Query 009359
Match_columns 536
No_of_seqs 244 out of 2148
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 12:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 3.8E-46 8.3E-51 366.9 36.9 527 6-532 79-614 (759)
2 KOG0211 Protein phosphatase 2A 100.0 8.2E-34 1.8E-38 280.0 35.8 488 18-505 168-665 (759)
3 KOG2171 Karyopherin (importin) 100.0 1.4E-30 3E-35 258.9 47.6 507 9-523 4-615 (1075)
4 KOG2023 Nuclear transport rece 100.0 1.9E-27 4.2E-32 221.9 37.1 510 6-521 10-748 (885)
5 KOG2171 Karyopherin (importin) 100.0 1.3E-25 2.9E-30 223.7 45.1 468 14-482 84-613 (1075)
6 KOG1241 Karyopherin (importin) 100.0 2.1E-25 4.7E-30 211.7 37.2 504 14-523 61-732 (859)
7 KOG0213 Splicing factor 3b, su 100.0 2.7E-24 5.9E-29 203.1 37.7 519 9-535 363-1057(1172)
8 KOG2023 Nuclear transport rece 100.0 3.3E-25 7.1E-30 207.1 30.5 480 43-530 9-579 (885)
9 KOG1241 Karyopherin (importin) 99.9 3.6E-21 7.8E-26 183.3 35.9 513 13-526 94-792 (859)
10 KOG0213 Splicing factor 3b, su 99.9 8.1E-21 1.8E-25 179.9 37.3 476 16-505 483-1066(1172)
11 PF01602 Adaptin_N: Adaptin N 99.9 4.1E-21 8.8E-26 194.8 36.7 499 12-534 10-515 (526)
12 COG5181 HSH155 U2 snRNP splice 99.9 5.2E-21 1.1E-25 177.7 33.1 507 9-530 168-899 (975)
13 PLN03200 cellulose synthase-in 99.9 3E-19 6.5E-24 192.6 43.0 513 10-530 190-796 (2102)
14 PF01602 Adaptin_N: Adaptin N 99.9 5.2E-20 1.1E-24 186.8 33.3 473 10-503 43-523 (526)
15 KOG1242 Protein containing ada 99.9 1.9E-19 4E-24 169.7 34.0 508 19-534 27-555 (569)
16 COG5215 KAP95 Karyopherin (imp 99.9 4.7E-18 1E-22 157.1 40.2 507 14-521 99-730 (858)
17 PRK09687 putative lyase; Provi 99.9 3.4E-20 7.5E-25 167.2 23.2 252 165-461 25-278 (280)
18 PLN03200 cellulose synthase-in 99.9 1.6E-18 3.5E-23 187.1 39.4 511 11-532 276-849 (2102)
19 PRK13800 putative oxidoreducta 99.9 5.7E-20 1.2E-24 194.0 27.5 275 164-501 622-896 (897)
20 PTZ00429 beta-adaptin; Provisi 99.9 1.9E-17 4E-22 166.9 43.8 494 10-534 33-537 (746)
21 KOG1242 Protein containing ada 99.9 3.5E-18 7.5E-23 161.2 34.9 432 90-527 21-466 (569)
22 COG5215 KAP95 Karyopherin (imp 99.9 5.1E-17 1.1E-21 150.3 40.0 472 56-528 103-694 (858)
23 PRK09687 putative lyase; Provi 99.9 9.3E-20 2E-24 164.4 21.9 254 203-501 24-279 (280)
24 KOG1824 TATA-binding protein-i 99.9 4.3E-17 9.2E-22 159.0 39.9 512 13-528 9-625 (1233)
25 KOG1824 TATA-binding protein-i 99.8 1.2E-16 2.5E-21 156.0 40.1 467 58-526 144-746 (1233)
26 PRK13800 putative oxidoreducta 99.8 1.2E-18 2.6E-23 184.1 27.1 274 127-462 623-896 (897)
27 COG5181 HSH155 U2 snRNP splice 99.8 1.8E-16 3.9E-21 148.0 37.3 499 17-532 289-936 (975)
28 PTZ00429 beta-adaptin; Provisi 99.8 1.4E-15 3E-20 153.5 44.6 475 1-503 60-545 (746)
29 KOG0212 Uncharacterized conser 99.8 6.3E-17 1.4E-21 149.6 31.4 421 97-519 11-459 (675)
30 KOG1240 Protein kinase contain 99.8 1.5E-17 3.2E-22 166.1 23.1 271 176-446 436-745 (1431)
31 KOG0915 Uncharacterized conser 99.8 3.7E-16 8E-21 159.8 31.0 468 56-526 827-1368(1702)
32 KOG0212 Uncharacterized conser 99.8 2.2E-16 4.9E-21 146.0 26.6 365 168-533 5-396 (675)
33 KOG1240 Protein kinase contain 99.8 2E-17 4.3E-22 165.2 20.3 279 242-520 423-741 (1431)
34 KOG0915 Uncharacterized conser 99.7 1.3E-13 2.8E-18 141.7 37.5 403 99-507 970-1430(1702)
35 KOG0166 Karyopherin (importin) 99.7 6.8E-15 1.5E-19 138.5 24.9 342 165-506 68-438 (514)
36 KOG0166 Karyopherin (importin) 99.7 6.8E-14 1.5E-18 131.8 27.3 341 160-502 106-484 (514)
37 KOG1060 Vesicle coat complex A 99.6 2.8E-12 6.1E-17 123.7 34.5 458 11-503 37-532 (968)
38 KOG4224 Armadillo repeat prote 99.6 3.4E-14 7.3E-19 124.9 18.9 341 47-389 85-448 (550)
39 KOG1061 Vesicle coat complex A 99.6 4.4E-13 9.5E-18 130.0 27.1 474 7-503 11-527 (734)
40 PF10508 Proteasom_PSMB: Prote 99.6 1.1E-11 2.4E-16 122.6 36.3 401 130-533 43-494 (503)
41 KOG1943 Beta-tubulin folding c 99.5 2.5E-10 5.5E-15 114.6 37.0 486 10-505 342-882 (1133)
42 PF10508 Proteasom_PSMB: Prote 99.5 1E-10 2.3E-15 115.7 32.9 366 101-467 53-464 (503)
43 COG1413 FOG: HEAT repeat [Ener 99.5 8.9E-11 1.9E-15 111.6 27.0 277 163-501 43-332 (335)
44 KOG4224 Armadillo repeat prote 99.4 5.3E-12 1.1E-16 111.3 15.8 343 163-506 85-448 (550)
45 KOG1062 Vesicle coat complex A 99.4 1.2E-09 2.6E-14 106.5 32.5 426 56-502 116-579 (866)
46 KOG1060 Vesicle coat complex A 99.4 9.2E-10 2E-14 106.8 31.1 462 3-495 65-562 (968)
47 COG5240 SEC21 Vesicle coat com 99.4 3.4E-10 7.5E-15 105.9 26.9 294 159-464 260-554 (898)
48 KOG2259 Uncharacterized conser 99.4 3.5E-10 7.5E-15 107.6 25.2 291 160-469 195-515 (823)
49 COG5064 SRP1 Karyopherin (impo 99.4 3.6E-11 7.8E-16 105.2 16.4 305 201-505 113-444 (526)
50 COG5240 SEC21 Vesicle coat com 99.4 9.5E-09 2.1E-13 96.5 32.7 295 197-503 259-554 (898)
51 KOG1943 Beta-tubulin folding c 99.4 1.9E-08 4.2E-13 101.4 37.1 428 85-514 340-848 (1133)
52 KOG1248 Uncharacterized conser 99.4 6.1E-08 1.3E-12 99.0 40.8 474 30-510 371-904 (1176)
53 COG1413 FOG: HEAT repeat [Ener 99.4 6.1E-10 1.3E-14 105.8 25.5 275 127-462 45-332 (335)
54 KOG1062 Vesicle coat complex A 99.3 4.3E-08 9.2E-13 96.0 36.7 401 91-508 112-548 (866)
55 TIGR02270 conserved hypothetic 99.3 6.3E-10 1.4E-14 105.6 23.5 240 164-464 55-295 (410)
56 KOG2259 Uncharacterized conser 99.3 3.1E-10 6.8E-15 107.9 20.2 243 280-535 198-467 (823)
57 TIGR02270 conserved hypothetic 99.3 1.1E-09 2.4E-14 103.9 23.7 242 202-504 54-296 (410)
58 COG5096 Vesicle coat complex, 99.3 1.3E-07 2.7E-12 94.6 38.1 473 11-507 20-522 (757)
59 COG5064 SRP1 Karyopherin (impo 99.3 3.3E-10 7.2E-15 99.3 17.4 302 164-465 115-443 (526)
60 KOG1020 Sister chromatid cohes 99.3 6.3E-08 1.4E-12 100.9 35.8 480 12-507 819-1408(1692)
61 KOG1061 Vesicle coat complex A 99.3 1.8E-09 3.8E-14 105.4 22.9 480 4-507 81-571 (734)
62 KOG1059 Vesicle coat complex A 99.3 2.3E-07 5.1E-12 89.7 36.5 276 95-387 118-401 (877)
63 KOG1078 Vesicle coat complex C 99.2 1.9E-07 4.2E-12 91.3 32.0 456 46-534 63-523 (865)
64 PF12348 CLASP_N: CLASP N term 99.2 3.8E-09 8.2E-14 94.4 19.0 194 87-314 8-211 (228)
65 KOG1991 Nuclear transport rece 99.2 3.1E-06 6.7E-11 85.4 40.3 148 377-525 391-558 (1010)
66 PF12348 CLASP_N: CLASP N term 99.1 7.7E-09 1.7E-13 92.3 20.1 186 282-470 9-211 (228)
67 KOG1078 Vesicle coat complex C 99.1 4.2E-08 9E-13 95.7 24.8 289 160-464 242-531 (865)
68 KOG1243 Protein kinase [Genera 99.1 8.2E-10 1.8E-14 106.7 12.8 255 251-507 264-518 (690)
69 KOG1020 Sister chromatid cohes 99.1 2.9E-06 6.4E-11 89.0 38.9 444 89-535 819-1397(1692)
70 KOG1058 Vesicle coat complex C 99.1 9.8E-07 2.1E-11 86.0 32.8 219 280-507 243-466 (948)
71 KOG1243 Protein kinase [Genera 99.1 3.9E-09 8.4E-14 102.1 15.7 253 214-468 266-518 (690)
72 KOG1059 Vesicle coat complex A 99.0 3.6E-06 7.8E-11 81.8 32.5 221 81-309 139-365 (877)
73 KOG1058 Vesicle coat complex C 99.0 1E-06 2.3E-11 85.8 29.0 431 11-467 22-465 (948)
74 KOG1248 Uncharacterized conser 99.0 2.2E-06 4.8E-11 88.0 31.8 351 49-400 519-910 (1176)
75 COG5096 Vesicle coat complex, 99.0 1.7E-05 3.8E-10 79.7 37.4 449 1-468 47-522 (757)
76 KOG4535 HEAT and armadillo rep 98.9 1.6E-06 3.5E-11 80.2 26.2 252 256-507 270-606 (728)
77 KOG1820 Microtubule-associated 98.9 5.1E-07 1.1E-11 92.0 25.1 335 126-470 64-448 (815)
78 KOG1991 Nuclear transport rece 98.9 9.6E-05 2.1E-09 75.0 40.2 416 20-445 15-553 (1010)
79 KOG1820 Microtubule-associated 98.9 5.4E-07 1.2E-11 91.8 24.2 193 315-511 249-450 (815)
80 KOG1077 Vesicle coat complex A 98.9 5.1E-05 1.1E-09 73.9 35.8 63 437-501 522-584 (938)
81 KOG1992 Nuclear export recepto 98.9 3.8E-05 8.2E-10 76.1 33.4 418 7-430 3-531 (960)
82 KOG2274 Predicted importin 9 [ 98.8 0.0002 4.3E-09 72.0 39.5 501 10-523 5-668 (1005)
83 PF12460 MMS19_C: RNAPII trans 98.8 7.7E-05 1.7E-09 72.7 35.2 203 263-467 169-396 (415)
84 PF12460 MMS19_C: RNAPII trans 98.8 2.9E-05 6.3E-10 75.7 31.0 287 99-387 56-394 (415)
85 KOG1992 Nuclear export recepto 98.8 1.5E-05 3.3E-10 78.8 27.9 440 48-508 6-531 (960)
86 KOG2062 26S proteasome regulat 98.8 3E-05 6.4E-10 75.9 29.2 126 396-534 518-644 (929)
87 KOG0413 Uncharacterized conser 98.7 9.3E-05 2E-09 74.6 32.4 146 372-522 945-1091(1529)
88 KOG1077 Vesicle coat complex A 98.7 0.00037 8.1E-09 68.1 35.2 429 13-462 115-584 (938)
89 PF12755 Vac14_Fab1_bd: Vacuol 98.7 2.2E-07 4.7E-12 68.7 10.3 87 142-229 3-94 (97)
90 KOG4413 26S proteasome regulat 98.7 7.1E-05 1.5E-09 66.3 26.8 341 104-465 61-439 (524)
91 KOG0567 HEAT repeat-containing 98.7 5.6E-06 1.2E-10 70.9 19.4 222 243-504 38-280 (289)
92 PF12755 Vac14_Fab1_bd: Vacuol 98.7 1E-07 2.3E-12 70.4 8.0 83 218-300 2-88 (97)
93 KOG4535 HEAT and armadillo rep 98.7 0.00013 2.8E-09 68.0 28.8 451 17-467 4-605 (728)
94 KOG2137 Protein kinase [Signal 98.7 3.4E-06 7.3E-11 82.7 19.6 231 254-487 286-520 (700)
95 KOG2137 Protein kinase [Signal 98.7 2.1E-06 4.7E-11 84.0 18.1 238 293-533 286-527 (700)
96 KOG2062 26S proteasome regulat 98.6 2.4E-05 5.2E-10 76.5 24.8 282 144-454 398-683 (929)
97 KOG0414 Chromosome condensatio 98.6 0.0011 2.4E-08 68.9 38.5 135 394-535 916-1056(1251)
98 PF12717 Cnd1: non-SMC mitotic 98.6 5.5E-06 1.2E-10 70.2 17.8 111 216-329 2-112 (178)
99 PF13001 Ecm29: Proteasome sta 98.6 2.3E-05 5E-10 77.9 24.7 403 89-505 27-489 (501)
100 PF13646 HEAT_2: HEAT repeats; 98.6 3.1E-07 6.7E-12 68.1 8.9 85 166-266 2-88 (88)
101 PF05804 KAP: Kinesin-associat 98.6 9.2E-05 2E-09 75.2 28.0 371 144-521 268-676 (708)
102 PF05804 KAP: Kinesin-associat 98.5 0.00011 2.4E-09 74.6 27.5 361 165-534 252-640 (708)
103 KOG0567 HEAT repeat-containing 98.5 3.5E-05 7.7E-10 66.2 20.1 219 205-464 39-279 (289)
104 PF04826 Arm_2: Armadillo-like 98.5 1.4E-05 3.1E-10 70.9 18.8 190 281-470 13-210 (254)
105 PF13646 HEAT_2: HEAT repeats; 98.5 7.6E-07 1.7E-11 65.9 9.2 55 362-424 3-58 (88)
106 KOG4653 Uncharacterized conser 98.5 1.6E-05 3.5E-10 79.1 20.2 219 163-387 727-964 (982)
107 KOG2032 Uncharacterized conser 98.5 0.00028 6E-09 66.3 26.8 259 239-504 256-531 (533)
108 KOG2025 Chromosome condensatio 98.5 7.4E-05 1.6E-09 72.9 23.9 69 201-269 84-154 (892)
109 PF04826 Arm_2: Armadillo-like 98.5 2E-05 4.4E-10 70.0 18.3 207 328-534 22-253 (254)
110 KOG1293 Proteins containing ar 98.5 0.0011 2.4E-08 64.6 30.9 373 160-534 92-524 (678)
111 KOG0413 Uncharacterized conser 98.5 0.0014 2.9E-08 66.6 31.5 142 334-480 946-1088(1529)
112 PF12717 Cnd1: non-SMC mitotic 98.4 3.9E-05 8.4E-10 65.1 18.2 107 294-403 2-108 (178)
113 PF05918 API5: Apoptosis inhib 98.4 1.6E-05 3.6E-10 77.4 17.4 264 254-528 35-320 (556)
114 KOG2032 Uncharacterized conser 98.4 0.00042 9.1E-09 65.1 25.4 164 139-302 231-409 (533)
115 cd00020 ARM Armadillo/beta-cat 98.4 2.6E-06 5.6E-11 67.4 9.7 108 396-503 6-119 (120)
116 KOG0168 Putative ubiquitin fus 98.4 0.00079 1.7E-08 67.4 28.1 185 166-350 171-366 (1051)
117 KOG1293 Proteins containing ar 98.4 0.0032 6.9E-08 61.6 31.0 454 13-466 13-534 (678)
118 cd00020 ARM Armadillo/beta-cat 98.4 3.8E-06 8.2E-11 66.5 9.7 107 163-269 7-119 (120)
119 KOG2274 Predicted importin 9 [ 98.3 0.0047 1E-07 62.6 38.9 469 48-527 5-626 (1005)
120 PF05918 API5: Apoptosis inhib 98.3 0.0022 4.8E-08 63.0 29.1 261 176-445 35-315 (556)
121 KOG4653 Uncharacterized conser 98.3 0.00022 4.7E-09 71.4 21.4 211 249-466 735-965 (982)
122 KOG2956 CLIP-associating prote 98.2 0.0002 4.4E-09 66.7 18.9 192 161-357 285-486 (516)
123 KOG2025 Chromosome condensatio 98.2 0.00031 6.7E-09 68.8 20.9 181 236-422 80-290 (892)
124 KOG2956 CLIP-associating prote 98.2 0.00052 1.1E-08 64.1 21.4 192 286-486 293-494 (516)
125 KOG4413 26S proteasome regulat 98.2 0.0017 3.8E-08 57.7 23.6 281 145-428 63-379 (524)
126 COG5218 YCG1 Chromosome conden 98.2 0.0012 2.6E-08 63.4 24.0 191 181-385 65-264 (885)
127 KOG0168 Putative ubiquitin fus 98.2 0.0032 7E-08 63.2 27.6 203 88-290 170-390 (1051)
128 PF05004 IFRD: Interferon-rela 98.2 0.00041 8.9E-09 64.1 20.0 182 166-347 46-256 (309)
129 PF05004 IFRD: Interferon-rela 98.1 0.0011 2.4E-08 61.3 21.3 198 329-526 53-285 (309)
130 KOG1949 Uncharacterized conser 98.1 0.015 3.3E-07 57.4 29.4 180 283-462 177-368 (1005)
131 KOG1967 DNA repair/transcripti 98.0 0.00015 3.2E-09 73.0 14.6 139 126-264 868-1018(1030)
132 PF13513 HEAT_EZ: HEAT-like re 98.0 1.3E-05 2.7E-10 52.9 4.8 53 411-463 1-55 (55)
133 PF13513 HEAT_EZ: HEAT-like re 98.0 1.2E-05 2.5E-10 53.1 4.1 52 177-228 1-54 (55)
134 KOG1949 Uncharacterized conser 97.9 0.0061 1.3E-07 60.0 23.3 145 202-346 174-329 (1005)
135 COG5116 RPN2 26S proteasome re 97.9 0.0012 2.6E-08 63.2 18.1 248 176-449 424-675 (926)
136 KOG1525 Sister chromatid cohes 97.9 0.0044 9.6E-08 66.9 24.4 146 240-387 258-405 (1266)
137 PF02985 HEAT: HEAT repeat; I 97.9 2.2E-05 4.8E-10 44.4 3.6 30 164-193 1-30 (31)
138 PLN03076 ARF guanine nucleotid 97.9 0.042 9E-07 62.3 31.4 292 179-471 1108-1495(1780)
139 PF12719 Cnd3: Nuclear condens 97.8 0.0046 1E-07 57.4 20.4 158 210-369 35-208 (298)
140 KOG1525 Sister chromatid cohes 97.8 0.076 1.6E-06 57.9 31.5 148 317-466 257-406 (1266)
141 PF02985 HEAT: HEAT repeat; I 97.8 4.2E-05 9.1E-10 43.2 4.1 30 437-466 1-30 (31)
142 KOG1517 Guanine nucleotide bin 97.8 0.002 4.4E-08 66.1 18.2 226 156-387 469-732 (1387)
143 PF13001 Ecm29: Proteasome sta 97.8 0.04 8.6E-07 55.2 27.2 211 211-424 246-486 (501)
144 PF14500 MMS19_N: Dos2-interac 97.8 0.016 3.4E-07 52.2 22.0 222 168-394 4-244 (262)
145 COG5116 RPN2 26S proteasome re 97.8 0.00048 1E-08 65.7 12.4 154 166-331 519-674 (926)
146 COG5218 YCG1 Chromosome conden 97.7 0.051 1.1E-06 52.7 31.6 166 11-189 93-263 (885)
147 KOG1822 Uncharacterized conser 97.7 0.027 5.7E-07 62.1 26.1 283 144-426 803-1127(2067)
148 KOG1851 Uncharacterized conser 97.7 0.12 2.6E-06 56.2 32.4 133 394-526 1523-1662(1710)
149 KOG0414 Chromosome condensatio 97.7 0.1 2.3E-06 55.0 37.6 178 340-526 898-1083(1251)
150 COG5098 Chromosome condensatio 97.7 0.07 1.5E-06 52.9 36.4 135 395-535 890-1029(1128)
151 PLN03076 ARF guanine nucleotid 97.7 0.071 1.5E-06 60.5 29.3 270 122-391 1134-1493(1780)
152 KOG1517 Guanine nucleotide bin 97.6 0.0025 5.5E-08 65.4 16.2 209 140-348 485-732 (1387)
153 PF14500 MMS19_N: Dos2-interac 97.6 0.041 8.9E-07 49.6 22.2 61 207-269 4-68 (262)
154 KOG1967 DNA repair/transcripti 97.6 0.11 2.5E-06 53.3 37.2 143 393-535 863-1016(1030)
155 COG5656 SXM1 Importin, protein 97.6 0.097 2.1E-06 52.4 34.2 138 392-529 403-557 (970)
156 PF01347 Vitellogenin_N: Lipop 97.6 0.0098 2.1E-07 62.0 20.9 216 254-499 377-617 (618)
157 PF01347 Vitellogenin_N: Lipop 97.6 0.0031 6.8E-08 65.6 16.9 242 261-533 345-612 (618)
158 KOG2021 Nuclear mRNA export fa 97.6 0.11 2.4E-06 52.0 43.2 490 8-530 2-592 (980)
159 PF12719 Cnd3: Nuclear condens 97.6 0.0097 2.1E-07 55.3 18.2 164 361-528 30-211 (298)
160 PF08506 Cse1: Cse1; InterPro 97.5 0.0098 2.1E-07 56.5 18.2 140 357-499 209-370 (370)
161 smart00638 LPD_N Lipoprotein N 97.5 0.019 4.1E-07 59.1 21.1 167 315-499 393-573 (574)
162 KOG1822 Uncharacterized conser 97.4 0.31 6.7E-06 54.3 30.7 231 39-269 867-1126(2067)
163 KOG2933 Uncharacterized conser 97.4 0.0033 7.2E-08 55.8 12.1 168 205-377 91-267 (334)
164 KOG1851 Uncharacterized conser 97.4 0.21 4.6E-06 54.5 27.0 156 316-472 1523-1685(1710)
165 smart00638 LPD_N Lipoprotein N 97.4 0.019 4E-07 59.2 19.1 161 357-533 392-568 (574)
166 COG5234 CIN1 Beta-tubulin fold 97.3 0.12 2.6E-06 51.4 22.3 143 10-155 247-417 (993)
167 KOG2933 Uncharacterized conser 97.2 0.013 2.9E-07 52.1 13.5 137 366-507 96-237 (334)
168 PF11864 DUF3384: Domain of un 97.2 0.29 6.2E-06 48.7 31.0 147 237-386 172-329 (464)
169 PF12530 DUF3730: Protein of u 97.1 0.066 1.4E-06 47.6 17.7 133 94-231 9-151 (234)
170 PF08506 Cse1: Cse1; InterPro 97.1 0.096 2.1E-06 49.9 18.9 125 294-421 225-370 (370)
171 KOG0392 SNF2 family DNA-depend 97.0 0.053 1.1E-06 57.4 17.7 225 242-468 78-328 (1549)
172 PF10363 DUF2435: Protein of u 97.0 0.013 2.8E-07 42.9 9.5 81 402-487 8-89 (92)
173 PF10363 DUF2435: Protein of u 96.9 0.01 2.2E-07 43.5 8.5 83 165-252 5-88 (92)
174 PF13251 DUF4042: Domain of un 96.8 0.017 3.6E-07 48.4 10.4 147 101-270 1-174 (182)
175 KOG0392 SNF2 family DNA-depend 96.8 0.073 1.6E-06 56.5 16.6 168 297-468 750-928 (1549)
176 PF12530 DUF3730: Protein of u 96.8 0.35 7.6E-06 43.0 21.4 192 171-371 9-216 (234)
177 PF13251 DUF4042: Domain of un 96.8 0.035 7.7E-07 46.5 11.9 129 89-234 43-177 (182)
178 PF11865 DUF3385: Domain of un 96.7 0.028 6.1E-07 46.4 11.0 75 392-466 81-158 (160)
179 PF12054 DUF3535: Domain of un 96.7 0.42 9E-06 46.9 20.3 94 100-193 101-209 (441)
180 PF12054 DUF3535: Domain of un 96.6 0.81 1.8E-05 44.9 21.8 77 216-292 101-180 (441)
181 cd00256 VATPase_H VATPase_H, r 96.5 0.84 1.8E-05 44.2 26.0 195 105-309 53-258 (429)
182 KOG2011 Sister chromatid cohes 96.4 0.7 1.5E-05 49.2 20.6 131 289-422 296-431 (1048)
183 KOG2160 Armadillo/beta-catenin 96.4 0.12 2.5E-06 47.5 13.4 169 141-309 99-282 (342)
184 cd00256 VATPase_H VATPase_H, r 96.2 1.3 2.8E-05 43.0 27.7 67 437-503 354-424 (429)
185 KOG2081 Nuclear transport regu 96.2 1.4 3E-05 43.2 34.2 428 44-509 59-541 (559)
186 COG5656 SXM1 Importin, protein 96.2 1.7 3.7E-05 44.1 32.4 357 144-501 389-798 (970)
187 PF11865 DUF3385: Domain of un 96.1 0.09 1.9E-06 43.4 10.6 144 356-504 8-157 (160)
188 PF12074 DUF3554: Domain of un 96.1 1.1 2.3E-05 42.7 19.2 67 164-231 23-90 (339)
189 KOG2011 Sister chromatid cohes 96.1 0.62 1.3E-05 49.6 18.3 230 101-344 170-431 (1048)
190 PF10274 ParcG: Parkin co-regu 96.0 0.24 5.2E-06 41.3 12.4 89 356-444 36-132 (183)
191 cd08050 TAF6 TATA Binding Prot 96.0 0.13 2.8E-06 48.6 12.4 140 162-308 177-339 (343)
192 PF11864 DUF3384: Domain of un 95.9 2.1 4.6E-05 42.7 31.7 143 281-430 177-335 (464)
193 PF10274 ParcG: Parkin co-regu 95.9 0.29 6.4E-06 40.8 12.4 116 396-511 37-171 (183)
194 PF14868 DUF4487: Domain of un 95.9 2.3 5E-05 42.8 22.5 89 418-507 462-555 (559)
195 PF14664 RICTOR_N: Rapamycin-i 95.8 1.8 3.9E-05 41.4 22.3 227 162-389 24-271 (371)
196 KOG2213 Apoptosis inhibitor 5/ 95.8 1.7 3.7E-05 40.5 18.6 53 256-310 39-91 (460)
197 KOG2160 Armadillo/beta-catenin 95.7 1.3 2.7E-05 41.0 16.8 172 98-270 95-282 (342)
198 KOG2081 Nuclear transport regu 95.7 2.4 5.3E-05 41.6 33.7 299 201-508 152-499 (559)
199 KOG2759 Vacuolar H+-ATPase V1 95.7 2 4.4E-05 40.5 27.7 154 105-269 65-228 (442)
200 PF05536 Neurochondrin: Neuroc 95.6 3.1 6.8E-05 42.2 30.4 175 176-353 70-266 (543)
201 PF04118 Dopey_N: Dopey, N-ter 95.5 0.64 1.4E-05 42.8 14.5 28 476-503 226-253 (307)
202 cd03568 VHS_STAM VHS domain fa 95.5 0.31 6.8E-06 39.3 11.1 98 406-509 13-115 (144)
203 PF12231 Rif1_N: Rap1-interact 95.5 2.6 5.6E-05 40.6 25.2 270 176-466 59-353 (372)
204 KOG0946 ER-Golgi vesicle-tethe 95.4 3.7 8E-05 42.1 32.3 69 165-233 124-197 (970)
205 KOG2022 Nuclear transport rece 95.4 4 8.8E-05 42.4 33.1 176 141-320 440-630 (982)
206 COG5098 Chromosome condensatio 95.4 3.5 7.6E-05 41.6 32.7 107 165-271 301-416 (1128)
207 PF03378 CAS_CSE1: CAS/CSE pro 95.4 3.1 6.6E-05 40.8 19.7 189 160-353 68-277 (435)
208 PF01603 B56: Protein phosphat 95.3 3.1 6.6E-05 40.7 22.5 252 250-505 99-371 (409)
209 PF08713 DNA_alkylation: DNA a 95.3 0.47 1E-05 41.6 12.9 131 126-270 52-184 (213)
210 KOG2021 Nuclear mRNA export fa 95.3 3.9 8.4E-05 41.8 38.7 319 138-484 206-585 (980)
211 PF10521 DUF2454: Protein of u 95.3 0.65 1.4E-05 42.7 13.9 35 280-314 119-153 (282)
212 KOG2549 Transcription initiati 95.2 0.58 1.3E-05 45.5 13.3 140 163-309 207-370 (576)
213 KOG0891 DNA-dependent protein 95.1 9.7 0.00021 45.3 29.3 246 15-269 487-762 (2341)
214 KOG0889 Histone acetyltransfer 95.1 11 0.00024 45.9 28.9 301 86-405 984-1327(3550)
215 PF03378 CAS_CSE1: CAS/CSE pro 95.1 3.6 7.9E-05 40.3 19.1 214 215-433 43-279 (435)
216 PF10521 DUF2454: Protein of u 95.1 0.38 8.2E-06 44.3 11.8 72 160-231 116-203 (282)
217 PF11701 UNC45-central: Myosin 95.1 0.18 3.8E-06 41.7 8.7 136 91-227 9-155 (157)
218 cd03569 VHS_Hrs_Vps27p VHS dom 95.1 0.59 1.3E-05 37.7 11.4 97 407-509 18-119 (142)
219 PF08167 RIX1: rRNA processing 95.1 1.3 2.9E-05 36.9 14.0 77 158-234 20-100 (165)
220 KOG0889 Histone acetyltransfer 95.1 11 0.00025 45.7 32.5 319 201-526 983-1371(3550)
221 PF12074 DUF3554: Domain of un 95.1 1.3 2.9E-05 42.1 15.9 48 476-524 205-254 (339)
222 KOG1048 Neural adherens juncti 95.1 2.5 5.3E-05 43.3 17.8 94 435-528 517-620 (717)
223 PF08713 DNA_alkylation: DNA a 95.1 2.2 4.8E-05 37.4 17.0 134 201-349 50-185 (213)
224 cd08050 TAF6 TATA Binding Prot 95.0 0.57 1.2E-05 44.3 13.0 132 365-503 185-339 (343)
225 KOG2973 Uncharacterized conser 95.0 2.7 5.9E-05 38.0 20.3 59 446-504 254-315 (353)
226 cd03567 VHS_GGA VHS domain fam 94.9 1 2.2E-05 36.1 12.1 97 406-508 14-120 (139)
227 PF03224 V-ATPase_H_N: V-ATPas 94.6 4 8.7E-05 38.3 17.7 161 364-524 111-293 (312)
228 PF08167 RIX1: rRNA processing 94.6 1.8 4E-05 36.0 13.6 113 396-510 24-149 (165)
229 cd03568 VHS_STAM VHS domain fa 94.5 1.3 2.8E-05 35.8 11.9 73 162-234 36-113 (144)
230 KOG1993 Nuclear transport rece 94.4 7 0.00015 40.3 30.1 211 48-258 488-716 (978)
231 KOG0803 Predicted E3 ubiquitin 94.4 7.9 0.00017 43.2 20.8 111 374-485 202-330 (1312)
232 KOG0803 Predicted E3 ubiquitin 94.2 8.4 0.00018 43.0 20.7 175 291-469 52-267 (1312)
233 KOG2022 Nuclear transport rece 94.2 8.5 0.00018 40.2 34.0 158 200-361 460-632 (982)
234 PF14664 RICTOR_N: Rapamycin-i 94.1 5.7 0.00012 38.1 21.0 214 97-310 36-270 (371)
235 PF00790 VHS: VHS domain; Int 94.0 2 4.3E-05 34.7 12.3 76 160-235 39-122 (140)
236 PF08389 Xpo1: Exportin 1-like 94.0 1.6 3.5E-05 35.5 12.1 48 450-499 100-148 (148)
237 KOG4524 Uncharacterized conser 94.0 9.8 0.00021 40.2 26.8 93 394-486 800-900 (1014)
238 KOG0891 DNA-dependent protein 94.0 18 0.00039 43.2 28.2 253 91-347 486-762 (2341)
239 KOG2213 Apoptosis inhibitor 5/ 93.8 5.9 0.00013 37.1 20.5 68 178-251 39-106 (460)
240 PF12830 Nipped-B_C: Sister ch 93.7 1.1 2.4E-05 38.3 10.9 71 161-233 6-76 (187)
241 KOG4500 Rho/Rac GTPase guanine 93.7 6.5 0.00014 37.4 33.3 353 57-412 52-460 (604)
242 PF07571 DUF1546: Protein of u 93.7 0.26 5.7E-06 36.2 6.0 69 447-519 17-89 (92)
243 COG5234 CIN1 Beta-tubulin fold 93.7 9.1 0.0002 38.9 25.8 216 46-270 244-491 (993)
244 PF14868 DUF4487: Domain of un 93.6 9.2 0.0002 38.7 22.1 100 65-168 246-349 (559)
245 KOG2005 26S proteasome regulat 93.6 1.4 3.1E-05 44.0 12.2 117 203-325 416-534 (878)
246 cd03561 VHS VHS domain family; 93.5 1.5 3.2E-05 35.0 10.6 97 407-509 14-117 (133)
247 smart00288 VHS Domain present 93.5 1.7 3.6E-05 34.7 10.9 96 407-508 14-115 (133)
248 PF07571 DUF1546: Protein of u 93.5 0.36 7.7E-06 35.5 6.4 58 174-231 17-78 (92)
249 KOG4500 Rho/Rac GTPase guanine 93.5 7.3 0.00016 37.1 28.5 104 357-460 314-426 (604)
250 PF08767 CRM1_C: CRM1 C termin 93.4 5.6 0.00012 37.4 15.9 136 334-469 42-198 (319)
251 PF00790 VHS: VHS domain; Int 93.4 1.6 3.5E-05 35.2 10.8 75 434-508 40-122 (140)
252 PF12765 Cohesin_HEAT: HEAT re 93.3 0.15 3.2E-06 31.0 3.5 27 434-460 16-42 (42)
253 PF04118 Dopey_N: Dopey, N-ter 93.3 6.7 0.00015 36.3 20.4 166 294-465 69-254 (307)
254 KOG2149 Uncharacterized conser 93.3 1.5 3.2E-05 41.2 11.4 109 168-276 63-176 (393)
255 PF11698 V-ATPase_H_C: V-ATPas 93.3 0.57 1.2E-05 35.9 7.3 68 163-230 43-114 (119)
256 PF08389 Xpo1: Exportin 1-like 93.2 2.7 5.8E-05 34.2 12.2 141 177-343 2-148 (148)
257 cd03569 VHS_Hrs_Vps27p VHS dom 93.0 4.1 8.9E-05 32.9 12.4 74 162-235 40-118 (142)
258 PF11698 V-ATPase_H_C: V-ATPas 92.8 0.83 1.8E-05 35.1 7.7 67 437-503 44-114 (119)
259 PF08161 NUC173: NUC173 domain 92.8 4.1 8.9E-05 35.0 12.7 72 246-317 5-78 (198)
260 smart00288 VHS Domain present 92.7 3.5 7.6E-05 32.9 11.6 73 162-234 36-114 (133)
261 KOG1993 Nuclear transport rece 92.7 14 0.0003 38.3 31.5 149 139-287 501-663 (978)
262 PF12231 Rif1_N: Rap1-interact 92.6 10 0.00022 36.6 31.7 233 99-350 59-305 (372)
263 PF11701 UNC45-central: Myosin 92.5 1.3 2.9E-05 36.5 9.2 128 174-305 16-155 (157)
264 cd03565 VHS_Tom1 VHS domain fa 92.4 2.9 6.2E-05 33.7 10.8 98 406-509 14-120 (141)
265 PF12830 Nipped-B_C: Sister ch 92.4 4.4 9.4E-05 34.6 12.5 71 396-468 7-77 (187)
266 COG5537 IRR1 Cohesin [Cell div 92.2 5.7 0.00012 39.5 14.1 140 166-309 278-422 (740)
267 cd03567 VHS_GGA VHS domain fam 92.1 5.2 0.00011 32.1 12.3 73 162-234 37-119 (139)
268 PF00514 Arm: Armadillo/beta-c 92.1 0.38 8.2E-06 29.0 4.2 29 163-191 12-40 (41)
269 KOG2149 Uncharacterized conser 92.1 5.8 0.00013 37.4 13.5 113 361-473 61-178 (393)
270 PF01603 B56: Protein phosphat 92.0 13 0.00028 36.4 18.3 202 329-532 100-315 (409)
271 PF00514 Arm: Armadillo/beta-c 91.8 0.44 9.5E-06 28.7 4.2 28 437-464 13-40 (41)
272 PF12765 Cohesin_HEAT: HEAT re 91.7 0.21 4.6E-06 30.3 2.7 23 280-302 18-40 (42)
273 KOG1848 Uncharacterized conser 91.7 25 0.00055 39.0 19.5 212 136-347 853-1131(1610)
274 PF08161 NUC173: NUC173 domain 91.6 4.6 9.9E-05 34.7 11.7 104 338-443 19-124 (198)
275 cd03561 VHS VHS domain family; 91.3 5.9 0.00013 31.6 11.4 74 162-235 36-116 (133)
276 cd03572 ENTH_epsin_related ENT 91.1 5.6 0.00012 30.9 10.5 37 159-195 34-70 (122)
277 KOG2549 Transcription initiati 91.1 12 0.00027 36.9 15.0 71 433-503 285-369 (576)
278 PF08064 UME: UME (NUC010) dom 91.0 5.5 0.00012 30.3 10.5 64 448-513 27-92 (107)
279 cd07064 AlkD_like_1 A new stru 90.9 10 0.00022 33.0 16.1 132 87-232 47-180 (208)
280 COG5537 IRR1 Cohesin [Cell div 90.7 14 0.0003 37.0 14.9 104 206-310 279-387 (740)
281 KOG0946 ER-Golgi vesicle-tethe 90.5 24 0.00052 36.7 36.8 65 11-75 24-91 (970)
282 cd00197 VHS_ENTH_ANTH VHS, ENT 90.5 4.9 0.00011 31.1 10.1 38 396-433 36-73 (115)
283 cd00197 VHS_ENTH_ANTH VHS, ENT 89.6 8 0.00017 29.8 11.1 38 160-197 34-71 (115)
284 PF08623 TIP120: TATA-binding 89.4 1.4 3E-05 36.5 6.4 61 174-235 38-98 (169)
285 PF08767 CRM1_C: CRM1 C termin 89.3 19 0.00042 33.8 18.4 154 373-526 42-226 (319)
286 PF08064 UME: UME (NUC010) dom 89.0 6.7 0.00014 29.8 9.5 61 175-237 27-89 (107)
287 PF08569 Mo25: Mo25-like; Int 88.8 21 0.00046 33.6 23.0 181 201-387 75-283 (335)
288 KOG2122 Beta-catenin-binding p 88.7 34 0.00073 38.5 17.1 68 281-348 531-601 (2195)
289 PF03224 V-ATPase_H_N: V-ATPas 88.5 22 0.00047 33.4 17.9 67 165-231 107-179 (312)
290 KOG2122 Beta-catenin-binding p 88.5 49 0.0011 37.4 20.5 211 254-466 364-602 (2195)
291 PF05536 Neurochondrin: Neuroc 88.3 32 0.0007 35.1 34.0 175 99-275 70-266 (543)
292 PF04078 Rcd1: Cell differenti 88.0 19 0.00042 32.1 14.4 70 123-192 93-168 (262)
293 KOG2973 Uncharacterized conser 87.9 21 0.00046 32.6 20.6 68 162-231 43-111 (353)
294 KOG1087 Cytosolic sorting prot 87.9 5.6 0.00012 39.0 10.3 98 405-508 13-116 (470)
295 COG5095 TAF6 Transcription ini 87.6 13 0.00028 33.6 11.4 130 367-503 207-358 (450)
296 cd06561 AlkD_like A new struct 87.5 17 0.00038 31.2 15.6 64 205-271 108-171 (197)
297 KOG1837 Uncharacterized conser 87.1 11 0.00024 42.1 12.7 133 103-235 1471-1615(1621)
298 COG5101 CRM1 Importin beta-rel 86.9 38 0.00082 34.3 32.5 157 119-275 475-653 (1053)
299 KOG2005 26S proteasome regulat 86.7 40 0.00086 34.4 19.9 251 161-430 450-708 (878)
300 PF12397 U3snoRNP10: U3 small 86.7 13 0.00029 28.9 11.8 70 396-467 5-76 (121)
301 KOG2153 Protein involved in th 86.6 39 0.00085 34.3 21.5 92 437-529 461-560 (704)
302 cd06561 AlkD_like A new struct 86.5 20 0.00043 30.8 17.5 89 252-349 83-171 (197)
303 PF08623 TIP120: TATA-binding 85.9 3.9 8.4E-05 33.9 7.0 55 411-466 41-95 (169)
304 COG5110 RPN1 26S proteasome re 85.9 39 0.00084 33.6 17.9 282 203-504 414-705 (881)
305 smart00567 EZ_HEAT E-Z type HE 85.5 1.1 2.3E-05 24.7 2.6 29 177-213 1-29 (30)
306 KOG1048 Neural adherens juncti 85.4 50 0.0011 34.4 20.9 330 10-347 234-640 (717)
307 smart00802 UME Domain in UVSB 85.3 11 0.00023 28.7 8.6 58 451-510 30-89 (107)
308 smart00567 EZ_HEAT E-Z type HE 85.0 0.91 2E-05 25.0 2.1 29 255-291 1-29 (30)
309 COG5369 Uncharacterized conser 84.9 28 0.0006 34.5 12.9 168 260-427 408-595 (743)
310 KOG2229 Protein required for a 84.8 42 0.00091 33.0 26.0 133 351-489 233-367 (616)
311 cd03572 ENTH_epsin_related ENT 84.8 17 0.00036 28.3 10.2 71 434-504 36-119 (122)
312 PF09324 DUF1981: Domain of un 84.2 13 0.00028 26.9 8.4 68 160-227 14-84 (86)
313 KOG2199 Signal transducing ada 84.0 15 0.00032 34.6 10.3 97 407-509 22-123 (462)
314 PF12726 SEN1_N: SEN1 N termin 83.0 71 0.0015 34.2 35.9 139 57-196 92-247 (727)
315 KOG1848 Uncharacterized conser 82.9 88 0.0019 35.2 23.4 108 359-466 998-1133(1610)
316 smart00802 UME Domain in UVSB 82.4 19 0.00042 27.3 8.9 70 166-237 14-89 (107)
317 PF14222 MOR2-PAG1_N: Cell mor 82.3 63 0.0014 33.1 29.3 52 429-483 464-515 (552)
318 KOG4524 Uncharacterized conser 81.8 79 0.0017 34.0 32.2 92 436-527 803-902 (1014)
319 COG5110 RPN1 26S proteasome re 81.1 62 0.0013 32.3 18.7 246 201-464 449-704 (881)
320 PF09324 DUF1981: Domain of un 81.1 15 0.00032 26.6 7.7 66 435-500 16-84 (86)
321 PF14225 MOR2-PAG1_C: Cell mor 80.9 43 0.00094 30.3 14.6 137 359-505 112-255 (262)
322 cd03565 VHS_Tom1 VHS domain fa 80.8 28 0.0006 28.1 12.4 73 163-235 38-119 (141)
323 PF12397 U3snoRNP10: U3 small 80.5 25 0.00054 27.4 11.7 72 199-272 3-76 (121)
324 PF03130 HEAT_PBS: PBS lyase H 80.4 1.2 2.7E-05 23.8 1.4 14 179-192 1-14 (27)
325 smart00185 ARM Armadillo/beta- 79.8 3.4 7.5E-05 24.4 3.6 28 164-191 13-40 (41)
326 smart00185 ARM Armadillo/beta- 78.0 4.1 9E-05 24.1 3.5 28 242-269 13-40 (41)
327 PF07539 DRIM: Down-regulated 77.7 14 0.00031 29.7 7.3 49 279-332 16-64 (141)
328 cd07064 AlkD_like_1 A new stru 77.7 47 0.001 28.9 17.9 158 172-349 21-180 (208)
329 COG5095 TAF6 Transcription ini 77.3 31 0.00066 31.3 9.7 97 171-274 206-320 (450)
330 KOG2038 CAATT-binding transcri 77.2 99 0.0021 32.4 26.1 125 239-367 302-428 (988)
331 COG5231 VMA13 Vacuolar H+-ATPa 76.9 59 0.0013 30.0 11.4 68 281-348 357-428 (432)
332 KOG1222 Kinesin associated pro 76.5 80 0.0017 31.0 29.8 298 160-466 342-664 (791)
333 KOG2229 Protein required for a 74.6 93 0.002 30.8 25.7 93 432-528 236-328 (616)
334 KOG1932 TATA binding protein a 74.3 1E+02 0.0022 33.8 14.0 52 290-349 653-706 (1180)
335 PF07539 DRIM: Down-regulated 74.1 27 0.00059 28.1 8.0 50 160-214 14-63 (141)
336 KOG1932 TATA binding protein a 74.0 92 0.002 34.1 13.6 70 212-289 653-724 (1180)
337 KOG1222 Kinesin associated pro 73.7 95 0.0021 30.5 24.1 116 218-333 279-400 (791)
338 PF14668 RICTOR_V: Rapamycin-i 72.8 14 0.00029 25.8 5.2 31 475-505 28-59 (73)
339 COG5369 Uncharacterized conser 72.4 16 0.00034 36.1 7.3 128 377-504 408-545 (743)
340 KOG2199 Signal transducing ada 72.4 90 0.0019 29.7 11.7 74 161-234 43-121 (462)
341 KOG2153 Protein involved in th 71.5 1.3E+02 0.0027 30.9 29.0 63 398-461 461-523 (704)
342 KOG3036 Protein involved in ce 71.2 75 0.0016 28.2 13.7 67 125-191 124-196 (293)
343 PF14222 MOR2-PAG1_N: Cell mor 69.5 1.4E+02 0.003 30.7 22.5 35 355-389 468-502 (552)
344 PF14225 MOR2-PAG1_C: Cell mor 67.6 97 0.0021 28.1 19.9 30 201-232 63-92 (262)
