GKYWLVCGITGHA-----ESGMWAVVIVSS 186 (195)
T ss_pred ccccceeEEEeccCCC---eeEEEEcccCChh-----hcCcEEEEEEec
Confidence 5688998877776655 9999999754433 245567776654
No 82
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=64.65 E-value=19 Score=29.17 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=40.7
Q ss_pred EEeCCcEEEEEEE--ecCCCCceeeEEcCCe--EEEEEecCCCcCceEecEE-EECCcceEEEEEEeCCCCCCceEEEEE
Q 009358 216 KVKPGKTYLLRLI--NAALNDELFFSIANHS--VTVVDVDAIYIKSFQTDIL-LITPGQTTNILLKAKPSYPNATFLMSA 290 (537)
Q Consensus 216 ~v~~G~~~rlRli--N~~~~~~~~~~i~gh~--~~via~DG~~v~P~~~d~v-~l~pGeR~dv~v~~~~~~~~g~y~i~~ 290 (537)
.-+|||++.||++ +... .. -...++. ++|..-+|..+ ..... .......++..+..++.+.-|.|.|++
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~--~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DF--KPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TC--SCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-cc--ccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEE
Confidence 4689999999999 6652 11 1223333 44555444422 12222 346788888888888765559999998
Q ss_pred ee
Q 009358 291 RP 292 (537)
Q Consensus 291 ~~ 292 (537)
..
T Consensus 84 ~~ 85 (99)
T PF01835_consen 84 KT 85 (99)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 83
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=63.21 E-value=68 Score=25.47 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=40.8
Q ss_pred EEeCCcEEE--EEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEE-EECCcceEEEEEEeCCCCCCceEEEEEee
Q 009358 216 KVKPGKTYL--LRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDIL-LITPGQTTNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 216 ~v~~G~~~r--lRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v-~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
.+..|+.++ +.+.|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+....+. .|.|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~-~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPS-PGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS--CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCC-CCeEEEEEEE
Confidence 466677554 67889987654434333 34455543 33445 789999999888876542 2899888875
No 84
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=61.40 E-value=66 Score=25.58 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=41.0
Q ss_pred CceEEEec---CCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEe
Q 009358 59 GPRIVARE---GDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWH 130 (537)
Q Consensus 59 gP~i~v~~---Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH 130 (537)
.|.+.++. ...|+|+|.|....+..+........ .+.+ .+..|+||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~~--~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGGP--WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCCC--EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 45555542 35899999999877777776653221 1211 456799999999999873 3334554
No 85
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.53 E-value=1.1e+02 Score=29.41 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=51.3
Q ss_pred CceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecch-hhhh
Q 009358 59 GPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR 137 (537)
Q Consensus 59 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~-~~~~ 137 (537)
...+.+..|..|++.+++.. .| |+...+. -|+ .+ -.-||..-...|.+ +++|+|+-.|.. .|..
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----Vi--Hsf~ip~----~~~---k~-d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~ 203 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VI--HSWTVPS----LGV---KV-DAIPGRLNQLSFEP-KRPGVFYGQCSEICGAN 203 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cc--cceeccc----cCc---ee-ECCCCcceeEEEEe-CCCEEEEEECccccCcC
Confidence 36799999999999999863 12 4444322 121 11 23478888888986 899999887764 3333
Q ss_pred -ccceeeEEEcCCC
Q 009358 138 -ATVYGPLVIFPKR 150 (537)
Q Consensus 138 -~Gl~G~liV~~~~ 150 (537)
..|.+.++|.+++
T Consensus 204 H~~M~~~v~v~~~~ 217 (228)
T MTH00140 204 HSFMPIVVEAVPLE 217 (228)
T ss_pred cCCCeEEEEEECHH
Confidence 5677777777653
No 86
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=59.06 E-value=34 Score=33.22 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=47.5
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
...+.+..|++|+|++-... -.+.|.|.+ ..-.+..-||...+..++++++ |.|..+|.
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D--ViHsF~IP~----------------l~~k~d~iPG~~~~~~~~~~~~---G~Y~g~Ca 194 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD--VIHSFWIPQ----------------LGGKIDAIPGMTTELWLTANKP---GTYRGICA 194 (247)
T ss_pred cceEEEeCCCeEEEEEEech--hceeEEecC----------------CCceeeecCCceEEEEEecCCC---eEEEEEcH
Confidence 34789999999999887664 333445543 3344556688999999999998 99999999
Q ss_pred eccCC
Q 009358 292 PYATG 296 (537)
Q Consensus 292 ~~~~~ 296 (537)
.++..
T Consensus 195 e~CG~ 199 (247)
T COG1622 195 EYCGP 199 (247)
T ss_pred hhcCC
Confidence 65543
No 87
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=54.08 E-value=16 Score=30.66 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=32.3
Q ss_pred EEEEEecCCCC---ceeEecCccccC---CCCCCCCCcccccccCCCCeEEEEEEeC--CCccc
Q 009358 71 IIKVVNHVPNN---ISIHWHGIRQLL---SGWADGPAYITQCPIQTGQSYVYNFTIS--GQRGT 126 (537)
Q Consensus 71 ~v~v~N~l~~~---~siH~HG~~~~~---~~~~DGv~~vtq~~i~PG~~~~y~f~~~--~~~Gt 126 (537)
.|++.|....+ .+=|||=-...+ .-.-.||-| .|.-|+||++|+|.=-++ .+.|+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCcCccCCcce
Confidence 37777877554 466888322111 101245433 367799999999986544 44555
No 88
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=53.64 E-value=84 Score=32.00 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=14.6
Q ss_pred ccccCCCCeEEEEEEe
Q 009358 105 QCPIQTGQSYVYNFTI 120 (537)
Q Consensus 105 q~~i~PG~~~~y~f~~ 120 (537)
+.||+|||+.+.+.++
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 5689999999999997
No 89
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=51.17 E-value=75 Score=23.80 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=36.8
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
...|+++.|+++++.+-+.+. +-.+.+...+|..+....-.. -..+..-.+.+.+.++ |+|.++..
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~~---GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPAA---GTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESSS---EEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCCC---EEEEEEEE
Confidence 357899999999888866664 223666666654332211111 0112223333455554 99998864
No 90
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=50.90 E-value=1.1e+02 Score=23.45 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=30.6
Q ss_pred EeCCcE--EEEEEEecCCCCc--eeeEEcCCeEEEEEecCCC--cCceEecEEEECCcceEEEEEEeC--CCCCCceEEE
Q 009358 217 VKPGKT--YLLRLINAALNDE--LFFSIANHSVTVVDVDAIY--IKSFQTDILLITPGQTTNILLKAK--PSYPNATFLM 288 (537)
Q Consensus 217 v~~G~~--~rlRliN~~~~~~--~~~~i~gh~~~via~DG~~--v~P~~~d~v~l~pGeR~dv~v~~~--~~~~~g~y~i 288 (537)
+++|+. +.+.+-|.+.... ..+++.. =+|=. ..|..+. .|.||+...+-++.. .....|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 356664 4577889885442 3344431 12211 1234444 789997776666554 3323489988
Q ss_pred EEee
Q 009358 289 SARP 292 (537)
Q Consensus 289 ~~~~ 292 (537)
....
