BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009359
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/525 (60%), Positives = 402/525 (76%), Gaps = 4/525 (0%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
LA+AE+LG F VGG EY + LLPPLE+L TVEET VRDKAVESL I + D+
Sbjct: 67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
HF+PLVKRLA G+WFT+R S+CGLF V YP A+K ELR +R LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +D A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
+ ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
+ C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA I+P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 531
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/450 (21%), Positives = 183/450 (40%), Gaps = 49/450 (10%)
Query: 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTAR---VSSCG 147
LC+ + VR A L + +V IP+ LA+ E + R V +C
Sbjct: 170 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEAC- 228
Query: 148 LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207
++A E L+ + RQ +D VR A + V K++++ F
Sbjct: 229 -VNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAF 287
Query: 208 EELTQDDQDSVRLLAV----EGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 263
+ L +D + VR A E C L + ILP I D + V+ +A+
Sbjct: 288 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALAS 347
Query: 264 QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323
+ L +G + T ++P ++ L+D EVR+ + + ++ Q +LP
Sbjct: 348 VIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPA 407
Query: 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383
+ EL+ D+ VR A+ + +A LG + E+L + ++ L D +R S L
Sbjct: 408 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 467
Query: 384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443
++ + G + +++P ++ ++ D ++ R+ + C+
Sbjct: 468 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTL---------------------FCI- 505
Query: 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503
NV L+E G D +H++P VL M +P R + +++ +
Sbjct: 506 ---------------NV--LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548
Query: 504 PVMGSEITCSQLLPVVINASKDSESVAVTY 533
P++ + S++ P++ ++D + V V Y
Sbjct: 549 PILDNSTLQSEVKPILEKLTQD-QDVDVKY 577
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 168/416 (40%), Gaps = 50/416 (12%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANV---LLPPLETLCTVEETCVRDKAVESLCRI 113
+DD V A A +LG F LE NV ++P L + E+ VR AVE+ I
Sbjct: 175 SDDTPMVRRAAASKLGEFAKV---LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 231
Query: 114 GSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLF-HVAYPSAPEALKTELRTIYRQLC 172
+ ++D+ +P +++ A + + R F + PE KT+L ++ L
Sbjct: 232 AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 291
Query: 173 QDDMPMVRRSAATNLGKFAATVEA-----------------------AHLKSEIMSIFEE 209
+D VR +A+ + +F + A H+KS + S+
Sbjct: 292 KDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMG 351
Query: 210 LT--------------------QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249
L+ +D+ VRL + + +++ + +LP IV
Sbjct: 352 LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 411
Query: 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309
++D WRVR + + L +G E + + L D+ +R AA + K+
Sbjct: 412 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 471
Query: 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 472 KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 531
Query: 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 532 PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/525 (60%), Positives = 402/525 (76%), Gaps = 4/525 (0%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
LA+AE+LG F VGG EY + LLPPLE+L TVEET VRDKAVESL I + D+
Sbjct: 67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
HF+PLVKRLA G+WFT+R S+CGLF V YP A+K ELR +R LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +D A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
+ ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
+ C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA I+P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 531
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/450 (21%), Positives = 184/450 (40%), Gaps = 49/450 (10%)
Query: 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTAR---VSSCG 147
LC+ + VR A L + +V IP+ LA+ E + R V +C
Sbjct: 170 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEAC- 228
Query: 148 LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207
++A E L+ + RQ +D VR A + V K++++ F
Sbjct: 229 -VNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAF 287
Query: 208 EELTQDDQDSVRLLAV----EGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 263
+ L +D + VR A E C L ++ ILP I D + V+ +A+
Sbjct: 288 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALAS 347
Query: 264 QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323
+ L +G + T ++P ++ L+D EVR+ + + ++ Q +LP
Sbjct: 348 VIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPA 407
Query: 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383
+ EL+ D+ VR A+ + +A LG + E+L + ++ L D +R S L
Sbjct: 408 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 467
Query: 384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443
++ + G + +++P ++ ++ D ++ R+ + C+
Sbjct: 468 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTL---------------------FCI- 505
Query: 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503
NV L+E G D +H++P VL M +P R + +++ +
Sbjct: 506 ---------------NV--LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548
Query: 504 PVMGSEITCSQLLPVVINASKDSESVAVTY 533
P++ + S++ P++ ++D + V V Y
Sbjct: 549 PILDNSTLQSEVKPILEKLTQD-QDVDVKY 577