345 PF14668 RICTOR_V: Rapamycin-i 65.9 31 0.00068 24.0 5.9 51 377-427 6-59 (73)
346 KOG1087 Cytosolic sorting prot 64.8 1.3E+02 0.0028 29.9 11.9 73 163-235 38-116 (470)
347 PF14228 MOR2-PAG1_mid: Cell m 64.2 2.5E+02 0.0054 31.7 28.2 140 160-312 193-360 (1120)
348 PF06685 DUF1186: Protein of u 63.0 1.2E+02 0.0025 27.3 17.0 51 323-373 115-169 (249)
349 PF12031 DUF3518: Domain of un 62.7 7.7 0.00017 34.0 2.9 82 452-533 140-235 (257)
350 KOG1988 Uncharacterized conser 60.4 2.4E+02 0.0052 30.2 17.9 63 289-351 72-134 (970)
351 PF06371 Drf_GBD: Diaphanous G 60.3 60 0.0013 27.5 8.2 56 448-503 128-186 (187)
352 PF11935 DUF3453: Domain of un 58.8 1.4E+02 0.0029 26.8 18.1 49 435-485 113-163 (239)
353 PF11935 DUF3453: Domain of un 58.6 1.4E+02 0.003 26.8 17.7 51 396-448 113-165 (239)
354 KOG3961 Uncharacterized conser 57.9 41 0.00088 28.9 6.2 89 435-523 113-208 (262)
355 KOG4646 Uncharacterized conser 56.9 99 0.0021 24.6 8.7 100 248-347 24-127 (173)
356 PF11841 DUF3361: Domain of un 56.7 1.1E+02 0.0024 25.2 11.8 96 374-469 33-135 (160)
357 KOG3678 SARM protein (with ste 55.6 2.1E+02 0.0046 28.1 17.0 143 89-231 183-336 (832)
358 KOG3678 SARM protein (with ste 54.0 2.3E+02 0.0049 27.9 19.4 145 204-348 182-336 (832)
359 PF04388 Hamartin: Hamartin pr 53.5 2.9E+02 0.0064 29.2 13.1 89 160-250 67-161 (668)
360 COG5101 CRM1 Importin beta-rel 53.4 2.7E+02 0.0059 28.7 32.9 143 327-469 489-652 (1053)
361 PF08569 Mo25: Mo25-like; Int 52.3 2.1E+02 0.0046 27.1 29.7 104 363-466 169-284 (335)
362 KOG4199 Uncharacterized conser 52.1 2.1E+02 0.0045 26.9 24.4 145 360-504 285-444 (461)
363 PF06371 Drf_GBD: Diaphanous G 51.6 1.3E+02 0.0029 25.4 8.9 55 215-269 129-186 (187)
364 PF12612 TFCD_C: Tubulin foldi 51.6 97 0.0021 26.6 8.0 104 88-192 9-116 (193)
365 PF04388 Hamartin: Hamartin pr 51.5 3.1E+02 0.0068 29.1 12.9 148 10-172 5-161 (668)
366 PF12612 TFCD_C: Tubulin foldi 51.4 1.4E+02 0.0031 25.5 9.0 30 240-269 6-35 (193)
367 PF12783 Sec7_N: Guanine nucle 51.2 1.4E+02 0.0031 24.8 12.2 94 411-504 36-146 (168)
368 KOG3961 Uncharacterized conser 49.6 51 0.0011 28.4 5.5 69 280-348 114-184 (262)
369 PF14228 MOR2-PAG1_mid: Cell m 48.4 4.6E+02 0.0099 29.8 30.3 68 281-348 504-572 (1120)
370 COG4912 Predicted DNA alkylati 46.3 1.2E+02 0.0026 26.4 7.3 30 280-309 154-183 (222)
371 KOG3036 Protein involved in ce 43.1 2.5E+02 0.0053 25.2 12.3 67 164-230 125-196 (293)
372 KOG1988 Uncharacterized conser 41.7 4.8E+02 0.01 28.1 20.6 111 203-313 25-135 (970)
373 COG5330 Uncharacterized protei 40.7 1.2E+02 0.0026 28.8 7.0 61 130-190 12-74 (364)
374 COG5330 Uncharacterized protei 40.6 1.8E+02 0.004 27.6 8.2 66 398-463 8-74 (364)
375 PF06685 DUF1186: Protein of u 40.0 2.8E+02 0.0061 25.0 18.9 47 282-328 113-163 (249)
376 PF12333 Ipi1_N: Rix1 complex 38.9 1.6E+02 0.0034 22.2 6.4 52 163-214 11-65 (102)
377 PF04869 Uso1_p115_head: Uso1 37.0 3.6E+02 0.0078 25.3 10.5 60 408-467 167-233 (312)
378 PF05997 Nop52: Nucleolar prot 37.0 2.9E+02 0.0063 24.2 14.6 185 14-226 5-213 (217)
379 PF08620 RPAP1_C: RPAP1-like, 36.7 93 0.002 21.7 4.4 36 5-40 35-70 (73)
380 PF12333 Ipi1_N: Rix1 complex 36.0 1.3E+02 0.0027 22.7 5.5 37 200-236 9-45 (102)
381 KOG0890 Protein kinase of the 35.8 9.3E+02 0.02 29.7 23.7 199 218-426 896-1113(2382)
382 PF14911 MMS22L_C: S-phase gen 35.8 4.1E+02 0.0089 25.6 19.2 88 435-524 255-347 (373)
383 PF09758 FPL: Uncharacterised 35.0 2.5E+02 0.0054 22.9 7.3 102 434-535 24-141 (149)
384 KOG2753 Uncharacterized conser 34.7 3.9E+02 0.0085 25.1 15.7 166 162-346 46-214 (378)
385 KOG2759 Vacuolar H+-ATPase V1 34.2 4.5E+02 0.0098 25.6 27.3 68 319-386 366-437 (442)
386 PF09759 Atx10homo_assoc: Spin 34.1 1.4E+02 0.0029 22.5 5.2 30 438-467 30-61 (102)
387 cd05135 RasGAP_RASAL Ras GTPas 32.9 4.4E+02 0.0094 25.1 18.3 41 173-213 71-113 (333)
388 PF14961 BROMI: Broad-minded p 32.1 6.2E+02 0.014 28.7 11.4 67 129-195 166-234 (1296)
389 KOG4646 Uncharacterized conser 31.9 2.7E+02 0.0059 22.3 9.3 98 289-386 26-127 (173)
390 KOG0929 Guanine nucleotide exc 31.4 9.1E+02 0.02 28.3 15.9 146 56-206 1046-1220(1514)
391 PRK04330 hypothetical protein; 31.3 2.1E+02 0.0045 20.8 7.8 69 435-503 12-85 (88)
392 COG5231 VMA13 Vacuolar H+-ATPa 30.5 4.6E+02 0.0099 24.6 17.0 28 164-191 150-177 (432)
393 PF14663 RasGEF_N_2: Rapamycin 30.4 1.2E+02 0.0027 23.3 4.7 34 433-466 5-38 (115)
394 PF13764 E3_UbLigase_R4: E3 ub 30.4 5.2E+02 0.011 28.1 10.6 68 320-390 230-303 (802)
395 COG1698 Uncharacterized protei 29.4 2.2E+02 0.0048 20.6 8.6 67 357-423 16-87 (93)
396 KOG2374 Uncharacterized conser 28.7 6E+02 0.013 25.3 9.7 107 399-509 9-130 (661)
397 KOG2753 Uncharacterized conser 28.6 5E+02 0.011 24.4 13.5 116 399-515 106-226 (378)
398 COG2733 Predicted membrane pro 28.5 5.5E+02 0.012 24.8 23.1 27 324-350 306-332 (415)
399 PF14663 RasGEF_N_2: Rapamycin 28.3 1.3E+02 0.0027 23.3 4.5 33 355-387 5-37 (115)
400 KOG1926 Predicted regulator of 28.1 8.9E+02 0.019 27.2 27.8 88 435-526 418-513 (1129)
401 PF04078 Rcd1: Cell differenti 28.0 4.6E+02 0.0099 23.8 12.6 17 333-349 110-126 (262)
402 KOG1877 Putative transmembrane 27.7 8.1E+02 0.017 26.5 16.5 72 160-231 94-174 (819)
403 PF11707 Npa1: Ribosome 60S bi 26.7 5.5E+02 0.012 24.3 15.7 199 83-308 2-236 (330)
404 KOG0929 Guanine nucleotide exc 26.4 1.1E+03 0.024 27.7 17.6 215 171-390 1045-1301(1514)
405 PF08146 BP28CT: BP28CT (NUC21 25.6 3.8E+02 0.0081 22.0 8.0 35 101-135 36-70 (153)
406 PF12726 SEN1_N: SEN1 N termin 24.7 9E+02 0.02 26.1 30.3 112 124-235 119-247 (727)
407 COG4912 Predicted DNA alkylati 24.6 4.8E+02 0.01 22.9 10.0 68 396-467 117-185 (222)
408 KOG3687 Tuberin - Rap/ran-GTPa 24.5 1E+03 0.022 26.5 16.1 62 447-509 441-507 (1697)
409 PF13764 E3_UbLigase_R4: E3 ub 24.2 9.6E+02 0.021 26.2 12.9 60 214-276 241-306 (802)
410 PF08158 NUC130_3NT: NUC130/3N 21.9 1.7E+02 0.0038 18.7 3.4 29 240-268 18-46 (52)
411 KOG1877 Putative transmembrane 21.5 1.1E+03 0.023 25.7 16.1 92 219-310 73-175 (819)
412 PF01465 GRIP: GRIP domain; I 20.5 1.9E+02 0.004 18.0 3.3 31 202-232 7-37 (46)
413 KOG1566 Conserved protein Mo25 20.0 7.3E+02 0.016 23.3 14.4 187 347-534 68-277 (342)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-46 Score=366.90 Aligned_cols=527 Identities=56% Similarity=0.852 Sum_probs=495.3
Q ss_pred CCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCCccchh
Q 009359 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYAN 85 (536)
Q Consensus 6 ~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 85 (536)
+++|||..+++.++++|.+.|..+.+.+..++..+|.+.++..++||+.+..+++.+|+.+++..++.+....|++.+..
T Consensus 79 ~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~ 158 (759)
T KOG0211|consen 79 DSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAH 158 (759)
T ss_pred cccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHH
Confidence 37999999999999999999999999999999999999999999999999669999999999999999999999999999
Q ss_pred ccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCCh-HHHHHH
Q 009359 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE-ALKTEL 164 (536)
Q Consensus 86 ~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-~~~~~l 164 (536)
.+++.+..++.+++..||+++++.+..++...+++....++.|++..+..+++.+.|..++.+++..+...++ ..+.++
T Consensus 159 ~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el 238 (759)
T KOG0211|consen 159 MLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL 238 (759)
T ss_pred HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence 9999999999999999999999999999999998888889999999999998889999999999999999884 588999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch-hhhhhhH
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DCVAHIL 243 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~ 243 (536)
.+.+.++++|.+++||..+++-++.+++.++.+.....++|.+.++..|+.+.||..|++.+..+...+..+ +....+.
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~ 318 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLT 318 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhh
Confidence 999999999999999999999999999999988888999999999999999999999999999999998876 7788899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC----hHHHHHh
Q 009359 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQH 319 (536)
Q Consensus 244 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~~ 319 (536)
+.+.+..+|++|.+|..++..+..+...+|.+.......+.+..+++|..+++|.++..-...++.... .....+.
T Consensus 319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ 398 (759)
T KOG0211|consen 319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS 398 (759)
T ss_pred HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence 999999999999999999999999999999977777899999999999999999999999999998877 3445677
Q ss_pred hhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHH---hhHHHHhhhchhHHHh
Q 009359 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS---KLDQVNQVIGIDLLSQ 396 (536)
Q Consensus 320 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~---~l~~l~~~~~~~~~~~ 396 (536)
++|.+..+..|.+.+||.+.+..+..+.+.+|.+.....+.|.+...++|..+.||..... .+.......|.+...+
T Consensus 399 ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 399 ILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred hhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence 8899999999999999999999999999999988888999999999999999999999994 4455556677888889
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhch
Q 009359 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 476 (536)
Q Consensus 397 ~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i 476 (536)
..+|.+..+..|.+|++|.++++.+..++...|.+++.+.+.+.+...+.|.+..+|.+|+..+..++..+|.+|....+
T Consensus 479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~ 558 (759)
T KOG0211|consen 479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEE 558 (759)
T ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccchhhh
Q 009359 477 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSESVAVT 532 (536)
Q Consensus 477 ~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~ 532 (536)
+|.+..+..++++.+|.+.+.++..++..+|.+++.++++|.+..+.+|++++||=
T Consensus 559 i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~ 614 (759)
T KOG0211|consen 559 IPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRI 614 (759)
T ss_pred hHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhh
Confidence 99999999888999999999999999999999999999999999999999999984
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-34 Score=280.04 Aligned_cols=488 Identities=18% Similarity=0.244 Sum_probs=433.7
Q ss_pred hcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccc-cCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhc
Q 009359 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT 96 (536)
Q Consensus 18 l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~ 96 (536)
.......+|..++..+..++.....+.-+..+.|++..+ .++.-.-|..++..++........+.....+.+...++++
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~ 247 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQ 247 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhcc
Confidence 446667789999999999988777666678888888773 3334445666667777766665555677888899999999
Q ss_pred CcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCCh--HHHHHHHHHHHHhcCC
Q 009359 97 VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE--ALKTELRTIYRQLCQD 174 (536)
Q Consensus 97 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~~l~~ll~d 174 (536)
|.++.||..+..-++.++..++.+.....+.|....+..|+...+|..|...+..+.+.... +..+.+.+.+.+..+|
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d 327 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED 327 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC
Confidence 99999999999999999999988888888999999999999999999999888888776544 4778899999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccC----chhhhhhhHHHHHHhc
Q 009359 175 DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE----PQDCVAHILPVIVNFS 250 (536)
Q Consensus 175 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~~ 250 (536)
.+|.+|.........+...++++.......+.+...++|+.+++|.+...-...++.... .....+.++|.+..+.
T Consensus 328 ~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv 407 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV 407 (759)
T ss_pred hhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH
Confidence 999999999999999999999877778889999999999999999999999888888776 3444566789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhH---HHHHhhcChHHHHHhhhHHHHHh
Q 009359 251 QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV---TKICRILNPELAIQHILPCVKEL 327 (536)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l---~~~~~~~~~~~~~~~i~~~l~~l 327 (536)
.|.+..||.+.+.....+...+|.+...+.+.|.+...++|..++||......+ .......|.....+..+|.+..+
T Consensus 408 ~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el 487 (759)
T KOG0211|consen 408 LDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL 487 (759)
T ss_pred hcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence 999999999999999999999998888889999999999999999999988544 34444556677889999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhc
Q 009359 328 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407 (536)
Q Consensus 328 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 407 (536)
..|.+|++|.++.+.+..++.+.|..++.+.+.+.+..++.|.+..+|.+|+.++..++..+|.+|....++|.+..+..
T Consensus 488 ~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 488 AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDL 567 (759)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCC
Q 009359 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 487 (536)
Q Consensus 408 ~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~ 487 (536)
+++|..|.+.+.++..++..+|.+++.+.++|.+..+..|++++||..+++.+..+.+.+......+.+.|.+..+.+|+
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~ 647 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ 647 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999988878899999999999999
Q ss_pred ChHHHHHHHHHHHHHhhh
Q 009359 488 HYLYRMTILQAISLLAPV 505 (536)
Q Consensus 488 ~~~~r~~~~~~l~~l~~~ 505 (536)
+.++|..+..+++.+...
T Consensus 648 ~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 648 ELDVRYRAILAFGSIELS 665 (759)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 999999999999987654
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-30 Score=258.91 Aligned_cols=507 Identities=17% Similarity=0.227 Sum_probs=394.2
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc--ccCCchHHHHHHHHHHhchhcccC---Cccc
Q 009359 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVG---GLEY 83 (536)
Q Consensus 9 ~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~vr~~a~~~l~~l~~~~~---~~~~ 83 (536)
.++..|+.++.++|.++|.+|.+.+..+...- . ++|.+.. -...+|++|..++-.+.++....- ..+.
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~---~----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE---P----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc---c----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46889999999999999999999998775421 1 5677665 456789999999988887755311 0112
Q ss_pred hhccc-hHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH---
Q 009359 84 ANVLL-PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--- 159 (536)
Q Consensus 84 ~~~ll-~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--- 159 (536)
...|. .+|..+.+.+.+.||++-++.+..+++..-++ .|+.+++.+.+..+++++..|.+|..++..+....+..
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 22222 34566667889999999999999999988777 88999999999999999999999999999998877764
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--h--hhHHHHHHH----HHHhhcCcchHHHHHHHHhHHHhhc
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--A--HLKSEIMSI----FEELTQDDQDSVRLLAVEGCGALGK 231 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~--~~~~~l~~~----l~~~l~d~~~~vr~~a~~~l~~l~~ 231 (536)
+...+.+.+.+.+.|++..||..++++++.++...+. . .....++|. +...+++.+...-..+.+++..++.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 6778999999999999888999999999999998852 1 122345554 4445566677777888899988888
Q ss_pred ccCc--hhhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHhcCCCc---------
Q 009359 232 LLEP--QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-----EPTRSDVVPAYVRLLRDNE--------- 293 (536)
Q Consensus 232 ~~~~--~~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~ll~d~~--------- 293 (536)
..++ ......++.+.....+++ +..+|..+.+.+..+++..+. ..+...+++.++..+.|..
T Consensus 236 ~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 236 SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 7766 344566777777766664 678999999999988876321 1234567777777664211
Q ss_pred -------HHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHH--HHHHhHHHHHH
Q 009359 294 -------AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFL 364 (536)
Q Consensus 294 -------~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~ 364 (536)
..--..|.+++..++..+|.+.+...+++.+..++.+++|.-|.+++-+|+.+++..++. ...+.++++++
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 124677899999999999998888999999999999999999999999999998876542 24578999999
Q ss_pred HhhCCCCHHHHHHHHHhhHHHHhhhchh----------------------------------------------HHHhhH
Q 009359 365 SLLKDEFPDVRLNIISKLDQVNQVIGID----------------------------------------------LLSQSL 398 (536)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~----------------------------------------------~~~~~i 398 (536)
..++|+.+.||.+|+.++|++...++++ .+.+.+
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l 475 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGL 475 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 9999999999999999999997655331 112233
Q ss_pred HH-HHHHhhcCCChHHHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHhChhh
Q 009359 399 LP-AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKV----YSIRDAAANNVKRLAEEFGPDW 471 (536)
Q Consensus 399 ~~-~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~----~~Vr~~a~~~l~~l~~~~~~~~ 471 (536)
+. .+..+.++....+|..++.+|+.++...+..+ +.+.++|.+.+.+...+ ..+|....+|++.+....|.+.
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~ 555 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK 555 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh
Confidence 33 33445567788999999999999999888877 46889999999886443 5688899999999999999764
Q ss_pred hh---hchhHHHHhh---ccCCChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhc
Q 009359 472 AM---QHIVPQVLEM---INNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINAS 523 (536)
Q Consensus 472 ~~---~~i~~~l~~~---~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l 523 (536)
+. +.++..+... ..+.+...|.+.+.+++.+|+.+|++| |.+.++|.+++-.
T Consensus 556 F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 556 FLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTA 615 (1075)
T ss_pred hhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhh
Confidence 33 5666666665 445578899999999999999999987 7888888777644
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-27 Score=221.87 Aligned_cols=510 Identities=20% Similarity=0.203 Sum_probs=360.5
Q ss_pred CCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchH-----------------------
Q 009359 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE----------------------- 62 (536)
Q Consensus 6 ~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~----------------------- 62 (536)
.-+..+..+++.=.|+|+++|..+...+.++-. . |+ ..++++=.+.+..+.+..
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~-pd-fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~ 86 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-F-PD-FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSE 86 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-c-cc-hhceeeEEEecccccchhHHHHhhhhHhccccccccCCChH
Confidence 346678888888899999999999988887643 1 11 122222222223333333
Q ss_pred -------------------HHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChh---
Q 009359 63 -------------------VLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--- 120 (536)
Q Consensus 63 -------------------vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~--- 120 (536)
+|......+..++.. ++-..|+.++|.|-+++.+++....+.|+.+|.++++.....
T Consensus 87 ~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~-~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds 165 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGDASPLIRATVGIVITTIAST-GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS 165 (885)
T ss_pred HHHHHHHHHHhhccCchHHHHhhhhheeeeeecc-cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh
Confidence 333332222222221 234578999999999999998889999999999999976431
Q ss_pred ----hHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 009359 121 ----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT 193 (536)
Q Consensus 121 ----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 193 (536)
.-...++|.+.++.+++++..|.-|..++..+....+.. ..+.+++.+..+.+|++++||+..+.++..+.+.
T Consensus 166 ~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 166 DVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred hcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 123457888888999999999999999998887766664 5678888999999999999999999999999876
Q ss_pred Hhh--hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc----hhhhhhhHHHHHHh----------cC------
Q 009359 194 VEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNF----------SQ------ 251 (536)
Q Consensus 194 ~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~----------~~------ 251 (536)
.+. ..+...++.++.+..+|.+.+|-..|++.+.++++.--. ..+.+.++|.+.+. ++
T Consensus 246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence 544 234566888888889999999999999999998875322 23455666665431 11
Q ss_pred ------------------------------C----------CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 009359 252 ------------------------------D----------KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD 291 (536)
Q Consensus 252 ------------------------------d----------~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d 291 (536)
+ .+|+.|+..+.+|.-++..+|.+. .+.++|.+.+.+..
T Consensus 326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~ 404 (885)
T KOG2023|consen 326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSS 404 (885)
T ss_pred cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCc
Confidence 0 139999999999999999988765 57889999999999
Q ss_pred CcHHHHHHHHHhHHHHHhhcChH--HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC---HHHHHHhHHHHHHHh
Q 009359 292 NEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSL 366 (536)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~ 366 (536)
++|-||++++-++|.+++..-.- ...+.++|.+..++.|+.+-||...++++++.++-.- .+.+...++..+++.
T Consensus 405 ~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ 484 (885)
T KOG2023|consen 405 EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRR 484 (885)
T ss_pred chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHH
Confidence 99999999999999999865332 3357789999999999999999999999999876432 334445566666777
Q ss_pred hCCCCHHHHHHHHHhhHHHHhhhch---------------------------------------------hHHHhhHHHH
Q 009359 367 LKDEFPDVRLNIISKLDQVNQVIGI---------------------------------------------DLLSQSLLPA 401 (536)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~---------------------------------------------~~~~~~i~~~ 401 (536)
+-|.+..|+++|+.++..+-...|. ..+.+.++|.
T Consensus 485 llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPP 564 (885)
T KOG2023|consen 485 LLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPP 564 (885)
T ss_pred HhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccH
Confidence 7799999999999998887543221 1112333333
Q ss_pred HHH---hhcCCCh-------------------------HHH-------------------------------HHHHHHHH
Q 009359 402 IVE---LAEDRHW-------------------------RVR-------------------------------LAIIEYIP 422 (536)
Q Consensus 402 l~~---~~~~~~~-------------------------~~R-------------------------------~~a~~~l~ 422 (536)
+.+ .++|.+. .+= ..++..++
T Consensus 565 Li~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~S 644 (885)
T KOG2023|consen 565 LIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLS 644 (885)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHh
Confidence 322 1222111 000 02334444
Q ss_pred HHHhhhchhh----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhh--hhchhHHHHhhccCCChHHHHHHH
Q 009359 423 LLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTIL 496 (536)
Q Consensus 423 ~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~~r~~~~ 496 (536)
.+++.+|... ..+.++.+++.++.|+.++||+.+...+|.+.+.+..... .+.++|.+-.-++-.+..+-.+|+
T Consensus 645 GLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~ 724 (885)
T KOG2023|consen 645 GLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAI 724 (885)
T ss_pred HHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHH
Confidence 4444444321 2345788899999999999999999999999998643211 144555554334445678899999
Q ss_pred HHHHHHhhhhChHHHHHhHHHHHHh
Q 009359 497 QAISLLAPVMGSEITCSQLLPVVIN 521 (536)
Q Consensus 497 ~~l~~l~~~~~~~~~~~~~~~~l~~ 521 (536)
+++|.++..+|.+. .+++-|.+..
T Consensus 725 WAiGeia~k~g~~~-~~~v~~vl~~ 748 (885)
T KOG2023|consen 725 WAIGEIALKMGLKM-KQYVSPVLED 748 (885)
T ss_pred HHHHHHHHHhchhh-hhHHHHHHHH
Confidence 99999999999763 3444444433
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-25 Score=223.74 Aligned_cols=468 Identities=17% Similarity=0.220 Sum_probs=361.6
Q ss_pred HHHHh-cChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCc--cchhccch
Q 009359 14 LIDEL-KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGL--EYANVLLP 89 (536)
Q Consensus 14 l~~~l-~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~ 89 (536)
++..+ +-+.+.+|+.-.+.+..+++...++ .|+++++++.+ .++.++..|..+...|..+...+|.. .|...+.+
T Consensus 84 lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~ 162 (1075)
T KOG2171|consen 84 LLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLR 162 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHH
Confidence 34444 3566789999999999999999988 89999999998 88899999999999999888877753 36778899
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHHHhhcC-hhhHH---hhHHH----HHHHHhcCcccchhhHHHhhhhhhccCCChH--
Q 009359 90 PLETLCTVEETCVRDKAVESLCRIGSQMR-EQDVV---EHFIP----LVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-- 159 (536)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~---~~l~~----~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-- 159 (536)
+|.+-+.|++..||-.|+++++.++..++ +.... ..++| .+....++++...-..+..++..+....++-
T Consensus 163 lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~ 242 (1075)
T KOG2171|consen 163 LFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLR 242 (1075)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHH
Confidence 99998899888899999999999999885 22111 12344 2333444444445566777777777766653
Q ss_pred -HHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhcCc----------------c
Q 009359 160 -LKTELRTIYRQLCQDD--MPMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQDD----------------Q 215 (536)
Q Consensus 160 -~~~~l~~~l~~ll~d~--~~~vr~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~~l~d~----------------~ 215 (536)
+..+++.......++. +..+|..|++.+..+++..+. ..+.+.+++.+...+.|. .
T Consensus 243 ~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~ 322 (1075)
T KOG2171|consen 243 PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDE 322 (1075)
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccc
Confidence 5666777777776655 688999999999999987543 235667788777765321 1
Q ss_pred hHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc
Q 009359 216 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE 293 (536)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~ 293 (536)
......|..++..++-.+|++...+.+++.+...+.+.+|.-|.++..+|+.+++..++.. ..+++++..+..++|++
T Consensus 323 ~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph 402 (1075)
T KOG2171|consen 323 ETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH 402 (1075)
T ss_pred cCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Confidence 2246678899999999999988899999999999999999999999999999988766533 35689999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcChH---HHHHhhhHHHHHhccC-CCHHHHHHHHHHHHHhhhhhCHHHH---HHhHHH-HHHH
Q 009359 294 AEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGKDAT---IEQLLP-IFLS 365 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~---~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~-~l~~ 365 (536)
|.||.+|+.+++++...+.++ ...+.+.|.+...+.+ .+.+|...|+.++..+.....++.+ .+.++. .+..
T Consensus 403 prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~ 482 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLL 482 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988775 3446666777766655 4579999999998888776665543 344555 5555
Q ss_pred hhCCCCHHHHHHHHHhhHHHHhhhchh--HHHhhHHHHHHHhhcCCC----hHHHHHHHHHHHHHHhhhchhhHHH---H
Q 009359 366 LLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRH----WRVRLAIIEYIPLLASQLGVGFFDD---K 436 (536)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~~~~----~~~R~~a~~~l~~l~~~~~~~~~~~---~ 436 (536)
+++.+.+.||+.++.+++.+....+.. .+.+.++|.+..++...+ ...|...+++++.++..+|++.|.+ .
T Consensus 483 L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 483 LLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHH
Confidence 667888999999999999998877654 234788999998886543 5678888999999999999877754 4
Q ss_pred HHHHHHHH---hcCcchHHHHHHHHHHHHHHHHhChhhhh--hchhHHHHh
Q 009359 437 LGALCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLE 482 (536)
Q Consensus 437 l~~~l~~~---l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~ 482 (536)
++..+..+ ..|.+...|.-.+..++.+++.+|++|.+ ..++|.+..
T Consensus 563 liqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 563 LIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLK 613 (1075)
T ss_pred HHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHH
Confidence 55555555 44556678999999999999999998654 566666644
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.1e-25 Score=211.68 Aligned_cols=504 Identities=17% Similarity=0.186 Sum_probs=360.5
Q ss_pred HHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccchHHH
Q 009359 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLE 92 (536)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 92 (536)
|.+.|.+.|+....+..+.+-++ . ...++++-.++.. +....|.+...|+.+++.++...-+...|+.+++.+.