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
No 91
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=50.30 E-value=53 Score=33.92 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=43.1
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
...+++++|+ ++|.+.|.+.... .|+++. |..+. ...=.|+||.+..+.+.+ ++ |+|.+.|.
T Consensus 43 p~~~tVpAG~-~~f~V~N~~~~~~--------Efe~~~--~~~vv---~e~EnIaPG~s~~l~~~L-~p---GtY~~~C~ 104 (375)
T PRK10378 43 PMTLTVNAGK-TQFIIQNHSQKAL--------EWEILK--GVMVV---EERENIAPGFSQKMTANL-QP---GEYDMTCG 104 (375)
T ss_pred cCceeeCCCC-EEEEEEeCCCCcc--------eEEeec--ccccc---ccccccCCCCceEEEEec-CC---ceEEeecC
Confidence 5679999996 8999999986542 344442 22110 012279999888887776 34 99999995
Q ss_pred e
Q 009358 292 P 292 (537)
Q Consensus 292 ~ 292 (537)
+
T Consensus 105 ~ 105 (375)
T PRK10378 105 L 105 (375)
T ss_pred c
Confidence 4
No 92
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=49.35 E-value=58 Score=27.04 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=42.2
Q ss_pred EEEEEecCCCCceeEecCccccCCCCCC-CCCcccccccCCCCeEEEEEEeCCCccceEEecchhhhhccceeeEEEcCC
Q 009358 71 IIKVVNHVPNNISIHWHGIRQLLSGWAD-GPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVYGPLVIFPK 149 (537)
Q Consensus 71 ~v~v~N~l~~~~siH~HG~~~~~~~~~D-Gv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~~~~~~Gl~G~liV~~~ 149 (537)
.|+++|.|.....|..|=-.-. .| |+ ..+.||+++.+.|.. +--|+--|.|+..........-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4889999954444444432211 12 32 358999999999985 5567777778876521223555666543
No 93
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.67 E-value=65 Score=30.87 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=43.4
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.+.+..|+++||++.+... .+.|.+.+... .+..-||..-.+.++++++ |.|+..|.-+
T Consensus 141 ~l~lP~~~~v~~~~ts~DV--iHsf~ip~~~~----------------k~d~~Pg~~~~~~~~~~~~---g~y~~~C~e~ 199 (228)
T MTH00140 141 RLVLPYSVDTRVLVTSADV--IHSWTVPSLGV----------------KVDAIPGRLNQLSFEPKRP---GVFYGQCSEI 199 (228)
T ss_pred eEEEeeCcEEEEEEEcCcc--ccceeccccCc----------------eeECCCCcceeEEEEeCCC---EEEEEECccc
Confidence 6889999999999988553 33344433222 2445589999999999888 9999999854
Q ss_pred c
Q 009358 294 A 294 (537)
Q Consensus 294 ~ 294 (537)
+
T Consensus 200 C 200 (228)
T MTH00140 200 C 200 (228)
T ss_pred c
Confidence 4
No 94
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=44.50 E-value=54 Score=28.29 Aligned_cols=50 Identities=10% Similarity=0.176 Sum_probs=34.3
Q ss_pred EEEEEEEecCCCCceeeEEcCCeEEEEEecCCCc----CceEecEEEECCcceEEEE
Q 009358 222 TYLLRLINAALNDELFFSIANHSVTVVDVDAIYI----KSFQTDILLITPGQTTNIL 274 (537)
Q Consensus 222 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v----~P~~~d~v~l~pGeR~dv~ 274 (537)
.|++||.|.+.. .+.|-...+.|...||... +......=.|.|||.+...
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 578999998753 3677788888888887632 1233455578888866554
No 95
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=44.32 E-value=17 Score=29.70 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEEEcCcCCCceEEEecCCEEEEEEEecCC
Q 009358 50 IITVNGQFPGPRIVAREGDRLIIKVVNHVP 79 (537)
Q Consensus 50 ~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~ 79 (537)
-+.+||+.-=|.=.|+.||.|+|++.|..-
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 467999987799999999999999999853
No 96
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=43.12 E-value=1.7e+02 Score=25.73 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=43.6
Q ss_pred cEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceE-------ecEEEECCcceE-EEEEEeCCCCCCceEEEEE
Q 009358 221 KTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQ-------TDILLITPGQTT-NILLKAKPSYPNATFLMSA 290 (537)
Q Consensus 221 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~-------~d~v~l~pGeR~-dv~v~~~~~~~~g~y~i~~ 290 (537)
.+|-|.+-|.|... +.++...++|+ +||..+.|.. .+++.|.|||-- ++.+ +...+ |.-.+..
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~v--n~~lS-Gyhri~V 140 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTV--NEALS-GYHRIVV 140 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEe--ccCCC-cceEEEE
Confidence 47889999999654 45889999987 7998886643 257779999987 4444 43322 5444443
No 97
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.50 E-value=1.1e+02 Score=28.54 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=43.4
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.+.++.|+++||++-... -.+.|.+.+-.. .+..-||..-.+.++++++ |.|...|.-+
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~----------------k~d~~PG~~~~~~~~~~~~---G~y~g~C~e~ 175 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLNL----------------KMDAIPGRINHLFFCPDRH---GVFVGYCSEL 175 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccCc----------------eeecCCCceEEEEEEcCCC---EEEEEEeehh
Confidence 588999999999886555 333444443222 2334589999999998887 9999999854
Q ss_pred cC
Q 009358 294 AT 295 (537)
Q Consensus 294 ~~ 295 (537)
..