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 168/416 (40%), Gaps = 50/416 (12%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANV---LLPPLETLCTVEETCVRDKAVESLCRI 113
+DD V A A +LG F LE NV ++P L + E+ VR AVE+ I
Sbjct: 175 SDDTPMVRRAAASKLGEFAKV---LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 231
Query: 114 GSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLF-HVAYPSAPEALKTELRTIYRQLC 172
+ ++D+ +P +++ A + + R F + PE KT+L ++ L
Sbjct: 232 AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 291
Query: 173 QDDMPMVRRSAATNLGKFAATVEA-----------------------AHLKSEIMSIFEE 209
+D VR +A+ + +F + A H+KS + S+
Sbjct: 292 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 351
Query: 210 LT--------------------QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249
L+ +D+ VRL + + +++ + +LP IV
Sbjct: 352 LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 411
Query: 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309
++D WRVR + + L +G E + + L D+ +R AA + K+
Sbjct: 412 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 471
Query: 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 472 KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 531
Query: 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 532 PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/525 (60%), Positives = 402/525 (76%), Gaps = 4/525 (0%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
LA+AE+LG F VGG EY + LLPPLE+L TVEET VRDKAVESL I + D+
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
HF+PLVKRLA G+WFT+R S+CGLF V YP A+K ELR +R LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +D A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
+ ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
+ C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA I+P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 530
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/450 (21%), Positives = 184/450 (40%), Gaps = 49/450 (10%)
Query: 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTAR---VSSCG 147
LC+ + VR A L + +V IP+ LA+ E + R V +C
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEAC- 227
Query: 148 LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207
++A E L+ + RQ +D VR A + V K++++ F
Sbjct: 228 -VNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAF 286
Query: 208 EELTQDDQDSVRLLAV----EGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 263
+ L +D + VR A E C L ++ ILP I D + V+ +A+
Sbjct: 287 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALAS 346
Query: 264 QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323
+ L +G + T ++P ++ L+D EVR+ + + ++ Q +LP
Sbjct: 347 VIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPA 406
Query: 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383
+ EL+ D+ VR A+ + +A LG + E+L + ++ L D +R S L
Sbjct: 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466
Query: 384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443
++ + G + +++P ++ ++ D ++ R+ + C+
Sbjct: 467 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTL---------------------FCI- 504
Query: 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503
NV L+E G D +H++P VL M +P R + +++ +
Sbjct: 505 ---------------NV--LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547
Query: 504 PVMGSEITCSQLLPVVINASKDSESVAVTY 533
P++ + S++ P++ ++D + V V Y
Sbjct: 548 PILDNSTLQSEVKPILEKLTQD-QDVDVKY 576
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 168/416 (40%), Gaps = 50/416 (12%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANV---LLPPLETLCTVEETCVRDKAVESLCRI 113
+DD V A A +LG F LE NV ++P L + E+ VR AVE+ I
Sbjct: 174 SDDTPMVRRAAASKLGEFAKV---LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 114 GSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLF-HVAYPSAPEALKTELRTIYRQLC 172
+ ++D+ +P +++ A + + R F + PE KT+L ++ L
Sbjct: 231 AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Query: 173 QDDMPMVRRSAATNLGKFAATVEA-----------------------AHLKSEIMSIFEE 209
+D VR +A+ + +F + A H+KS + S+
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350
Query: 210 LT--------------------QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249
L+ +D+ VRL + + +++ + +LP IV
Sbjct: 351 LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 410
Query: 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309
++D WRVR + + L +G E + + L D+ +R AA + K+
Sbjct: 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 471 KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 530
Query: 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 531 PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/525 (60%), Positives = 402/525 (76%), Gaps = 4/525 (0%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
LA+AE+LG F VGG EY + LLPPLE+L TVEET VRDKAVESL I + D+
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
HF+PLVKRLA G+WFT+R S+CGLF V YP A+K ELR +R LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +D A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
+ ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
+ C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA I+P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 530
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/450 (21%), Positives = 183/450 (40%), Gaps = 49/450 (10%)
Query: 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTAR---VSSCG 147
LC+ + VR A L + +V IP+ LA+ E + R V +C
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEAC- 227
Query: 148 LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207
++A E L+ + RQ +D VR A + V K++++ F
Sbjct: 228 -VNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAF 286