T Consensus 61 LKN~L~akd~~~k~~~~qRWl~l----~-~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv 135 (859)
T KOG1241|consen 61 LKNSLTAKDPERKQQYQQRWLQL----P-AEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLV 135 (859)
T ss_pred HhhhhccCCHHHHHHHHHHHHcC----C-HHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHH
Confidence 44556666665555555554333 2 2334555566555 6678999999999999999886666678888888887
Q ss_pred hhhcCcchH-HHHHHHHHHHHHHhhcChhhHHhhHH----HHHHHHhcC-cccchhhHHHhhhhhhccCCC-----hHHH
Q 009359 93 TLCTVEETC-VRDKAVESLCRIGSQMREQDVVEHFI----PLVKRLAAG-EWFTARVSSCGLFHVAYPSAP-----EALK 161 (536)
Q Consensus 93 ~l~~~~~~~-vr~~a~~~l~~~~~~~~~~~~~~~l~----~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~-----~~~~ 161 (536)
....++++. +|+.++++++.+|.++.++...+..- ..+..+.+. ++..+|.+|..++....+... +..+
T Consensus 136 ~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~er 215 (859)
T KOG1241|consen 136 SNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMER 215 (859)
T ss_pred HhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhh
Confidence 777766655 99999999999999999876554433 333344433 367899999988877654332 2366
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhh-HHHHHHHHHHhhcCcchHHHHHHHHhHHHhhccc-----
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHL-KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL----- 233 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----- 233 (536)
..++....+..+.++.+||.+|..+|..+...... +.+ .+.++++-...+++++++|...+++.++++++-=
T Consensus 216 n~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~ 295 (859)
T KOG1241|consen 216 NYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAI 295 (859)
T ss_pred ceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888999999999999999999998865443 222 3346676667777888888888888888776420
Q ss_pred --Cc--h------------hhhhhhHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 009359 234 --EP--Q------------DCVAHILPVIVNFSQ-------DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR 290 (536)
Q Consensus 234 --~~--~------------~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~ 290 (536)
++ + .-...++|.+.+++. +++|..-.++..+|.-++...|++. .++++|++.+.++
T Consensus 296 e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fiee~i~ 374 (859)
T KOG1241|consen 296 EYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFIEENIQ 374 (859)
T ss_pred HHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHHHHhcC
Confidence 10 0 011246666666542 3578888888888888888877766 4578888888888
Q ss_pred CCcHHHHHHHHHhHHHHHhhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH----HHHHHhHHHHH
Q 009359 291 DNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIF 363 (536)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l 363 (536)
.++|.-|.+|+-+++.+...-.+. .+....+|.+..+..|++-.||..+.++++.+++.+.. +......++.+
T Consensus 375 ~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l 454 (859)
T KOG1241|consen 375 NPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSAL 454 (859)
T ss_pred CcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHH
Confidence 888888888888888887643332 23455667777777788888888888888887665431 11112222222
Q ss_pred HHhhC---------------------------------------------------C-CCHHHHHHHHHhhHHHHhhhch
Q 009359 364 LSLLK---------------------------------------------------D-EFPDVRLNIISKLDQVNQVIGI 391 (536)
Q Consensus 364 ~~~l~---------------------------------------------------d-~~~~vr~~a~~~l~~l~~~~~~ 391 (536)
...++ | .....|.+|..+|..+++....
T Consensus 455 ~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 455 LEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 22221 2 3357888888888888754321
Q ss_pred --------------------------------------------------------hHHHhhHHHHHHHhhcC-CChHHH
Q 009359 392 --------------------------------------------------------DLLSQSLLPAIVELAED-RHWRVR 414 (536)
Q Consensus 392 --------------------------------------------------------~~~~~~i~~~l~~~~~~-~~~~~R 414 (536)
....+.++..+.++++. ++--+.
T Consensus 535 ~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~ 614 (859)
T KOG1241|consen 535 DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVH 614 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccch
Confidence 12234566666666666 345577
Q ss_pred HHHHHHHHHHHhhhchhh--HHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHhChhhhh--hchhHHHHhhccCC--
Q 009359 415 LAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEMINNP-- 487 (536)
Q Consensus 415 ~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~-- 487 (536)
..++.+++.++..+|+.| +.+.+.|.+...| +-.+..|-.+|+..+|.++..++..+.. +.++..|.+.++++
T Consensus 615 e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~ 694 (859)
T KOG1241|consen 615 EEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNL 694 (859)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccc
Confidence 889999999999999887 3578999999988 5567789999999999999999887544 78888899988887
Q ss_pred ChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhc
Q 009359 488 HYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINAS 523 (536)
Q Consensus 488 ~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l 523 (536)
+..++..++.++|.|+-.+|.+| +.+.++|.+....
T Consensus 695 hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 695 HRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67899999999999999999987 6788888887765
No 7
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.7e-24 Score=203.14 Aligned_cols=519 Identities=18% Similarity=0.246 Sum_probs=368.5
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc--ccCCch-HHHHHHHHHHhchhcccCCccchh
Q 009359 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDD-EVLLAMAEELGVFIPYVGGLEYAN 85 (536)
Q Consensus 9 ~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~ 85 (536)
..|..++-.++|+.+..|..|++.|..-+..+|++...+.++|.+++ +.|..- -+-..+.+.|.++-... ..|.+
T Consensus 363 r~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlv--rpYVh 440 (1172)
T KOG0213|consen 363 RKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV--RPYVH 440 (1172)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccc--hhcee
Confidence 45778899999999999999999999999999999999999999988 334332 22334444554443322 22444
Q ss_pred ccchHHHhhhcCc-----------------------------------chHHHHHHHHHHHHHHhhcChhhHHhhHHHHH
Q 009359 86 VLLPPLETLCTVE-----------------------------------ETCVRDKAVESLCRIGSQMREQDVVEHFIPLV 130 (536)
Q Consensus 86 ~ll~~l~~l~~~~-----------------------------------~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 130 (536)
.|+-.+..++-|+ ++.||.-...+++.+++++. .+.++|++
T Consensus 441 kILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalg----ip~llpfL 516 (1172)
T KOG0213|consen 441 KILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALG----IPALLPFL 516 (1172)
T ss_pred eeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC----cHHHHHHH
Confidence 4444333333333 45555555555555555543 23578999
Q ss_pred HHHhcCc-ccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh---hh----
Q 009359 131 KRLAAGE-WFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HL---- 199 (536)
Q Consensus 131 ~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~---- 199 (536)
+..+.+. +|+.|..+..+...++...+.. +...++..+.+++.|.+..||..++.++..+++..++- .+
T Consensus 517 kavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVl 596 (1172)
T KOG0213|consen 517 KAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVL 596 (1172)
T ss_pred HHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 9999887 8999999998888887766664 66778888899999999999999999999999876541 11
Q ss_pred -------------------------------------HHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc--hhhhh
Q 009359 200 -------------------------------------KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVA 240 (536)
Q Consensus 200 -------------------------------------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~ 240 (536)
..+++-++..-.+.++++.++..++.+...+..-|- +....
T Consensus 597 kpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~ 676 (1172)
T KOG0213|consen 597 KPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRF 676 (1172)
T ss_pred HHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhh
Confidence 111222222334556677777777777666654332 22222
Q ss_pred hhHHHHH---------------------------------------HhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc--
Q 009359 241 HILPVIV---------------------------------------NFSQDKSWRVRYMVANQLYELCEAVGPEPTRS-- 279 (536)
Q Consensus 241 ~l~~~l~---------------------------------------~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~-- 279 (536)
.++|.+. .-+.|.++..|..++.+...+...+|...+.+
T Consensus 677 dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl 756 (1172)
T KOG0213|consen 677 DILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL 756 (1172)
T ss_pred hhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH
Confidence 3333322 22345666677777777777776666544333
Q ss_pred --chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh--HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhh---CH
Q 009359 280 --DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL---GK 352 (536)
Q Consensus 280 --~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---~~ 352 (536)
.++.-++-.+.....+.- ..+..++.++..++. +.+.+.|...+...++++++.||..++..++.++..+ +.
T Consensus 757 eE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~e 835 (1172)
T KOG0213|consen 757 EERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGE 835 (1172)
T ss_pred HHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH
Confidence 233333333332222221 345666777666665 4556777778888889999999999999999987654 55
Q ss_pred HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHH---hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh-
Q 009359 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL- 428 (536)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~- 428 (536)
+....++--++...+..+.++|-...+.++..+.+.+|...+. ..++|.|..++++....+....+..++.|+...
T Consensus 836 e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 836 EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 6667788888999999999999999999999999988765542 578899999999999999999999999998643
Q ss_pred ---chhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh-------------------------------h
Q 009359 429 ---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-------------------------------Q 474 (536)
Q Consensus 429 ---~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-------------------------------~ 474 (536)
+...+...-. -++.+|......+|.+|..++|-+++.+|+.... =
T Consensus 916 E~v~aREWMRIcf-eLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF 994 (1172)
T KOG0213|consen 916 EYVSAREWMRICF-ELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF 994 (1172)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch
Confidence 2232222111 2556677788899999999999999999885310 1
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhhhChH--HHHHhHHHHHHhhcCCccchhhhccC
Q 009359 475 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDSESVAVTYSH 535 (536)
Q Consensus 475 ~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~vr~~a~ 535 (536)
.++|.|++-++.|+..|+..++.++..+.+..|+- .+.-.+.|.+...+.|.++.=|+.|.
T Consensus 995 tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~ 1057 (1172)
T KOG0213|consen 995 TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAM 1057 (1172)
T ss_pred hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHH
Confidence 57899999899999999999999999999998853 35667899999999999998888764
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.3e-25 Score=207.09 Aligned_cols=480 Identities=17% Similarity=0.122 Sum_probs=349.0
Q ss_pred HhhhhccccccccccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcC---h
Q 009359 43 ERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMR---E 119 (536)
Q Consensus 43 ~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~---~ 119 (536)
++...++..++.+..++++++|+.+-..+.++-. .+++..++.-+|... .+.+...|..|.-.|.+-++... +
T Consensus 9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~---~pdfnnYL~~IL~~~-~~~d~~~Rs~aGLlLKNnvr~~~~~~~ 84 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL---FPDFNNYLIYILIRA-KSEDVPTRSLAGLLLKNNVRGHYNSIP 84 (885)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc---ccchhceeeEEEecc-cccchhHHHHhhhhHhccccccccCCC
Confidence 3445667778888899999999999998887744 344555555555554 34456678888888877554321 2
Q ss_pred hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---
Q 009359 120 QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--- 196 (536)
Q Consensus 120 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--- 196 (536)
.+...++-.-+.+-..|.++-+|...-.++..+...-+-..+++++|.+.+++..++....+.|..+|..+++....
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 33444455555555566677888888878888777776678899999999999999999999999999999875432
Q ss_pred ----hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch--hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009359 197 ----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (536)
Q Consensus 197 ----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~ 270 (536)
..-.+.++|.+.++.+++++.+|..|+.++..+.-.-+.. ...+..+..+..+.+|.++.||+.+|.+|.-+.+
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 1335678999999999999999999999999887654442 2245677777788899999999999999999988
Q ss_pred HhCCCcc--ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH----HHHHhhhHHHHHhc----------c-----
Q 009359 271 AVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELS----------S----- 329 (536)
Q Consensus 271 ~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~i~~~l~~l~----------~----- 329 (536)
....... ...++..++....|.+.+|...|++.+..+++.--.+ .+.+.++|.+..-+ +
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence 7655432 3357888888889999999999999998887642111 22345555543211 1
Q ss_pred -------------------------------C----------CCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC
Q 009359 330 -------------------------------D----------SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 368 (536)
Q Consensus 330 -------------------------------d----------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (536)
| .+|..|+..+.+++.++..+|.+ ..+.++|.+...|.
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLS 403 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcC
Confidence 0 12899999999999999988865 46788999999999
Q ss_pred CCCHHHHHHHHHhhHHHHhhhch--hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHH---HHHHHH
Q 009359 369 DEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQ 443 (536)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l---~~~l~~ 443 (536)
.+.|.+|++++-++|.+....-. ......++|.+..++.|+...+|...++.+++.++..-.+...+.+ +.-+++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 99999999999999999765422 2234678999999999999999999999999988866433322333 334556
Q ss_pred HhcCcchHHHHHHHHHHHHHHHHhChhhhh--hchhHHHHhh---ccCCChHHHHHHHHHHHHHhhhhCh----HHHHHh
Q 009359 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEM---INNPHYLYRMTILQAISLLAPVMGS----EITCSQ 514 (536)
Q Consensus 444 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~---~~d~~~~~r~~~~~~l~~l~~~~~~----~~~~~~ 514 (536)
.+-|++..|+++|+.++..+-+.-|.+... +.++..+... ++.+|.. ....|+|+++..+|. ..+.+-
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl---ILYDAIgtlAdsvg~~Ln~~~Yiqi 560 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL---ILYDAIGTLADSVGHALNKPAYIQI 560 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccee---hHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 667999999999999999998887665322 3344444332 2233433 345667777766664 335666
Q ss_pred HHHHHHh---hcCCccchh
Q 009359 515 LLPVVIN---ASKDSESVA 530 (536)
Q Consensus 515 ~~~~l~~---~l~d~~~~v 530 (536)
++|.|.+ .++|.++++
T Consensus 561 LmPPLi~KW~~lsd~DKdL 579 (885)
T KOG2023|consen 561 LMPPLIEKWELLSDSDKDL 579 (885)
T ss_pred hccHHHHHHHhcCcccchH
Confidence 7776664 677776653
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.6e-21 Score=183.26 Aligned_cols=513 Identities=16% Similarity=0.167 Sum_probs=360.8
Q ss_pred HHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCch-HHHHHHHHHHhchhcccCCccc---hhcc
Q 009359 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-EVLLAMAEELGVFIPYVGGLEY---ANVL 87 (536)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~-~vr~~a~~~l~~l~~~~~~~~~---~~~l 87 (536)
.++..|+++.|+.+..|.+.++.+|..--|...|+++++.+.. ..+..+ .++....+++|.++..+.+... ...+
T Consensus 94 ~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~i 173 (859)
T KOG1241|consen 94 NILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDI 173 (859)
T ss_pred HHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHH
Confidence 3457788999999999999999999888888889999988876 445444 4899999999999987764321 2222
Q ss_pred ch-HHHhhh-cCcchHHHHHHHHHHHHHHhhc----ChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhc----cCCC
Q 009359 88 LP-PLETLC-TVEETCVRDKAVESLCRIGSQM----REQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAY----PSAP 157 (536)
Q Consensus 88 l~-~l~~l~-~~~~~~vr~~a~~~l~~~~~~~----~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~----~~~~ 157 (536)
+. ++.... ..++..||-.|..+|.+-.... ..+.-..+++...-..++.++..+|.+|..|+..+. +.+.
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222222 3457789999998888765533 345556678888888888888888998888887763 3344
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH-h--------------h------hhhHHHHHHHHHHhhc----
Q 009359 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV-E--------------A------AHLKSEIMSIFEELTQ---- 212 (536)
Q Consensus 158 ~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~-~--------------~------~~~~~~l~~~l~~~l~---- 212 (536)
....+.++..-.....+++.+|...+.+.+..+++.- + | ....+.++|.+.+++.
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 4455557777777788888999999999999877531 1 0 0123478888888774
Q ss_pred ---CcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHH
Q 009359 213 ---DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYV 286 (536)
Q Consensus 213 ---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~ 286 (536)
|++|..-.+|-.||.-+++.++++ +++.++|++.+.+++++|+-|.+++.++|.+...-.... ...+.+|.++
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 245788888888888888877764 678999999999999999999999999998876433322 2346788888
Q ss_pred HhcCCCcHHHHHHHHHhHHHHHhhcChH----------------------------------------------------
Q 009359 287 RLLRDNEAEVRIAAAGKVTKICRILNPE---------------------------------------------------- 314 (536)
Q Consensus 287 ~ll~d~~~~vr~~a~~~l~~~~~~~~~~---------------------------------------------------- 314 (536)
.++.|+.-.||..+..+++.+++.+...
T Consensus 413 ~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 413 NLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred HHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 8889999999999999999888765310
Q ss_pred -HHHHhhhHHHHHhcc--C-CCHHHHHHHHHHHHHhhhhhCHHH------------------------------------
Q 009359 315 -LAIQHILPCVKELSS--D-SSQHVRSALATVIMGMAPILGKDA------------------------------------ 354 (536)
Q Consensus 315 -~~~~~i~~~l~~l~~--d-~~~~vr~~a~~~l~~l~~~~~~~~------------------------------------ 354 (536)
.+.+.|+..|..... | .....|.++.++|+.+.+....+.
T Consensus 493 t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ 572 (859)
T KOG1241|consen 493 TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQ 572 (859)
T ss_pred chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 011222222222211 1 335688888888887765433221
Q ss_pred --------------------HHHhHHHHHHHhhCC-CCHHHHHHHHHhhHHHHhhhchh--HHHhhHHHHHHHhh-cCCC
Q 009359 355 --------------------TIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA-EDRH 410 (536)
Q Consensus 355 --------------------~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~-~~~~ 410 (536)
..+.++..+++.++. .+..+.+.|+.+++.+...+|.. .+.+.+.|.+..-+ +-.+
T Consensus 573 s~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e 652 (859)
T KOG1241|consen 573 SLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE 652 (859)
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH
Confidence 112344455555554 33345566666677777666654 45577888888877 5567
Q ss_pred hHHHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHhChhhhh--hchhHHHHhhc
Q 009359 411 WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEMI 484 (536)
Q Consensus 411 ~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~ 484 (536)
+.+-.+++..++.++..++.++ +.+.++..+.+.|+++. .+|+-..+.++|.++-.+|..|.. +.++|.+.+..
T Consensus 653 ~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 653 YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8899999999999999999877 46888899999998775 468899999999999999987654 66777766543
Q ss_pred ---cCC------C--hHHHHHHHHHHHHHhhhhCh---HH----HHHhHHHHHHhhcCCc
Q 009359 485 ---NNP------H--YLYRMTILQAISLLAPVMGS---EI----TCSQLLPVVINASKDS 526 (536)
Q Consensus 485 ---~d~------~--~~~r~~~~~~l~~l~~~~~~---~~----~~~~~~~~l~~~l~d~ 526 (536)
.|+ + ..+|..++++...+.+.++. .. +.++++..+.+...|+
T Consensus 733 ~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~ 792 (859)
T KOG1241|consen 733 SVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEP 792 (859)
T ss_pred hccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCc
Confidence 233 1 25899999999999888873 11 3445555555544444
No 10
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.91 E-value=8.1e-21 Score=179.91 Aligned_cols=476 Identities=16% Similarity=0.151 Sum_probs=346.3
Q ss_pred HHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCC-chHHHHHHHHHHhchhcccCCc--cchhccchHH
Q 009359 16 DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGL--EYANVLLPPL 91 (536)
Q Consensus 16 ~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l 91 (536)
.-+.|.|+=+|..-.++++.++.++| .++++||+.. +.+. +.+-|+...++..+++-..|.. .|...++.++
T Consensus 483 pDidn~deYVRnttarafavvasalg----ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii 558 (1172)
T KOG0213|consen 483 PDIDNKDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKII 558 (1172)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 34557888899999999999999998 4678999987 6665 6788888888888888776643 3667777888
Q ss_pred HhhhcCcchHHHHHHHHHHHHHHhhcCh---hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHH----HHHH
Q 009359 92 ETLCTVEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEAL----KTEL 164 (536)
Q Consensus 92 ~~l~~~~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~----~~~l 164 (536)
...+.|++..||..+.-++..+++...+ +.+...+.|+-+...++.. ..=.+-..+++.+++.+.+++ -.++
T Consensus 559 ~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrev 637 (1172)
T KOG0213|consen 559 EHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREV 637 (1172)
T ss_pred HHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHH
Confidence 8899999999999999999999988766 4444555666655544321 111233456666777776652 3455
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhhHHH---------------------------------------H
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSE---------------------------------------I 203 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~---------------------------------------l 203 (536)
+-.+..-.+.+|.+.++..++.+..++...|- .....+ +
T Consensus 638 mlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~ 717 (1172)
T KOG0213|consen 638 MLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPI 717 (1172)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHH
Confidence 56666667788888888888888877765442 111122 2
Q ss_pred HHHHHHhhcCcchHHHHHHHHhHHHhhcccCch--------------------------------------------hhh
Q 009359 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--------------------------------------------DCV 239 (536)
Q Consensus 204 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------~~~ 239 (536)
+..+..-+.|+.+..|...+++...+...+|.. .+.
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpyl 797 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYL 797 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccch
Confidence 222333356777888888888887776655431 111
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHH
Q 009359 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA 316 (536)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (536)
+.+...+...++++++.||..++..++.++..+. ++....++--++.+.+....|+|--..+.|+..+...+|-...
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 2233344556778888999998888888876553 3333445666777888888889988888888888887754321
Q ss_pred ---HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhh----CHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhh
Q 009359 317 ---IQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (536)
Q Consensus 317 ---~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (536)
...++|.+...+.+.+..|....+..++.++..- +..++. .+.=.++.+|+..+.++|.+|..++|.+.+.+
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM-RIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM-RICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 3567788888888999999999999999998642 222222 23334566778888999999999999999999
Q ss_pred chhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh
Q 009359 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 390 ~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
|+. .++..|.+-++..+.+.|...--+++.+++..|+- .++|.+++-..-++.+|+...+++++.+.+..|.
T Consensus 957 GPq----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Feyige 1028 (1172)
T KOG0213|consen 957 GPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGE 1028 (1172)
T ss_pred CHH----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHH
Confidence 984 55666666667677777777777888888888874 3678888888889999999999999999999886
Q ss_pred h--hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009359 470 D--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 470 ~--~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
- .....+.|.|.+.+.|.|...|+.+..++.+++-.
T Consensus 1029 mskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1029 MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 3 23366888888899999999999999999998654
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.91 E-value=4.1e-21 Score=194.81 Aligned_cols=499 Identities=17% Similarity=0.182 Sum_probs=363.3
Q ss_pred HHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccchH
Q 009359 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPP 90 (536)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 90 (536)
..+++..+ .+...|..+++.+-.+ ...|.+- ..+.+.+.. +.+++...++.+.-.+..+... .++......+.
T Consensus 10 ~~~~~~~~-~~~~~~~~~l~kli~~-~~~G~~~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l~~n~ 83 (526)
T PF01602_consen 10 AKILNSFK-IDISKKKEALKKLIYL-MMLGYDI--SFLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLILIINS 83 (526)
T ss_dssp HHHHHCSS-THHHHHHHHHHHHHHH-HHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHH-HHcCCCC--chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHHHHHH
Confidence 33344433 3888899898877665 3345432 244444444 5678888988888777777552 22333334455
Q ss_pred HHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHH
Q 009359 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQ 170 (536)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (536)
+..-+.++++.+|..|+.+++.+.. ++..+.+.+.+.++..|+++.+|..|+.++..++...++.....+.+.+..
T Consensus 84 l~kdl~~~n~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~ 159 (526)
T PF01602_consen 84 LQKDLNSPNPYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQ 159 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHH
T ss_pred HHHhhcCCCHHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Confidence 6666788999999999999999873 456667888889999999999999999999998876443322227899999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHH
Q 009359 171 LCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248 (536)
Q Consensus 171 ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 248 (536)
++.|+++.|+.+|+.++..+ +.-+.. ...+.+.+.+.+.+.+.++..+...++.+..++..-........+++.+..
T Consensus 160 lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~ 238 (526)
T PF01602_consen 160 LLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLN 238 (526)
T ss_dssp HTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHH
Confidence 99999999999999999998 222222 445667777777778899999998888888776543332111568888888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhc
Q 009359 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 328 (536)
Q Consensus 249 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~ 328 (536)
.+++.++.|+..+++++..+... ......+++.+.+++.++++.+|..++.++..++... ++.+ ......+..+.
T Consensus 239 ~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v-~~~~~~~~~l~ 313 (526)
T PF01602_consen 239 LLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV-FNQSLILFFLL 313 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH-GTHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh-hhhhhhhheec
Confidence 88888899999998888755422 1134568899999999999999999999999998765 2222 12222233445
Q ss_pred cCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCC-CHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhc
Q 009359 329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407 (536)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 407 (536)
.+++..+|..+++.+..++..-+ ...+++.+...+.+. +.++|..++..++.++..+... .+..++.+.+++.
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~~n----~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANESN----VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLE 387 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHhhcccccc----hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhh
Confidence 58889999999999999876432 345677777777544 7789999999999999877542 2567788888888
Q ss_pred CCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccC
Q 009359 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 486 (536)
Q Consensus 408 ~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d 486 (536)
..+..+...++..+..+...... .....+..+.+.+.+ ..+.++..+++.+|+.+...+.......++..+.+.+.+
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~~~--~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~ 465 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNNPE--LREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIE 465 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHSTT--THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHhhcChh--hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcc
Confidence 87777888888888877654332 234456666777665 567899999999999998876511345677777777788
Q ss_pred CChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcC--Cccchhhhcc
Q 009359 487 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK--DSESVAVTYS 534 (536)
Q Consensus 487 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~--d~~~~vr~~a 534 (536)
.+..+|..++.++.++....+.....+.+.+.+..+.+ +.++.||+=|
T Consensus 466 ~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra 515 (526)
T PF01602_consen 466 ESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRA 515 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 88899999999999999888765567789999999999 8899998754
No 12
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.91 E-value=5.2e-21 Score=177.72 Aligned_cols=507 Identities=16% Similarity=0.172 Sum_probs=338.7
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc--ccCCch-HHHHHHHHHHhchhcccCCccchh
Q 009359 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDD-EVLLAMAEELGVFIPYVGGLEYAN 85 (536)
Q Consensus 9 ~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~ 85 (536)
..+-.++-.++++++..|..+++.|..-+..+|++...+.++|.+++ +.|..- -+-....+.|..+-... ..|.+
T Consensus 168 r~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~--~pyvh 245 (975)
T COG5181 168 RDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLK--VPYVH 245 (975)
T ss_pred HhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccc--cccee
Confidence 45677889999999999999999999999999999999999999987 444332 23334444444432211 12222
Q ss_pred ccchHHHhh-----------------------------------hcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHH
Q 009359 86 VLLPPLETL-----------------------------------CTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLV 130 (536)
Q Consensus 86 ~ll~~l~~l-----------------------------------~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 130 (536)
.|+-....+ ..+.++.||.....+.+.+++++.- +.++|++
T Consensus 246 kILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl 321 (975)
T COG5181 246 KILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFL 321 (975)
T ss_pred eEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHH
Confidence 222211111 1345677888888888887776653 4578999
Q ss_pred HHHhcCc-ccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh---hh----
Q 009359 131 KRLAAGE-WFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HL---- 199 (536)
Q Consensus 131 ~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~---- 199 (536)
..++.+. +|..|..+..+...++..++.. +...++.-+.+++.|.+..||..++.++..+++..++- .+
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl 401 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVL 401 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHH
Confidence 9999886 8899999998888887776664 56677888889999999999999999999988765520 00
Q ss_pred ------------------------------------------------------------------------------H-
Q 009359 200 ------------------------------------------------------------------------------K- 200 (536)
Q Consensus 200 ------------------------------------------------------------------------------~- 200 (536)
.
T Consensus 402 ~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~ 481 (975)
T COG5181 402 CPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRD 481 (975)
T ss_pred HHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHH
Confidence 0
Q ss_pred --------------------------------------HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-------
Q 009359 201 --------------------------------------SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------- 235 (536)
Q Consensus 201 --------------------------------------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------- 235 (536)
..+...+.+.++|+.+-.|..++.+...+...+|.
T Consensus 482 ~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErl 561 (975)
T COG5181 482 QVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERL 561 (975)
T ss_pred hhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHH
Confidence 01111122222333333444444433333322221
Q ss_pred -------------------------------------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCC
Q 009359 236 -------------------------------------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPE 275 (536)
Q Consensus 236 -------------------------------------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~ 275 (536)
+.+...++..+.++++++.+.||..++...+.++..+ |+.
T Consensus 562 eerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~ 641 (975)
T COG5181 562 EERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET 641 (975)
T ss_pred HHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH
Confidence 0011224444455666667777777666666665443 333
Q ss_pred ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHH---HHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhh--
Q 009359 276 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-- 350 (536)
Q Consensus 276 ~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-- 350 (536)
....++-.++.+.+....|+|--..++|+..+....+... =...++|.+...+.+++..|....+..++.++..-
T Consensus 642 ~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe 721 (975)
T COG5181 642 KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE 721 (975)
T ss_pred HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc
Confidence 3333455556666666667776666666666655443221 12566777777778888888888888888887532
Q ss_pred --CHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh
Q 009359 351 --GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (536)
Q Consensus 351 --~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~ 428 (536)
|..++. .+.=.++..|+..+.++|.+|..++|.+.+.+|+ +.++..+..-++..+.+.|....-+++.+++..
T Consensus 722 yi~~rEWM-RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP----qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c 796 (975)
T COG5181 722 YIGVREWM-RICFELVDSLKSWNKEIRRNATETFGCISRAIGP----QDVLDILLNNLKVQERQQRVCTSVAISIVAEYC 796 (975)
T ss_pred cCCHHHHH-HHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH----HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc
Confidence 333332 2333456677888999999999999999999998 456666666777777778888888888888888
Q ss_pred chhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhh--hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhh
Q 009359 429 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 506 (536)
Q Consensus 429 ~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~ 506 (536)
|+- .++|.++.-..-++.+|+...+++++.+.+..|... ....+.|.|.+.++|.|...|+.+...+.+++-..
T Consensus 797 gpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 797 GPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred Cch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 874 367778887888899999999999999999988652 23678888899999999999999999999986554
Q ss_pred C---hHHHHHhHHHHHHhhcCCccchh
Q 009359 507 G---SEITCSQLLPVVINASKDSESVA 530 (536)
Q Consensus 507 ~---~~~~~~~~~~~l~~~l~d~~~~v 530 (536)
+ .+...=|++..+-.=+-++.|-|
T Consensus 873 ~gtg~eda~IHLlNllwpNIle~sPhv 899 (975)
T COG5181 873 PGTGDEDAAIHLLNLLWPNILEPSPHV 899 (975)
T ss_pred CCcccHHHHHHHHHHhhhhccCCCcHH
Confidence 3 33333344444444444454443
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=3e-19 Score=192.64 Aligned_cols=513 Identities=13% Similarity=0.112 Sum_probs=353.8
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChH---hhhhcccccccc-ccC-CchHHHHHHHHHHhchhcccCCccch
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE---RTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGLEYA 84 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~-~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~ 84 (536)
-++.++..++++++..+..|...|..++...+.. -...-.+|.+.. +.+ +++.+|..|+.+|++++.. .+++.
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~--s~e~r 267 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ--SKEAK 267 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC--CHHHH
Confidence 4678889999999999999998887776543211 112344666666 433 4568999999999998762 22222
Q ss_pred h-----ccchHHHhhhcCcc---------hHHHHHHHHHHHHHHhhcCh-----------h-hHH---h-----------
Q 009359 85 N-----VLLPPLETLCTVEE---------TCVRDKAVESLCRIGSQMRE-----------Q-DVV---E----------- 124 (536)
Q Consensus 85 ~-----~ll~~l~~l~~~~~---------~~vr~~a~~~l~~~~~~~~~-----------~-~~~---~----------- 124 (536)
. --+|.|..++..++ ...++.|+.+|++++....+ . ... .
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 2 22344444444332 44688999999998874321 0 000 0
Q ss_pred --------------hHHHHHHHHhcCcccc-hhhHHHhhhhhhccCCCh-H--HHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009359 125 --------------HFIPLVKRLAAGEWFT-ARVSSCGLFHVAYPSAPE-A--LKTELRTIYRQLCQDDMPMVRRSAATN 186 (536)
Q Consensus 125 --------------~l~~~l~~l~~~~~~~-~r~~a~~~l~~~~~~~~~-~--~~~~l~~~l~~ll~d~~~~vr~~a~~~ 186 (536)
.+.+.+.+++.++++. +...+..++..++.+..- . ...+..+.+..++...+.++|..++.+
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~a 427 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRA 427 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHH
Confidence 0111222222222211 122222332222222100 0 112234556667777778999999999
Q ss_pred HHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHH
Q 009359 187 LGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYM 260 (536)
Q Consensus 187 l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~ 260 (536)
|..+++.-.. .......+|.+.+++.+.+..++..|+..++.++..-.+ .......+|.+.+++++++..+|..
T Consensus 428 L~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqee 507 (2102)
T PLN03200 428 LSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKED 507 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 9998854221 112233689999999999999999999999998764332 1223568999999999999999999
Q ss_pred HHHHHHHHHHHhCCC---cc-ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHH
Q 009359 261 VANQLYELCEAVGPE---PT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVR 336 (536)
Q Consensus 261 ~~~~l~~l~~~~~~~---~~-~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr 336 (536)
+++++++++.. ..+ .. ....+|.+++++++.+++++..|+.++..+...-..+ .++.+..++..++..++
T Consensus 508 AawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLlsdd~~~~ 581 (2102)
T PLN03200 508 SATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLGDLPESK 581 (2102)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcCCChhHH
Confidence 99999999852 111 11 2367899999999999999999999999997753333 22556667777888888
Q ss_pred HHHHHHHHHhhhhhCHHHH------HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch---hHHHhhHHHHHHHhhc
Q 009359 337 SALATVIMGMAPILGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAE 407 (536)
Q Consensus 337 ~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~ 407 (536)
..+++.++.+......+.. ....+|.+..++++++..+++.|+.++..++..-.. .......+|.+..++.
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs 661 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT 661 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh
Confidence 9899999888664443321 135789999999999999999999999999763221 1234567888999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhchhh----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh--hhhhchhHHHH
Q 009359 408 DRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVL 481 (536)
Q Consensus 408 ~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~ 481 (536)
+.+..+|..+++++..+........ .....+|.+.+++.+++..++..|+.+|..+...-... ......++.|.
T Consensus 662 s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv 741 (2102)
T PLN03200 662 NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLT 741 (2102)
T ss_pred cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHH
Confidence 9999999999999999986433221 22446888999999999999999999999999864322 23467899999
Q ss_pred hhccCCChHHHHHHHHHHHHHhhhhChHH-H-----HHhHHHHHHhhcCCccchh
Q 009359 482 EMINNPHYLYRMTILQAISLLAPVMGSEI-T-----CSQLLPVVINASKDSESVA 530 (536)
Q Consensus 482 ~~~~d~~~~~r~~~~~~l~~l~~~~~~~~-~-----~~~~~~~l~~~l~d~~~~v 530 (536)
+++++.+...|.+|.+++..++...+.+. + ..-.+..|..+++-.+..+
T Consensus 742 ~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~ 796 (2102)
T PLN03200 742 RVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDS 796 (2102)
T ss_pred HHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcch
Confidence 99999999999999999999998887544 2 2234566666666555543
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.89 E-value=5.2e-20 Score=186.77 Aligned_cols=473 Identities=18% Similarity=0.147 Sum_probs=346.6
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccc-ccccCCchHHHHHHHHHHhchhcccCCccchhccc
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFL-SENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 88 (536)
-+...+..+.++|...|+-+--.+..+.. ..++.. ......+ .++.++++.+|..|.++++++. .++..+.+.
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~-~~~~~~-~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~ 116 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLH-EDPELL-ILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLI 116 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTT-TSHHHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhh-cchhHH-HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHH
Confidence 35566777788998887766655555432 222211 2223333 3488999999999999999984 466778888
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCCh---HHHHHHH
Q 009359 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE---ALKTELR 165 (536)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~l~ 165 (536)
+.+..++.|+++.||+.|+.++.++....++ .....+.+.+..+..|+++.++..|+.++..+ ...++ .....+.
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~ 194 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLI 194 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence 8899999999999999999999999987543 22222688888888888999999999999888 22222 2456667
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHH
Q 009359 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV 245 (536)
Q Consensus 166 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 245 (536)
..+..++.++++..+..+++.+..++...........+++.+...+++.++.|...++.++..+... ......+++.
T Consensus 195 ~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~ 271 (526)
T PF01602_consen 195 RILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINP 271 (526)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHH
T ss_pred HHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHH
Confidence 7777777999999999999999887653222221156888888888899999999999988866542 2256778899
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHH
Q 009359 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK 325 (536)
Q Consensus 246 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~ 325 (536)
+..++.++++.+|..++..+..++....... ......+..+..|++..+|..++..+..++.. .. ...+++.+.
T Consensus 272 L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v--~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~---~n-~~~Il~eL~ 345 (526)
T PF01602_consen 272 LIKLLSSSDPNVRYIALDSLSQLAQSNPPAV--FNQSLILFFLLYDDDPSIRKKALDLLYKLANE---SN-VKEILDELL 345 (526)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH--GTHHHHHHHHHCSSSHHHHHHHHHHHHHH--H---HH-HHHHHHHHH
T ss_pred HHHHhhcccchhehhHHHHHHHhhcccchhh--hhhhhhhheecCCCChhHHHHHHHHHhhcccc---cc-hhhHHHHHH
Confidence 9999999999999999999998876531111 12223334444588899999999999888763 22 244556665
Q ss_pred HhccC-CCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHH
Q 009359 326 ELSSD-SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404 (536)
Q Consensus 326 ~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 404 (536)
..+.+ .+..+|..++..++.++..+... .+..++.+..++......+...+...+..+..... ...+.++..+.+
T Consensus 346 ~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~--~~~~~~l~~L~~ 421 (526)
T PF01602_consen 346 KYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP--ELREKILKKLIE 421 (526)
T ss_dssp HHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST--TTHHHHHHHHHH
T ss_pred HHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh--hhhHHHHHHHHH
Confidence 55633 47789999999999999877432 34567888888888777778888888877765432 223556777777
Q ss_pred hhcC-CChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhh
Q 009359 405 LAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483 (536)
Q Consensus 405 ~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 483 (536)
.+.+ ....++..+++.+|..+...........++..+.+...+....||..++.++.++....+.....+.+.+.+.++
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~ 501 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSL 501 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCH
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHH
Confidence 7776 457899999999999988777511456677778888888889999999999999998876544456888888888
Q ss_pred cc--CCChHHHHHHHHHHHHHh
Q 009359 484 IN--NPHYLYRMTILQAISLLA 503 (536)
Q Consensus 484 ~~--d~~~~~r~~~~~~l~~l~ 503 (536)
.+ +.+.++|..|.+.+.-+-
T Consensus 502 ~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 502 ATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHS-SSHHHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHc
Confidence 88 889999999998877553
No 15
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.9e-19 Score=169.68 Aligned_cols=508 Identities=16% Similarity=0.158 Sum_probs=364.9
Q ss_pred cChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCC-chHHHHHHHHHHhchhcccCC-ccchhccchHHHhhh
Q 009359 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGG-LEYANVLLPPLETLC 95 (536)
Q Consensus 19 ~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~ 95 (536)
.++.+.+|..-+++....-...|.+. ...+.|...+ +.+. +..+|.......+.++....+ +.....+...+..-.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~-v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQN-VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHH-HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc
Confidence 45556677666665554444444333 3556666665 3332 445666665555665554332 223344444555555
Q ss_pred cCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH--HHHHHHHHHHHhcC
Q 009359 96 TVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--LKTELRTIYRQLCQ 173 (536)
Q Consensus 96 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~~~~l~~~l~~ll~ 173 (536)
.-+.+.+|+....++..+........ ...+.+.+.++........|..+...+..+....+.+ ....++..+....+
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~ 184 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAII 184 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhc
Confidence 67889999999999988777654332 2345666666666666677887777777776665554 45668888888888
Q ss_pred CCChHH-HHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhc
Q 009359 174 DDMPMV-RRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS 250 (536)
Q Consensus 174 d~~~~v-r~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~ 250 (536)
|....- |+.+..++......+|+ +.+.-.++|.+.....|....||..|..+...+...++... +..++|.+...+
T Consensus 185 dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-VK~llpsll~~l 263 (569)
T KOG1242|consen 185 DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-VKLLLPSLLGSL 263 (569)
T ss_pred ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-hhHhhhhhHHHH
Confidence 876554 44677888888888876 45666788888888899999999999999999998887754 344555555544
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhc
Q 009359 251 QDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 328 (536)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~ 328 (536)
.+..|+.+.++++.++.++...+.. ...+.++|.+.+.+.|..++||.++..++..++..+.+..+ ..++|.+.+.+
T Consensus 264 ~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l 342 (569)
T KOG1242|consen 264 LEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDAL 342 (569)
T ss_pred HHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHh
Confidence 4458999999999999888765543 23568999999999999999999999999999999988775 67789999989
Q ss_pred cCCCHHHHHHHHHHHHH--hhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH----HHhhHHHHH
Q 009359 329 SDSSQHVRSALATVIMG--MAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAI 402 (536)
Q Consensus 329 ~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l 402 (536)
.|++.++... +..++. +...+. .....-++|++.+.+++.+...+..++..++.++.....+. +.+.++|-+
T Consensus 343 ~dp~~~~~e~-~~~L~~ttFV~~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~l 420 (569)
T KOG1242|consen 343 ADPSCYTPEC-LDSLGATTFVAEVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGL 420 (569)
T ss_pred cCcccchHHH-HHhhcceeeeeeec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHH
Confidence 9988655333 333322 111111 13356789999999999999999999999999998884432 345667777
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchH-HHHHHHHHHHHHHHHhChhhhhhchhHHHH
Q 009359 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHIVPQVL 481 (536)
Q Consensus 403 ~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~-Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 481 (536)
...+.|..+.+|..+.++++.+.+..|...+ +...|.+...+.+.... -|..++..++.....+|.+. ...++|.+.