T Consensus 176 CG 177 (194)
T MTH00047 176 CG 177 (194)
T ss_pred hC
Confidence 43
No 98
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=41.68 E-value=39 Score=27.20 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=28.5
Q ss_pred EEEEEEEecCCCCceeeEEcCCeEEEEEecCCCc--C--ceEecEEEECCcceEEEE
Q 009358 222 TYLLRLINAALNDELFFSIANHSVTVVDVDAIYI--K--SFQTDILLITPGQTTNIL 274 (537)
Q Consensus 222 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v--~--P~~~d~v~l~pGeR~dv~ 274 (537)
.|++||-|.+.. .+.|-...+.|...||..- + -+..+.=.|.|||.+..-
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 578999999976 3566666777776666421 1 122345578888866554
No 99
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=40.39 E-value=2.4e+02 Score=25.07 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=35.6
Q ss_pred ceEEEecCCEEEEEEEecCCC-----CceeEec--C-ccccC-CCCCCCCCcc-----cccccCCCCeEEEEEEeC
Q 009358 60 PRIVAREGDRLIIKVVNHVPN-----NISIHWH--G-IRQLL-SGWADGPAYI-----TQCPIQTGQSYVYNFTIS 121 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~-----~~siH~H--G-~~~~~-~~~~DGv~~v-----tq~~i~PG~~~~y~f~~~ 121 (537)
+.=..+.|.+..|.+.=...+ .+.+|-- | +.+.. -+..||-... --||+.+||.++|.+.++
T Consensus 48 ~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 48 TPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred CceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 345567788777766655432 2333321 2 22211 1124554322 359999999999999985
No 100
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.72 E-value=39 Score=29.17 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=11.2
Q ss_pred ccccCCCCeEEEEEEe
Q 009358 105 QCPIQTGQSYVYNFTI 120 (537)
Q Consensus 105 q~~i~PG~~~~y~f~~ 120 (537)
|--|.||++|+|.=-.
T Consensus 73 qP~L~PGe~F~Y~S~~ 88 (127)
T PRK05461 73 QPVLAPGESFEYTSGA 88 (127)
T ss_pred CceECCCCCeEEeCCC
Confidence 3448899988886443
No 101
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=37.19 E-value=2e+02 Score=22.42 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=14.1
Q ss_pred EeCCcEEEEEEEecCCCCceeeEE
Q 009358 217 VKPGKTYLLRLINAALNDELFFSI 240 (537)
Q Consensus 217 v~~G~~~rlRliN~~~~~~~~~~i 240 (537)
.+.|++++|++-..-.....-|.+
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEE
Confidence 567888888877644333333444
No 102
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=36.74 E-value=2.1e+02 Score=24.51 Aligned_cols=61 Identities=16% Similarity=0.065 Sum_probs=41.6
Q ss_pred EEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCc-------CceEecEEEECCcceEEEEEEeCCC
Q 009358 215 LKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI-------KSFQTDILLITPGQTTNILLKAKPS 280 (537)
Q Consensus 215 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-------~P~~~d~v~l~pGeR~dv~v~~~~~ 280 (537)
|++..-..|+|++-..+ ..++.|+|..+ ++.++..- .+....++.+..|++|.|.|...+.
T Consensus 54 ~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 66766668999988443 46677888766 55555432 3456678889999999999987654
No 103
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=36.74 E-value=1.2e+02 Score=29.10 Aligned_cols=60 Identities=10% Similarity=0.101 Sum_probs=42.1
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.+.+..|+++||++.+... .+.|.+.+-.. .+..-||..-.+.+.++++ |.|+..|.-+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~----------------k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADV--IHSWTVPSLGV----------------KVDAVPGRLNQIGFTITRP---GVFYGQCSEI 199 (228)
T ss_pred eEEEecCCEEEEEEEeCCc--cccccccccCc----------------ceecCCCceEEEEEEeCCC---EEEEEEChhh
Confidence 5788999999999888553 23333332222 2334488999999998888 9999999854
Q ss_pred c
Q 009358 294 A 294 (537)
Q Consensus 294 ~ 294 (537)
.
T Consensus 200 C 200 (228)
T MTH00008 200 C 200 (228)
T ss_pred c
Confidence 3
No 104
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=36.06 E-value=95 Score=23.07 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=21.3
Q ss_pred EEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecC
Q 009358 215 LKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDA 252 (537)
Q Consensus 215 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG 252 (537)
+.+.+|+..+||..... .+.+.+-..+|.. +|
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g 33 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EG 33 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CC
Confidence 56778888888855433 2677777777753 44
No 105
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=35.53 E-value=2.9e+02 Score=23.75 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=47.8
Q ss_pred EEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCC--CCceEEEEEee
Q 009358 224 LLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSY--PNATFLMSARP 292 (537)
Q Consensus 224 rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~--~~g~y~i~~~~ 292 (537)
.|-+.|......+.+. +......||..++.+..+.+.|.|-+..++.|+-++.. .|.+|.++...
T Consensus 28 tLSiRNtd~~~~i~i~----~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~~GGsGANFiv~W~a 94 (125)
T PF11322_consen 28 TLSIRNTDPTDPIYIT----SVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDTSGGSGANFIVEWSA 94 (125)
T ss_pred EEEEEcCCCCCCEEEE----EEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccCCCCccceEEEEEec
Confidence 4666677755554332 34556788999999999999999999999999876543 24588888764
No 106
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.53 E-value=1.1e+02 Score=29.41 Aligned_cols=60 Identities=8% Similarity=0.077 Sum_probs=41.5
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
++.+..|+++||++..... .+.|.+.+.. -.+..-||.+-.+.+.++++ |.|+..|.-+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~ip~~~----------------~k~da~PG~~~~~~~~~~~~---G~~~g~C~e~ 199 (230)
T MTH00129 141 RMVVPVESPIRVLVSAEDV--LHSWAVPALG----------------VKMDAVPGRLNQTAFIASRP---GVFYGQCSEI 199 (230)
T ss_pred eEEEecCcEEEEEEEeCcc--ccceeccccC----------------CccccCCCceEEEEEEeCCc---eEEEEEChhh
Confidence 5789999999988766553 2233333222 12334489999999999887 9999999854
Q ss_pred c
Q 009358 294 A 294 (537)
Q Consensus 294 ~ 294 (537)
+
T Consensus 200 C 200 (230)
T MTH00129 200 C 200 (230)
T ss_pred c
Confidence 4
No 107
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.14 E-value=1.3e+02 Score=28.87 Aligned_cols=60 Identities=5% Similarity=0.063 Sum_probs=41.1
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.+.+..|+++||++...... +.|.+..... .+..-||..-.+.+.++++ |.|+..|.-+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--Hsf~ip~lg~----------------k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDVL--HSWAVPSLGL----------------KTDAIPGRLNQTTLMSTRP---GLYYGQCSEI 199 (227)
T ss_pred eEEecCCCEEEEEEEECccc--cccccccccc----------------ceecCCCceEEEEEecCCc---EEEEEECccc
Confidence 57889999999887765532 3333332222 2334478888888888888 9999999854
Q ss_pred c
Q 009358 294 A 294 (537)
Q Consensus 294 ~ 294 (537)
.