Query: 208 EELTQDDQDSVRLLAV----EGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 263
+ L +D + VR A E C L + ILP I D + V+ +A+
Sbjct: 287 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALAS 346
Query: 264 QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323
+ L +G + T ++P ++ L+D EVR+ + + ++ Q +LP
Sbjct: 347 VIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPA 406
Query: 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383
+ EL+ D+ VR A+ + +A LG + E+L + ++ L D +R S L
Sbjct: 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466
Query: 384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443
++ + G + +++P ++ ++ D ++ R+ + C+
Sbjct: 467 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTL---------------------FCI- 504
Query: 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503
NV L+E G D +H++P VL M +P R + +++ +
Sbjct: 505 ---------------NV--LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547
Query: 504 PVMGSEITCSQLLPVVINASKDSESVAVTY 533
P++ + S++ P++ ++D + V V Y
Sbjct: 548 PILDNSTLQSEVKPILEKLTQD-QDVDVKY 576
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 168/416 (40%), Gaps = 50/416 (12%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANV---LLPPLETLCTVEETCVRDKAVESLCRI 113
+DD V A A +LG F LE NV ++P L + E+ VR AVE+ I
Sbjct: 174 SDDTPMVRRAAASKLGEFAKV---LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 114 GSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLF-HVAYPSAPEALKTELRTIYRQLC 172
+ ++D+ +P +++ A + + R F + PE KT+L ++ L
Sbjct: 231 AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Query: 173 QDDMPMVRRSAATNLGKFAATVEA-----------------------AHLKSEIMSIFEE 209
+D VR +A+ + +F + A H+KS + S+
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMG 350
Query: 210 LT--------------------QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249
L+ +D+ VRL + + +++ + +LP IV
Sbjct: 351 LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 410
Query: 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309
++D WRVR + + L +G E + + L D+ +R AA + K+
Sbjct: 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 471 KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 530
Query: 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 531 PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 637 bits (1642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/522 (60%), Positives = 400/522 (76%), Gaps = 4/522 (0%)
Query: 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVLLA+
Sbjct: 3 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 62
Query: 68 AEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFI 127
AE+LG F VGG EY + LLPPLE+L TVEET VRDKAVESL I + D+ HF+
Sbjct: 63 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNL 187
PLVKRLA G+WFT+R S+CGLF V YP A+K ELR +R LC DD PMVRR+AA+ L
Sbjct: 123 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 182
Query: 188 GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247
G+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 183 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 242
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307
++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEVR AA+ KV +
Sbjct: 243 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 302
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 363
C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+F
Sbjct: 303 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 362
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
L+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PL
Sbjct: 363 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 422
Query: 424 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483
LA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA I+P+VL M
Sbjct: 423 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 482
Query: 484 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525
+P+YL+RMT L I++L+ V G +IT +LP V+ + D
Sbjct: 483 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 524
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/450 (21%), Positives = 184/450 (40%), Gaps = 49/450 (10%)
Query: 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTAR---VSSCG 147
LC+ + VR A L + +V IP+ LA+ E + R V +C
Sbjct: 163 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEAC- 221
Query: 148 LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207
++A E L+ + RQ +D VR A + V K++++ F
Sbjct: 222 -VNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAF 280
Query: 208 EELTQDDQDSVRLLAV----EGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 263
+ L +D + VR A E C L ++ ILP I D + V+ +A+
Sbjct: 281 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALAS 340
Query: 264 QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323
+ L +G + T ++P ++ L+D EVR+ + + ++ Q +LP
Sbjct: 341 VIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPA 400
Query: 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383
+ EL+ D+ VR A+ + +A LG + E+L + ++ L D +R S L
Sbjct: 401 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 460
Query: 384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443
++ + G + +++P ++ ++ D ++ R+ + C+
Sbjct: 461 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTL---------------------FCI- 498
Query: 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503
NV L+E G D +H++P VL M +P R + +++ +
Sbjct: 499 ---------------NV--LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 541
Query: 504 PVMGSEITCSQLLPVVINASKDSESVAVTY 533
P++ + S++ P++ ++D + V V Y
Sbjct: 542 PILDNSTLQSEVKPILEKLTQD-QDVDVKY 570
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 168/416 (40%), Gaps = 50/416 (12%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANV---LLPPLETLCTVEETCVRDKAVESLCRI 113