T Consensus 421 k~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~-~~~~~~~~~ 498 (569)
T KOG1242|consen 421 KENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEK-VEDILPEIL 498 (569)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchH-HHHHHHHHH
Confidence 7778888999999999999999999998776 77888888888766555 47778899999988887653 356777765
Q ss_pred hhcc--CCChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCCccchhhhcc
Q 009359 482 EMIN--NPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 482 ~~~~--d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
.... ..++.+|...++.+.-+-..++..+ +...+++.+.+-+.|.++.++..+
T Consensus 499 a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~ 555 (569)
T KOG1242|consen 499 ANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTA 555 (569)
T ss_pred HHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccch
Confidence 5433 3466788888887776655555433 566678888888889988887654
No 16
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.88 E-value=4.7e-18 Score=157.08 Aligned_cols=507 Identities=13% Similarity=0.120 Sum_probs=346.7
Q ss_pred HHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCch-HHHHHHHHHHhchhcccCCccch---hccc
Q 009359 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-EVLLAMAEELGVFIPYVGGLEYA---NVLL 88 (536)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~-~vr~~a~~~l~~l~~~~~~~~~~---~~ll 88 (536)
.+..|+|+.|+.-.+|...++.++..--|...++.++.-+.. .-++.| .+.+.....+++.+....+.... ..++
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il 178 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVIL 178 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHH
Confidence 457788999999999999999988776677777776666554 444443 56677777888887765532211 1111
Q ss_pred -hHHH-hhhcCcchHHHHHHHHHHHHHHhhc----ChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhh----ccCCCh
Q 009359 89 -PPLE-TLCTVEETCVRDKAVESLCRIGSQM----REQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA----YPSAPE 158 (536)
Q Consensus 89 -~~l~-~l~~~~~~~vr~~a~~~l~~~~~~~----~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~----~~~~~~ 158 (536)
.+.. .+-+.++..||-.++.+|..-+... ..+.-..+++...-...+.++..+..++..|+..+ ++.+..
T Consensus 179 ~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ 258 (858)
T COG5215 179 FAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQS 258 (858)
T ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1224567789999988887743332 33445566778777788888777888887777665 333443
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHh-h------------------hhhHHHHHHHHHHhhcC------
Q 009359 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE-A------------------AHLKSEIMSIFEELTQD------ 213 (536)
Q Consensus 159 ~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~-~------------------~~~~~~l~~~l~~~l~d------ 213 (536)
...+-+.......+++++.+|...|.+.+..++..-- . .....+++|.+.+++..
T Consensus 259 ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~ 338 (858)
T COG5215 259 YMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYY 338 (858)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3444555666677889999999999999988875311 0 01135588888888743
Q ss_pred -cchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhc
Q 009359 214 -DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLL 289 (536)
Q Consensus 214 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ll 289 (536)
++|.+-.+|..||.-+++..++. +...++.++.+.+.+++|.-|.+++.++|.+...-... .+.++.+|.+....
T Consensus 339 ~DdWn~smaA~sCLqlfaq~~gd~-i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m 417 (858)
T COG5215 339 GDDWNPSMAASSCLQLFAQLKGDK-IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM 417 (858)
T ss_pred ccccchhhhHHHHHHHHHHHhhhH-hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc
Confidence 46888999999999998887764 45558889999999999999999999999987543222 23457889999999
Q ss_pred CCCcHHHHHHHHHhHHHHHhhcCh----H-----------------------------------------------HHHH
Q 009359 290 RDNEAEVRIAAAGKVTKICRILNP----E-----------------------------------------------LAIQ 318 (536)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~~~----~-----------------------------------------------~~~~ 318 (536)
.|+.-.|+..++.+++.++.++.. . .+..
T Consensus 418 ~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ 497 (858)
T COG5215 418 SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYL 497 (858)
T ss_pred ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHH
Confidence 999999999999999988875420 0 0111
Q ss_pred hhhHHHHHhc--cCCCHHHHHHHHHHHHHhhhhhCHHH------HHHhHHH-------HHHHhhC--CC--CHHHHHHHH
Q 009359 319 HILPCVKELS--SDSSQHVRSALATVIMGMAPILGKDA------TIEQLLP-------IFLSLLK--DE--FPDVRLNII 379 (536)
Q Consensus 319 ~i~~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~-------~l~~~l~--d~--~~~vr~~a~ 379 (536)
.++..+.... .+.+...|.++..+++.+....+... +....+. ..-+.+. |. ..++....+
T Consensus 498 ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~ 577 (858)
T COG5215 498 AILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYI 577 (858)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 1222221111 13445667777777777655433210 1111111 1111111 11 235555666
Q ss_pred HhhHHHHhhhch--hHHHhhHHHHHHHhhcCCC-hHHHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHhcCcchHHHH
Q 009359 380 SKLDQVNQVIGI--DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRD 454 (536)
Q Consensus 380 ~~l~~l~~~~~~--~~~~~~i~~~l~~~~~~~~-~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~ 454 (536)
..+..++...+. +...+.++..+.+++++.+ .-+-.....+++.++..++..| +.+.+.|.+.+.++..+..|-.
T Consensus 578 ~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~ 657 (858)
T COG5215 578 GVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLN 657 (858)
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHH
Confidence 666666666665 4555678888888888764 4456678888888888887765 4688999999999999999999
Q ss_pred HHHHHHHHHHHHhChhhhh--hchhHHHHhhccCC--ChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHh
Q 009359 455 AAANNVKRLAEEFGPDWAM--QHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVIN 521 (536)
Q Consensus 455 ~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~--~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~ 521 (536)
.|+..+|.++..+|..+.. +.++..|.++++.+ +.+++..++.+++.++..+|..| +.+.++-.+..
T Consensus 658 ~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qq 730 (858)
T COG5215 658 SAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQ 730 (858)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999987544 77888899988876 67899999999999999999876 44444444433
No 17
>PRK09687 putative lyase; Provisional
Probab=99.87 E-value=3.4e-20 Score=167.20 Aligned_cols=252 Identities=19% Similarity=0.188 Sum_probs=164.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHH
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (536)
.+.|..++.|++..||..++.+|+.+.. +.+++.+..+++|+++.+|..++.+|+.++..-. .....++
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHHH
Confidence 3456677788888888888888877653 4566777777888888888888888888764111 0234666
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHH
Q 009359 245 VIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (536)
Q Consensus 245 ~l~~~-~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~ 323 (536)
.+..+ .+|+++.||..++.+||.++.. .......+++.+...+.|+++.||..++.+|+.+.. +..++.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~--~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~ 163 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKK--NPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIPL 163 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccc--ccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHHH
Confidence 66655 6777888888888888776421 111123455666666777777777777777765532 334466
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHH
Q 009359 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (536)
Q Consensus 324 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 403 (536)
|..+++|+++.||..++.+|+.+.. + .+...+.+...++|+++.||..|+..|+.+.. ...+|.|.
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li 229 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLI 229 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHH
Confidence 6666677777777777777777621 1 13455667777777777777777777776543 45666676
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc-CcchHHHHHHHHHHH
Q 009359 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVK 461 (536)
Q Consensus 404 ~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~Vr~~a~~~l~ 461 (536)
+.+++++ +|..++.+++.+.. +..+|.+.+++. +++..|+..+.+++.
T Consensus 230 ~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 230 KELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 7776655 34556666655431 235666666664 666677777766654
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=1.6e-18 Score=187.07 Aligned_cols=511 Identities=14% Similarity=0.133 Sum_probs=357.5
Q ss_pred HHHHHHHhcChh---------HHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCC-chHHHHHHHHHHhchhcccC
Q 009359 11 IAVLIDELKNDD---------IQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVG 79 (536)
Q Consensus 11 i~~l~~~l~s~~---------~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~a~~~l~~l~~~~~ 79 (536)
|..|++.+.+++ ...+.+|+++|+.++... ..++|++.+ +.+. +..+...++.++..+.....
T Consensus 276 Ip~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d 349 (2102)
T PLN03200 276 IPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGALAYALMVFD 349 (2102)
T ss_pred HHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcC
Confidence 555666665544 234778888888886532 457788776 3332 23333344455555544333
Q ss_pred Ccc-ch-----hccchHHHhhhcCcchH-HHHHHHHHHHHHHhhcChh-h-HHhhHHHHHHHHhcCcccchhhHHHhhhh
Q 009359 80 GLE-YA-----NVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMREQ-D-VVEHFIPLVKRLAAGEWFTARVSSCGLFH 150 (536)
Q Consensus 80 ~~~-~~-----~~ll~~l~~l~~~~~~~-vr~~a~~~l~~~~~~~~~~-~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~ 150 (536)
++. .. ..+.+.|..++.++++. +.+.+.++|..+.....-. . ......+.+..+.......++..++..+.
T Consensus 350 ~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~ 429 (2102)
T PLN03200 350 SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALS 429 (2102)
T ss_pred CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHH
Confidence 222 11 12345677888776554 4777888876543322110 0 11123445555566556678888888888
Q ss_pred hhccCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcCcchHHHHHHH
Q 009359 151 VAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAV 223 (536)
Q Consensus 151 ~~~~~~~~~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~ 223 (536)
.+...-.+. .....+|.|.+++.+++..+|..|+..++.++...... ......+|.+.+++.+++..+|+.|+
T Consensus 430 ~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAa 509 (2102)
T PLN03200 430 SLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSA 509 (2102)
T ss_pred HHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 887654332 22346789999999999999999999999998643221 12234789999999999999999999
Q ss_pred HhHHHhhcccCc-hhhh--hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHH
Q 009359 224 EGCGALGKLLEP-QDCV--AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300 (536)
Q Consensus 224 ~~l~~l~~~~~~-~~~~--~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a 300 (536)
.+++.++..-.. .... ...+|.+.+++++.+++++..++++|.++... ++ ...++.+..++..+++.++..+
T Consensus 510 wAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d----~~~I~~Lv~LLlsdd~~~~~~a 584 (2102)
T PLN03200 510 TVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-AD----AATISQLTALLLGDLPESKVHV 584 (2102)
T ss_pred HHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cc----hhHHHHHHHHhcCCChhHHHHH
Confidence 999999874221 1222 36888999999999999999999999999764 21 2345677788888888999999
Q ss_pred HHhHHHHHhhcChHHH------HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCC
Q 009359 301 AGKVTKICRILNPELA------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEF 371 (536)
Q Consensus 301 ~~~l~~~~~~~~~~~~------~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~ 371 (536)
+.+++.+......+.. ....++.+..++++.+..++..|+.++..++..-.. .......+|.+..++++.+
T Consensus 585 L~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~ 664 (2102)
T PLN03200 585 LDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT 664 (2102)
T ss_pred HHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC
Confidence 9999998775544321 135679999999999999999999999999763221 2234567899999999999
Q ss_pred HHHHHHHHHhhHHHHhhhchhH----HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchh--hHHHHHHHHHHHHh
Q 009359 372 PDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWL 445 (536)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l 445 (536)
.+++..++.+|..+......+. .....+|.|.+++++++..++..++.++..++...... ......++.+.+++
T Consensus 665 ~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL 744 (2102)
T PLN03200 665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVL 744 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH
Confidence 9999999999999986433322 23457888999999999999999999999998755322 23355689999999
Q ss_pred cCcchHHHHHHHHHHHHHHHHhChhh------hhhchhHHHHhhccCCChHHHHH--HHHHHHHHhhhhCh-HH------
Q 009359 446 KDKVYSIRDAAANNVKRLAEEFGPDW------AMQHIVPQVLEMINNPHYLYRMT--ILQAISLLAPVMGS-EI------ 510 (536)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~~~~~~~~------~~~~i~~~l~~~~~d~~~~~r~~--~~~~l~~l~~~~~~-~~------ 510 (536)
.+.++.+|..|+.+|..+++...... .....+..|..+++..|.+.-.. ++++++.+++.-+. .+
T Consensus 745 r~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~ 824 (2102)
T PLN03200 745 REGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWA 824 (2102)
T ss_pred HhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchh
Confidence 99999999999999999998866432 23567788888888777666655 89999988874221 11
Q ss_pred -H--HHhHHHHHHhhcCCccchhhh
Q 009359 511 -T--CSQLLPVVINASKDSESVAVT 532 (536)
Q Consensus 511 -~--~~~~~~~l~~~l~d~~~~vr~ 532 (536)
+ .+.-+..+..++.+..|.|.+
T Consensus 825 ~~~e~p~~l~~l~~~l~~~~p~~~~ 849 (2102)
T PLN03200 825 VLAEVPSSLEPLVRCLAEGHPLVQD 849 (2102)
T ss_pred hHHhccCchHHHHHHHHcCChHHHH
Confidence 1 112344555555777766654
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.87 E-value=5.7e-20 Score=194.00 Aligned_cols=275 Identities=20% Similarity=0.174 Sum_probs=194.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhH
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (536)
-++.|...++|+++.||..|++.|+.+.. +..++.|...++|+++.||..|+.+|..+.+..+. .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 34566777788888888888888887642 34567777788888888888888888777543322 2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHH
Q 009359 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (536)
Q Consensus 244 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~ 323 (536)
+.+...++++++.||..++..|+.+.. + -...+...++|+++.||..|+.+|+.+.. . +.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~-------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~----~-------~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA--G-------DAALFAAALGDPDHRVRIEAVRALVSVDD----V-------ES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--C-------CHHHHHHHhcCCCHHHHHHHHHHHhcccC----c-------HH
Confidence 455566677888888888888877531 1 12356677888888888888888887521 1 23
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHH
Q 009359 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (536)
Q Consensus 324 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 403 (536)
+..++.|+++.||..++.+|+.+...- ....+.+..+++|+++.||..|+.+|+.+... +.+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence 445678888888888888888775421 12256677788888888888888888777431 23345566
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhh
Q 009359 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483 (536)
Q Consensus 404 ~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 483 (536)
..++|++|.+|..++.+|+.+. .+..++.+..++.|++..||..|+.+|+.+. + .....+.|...
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~--------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAA--------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhcc--------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence 7778888888888888887653 1224466778888888888888888888851 1 23566777777
Q ss_pred ccCCChHHHHHHHHHHHH
Q 009359 484 INNPHYLYRMTILQAISL 501 (536)
Q Consensus 484 ~~d~~~~~r~~~~~~l~~ 501 (536)
++|++..||..+..+|..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 888888888888888764
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=99.87 E-value=1.9e-17 Score=166.88 Aligned_cols=494 Identities=12% Similarity=0.053 Sum_probs=335.2
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccc
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 88 (536)
++.++.+.|.+.+...|..|++.+-.. ...|.+ ...+.+-+.. +..++.++|+.....+..+++.. ++..-..+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~-mt~G~D--vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pelalLaI 107 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIAN-MTMGRD--VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKALLAV 107 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCC--chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHHHHHH
Confidence 477888999999998899998775443 234532 2334444444 67788999999888888775532 22233334
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHH-HHHHHHH
Q 009359 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEAL-KTELRTI 167 (536)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~-~~~l~~~ 167 (536)
+.|..-++|+++.+|..|+++++.+.. +.+.+.+.+.+.+...|+++.||..|+.++..++...++.. ...+.+.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 557777789999999999999887643 55677788888999999999999999999999987655432 3457788
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-hhhhhhhHHH
Q 009359 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAA-HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPV 245 (536)
Q Consensus 168 l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~ 245 (536)
+.+++.|+++.|...|+.+|..+....+.. ......+..+...+.+-++..+...++.+... .+. +.....++..
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y---~P~~~~e~~~il~~ 260 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQ---RPSDKESAETLLTR 260 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc---CCCCcHHHHHHHHH
Confidence 888999999999999999999997654321 11222334444455555666666666666442 222 2224567778
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc---ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhH
Q 009359 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 322 (536)
Q Consensus 246 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~ 322 (536)
+...+++.++.|..++++++..+......+.. ...+.+.++.++ ..++++|..++..+..+.... +..+... +.
T Consensus 261 l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~ 337 (746)
T PTZ00429 261 VLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLLRTN-LD 337 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHHHHH-HH
Confidence 88888899999999999998887654322111 112335556664 466899999999998887754 3333332 34
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHH
Q 009359 323 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (536)
Q Consensus 323 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l 402 (536)
.+....+|+.. +|...++.+..++..-+ ...++..+.....|.+.+++..++.+++.++..+. ...+..+..|
T Consensus 338 ~Ff~~~~Dp~y-IK~~KLeIL~~Lane~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~--~~a~~cV~~L 410 (746)
T PTZ00429 338 SFYVRYSDPPF-VKLEKLRLLLKLVTPSV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVD--SVAPDCANLL 410 (746)
T ss_pred hhhcccCCcHH-HHHHHHHHHHHHcCccc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 44445567664 89999999998876433 34566777777888889999999999999986553 3446777778
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh---cCcchHHHHHHHHHHHHHHHHhChhhhhhchhHH
Q 009359 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL---KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 479 (536)
Q Consensus 403 ~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 479 (536)
.+++++... +...++..+..+....... .+++.+...+ .=.++..|.+.++.+|+++..++. ...++..
T Consensus 411 l~ll~~~~~-~v~e~i~vik~IlrkyP~~----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~ 482 (746)
T PTZ00429 411 LQIVDRRPE-LLPQVVTAAKDIVRKYPEL----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQR 482 (746)
T ss_pred HHHhcCCch-hHHHHHHHHHHHHHHCccH----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHH
Confidence 777776443 3335566666665544432 2334444322 123567899999999999876543 2345544
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcC-Cccchhhhcc
Q 009359 480 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DSESVAVTYS 534 (536)
Q Consensus 480 l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~vr~~a 534 (536)
+.+-+.+.+..||...+.+..++.-..+.+ ....+...+..+.+ |.++.||.=|
T Consensus 483 ~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DVRDRA 537 (746)
T PTZ00429 483 FIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDVRDRA 537 (746)
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhHHHHH
Confidence 555555678889999999999988776654 23334444445545 4677888654
No 21
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.5e-18 Score=161.19 Aligned_cols=432 Identities=16% Similarity=0.109 Sum_probs=304.8
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC-cccchhhHHHhhhhhhccCCCh--HHHHHHHH
Q 009359 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAG-EWFTARVSSCGLFHVAYPSAPE--ALKTELRT 166 (536)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~ 166 (536)
++.....|+...+|..-+++........+.+.. ..+.|...+..+. .+...|.......+.+..+... .....++.
T Consensus 21 ~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~~v-~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~ 99 (569)
T KOG1242|consen 21 FLVSAGEDRRIDVRGNMLEAGEAAINQHGDQNV-LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIE 99 (569)
T ss_pred eecccCCCcchhhHHhHHHHHHHHHHhhhHHHH-HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHH
Confidence 333333677777777777776666555444333 3345554443333 3555666666665655554433 24455777
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhh-hhhhHHH
Q 009359 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC-VAHILPV 245 (536)
Q Consensus 167 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~ 245 (536)
.+..-++.+++.+|.+...++..+.-.... .-...+.+.+.++++...-.-|..+...+..+....+.+.. ...++..
T Consensus 100 ~~~~~~~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~ 178 (569)
T KOG1242|consen 100 ILLEELDTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDN 178 (569)
T ss_pred HHHHhcCCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHH
Confidence 888888899999999999999987755432 22355677777788877777888888888888877665332 3456777
Q ss_pred HHHhcCCCC-HHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhH
Q 009359 246 IVNFSQDKS-WRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 322 (536)
Q Consensus 246 l~~~~~d~~-~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~ 322 (536)
+.+...|+. ...|..+..++......+|... +.-.++|.++....|..+.||.+|..+...+...+....+. .++|
T Consensus 179 l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-~llp 257 (569)
T KOG1242|consen 179 LSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-LLLP 257 (569)
T ss_pred HHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-Hhhh
Confidence 777788864 4455566677777777777533 33467788888889999999999999999998887776653 3334
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhhhhCHH--HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHH
Q 009359 323 CVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (536)
Q Consensus 323 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~ 400 (536)
.+..-+.+..|+.+.++++.++.++...+.. ...+.++|.+...+.|..++||.++..++..++..+.+..+ +.++|
T Consensus 258 sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip 336 (569)
T KOG1242|consen 258 SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIP 336 (569)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHH
Confidence 4433333449999999999999888766543 45689999999999999999999999999999998887775 78889
Q ss_pred HHHHhhcCCChHHHHHHHHHHH-HHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhh----hhc
Q 009359 401 AIVELAEDRHWRVRLAIIEYIP-LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQH 475 (536)
Q Consensus 401 ~l~~~~~~~~~~~R~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~ 475 (536)
.+.+.+.|++..+....-.... .++..+.. .-...++|++.+.+.+.+...+..++..++.++.-...+.. ...
T Consensus 337 ~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~ 415 (569)
T KOG1242|consen 337 TLLDALADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS 415 (569)
T ss_pred HHHHHhcCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH
Confidence 9999999887554433221111 11111221 12466888899999999999999999999999888744322 255
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCcc
Q 009359 476 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSE 527 (536)
Q Consensus 476 i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~ 527 (536)
++|.+...+.|+.+.+|..+.++++.+.+.+|...+ ....|.+.....+.-
T Consensus 416 Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k 466 (569)
T KOG1242|consen 416 LLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEK 466 (569)
T ss_pred HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccch
Confidence 666677777788899999999999999888887655 666777777665543
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.86 E-value=5.1e-17 Score=150.30 Aligned_cols=472 Identities=12% Similarity=0.099 Sum_probs=333.1
Q ss_pred ccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcc-hHHHHHHHHHHHHHHhhcChhhHHhh----HHHHH
Q 009359 56 NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMREQDVVEH----FIPLV 130 (536)
Q Consensus 56 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~-~~vr~~a~~~l~~~~~~~~~~~~~~~----l~~~l 130 (536)
+.+..|..-..|+..++.++...-+...|+.+...+.....+++ ..++..++..++..+....++..... +....
T Consensus 103 L~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv 182 (858)
T COG5215 103 LKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIV 182 (858)
T ss_pred hcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHH
Confidence 67888888899999999998866555667777777666666654 45788899999999998887554432 33333
Q ss_pred HHHhcC-cccchhhHHHhhhhhhccC-----CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHH
Q 009359 131 KRLAAG-EWFTARVSSCGLFHVAYPS-----APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKS 201 (536)
Q Consensus 131 ~~l~~~-~~~~~r~~a~~~l~~~~~~-----~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~ 201 (536)
....+. +...+|.++..++..-... ..++.+..++....+..+.++.+++.+|.-+|..+...... ....+
T Consensus 183 ~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~ 262 (858)
T COG5215 183 MGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN 262 (858)
T ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 3667899988887663322 23346677888889999999999999999999988754332 22234
Q ss_pred HHHHHHHHhhcCcchHHHHHHHHhHHHhhccc----------Cc---h------hhhhhhHHHHHHhcC-------CCCH
Q 009359 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLL----------EP---Q------DCVAHILPVIVNFSQ-------DKSW 255 (536)
Q Consensus 202 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----------~~---~------~~~~~l~~~l~~~~~-------d~~~ 255 (536)
.+.....+.+++++++|...|++.++++++.- ++ + .-...++|-+.+++. +++|
T Consensus 263 aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW 342 (858)
T COG5215 263 ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW 342 (858)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 45556667788999999999999998887521 10 0 113347777777653 3589
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH---HHHHhhhHHHHHhccCCC
Q 009359 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSS 332 (536)
Q Consensus 256 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~i~~~l~~l~~d~~ 332 (536)
.+-.++..+|.-+++..|+... +.++.++.+.+..+++.-|.+|+-+++.+...-... .+.+..+|.+.....|+.
T Consensus 343 n~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~ 421 (858)
T COG5215 343 NPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC 421 (858)
T ss_pred chhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce
Confidence 9999999999999988887653 347788888889999999999999999987732222 345677888888889999
Q ss_pred HHHHHHHHHHHHHhhhhhCH----H-----------------------------H------------------HHHhHHH
Q 009359 333 QHVRSALATVIMGMAPILGK----D-----------------------------A------------------TIEQLLP 361 (536)
Q Consensus 333 ~~vr~~a~~~l~~l~~~~~~----~-----------------------------~------------------~~~~l~~ 361 (536)
-.|+..++++++.++..+.. . . |...++.
T Consensus 422 l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~ 501 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILN 501 (858)
T ss_pred eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHH
Confidence 99999999999988664321 0 0 0111122
Q ss_pred HHHHh--hCCCCHHHHHHHHHhhHHHHhhhchhH------HHhhHHHHHHHhhc---------CC--ChHHHHHHHHHHH
Q 009359 362 IFLSL--LKDEFPDVRLNIISKLDQVNQVIGIDL------LSQSLLPAIVELAE---------DR--HWRVRLAIIEYIP 422 (536)
Q Consensus 362 ~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~i~~~l~~~~~---------~~--~~~~R~~a~~~l~ 422 (536)
.++.. +.+.+...|.+++.+|+.++....... +...+...+.+..+ |. ...+....+..+.
T Consensus 502 ~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~ 581 (858)
T COG5215 502 ALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLE 581 (858)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22221 235667889999999999886544211 01111112211111 11 1335556777777
Q ss_pred HHHhhhch--hhHHHHHHHHHHHHhcCcch-HHHHHHHHHHHHHHHHhChhhh--hhchhHHHHhhccCCChHHHHHHHH
Q 009359 423 LLASQLGV--GFFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQ 497 (536)
Q Consensus 423 ~l~~~~~~--~~~~~~l~~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~~r~~~~~ 497 (536)
.+....++ +...+.++.++++.++...+ .+-.-...+++.+...++..|. .+.++|.+.+-++..++.+-..++.
T Consensus 582 aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avg 661 (858)
T COG5215 582 AIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVG 661 (858)
T ss_pred HHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHH
Confidence 77777776 44678899999999987744 4566677888888887776543 3789999999888889999999999
Q ss_pred HHHHHhhhhChHH--HHHhHHHHHHhhcCCccc
Q 009359 498 AISLLAPVMGSEI--TCSQLLPVVINASKDSES 528 (536)
Q Consensus 498 ~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~ 528 (536)
.++.++..+|.+| +...++..|..+++.+..
T Consensus 662 lvgdlantl~~df~~y~d~~ms~LvQ~lss~~~ 694 (858)
T COG5215 662 LVGDLANTLGTDFNIYADVLMSSLVQCLSSEAT 694 (858)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhh
Confidence 9999999999887 566678888888877643
No 23
>PRK09687 putative lyase; Provisional
Probab=99.86 E-value=9.3e-20 Score=164.42 Aligned_cols=254 Identities=19% Similarity=0.211 Sum_probs=200.5
Q ss_pred HHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 009359 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (536)
Q Consensus 203 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 282 (536)
-.+.+...+.|++..||..++..|..+.. +.+++.+..+++|+++.+|..++..|+.+...- ......+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~---~~~~~a~ 92 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK---RCQDNVF 92 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc---cchHHHH
Confidence 34556667899999999999999988763 457788888899999999999999999975311 0023567
Q ss_pred HHHHHh-cCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHH
Q 009359 283 PAYVRL-LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 361 (536)
Q Consensus 283 ~~l~~l-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 361 (536)
+.+..+ ++|+++.||..|+.+++.++.... ......++.+.....|++|.||..++.+++.+.. +..++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHH
Confidence 888876 789999999999999999864221 1123445556667789999999999999987742 35678
Q ss_pred HHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 009359 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441 (536)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l 441 (536)
.+...++|+++.||..|+.+|+.+.. + .+...+.|...++|.++.+|..++.+++.+. .+..+|.+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~L 228 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSVL 228 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHHH
Confidence 89999999999999999999998821 1 2467788888899999999999999997753 23578888
Q ss_pred HHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhcc-CCChHHHHHHHHHHHH
Q 009359 442 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISL 501 (536)
Q Consensus 442 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~~r~~~~~~l~~ 501 (536)
.+.+.|++ +|..++.++|.+.. +..+|.|.+++. ++|..++..+.+++.+
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 89998866 78888899888753 478999999886 7899999999998865
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.85 E-value=4.3e-17 Score=158.99 Aligned_cols=512 Identities=13% Similarity=0.155 Sum_probs=342.9
Q ss_pred HHHHHhcChhHHHHHHHhhhHHHHHH----hhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhcc
Q 009359 13 VLIDELKNDDIQLRLNSIRRLSTIAR----ALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (536)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~~~~----~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 87 (536)
.|+++|.|.|.+.|.+|...|..--. .+..+. ...++..+.+ +.|.+++|+..|.+|+|-+++.++.. ....+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dS-e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~-~le~~ 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDS-ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED-QLETI 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccc-hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH-HHHHH
Confidence 78999999999999999877654311 112122 2233333334 77899999999999999999877643 33444
Q ss_pred chHHHhhhcCcchHHHHHHHHHHHHHHhhcCh-------hhHHhhHHHHHHHHhc--CcccchhhHHHhhhhhhccCCCh
Q 009359 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------QDVVEHFIPLVKRLAA--GEWFTARVSSCGLFHVAYPSAPE 158 (536)
Q Consensus 88 l~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~-------~~~~~~l~~~l~~l~~--~~~~~~r~~a~~~l~~~~~~~~~ 158 (536)
.+-|..-+-++.+..|..+.-.|..+...+++ ..+...+.|.+..... .+...++.-++.+++.+..+.+.
T Consensus 87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ 166 (1233)
T KOG1824|consen 87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT 166 (1233)
T ss_pred HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence 44333322344566788888888888887765 2223334555444332 23456888888888887766554
Q ss_pred ---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-cCcchHHHHHHHHhHHHhhcccC
Q 009359 159 ---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 159 ---~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~ 234 (536)
+....++..+..-+..+-..||+.|+.+|+.++...+.+.+.. ++..+...+ +..+...-...+++++.++...|
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~-li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVE-LIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 2455566666666778888999999999999999887766644 444444444 44455555567899999998877
Q ss_pred c--hhhhhhhHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcC-C---------------
Q 009359 235 P--QDCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLR-D--------------- 291 (536)
Q Consensus 235 ~--~~~~~~l~~~l~~~~---~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~-d--------------- 291 (536)
. ....+.++|.+.+.+ +..+.+.|..+.++++.+....+.+.. .+.++..+++.++ |
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~ 325 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMF 325 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhh
Confidence 6 345678899998887 666788999999999999887766543 2245555554442 1
Q ss_pred ------------------CcHHHHHHHHHhHHHHHhhcC--hHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC
Q 009359 292 ------------------NEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 351 (536)
Q Consensus 292 ------------------~~~~vr~~a~~~l~~~~~~~~--~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 351 (536)
-.|.||.+|++++..+...-. -..+...+-|.+....++....||.....++-.+..+.+
T Consensus 326 ~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 326 LEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTR 405 (1233)
T ss_pred hhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Confidence 127899999999988765321 123456666777777788888888877766655443322
Q ss_pred H----------------H---HH----HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch--hHHHhhHHHHHHHhh
Q 009359 352 K----------------D---AT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELA 406 (536)
Q Consensus 352 ~----------------~---~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~ 406 (536)
. . .. ...++..+.+.+++..-.-|..++..+..++..+.. ......++|-+...+
T Consensus 406 ~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l 485 (1233)
T KOG1824|consen 406 PVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSL 485 (1233)
T ss_pred CCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhc
Confidence 0 0 01 123445555555555445677777777777655432 122366788888888
Q ss_pred cCCC--hHHHHHHHHHHHHHHhhhchhhHH---HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhh---------h
Q 009359 407 EDRH--WRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---------A 472 (536)
Q Consensus 407 ~~~~--~~~R~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---------~ 472 (536)
+|++ ...+..++..+..+....+++.|. +.+.|.+.....|+-+.|-..|+-..+++++.+.+.. .
T Consensus 486 ~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 486 NDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred CCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 8875 567777777777776667776664 5577788888899999999999999999888764321 1
Q ss_pred hhchhHHHHhh--ccCCChHHHHHHHHHHHHHhhhhChHH---HHHhHHHHHHhhcCCccc
Q 009359 473 MQHIVPQVLEM--INNPHYLYRMTILQAISLLAPVMGSEI---TCSQLLPVVINASKDSES 528 (536)
Q Consensus 473 ~~~i~~~l~~~--~~d~~~~~r~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~ 528 (536)
...++...++. .+|.|-.||+.++.+++.+...+| ++ ..+.++|.+.+-+.+...
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~eRl~nEiT 625 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLERLGNEIT 625 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhchhH
Confidence 23344444443 446788899999999999888777 32 456677777776666654
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.84 E-value=1.2e-16 Score=156.03 Aligned_cols=467 Identities=16% Similarity=0.164 Sum_probs=305.0
Q ss_pred CCchHHHHHHHHHHhchhcccCC--ccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc
Q 009359 58 DDDDEVLLAMAEELGVFIPYVGG--LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAA 135 (536)
Q Consensus 58 d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 135 (536)
.+...++..+...++......|. +++-..++..+..-+..+-..||+.++.+++.++...+.+-+...+..+++++.+
T Consensus 144 e~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~ 223 (1233)
T KOG1824|consen 144 EDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSN 223 (1233)
T ss_pred ccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 44556777777777666555543 2344455555444456778889999999999999999988888777788888887
Q ss_pred CcccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHH
Q 009359 136 GEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLC---QDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIF 207 (536)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll---~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l 207 (536)
..+...-.....+++.++...+.. +...+.|.+.+.+ +..+.+.|+.++++++.|....+.+ .++++++..+
T Consensus 224 ~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~ 303 (1233)
T KOG1824|consen 224 RTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLC 303 (1233)
T ss_pred CCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHH
Confidence 766555556677888887777664 6677888888888 6677899999999999999988764 4566777776
Q ss_pred HHhhc----------------------------------CcchHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcC
Q 009359 208 EELTQ----------------------------------DDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQ 251 (536)
Q Consensus 208 ~~~l~----------------------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~ 251 (536)
.+++. |-.|.||.+|++++..+...-.+ ..+...+-|.+..-++
T Consensus 304 l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~Rfk 383 (1233)
T KOG1824|consen 304 LSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFK 383 (1233)
T ss_pred HHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHH
Confidence 66541 12488999999999887643222 2233445555555555
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCC---------------------------------------------------------
Q 009359 252 DKSWRVRYMVANQLYELCEAVGP--------------------------------------------------------- 274 (536)
Q Consensus 252 d~~~~vR~~~~~~l~~l~~~~~~--------------------------------------------------------- 274 (536)
+....||.-+..++-.+....+.
T Consensus 384 EREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli 463 (1233)
T KOG1824|consen 384 EREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELI 463 (1233)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHH
Confidence 55556665555554444332210
Q ss_pred -----Cc--cccchHHHHHHhcCCCc--HHHHHHHHHhHHHHHhhcChHHHH---HhhhHHHHHhccCCCHHHHHHHHHH
Q 009359 275 -----EP--TRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELAI---QHILPCVKELSSDSSQHVRSALATV 342 (536)
Q Consensus 275 -----~~--~~~~l~~~l~~ll~d~~--~~vr~~a~~~l~~~~~~~~~~~~~---~~i~~~l~~l~~d~~~~vr~~a~~~ 342 (536)
.. ....++|-+...+.|.+ ...+..++..+.......+++.+. +.+.|.+.....|+-+.+-..|+..
T Consensus 464 ~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v 543 (1233)
T KOG1824|consen 464 NVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLV 543 (1233)
T ss_pred HhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHH
Confidence 00 01122233333333221 223333333333333333444332 2334444555677788887777777
Q ss_pred HHHhhhhhC---------HHHHHHhHHHHHHHhh--CCCCHHHHHHHHHhhHHHHhhhchhH--HHhhHHHHHHHhhcCC
Q 009359 343 IMGMAPILG---------KDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR 409 (536)
Q Consensus 343 l~~l~~~~~---------~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~~~ 409 (536)
.+++++.+. ...+...+....++.+ +|.+.+||+.|+.|++.++..+|... ..+..+|.+.+-+ +
T Consensus 544 ~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl--~ 621 (1233)
T KOG1824|consen 544 CQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL--G 621 (1233)
T ss_pred HHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--h
Confidence 777765432 2233344444444444 47788999999999999999988421 1133344443333 3
Q ss_pred ChHHHHHHHHHHHHHHhhh---chhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhh---hhhchhHHHHhh
Q 009359 410 HWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEM 483 (536)
Q Consensus 410 ~~~~R~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~ 483 (536)
+...|..+++++..++... ........++|.+..++.-.....|.+...++..+.++++... ..+.++..+..+
T Consensus 622 nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~L 701 (1233)
T KOG1824|consen 622 NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPL 701 (1233)
T ss_pred chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhh
Confidence 5678999999999887632 2233456788888888888888899999999999998886542 225566666777
Q ss_pred ccCCChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCCc
Q 009359 484 INNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDS 526 (536)
Q Consensus 484 ~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~ 526 (536)
+.+.+..+-..++.++..+....+... ..+.+++.++.++..|
T Consensus 702 isesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 702 ISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 888899999999999999877665433 4666777777776654
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.83 E-value=1.2e-18 Score=184.06 Aligned_cols=274 Identities=19% Similarity=0.169 Sum_probs=217.3
Q ss_pred HHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 009359 127 IPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSI 206 (536)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 206 (536)
++.+...++|+++.+|..|+..++.... +..++.|..+++|+++.||..|+.+|+.+....+. .+.