T Consensus 200 C 200 (227)
T MTH00098 200 C 200 (227)
T ss_pred c
Confidence 3
No 108
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=34.76 E-value=1.1e+02 Score=26.96 Aligned_cols=32 Identities=19% Similarity=0.542 Sum_probs=24.2
Q ss_pred ECCcceEEEEEE-eCCCCCCceEEEEEeeccCC
Q 009358 265 ITPGQTTNILLK-AKPSYPNATFLMSARPYATG 296 (537)
Q Consensus 265 l~pGeR~dv~v~-~~~~~~~g~y~i~~~~~~~~ 296 (537)
|.||+.+.|.++ ..+|..+|.|.+.+......
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G 131 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPG 131 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCC
Confidence 788999999994 44555569999998875443
No 109
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=33.13 E-value=1.4e+02 Score=28.60 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=43.6
Q ss_pred ceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEee
Q 009358 213 FKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 213 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
.++.+..|+.+||++-..... |.|+| |...-....-||..-.+.++++++ |.|...|.-
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~~~---G~y~g~CaE 197 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFI---------PQLGSQIYAMAGMQTKLHLIANEP---GVYDGISAN 197 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhh---------hhcCCeeecCCCceEEEEEEeCCC---EEEEEEchh
Confidence 468899999999988766532 23333 333334445589999999999988 999999985
Q ss_pred cc
Q 009358 293 YA 294 (537)
Q Consensus 293 ~~ 294 (537)
++
T Consensus 198 ~C 199 (226)
T TIGR01433 198 YS 199 (226)
T ss_pred hc
Confidence 44
No 110
>PRK13202 ureB urease subunit beta; Reviewed
Probab=32.86 E-value=1.3e+02 Score=24.86 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=41.0
Q ss_pred eEEEecC--CEEEEEEEecCCCCc--eeEecCccccCCC---------CCCCCCcccccccCCCCeEEEEEEeCCCccc
Q 009358 61 RIVAREG--DRLIIKVVNHVPNNI--SIHWHGIRQLLSG---------WADGPAYITQCPIQTGQSYVYNFTISGQRGT 126 (537)
Q Consensus 61 ~i~v~~G--d~v~v~v~N~l~~~~--siH~HG~~~~~~~---------~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt 126 (537)
.|.+++| .+++|+|+|..+++. .-|+|=.+....- +--..|.-|-.-..||++.+-+... -.|.
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~--~gG~ 88 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP--LGGR 88 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE--ccCC
Confidence 5999999 589999999998765 4477755433211 1112333344557788888888752 3454
No 111
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=31.94 E-value=3.5e+02 Score=25.54 Aligned_cols=76 Identities=9% Similarity=-0.042 Sum_probs=49.1
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecch-hhhh-
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR- 137 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~-~~~~- 137 (537)
..|.+..|..|++.++-.. .| |....+.- ++.+.. -||..-...|++ +++|+|+=.|-. .|..
T Consensus 130 n~l~iP~g~~v~~~ltS~D----Vi--Hsf~vP~l-------~~k~da-iPG~~~~~~~~~-~~~G~y~g~Cae~CG~~H 194 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD----TM--TSFWIPQL-------GGQKYA-MTGMTMNWYLQA-DQVGTYRGRNANFNGEGF 194 (217)
T ss_pred CcEEEECCCEEEEEEECCc----hh--hhhhchhh-------Cceeec-CCCceEEEEEEe-CCCEEEEEEehhhcCccc
Confidence 5788999999999988763 22 33322211 112223 379999999996 899999877652 3333
Q ss_pred ccceeeEEEcCCC
Q 009358 138 ATVYGPLVIFPKR 150 (537)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (537)
+-|..-+.|.+++
T Consensus 195 s~M~~~v~v~~~~ 207 (217)
T TIGR01432 195 ADQTFDVNAVSEK 207 (217)
T ss_pred cCCeEEEEEeCHH
Confidence 5677777776543
No 112
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=31.84 E-value=2.8e+02 Score=23.54 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=36.5
Q ss_pred EEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCc-CceEecEEEECCcceEEEEEEeCCC
Q 009358 215 LKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI-KSFQTDILLITPGQTTNILLKAKPS 280 (537)
Q Consensus 215 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-~P~~~d~v~l~pGeR~dv~v~~~~~ 280 (537)
|++.....|+|.+...+ ..++.|+|.. |+..++..- .+.....+.|..|++|.|.|+..+.
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 55554456888885333 3567788763 344333221 2333456788888888888877554
No 113
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=30.68 E-value=2.7e+02 Score=21.96 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=37.2
Q ss_pred cEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEe
Q 009358 221 KTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (537)
Q Consensus 221 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 291 (537)
..++|.|.|.|..... |.+ ..... ......++.|.+|++.++.+...... |-|-+..+
T Consensus 20 g~l~l~l~N~g~~~~~-~~v-------~~~~y---~~~~~~~~~v~ag~~~~~~w~l~~s~--gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVT-FTV-------YDNAY---GGGGPWTYTVAAGQTVSLTWPLAASG--GWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCCcEE-EEE-------EeCCc---CCCCCEEEEECCCCEEEEEEeecCCC--CcEEEEEE
Confidence 4789999999865443 333 32111 11223678899999999888885443 77766665
No 114
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=30.37 E-value=2.9e+02 Score=22.15 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=36.9
Q ss_pred EEeCCcEEE--EEEEecCCCCceeeEEc--C---CeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEE
Q 009358 216 KVKPGKTYL--LRLINAALNDELFFSIA--N---HSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLM 288 (537)
Q Consensus 216 ~v~~G~~~r--lRliN~~~~~~~~~~i~--g---h~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i 288 (537)
.+..|++|. +.|.|.|... .+|++. . ..|.+ +| ..-.|+||+..++.|++....+-|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 456677664 8899999664 335543 2 11211 12 2346999999999999873211266543
Q ss_pred E
Q 009358 289 S 289 (537)
Q Consensus 289 ~ 289 (537)
.
T Consensus 83 ~ 83 (102)
T PF14874_consen 83 S 83 (102)
T ss_pred E
Confidence 3
No 115
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=29.30 E-value=5e+02 Score=24.79 Aligned_cols=76 Identities=7% Similarity=-0.096 Sum_probs=48.9
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecch-hhhh-
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR- 137 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~-~~~~- 137 (537)
..|++..|..|+++++-.. .| |+.....- ++.+. .-||..-+..|++ +++|+|.=.|-. .|..