+DD V A A +LG F LE NV ++P L + E+ VR AVE+ I
Sbjct: 168 SDDTPMVRRAAASKLGEFAKV---LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 224
Query: 114 GSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLF-HVAYPSAPEALKTELRTIYRQLC 172
+ ++D+ +P +++ A + + R F + PE KT+L ++ L
Sbjct: 225 AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 284
Query: 173 QDDMPMVRRSAATNLGKFAATVEA-----------------------AHLKSEIMSIFEE 209
+D VR +A+ + +F + A H+KS + S+
Sbjct: 285 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 344
Query: 210 LT--------------------QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249
L+ +D+ VRL + + +++ + +LP IV
Sbjct: 345 LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 404
Query: 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309
++D WRVR + + L +G E + + L D+ +R AA + K+
Sbjct: 405 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 464
Query: 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 465 KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 524
Query: 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 525 PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/522 (60%), Positives = 400/522 (76%), Gaps = 4/522 (0%)
Query: 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVLLA+
Sbjct: 1 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 68 AEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFI 127
AE+LG F VGG EY + LLPPLE+L TVEET VRDKAVESL I + D+ HF+
Sbjct: 61 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNL 187
PLVKRLA G+WFT+R S+CGLF V YP A+K ELR +R LC DD PMVRR+AA+ L
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 188 GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247
G+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307
++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEVR AA+ KV +
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 300
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 363
C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+F
Sbjct: 301 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 360
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
L+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PL
Sbjct: 361 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 420
Query: 424 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483
LA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA I+P+VL M
Sbjct: 421 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 480
Query: 484 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525
+P+YL+RMT L I++L+ V G +IT +LP V+ + D
Sbjct: 481 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 522
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/450 (21%), Positives = 184/450 (40%), Gaps = 49/450 (10%)
Query: 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTAR---VSSCG 147
LC+ + VR A L + +V IP+ LA+ E + R V +C
Sbjct: 161 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEAC- 219
Query: 148 LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207
++A E L+ + RQ +D VR A + V K++++ F
Sbjct: 220 -VNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAF 278
Query: 208 EELTQDDQDSVRLLAV----EGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 263
+ L +D + VR A E C L ++ ILP I D + V+ +A+
Sbjct: 279 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALAS 338
Query: 264 QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323
+ L +G + T ++P ++ L+D EVR+ + + ++ Q +LP
Sbjct: 339 VIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPA 398
Query: 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383
+ EL+ D+ VR A+ + +A LG + E+L + ++ L D +R S L
Sbjct: 399 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 458
Query: 384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443
++ + G + +++P ++ ++ D ++ R+ + C+
Sbjct: 459 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTL---------------------FCI- 496
Query: 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503
NV L+E G D +H++P VL M +P R + +++ +
Sbjct: 497 ---------------NV--LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 539
Query: 504 PVMGSEITCSQLLPVVINASKDSESVAVTY 533
P++ + S++ P++ ++D + V V Y
Sbjct: 540 PILDNSTLQSEVKPILEKLTQD-QDVDVKY 568
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 168/416 (40%), Gaps = 50/416 (12%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANV---LLPPLETLCTVEETCVRDKAVESLCRI 113
+DD V A A +LG F LE NV ++P L + E+ VR AVE+ I
Sbjct: 166 SDDTPMVRRAAASKLGEFAKV---LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 222
Query: 114 GSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLF-HVAYPSAPEALKTELRTIYRQLC 172
+ ++D+ +P +++ A + + R F + PE KT+L ++ L
Sbjct: 223 AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 282
Query: 173 QDDMPMVRRSAATNLGKFAATVEA-----------------------AHLKSEIMSIFEE 209
+D VR +A+ + +F + A H+KS + S+
Sbjct: 283 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 342
Query: 210 LT--------------------QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249
L+ +D+ VRL + + +++ + +LP IV
Sbjct: 343 LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 402
Query: 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309
++D WRVR + + L +G E + + L D+ +R AA + K+
Sbjct: 403 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 462
Query: 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 463 KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 522
Query: 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 523 PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 578
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 615 bits (1585), Expect = e-176, Method: Compositional matrix adjust.