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~ 688 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APA 688 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHH
Confidence 4455666789999999999999887642 34677888889999999999999999988653321 245
Q ss_pred HHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q 009359 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV 286 (536)
Q Consensus 207 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 286 (536)
+...++++++.||..++..|+.+.. +. ...+...+.|+++.||..++.+|+.+.. .+.+.
T Consensus 689 L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~ 748 (897)
T PRK13800 689 LRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VESVA 748 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHHH
Confidence 6667888999999999999988752 11 1345668899999999999999987521 14567
Q ss_pred HhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHh
Q 009359 287 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 366 (536)
Q Consensus 287 ~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (536)
.++.|++++||.+++.+|+.+...- ....+.+..++.|+++.||..++.+|+.+... +.+.+.+...
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~a 815 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATAA 815 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHHH
Confidence 8899999999999999999986521 12246677888999999999999999988532 2233557888
Q ss_pred hCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc
Q 009359 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK 446 (536)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 446 (536)
++|+++.||..|+.+|+.+.. +..++.|...++|+++.||..++.+|+.+. + .+...+.+...++
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~al~ 880 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTALT 880 (897)
T ss_pred hcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHHHh
Confidence 999999999999999988653 456688999999999999999999998851 1 2235667789999
Q ss_pred CcchHHHHHHHHHHHH
Q 009359 447 DKVYSIRDAAANNVKR 462 (536)
Q Consensus 447 d~~~~Vr~~a~~~l~~ 462 (536)
|++..||..|..+|..
T Consensus 881 D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 881 DSDADVRAYARRALAH 896 (897)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999999863
No 27
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.83 E-value=1.8e-16 Score=147.95 Aligned_cols=499 Identities=17% Similarity=0.164 Sum_probs=347.6
Q ss_pred HhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCC-chHHHHHHHHHHhchhcccCCc--cchhccchHHH
Q 009359 17 ELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGL--EYANVLLPPLE 92 (536)
Q Consensus 17 ~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~ 92 (536)
-+.|.|+=+|.-..++.+.++.++| .++++||+.. +.+- +.+-|+...++..+++...|.. .|..-++.++.
T Consensus 289 Di~~~deYVRnvt~ra~~vva~alg----v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~ 364 (975)
T COG5181 289 DITSKDEYVRNVTGRAVGVVADALG----VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCIS 364 (975)
T ss_pred CcccccHHHHHHHHHHHHHHHHhhC----cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHH
Confidence 3567888888888888888888888 4677899877 5443 6677888888888887766643 35566677788
Q ss_pred hhhcCcchHHHHHHHHHHHHHHhhcCh---hhHHhhHHHHHHHHhcCcc-----------------------cchhhHH-
Q 009359 93 TLCTVEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKRLAAGEW-----------------------FTARVSS- 145 (536)
Q Consensus 93 ~l~~~~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~~~~-----------------------~~~r~~a- 145 (536)
.++.|.+..||.-+..++..+++...+ +++...+.|+-....++.. ...|...
T Consensus 365 ~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~ 444 (975)
T COG5181 365 KLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHME 444 (975)
T ss_pred HHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHH
Confidence 888999999999888888888887654 2222333333322221110 0000000
Q ss_pred ----------------------------------------HhhhhhhccC--CCh-----H------------HHHHHHH
Q 009359 146 ----------------------------------------CGLFHVAYPS--APE-----A------------LKTELRT 166 (536)
Q Consensus 146 ----------------------------------------~~~l~~~~~~--~~~-----~------------~~~~l~~ 166 (536)
+..+...+.. .++ . --.++..
T Consensus 445 iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~ 524 (975)
T COG5181 445 IVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSR 524 (975)
T ss_pred HHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHH
Confidence 0000000000 000 0 0012333
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHhh--------------------------------------------hhhHHH
Q 009359 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEA--------------------------------------------AHLKSE 202 (536)
Q Consensus 167 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--------------------------------------------~~~~~~ 202 (536)
.+.+-..|+..-.|..++.+...+...+|. ..+...
T Consensus 525 kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ 604 (975)
T COG5181 525 KILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSM 604 (975)
T ss_pred HHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHH
Confidence 444445565555666666666666555441 112345
Q ss_pred HHHHHHHhhcCcchHHHHHHHHhHHHhhccc---CchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---c
Q 009359 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLL---EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---P 276 (536)
Q Consensus 203 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~ 276 (536)
++..+.+.++++.+.+|..|++.++.++..+ ++.....++=..+.+.+....++|--...+++..+....+-. .
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp 684 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP 684 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence 6666777888999999999999988877654 455555666667777778888888888888888777766543 2
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc----ChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH
Q 009359 277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL----NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352 (536)
Q Consensus 277 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~----~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 352 (536)
....++|.+...++..+..|....+..++.++..- +...+....+. +..++...+..+|++|.+++|.++..+|+
T Consensus 685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfe-Lvd~Lks~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFE-LVDSLKSWNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence 24578999999999999999999999999998753 44444433333 44555677889999999999999999997
Q ss_pred HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhh
Q 009359 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (536)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~ 432 (536)
. .++..++..|+-.+...|....-+++-+++..|+ =.++|.+..-...++-.++...++++..+.+..|...
T Consensus 764 q----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp----fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s 835 (975)
T COG5181 764 Q----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP----FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS 835 (975)
T ss_pred H----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc----hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH
Confidence 6 4566777788888888888888888888888876 3578888777888899999999999999999888754
Q ss_pred --HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhC---hhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhC
Q 009359 433 --FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 433 --~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~ 507 (536)
+.-.+.|++...+.|.++.-|+.|...+..+.-+.. .+...-.+++.|..-.-++.+.+.+...+++..++..+|
T Consensus 836 ~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg 915 (975)
T COG5181 836 LDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLG 915 (975)
T ss_pred HHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhc
Confidence 345689999999999999999999999998876642 222223455666666778999999999999999999999
Q ss_pred hHHHHHhHHHHHHhhcCCccchhhh
Q 009359 508 SEITCSQLLPVVINASKDSESVAVT 532 (536)
Q Consensus 508 ~~~~~~~~~~~l~~~l~d~~~~vr~ 532 (536)
...+..|+...| =.|...||.
T Consensus 916 ~g~~m~Yv~qGL----FHPs~~VRk 936 (975)
T COG5181 916 SGAMMKYVQQGL----FHPSSTVRK 936 (975)
T ss_pred cHHHHHHHHHhc----cCchHHHHH
Confidence 876666555444 456666653
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=99.82 E-value=1.4e-15 Score=153.51 Aligned_cols=475 Identities=11% Similarity=0.066 Sum_probs=323.4
Q ss_pred CCCCCCCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCC
Q 009359 1 MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG 80 (536)
Q Consensus 1 ~~~~~~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~ 80 (536)
|.+|.+-..-+...+..+.++|...|+-.--.+...+... |+...-.+-.+..++.|.+|.+|..|.+.++.+ ..
T Consensus 60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pelalLaINtl~KDl~d~Np~IRaLALRtLs~I----r~ 134 (746)
T PTZ00429 60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI----RV 134 (746)
T ss_pred HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC----Cc
Confidence 3455554444677788999999999998877776664422 333222233344459999999999999999887 33
Q ss_pred ccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH-
Q 009359 81 LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA- 159 (536)
Q Consensus 81 ~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~- 159 (536)
+...+.+.+.+...+.|+++.||+.|+-++.++....+.-.....+.+.+..+..|.++.+...|..++..+....+..
T Consensus 135 ~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 135 SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 5667778888888889999999999999999998765432222346677777889999999999999988887654432
Q ss_pred -HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch-
Q 009359 160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ- 236 (536)
Q Consensus 160 -~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 236 (536)
.....+..+...+.+-++.-+...++.|... .+. +.....++..+...+++.++.|..+|++++-.+.....++
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y---~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~ 291 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ---RPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQEL 291 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHH
Confidence 2233444455555666667777777776442 221 2223567777888888999999999999998887654332
Q ss_pred --hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH
Q 009359 237 --DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (536)
Q Consensus 237 --~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (536)
.....+.+.+..+. +.++.+|..+...+..+....+ ..+.. -+..|.-..+|+. .||...+..+..++.. .
T Consensus 292 ~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P-~lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane---~ 364 (746)
T PTZ00429 292 IERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFP-NLLRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTP---S 364 (746)
T ss_pred HHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCH-HHHHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCc---c
Confidence 11222334445554 4567899999999988876532 12222 2444555557876 5898888888888653 2
Q ss_pred HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHH
Q 009359 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (536)
Q Consensus 315 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 394 (536)
. ...++.-+.....+.+...+..++++++.++..+.. ....++..+..++.+....+ ..++..+..+.......
T Consensus 365 N-v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~-- 438 (746)
T PTZ00429 365 V-APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPEL-- 438 (746)
T ss_pred c-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccH--
Confidence 2 255666677777888999999999999999976643 45677888888887755433 45677777776654432
Q ss_pred HhhHHHHHHHhh---cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhh
Q 009359 395 SQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (536)
Q Consensus 395 ~~~i~~~l~~~~---~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 471 (536)
.+++.+.... .-.+...|.+.++.++..+..+.. ...++..+..-+.+..+.||...+.+..++.-..+.+
T Consensus 439 --~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~- 512 (746)
T PTZ00429 439 --LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG- 512 (746)
T ss_pred --HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-
Confidence 2445444432 124578899999999998876643 2344444455556778899999999999888765433
Q ss_pred hhhchhHHHHh-hcc-CCChHHHHHHHHHHHHHh
Q 009359 472 AMQHIVPQVLE-MIN-NPHYLYRMTILQAISLLA 503 (536)
Q Consensus 472 ~~~~i~~~l~~-~~~-d~~~~~r~~~~~~l~~l~ 503 (536)
. +..+..+.+ ..+ +.|+++|..|...+.-+.
T Consensus 513 ~-~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 513 M-EPQLNRVLETVTTHSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred H-HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHc
Confidence 1 334444443 334 468899999987776554
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=6.3e-17 Score=149.58 Aligned_cols=421 Identities=14% Similarity=0.126 Sum_probs=301.7
Q ss_pred CcchHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCC---hHHHHHHHHHHH
Q 009359 97 VEETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP---EALKTELRTIYR 169 (536)
Q Consensus 97 ~~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~---~~~~~~l~~~l~ 169 (536)
|.-.+-|++|..-+.++.+.+-. +.+...+-.+.......++...|..+..-++.+.-..+ ..+...+++...
T Consensus 11 dKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~ 90 (675)
T KOG0212|consen 11 DKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVL 90 (675)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHH
Confidence 44444555555555555554322 11222222233344444455555544433333322222 237888999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc----hhhhhhhH
Q 009359 170 QLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHIL 243 (536)
Q Consensus 170 ~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~ 243 (536)
.+++|++..||..|++.+-++++....+ .+.+.++..+.++..|.+..||. +.+.+..+.+.+.- ....+.++
T Consensus 91 ~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~i 169 (675)
T KOG0212|consen 91 NCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFI 169 (675)
T ss_pred HhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHH
Confidence 9999999999999999999999987764 56788999999999999988885 55666666554322 22467799
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHH---HHH
Q 009359 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQ 318 (536)
Q Consensus 244 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~ 318 (536)
|.+...+.+.++.+|......+..+-..-+-++ +.+.+++.+.++++|+..+||.-+-.+++.+...+..+. -.+
T Consensus 170 pLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~ 249 (675)
T KOG0212|consen 170 PLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYD 249 (675)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcc
Confidence 999999999999999999999988765433333 356789999999999999999999999999888775431 125
Q ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHH--HHHhHHHHHHHhhCCCCH-HHHHHHHHhhHHHHhhhchhHHH
Q 009359 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLS 395 (536)
Q Consensus 319 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~ 395 (536)
.+++.+..-...+++.++..|+.++..+.+..|.+. +...++..++.++.|.++ ..+..+...-+.+...++.+...
T Consensus 250 ~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~ 329 (675)
T KOG0212|consen 250 DMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK 329 (675)
T ss_pred cchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc
Confidence 566777666778899999999999999998877654 335666777777877766 57777776666666665544332
Q ss_pred -----hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH--HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhC
Q 009359 396 -----QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (536)
Q Consensus 396 -----~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (536)
..++..+.+.+.+.....|.+++.++..+-...+.+.+ .+.+.+.+++.++|++..|-..++..++.++..-.
T Consensus 330 ~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 330 EEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred cccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 36788888889999999999999999999888777654 46789999999999999999999999999987643
Q ss_pred hhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHH
Q 009359 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 519 (536)
Q Consensus 469 ~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l 519 (536)
..- --+++..|.+++.......+..+--.+-++|..+.++.++..+-..+
T Consensus 410 ~~~-~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL 459 (675)
T KOG0212|consen 410 SPN-LRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL 459 (675)
T ss_pred ccc-HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 321 13455566666666666677777777778887777765554444333
No 30
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=1.5e-17 Score=166.14 Aligned_cols=271 Identities=20% Similarity=0.237 Sum_probs=161.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc------hhhhhhhHHHHHHh
Q 009359 176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------QDCVAHILPVIVNF 249 (536)
Q Consensus 176 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~ 249 (536)
....+..|++.|..++.....+...+.++|++..++.|+...||..|++++..+...+.+ ..+.+.++|.+..+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 346778899999999999888888999999999999999999999999999888765533 35678899999999
Q ss_pred cCC-CCHHHHHHHHHHHHHHHHHhCC---------------Cc---------c-------ccchHHHHHHhcCCCcHHHH
Q 009359 250 SQD-KSWRVRYMVANQLYELCEAVGP---------------EP---------T-------RSDVVPAYVRLLRDNEAEVR 297 (536)
Q Consensus 250 ~~d-~~~~vR~~~~~~l~~l~~~~~~---------------~~---------~-------~~~l~~~l~~ll~d~~~~vr 297 (536)
+.| ....||.+.+.+|+.++...-. +. + ...+-....+++.|+.+.||
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vk 595 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVK 595 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 999 6778999999999999865210 00 0 00122233344445555555
Q ss_pred HHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHH
Q 009359 298 IAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLN 377 (536)
Q Consensus 298 ~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 377 (536)
.+.++++..+|.++|++.-.+.+++.+...++|++|+.|.+..+.|..++-.+|.....+.++|.+.+.|.|.++.|-..
T Consensus 596 r~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~ 675 (1431)
T KOG1240|consen 596 RALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVS 675 (1431)
T ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHH
Confidence 55555555555555555444455555555555555555555555555554444544444555555555555555555555
Q ss_pred HHHhhHHHHhhhchh-HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc
Q 009359 378 IISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK 446 (536)
Q Consensus 378 a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 446 (536)
|+.++..+++.--.+ .....++..+..++..++-.+|.+++..|..++..++.....-.++|++-.++.
T Consensus 676 aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 676 ALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 555544444321111 111233333444444444445555555555554444444444444444444443
No 31
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=3.7e-16 Score=159.80 Aligned_cols=468 Identities=19% Similarity=0.208 Sum_probs=316.5
Q ss_pred ccCCchHHHHHHHHHHhchhcccCC-cc---chhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHH
Q 009359 56 NNDDDDEVLLAMAEELGVFIPYVGG-LE---YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVK 131 (536)
Q Consensus 56 ~~d~~~~vr~~a~~~l~~l~~~~~~-~~---~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 131 (536)
+.+.+|..|++.+-.|-.++.++|. +. ..+.|..-+..++.|+++-+++.|.+.++-+-+.-+.+.....+-.++.
T Consensus 827 ~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~ 906 (1702)
T KOG0915|consen 827 LTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVN 906 (1702)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHH
Confidence 5577899999999999888888874 22 3455666678888999999999999998876554333333333444555
Q ss_pred HHhcCcccchhhHHH-hhh--hhhccCCCh---------------HHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHH
Q 009359 132 RLAAGEWFTARVSSC-GLF--HVAYPSAPE---------------ALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAA 192 (536)
Q Consensus 132 ~l~~~~~~~~r~~a~-~~l--~~~~~~~~~---------------~~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~ 192 (536)
.+..++-......+- +++ +.+.+..+. -..++++-.++++.+ +..|.-|..|+..++.+++
T Consensus 907 tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~ 986 (1702)
T KOG0915|consen 907 TLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK 986 (1702)
T ss_pred HHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHH
Confidence 555443211111111 111 111111111 123456666666665 4579999999999999998
Q ss_pred HHhh--hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009359 193 TVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (536)
Q Consensus 193 ~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l 268 (536)
..+. +.+...++|.+..+=.|++..|+.+-...++.+...-.. +.+.+.|+.-+...+.++.|+||.++|-++..+
T Consensus 987 ~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 8765 467788999999999999999999999999988764333 557778888888889999999999999999999
Q ss_pred HHHhCCCccccc---hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc---C-------hHHHHHhhhHHHHH-hccCCCHH
Q 009359 269 CEAVGPEPTRSD---VVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---N-------PELAIQHILPCVKE-LSSDSSQH 334 (536)
Q Consensus 269 ~~~~~~~~~~~~---l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~---~-------~~~~~~~i~~~l~~-l~~d~~~~ 334 (536)
.+.-+.+...++ ++..+.+.+.|-...||.+|-++...+++.+ + ...+...++|++.. -.-+.-..
T Consensus 1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence 876555544443 4555556667888889998877666555543 1 23556888888853 22266789
Q ss_pred HHHHHHHHHHHhhhhhCHH--HHHHhHHHHHHHhhCCCCHHH-------------------HHHHHH------hhHHHHh
Q 009359 335 VRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDV-------------------RLNIIS------KLDQVNQ 387 (536)
Q Consensus 335 vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~v-------------------r~~a~~------~l~~l~~ 387 (536)
||..++.++..+++..|.. .+.+.++|.+.+.+..-++.| |..+++ +++.+++
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 9999999999999887764 345778888888776544433 222222 1222222
Q ss_pred hhchhHHHhhHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 009359 388 VIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (536)
Q Consensus 388 ~~~~~~~~~~i~~~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (536)
.+. ..+.+.++|.+.++.... .-..|..+...+..++..+|.+. +...++..++..+.|.++.||.+.+.++|.+.
T Consensus 1227 ~iD-~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YID-ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhh-HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 222 234478889888888754 57788999999999999888765 56788999999999999999999999999999
Q ss_pred HHhChhhhhhchhHHH-HhhccCCChHHHHHHHHHHHHHhhhhChH--HHHHhHHHHHHhhcCCc
Q 009359 465 EEFGPDWAMQHIVPQV-LEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDS 526 (536)
Q Consensus 465 ~~~~~~~~~~~i~~~l-~~~~~d~~~~~r~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~ 526 (536)
+.-.+...+ .++..+ ..++.+.+... ..++..+.+++...... -+...++|.++-..++.
T Consensus 1306 k~Ss~dq~q-KLie~~l~~~l~k~es~~-siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1306 KFSSPDQMQ-KLIETLLADLLGKDESLK-SISCATISNIANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred hcCChHHHH-HHHHHHHHHHhccCCCcc-chhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence 987665333 344433 34444333222 33444444344332211 14566777666555444
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.2e-16 Score=145.98 Aligned_cols=365 Identities=16% Similarity=0.199 Sum_probs=287.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHhhhh---hHHHHHH-HHHHhhcCcchHHHHHHHHhHHHhhcccCc--hhhhhh
Q 009359 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAAH---LKSEIMS-IFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAH 241 (536)
Q Consensus 168 l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ 241 (536)
+.+.+.|+..+-|++|+.-+..+.+.+-... ....++. ....+....+..-|++++-+++..+-.+|. ..+...
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 4456778888999999999998887654422 2233344 444556666777788888888877766665 347888
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH----H
Q 009359 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----L 315 (536)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~ 315 (536)
++|.+..+++|.+.+||..+|+.+.++++....+. +.+.+...+.++..|++..||.+| .-+..+.+.+-.+ .
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999876654 345788899999999999998754 5555555544222 2
Q ss_pred HHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHH--HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH
Q 009359 316 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (536)
Q Consensus 316 ~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (536)
-.+.++|.+..-+.+.++.+|...+.++..+-..-+.+. +.+.+++.++++|.|+..+||..+-.+++.+...+..+.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 257888999999999999999999999998866544443 458999999999999999999999999999887664322
Q ss_pred H---HhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH--HHHHHHHHHHHhcCcch-HHHHHHHHHHHHHHHHh
Q 009359 394 L---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEF 467 (536)
Q Consensus 394 ~---~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~ 467 (536)
. .+..++.+..-+.+++..++..|+.++..+.+..|+... .+.++..++.++.|+.. .++..+...-+.+.+.+
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 1 256777788888889999999999999999998887663 46677778888888777 58888877777777666
Q ss_pred Chhhhh-----hchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCCccchhhhc
Q 009359 468 GPDWAM-----QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDSESVAVTY 533 (536)
Q Consensus 468 ~~~~~~-----~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~vr~~ 533 (536)
+.+... ..++..+.+.+.+.....|.+++.++..+-...+.+. +...+++.+++.+.|+...|...
T Consensus 324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~ 396 (675)
T KOG0212|consen 324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLL 396 (675)
T ss_pred hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHH
Confidence 544222 4688888899999999999999999999999999886 47789999999999999988654
No 33
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=2e-17 Score=165.25 Aligned_cols=279 Identities=22% Similarity=0.300 Sum_probs=221.8
Q ss_pred hHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC------hH
Q 009359 242 ILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN------PE 314 (536)
Q Consensus 242 l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~------~~ 314 (536)
+++.+..++.. +....|.+++..|..++.....+...+.++|.++.++.|+..+||..|+.++..+...+. ..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 45555555444 345567788888888888887777778889999999999999999999988888876553 22
Q ss_pred HHHHhhhHHHHHhccC-CCHHHHHHHHHHHHHhhhhhCH-------------------------------HHHHHhHHHH
Q 009359 315 LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGK-------------------------------DATIEQLLPI 362 (536)
Q Consensus 315 ~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~-------------------------------~~~~~~l~~~ 362 (536)
.+.+.++|.+..+..| ....||.+.+..|+.++..... ......+-..
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~ 582 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQM 582 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHH
Confidence 5678888999888888 6677888888888877653210 0011223455
Q ss_pred HHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 009359 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (536)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 442 (536)
+..++.|+.+.||.+.++.+..+|..+|.+...+.+++.+.++++|++|+.|.+..+.|..++-.+|.....+.++|++.
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~ 662 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ 662 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence 66678899999999999999999999999998899999999999999999999999999999889999888899999999
Q ss_pred HHhcCcchHHHHHHHHHHHHHHHHhChh-hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHH
Q 009359 443 QWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI 520 (536)
Q Consensus 443 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 520 (536)
+.+.|..+.|-..|++++..+++..--+ ...-+++..+..++-+||.-+|..++..+..+.+.++....+..++|.+.
T Consensus 663 Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~ir 741 (1431)
T KOG1240|consen 663 QGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIR 741 (1431)
T ss_pred HhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhH
Confidence 9999999999999999999998763211 12355677777788899999999999999999999887554444444433
No 34
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.3e-13 Score=141.69 Aligned_cols=403 Identities=16% Similarity=0.165 Sum_probs=272.4
Q ss_pred chHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCC---ChHHHHHHHHHHHHhcC
Q 009359 99 ETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA---PEALKTELRTIYRQLCQ 173 (536)
Q Consensus 99 ~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~---~~~~~~~l~~~l~~ll~ 173 (536)
...-|..|.-.++.++..... +.+...++|.+.+..-||+..++.+...++..+.... .+++.++|++.|...+.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 344577777788888776543 3445567888888888999999999999888887653 34588899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc----------hhhhh
Q 009359 174 DDMPMVRRSAATNLGKFAATVEAAHLKSE---IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----------QDCVA 240 (536)
Q Consensus 174 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~ 240 (536)
+..|+||++++.+|..+...-+.+...+. +...++....|-.+.||.+|-.+...+++.+-. ....+
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence 99999999999999999987555444433 444445556677788999888877766654321 34567
Q ss_pred hhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHH-------------------HH
Q 009359 241 HILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEV-------------------RI 298 (536)
Q Consensus 241 ~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~v-------------------r~ 298 (536)
.++|++.. ..-++-..||..++..+..+++..|... +..+++|.+.+..+..++.| |.
T Consensus 1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~ 1209 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRA 1209 (1702)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence 78998865 3337778999999999999999988743 34578999998887666544 22
Q ss_pred HHHH------hHHHHHhhcChHHHHHhhhHHHHHhcc-CCCHHHHHHHHHHHHHhhhhhCHHH--HHHhHHHHHHHhhCC
Q 009359 299 AAAG------KVTKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKD 369 (536)
Q Consensus 299 ~a~~------~l~~~~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d 369 (536)
.+++ +++.+..+++. ...+.++|.+.++.. .-.-..|.+++..+..++..+|.+. +...++..++..++|
T Consensus 1210 s~aksspmmeTi~~ci~~iD~-~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d 1288 (1702)
T KOG0915|consen 1210 SAAKSSPMMETINKCINYIDI-SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD 1288 (1702)
T ss_pred hhhcCCcHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc
Confidence 2221 22222333322 345777788877664 3345678888999999998888653 568899999999999
Q ss_pred CCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchh--hHHHHHHHHHHHHhcC
Q 009359 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKD 447 (536)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d 447 (536)
.++.+|.+...+++.+.+.-.++...+.+-..+..++.+.+. .+..++..+..|+...... .+.+.++|.++-..++
T Consensus 1289 RNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1289 RNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred ccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhH
Confidence 999999999999999998887776644444444455544332 2244455454454433221 2357789987766665
Q ss_pred cchHHHHHHHHHHHHHHHHhCh--h----hhhhchhH-HHHhhccCCChHHHHHHHHHHHHHhhhhC
Q 009359 448 KVYSIRDAAANNVKRLAEEFGP--D----WAMQHIVP-QVLEMINNPHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 448 ~~~~Vr~~a~~~l~~l~~~~~~--~----~~~~~i~~-~l~~~~~d~~~~~r~~~~~~l~~l~~~~~ 507 (536)
... +-......+...+-+ . .....++. ......++..|.+|..++.++..++....
T Consensus 1368 e~K----a~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1368 EEK----ANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred HHH----HHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccccc
Confidence 421 112222222222211 0 01133333 34445666679999999888888776544
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.8e-15 Score=138.46 Aligned_cols=342 Identities=15% Similarity=0.180 Sum_probs=252.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhc-CcchHHHHHHHHhHHHhhcccCch---
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQ--- 236 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--- 236 (536)
.+.....+.+.++..+..+...+..+...... +.....++|.+...+. +.++.++..|+.+|..++...++.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 34444445555566676676666666543221 2334467888888885 667899999999999998866552
Q ss_pred hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCcH-HHHHHHHHhHHHHHhhcC
Q 009359 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILN 312 (536)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~-~vr~~a~~~l~~~~~~~~ 312 (536)
......+|.+..++.+++..||..++++||+++..-. .......+++.++.++..+.. .....+..++..++..-.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 2345688999999999999999999999999873211 111123467777777766654 567788999999998652
Q ss_pred hH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHH---HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHH
Q 009359 313 PE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (536)
Q Consensus 313 ~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (536)
+. .....++|.+..++.+.+..|..-+++++..+...-.... ....++|.+..+|...+..++..|+.++|++.
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 21 3457889999999999999999999999999986533221 23567899999999999999999999999975
Q ss_pred hhhchh---HHHhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 009359 387 QVIGID---LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANN 459 (536)
Q Consensus 387 ~~~~~~---~~~~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~ 459 (536)
..-... .+....+|.+..++. ++...+|..|++.++.|...-.. ..+...++|.+...++..+..+|+.|+++
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 422211 233567899999988 66777999999999999762211 11335689999999999999999999999
Q ss_pred HHHHHHHhChhhh----hhchhHHHHhhccCCChHHHHHHHHHHHHHhhhh
Q 009359 460 VKRLAEEFGPDWA----MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 506 (536)
Q Consensus 460 l~~l~~~~~~~~~----~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~ 506 (536)
++.++....++.. ...+++.+..++.-+|..+-..++.++..+.+..
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 9998876554432 2568899999988888888888888888876553
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=6.8e-14 Score=131.83 Aligned_cols=341 Identities=15% Similarity=0.163 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc
Q 009359 160 LKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 160 ~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
....++|.+.+++. +.++.+|..|+.+|.+++..-... ......+|.+..++.+++..|++.|+.+|+.++...+.
T Consensus 106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 34567788888775 778999999999999999754331 22345789999999999999999999999999876543
Q ss_pred --h-hhhhhhHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHhCCCcc---ccchHHHHHHhcCCCcHHHHHHHHHhHHHHH
Q 009359 236 --Q-DCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPEPT---RSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 308 (536)
Q Consensus 236 --~-~~~~~l~~~l~~~~~d~~~-~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~ 308 (536)
+ .....+++.+..++..... .....+.++|.+++..-.+... ...++|.+..++.+.|++|..-|+.++..+.
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1 1233456666666655443 5677788999999986533221 3468999999999999999999999999998
Q ss_pred hhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHH---HHHhHHHHHHHhhC-CCCHHHHHHHHHh
Q 009359 309 RILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQLLPIFLSLLK-DEFPDVRLNIISK 381 (536)
Q Consensus 309 ~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~-d~~~~vr~~a~~~ 381 (536)
..-... .+...+.|.+..++...+..++..+++++|.++..-+... .....+|.+..++. .+...+|+.|+..
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 753322 2345677999999999999999999999999876433221 23567899999988 5666799999999
Q ss_pred hHHHHhhhchh-----HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH----HHHHHHHHHHHhcCcchHH
Q 009359 382 LDQVNQVIGID-----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLKDKVYSI 452 (536)
Q Consensus 382 l~~l~~~~~~~-----~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~V 452 (536)
+++++. |.. .+...++|.|...++..+.++|..|+++++.+.....++.. ...+++.+..+|.-.+..+
T Consensus 346 iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i 423 (514)
T KOG0166|consen 346 ISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI 423 (514)
T ss_pred HHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH
Confidence 999976 332 23357899999999999999999999999998765554331 2335666777776666667
Q ss_pred HHHHHHHHHHHHHHhChhhhh-----------hchhHHHHhhccCCChHHHHHHHHHHHHH
Q 009359 453 RDAAANNVKRLAEEFGPDWAM-----------QHIVPQVLEMINNPHYLYRMTILQAISLL 502 (536)
Q Consensus 453 r~~a~~~l~~l~~~~~~~~~~-----------~~i~~~l~~~~~d~~~~~r~~~~~~l~~l 502 (536)
-..++.++..+.+..+..... ..-+..+..+..+.+..+...|...+.+.
T Consensus 424 i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 424 ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHh
Confidence 777777777776653221100 12334444455566767777777766664
No 37
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.8e-12 Score=123.72 Aligned_cols=458 Identities=16% Similarity=0.157 Sum_probs=291.7
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHH-HHHHhhChHhhhhcccccc-ccccCCchHHHHHHHHHHhchhcccCCccchhccc
Q 009359 11 IAVLIDELKNDDIQLRLNSIRRLS-TIARALGEERTRKELIPFL-SENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (536)
Q Consensus 11 i~~l~~~l~s~~~~~R~~a~~~l~-~~~~~~~~~~~~~~l~~~l-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 88 (536)
-..|.+-|.|........|++.+- .++. |.+ -..++|-+ .+....+.+|++..--.|-++++.-+. -.++
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~--G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd----LALL 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAK--GKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD----LALL 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhc--CCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC----ceee
Confidence 345666666777777888887654 4443 222 34455554 448889999999999888888774332 2233
Q ss_pred --hHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHH
Q 009359 89 --PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRT 166 (536)
Q Consensus 89 --~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 166 (536)
..++.-+.|+++.+|..|++++..+-- ..+.+.++-.++++..|+.+.||..|+.+|..++.. +++...++.+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k~qL~e 183 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQKDQLEE 183 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhHHHHHH
Confidence 347788899999999999999877632 345666777788999999999999999999998764 4445559999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhccc-C-c---------
Q 009359 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL-E-P--------- 235 (536)
Q Consensus 167 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~-~--------- 235 (536)
.+..++.|.++-|--+|+-++..+|-.-- .....-...+.+++.|-++.-+.-.+..|..-++.. . +
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evCPerl--dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~ 261 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVCPERL--DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLED 261 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhchhHH--HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 99999999999999999988888763210 111112233444455555545555566665554321 0 0
Q ss_pred --------------------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHH
Q 009359 236 --------------------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 295 (536)
Q Consensus 236 --------------------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~ 295 (536)
+.....++.....++.+.++.|-.++++.+..++.... ...+...+++++..+ ++
T Consensus 262 n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~----~~~i~kaLvrLLrs~-~~ 336 (968)
T KOG1060|consen 262 NGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ----VTKIAKALVRLLRSN-RE 336 (968)
T ss_pred CcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH----HHHHHHHHHHHHhcC-Cc
Confidence 11123355555667888889999999999988875421 235677777777665 58
Q ss_pred HHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhc--cCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHH
Q 009359 296 VRIAAAGKVTKICRILNPELAIQHILPCVKELS--SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD 373 (536)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 373 (536)
+|...++++..++..- + .-..|.++.+. ......++.--++.+..++..-+ ...+++.+...+++.+..
T Consensus 337 vqyvvL~nIa~~s~~~-~----~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn----i~~ILrE~q~YI~s~d~~ 407 (968)
T KOG1060|consen 337 VQYVVLQNIATISIKR-P----TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESN----ISEILRELQTYIKSSDRS 407 (968)
T ss_pred chhhhHHHHHHHHhcc-h----hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc----HHHHHHHHHHHHhcCchh
Confidence 9999999999887631 1 11224444332 12223455555666666654322 356677777777777766
Q ss_pred HHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc-CcchHH
Q 009359 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSI 452 (536)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~V 452 (536)
+-..+++++|..+..++. +.+..+.-|..++++.+..+-..++..|..+.+.-..+. ..++..+.+++. -..+.-
T Consensus 408 faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~A 483 (968)
T KOG1060|consen 408 FAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAA 483 (968)
T ss_pred HHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhh
Confidence 666777777776665543 335566666667777777777777777766665433322 112333333332 123455
Q ss_pred HHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHh
Q 009359 453 RDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (536)
Q Consensus 453 r~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~ 503 (536)
|...++.+|..+..... +...++..+.+-+.++...+|..++....++.
T Consensus 484 RA~IiWLige~~e~vpr--i~PDVLR~laksFs~E~~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 484 RAGIIWLIGEYCEIVPR--IAPDVLRKLAKSFSDEGDEVKLQILNLSAKLY 532 (968)
T ss_pred hceeeeeehhhhhhcch--hchHHHHHHHHhhccccchhhHHHHHhhhhhe
Confidence 66677777777765322 23445555555666777777766666655553
No 38
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.4e-14 Score=124.93 Aligned_cols=341 Identities=18% Similarity=0.144 Sum_probs=239.9
Q ss_pred hccccccccccCCchHHHHHHHHHHhchhcccCCccchhccch---HHHhhhcCcchHHHHHHHHHHHHHHhhcChhhH-
Q 009359 47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP---PLETLCTVEETCVRDKAVESLCRIGSQMREQDV- 122 (536)
Q Consensus 47 ~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~---~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~- 122 (536)
+..-|.+.-+++.++.++.++..++|+++-..+..-..-.+.. ++.++..| ..++|..|+.|+.+++..-+.+..
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhh
Confidence 3444555557788999999999999998766554333333333 56666655 557888999999998876332211
Q ss_pred --HhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh-
Q 009359 123 --VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA- 196 (536)
Q Consensus 123 --~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~- 196 (536)
...+.|+.+ +.+.++..+|..+..++..+...-... +...-+|.+..++...++.||+.|+.+++.++-.-..
T Consensus 164 A~sGaL~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 164 ARSGALEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhccchhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 122455554 777777788888887776653321110 2233468999999999999999999999998742211
Q ss_pred ---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009359 197 ---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (536)
Q Consensus 197 ---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 271 (536)
....+.++|.+..++.|.++.++..|--+|..++..... +.....-+|.+.++++++.-..-.+...++-+++-.
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 123456999999999999999999999999988764332 334456789999999998766666666777666654
Q ss_pred hCCCcc--ccchHHHHHHhcCCC-cHHHHHHHHHhHHHHHhhcCh---HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHH
Q 009359 272 VGPEPT--RSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMG 345 (536)
Q Consensus 272 ~~~~~~--~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~ 345 (536)
-+++.. ...++..++.++.-. +.+++.+|...+-.++..... ..+....+|.+..++.|..-.+|...-.++..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 444432 224777788888643 346999999988888763321 22334567888888899988888877777776
Q ss_pred hhhh--hCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhh
Q 009359 346 MAPI--LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (536)
Q Consensus 346 l~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (536)
++-. .........++|+++.+..+.+.+||..++.++.+++...
T Consensus 403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 6532 2222334568899999999999999999999999987643
No 39
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.4e-13 Score=129.95 Aligned_cols=474 Identities=15% Similarity=0.136 Sum_probs=312.9
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchh
Q 009359 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYAN 85 (536)
Q Consensus 7 ~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 85 (536)
....+..+...+.+.-+..|..|++..-.- ..+|.+ ...+.|=+.. +...+-+..+-.-..+.+.+.. .+...-
T Consensus 11 ~k~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G~D--vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~--~P~~a~ 85 (734)
T KOG1061|consen 11 KKGEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVGKD--VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG--KPDLAI 85 (734)
T ss_pred hhhhchHHHHHhhhhhhhhHHHHHHHHHhc-CccCcc--hHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc--CchHHH
Confidence 345688888999888888899998653221 234432 2344444444 5556677777777777777663 233334
Q ss_pred ccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH-HHHHH
Q 009359 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTEL 164 (536)
Q Consensus 86 ~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l 164 (536)
...+.+..-+.|+++.+|..|++.++.+ ..+.+.+++..-+....+|+++.+|..++.+...+...-++- ....+
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl 161 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGL 161 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccch
Confidence 4445566677899999999999888765 345566777777778888999999999999988887655443 44668
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchh-hhh
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-CVA 240 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~ 240 (536)
.+.+..++.|++|.|-..|..+|..+.+.-.. ......+...++..++.-+..-+ +..+..++...+++. -..