T Consensus 139 nel~lP~g~pV~~~ltS~D----Vi--HSF~VP~l-------~~K~D-aiPG~~n~~~~~~-~~~G~y~g~CaE~CG~~H 203 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VM--NSFFIPQL-------GSQIY-AMAGMQTKLHLIA-NEPGVYDGISANYSGPGF 203 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hh--hhhhhhhc-------CCeee-cCCCceEEEEEEe-CCCEEEEEEchhhcCcCc
Confidence 5789999999999988663 22 33222211 11122 2378888888986 899999877753 2322
Q ss_pred ccceeeEEEcCCC
Q 009358 138 ATVYGPLVIFPKR 150 (537)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (537)
+.|.+-++|.+++
T Consensus 204 a~M~~~V~v~~~~ 216 (226)
T TIGR01433 204 SGMKFKAIATDRA 216 (226)
T ss_pred cCCeEEEEEECHH
Confidence 6777777777653
No 116
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.22 E-value=1.7e+02 Score=28.13 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=41.7
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.+.+..|+.+|+++-.+-. .+.|.+.+... .+..-||..-.+.+.++++ |.|...|.-+
T Consensus 145 ~lvlP~~~~v~~~itS~DV--iHsf~vp~lg~----------------k~daiPG~~~~~~~~~~~~---G~y~g~Cse~ 203 (234)
T MTH00051 145 RLIVPIQTQVRVLVTAADV--LHSFAVPSLSV----------------KIDAVPGRLNQTSFFIKRP---GVFYGQCSEI 203 (234)
T ss_pred EEEEecCcEEEEEEEeCch--hccccccccCc----------------eeEccCCceEeEEEEeCCC---EEEEEEChhh
Confidence 5789999999998887643 23333333222 2334478888888888887 9999999854
Q ss_pred c
Q 009358 294 A 294 (537)
Q Consensus 294 ~ 294 (537)
+
T Consensus 204 C 204 (234)
T MTH00051 204 C 204 (234)
T ss_pred c
Confidence 3
No 117
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.09 E-value=2e+02 Score=27.66 Aligned_cols=61 Identities=5% Similarity=0.049 Sum_probs=41.3
Q ss_pred ceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEee
Q 009358 213 FKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 213 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
..+.+..|+.+||++-.... .+.|.+.+.. -.+..-||..-.+.+.++++ |.|...|.-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~iP~lg----------------~k~daiPG~~~~~~~~~~~~---G~~~g~Cse 198 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV--LHSWTVPALG----------------VKMDAVPGRLNQATFIISRP---GLYYGQCSE 198 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc--cccccccccC----------------ceeEecCCceEEEEEEeCCc---EEEEEEchh
Confidence 36788999999888765553 2333333222 22334478888888888888 999999985
Q ss_pred cc
Q 009358 293 YA 294 (537)
Q Consensus 293 ~~ 294 (537)
+.
T Consensus 199 ~C 200 (230)
T MTH00185 199 IC 200 (230)
T ss_pred hc
Confidence 43
No 118
>COG3241 Azurin [Energy production and conversion]
Probab=28.77 E-value=67 Score=27.21 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=30.2
Q ss_pred CCcCc----eEecEEEECCcceEEEEEEeCCCCCCceEEEEEee
Q 009358 253 IYIKS----FQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (537)
Q Consensus 253 ~~v~P----~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 292 (537)
.|++| +...+-+|+.|||-++-++...-.+|-.|.+.|..
T Consensus 93 dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCtF 136 (151)
T COG3241 93 DYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCTF 136 (151)
T ss_pred ccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEEEEec
Confidence 55655 33467899999999999988765444589999873
No 119
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=28.57 E-value=2.7e+02 Score=23.69 Aligned_cols=62 Identities=26% Similarity=0.394 Sum_probs=35.6
Q ss_pred CceEEEecCCEEEEEEEecCC---CCceeEec----Ccccc-CCCCCCCCCcccccccCCCCeEEEEEEeC
Q 009358 59 GPRIVAREGDRLIIKVVNHVP---NNISIHWH----GIRQL-LSGWADGPAYITQCPIQTGQSYVYNFTIS 121 (537)
Q Consensus 59 gP~i~v~~Gd~v~v~v~N~l~---~~~siH~H----G~~~~-~~~~~DGv~~vtq~~i~PG~~~~y~f~~~ 121 (537)
+..=.++.|..+.+.+.=..+ .......| |+... ..+..||=-+ ..|||.+|+.++|.+.++
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEeee
Confidence 344567778877777653332 22333334 43322 1111355322 379999999999999873
No 120
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.46 E-value=52 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.9
Q ss_pred eeEEEEEcCcCCCceEEEecCCEEEEE
Q 009358 47 TKSIITVNGQFPGPRIVAREGDRLIIK 73 (537)
Q Consensus 47 ~~~~~~~NG~~PgP~i~v~~Gd~v~v~ 73 (537)
+...+.+||+.-++.-+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 567899999998899999999999875
No 121
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=26.93 E-value=1.6e+02 Score=24.70 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=28.6
Q ss_pred cEEEEEEEecCCCCc-eeeEEcCCe-EEEEEecCCCcCceEecEEEECCcceEEEEEEeCCC
Q 009358 221 KTYLLRLINAALNDE-LFFSIANHS-VTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPS 280 (537)
Q Consensus 221 ~~~rlRliN~~~~~~-~~~~i~gh~-~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~ 280 (537)
..|+++|+|.+.... +.+.++|.. +++. .....+.|.+|+..++-|...-+
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEEEC
Confidence 368999999997764 567776632 3221 12368889999988877765443
No 122
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=26.64 E-value=2.3e+02 Score=24.07 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=34.2
Q ss_pred ceEEEecCCEEEEEEEecCCC-----CceeEec--CccccCCC-CCCCCCcc-cccccCCCCeEEEEEEeC
Q 009358 60 PRIVAREGDRLIIKVVNHVPN-----NISIHWH--GIRQLLSG-WADGPAYI-TQCPIQTGQSYVYNFTIS 121 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~-----~~siH~H--G~~~~~~~-~~DGv~~v-tq~~i~PG~~~~y~f~~~ 121 (537)
..=.++.|..+.+.+.=...+ .+.+|+. |+...... ..|+=... ..|||.+|+.++|.+.++
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 344566777777766533221 2233333 54432211 13442121 469999999999999763
No 123
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=26.36 E-value=3.2e+02 Score=26.04 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=61.9
Q ss_pred eecCeeeEEEEEcCcCCCceEEEecCCEEEEEEEecCCCC-----ceeEecCccccCCCCCCCCCcccccccCCCCeEEE
Q 009358 42 TRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNN-----ISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVY 116 (537)
Q Consensus 42 ~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~-----~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y 116 (537)
+++|..--.+++.|.+-.-.|.|..|-.+|+++.=..+-+ .+-.||+.. ..+-+|....