Identities = 308/524 (58%), Positives = 389/524 (74%), Gaps = 4/524 (0%)
Query: 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVLL
Sbjct: 1 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 66 AMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEH 125
A+AE+LG F VGG EY + LLPPLE+L TVEET VRDKAVESL I + D+ H
Sbjct: 61 ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAAT 185
F+PLVKRLA G+WFT+R S+CGLF V YP A+K ELR +R LC DD P VRR+AA+
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 186 NLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV 245
LG+FA +E ++KSEI+ F L D+QDSVRLLAVE C + +LL +D A + P
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPT 240
Query: 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT 305
+ ++DKSWRVRY VA++ EL +AVGPE T++D+VPA+ L +D EAEVR AA+ KV
Sbjct: 241 LRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300
Query: 306 KICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 361
+ C L+ + + ILPC+KEL SD++QHV+SALA+VI G++PILGKD TIE LLP
Sbjct: 301 EFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLP 360
Query: 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421
+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 361 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYX 420
Query: 422 PLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL 481
PLLA QLGV FFD+KL +LC WL D VY+IR+AA +N+K+L E+FG +WA I+P+VL
Sbjct: 421 PLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 482 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525
+P+YL+R T L I++L+ V G +IT LP V+ + D
Sbjct: 481 AXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGD 524
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 144/348 (41%), Gaps = 5/348 (1%)
Query: 184 ATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243
A LG F V ++ E L ++ VR AVE A+ P D AH +
Sbjct: 63 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 303
P++ + W A L+ +C ++++ + L D+ VR AAA K
Sbjct: 123 PLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAASK 181
Query: 304 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 363
+ + ++L + I+P L+SD VR + +A +L ++ + P
Sbjct: 182 LGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTL 241
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA----IIE 419
+D+ VR + K ++ + +G ++ L+PA L +D VR A + E
Sbjct: 242 RQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKE 301
Query: 420 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 479
+ L++ ++ + + D ++ A A+ + L+ G D ++H++P
Sbjct: 302 FCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPL 361
Query: 480 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSE 527
L + + R+ I+ + + V+G LLP ++ ++D++
Sbjct: 362 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 409
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 163/416 (39%), Gaps = 50/416 (12%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANV---LLPPLETLCTVEETCVRDKAVESLCRI 113
+DD V A A +LG F LE NV ++P L + E+ VR AVE+ I
Sbjct: 168 SDDTPXVRRAAASKLGEFAKV---LELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNI 224
Query: 114 GSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLF-HVAYPSAPEALKTELRTIYRQLC 172
+ ++D+ P +++ A + + R F + PE KT+L ++ L
Sbjct: 225 AQLLPQEDLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLX 284
Query: 173 QDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGA 228
+D VR +A+ + +F + A + S+I+ +EL D V+
Sbjct: 285 KDCEAEVRAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXG 344
Query: 229 LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRL 288
L +L + + H+LP+ + +D+ VR + + L + E +G ++PA V L
Sbjct: 345 LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 404
Query: 289 LRDNEAEVRIA---------------------------------------AAGKVTKICR 309
D + VR+A A + K+
Sbjct: 405 AEDAKWRVRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVE 464
Query: 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369
E A I+P V S D + R I ++ + G+D T + LP L D
Sbjct: 465 KFGKEWAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGD 524
Query: 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 525 PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 121/166 (72%)
Query: 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419
+ + + L++E +RLN I KL + +G++ LSQSLLPAIVELAED WRVRLAIIE
Sbjct: 9 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 420 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 479
Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA I+P+
Sbjct: 69 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 480 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525
VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 174
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 12/230 (5%)
Query: 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-EVLLA 66
LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ER + L+P + E +D V LA
Sbjct: 6 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLA 65