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea~ 238 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREAE 238 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhHH
Confidence 88899999999999999999999999876542 12233344444444444433333 445555555555532 223
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh-----
Q 009359 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP----- 313 (536)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----- 313 (536)
.++..+...+.+.+..|-.++.+.+..+...+.. +.....+-|.+..++.... ++...++..+..+....+.
T Consensus 239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~ 317 (734)
T KOG1061|consen 239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVE 317 (734)
T ss_pred HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhH
Confidence 4555555666777777777777777666665443 1223345566666665554 8888888887776654321
Q ss_pred ---------------------------HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHh
Q 009359 314 ---------------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 366 (536)
Q Consensus 314 ---------------------------~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (536)
+.....++.-+.....+-+...-+.+++++|.++...... ...++.++.+
T Consensus 318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLel 394 (734)
T KOG1061|consen 318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLEL 394 (734)
T ss_pred hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHH
Confidence 1123445555666666777777778888898888665433 5677888888
Q ss_pred hCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh
Q 009359 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (536)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (536)
++-....|-+.++..+..+...+.... +.+.+.+..-..+ .++..|.+.++.++.-+..+.. ...++..+.+-.
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~ 469 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENF 469 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhc
Confidence 876655565666666666665554321 4555555544443 4678999999999998887776 455777788888
Q ss_pred cCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhcc-C-CChHHHHHHHHHHHHHh
Q 009359 446 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-N-PHYLYRMTILQAISLLA 503 (536)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d-~~~~~r~~~~~~l~~l~ 503 (536)
.|+...|+...+.+.-++.-..+. ..++.+..+..... | .++++|..++...--+.
T Consensus 470 ~dE~~~Vql~LLta~ik~Fl~~p~--~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 470 KDETAEVQLELLTAAIKLFLKKPT--ETQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 899999998887777666554443 24566666666533 3 36788888776665554
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.61 E-value=1.1e-11 Score=122.57 Aligned_cols=401 Identities=16% Similarity=0.168 Sum_probs=265.8
Q ss_pred HHHHhcCcccchhhHHHhhhhhhccCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHH
Q 009359 130 VKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMS 205 (536)
Q Consensus 130 l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~ 205 (536)
+....++.+...-..++.++..+....... ..+++.+.+...+.++++.||..+++.++.++..-.. ......+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 444444433333345667777777766655 5788899999999999999999999999988754322 122356889
Q ss_pred HHHHhhcCcchHHHHHHHHhHHHhhcccCc-h-hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccc
Q 009359 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEP-Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSD 280 (536)
Q Consensus 206 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~ 280 (536)
.+...+.|++..|...|+.++..++..-.. + -+.+...+.+.+++...+..+|..+.+.+..++..-... .....
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 999999999999999999999999875332 1 112334778888888778889998999888887542211 11235
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh-H-HHHHhhhHHHHHhc----cCC-CHHHH-HHHHHHHHHhhhhhCH
Q 009359 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-E-LAIQHILPCVKELS----SDS-SQHVR-SALATVIMGMAPILGK 352 (536)
Q Consensus 281 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-~-~~~~~i~~~l~~l~----~d~-~~~vr-~~a~~~l~~l~~~~~~ 352 (536)
+++.++..++++|.-||.+++..+..++..-.. + .....+++.+..++ .|+ ...+. ...+...+.++..-+.
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~ 282 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ 282 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence 889999999999999999999999999873211 1 11233445554443 344 12222 2334566666654222
Q ss_pred HH--HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch-hHH-------HhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009359 353 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLL-------SQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (536)
Q Consensus 353 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~-------~~~i~~~l~~~~~~~~~~~R~~a~~~l~ 422 (536)
.. ..+.++..+..++.+.++..+..|+.++|.++..... ..+ .+.++..+..........+|..++.++.
T Consensus 283 ~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~ 362 (503)
T PF10508_consen 283 EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA 362 (503)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 11 2356777777888899999999999999999854322 111 1234444455555667789999999999
Q ss_pred HHHhhhch---h-------hHHHH-----HHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh------hchhHHHH
Q 009359 423 LLASQLGV---G-------FFDDK-----LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM------QHIVPQVL 481 (536)
Q Consensus 423 ~l~~~~~~---~-------~~~~~-----l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~------~~i~~~l~ 481 (536)
.+...... + .+.+. ....+...++.|-+++|.++...+..++.+ +|.. +.++..+.
T Consensus 363 ~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~---~Wg~~~i~~~~gfie~ll 439 (503)
T PF10508_consen 363 SILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ---PWGQREICSSPGFIEYLL 439 (503)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC---HHHHHHHHhCccHHhhhc
Confidence 98643322 0 01111 111677888999999999999999999865 2322 45666666
Q ss_pred hhccCCChHHHHHHHHHHHHHhhhhC---hHHHHHhHHHHHHhhcCCccchhhhc
Q 009359 482 EMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDSESVAVTY 533 (536)
Q Consensus 482 ~~~~d~~~~~r~~~~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d~~~~vr~~ 533 (536)
+.-.+++...+..=...+..+..... ..+-.++++..+...++.+.-.|+..
T Consensus 440 dr~~E~~K~~ke~K~~ii~~l~~~~~~~~~~~~~~~~~~kL~~yv~eGpy~v~~~ 494 (503)
T PF10508_consen 440 DRSTETTKEGKEAKYDIIKALAKSSTNASSVFDDPEYLGKLQEYVREGPYYVKAE 494 (503)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcccchhhcCCCHHHHHHHHHHHHcCCcccCCc
Confidence 66666677777666666666664333 12223455557778887777666543
No 41
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.5e-10 Score=114.56 Aligned_cols=486 Identities=13% Similarity=0.079 Sum_probs=284.4
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhh---hhccccccccccCCchHHHHHHHHHHhchhcc-cCCccchh
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSENNDDDDEVLLAMAEELGVFIPY-VGGLEYAN 85 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~ 85 (536)
.|+.|+.++++.|..+|++|.++++.+...++++-. ...++.++.... ++.....++-+|+.++.. +-.+....
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e--~~~aWHgacLaLAELA~rGlLlps~l~ 419 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE--DDSAWHGACLALAELALRGLLLPSLLE 419 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC--chhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 478899999999999999999999999988875422 233333322222 455666788888877651 11233455
Q ss_pred ccchHHHhhhc--------CcchHHHHHHHHHHHHHHhhcChhhHHhh----HHHHHHHHhcCcccchhhHHHhhhhhhc
Q 009359 86 VLLPPLETLCT--------VEETCVRDKAVESLCRIGSQMREQDVVEH----FIPLVKRLAAGEWFTARVSSCGLFHVAY 153 (536)
Q Consensus 86 ~ll~~l~~l~~--------~~~~~vr~~a~~~l~~~~~~~~~~~~~~~----l~~~l~~l~~~~~~~~r~~a~~~l~~~~ 153 (536)
.++|++..-+. +.-..||++|+-.+..+....++....+. ...++....-|+.-..|.+|..++.+..
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 66776554332 22457999999999999998887655542 2234556667888889998888887776
Q ss_pred cCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcCcchHHHHHHHHhHHHhhc
Q 009359 154 PSAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEE-LTQDDQDSVRLLAVEGCGALGK 231 (536)
Q Consensus 154 ~~~~~~-~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~ 231 (536)
.+.+.. .--. +....+.-+-..|..+-..+......++ .+...+++.+.. -+.+=+..+|..+..+|..+..
T Consensus 500 GR~~n~p~Gi~----Lis~~dy~sV~~rsNcy~~l~~~ia~~~--~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 500 GRQGNFPHGIS----LISTIDYFSVTNRSNCYLDLCVSIAEFS--GYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred ccCCCCCCchh----hhhhcchhhhhhhhhHHHHHhHHHHhhh--hHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 664331 1101 1111222233345555555555444332 333333333222 2445577899999999999776
Q ss_pred ccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-----ccc-------chHHH-HHHhcC-CCcHHHH
Q 009359 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----TRS-------DVVPA-YVRLLR-DNEAEVR 297 (536)
Q Consensus 232 ~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~-----~~~-------~l~~~-l~~ll~-d~~~~vr 297 (536)
..++ ...+..+|.+......++...|..+..+.+.+...+..-. ..+ ++++. +...+. ....-.|
T Consensus 574 ~~pk-~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr 652 (1133)
T KOG1943|consen 574 TEPK-YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMR 652 (1133)
T ss_pred hhHH-hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHH
Confidence 5554 2344566666666666778888887777777664432111 001 11222 222111 1113456
Q ss_pred HHHHHhHHHHHhhcC---hHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC--HHHHHHhHHHHHHHhhCC-CC
Q 009359 298 IAAAGKVTKICRILN---PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKD-EF 371 (536)
Q Consensus 298 ~~a~~~l~~~~~~~~---~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d-~~ 371 (536)
.+.++.+..+...-. .+.+.+.--..+.+...+++ .+|.++..+++.++..+- .+.....++...+..+.+ .+
T Consensus 653 ~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~ 731 (1133)
T KOG1943|consen 653 QATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSE 731 (1133)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchH
Confidence 666666666654211 12222222233334445566 899999999999887542 222222343444444444 46
Q ss_pred HHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhhchhh---HHHHHHHHHHHHh--
Q 009359 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWL-- 445 (536)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l-- 445 (536)
..+|.....+++.+...+-.-.+.+.+...+....... ...-|+..+.++..+....+... -.+++...+++.+
T Consensus 732 ~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 732 ERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDD 811 (1133)
T ss_pred HHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 77888877777776543322233344544444444433 45679999999998888777222 1233444444444
Q ss_pred --cC----cchHHHHHHHHHHHHHHHHhC-hhhhhhch----hHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009359 446 --KD----KVYSIRDAAANNVKRLAEEFG-PDWAMQHI----VPQVLEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 446 --~d----~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~i----~~~l~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
.| --..||++|..++..+...+. ++...+.. +..+.+-.-++-...|..++.++.++...
T Consensus 812 Yttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 812 YTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred cccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 33 345799999999999887765 33333333 33333333344455699999999887654
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.50 E-value=1e-10 Score=115.71 Aligned_cols=366 Identities=16% Similarity=0.141 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH----HHHHHHHHHHHhcCCCC
Q 009359 101 CVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDM 176 (536)
Q Consensus 101 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~ll~d~~ 176 (536)
+.-..++..|..+.....+....+.+.+.+.....++++.+|..++..++.+....... ....+++.+..++.|++
T Consensus 53 e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc
Confidence 33356667777777766666666666777777777777777777777766665544331 23568888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc--h-hhhhhhHHHHHHhcC
Q 009359 177 PMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--Q-DCVAHILPVIVNFSQ 251 (536)
Q Consensus 177 ~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~~ 251 (536)
..|...|+++|..+++.-... .+.+.+.+.+..++...++.+|..+.+.+..++..-++ + .....+++.+...++
T Consensus 133 ~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~ 212 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD 212 (503)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc
Confidence 999999999999998643221 11233377788888777888999999988888765443 1 112348888888888
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHH------HHHHHhHHHHHhhcChHHH---HHhh
Q 009359 252 DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVR------IAAAGKVTKICRILNPELA---IQHI 320 (536)
Q Consensus 252 d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr------~~a~~~l~~~~~~~~~~~~---~~~i 320 (536)
+++.-+|..+++.++.++..-..-. ....+++.+...+.+...+-| -+.++.++.+... .+..+ .+.+
T Consensus 213 ~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~ 291 (503)
T PF10508_consen 213 SDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAF 291 (503)
T ss_pred CccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHH
Confidence 8889999999999999987321111 123567777777654322211 2233444455443 23222 2455
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHH--------HhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch-
Q 009359 321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--------EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI- 391 (536)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~- 391 (536)
+..+..+.++.+...+..|++++|.++......... ..++..+.........++|..++.+++.+......
T Consensus 292 ~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~ 371 (503)
T PF10508_consen 292 LERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR 371 (503)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC
Confidence 556667777888999999999999998654322221 34455555556677778999999999999643332
Q ss_pred ----------hHH---HhhHHH-HHHHhhcCCChHHHHHHHHHHHHHHhhh-chhhH--HHHHHHHHHHHhcCcchHHHH
Q 009359 392 ----------DLL---SQSLLP-AIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFF--DDKLGALCMQWLKDKVYSIRD 454 (536)
Q Consensus 392 ----------~~~---~~~i~~-~l~~~~~~~~~~~R~~a~~~l~~l~~~~-~~~~~--~~~l~~~l~~~l~d~~~~Vr~ 454 (536)
.++ .+.-.. .+..+++.|-..+|.++...+..++..- |...+ .+.++..++..-.+.+...+.
T Consensus 372 ~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke 451 (503)
T PF10508_consen 372 QDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKE 451 (503)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHH
Confidence 111 111112 6677788888999999999999987642 33222 133555555555667777877
Q ss_pred HHHHHHHHHHHHh
Q 009359 455 AAANNVKRLAEEF 467 (536)
Q Consensus 455 ~a~~~l~~l~~~~ 467 (536)
+=..++..+.+..
T Consensus 452 ~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 452 AKYDIIKALAKSS 464 (503)
T ss_pred HHHHHHHHHHhcc
Confidence 7777777777543
No 43
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.45 E-value=8.9e-11 Score=111.57 Aligned_cols=277 Identities=23% Similarity=0.286 Sum_probs=192.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhh
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 242 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (536)
...+.+...+.|+++.+|..++..++.+.. ...+|.+...+.|.++.+|..|+.+++.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 345667788888899999999999877654 4678889999999999999999998887764 345
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc------------HHHHHHHHHhHHHHHh
Q 009359 243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE------------AEVRIAAAGKVTKICR 309 (536)
Q Consensus 243 ~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~------------~~vr~~a~~~l~~~~~ 309 (536)
++.+..+++ |.++.||..++..|+.+.. ...+..+...+.|.. ..+|.++..+++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~--------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGD--------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCc--------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 566666555 7899999999999988763 233555666666644 3577777777777754
Q ss_pred hcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhh
Q 009359 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (536)
Q Consensus 310 ~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (536)
+...+.+...+.+.+..+|..++.+++.+.... ..+.+.+...+.|+++.+|..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 344466666777888888888888888876432 3556777888888888888888888777653
Q ss_pred chhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh
Q 009359 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 390 ~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
+...+.+...+.+.++.++.....+.... ......+.+...+.|....+|..+...++.+...
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--- 305 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGAL--------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQE--- 305 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhccc--------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhccc---
Confidence 45556666777777777776665555411 1112234455667778888888888888777543
Q ss_pred hhhhhchhHHHHhhccCCChHHHHHHHHHHHH
Q 009359 470 DWAMQHIVPQVLEMINNPHYLYRMTILQAISL 501 (536)
Q Consensus 470 ~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~ 501 (536)
...........+.+..+|..+......
T Consensus 306 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 306 -----KAVAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred -----chHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 223333344555566666665555443
No 44
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=5.3e-12 Score=111.34 Aligned_cols=343 Identities=15% Similarity=0.160 Sum_probs=244.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhh-
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLK---SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC- 238 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~- 238 (536)
+....+..+++++++.++.++..++|+++-..+..... .-+-+.+.+++.|.. ++|..++.++..++.+-+....
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhccccchhhh
Confidence 34455667788899999999999999998766553222 223456777777654 6788888999888876332111
Q ss_pred -hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH-
Q 009359 239 -VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE- 314 (536)
Q Consensus 239 -~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~- 314 (536)
....+..+.++.+.++.+||..+..+|.++........ ....-+|+++++++..+++||..+..+++.++-.-...
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 22345556668888899999999999988876544321 23356899999999999999999999999886422111
Q ss_pred ---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC--HHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhh
Q 009359 315 ---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (536)
Q Consensus 315 ---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (536)
...+.++|.+.++..|++.+++..+..+++.++..-. .+.....-+|.+.++++++.-..-.+...|+..+.-.=
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 1124588999999999999999999999999986432 22333456899999999887655555555665554322
Q ss_pred chhHH--HhhHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 009359 390 GIDLL--SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 463 (536)
Q Consensus 390 ~~~~~--~~~i~~~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (536)
+++.. ...++..+..++.-+ +..++..|...+-.++..... .++....+|.+..++.|..-.||.....|+..+
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 22211 134555566776654 456888899888888764332 223455688889999999999999999998888
Q ss_pred HHHhCh--hhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhh
Q 009359 464 AEEFGP--DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 506 (536)
Q Consensus 464 ~~~~~~--~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~ 506 (536)
...-.. .+....++|.|..+..+.+..+|-++..++.+++...
T Consensus 404 al~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 404 ALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 754322 2334678999999999999999999999999887654
No 45
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.2e-09 Score=106.49 Aligned_cols=426 Identities=14% Similarity=0.140 Sum_probs=247.3
Q ss_pred ccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc
Q 009359 56 NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAA 135 (536)
Q Consensus 56 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 135 (536)
+++++..|...|.-++++++ .++....+.|....+++..++.||++|+.|..++....+. ..+.+.+...++..
T Consensus 116 L~s~nq~vVglAL~alg~i~----s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNIC----SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLC 189 (866)
T ss_pred ccCCCeeehHHHHHHhhccC----CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHh
Confidence 55666666666666777763 3667788889999999999999999999999998886643 55566777777778
Q ss_pred CcccchhhHHHhhhhhhccCCChH--HHHHH----HHHHHHhcCC-----------CChHHHHHHHHHHHHHHHHHhhhh
Q 009359 136 GEWFTARVSSCGLFHVAYPSAPEA--LKTEL----RTIYRQLCQD-----------DMPMVRRSAATNLGKFAATVEAAH 198 (536)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~~--~~~~l----~~~l~~ll~d-----------~~~~vr~~a~~~l~~~~~~~~~~~ 198 (536)
+++..+-.++..++..++...++. +...+ +..|.++... ++|..+...++.|+-+++.-. .
T Consensus 190 ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--d 267 (866)
T KOG1062|consen 190 EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--D 267 (866)
T ss_pred hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--c
Confidence 888888888888888887775553 33334 3444444321 467788888888877765422 2
Q ss_pred hHHHHHHHHHHhhcCc--ch----HHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 009359 199 LKSEIMSIFEELTQDD--QD----SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (536)
Q Consensus 199 ~~~~l~~~l~~~l~d~--~~----~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~ 272 (536)
..+....++-+..... +. .+-. ++..++....+........+..+-+.+.+++-++|..+.+.|..+...-
T Consensus 268 aSd~M~DiLaqvatntdsskN~GnAILY---E~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d 344 (866)
T KOG1062|consen 268 ASDLMNDILAQVATNTDSSKNAGNAILY---ECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQD 344 (866)
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHH---HHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCC
Confidence 2222333333333221 11 2222 2333333333333344445556666666666677777777777665431
Q ss_pred CCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH
Q 009359 273 GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352 (536)
Q Consensus 273 ~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 352 (536)
.. ...+=-..++.+++|+++.+|..|++-...+...-.-....++++..+ ...+...|...+..+..+++.+.+
T Consensus 345 ~~--avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL----~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 345 PT--AVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFL----ESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred cH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHhcCC
Confidence 11 122335678889999999999999998888876433333334444433 444677888888888888877765
Q ss_pred HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhh-chhH--HHhhHHHHHHHh--hcCCChHHHHHHHHHHHHHHhh
Q 009359 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL--LSQSLLPAIVEL--AEDRHWRVRLAIIEYIPLLASQ 427 (536)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~--~~~~i~~~l~~~--~~~~~~~~R~~a~~~l~~l~~~ 427 (536)
+.. =.+..+...+...-..|+..+..++-.++..- +... ....+.-.+... ..-.....-+.+.++|+.-+..
T Consensus 419 ~k~--W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdl 496 (866)
T KOG1062|consen 419 DKR--WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDL 496 (866)
T ss_pred cch--hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHH
Confidence 321 12233333333333344444444444443322 2110 001111111110 1112233466788888877632
Q ss_pred hch--------hhHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHH
Q 009359 428 LGV--------GFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQ 497 (536)
Q Consensus 428 ~~~--------~~~~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~ 497 (536)
+-. ..-.+.++..+.+.+. ..+..++..|+.++-++...++.. .+++-..+..+...-+..+++.+.+
T Consensus 497 ll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 497 LLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred hhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHH
Confidence 211 1123445555555443 223678888999998888776553 3445555555555667777777766
Q ss_pred HHHHH
Q 009359 498 AISLL 502 (536)
Q Consensus 498 ~l~~l 502 (536)
.=.-+
T Consensus 575 ~~~l~ 579 (866)
T KOG1062|consen 575 YNALF 579 (866)
T ss_pred HHHHH
Confidence 54433
No 46
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=9.2e-10 Score=106.82 Aligned_cols=462 Identities=15% Similarity=0.084 Sum_probs=297.2
Q ss_pred CCCCCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCCcc
Q 009359 3 MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE 82 (536)
Q Consensus 3 ~~~~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 82 (536)
-+++-..-+.....++.+.|.++|+=.--.|-+.|..- |+-..-.+-.|-..+.|+++.+|..|.+.|..+- -+-
T Consensus 65 ~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq-pdLALLSIntfQk~L~DpN~LiRasALRvlSsIR----vp~ 139 (968)
T KOG1060|consen 65 KGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ-PDLALLSINTFQKALKDPNQLIRASALRVLSSIR----VPM 139 (968)
T ss_pred cCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC-CCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhh
Confidence 34443344666677778888887776555555554422 1111112222333488999999999998887651 122
Q ss_pred chhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHH
Q 009359 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKT 162 (536)
Q Consensus 83 ~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~ 162 (536)
..+.++--+.....|+.+.||+.|.-++.++-..-+. ....+...+..+..|..+.|--+|+..+..+++.--+ ...
T Consensus 140 IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e--~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld-LIH 216 (968)
T KOG1060|consen 140 IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE--QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD-LIH 216 (968)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH-Hhh
Confidence 2333333466778899999999999999888764332 2337888999999999888888888887777653211 122
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh-------------------------------hhhHHHHHHHHHHhh
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-------------------------------AHLKSEIMSIFEELT 211 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-------------------------------~~~~~~l~~~l~~~l 211 (536)
.-+..+++++-|-+..=+...+..|..++...-+ +.-...++.....++
T Consensus 217 knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl 296 (968)
T KOG1060|consen 217 KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL 296 (968)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence 2234455666666555566777777777654211 111234566666678
Q ss_pred cCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc--
Q 009359 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-- 289 (536)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll-- 289 (536)
.+.++.|-.+++...-.++... ....+...+..++..+ ..+|..+.+++..++..-+ .-+.|.+.++.
T Consensus 297 ~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-----~lF~P~lKsFfv~ 366 (968)
T KOG1060|consen 297 QSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-----TLFEPHLKSFFVR 366 (968)
T ss_pred hcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch-----hhhhhhhhceEee
Confidence 8888888888888777666422 2445666666666653 5688888888888875311 12345555443
Q ss_pred -CCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC
Q 009359 290 -RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 368 (536)
Q Consensus 290 -~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (536)
+|+ ..++..-+.-|..++. +.-...|++-+.....+.+.++-..++++||..+...+. +.+..+..++.++.
T Consensus 367 ssDp-~~vk~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Lls 439 (968)
T KOG1060|consen 367 SSDP-TQVKILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLS 439 (968)
T ss_pred cCCH-HHHHHHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHh
Confidence 343 2444444444555543 222367778888888888888999999999999886653 45678888999999
Q ss_pred CCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcC
Q 009359 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD 447 (536)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 447 (536)
..+..|-..++..+..+...-..+. ..++..+.+++..- -..-|...++.++..+..... ..+.++..+.+-+.|
T Consensus 440 shde~Vv~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpr--i~PDVLR~laksFs~ 515 (968)
T KOG1060|consen 440 SHDELVVAEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR--IAPDVLRKLAKSFSD 515 (968)
T ss_pred cccchhHHHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch--hchHHHHHHHHhhcc
Confidence 9888888888888888876433322 24555566665433 366788888888887765332 245566667777889
Q ss_pred cchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhc-cCCChHHHHHH
Q 009359 448 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI-NNPHYLYRMTI 495 (536)
Q Consensus 448 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~~r~~~ 495 (536)
+...||...+....++...-.. ....+...+.++. .|++|++|..+
T Consensus 516 E~~evKlQILnL~aKLyl~~~~--~~kll~~Yv~~L~~yD~sYDiRDRa 562 (968)
T KOG1060|consen 516 EGDEVKLQILNLSAKLYLTNID--QTKLLVQYVFELARYDLSYDIRDRA 562 (968)
T ss_pred ccchhhHHHHHhhhhheEechh--hHHHHHHHHHHHhccCCCcchhHHH
Confidence 9999999998888777543222 1344555555553 37788877655
No 47
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.41 E-value=3.4e-10 Score=105.88 Aligned_cols=294 Identities=13% Similarity=0.110 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhh
Q 009359 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238 (536)
Q Consensus 159 ~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (536)
+...++.|.|...++|.-..|...+++++..++...-.+.+.+..+..+..+++...-..|-+|+..+..++...+..
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-- 337 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-- 337 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--
Confidence 366788999999999998999999999999988665345556677788888999999999999999999999877653
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHH
Q 009359 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (536)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (536)
+...-+-+..+.+|.+ |..+..++..+.+. |.+...+.++..+.+++.|-+...+..++.++..++..++.++ .
T Consensus 338 v~vcN~evEsLIsd~N---r~IstyAITtLLKT-Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~ 411 (898)
T COG5240 338 VSVCNKEVESLISDEN---RTISTYAITTLLKT-GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--L 411 (898)
T ss_pred eeecChhHHHHhhccc---ccchHHHHHHHHHc-CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--H
Confidence 3334456667777776 44455556666554 6666677788888888888777788888899998888777664 2
Q ss_pred hhhHHHHH-hccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhh
Q 009359 319 HILPCVKE-LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (536)
Q Consensus 319 ~i~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (536)
.++..+.. +.+......+..++.++..+.+..+. ..+..+..+...+.|.... +.+...|+-+++......-...
T Consensus 412 s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~ 487 (898)
T COG5240 412 SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGK 487 (898)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcch
Confidence 33344432 33456678888888888888765432 2345666677777665431 2333444444332211111122
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 009359 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (536)
Q Consensus 398 i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (536)
.+..+...+-=.+..+|.+|+.++..++-.....+..+.+...+.++++|.+.+||..|.-++..+-
T Consensus 488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 488 YVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 3333333333346789999999999999888877778888888999999999999999988887764
No 48
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.5e-10 Score=107.59 Aligned_cols=291 Identities=19% Similarity=0.149 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc----
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---- 235 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---- 235 (536)
..+.+...+..+.+|.++.||..|++++-.+.+.+ .....+.....+.+.|.+..||.+|++.+..+++..+-
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34556666888999999999999999998887733 33355677788899999999999999999999988731
Q ss_pred ----hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHH-hcCC-CcHHH---HHHHHHhHHH
Q 009359 236 ----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR-LLRD-NEAEV---RIAAAGKVTK 306 (536)
Q Consensus 236 ----~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-ll~d-~~~~v---r~~a~~~l~~ 306 (536)
....+..+..+.....|.+|.||..+++.||.+... ..+. +...+-+ ++++ ..+.. |-.+...=+.
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~----i~QTLdKKlms~lRRkr~ahkrpk~l~s~Ge 346 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEI----IQQTLDKKLMSRLRRKRTAHKRPKALYSSGE 346 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHH----HHHHHHHHHhhhhhhhhhcccchHHHHhcCC
Confidence 244567888889999999999999999999988654 1111 1111211 2221 00000 0111111111
Q ss_pred HHh------hcChHHH---HHhh-----hHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCH
Q 009359 307 ICR------ILNPELA---IQHI-----LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP 372 (536)
Q Consensus 307 ~~~------~~~~~~~---~~~i-----~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 372 (536)
+.. ..+.+.. ...| ...+..-++|+-..||.+|+..++.++..-+ .|....+..+..+++|+..
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~FA~~aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP--GFAVRALDFLVDMFNDEIE 424 (823)
T ss_pred cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccHHH
Confidence 111 0011110 1122 2345566788889999999999999986432 3556778889999999999
Q ss_pred HHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchh---hHHHHHHHHHHHHhcCcc
Q 009359 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKV 449 (536)
Q Consensus 373 ~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~ 449 (536)
.||..|+.+|..+...+. +.+..++.+.+.+.|.+..+|+++-..+... .....+ .....++..+-++=+|
T Consensus 425 ~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~~lL~~L~kyPqD-- 498 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLECIDMCVAHLLKNLGKYPQD-- 498 (823)
T ss_pred HHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhhCCCC--
Confidence 999999999999987643 4578889999999999999999988877542 111111 1234445555555455
Q ss_pred hHHHHHHHHHHHHHHHHhCh
Q 009359 450 YSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 450 ~~Vr~~a~~~l~~l~~~~~~ 469 (536)
|.....|++.+.++.+.
T Consensus 499 ---rd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 499 ---RDEILRCMGRIGQNHRR 515 (823)
T ss_pred ---cHHHHHHHHHHhccChh
Confidence 44567777777776544
No 49
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.37 E-value=3.6e-11 Score=105.20 Aligned_cols=305 Identities=14% Similarity=0.102 Sum_probs=211.8
Q ss_pred HHHHHHHHHhhc-CcchHHHHHHHHhHHHhhcccCchh---hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---C
Q 009359 201 SEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQD---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---G 273 (536)
Q Consensus 201 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~ 273 (536)
.-.+|.+.+++. .+.+-.+..|..++..++...+.+. .....+|.+.+++.+.+..||..+.++||+++.-- .
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 346788888884 4455677889999999988766532 23568999999999999999999999999987321 1
Q ss_pred CCccccchHHHHHHhcCCCcH--HHHHHHHHhHHHHHhhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhh
Q 009359 274 PEPTRSDVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (536)
Q Consensus 274 ~~~~~~~l~~~l~~ll~d~~~--~vr~~a~~~l~~~~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 348 (536)
........+..++.++..+-. .+-..+...++.++..-.++ ......+|.+.+++...++.+-.-|+++++.+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 111112345555665554433 45567788888888754322 2346778999999999999999999999999876
Q ss_pred hhCHHH---HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchh---HHHhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009359 349 ILGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (536)
Q Consensus 349 ~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~ 422 (536)
.-.... ...-+.+.++.+|.+++..+..-++..+|++...-... .+.-..++.+..+++++..++|..+++.++
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 322111 11234567888899988888888888888875422111 122456788888899999999999999999
Q ss_pred HHHhhhchh---hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh-h-h----hhhchhHHHHhhccCCChHHHH
Q 009359 423 LLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-D-W----AMQHIVPQVLEMINNPHYLYRM 493 (536)
Q Consensus 423 ~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~-~----~~~~i~~~l~~~~~d~~~~~r~ 493 (536)
.+...-... .....+.|.+..++..-...+|+.|++++......... + . ..+.++..|..++.-.+..+-+
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie 432 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE 432 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence 885422111 12345889999999998999999999999887665321 1 1 1245566666666655555666
Q ss_pred HHHHHHHHHhhh
Q 009359 494 TILQAISLLAPV 505 (536)
Q Consensus 494 ~~~~~l~~l~~~ 505 (536)
.++.++..+...
T Consensus 433 v~LD~~eniLk~ 444 (526)
T COG5064 433 VALDAIENILKV 444 (526)
T ss_pred hhHHHHHHHHhh
Confidence 667888777654
No 50
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.36 E-value=9.5e-09 Score=96.48 Aligned_cols=295 Identities=12% Similarity=0.084 Sum_probs=207.6
Q ss_pred hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 009359 197 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (536)
Q Consensus 197 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~ 276 (536)
..+...+.|.+...++|.-+.|...+++++-.++...-..++....+..+..+++......|.+|.+.|.+++...+...
T Consensus 259 ~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 259 SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 35567788999999999888899999988888775542234567777888888998888899999999999998755432
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHH
Q 009359 277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 356 (536)
Q Consensus 277 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 356 (536)
. ..=+-+.++++|.+.. .+..|+..+.+. |.+.-.+.++..+..+..|-+...+..++.++..++-.++.+.
T Consensus 339 ~--vcN~evEsLIsd~Nr~---IstyAITtLLKT-Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~-- 410 (898)
T COG5240 339 S--VCNKEVESLISDENRT---ISTYAITTLLKT-GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK-- 410 (898)
T ss_pred e--ecChhHHHHhhccccc---chHHHHHHHHHc-CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--
Confidence 1 2235566778887744 455555555544 4444446677777777777776777778888888887776542
Q ss_pred HhHHHHHHHhhCC-CCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHH
Q 009359 357 EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 435 (536)
Q Consensus 357 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~ 435 (536)
...+..+...|.+ ...+.+..++.++..+++.... ..+..+..+.++.+|-.+. +.++..++.+++..+...-..
T Consensus 411 ~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~ 486 (898)
T COG5240 411 LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPG 486 (898)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcc
Confidence 2334444444444 4568888899988888876533 3467788888888876543 455566666655433221122
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHh
Q 009359 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (536)
Q Consensus 436 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~ 503 (536)
..+.-+...+-=++.-||.+|..+|.+++-+....+..+.+...|.++++|.|..+|..|..++..+-
T Consensus 487 ~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 22223333333356779999999999999887777777889999999999999999999998888764
No 51
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.9e-08 Score=101.42 Aligned_cols=428 Identities=14% Similarity=0.085 Sum_probs=260.2
Q ss_pred hccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccC--CChHHHH
Q 009359 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS--APEALKT 162 (536)
Q Consensus 85 ~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~--~~~~~~~ 162 (536)
+.++..+...++|.+..||-.|++.++.+...++.+-..+.+-..+.-+..-+....=..++-+++.+... ..+....
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~ 419 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE 419 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 45555666677899999999999999999999986544444444444222112233344788888887654 3445667
Q ss_pred HHHHHHHHhcC--------CCChHHHHHHHHHHHHHHHHHhhhh---hHHHHHH-HHHHhhcCcchHHHHHHHHhHHHhh
Q 009359 163 ELRTIYRQLCQ--------DDMPMVRRSAATNLGKFAATVEAAH---LKSEIMS-IFEELTQDDQDSVRLLAVEGCGALG 230 (536)
Q Consensus 163 ~l~~~l~~ll~--------d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~~l~ 230 (536)
++.|.+...+. .....||.+|+..+=.++....+.. +.+.+.+ .+...+-|.+-..|.+|..++-...
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 78887776653 2356799999999999988766643 3333444 3445677999999988887765433
Q ss_pred cccCc-----h-------------------------hhhhhhHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 009359 231 KLLEP-----Q-------------------------DCVAHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGPEP 276 (536)
Q Consensus 231 ~~~~~-----~-------------------------~~~~~l~~~l~~~----~~d~~~~vR~~~~~~l~~l~~~~~~~~ 276 (536)
...+. + .+....-|.+..+ +.+-+..+|..++.+|.++...-++..
T Consensus 500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~ 579 (1133)
T KOG1943|consen 500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL 579 (1133)
T ss_pred ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh
Confidence 22111 0 0111122222223 445577899999999999887644433
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH----------HH--HHhhhHHHHHhccCCC--HHHHHHHHHH
Q 009359 277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----------LA--IQHILPCVKELSSDSS--QHVRSALATV 342 (536)
Q Consensus 277 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----------~~--~~~i~~~l~~l~~d~~--~~vr~~a~~~ 342 (536)
....+|.++......+...|..+..+.+.+...+..- .+ ...+++.+.....+.. .-.|.+.+..
T Consensus 580 -a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~ 658 (1133)
T KOG1943|consen 580 -ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKF 658 (1133)
T ss_pred -cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHH
Confidence 3455666666666667888988888888776532110 01 1123333332222222 3456666666
Q ss_pred HHHhhhhh---CHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhh--chhHHHhhH-HHHHHHhhcCCChHHHHH
Q 009359 343 IMGMAPIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQSL-LPAIVELAEDRHWRVRLA 416 (536)
Q Consensus 343 l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~i-~~~l~~~~~~~~~~~R~~ 416 (536)
+..+...- -.+.+......++.+.+.+++ .+|..+..+++.++..+ +++.....+ ...|..+.+..+..+|..
T Consensus 659 Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g 737 (1133)
T KOG1943|consen 659 IEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRG 737 (1133)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 66654321 123444555556666665666 89999999999998654 222222324 344444445557888888
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHhChh-------hhhhchhHHHHhhccCC-
Q 009359 417 IIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPD-------WAMQHIVPQVLEMINNP- 487 (536)
Q Consensus 417 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~-------~~~~~i~~~l~~~~~d~- 487 (536)
...+++.+....-...+.+.+...++... .|..+.-|...+.++..+++..+.. ...+.++..+.++..|.
T Consensus 738 ~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~r 817 (1133)
T KOG1943|consen 738 LILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSR 817 (1133)
T ss_pred HHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccC
Confidence 77777665432222223344444444333 3547788999999999998887721 22345555666665554
Q ss_pred ---ChHHHHHHHHHHHHHhhhhC-hHHHHHh
Q 009359 488 ---HYLYRMTILQAISLLAPVMG-SEITCSQ 514 (536)
Q Consensus 488 ---~~~~r~~~~~~l~~l~~~~~-~~~~~~~ 514 (536)
-.-||..|..++..+...+. ++++.++
T Consensus 818 GDVGswVReaAm~al~~~~~~l~~p~~ld~~ 848 (1133)
T KOG1943|consen 818 GDVGSWVREAAMKALSSLLDTLSSPKLLDED 848 (1133)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhcCcccccHH
Confidence 34599999999999876665 4444333
No 52
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=6.1e-08 Score=99.05 Aligned_cols=474 Identities=16% Similarity=0.117 Sum_probs=294.2
Q ss_pred hhhHHHHHHhhChHhhhhcccccccc---cc-CCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHH
Q 009359 30 IRRLSTIARALGEERTRKELIPFLSE---NN-DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDK 105 (536)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~l~~~l~~---~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~ 105 (536)
++.+..+...+|+ ....++.|-|.. +. +++...+...-.++|..+..+| ++..-.++|+= +..+.....|..
T Consensus 371 lqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmG-Pe~vL~~lpLn--l~~~s~~~~RsW 446 (1176)
T KOG1248|consen 371 LQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMG-PERVLTILPLN--LHAESLSFTRSW 446 (1176)
T ss_pred HHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhC-HHHHHHHcchh--ccccccccchhH
Confidence 3445555556665 334556666554 12 2333344456666776666666 44444455541 123334456666
Q ss_pred HHHHHHHHHhhcChhhHHhhHHHHHHHHhc------Ccccc---hhhHHHhhhhhhccCCC---h-H-HHHHHHHHHHHh
Q 009359 106 AVESLCRIGSQMREQDVVEHFIPLVKRLAA------GEWFT---ARVSSCGLFHVAYPSAP---E-A-LKTELRTIYRQL 171 (536)
Q Consensus 106 a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~------~~~~~---~r~~a~~~l~~~~~~~~---~-~-~~~~l~~~l~~l 171 (536)
-+..|.......+-..+.++++|+...+.. ..... .+....+++..+-..+. + + ....+.+.+...