T Consensus 79 a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgiaa----------------nlpl~q~ssI 142 (272)
T COG4633 79 APNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIAA----------------NLPLNQVSSI 142 (272)
T ss_pred ccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhcccccccccc----------------cCCcCceeEE
Confidence 3444444446666666546899999999999998876432 333444432 2456888889
Q ss_pred EEEeCCCccceEEecchhhhhccceeeEEEcCCCCC
Q 009358 117 NFTISGQRGTLFWHAHISWLRATVYGPLVIFPKRGV 152 (537)
Q Consensus 117 ~f~~~~~~Gt~wYH~h~~~~~~Gl~G~liV~~~~~~ 152 (537)
+|. +.+.|.|-+-|... -|+|.++|+.....
T Consensus 143 e~T-~~s~ge~af~cgmn----m~~G~~~vet~~~~ 173 (272)
T COG4633 143 EFT-PISKGEYAFLCGMN----MFRGNIQVETLTGK 173 (272)
T ss_pred Eec-cccccchhhhcchh----hccCeeEEEecCCc
Confidence 998 68999986666543 57889999987653
No 124
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.22 E-value=2.7e+02 Score=26.63 Aligned_cols=60 Identities=5% Similarity=0.057 Sum_probs=41.0
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.+.+..|+.+||++-.+... +.|.+.... -.+..-||..-.+.++++++ |.|+..|.-+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--Hsf~vP~lg----------------~K~DavPG~~n~~~~~~~~~---G~y~g~CsE~ 199 (227)
T MTH00117 141 RMVIPMESPIRILITAEDVL--HSWAVPSLG----------------VKTDAVPGRLNQTSFITTRP---GVFYGQCSEI 199 (227)
T ss_pred eEEEecCceEEEEEEecchh--hcccccccC----------------ceeEecCCceEEEEEEEccc---ceEEEEeccc
Confidence 57889999999887665532 223333222 22334488888889998888 9999999854
Q ss_pred c
Q 009358 294 A 294 (537)
Q Consensus 294 ~ 294 (537)
.
T Consensus 200 C 200 (227)
T MTH00117 200 C 200 (227)
T ss_pred c
Confidence 3
No 125
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=26.09 E-value=41 Score=24.41 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=18.9
Q ss_pred EEEEcCcCC-CceEEEecCCEEEE
Q 009358 50 IITVNGQFP-GPRIVAREGDRLII 72 (537)
Q Consensus 50 ~~~~NG~~P-gP~i~v~~Gd~v~v 72 (537)
.+.+||+.- -|..+++.||.|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 467899864 68999999999986
No 126
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=26.04 E-value=1.9e+02 Score=27.37 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=42.7
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
++.+..|+++||++-..... + .|.| |...-.+..-||..-.+.++++++ |.|...|.-+
T Consensus 131 ~l~iP~g~~v~~~ltS~DVi--H-------sf~v---------P~l~~k~daiPG~~~~~~~~~~~~---G~y~g~Cae~ 189 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADTM--T-------SFWI---------PQLGGQKYAMTGMTMNWYLQADQV---GTYRGRNANF 189 (217)
T ss_pred cEEEECCCEEEEEEECCchh--h-------hhhc---------hhhCceeecCCCceEEEEEEeCCC---EEEEEEehhh
Confidence 57888899888888766532 2 2222 333334445589999999999988 9999999854
Q ss_pred c
Q 009358 294 A 294 (537)
Q Consensus 294 ~ 294 (537)
+
T Consensus 190 C 190 (217)
T TIGR01432 190 N 190 (217)
T ss_pred c
Confidence 3
No 127
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=25.74 E-value=75 Score=29.66 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=31.5
Q ss_pred EEEECCcceEEEEEEeCCCCC-----CceEEEEEeeccCCCCCCCCcceEEEEEEe
Q 009358 262 ILLITPGQTTNILLKAKPSYP-----NATFLMSARPYATGQGTFDNSTVAGILEYE 312 (537)
Q Consensus 262 ~v~l~pGeR~dv~v~~~~~~~-----~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~ 312 (537)
.-.+.+||.|||.|+..-|.+ -|.|++..+..+............++|+|.
T Consensus 50 ~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~~l~~s~Rp~~l~y~ 105 (199)
T PF06775_consen 50 ARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGKVLASSSRPAMLPYR 105 (199)
T ss_pred ccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCcEEEEEecceecccC
Confidence 456889999999998765432 378988887654332111223334556654
No 128
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=24.99 E-value=2.5e+02 Score=26.86 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=47.1
Q ss_pred ceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecch-hhhh-
Q 009358 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR- 137 (537)
Q Consensus 60 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h~-~~~~- 137 (537)
-.+.+..|..|++.++... .| |+...+. -|+ . .-.-||..-...|.+ +.+|+|+-.|.. .|..
T Consensus 140 n~lvlP~~~~v~~~~tS~D----Vi--Hsf~vP~----~~~---k-~daiPG~~~~~~~~~-~~~G~~~g~Cse~CG~~H 204 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD----VI--HSWTVPS----LGV---K-VDAVPGRLNQIGFTI-TRPGVFYGQCSEICGANH 204 (228)
T ss_pred ceEEEecCCEEEEEEEeCC----cc--ccccccc----cCc---c-eecCCCceEEEEEEe-CCCEEEEEEChhhcCcCc
Confidence 4677888999999998863 22 4433222 111 1 123478888888886 899999877753 3332
Q ss_pred ccceeeEEEcCC
Q 009358 138 ATVYGPLVIFPK 149 (537)
Q Consensus 138 ~Gl~G~liV~~~ 149 (537)
..|...+.|.++
T Consensus 205 s~M~~~v~vv~~ 216 (228)
T MTH00008 205 SFMPIVLEAVDT 216 (228)
T ss_pred cCceeEEEEECH
Confidence 566666666554
No 129
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=24.83 E-value=4.1e+02 Score=22.10 Aligned_cols=37 Identities=5% Similarity=0.144 Sum_probs=19.7
Q ss_pred CCeEEEEEecCCCc--CceEecEEEECCcceEEEEEEeC
Q 009358 242 NHSVTVVDVDAIYI--KSFQTDILLITPGQTTNILLKAK 278 (537)
Q Consensus 242 gh~~~via~DG~~v--~P~~~d~v~l~pGeR~dv~v~~~ 278 (537)
.+++++...++... .+.....+.|.+|..|.+.+.-.