Query: 67 MAEELGVFIPYVGGLEYANVLLPPLETLCTV----EETCVRDKAVESLCRIGSQMREQDV 122
+ E ++P + G L +LC +R+ A +L ++ + ++
Sbjct: 66 IIE----YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 121
Query: 123 VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTE--LRTIYRQLCQDDMPMVR 180
IP V ++ + R+++ +V + + T+ L T+ R + D + VR
Sbjct: 122 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLR-MAGDPVANVR 180
Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230
+ A +L K ++ + L+SE+ I E+LTQD V+ A E L
Sbjct: 181 FNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 230
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 1/223 (0%)
Query: 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 262
I + +EL +D +RL +++ + L + +LP IV ++D WRVR +
Sbjct: 9 IAVLIDELRNEDV-QLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAII 67
Query: 263 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 322
+ L +G E + + L D+ +R AA + K+ E A I+P
Sbjct: 68 EYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 127
Query: 323 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 128 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL 187
Query: 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 188 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 230
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 291
D V H+LP I ++ W RY A + C GPEP++ +P + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 292 NEAEVRIAAAGKVTKICRILNPELAIQHI 320
VR AA V +IC +L PE AI +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 291
D V H+LP I ++ W RY A + C GPEP++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKICRILNPELAIQHI 320
VR AA V +IC +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 291
D V H+LP I ++ W RY A + C GPEP++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKICRILNPELAIQHI 320
VR AA V +IC +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 25/185 (13%)
Query: 158 EALKTELRTI-------YRQLCQDDMPM-VRRSAATNLGKFAATVEAAHLKSEIMSIFEE 209
EA+K+++ + + +C ++M + + S A G+ + K + +
Sbjct: 266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325
Query: 210 LTQ---DDQDSVRLLAVEGCGALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYM 260
LTQ ++ C A G L D V H+LP I ++ W RY
Sbjct: 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYR 383
Query: 261 VANQLYELCEAVGPEPTR-----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 315
A + C GPEP++ +P + L++D VR AA V +IC +L PE
Sbjct: 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEA 442
Query: 316 AIQHI 320
AI +
Sbjct: 443 AINDV 447
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 475 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 522
H++P + E I NP + YR + A + + G E SQL P+VI A
Sbjct: 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCI--LEGPEP--SQLKPLVIQA 409
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 25/185 (13%)
Query: 158 EALKTELRTI-------YRQLCQDDMPM-VRRSAATNLGKFAATVEAAHLKSEIMSIFEE 209
EA+K+++ + + +C ++M + + S A G+ + K + +
Sbjct: 266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325
Query: 210 LTQ---DDQDSVRLLAVEGCGALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYM 260
LTQ ++ C A G L D V H+LP I ++ W RY
Sbjct: 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYR 383
Query: 261 VANQLYELCEAVGPEPTR-----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 315
A + C GPEP++ +P + L++D VR AA V +IC +L PE
Sbjct: 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEA 442
Query: 316 AIQHI 320
AI +
Sbjct: 443 AINDV 447
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 475 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 522
H++P + E I NP + YR + A + + G E SQL P+VI A
Sbjct: 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCI--LEGPEP--SQLKPLVIQA 409
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 291
D V H+LP I ++ WR R + E GPEP + +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILE--GPEPNQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKICRILNPELAIQHI 320
VR A V +IC +L PE AI +
Sbjct: 420 PSVVVRDTTAWTVGRICELL-PEAAINDV 447
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 291
D V H+LP I ++ WR R + E GPEP + P + L +D
Sbjct: 368 DIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILE--GPEPNQLKPLVIQAXPTLIELXKD 425
Query: 292 NEAEVRIAAAGKVTKICRILNPELAIQHI 320
VR A V +IC +L PE AI +
Sbjct: 426 PSVVVRDTTAWTVGRICELL-PEAAINDV 453
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 24/176 (13%)
Query: 158 EALKTELRTI-------YRQLCQDDMPM-VRRSAATNLGKFAATVEAAHLKSEIMSIFEE 209
EA+K+++ + + +C ++M + + S A G+ + K + +
Sbjct: 266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325
Query: 210 LTQ---DDQDSVRLLAVEGCGALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYM 260
LTQ ++ C A G L D V H+LP I ++ W RY
Sbjct: 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYR 383
Query: 261 VANQLYELCEAVGPEPTR-----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311
A + C GPEP++ +P + L++D VR AA V +IC +L