T Consensus 447 LLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~a 526 (1176)
T KOG1248|consen 447 LLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAA 526 (1176)
T ss_pred hHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHH
Confidence 677777776666666777888888755432 11112 23334444444333222 1 1 356677777666
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHhhcCcc------hHHHHHHHHhHH-Hhhccc
Q 009359 172 CQDDMPMVRRSAATNLGKFAATVEA-----------AHLKSEIMSIFEELTQDDQ------DSVRLLAVEGCG-ALGKLL 233 (536)
Q Consensus 172 l~d~~~~vr~~a~~~l~~~~~~~~~-----------~~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~-~l~~~~ 233 (536)
+.-. ++.|...+.+|..+.....+ ..+...++|.+++..+..- ...|..-++... .....
T Consensus 527 l~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~- 604 (1176)
T KOG1248|consen 527 LLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTV- 604 (1176)
T ss_pred Hhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhc-
Confidence 6443 48999999999998876411 2334557787777765432 233444444443 22222
Q ss_pred CchhhhhhhHHHHHHhcCCCCHHHHH----HHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHh
Q 009359 234 EPQDCVAHILPVIVNFSQDKSWRVRY----MVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (536)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~~~~vR~----~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 309 (536)
.+.+....+...+.....+.+..++. .....+..++....... ...+....-...+..+..++.-+..-|..++.
T Consensus 605 t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~ 683 (1176)
T KOG1248|consen 605 TPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEELSS 683 (1176)
T ss_pred ccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHHhc
Confidence 22334455555666666665444433 33333333333322222 22233222233345578899999999999888
Q ss_pred hcChH----HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHH--HHHhHHHHHHHhhCCCCHHHHHHHHHhhH
Q 009359 310 ILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (536)
Q Consensus 310 ~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (536)
...-+ .....+...+.+-.++.....|...+.++..+.+..+.+. +....+|.++-.+++.+..-|+.++.+|.
T Consensus 684 ~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~ 763 (1176)
T KOG1248|consen 684 SPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLV 763 (1176)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHH
Confidence 62211 2345666777777777788899999999999998887543 44666676666679999999999999998
Q ss_pred HHHh--h---hchhH---HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh---chhhHHHHHHHHHHHHhcCcchHH
Q 009359 384 QVNQ--V---IGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSI 452 (536)
Q Consensus 384 ~l~~--~---~~~~~---~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~V 452 (536)
.++. . .|.+. ..+.+++.|...+-....+++..-+-++..+.... ..+.+...++..+.-++..+.+.|
T Consensus 764 ~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI 843 (1176)
T KOG1248|consen 764 FIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREI 843 (1176)
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHH
Confidence 8883 2 23322 34556666666655455555554466666665533 234456778888888999999999
Q ss_pred HHHHHHHHHHHHHHhChhhhh---hchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHH
Q 009359 453 RDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 510 (536)
Q Consensus 453 r~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~ 510 (536)
+.+|+..+..++..++..... +.++|.+..+.+|....+|..+-..+..+++.+|.+.
T Consensus 844 ~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 844 AKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 999999999999988765433 6689999999999999999999999999999999765
No 53
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.35 E-value=6.1e-10 Score=105.84 Aligned_cols=275 Identities=24% Similarity=0.246 Sum_probs=193.8
Q ss_pred HHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 009359 127 IPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSI 206 (536)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 206 (536)
.+.+.+...++++.+|..+...++.+. ....++.+..++.|.++.||..|+.+|+.+.. +..+|.
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~-------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a~~~ 109 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGELG-------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEAVPP 109 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhc-------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhHHHH
Confidence 344455556666677777766544332 24567788888899999999999998887653 234455
Q ss_pred HHHhhc-CcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCC------------HHHHHHHHHHHHHHHHHhC
Q 009359 207 FEELTQ-DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKS------------WRVRYMVANQLYELCEAVG 273 (536)
Q Consensus 207 l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~------------~~vR~~~~~~l~~l~~~~~ 273 (536)
+..++. |++..||..+..+|+.+... ..+..+...++|+. +.+|.+++..++.+.
T Consensus 110 li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~---- 177 (335)
T COG1413 110 LVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG---- 177 (335)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC----
Confidence 555555 78889999999999887651 22333334444433 478999988888775
Q ss_pred CCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHH
Q 009359 274 PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 353 (536)
Q Consensus 274 ~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 353 (536)
.+...+.+...+.|.+..||.+|..+++.+.... ..+.+.+.....|+++.+|..++..++.+..
T Consensus 178 ----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~----- 242 (335)
T COG1413 178 ----DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD----- 242 (335)
T ss_pred ----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc-----
Confidence 3456788999999999999999999999997632 2455777788899999999999999998853
Q ss_pred HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH
Q 009359 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (536)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~ 433 (536)
....+.+...+.+.++.++..+...++... .....+.+...+.+..+.+|..+...+..+.....
T Consensus 243 ---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 307 (335)
T COG1413 243 ---EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA---- 307 (335)
T ss_pred ---chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch----
Confidence 345566778888888888877766665211 12334455666778889999999988877654322
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 009359 434 DDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (536)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 462 (536)
.........+....+|..+......
T Consensus 308 ----~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 308 ----VAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred ----HHHHHHHhcCCchhhHHHHHHHHHh
Confidence 2234455667778888877666543
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.3e-08 Score=95.96 Aligned_cols=401 Identities=12% Similarity=0.100 Sum_probs=204.1
Q ss_pred HHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHH
Q 009359 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQ 170 (536)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (536)
+.+-+++.+..|-..|+.+++.++. .+....+.|.+.++.+..++.+|..|+.+...+....++ ..+.+.+....
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s----~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~-l~e~f~~~~~~ 186 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICS----PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD-LVEHFVIAFRK 186 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCC----HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-HHHHhhHHHHH
Confidence 3444455566666666666666653 233344667777777777777777777776666655543 34455666667
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhcC---------------cchHHHHHHHHhHHHhhcccC
Q 009359 171 LCQDDMPMVRRSAATNLGKFAATVEAA-HLKSEIMSIFEELTQD---------------DQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 171 ll~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~ 234 (536)
++.+.++-|-.++...+..+++..+.. .+...+.|-+...+++ ++|..+...+..|.-+++.-.
T Consensus 187 lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 187 LLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred HHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 777777777777766666666643321 1222244443333321 244555555555555554322
Q ss_pred c-hhhhhhhHHHHHHhcCCCCHHHHHHH-HHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC
Q 009359 235 P-QDCVAHILPVIVNFSQDKSWRVRYMV-ANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 312 (536)
Q Consensus 235 ~-~~~~~~l~~~l~~~~~d~~~~vR~~~-~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~ 312 (536)
+ .+....++..+..-.+. +.++-.+. .++...+.....+.......+.++-+++..++..+|.-|+..|....+.-
T Consensus 267 daSd~M~DiLaqvatntds-skN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d- 344 (866)
T KOG1062|consen 267 DASDLMNDILAQVATNTDS-SKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQD- 344 (866)
T ss_pred cHHHHHHHHHHHHHhcccc-cccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCC-
Confidence 2 11112222222111111 11111110 01111111111111111112333334444444445555555554444321
Q ss_pred hHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchh
Q 009359 313 PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (536)
Q Consensus 313 ~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (536)
+ ...+.--..+...++|++..+|+.+++..-.+...-+-. .++..++..|...+++.|...+..+..+...+.++
T Consensus 345 ~-~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~----~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 345 P-TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVR----VMVKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred c-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 1 122334456667789999999999999988887654433 34444555565567788888888888888877664
Q ss_pred --HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHh-hhchhhHHHHHHHHHHHHh-----cCcchHHHHHHHHHHHHHH
Q 009359 393 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS-QLGVGFFDDKLGALCMQWL-----KDKVYSIRDAAANNVKRLA 464 (536)
Q Consensus 393 --~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~~l-----~d~~~~Vr~~a~~~l~~l~ 464 (536)
|..+.++..+ +.-..-+|..++..+-.+.. .++... ............ .-+....-+.|.+|||+..
T Consensus 420 k~W~idtml~Vl----~~aG~~V~~dv~~nll~LIa~~~~e~~-~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 420 KRWHIDTMLKVL----KTAGDFVNDDVVNNLLRLIANAFQELH-EYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred chhHHHHHHHHH----HhcccccchhhHHHHHHHHhcCCcchh-hHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhh
Confidence 3333333333 22222334444443333332 222221 111111111111 1233445788999999988
Q ss_pred HHhCh--------hhhhhchhHHHHhhccC--CChHHHHHHHHHHHHHhhhhCh
Q 009359 465 EEFGP--------DWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGS 508 (536)
Q Consensus 465 ~~~~~--------~~~~~~i~~~l~~~~~d--~~~~~r~~~~~~l~~l~~~~~~ 508 (536)
..+-. ....+.++..+.+++.. .+..++..++.|+-++...++.
T Consensus 495 dlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s 548 (866)
T KOG1062|consen 495 DLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS 548 (866)
T ss_pred HHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc
Confidence 44311 11124566666665443 3578899999999998776654
No 55
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.32 E-value=6.3e-10 Score=105.56 Aligned_cols=240 Identities=16% Similarity=0.068 Sum_probs=157.0
Q ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhh
Q 009359 164 LRTIYRQLC-QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 242 (536)
Q Consensus 164 l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (536)
..+.+...+ .|++..++..++.++..... ...+..+...+.|.++.||..++++|+.+.. ...
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence 445555656 46777887766665543221 1235667777788888888888888876543 456
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhH
Q 009359 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 322 (536)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~ 322 (536)
.+.+...++++++.||.+++..++... ..-.+.+..+++|+++.||..|+.+++.+.. ....+
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence 667777778888888887776666521 1234677777888888888888888888754 33345
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHH
Q 009359 323 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (536)
Q Consensus 323 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l 402 (536)
.+.....|.++.||..++..+..+.. +..++.+.....+....++..+...+... +. +..++.|
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 56666788888888888888876643 12233444434444444444444343333 22 3667777
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 009359 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (536)
Q Consensus 403 ~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (536)
..++.++. +|..++.+++.+. ....++.+...+.|+. +|..|.+++..|.
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg--------~p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVG--------DVEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcC--------CcchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 77777765 7888888887653 2235666777777654 8888888888776
No 56
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.1e-10 Score=107.87 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=156.5
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC--------
Q 009359 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG-------- 351 (536)
Q Consensus 280 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-------- 351 (536)
.+...+..+..|.++.||.+|+.++-.+.+.+ + +...+.......+.|.+..||.+|++.+..+++..+
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--k-L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGF--K-LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccc--c-ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 45565778889999999999999998887732 2 224445566677889999999999998888877652
Q ss_pred HHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHh-hc-CCChHHHH---HHHHHHHHHHh
Q 009359 352 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AE-DRHWRVRL---AIIEYIPLLAS 426 (536)
Q Consensus 352 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~-~~-~~~~~~R~---~a~~~l~~l~~ 426 (536)
.....+..+.-+...+.|.+..||..|++.+|.+...- .+ .+...|.+- +. +..|+... ..+..=+.+..
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee----~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EE----IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HH----HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 11234566777888899999999999999999886532 11 111222111 11 11121111 11111111110
Q ss_pred --hhch----hhH---HHHHH-----HHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHH
Q 009359 427 --QLGV----GFF---DDKLG-----ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR 492 (536)
Q Consensus 427 --~~~~----~~~---~~~l~-----~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r 492 (536)
..+. +.. ...++ ..+...+.|+..+||.+|..+++.++..-. .+....+..|.++++|+...||
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~FA~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP--GFAVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccHHHHHH
Confidence 0000 000 01122 236667788888888888888888876432 2346677888888888888888
Q ss_pred HHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccchhhhccC
Q 009359 493 MTILQAISLLAPVMGSEITCSQLLPVVINASKDSESVAVTYSH 535 (536)
Q Consensus 493 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~ 535 (536)
..++.++..++..+. ..+..++.++..+.|...+||+..|
T Consensus 428 L~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~ 467 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALR 467 (823)
T ss_pred HHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888877632 4566788888888888888887543
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.30 E-value=1.1e-09 Score=103.94 Aligned_cols=242 Identities=15% Similarity=0.068 Sum_probs=177.5
Q ss_pred HHHHHHHHhh-cCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc
Q 009359 202 EIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 280 (536)
Q Consensus 202 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 280 (536)
..++.+...+ .|++..++..++.++..... ...+..+...+.|.+..||.+++++|+.+. ...
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~ 117 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQ 117 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chH
Confidence 3556666666 57778888877766653321 224778888899999999999999998764 356
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHH
Q 009359 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360 (536)
Q Consensus 281 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 360 (536)
..+.+..++++.++.||.+++.+++.... + -.+.+..+++|+++.||..++.+++.+.. ....
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~~----~-----~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~ 180 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHRH----D-----PGPALEAALTHEDALVRAAALRALGELPR--------RLSE 180 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcc----C-----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccch
Confidence 78889999999999999999977777432 1 12455566679999999999999999864 2455
Q ss_pred HHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 009359 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440 (536)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~ 440 (536)
|.+...+.|.++.||..|+.++..+.. +...+.+..+..++.+..+..+...+... +. +..++.
T Consensus 181 ~~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~ 244 (410)
T TIGR02270 181 STLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAW 244 (410)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHH
Confidence 667788999999999999999977653 23344555545555555555444444332 22 256677
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 441 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
+..+++|+. ||..++.++|.+. ....++.|.+.+.|+. ++-.+.+++..|..
T Consensus 245 L~~ll~d~~--vr~~a~~AlG~lg--------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 245 LRELLQAAA--TRREALRAVGLVG--------DVEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHhcChh--hHHHHHHHHHHcC--------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 888888865 9999999999875 2467888888887755 89999999998865
No 58
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.29 E-value=1.3e-07 Score=94.59 Aligned_cols=473 Identities=14% Similarity=0.094 Sum_probs=258.8
Q ss_pred HHHHHHH-hcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccc
Q 009359 11 IAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (536)
Q Consensus 11 i~~l~~~-l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 88 (536)
++.+-.+ +.+.+...|..|++.+-.. ...|.+ ...+.|.+.. +...+.++++-.-..+..+++.-+ +..-..+
T Consensus 20 ~~~~~sg~l~s~n~~~kidAmK~iIa~-M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLav 94 (757)
T COG5096 20 VAALSSGRLESSNDYKKIDAMKKIIAQ-MSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLAV 94 (757)
T ss_pred HhhhccccccccChHHHHHHHHHHHHH-HhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHHH
Confidence 4555566 7888889999999875332 123422 4666676655 558889999988888888876443 2222223
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHH-HHHH
Q 009359 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTE-LRTI 167 (536)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~-l~~~ 167 (536)
+.+..-++|+++.+|..|++.++.+ ..+.+...+++.++++.+|+++.||..|+.++..++..-...+... ....
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~ 170 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI 170 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence 4566677899999999999998876 4567788899999999999999999999999999987655555555 6778
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-cCcc---hHHHHHHHHhHHHhhcccCchhhhhhhH
Q 009359 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-QDDQ---DSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (536)
Q Consensus 168 l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~d~~---~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (536)
+..++.|++|.|-.+|..+|..+... ....+...+...+.++. .+.+ +.++..-.+.+..-....+.+ ...+.
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e-~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s--~~~~~ 247 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE-LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDS--AEDFE 247 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh-hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCc--HHHHH
Confidence 88899999999999999999887654 11222222222222211 0111 233333333333222221111 11111
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHH
Q 009359 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (536)
Q Consensus 244 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~ 323 (536)
..+.-...+.+..+-..++..+..+...+..........|.+..++..+ +......+.-...+.-...+..+ +..+..
T Consensus 248 ~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l~~~~k~~-~~~~~~ 325 (757)
T COG5096 248 ERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP-ESLIQYVLRRNIQIDLEVCSKLL-DKVKKL 325 (757)
T ss_pred HhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC-HHHHHHHHHHhhHHHHHhhHHHH-HHHhhh
Confidence 1222233455677777777777777766665554445667777776655 33444333333322211111111 111111
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCC--CCHHHHHHHHHhhHHHHhhhchhHHHhhHHHH
Q 009359 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (536)
Q Consensus 324 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 401 (536)
... -.+.+..+..........++.. +. ...+++.+.....+ .++++-..++++++.+.... +.....++..
T Consensus 326 f~~-~~~~~i~~~lek~~~~t~l~~~---~n-~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~--~s~~~~~I~~ 398 (757)
T COG5096 326 FLI-EYNDDIYIKLEKLDQLTRLADD---QN-LSQILLELIYYIAENHIDAEMVSEAIKALGDLASKA--ESSVNDCISE 398 (757)
T ss_pred hhh-hccchHHHHHHHHHHHhhcCCc---hh-hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhh--hhhHHHHHHH
Confidence 111 1122222222222222222211 11 12255555555555 66777777888888887655 1222445555
Q ss_pred HHHhhc---CCChHHHHHH-----HHHH----HHHHhhhch--hhHHHHHHHHHHHHhc--CcchHHHHHH-----HHHH
Q 009359 402 IVELAE---DRHWRVRLAI-----IEYI----PLLASQLGV--GFFDDKLGALCMQWLK--DKVYSIRDAA-----ANNV 460 (536)
Q Consensus 402 l~~~~~---~~~~~~R~~a-----~~~l----~~l~~~~~~--~~~~~~l~~~l~~~l~--d~~~~Vr~~a-----~~~l 460 (536)
+.++++ -..|-+-..+ +..+ ..+-..-++ +.+.+.+.- +...+. +..|.++.++ ++.+
T Consensus 399 ~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~-~~e~l~~~~~~P~~k~~~~~~~~~wl~ 477 (757)
T COG5096 399 LLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYA-LEETLELQSREPRAKSVTDKYLGAWLL 477 (757)
T ss_pred HHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHH-HHHHhhccccCcHHHHHHhhhhHHHhH
Confidence 555655 1111111111 1111 111111111 112222111 222232 4457778777 7778
Q ss_pred HHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhC
Q 009359 461 KRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 461 ~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~ 507 (536)
|+++.....- .+..+.......-+....++........++.-...
T Consensus 478 ge~~~~i~r~--~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~ 522 (757)
T COG5096 478 GEFSDIIPRL--EPELLRIAISNFVDETLEVQYTILMSSVKLIANSI 522 (757)
T ss_pred HHHHHHHhhh--hHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCc
Confidence 8877654321 12333333444556677788777777766654444
No 59
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.28 E-value=3.3e-10 Score=99.28 Aligned_cols=302 Identities=16% Similarity=0.153 Sum_probs=200.8
Q ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-hh-
Q 009359 164 LRTIYRQLC-QDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QD- 237 (536)
Q Consensus 164 l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~- 237 (536)
+.|.+.+++ +......+-.|+.+|.+++..-... ......+|.+.+++.+.+..||..++.+|+.++...+. .+
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~ 194 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY 194 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence 456666666 3344456668999999988754332 12234789999999999999999999999998754332 11
Q ss_pred -hhhhhHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc
Q 009359 238 -CVAHILPVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (536)
Q Consensus 238 -~~~~l~~~l~~~~~d~~--~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~ 311 (536)
.....+..+..++.+.. -..-..+-+.|.+++..-.+.. ...+.+|.+.+++...+++|-.-|+.+++-++..-
T Consensus 195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence 12234444444444332 3444556789999987543322 23468999999999999999999999999887632
Q ss_pred ChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHH---HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHH
Q 009359 312 NPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (536)
Q Consensus 312 ~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (536)
... .+...+.+.+..++.+++..+..-+++.+|.+...-..+. ..--.++.+..+|.++...+|+.++.++.++
T Consensus 275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 111 1223445678888899999999999999999876433221 1233567777778899889999999999988
Q ss_pred Hhhhchh---HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh-chhhHH-----HHHHHHHHHHhcCcchHHHHHH
Q 009359 386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFD-----DKLGALCMQWLKDKVYSIRDAA 456 (536)
Q Consensus 386 ~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~-~~~~~~-----~~l~~~l~~~l~d~~~~Vr~~a 456 (536)
...-... .+...++|.+..+++.-++.+|..|++++....... +..... +..+..+..+|.-.+..|-+.+
T Consensus 355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~ 434 (526)
T COG5064 355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA 434 (526)
T ss_pred ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence 5422111 123567899999999999999999999998765432 211111 2233445555543333344555
Q ss_pred HHHHHHHHH
Q 009359 457 ANNVKRLAE 465 (536)
Q Consensus 457 ~~~l~~l~~ 465 (536)
+.++..+.+
T Consensus 435 LD~~eniLk 443 (526)
T COG5064 435 LDAIENILK 443 (526)
T ss_pred HHHHHHHHh
Confidence 666655554
No 60
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=6.3e-08 Score=100.91 Aligned_cols=480 Identities=13% Similarity=0.108 Sum_probs=258.5
Q ss_pred HHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccchH
Q 009359 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPP 90 (536)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 90 (536)
..++..+..+-+.+|..|++.|+.++..-+.--.++.+..-+.. +.|....||.+|.+.+|+++-.. ++........
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~--~e~~~qyY~~ 896 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI--PELIFQYYDQ 896 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc--HHHHHHHHHH
Confidence 44567788888999999999999997644333344555555555 88999999999999999886533 3344444455
Q ss_pred HHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH-----------
Q 009359 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----------- 159 (536)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----------- 159 (536)
+..-..|+.-.||+.+++.+..++...+.-.....+...+..-.+|+...+...+...+..++-.-.+.
T Consensus 897 i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI 976 (1692)
T KOG1020|consen 897 IIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKI 976 (1692)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhh
Confidence 555667899999999999999999987653222333333333334443334444444443332111000
Q ss_pred ----------------HH----------------------------HHHHHHHHHhc------------CCCChHHHHH-
Q 009359 160 ----------------LK----------------------------TELRTIYRQLC------------QDDMPMVRRS- 182 (536)
Q Consensus 160 ----------------~~----------------------------~~l~~~l~~ll------------~d~~~~vr~~- 182 (536)
.. ...+..+.+++ .+++.++|..
T Consensus 977 ~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~ 1056 (1692)
T KOG1020|consen 977 SLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLA 1056 (1692)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHH
Confidence 00 01111111111 1112222222
Q ss_pred HHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHH
Q 009359 183 AATNLGKFAATVEA---AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWR 256 (536)
Q Consensus 183 a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~ 256 (536)
.+..|..|++..+. ..+...+.|++..-+.. ++..+-...+..+..+...... +.+...+-..+.+.+-..+-.
T Consensus 1057 ~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a 1136 (1692)
T KOG1020|consen 1057 YLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMA 1136 (1692)
T ss_pred HHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchH
Confidence 22333333332221 12333444444433221 2234444455555554444332 333333434444443333344
Q ss_pred HHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcC-------CC----cHHHHHHHHHhHHHHHhhcC--------h---
Q 009359 257 VRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLR-------DN----EAEVRIAAAGKVTKICRILN--------P--- 313 (536)
Q Consensus 257 vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~ll~-------d~----~~~vr~~a~~~l~~~~~~~~--------~--- 313 (536)
.-..+..+++.++...-... ...+++..+.+.+. ++ ....-...+-.+|.++.+.. +
T Consensus 1137 ~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~ 1216 (1692)
T KOG1020|consen 1137 TVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFL 1216 (1692)
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccch
Confidence 44456667777765422211 12233333333331 11 11122334556666666432 1
Q ss_pred ---HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHH--HHHHHhhHHHHhh
Q 009359 314 ---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVR--LNIISKLDQVNQV 388 (536)
Q Consensus 314 ---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr--~~a~~~l~~l~~~ 388 (536)
....+.++.++.-+..+.+-.+|..|+..+|.++-.-+.-...+.+...+...+.|.+.... ..+..++..+..
T Consensus 1217 ~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~- 1295 (1692)
T KOG1020|consen 1217 QEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLL- 1295 (1692)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH-
Confidence 13345666666667778888899999999999988777666677888888888887655433 333333322221
Q ss_pred hchhHHHhhHHHHHHHhh-cCCChHHHHHHH--HHHHHHHhhhch----hhHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 009359 389 IGIDLLSQSLLPAIVELA-EDRHWRVRLAII--EYIPLLASQLGV----GFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (536)
Q Consensus 389 ~~~~~~~~~i~~~l~~~~-~~~~~~~R~~a~--~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (536)
.+ =..+- ++.+|..-.... .-+.......|. ....+.+++.++...-|.+..+|..|++.+.
T Consensus 1296 --ee---------e~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~ 1364 (1692)
T KOG1020|consen 1296 --EE---------EKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLK 1364 (1692)
T ss_pred --HH---------HHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 11 11111 122332111111 111111111111 1234566777777777888899999999887
Q ss_pred HHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhC
Q 009359 462 RLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 462 ~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~ 507 (536)
-+... |- .-+-..+|.|.-+.+||....|..|...+..+-+..+
T Consensus 1365 liL~Q-GL-VhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~ 1408 (1692)
T KOG1020|consen 1365 LILNQ-GL-VHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYE 1408 (1692)
T ss_pred HHHHc-cC-CCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhH
Confidence 77654 21 1135678888888889888888888888888766544
No 61
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.8e-09 Score=105.42 Aligned_cols=480 Identities=14% Similarity=0.108 Sum_probs=274.1
Q ss_pred CCCCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhh-ccccccccccCCchHHHHHHHHHHhchhcccCCcc
Q 009359 4 IDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRK-ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE 82 (536)
Q Consensus 4 ~~~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~-~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 82 (536)
|+.+..-+..++.--.+++|.+|.-|++.++.+. -+...+ ..-|...-+.|+++.||+.++.+..++-..-+...
T Consensus 81 P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~ 156 (734)
T KOG1061|consen 81 PDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV 156 (734)
T ss_pred chHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc
Confidence 4455556677777788888888888888776552 122222 33355445788889999988888887766544444
Q ss_pred chhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH--H
Q 009359 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--L 160 (536)
Q Consensus 83 ~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~ 160 (536)
+..-+++.|..++.|.++.|-..|+.++..+.+.-+.........+.+.++...-+...-+.-+.++..+....+++ .
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e 236 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE 236 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh
Confidence 56667778888888888888888888888888765432222233333333333322233334445555555554443 4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhh
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (536)
...+...+...++..++.|-..+.+.+-.+...... ..+...+-|.+..++..+. ++...++..+.-+....+. .+
T Consensus 237 a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~ 314 (734)
T KOG1061|consen 237 AEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-IL 314 (734)
T ss_pred HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HH
Confidence 456777777777788888888888888877776654 3334445555555555544 7777777777666654443 11
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHH
Q 009359 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (536)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (536)
...+.-++.+ .+|+ -.|+..=.+++..++.. ....++++-+...-.+-+.+.-..++++++.++...... +
T Consensus 315 ~~~~~~Ff~k-ynDP-iYvK~eKleil~~la~~----~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~ 385 (734)
T KOG1061|consen 315 KVEIKVFFCK-YNDP-IYVKLEKLEILIELAND----ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---N 385 (734)
T ss_pred HhHhHeeeee-cCCc-hhhHHHHHHHHHHHhhH----hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---h
Confidence 1111111111 1232 33555555555555432 112346666666777777777788888888887654433 4
Q ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCC-CCHHHHHHHHHhhHHHHhhhchhHHHhh
Q 009359 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (536)
Q Consensus 319 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (536)
..+..+..+++-+-..+...++..+..+....+.. .+.+.+.+...+.. .+|+.|.+.+..+|.....+... ..
T Consensus 386 ~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~--~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~e 460 (734)
T KOG1061|consen 386 DCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK--YESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LE 460 (734)
T ss_pred hhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc--hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HH
Confidence 55566666665444444455555555555444322 13445554444443 35678888888888877766542 45
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHhChhhhhhch
Q 009359 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDWAMQHI 476 (536)
Q Consensus 398 i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~i 476 (536)
++..+.+-..|....++...+.+.-.+.-..+. ...+.+...+.-..+|. ++++|..++--..-+. -++....+.+
T Consensus 461 lL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs--~~~~~a~~v~ 537 (734)
T KOG1061|consen 461 LLESFLENFKDETAEVQLELLTAAIKLFLKKPT-ETQELLQGVLPLATADTDNPDLRDRGLIYWRLLS--EDPLIAKDVV 537 (734)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhhhccccChhhhhhHHHHHHHhh--cCHHHHHHHH
Confidence 566666666666666766666655544332222 12222333333344443 4578887765554444 2322221111
Q ss_pred h---HHHHhhccC-CChHHHHHHHHHHHHHhhhhC
Q 009359 477 V---PQVLEMINN-PHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 477 ~---~~l~~~~~d-~~~~~r~~~~~~l~~l~~~~~ 507 (536)
. |.+. ...+ .++.+-.....-+++++..+.
T Consensus 538 ~~~kP~is-~~~~~~~p~~le~l~~~i~tlssVY~ 571 (734)
T KOG1061|consen 538 LAEKPLIS-EETDSLDPTLLEELLCDIGTLSSVYH 571 (734)
T ss_pred hcCCCccc-cCCCCCCchHHHHHHHhhccccceee
Confidence 1 2222 2223 455566666666666665543
No 62
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.3e-07 Score=89.72 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=169.2
Q ss_pred hcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCC
Q 009359 95 CTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQD 174 (536)
Q Consensus 95 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d 174 (536)
.++.+..--..|+.+|..++.. +...-+-+-+..+.+...+.+|..|..++..++-.-++ .....+|.|.+-+.|
T Consensus 118 l~S~n~ye~giAL~GLS~fvTp----dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~~FprL~EkLeD 192 (877)
T KOG1059|consen 118 LNSSNVYEVGLALSGLSCIVTP----DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRPCFPRLVEKLED 192 (877)
T ss_pred hccCccchhhheecccccccCc----hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhhhHHHHHHhccC
Confidence 3444444345566666665542 23333455566667777788999888877776554433 445678899999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCc-chHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCC
Q 009359 175 DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK 253 (536)
Q Consensus 175 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~ 253 (536)
+||.|..+|...+..++...+... =.+-|.+.+++.+. |..+-...++.++.+...=+ .....++|.+.++..+.
T Consensus 193 pDp~V~SAAV~VICELArKnPkny--L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP--RLgKKLieplt~li~sT 268 (877)
T KOG1059|consen 193 PDPSVVSAAVSVICELARKNPQNY--LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP--RLGKKLIEPITELMEST 268 (877)
T ss_pred CCchHHHHHHHHHHHHHhhCCccc--ccccHHHHHHHhccCCCeehHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhh
Confidence 999999999999999998765432 23567777776543 33355555666666654322 24566888888887654
Q ss_pred CHHHHHHHHHHHHHHHHH---hCC-Cc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHh
Q 009359 254 SWRVRYMVANQLYELCEA---VGP-EP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL 327 (536)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~---~~~-~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l 327 (536)
+. ..-..+++..+... .|- +. ...-.+.-+-.++.|.++..+.-++-+++.+.+..... ...--..+...
T Consensus 269 ~A--mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrc 344 (877)
T KOG1059|consen 269 VA--MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRC 344 (877)
T ss_pred HH--HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHH
Confidence 32 12222333322221 121 11 11224555667789999999999999999998864332 23344566777
Q ss_pred ccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC-CCCHHHHHHHHHhhHHHHh
Q 009359 328 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 328 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~ 387 (536)
+.|.+..+|..|+..+..+...-+ . ..++..++..+. .+....|...+..+-.+|.
T Consensus 345 L~DkD~SIRlrALdLl~gmVskkN---l-~eIVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 345 LDDKDESIRLRALDLLYGMVSKKN---L-MEIVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred hccCCchhHHHHHHHHHHHhhhhh---H-HHHHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 899999999999998888765322 1 223333333332 2333566655555444443
No 63
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.9e-07 Score=91.26 Aligned_cols=456 Identities=12% Similarity=0.093 Sum_probs=236.0
Q ss_pred hhccccccccccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhh---hcCcchHHHHHHHHHHHHHHhhcChhhH
Q 009359 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETL---CTVEETCVRDKAVESLCRIGSQMREQDV 122 (536)
Q Consensus 46 ~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l---~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 122 (536)
.+.++....-.++.++..|+.....++.+... ....+-....+ ....++..|-.|+++|..+...---.
T Consensus 63 te~ff~~tKlfQskd~~LRr~vYl~Ikels~i------sedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~-- 134 (865)
T KOG1078|consen 63 TELFFAITKLFQSKDVSLRRMVYLAIKELSKI------SEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQ-- 134 (865)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHhhcccc------chhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhH--
Confidence 34444443346777888888877777766331 11222222333 34456778888999888886643222
Q ss_pred HhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHH
Q 009359 123 VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSE 202 (536)
Q Consensus 123 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 202 (536)
.+-.++++..-|+++.++-++..---.+ -....+..........+...+.+..+++-|.-.|..+-+.-. .....
T Consensus 135 --~iery~kqaivd~~~avSsaalvss~hl-l~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr--la~sk 209 (865)
T KOG1078|consen 135 --AIERYMKQAIVDKNPAVSSAALVSSYHL-LPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR--LAVSK 209 (865)
T ss_pred --HHHHHHHhHeeccccccchHHHHHHhhh-hcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH--HHHHH
Confidence 2334455555566655555443211111 223334555556666666667777788777777766654211 11122
Q ss_pred HHHHHHH-hhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 009359 203 IMSIFEE-LTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 281 (536)
Q Consensus 203 l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 281 (536)
++..+.. .+.++- -+..-+.........- +.....+.+++..++.++...|-..++.++..+....+.+.. ..
T Consensus 210 lv~~~~~~~~~~~~--A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pa 283 (865)
T KOG1078|consen 210 LVQKFTRGSLKSPL--AVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PA 283 (865)
T ss_pred HHHHHccccccchh--HHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hH
Confidence 2222221 122221 1111111111111111 223456788888899999888888888888777654443322 25
Q ss_pred HHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHH
Q 009359 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 361 (536)
Q Consensus 282 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 361 (536)
+..+..+++.+.+..|-+|...|.+++...+... ...=.-+..+.+|.|..+-..|+..+-.- |.+.....++.
T Consensus 284 vs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~cN~elE~lItd~NrsIat~AITtLLKT----G~e~sv~rLm~ 357 (865)
T KOG1078|consen 284 VSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVCNLDLESLITDSNRSIATLAITTLLKT----GTESSVDRLMK 357 (865)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cccchhHHhhhcccccchhHHHHHHHHHh----cchhHHHHHHH
Confidence 6677788889999999999999999887654321 11112345566777766655555544433 33333444444
Q ss_pred HHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 009359 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440 (536)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~ 440 (536)
.+-.+..|-+.+-+..+..++..++..+...+ ..+++.+..++.+ +....+.+.+.++..+++..... ....+.-
T Consensus 358 qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~ 433 (865)
T KOG1078|consen 358 QISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEH 433 (865)
T ss_pred HHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHH
Confidence 44444444333333444455555555444332 3455666665543 44667777777777666533221 1122222
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHH
Q 009359 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI 520 (536)
Q Consensus 441 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 520 (536)
+..++.|.. .+.-+...++.+.+...........+..+.+...=.+..+|..|..++.+++ .+.+...+.+.-.+.
T Consensus 434 LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllk 509 (865)
T KOG1078|consen 434 LCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLK 509 (865)
T ss_pred HHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHH
Confidence 333333322 2222333333333322211112333333333333345566666666666666 333444556666666
Q ss_pred hhcCCccchhhhcc
Q 009359 521 NASKDSESVAVTYS 534 (536)
Q Consensus 521 ~~l~d~~~~vr~~a 534 (536)
+|+.|.+..||+-|
T Consensus 510 Rc~~D~DdevRdrA 523 (865)
T KOG1078|consen 510 RCLNDSDDEVRDRA 523 (865)
T ss_pred HHhcCchHHHHHHH
Confidence 66666666666543
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.17 E-value=3.8e-09 Score=94.35 Aligned_cols=194 Identities=20% Similarity=0.162 Sum_probs=130.2
Q ss_pred cchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHH
Q 009359 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRT 166 (536)
Q Consensus 87 ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 166 (536)
+...|..-..+.+...|..++..+..++....+....+.+.+.+ ..+..
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l-------------------------------~~~~~ 56 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECL-------------------------------RQLLD 56 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHH-------------------------------H---H
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHH-------------------------------HHhHH
Confidence 33444444456677888888888877766441111112222222 12345
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhh-H
Q 009359 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI-L 243 (536)
Q Consensus 167 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l-~ 243 (536)
.+...+.|....|...|+.++..++..++.. .+.+.++|.+.+.+.|.+..+|..|..++..+.+.++ +...+ .
T Consensus 57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~ 133 (228)
T PF12348_consen 57 AIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILL 133 (228)
T ss_dssp HHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHH
Confidence 5667777878889999999999999998873 5678899999999999999999999999999999777 12334 7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCc-c----ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH
Q 009359 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP-T----RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (536)
Q Consensus 244 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~--~~~-~----~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (536)
+.+....+++++.+|..++.++..+....+ ... . .+.+.+.+..++.|.+++||.+|-.++..+.+.+|..
T Consensus 134 ~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 134 EILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 888889999999999999999999988877 111 1 2458899999999999999999999999998877665
No 65
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3.1e-06 Score=85.37 Aligned_cols=148 Identities=12% Similarity=0.101 Sum_probs=101.0
Q ss_pred HHHHhhHHHHhhhchhHHHhhHHHHHHHhhc------C--CChHHHHHHHHHHHHHHhhhchhh-----HHHHHHHHHHH
Q 009359 377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAE------D--RHWRVRLAIIEYIPLLASQLGVGF-----FDDKLGALCMQ 443 (536)
Q Consensus 377 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~------~--~~~~~R~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~ 443 (536)
+|...+-.++..-|++.+ +.+++.+...+. . .+.+-+..|+.+++.++..+.++. +...+.+-++.
T Consensus 391 Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 566667777766666665 667777777665 2 356777899999999997665432 23345555666
Q ss_pred HhcCcchHHHHHHHHHHHHHH-HHhChhhhhhchhHHHHhhcc-CCChHHHHHHHHHHHHHhhhhChH--HHHHhH---H
Q 009359 444 WLKDKVYSIRDAAANNVKRLA-EEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE--ITCSQL---L 516 (536)
Q Consensus 444 ~l~d~~~~Vr~~a~~~l~~l~-~~~~~~~~~~~i~~~l~~~~~-d~~~~~r~~~~~~l~~l~~~~~~~--~~~~~~---~ 516 (536)
.++++.--.|..|++.++.++ ..+........++....+.+. |++..||..|.-|+..+....... .+.+++ +
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m 549 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM 549 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence 678898999999999999998 444444344556666666555 889999999999999987765532 234444 4
Q ss_pred HHHHhhcCC
Q 009359 517 PVVINASKD 525 (536)
Q Consensus 517 ~~l~~~l~d 525 (536)
..++++.++
T Consensus 550 q~lL~L~ne 558 (1010)
T KOG1991|consen 550 QELLKLSNE 558 (1010)
T ss_pred HHHHHHHHh
Confidence 444444443
No 66
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.15 E-value=7.7e-09 Score=92.34 Aligned_cols=186 Identities=20% Similarity=0.251 Sum_probs=125.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH----HH---HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHH-
Q 009359 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD- 353 (536)
Q Consensus 282 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~---~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~- 353 (536)
.+.|.+--++.+|+.|..++..+..++....+. .+ ...+++.+...++|....+-..++.++..++..++..