T Consensus 44 ~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~ 82 (122)
T PF14344_consen 44 TYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGT 82 (122)
T ss_pred eEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECC
Confidence 44555544444322 23445566666666666666543
No 130
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=24.78 E-value=1.1e+02 Score=27.15 Aligned_cols=70 Identities=10% Similarity=0.123 Sum_probs=40.8
Q ss_pred ccEEEEEEEEEEEEeecCeeeEEEEEcCcC-CCceEEEecCCEEEEEEEecCCCCceeEecCccccCCCCCCCCCc
Q 009358 28 ITRHYKFDIKMQNVTRLCHTKSIITVNGQF-PGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAY 102 (537)
Q Consensus 28 ~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~-PgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~ 102 (537)
....|-++.++...... ...+.+.+.|.+ +|..-+. .|..++++++.. .....++.+|.- +..+.+|..-
T Consensus 32 ~~~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~l--Pd~F~eg~~V 102 (148)
T PRK13254 32 QNIVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGIL--PDLFREGQGV 102 (148)
T ss_pred hCCceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCCC--CccccCCCEE
Confidence 34557777766543322 222334455555 5544333 778888888776 566788888874 3344666543
No 131
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.70 E-value=79 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=22.5
Q ss_pred ccccCCCCeEEEEEEe---CCCccceEEecch
Q 009358 105 QCPIQTGQSYVYNFTI---SGQRGTLFWHAHI 133 (537)
Q Consensus 105 q~~i~PG~~~~y~f~~---~~~~Gt~wYH~h~ 133 (537)
..||+||++++..++. |...|+|-|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 3589999999999942 3456999888764
No 132
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=24.45 E-value=61 Score=24.32 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=17.9
Q ss_pred eeEEEEEcCcCCC---ceEEEecCCEEEEE
Q 009358 47 TKSIITVNGQFPG---PRIVAREGDRLIIK 73 (537)
Q Consensus 47 ~~~~~~~NG~~Pg---P~i~v~~Gd~v~v~ 73 (537)
...++.+||+.|- -.+.++.||+|+.+
T Consensus 39 ~~W~~~vNG~~~~~ga~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 39 SYWMYYVNGESANVGAGSYKLKDGDKITWY 68 (68)
T ss_dssp EEEEEEETTEE-SS-CCC-B--TTEEEEE-
T ss_pred ceeEEEECCEEhhcCcceeEeCCCCEEEeC
Confidence 5678899999873 48889999998753
No 133
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=23.37 E-value=2.4e+02 Score=23.14 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=38.6
Q ss_pred eEEEecC-CEEEEEEEecCCCCce--eEecCccccCCC---------CCCCCCcccccccCCCCeEEEEEE
Q 009358 61 RIVAREG-DRLIIKVVNHVPNNIS--IHWHGIRQLLSG---------WADGPAYITQCPIQTGQSYVYNFT 119 (537)
Q Consensus 61 ~i~v~~G-d~v~v~v~N~l~~~~s--iH~HG~~~~~~~---------~~DGv~~vtq~~i~PG~~~~y~f~ 119 (537)
.|++++| .+++|.|+|..+++.- -|+|=.+....- +--..|.-|-.-..||++.+-+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 5888888 8899999999987654 477755433211 111233334455778888888875
No 134
>PRK13203 ureB urease subunit beta; Reviewed
Probab=23.30 E-value=2.4e+02 Score=23.20 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=40.6
Q ss_pred eEEEecC-CEEEEEEEecCCCCc--eeEecCccccCCCCC---------CCCCcccccccCCCCeEEEEEEeCCCccc
Q 009358 61 RIVAREG-DRLIIKVVNHVPNNI--SIHWHGIRQLLSGWA---------DGPAYITQCPIQTGQSYVYNFTISGQRGT 126 (537)
Q Consensus 61 ~i~v~~G-d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~---------DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt 126 (537)
.|++++| .+++|+|+|..+++. .-|+|=.+....-.. -..|.-|-.-..||++.+-+.. .-.|.
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV--~~gG~ 87 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV--PLAGA 87 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE--EccCc
Confidence 4888888 889999999998765 447775543321101 1233334455778888888875 34454
No 135
>PRK07440 hypothetical protein; Provisional
Probab=22.58 E-value=82 Score=23.91 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=21.0
Q ss_pred eEEEEEcCcCCC----ceEEEecCCEEEEE
Q 009358 48 KSIITVNGQFPG----PRIVAREGDRLIIK 73 (537)
Q Consensus 48 ~~~~~~NG~~Pg----P~i~v~~Gd~v~v~ 73 (537)
.-+..+||.+-- +...+++||+|+|-
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 346789999765 78999999999874
No 136
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.47 E-value=48 Score=27.01 Aligned_cols=12 Identities=33% Similarity=0.196 Sum_probs=4.7
Q ss_pred CCCCchhHHHHHH
Q 009358 1 MGASLLPSSLAIL 13 (537)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (537)
|+ |-...+|+++
T Consensus 1 Ma-SK~~llL~l~ 12 (95)
T PF07172_consen 1 MA-SKAFLLLGLL 12 (95)
T ss_pred Cc-hhHHHHHHHH
Confidence 45 3333333333
No 137
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.44 E-value=2.9e+02 Score=26.42 Aligned_cols=60 Identities=7% Similarity=0.089 Sum_probs=40.7
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.+.+..|+.+||++...-. .+.|.+.+... .+..-||..-.+.+.++++ |.|...|.-+
T Consensus 141 ~l~lP~~~~v~~~~tS~DV--iHsf~vP~lg~----------------k~da~PG~~n~~~~~~~~~---G~~~g~C~e~ 199 (228)
T MTH00076 141 RMVVPMESPIRMLITAEDV--LHSWAVPSLGI----------------KTDAIPGRLNQTSFIASRP---GVYYGQCSEI 199 (228)
T ss_pred eEEEecCCEEEEEEEeccc--cccccccccCc----------------eEEccCCcceeEEEEeCCc---EEEEEEChhh
Confidence 6889999999998866553 33344433222 2233478888888888887 9999999854
Q ss_pred c
Q 009358 294 A 294 (537)
Q Consensus 294 ~ 294 (537)
.
T Consensus 200 C 200 (228)
T MTH00076 200 C 200 (228)
T ss_pred c
Confidence 3
No 138
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=22.33 E-value=86 Score=19.38 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=16.3
Q ss_pred CCCCchhHHHHHHHHHHHhcccc
Q 009358 1 MGASLLPSSLAILCVWFLFPAGL 23 (537)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (537)
|+.+.+.-++++|+++.+..-+.