Sbjct: 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 475 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 522
H++P + E I NP + YR + A + + G E SQL P+VI A
Sbjct: 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCI--LEGPEP--SQLKPLVIQA 409
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
+ + I L++D +R + L I G+ER + LI L D+D V A A+
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKAL---KDEDAWVRRAAADA 73
Query: 71 LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLV 130
LG G E A + PL E+ VR A +L +IG + VE PL+
Sbjct: 74 LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDER----AVE---PLI 118
Query: 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKF 190
K L +WF ++ L + A E L L+ D+ VR+SAA LG+
Sbjct: 119 KALKDEDWFVRIAAAFALGEIGDERAVEPLIKALK--------DEDGWVRQSAADALGEI 170
Query: 191 AA 192
Sbjct: 171 GG 172
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 28/188 (14%)
Query: 155 SAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD 214
+AP E +Y + QDD VRR+AA LGK + + + + L +D
Sbjct: 11 AAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDED 63
Query: 215 QDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274
VR A + G +G D A + P+I + W VR A L ++ +
Sbjct: 64 A-WVRRAAADALGQIG------DERA-VEPLIKALKDEDGW-VRQSAAVALGQIGDERAV 114
Query: 275 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH 334
EP ++ L+D + VRIAAA + +I E A++ ++ +K+ Q
Sbjct: 115 EPL--------IKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQS 162
Query: 335 VRSALATV 342
AL +
Sbjct: 163 AADALGEI 170
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 276 PTRSD--VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 333
P R+D V Y++ L+D+ VR AAA + KI E A++ ++ +K D
Sbjct: 13 PLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKALK----DEDA 64
Query: 334 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393
VR A A + +G + +E L + LKDE VR + L Q+ ++
Sbjct: 65 WVRRAAADAL----GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQIGDERAVEP 116
Query: 394 LSQSLLPAIVELAEDRHWRVRLA 416
L ++L +D W VR+A
Sbjct: 117 LIKAL--------KDEDWFVRIA 131
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
+ + I L++D +R + L I G+ER + LI L D+D V A A+
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKAL---KDEDAWVRRAAADA 68
Query: 71 LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLV 130
LG G E A + PL E+ VR A +L +IG + VE PL+
Sbjct: 69 LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDER----AVE---PLI 113
Query: 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKF 190
K L +WF ++ L + A E L L+ D+ VR+SAA LG+
Sbjct: 114 KALKDEDWFVRIAAAFALGEIGDERAVEPLIKALK--------DEDGWVRQSAADALGEI 165
Query: 191 AA 192
Sbjct: 166 GG 167
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGC 226
+Y + QDD VRR+AA LGK + + + + L +D VR A +
Sbjct: 18 MYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDA-WVRRAAADAL 69
Query: 227 GALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV 286
G +G D A + P+I + W VR A L ++ + EP +
Sbjct: 70 GQIG------DERA-VEPLIKALKDEDGW-VRQSAAVALGQIGDERAVEP--------LI 113
Query: 287 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATV 342
+ L+D + VRIAAA + +I E A++ ++ +K+ Q AL +
Sbjct: 114 KALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAADALGEI 165
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 289 LRDNEAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMG 345
L D A VR A + C+ I +P++ Q + D S +VR A A I
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAI-- 152
Query: 346 MAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405
++ ATI P+ ++LLKD DVR N + +N+ D+ VE
Sbjct: 153 --SVINDKATI----PLLINLLKDPNGDVR-NWAAFAININKYDNSDIRD-----CFVEX 200
Query: 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLKDKVY 450
+D++ VR+ I +G+ + DK L LC + K+ VY
Sbjct: 201 LQDKNEEVRIEAI---------IGLSYRKDKRVLSVLCDELKKNTVY 238
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 340
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+
Sbjct: 43 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILS 78
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 340
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILS 54
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 340
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILS 54
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 340
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILS 54
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 340
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILS 54
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 340
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILS 56
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 340
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILS 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,388,469
Number of Sequences: 62578
Number of extensions: 565103
Number of successful extensions: 1797
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 84
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)