T Consensus 1 M~k~~lgcWilvLfvatwsdvgl 23 (29)
T PF11587_consen 1 MVKSHLGCWILVLFVATWSDVGL 23 (29)
T ss_dssp --TTTTTTHHHHHHHHHHHHHTT
T ss_pred CccccccHHHHHHHHHHHhhhcc
Confidence 77888899999998888755433
No 139
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=21.94 E-value=2.4e+02 Score=28.97 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEEEEEEEEEeecCeeeEE---EEEcCcCCCceEEEecCCEEEEEEEecCCCCce-------eEecCccccCCCCCCCCC
Q 009358 32 YKFDIKMQNVTRLCHTKSI---ITVNGQFPGPRIVAREGDRLIIKVVNHVPNNIS-------IHWHGIRQLLSGWADGPA 101 (537)
Q Consensus 32 ~~l~~~~~~~~~~g~~~~~---~~~NG~~PgP~i~v~~Gd~v~v~v~N~l~~~~s-------iH~HG~~~~~~~~~DGv~ 101 (537)
.+..++...+..-|+...+ ++=||.-| +++.+=.+--||+.|..-.... +.-.|+.....
T Consensus 249 V~~~v~~A~Y~vpgR~l~~~l~VtN~g~~p---v~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~------- 318 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTMTLTVTNNGDSP---VRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN------- 318 (381)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEESSS----BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---------
T ss_pred eEEEEeccEEecCCcEEEEEEEEEcCCCCc---eEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-------
Q ss_pred cccccccCCCCeEEEEEEe
Q 009358 102 YITQCPIQTGQSYVYNFTI 120 (537)
Q Consensus 102 ~vtq~~i~PG~~~~y~f~~ 120 (537)
.||+|||+.+.+..+
T Consensus 319 ----~pI~PGETrtl~V~a 333 (381)
T PF04744_consen 319 ----SPIAPGETRTLTVEA 333 (381)
T ss_dssp ----S-B-TT-EEEEEEEE
T ss_pred ----CCcCCCceEEEEEEe
No 140
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=21.73 E-value=3.1e+02 Score=26.24 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=39.7
Q ss_pred cceEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeC
Q 009358 212 TFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAK 278 (537)
Q Consensus 212 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~ 278 (537)
++.+++++|+...+|++..+. +-.|...+..+-++..+-++.....+.++-..|+-+.++..
T Consensus 75 PPl~rl~pg~~q~vRii~~~~-----lp~drEs~f~l~v~~IP~~~~~~~~l~ia~r~~iklfyRP~ 136 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKSG-----SPLNTEHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQPA 136 (230)
T ss_pred CCeEEECCCCceEEEEEECCC-----CCCCeeEEEEEEEEEcCCCCCCCCEEEEEEEeEEEEEEeCC
Confidence 468999999999999997752 12355555555566555433233456666666666666543
No 141
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=21.55 E-value=2.3e+02 Score=26.94 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=9.0
Q ss_pred ecEEEECCcceEEE
Q 009358 260 TDILLITPGQTTNI 273 (537)
Q Consensus 260 ~d~v~l~pGeR~dv 273 (537)
...|.|.|||++.+
T Consensus 153 G~~l~L~PGESiTL 166 (225)
T PF07385_consen 153 GTQLRLNPGESITL 166 (225)
T ss_dssp T-EEEE-TT-EEEE
T ss_pred CceEEeCCCCeEee
Confidence 46899999998876
No 142
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=21.34 E-value=3e+02 Score=22.65 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=37.8
Q ss_pred eEEEecC-CEEEEEEEecCCCCc--eeEecCccccCCCCCC---------CCCcccccccCCCCeEEEEEE
Q 009358 61 RIVAREG-DRLIIKVVNHVPNNI--SIHWHGIRQLLSGWAD---------GPAYITQCPIQTGQSYVYNFT 119 (537)
Q Consensus 61 ~i~v~~G-d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D---------Gv~~vtq~~i~PG~~~~y~f~ 119 (537)
.|++++| ++++|+|+|..+++. .-|+|=.+....-..| ..|.-|-.-..||++.+-+..
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 5888887 689999999998765 4477755443211111 133334445678888887775
No 143
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=21.19 E-value=2.3e+02 Score=28.57 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=45.5
Q ss_pred eEEEeCCcEEEEEEEecCCCCceeeEEcCCeEEEEEecCCCcCceEecEEEECCcceEEEEEEeCCCCCCceEEEEEeec
Q 009358 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (537)
Q Consensus 214 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 293 (537)
.+.+..|+.+||++-....... |.| |...-.+..-||..-.+.+.++++ |.|...|.-+
T Consensus 152 eL~iP~g~pV~f~lTS~DViHS--F~I----------------P~Lg~K~damPG~~n~l~~~a~~~---G~Y~G~CaEy 210 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVMNS--FFI----------------PRLGSQIYAMAGMQTRLHLIANEP---GTYDGISASY 210 (315)
T ss_pred cEEEecCCEEEEEEEEchhhhh--hhh----------------hhhCCeeecCCCceeEEEEEcCCC---EEEEEEChhh
Confidence 5889999999999887774322 233 344445556689999999999988 9999999865
Q ss_pred cC
Q 009358 294 AT 295 (537)
Q Consensus 294 ~~ 295 (537)
+.
T Consensus 211 CG 212 (315)
T PRK10525 211 SG 212 (315)
T ss_pred cC
Confidence 43
No 144
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=20.43 E-value=3.9e+02 Score=30.18 Aligned_cols=66 Identities=9% Similarity=0.161 Sum_probs=42.5
Q ss_pred CCceEEEec---CCEEEEEEEecCCCCceeEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCccceEEecc
Q 009358 58 PGPRIVARE---GDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAH 132 (537)
Q Consensus 58 PgP~i~v~~---Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~vtq~~i~PG~~~~y~f~~~~~~Gt~wYH~h 132 (537)
+.|.++++. ...|+|+|.|....+..+|..--.. .++.| .+..|++|++.+..|.+ ...+ -||.--
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y-----~~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDLt 660 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAY-----GGAGP--RTVTVAPGQRVELHWDL-SASG-GWYDFT 660 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCC-----CCCCC--EEEEECCCCEEEEEEec-cCCC-CceEEE
Confidence 446677654 4569999999988888877763221 11222 13558999999999976 3222 577543
No 145
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=20.39 E-value=99 Score=22.82 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEEcCcCCC----ceEEEecCCEEEEE
Q 009358 49 SIITVNGQFPG----PRIVAREGDRLIIK 73 (537)
Q Consensus 49 ~~~~~NG~~Pg----P~i~v~~Gd~v~v~ 73 (537)
-+..+||++-. +...+++||+|+|-
T Consensus 32 vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 32 VAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred EEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 34668987644 78889999999874
Done!