T Consensus 9 ~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 9 LAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF 88 (228)
T ss_dssp -TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Confidence 333433345666777777777766666544111 11 1223345555666777778888999999998877754
Q ss_pred -HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhH-HHHHHHhhcCCChHHHHHHHHHHHHHHhhhc--
Q 009359 354 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL-LPAIVELAEDRHWRVRLAIIEYIPLLASQLG-- 429 (536)
Q Consensus 354 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i-~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-- 429 (536)
.+.+.++|.++..+.|....+|..|..++..++...+. ...+ .+.+....+++++.+|..++.++..+....+
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 35678999999999999999999999999999987761 1334 7888888999999999999999999988877
Q ss_pred hhh-----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh
Q 009359 430 VGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (536)
Q Consensus 430 ~~~-----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (536)
... ..+.+.+.+.+++.|+++.||..|-.++..+.+.+|..
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 111 23668999999999999999999999999999988764
No 67
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=4.2e-08 Score=95.74 Aligned_cols=289 Identities=13% Similarity=0.111 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhh
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV 239 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 239 (536)
...++++.+..++.+....|-..|+.++..+....+.+. ...+..+.-+++.+....|-+|+.+|..++...+.. +
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~--v 317 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA--V 317 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc--c
Confidence 345688888889999999999999998888766544321 124556667888889999999999999998766542 2
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHh
Q 009359 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH 319 (536)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (536)
...-.-+..+.+|.+ |..+.-++..+.+. |.+...+.++..+.....|-+.+-+..+..++..++..++.++ ..
T Consensus 318 ~~cN~elE~lItd~N---rsIat~AITtLLKT-G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~ 391 (865)
T KOG1078|consen 318 TVCNLDLESLITDSN---RSIATLAITTLLKT-GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TV 391 (865)
T ss_pred cccchhHHhhhcccc---cchhHHHHHHHHHh-cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HH
Confidence 233344556667765 44444445555444 5555566677777777766666667777777777777666553 34
Q ss_pred hhHHHHHhc-cCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhH
Q 009359 320 ILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (536)
Q Consensus 320 i~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 398 (536)
+++.+..++ ++....-+.+.++++..++...+.. ....+..+...+.|.. .+.-+...++-++............
T Consensus 392 ~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Psky 467 (865)
T KOG1078|consen 392 MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKY 467 (865)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchh
Confidence 455554444 3455777888888888877643321 2233444444554442 2334444444444322111111222
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 009359 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (536)
Q Consensus 399 ~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (536)
+..+....-=.+..+|.+|+.++..++ .+.....+.+...+.+++.|++..||..|--.+..+-
T Consensus 468 ir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 468 IRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 333333333346779999999999887 4455556667778889999999999999988887776
No 68
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.11 E-value=8.2e-10 Score=106.69 Aligned_cols=255 Identities=18% Similarity=0.175 Sum_probs=203.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccC
Q 009359 251 QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD 330 (536)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d 330 (536)
.-++..-|......|......+.++.....++|.++..+.-.+ --...+.-+-.+.+.+..+.+...++|.+.++...
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~ 341 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS 341 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence 3355666777777777777777776666778888887765332 11222333444555555566777889999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCC
Q 009359 331 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410 (536)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~ 410 (536)
++..+|...++.+..+...+.++...+.++|.+...+.|.++.+|+.++.++..+...++...+...++..+.+.-.|.+
T Consensus 342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~ 421 (690)
T KOG1243|consen 342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH 421 (690)
T ss_pred cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence 99999999999999999999988889999999999999999999999999999999999988777888888888888888
Q ss_pred hHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChH
Q 009359 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 490 (536)
Q Consensus 411 ~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~ 490 (536)
..+|..---+++.++..+.+......+...+.+.+.|+...-|.++...+....+.+.......+++|.+..+.-|++..
T Consensus 422 ~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~ 501 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKT 501 (690)
T ss_pred CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccc
Confidence 89999988899998887766554444444566678899999999999999998888887777789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhC
Q 009359 491 YRMTILQAISLLAPVMG 507 (536)
Q Consensus 491 ~r~~~~~~l~~l~~~~~ 507 (536)
+|..+..++......+.
T Consensus 502 vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 502 VRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhHHHHHHHHHHhhhh
Confidence 99999888887665544
No 69
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.11 E-value=2.9e-06 Score=88.99 Aligned_cols=444 Identities=13% Similarity=0.100 Sum_probs=238.7
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHH
Q 009359 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIY 168 (536)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l 168 (536)
..+...+..+...+|..|++|+..++..-+.=-..+.+...+-+-..|....||.+|..+++...-.. ++...+++..+
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~~i 897 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYDQI 897 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHHHH
Confidence 34445556788899999999999998753321011122233334445667899999999988765432 44667777888
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhh-cccCc----hhhhhhh-
Q 009359 169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG-KLLEP----QDCVAHI- 242 (536)
Q Consensus 169 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~----~~~~~~l- 242 (536)
.+.+.|+.-.||+.+.+.+..++...+.-....++..-+....+|++..++..+.+++..+= .-.+. ......+
T Consensus 898 ~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~ 977 (1692)
T KOG1020|consen 898 IERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKIS 977 (1692)
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhH
Confidence 88899999999999999999999876653344555566666677887778877777765441 00110 0000000
Q ss_pred --HHHHH---HhcCC-------------------------------------------------------CCHHHHH-HH
Q 009359 243 --LPVIV---NFSQD-------------------------------------------------------KSWRVRY-MV 261 (536)
Q Consensus 243 --~~~l~---~~~~d-------------------------------------------------------~~~~vR~-~~ 261 (536)
...+. .+..+ ++..+|. +.
T Consensus 978 ~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~ 1057 (1692)
T KOG1020|consen 978 LEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAY 1057 (1692)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHH
Confidence 00000 00011 1111111 11
Q ss_pred HHHHHHHHHHhCCCcccc---chHHHHHHhcCC-CcHHHHHHHHHhHHHHHhhcC--hHHHHHhhhHHHHHhccCCCHHH
Q 009359 262 ANQLYELCEAVGPEPTRS---DVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSDSSQHV 335 (536)
Q Consensus 262 ~~~l~~l~~~~~~~~~~~---~l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~--~~~~~~~i~~~l~~l~~d~~~~v 335 (536)
..+|..++...+.-.... .+.|.+..-.+. .+..+-...+.-+..+..... ++.+...+-..|..++--.+..+
T Consensus 1058 lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~ 1137 (1692)
T KOG1020|consen 1058 LSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMAT 1137 (1692)
T ss_pred HHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHH
Confidence 111111111111000000 111111111000 111111222222222222111 12222333333333333333444
Q ss_pred HHHHHHHHHHhhhhhCHH-HHHHhHHHHHHHhh-------CCC----CHHHHHHHHHhhHHHHhhhc--------h----
Q 009359 336 RSALATVIMGMAPILGKD-ATIEQLLPIFLSLL-------KDE----FPDVRLNIISKLDQVNQVIG--------I---- 391 (536)
Q Consensus 336 r~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l-------~d~----~~~vr~~a~~~l~~l~~~~~--------~---- 391 (536)
-..++.+++.++..+... .....++..+...+ +++ +...-...+-++|.+++++. +
T Consensus 1138 V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~ 1217 (1692)
T KOG1020|consen 1138 VVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQ 1217 (1692)
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchh
Confidence 455666677776642211 11222222222222 222 11122234446677766542 1
Q ss_pred --hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHH--HHHHHHHHHHHHH-
Q 009359 392 --DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR--DAAANNVKRLAEE- 466 (536)
Q Consensus 392 --~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr--~~a~~~l~~l~~~- 466 (536)
+...+.++-.+.-+.++.+..+|..|+..++.++..-..=+..+.+...+...++|.+..+. ..+...+..+...
T Consensus 1218 ~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ee 1297 (1692)
T KOG1020|consen 1218 EGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEE 1297 (1692)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 23446677777777888889999999999999987666655667788888887776655443 3344443332211
Q ss_pred ---h---Chhh---------------------------hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHH
Q 009359 467 ---F---GPDW---------------------------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS 513 (536)
Q Consensus 467 ---~---~~~~---------------------------~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~ 513 (536)
+ |.+| +.+.+++.+.+.+-|.|..+|..|++.+.-+....=- .--
T Consensus 1298 e~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLV--hP~ 1375 (1692)
T KOG1020|consen 1298 EKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLV--HPV 1375 (1692)
T ss_pred HHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCC--Ccc
Confidence 0 1100 2245667777778889999999999999887643100 123
Q ss_pred hHHHHHHhhcCCccchhhhccC
Q 009359 514 QLLPVVINASKDSESVAVTYSH 535 (536)
Q Consensus 514 ~~~~~l~~~l~d~~~~vr~~a~ 535 (536)
+.+|.+..+-.|+.++.|+.|+
T Consensus 1376 ~cvPtLIAL~Tdp~~~~r~~Ad 1397 (1692)
T KOG1020|consen 1376 HCVPTLIALETDPSQAIRHVAD 1397 (1692)
T ss_pred chhhhheeecCChHHHHHHHHH
Confidence 6799999999999999998774
No 70
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=9.8e-07 Score=85.96 Aligned_cols=219 Identities=15% Similarity=0.155 Sum_probs=121.3
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHh-ccCCCHHHHHHHHHHHHHhhhhhCHHHHHHh
Q 009359 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQ 358 (536)
Q Consensus 280 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 358 (536)
..+..+..+|...++.|+..|+.++..+.. .+..+ ...-..+..+ ...++-+++.....-+..+.. +.+...+.
T Consensus 243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~al-k~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~ 317 (948)
T KOG1058|consen 243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTAL-KAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQG 317 (948)
T ss_pred HHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHH-HHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHH
Confidence 345555666666666666666655554433 11111 1111111111 122333444444444444441 22223344
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHh---hcCCChHHHHHHHHHHHHHHhhhchhhHHH
Q 009359 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVGFFDD 435 (536)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~---~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~ 435 (536)
+.--++..+..++-+||..++...-.+...-..+.+...+-..+.+. -.+++...|+..++.+...+-.+.. +..
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aa 395 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAA 395 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHH
Confidence 44446678888999999988876555554333332222222222221 1245677899999999888765553 467
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhcc-CCChHHHHHHHHHHHHHhhhhC
Q 009359 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 436 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~~r~~~~~~l~~l~~~~~ 507 (536)
.++|.++.++.|.++.--...+..+....+.++. ....++..+.+.+. -....+-..++|.+|..+...+
T Consensus 396 tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 396 TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 7899999999999886666666666666665543 23445555544322 2345556677888887776544
No 71
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.08 E-value=3.9e-09 Score=102.12 Aligned_cols=253 Identities=15% Similarity=0.182 Sum_probs=207.4
Q ss_pred cchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc
Q 009359 214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE 293 (536)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~ 293 (536)
.+..-|..-...|....+.++++.+...++|.+...+.-.+ .-..+...+-.++..+..+.+...++|.+.++++-++
T Consensus 266 ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcc
Confidence 34445666666777777777777778888998887765443 1112233333444555555577789999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHH
Q 009359 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD 373 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 373 (536)
..+|..-++.+..+...+.++.+.+.|+|.+...+.|.++.+|...+..+..+++.++......+++..+...-.|+...
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~ 423 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGG 423 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999998877888999998888899999
Q ss_pred HHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHH
Q 009359 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR 453 (536)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr 453 (536)
+|.....|++.+...+.+......+...+.+-+.|+-..-|.+++..+....+.+........++|.+.-+.-|++..||
T Consensus 424 irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr 503 (690)
T KOG1243|consen 424 IRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVR 503 (690)
T ss_pred ccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchh
Confidence 99999999999988776654333444455556888889999999999999888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 009359 454 DAAANNVKRLAEEFG 468 (536)
Q Consensus 454 ~~a~~~l~~l~~~~~ 468 (536)
..|..++......+.
T Consensus 504 ~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 504 DTAEKAIRQFLEKLE 518 (690)
T ss_pred hHHHHHHHHHHhhhh
Confidence 999999988776544
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=3.6e-06 Score=81.81 Aligned_cols=221 Identities=13% Similarity=0.120 Sum_probs=149.4
Q ss_pred ccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHH
Q 009359 81 LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEAL 160 (536)
Q Consensus 81 ~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~ 160 (536)
+.....+.+-+..++++.-+.+|+.|+-.+-+++...++ .....+|.+..-..|+++.+.-+|...|+.+....+..+
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe--Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE--ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH--hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 334455556667788888999999999999998877653 233456777777889999999999999999998877764
Q ss_pred HHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcch-HHHHHHHHhHHHhhcc--cCc
Q 009359 161 KTELRTIYRQLCQD--DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKL--LEP 235 (536)
Q Consensus 161 ~~~l~~~l~~ll~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~--~~~ 235 (536)
.+ +-|.+.+++.+ .+|. -...++.++.+.-. .+.....++|.+.+++.+... .+-..++.++-...-. .++
T Consensus 217 L~-LAP~ffkllttSsNNWm-LIKiiKLF~aLtpl--EPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 217 LQ-LAPLFYKLLVTSSNNWV-LIKLLKLFAALTPL--EPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred cc-ccHHHHHHHhccCCCee-hHHHHHHHhhcccc--CchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 43 44555555533 3454 33445555554432 134456678888888876543 3333444433322111 112
Q ss_pred -hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHh
Q 009359 236 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (536)
Q Consensus 236 -~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 309 (536)
.......+.-+..++.|.+++.|.-.+-+++.+++..+.. ...-...+++++.|.++.+|..|+.-+..++.
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 2223345566666889999999999999999998764321 12345788899999999999999999988876
No 73
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1e-06 Score=85.79 Aligned_cols=431 Identities=13% Similarity=0.173 Sum_probs=227.4
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc--ccCCchHHHHHHHHHHhchhccc-CCccc-hhc
Q 009359 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYV-GGLEY-ANV 86 (536)
Q Consensus 11 i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~vr~~a~~~l~~l~~~~-~~~~~-~~~ 86 (536)
=..+.+.+.+.+.+.+-.|.+.+-.+- +..+.. +.++-++.. +-..+.+..+...-.+ .+++.. +.... .+.
T Consensus 22 ~~~ik~~Lek~~~~~KIeamK~ii~~m--lnGe~~-p~Llm~IiRfvlps~~~elKKLly~yw-E~vPKt~~dgkl~~EM 97 (948)
T KOG1058|consen 22 EDEIKEKLEKGDDEVKIEAMKKIIALM--LNGEDL-PSLLMTIIRFVLPSRNHELKKLLYYYW-ELVPKTDSDGKLLHEM 97 (948)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHH--HcCCCc-hHHHHHHhheeeccCchHHHHHHHHHH-HHccccCCCcccHHHH
Confidence 457888999999999999987754432 222332 223322222 3344444444333222 122211 11222 233
Q ss_pred cch--HHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH--HHH
Q 009359 87 LLP--PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--LKT 162 (536)
Q Consensus 87 ll~--~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~~~ 162 (536)
|+- -++.-+++|++.+|...++.++++ .+....+.++|.+.....+....+|..|.-++..++.....- -.+
T Consensus 98 ILvcna~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDap 173 (948)
T KOG1058|consen 98 ILVCNAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAP 173 (948)
T ss_pred HHHHHHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChH
Confidence 332 255666889999999988877665 445677789999999999999999999999988888763221 123
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhh
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 242 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (536)
+++..++ ..+.++.-++.|.-.|-. .+++.....+...+.+. .+-++......++.+-..+..-+.+ ....
T Consensus 174 eLi~~fL--~~e~DpsCkRNAFi~L~~----~D~ErAl~Yl~~~idqi-~~~~~~LqlViVE~Irkv~~~~p~~--~~~~ 244 (948)
T KOG1058|consen 174 ELIESFL--LTEQDPSCKRNAFLMLFT----TDPERALNYLLSNIDQI-PSFNDSLQLVIVELIRKVCLANPAE--KARY 244 (948)
T ss_pred HHHHHHH--HhccCchhHHHHHHHHHh----cCHHHHHHHHHhhHhhc-cCccHHHHHHHHHHHHHHHhcCHHH--hhHH
Confidence 3333322 245556666665544333 22222223232222211 1223344444444444444422221 2345
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhcChHHHHHhhh
Q 009359 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHIL 321 (536)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~ 321 (536)
+..+..+++..+..|+..++.++..+... .......-..++.++ +.++..|+...+.-+..+.. ..+.+.+.+.
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~ 319 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLI 319 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHH
Confidence 55666666666777777776666554321 000111112222222 23333455444444444442 2233334444
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhh---CCCCHHHHHHHHHhhHHHHhhhchhHHHhhH
Q 009359 322 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (536)
Q Consensus 322 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 398 (536)
--+...++.++-.||..++...-.++..-+.+.....+-..+.+.- .|++...|+..++++....-.+. .+...+
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--~~aatv 397 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--EVAATV 397 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--HHHHHH
Confidence 4445666778888998888877777665554433332222222221 23445678888888887765543 345778
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHHHHHh
Q 009359 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 399 ~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (536)
+|.+.+++.|.+..--...+..+....+.++.- ...++.-++. +-+=....+-..|++.+|..+...
T Consensus 398 V~~ll~fisD~N~~aas~vl~FvrE~iek~p~L--r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 398 VSLLLDFISDSNEAAASDVLMFVREAIEKFPNL--RASIIEKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 888888888888765555555555554443321 1111111111 111122334456667777666544
No 74
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=2.2e-06 Score=88.05 Aligned_cols=351 Identities=18% Similarity=0.184 Sum_probs=231.9
Q ss_pred cccccccccCCchHHHHHHHHHHhchhcccCC-----------ccchhccchHHHhhhcCc------chHHHHHHHHHHH
Q 009359 49 LIPFLSENNDDDDEVLLAMAEELGVFIPYVGG-----------LEYANVLLPPLETLCTVE------ETCVRDKAVESLC 111 (536)
Q Consensus 49 l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~-----------~~~~~~ll~~l~~l~~~~------~~~vr~~a~~~l~ 111 (536)
+.|.+.......++.|..++..|..++....+ .++....+|.+.++.... ....|...+..+.
T Consensus 519 la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~ 598 (1176)
T KOG1248|consen 519 LAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIR 598 (1176)
T ss_pred HHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHH
Confidence 33333333344568888888888887765311 124456666655554332 3345556666655
Q ss_pred HHHhhcChhhHHhhHHHHHHHHhcCcccch----hhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009359 112 RIGSQMREQDVVEHFIPLVKRLAAGEWFTA----RVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNL 187 (536)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~----r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l 187 (536)
...-+..+.+....+..-+..+..+.+..+ +.+...++..+.+..+......++.......+..+..+|..+...|
T Consensus 599 ~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL 678 (1176)
T KOG1248|consen 599 VDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLL 678 (1176)
T ss_pred HHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHH
Confidence 322233334444445555555554443222 3334445555556666666666665555555666899999999999
Q ss_pred HHHHHHHhh----hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch--hhhhhhHHHHHHhcCCCCHHHHHHH
Q 009359 188 GKFAATVEA----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMV 261 (536)
Q Consensus 188 ~~~~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~ 261 (536)
..+...-.. ......+...+..-+++.....|.....+|..+.+..+.+ .+....+|-+.-..++-+...|..+
T Consensus 679 ~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~A 758 (1176)
T KOG1248|consen 679 EELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNA 758 (1176)
T ss_pred HHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhH
Confidence 998876222 2344566666667777777788999999999999888842 2344455554445588888889888
Q ss_pred HHHHHHHHH--H---hCCCc---cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc---ChHHHHHhhhHHHHHhccC
Q 009359 262 ANQLYELCE--A---VGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---NPELAIQHILPCVKELSSD 330 (536)
Q Consensus 262 ~~~l~~l~~--~---~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~---~~~~~~~~i~~~l~~l~~d 330 (536)
..+|..++. . .|++. ..+.+++.+...+-.....++...+-++..+.... ........++..+...+..
T Consensus 759 f~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s 838 (1176)
T KOG1248|consen 759 FALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS 838 (1176)
T ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc
Confidence 888888772 2 34443 23455666666555555555555456666555432 2334567888888888999
Q ss_pred CCHHHHHHHHHHHHHhhhhhCHHH---HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHH
Q 009359 331 SSQHVRSALATVIMGMAPILGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (536)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~ 400 (536)
.++.++.+|+..+..++..++... +.+.++|.++.+++|....+|..+-..+..++..+|.+.+ +.++|
T Consensus 839 ~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL-e~~~p 910 (1176)
T KOG1248|consen 839 NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL-ESFLP 910 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH-HhhCH
Confidence 999999999999999998888654 4567899999999999999999999999999999998876 44444
No 75
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.99 E-value=1.7e-05 Score=79.72 Aligned_cols=449 Identities=14% Similarity=0.082 Sum_probs=237.7
Q ss_pred CCCCCCCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCC
Q 009359 1 MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG 80 (536)
Q Consensus 1 ~~~~~~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~ 80 (536)
|+.|++=..-+...+.++.+.|.+.++-.--.|...++.- |+...-.+-.++.++.|.++.+|..|.+.++.+ +.
T Consensus 47 M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~-P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~ 121 (757)
T COG5096 47 MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK-PELALLAVNTIQKDLQDPNEEIRGFALRTLSLL----RV 121 (757)
T ss_pred HhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc----Ch
Confidence 4455552222566677777888887776666666666544 454444444555569999999999999999887 44
Q ss_pred ccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhh-HHHHHHHHhcCcccchhhHHHhhhhhhccCCChH
Q 009359 81 LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEH-FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA 159 (536)
Q Consensus 81 ~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 159 (536)
++.+..+++.+...++|+++.||+.|+-++.++-+.- ++-+.+. ....+..+..|.++.+-..|...+..+.+.....
T Consensus 122 ~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~ 200 (757)
T COG5096 122 KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHG 200 (757)
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhh
Confidence 6678888999999999999999999999999987643 3333333 5666777888888888888888777776652222
Q ss_pred HHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch
Q 009359 160 LKTELRTIYRQLCQDDMPM--VRRSAATNLGKFAATVEAAHLK-SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 236 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~--vr~~a~~~l~~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (536)
+...+...+.++. =.++. ....-...+..+....+..... ..+...+.-..+..++.+-..++..+-.+....+..
T Consensus 201 ~~~~~~~~i~~l~-~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~ 279 (757)
T COG5096 201 YSLEVILRIPQLD-LLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSN 279 (757)
T ss_pred HHHHHHHHhhhcc-chhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccc
Confidence 3333222222221 00122 1233333333333333221111 112222222345667788888888888887777665
Q ss_pred hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHH
Q 009359 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA 316 (536)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (536)
.+.....|.+..++..+ ......++.-...+.-....+. .......+..-..|+ .+-.- +-+.........+..
T Consensus 280 ~~~~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l~~~~k~-~~~~~~~f~~~~~~~--i~~~l--ek~~~~t~l~~~~n~ 353 (757)
T COG5096 280 NLFLISSPPLVTLLAKP-ESLIQYVLRRNIQIDLEVCSKL-LDKVKKLFLIEYNDD--IYIKL--EKLDQLTRLADDQNL 353 (757)
T ss_pred cHHHhhccHHHHHHcCC-HHHHHHHHHHhhHHHHHhhHHH-HHHHhhhhhhhccch--HHHHH--HHHHHHhhcCCchhh
Confidence 55555666666665554 3333333333322221111000 001111111111111 11000 000000000011111
Q ss_pred HHhhhHHHHHhccC--CCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC---CCCHHHHHHH-----HHhhH---
Q 009359 317 IQHILPCVKELSSD--SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK---DEFPDVRLNI-----ISKLD--- 383 (536)
Q Consensus 317 ~~~i~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~~~~vr~~a-----~~~l~--- 383 (536)
..+++-+.....+ .+..+-..++++|+.++... +.....++..++..+. -..+.+-..+ +..+.
T Consensus 354 -~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~--~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~ 430 (757)
T COG5096 354 -SQILLELIYYIAENHIDAEMVSEAIKALGDLASKA--ESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISV 430 (757)
T ss_pred -HHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhc
Confidence 2244444444444 67777788888888887654 2333445555555555 2222111111 11111
Q ss_pred HHHhhhchhHHHhhHHHHH---HHhhc--CCChHHHHHH-----HHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHH
Q 009359 384 QVNQVIGIDLLSQSLLPAI---VELAE--DRHWRVRLAI-----IEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR 453 (536)
Q Consensus 384 ~l~~~~~~~~~~~~i~~~l---~~~~~--~~~~~~R~~a-----~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr 453 (536)
.....+..+ ..+..++.+ .+.+. +..++.+.++ ++.++.++...... .+..+........|+...|+
T Consensus 431 ~~lr~l~~~-~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~--~~~~l~~~~~~~~~E~levq 507 (757)
T COG5096 431 LVLRILPNE-YPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRL--EPELLRIAISNFVDETLEVQ 507 (757)
T ss_pred chhhhcCCc-chhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhh--hHHHHHHHHHHhcccchHHH
Confidence 111122212 012222222 22222 2246667766 77777777654432 24455566667778888999
Q ss_pred HHHHHHHHHHHHHhC
Q 009359 454 DAAANNVKRLAEEFG 468 (536)
Q Consensus 454 ~~a~~~l~~l~~~~~ 468 (536)
......-.++.-...
T Consensus 508 ~~Il~~svkl~~~~~ 522 (757)
T COG5096 508 YTILMSSVKLIANSI 522 (757)
T ss_pred HHHHHHHHHHHHhCc
Confidence 888777766655443
No 76
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.6e-06 Score=80.18 Aligned_cols=252 Identities=12% Similarity=0.062 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH----H---------HH----
Q 009359 256 RVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----L---------AI---- 317 (536)
Q Consensus 256 ~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~---------~~---- 317 (536)
.+|..+.+.+..++.++|-. ...-++...+-..+.|..+.++..+...+..+...++.+ . +.
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l 349 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML 349 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence 47888888888888776632 122345566666778888888888888887776644310 0 00
Q ss_pred ---------------------------------------HhhhHHHHHhccC-CCHHHHHHHHHHHHHhhhhhC---HHH
Q 009359 318 ---------------------------------------QHILPCVKELSSD-SSQHVRSALATVIMGMAPILG---KDA 354 (536)
Q Consensus 318 ---------------------------------------~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~---~~~ 354 (536)
....+.+..-..| ++.-+|.+|.++.+.+.-.-+ .-.
T Consensus 350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~ 429 (728)
T KOG4535|consen 350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVI 429 (728)
T ss_pred cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHH
Confidence 0111111111122 222355555555544332111 112
Q ss_pred HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch---------hHHHhhHHHHHHHhhc---CCChHHHHHHHHHHH
Q 009359 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---------DLLSQSLLPAIVELAE---DRHWRVRLAIIEYIP 422 (536)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~~~i~~~l~~~~~---~~~~~~R~~a~~~l~ 422 (536)
|.......+...+.|....+|..++.+++.+...+-. +.+...++..+..... -.++++|..++++++
T Consensus 430 fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLg 509 (728)
T KOG4535|consen 430 FVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALG 509 (728)
T ss_pred HHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 3344455666677788888999999999998776521 1222233333333322 246889999999999
Q ss_pred HHHhhhchhh---HHHHHHHHHHHH----hcCcchHHHHHHHHHHHHHHHHhChhh----hhhchhHHHHhhccC-CChH
Q 009359 423 LLASQLGVGF---FDDKLGALCMQW----LKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINN-PHYL 490 (536)
Q Consensus 423 ~l~~~~~~~~---~~~~l~~~l~~~----l~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d-~~~~ 490 (536)
.+.+.+.+-. +...+-....++ .-.....||.++++++|.+.++-.-++ ....+.|.|..+..+ .|..
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFK 589 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFK 589 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccce
Confidence 8877655211 111111112222 223455799999999999998743221 225678888887665 6899
Q ss_pred HHHHHHHHHHHHhhhhC
Q 009359 491 YRMTILQAISLLAPVMG 507 (536)
Q Consensus 491 ~r~~~~~~l~~l~~~~~ 507 (536)
+|..|..++..-++..+
T Consensus 590 VRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 590 VRIRAAAALSVPGKREQ 606 (728)
T ss_pred EeehhhhhhcCCCCccc
Confidence 99999998887665543
No 77
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.93 E-value=5.1e-07 Score=92.03 Aligned_cols=335 Identities=12% Similarity=0.047 Sum_probs=215.7
Q ss_pred HHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh-hHHHHH
Q 009359 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH-LKSEIM 204 (536)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~l~ 204 (536)
+.+....+...+....|.....+...+ .. .+...+....+..+..-..+..-.+++.++..+....+.+. ....++
T Consensus 64 l~~~~~~~l~~~~~~~~~~~~~~~~~i-~~--~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~ 140 (815)
T KOG1820|consen 64 LLSFGLKCLDSKRVNIRDTKTQSLLRI-GK--LEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI 140 (815)
T ss_pred eccchhhhcccccccccCcchhHHHHH-HH--hhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 444444455444444444444443333 00 12334455566666666667766777777777776655432 222233
Q ss_pred HHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhh-------hhhHH----------------------HHHHhcCCCCH
Q 009359 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV-------AHILP----------------------VIVNFSQDKSW 255 (536)
Q Consensus 205 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-------~~l~~----------------------~l~~~~~d~~~ 255 (536)
+.+-++. +..||..+...+..+.+..|..... ...+. ....-..+++|
T Consensus 141 ~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 217 (815)
T KOG1820|consen 141 KHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNV 217 (815)
T ss_pred ccCcccc---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCCh
Confidence 3333333 4457777777777776555432100 00000 00011112233
Q ss_pred HHHHHHHHHHHHHHH-----------HhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC---hHHHHHhhh
Q 009359 256 RVRYMVANQLYELCE-----------AVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHIL 321 (536)
Q Consensus 256 ~vR~~~~~~l~~l~~-----------~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~i~ 321 (536)
.-+...-........ .+......+.+-+.+...+.+++|.-|..|+..+...++.-+ .+...+.+.
T Consensus 218 ~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~ 297 (815)
T KOG1820|consen 218 KEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLG 297 (815)
T ss_pred hhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHH
Confidence 222111111111100 001111133566777788889999999999999988877544 123344555
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhhhhCHH--HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHH
Q 009359 322 PCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (536)
Q Consensus 322 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 399 (536)
..+.....|.|..|-..++..+..++..++.. .+...+.|.++..+++....+|..+..++..++..... ..+.
T Consensus 298 ~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----~~~~ 373 (815)
T KOG1820|consen 298 ILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----SKMS 373 (815)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----HHHH
Confidence 66667778999999999999999999887754 35577889999999999999999999999998874443 6678
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhhchh----hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh
Q 009359 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (536)
Q Consensus 400 ~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (536)
+.+..++.++++++|.....++.......++. .....+.|.+.....|.+..||.+|.++++.+.+.+|..
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 88888999999999999999999888877732 234678899999999999999999999999999998875
No 78
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=9.6e-05 Score=75.02 Aligned_cols=416 Identities=15% Similarity=0.091 Sum_probs=232.0
Q ss_pred ChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-c-cCC-chHHHHHHHHHHhchhc-ccCCc-----------cch
Q 009359 20 NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N-NDD-DDEVLLAMAEELGVFIP-YVGGL-----------EYA 84 (536)
Q Consensus 20 s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~-~d~-~~~vr~~a~~~l~~l~~-~~~~~-----------~~~ 84 (536)
..|+..|..|...|.++-+.-| .++.+.+ + .|. +..||++|+-.+.+.+. ..+.. +-.
T Consensus 15 d~d~~~R~~AE~~L~q~~K~pg-------Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk 87 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQLEKQPG-------FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDK 87 (1010)
T ss_pred CCChHHHHHHHHHHHHhhcCCc-------HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHH
Confidence 4559999999999888744322 2333433 2 333 34689999999987643 22211 001
Q ss_pred hccch-HHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccC----CCh-
Q 009359 85 NVLLP-PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS----APE- 158 (536)
Q Consensus 85 ~~ll~-~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~----~~~- 158 (536)
..+-. ++..+++. +..+|-.-..++..+...--+ ..++.+.+.+..+.++.+...-..+..++..+.+. ..+
T Consensus 88 ~~irenIl~~iv~~-p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~ee 165 (1010)
T KOG1991|consen 88 AVIRENILETIVQV-PELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEE 165 (1010)
T ss_pred HHHHHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccc
Confidence 11222 22333333 667788777888777765444 45677889999999888766666666666665432 111
Q ss_pred ---------HHHHHHHHHHHHhcCCCChHHH---HHHHHHHHHHHHH-Hhhh----hhHHHHHHHHHHhhc---------
Q 009359 159 ---------ALKTELRTIYRQLCQDDMPMVR---RSAATNLGKFAAT-VEAA----HLKSEIMSIFEELTQ--------- 212 (536)
Q Consensus 159 ---------~~~~~l~~~l~~ll~d~~~~vr---~~a~~~l~~~~~~-~~~~----~~~~~l~~~l~~~l~--------- 212 (536)
...+.++.....++.+++...- +..++.+..++.. ++.. .........+...++
T Consensus 166 R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~ 245 (1010)
T KOG1991|consen 166 RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLS 245 (1010)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhccc
Confidence 1334555566667777754432 2333333333222 1211 111222233333322
Q ss_pred -C-------cchHHHHHHHHhHHHhhcccCchh----------------hhhhhHHHHHHhcC---C---CCHHHHHHHH
Q 009359 213 -D-------DQDSVRLLAVEGCGALGKLLEPQD----------------CVAHILPVIVNFSQ---D---KSWRVRYMVA 262 (536)
Q Consensus 213 -d-------~~~~vr~~a~~~l~~l~~~~~~~~----------------~~~~l~~~l~~~~~---d---~~~~vR~~~~ 262 (536)
| +=|.+++-|+..+.++.+.+++.. +...++..+.+.+. . -+++|-..+.
T Consensus 246 ~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l 325 (1010)
T KOG1991|consen 246 LDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLL 325 (1010)
T ss_pred CChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 1 124678999999999988776521 11122222222221 1 1233333343
Q ss_pred HHHHHHHHHhCC-Cccccch----HHHHHHhc-----------CCCcHHHH-------------HHHHHhHHHHHhhcCh
Q 009359 263 NQLYELCEAVGP-EPTRSDV----VPAYVRLL-----------RDNEAEVR-------------IAAAGKVTKICRILNP 313 (536)
Q Consensus 263 ~~l~~l~~~~~~-~~~~~~l----~~~l~~ll-----------~d~~~~vr-------------~~a~~~l~~~~~~~~~ 313 (536)
..+.+....-.. ....+++ ..++..++ .|+...+| .+|...+..++..-|+
T Consensus 326 ~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~k 405 (1010)
T KOG1991|consen 326 NFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGK 405 (1010)
T ss_pred HHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcch
Confidence 333332211000 0001111 11111221 13333343 5566666667665555
Q ss_pred HHHHHhhhHHHHHhcc--------CCCHHHHHHHHHHHHHhhhhhCH-----HHHHHhHHHHHHHhhCCCCHHHHHHHHH
Q 009359 314 ELAIQHILPCVKELSS--------DSSQHVRSALATVIMGMAPILGK-----DATIEQLLPIFLSLLKDEFPDVRLNIIS 380 (536)
Q Consensus 314 ~~~~~~i~~~l~~l~~--------d~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (536)
+.+ +.+++.+.+.+. ..+++-+..|+..++.+++.+.+ ......+.+.+...++++.--+|..|+.
T Consensus 406 e~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 406 ETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW 484 (1010)
T ss_pred hhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence 544 555555554443 45688889999999999876643 2334556788888899999999999999
Q ss_pred hhHHHH-hhhchhHHHhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhhch--hhHHHHHHHHHHHHh
Q 009359 381 KLDQVN-QVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWL 445 (536)
Q Consensus 381 ~l~~l~-~~~~~~~~~~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l 445 (536)
.++.++ -.+........++....+.+. |+.-.+|..|+-++..+...... ..+.+++-|.+.+++
T Consensus 485 vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL 553 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELL 553 (1010)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHH
Confidence 999998 445555555666776666666 88899999999999988765442 224445444444433
No 79
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.91 E-value=5.4e-07 Score=91.85 Aligned_cols=193 Identities=15% Similarity=0.180 Sum_probs=158.2
Q ss_pred HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC---HHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch
Q 009359 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (536)
Q Consensus 315 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 391 (536)
.+.+.+-+.+..-+.+++|.-|..+++.+....+.-+ .+.+...+...+.-.+.|.+-.|-..++.++..++..++.
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 3456666777777889999999999998887765444 2233455666666678899999999999999999988876
Q ss_pred h--HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh
Q 009359 392 D--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 392 ~--~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
. .+...++|.+.+.+.+....+|..+..++..++...+ ...+.+.+..++.+.++.+|..+...+.......++
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 4 3456788999999999999999999999999887433 456778899999999999999999999999988873
Q ss_pred h----hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHH
Q 009359 470 D----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 511 (536)
Q Consensus 470 ~----~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~ 511 (536)
. .....+.|.+....+|.+.+||.++.++++.+.+.+|.+.+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2 23378899999999999999999999999999999997654
No 80
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.1e-05 Score=73.85 Aligned_cols=63 Identities=11% Similarity=-0.060 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHH
Q 009359 437 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISL 501 (536)
Q Consensus 437 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~ 501 (536)
.+..+.+-+.-.++.-|.-.+.++.+++..++. +...+...+....+-.|..+++.+++.+.-
T Consensus 522 qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PE--i~~~v~~vFq~~~n~~D~ElQqRa~EYLql 584 (938)
T KOG1077|consen 522 QFSLLHEKLHLCSPVTRALLLTTYIKLINLFPE--IKSNVQKVFQLYSNLIDVELQQRAVEYLQL 584 (938)
T ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHhhChh--hhHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 344444444444555666667777776665422 334444444444445688888888777664
No 81
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.8e-05 Score=76.14 Aligned_cols=418 Identities=16% Similarity=0.141 Sum_probs=224.7
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcc-cC---Cc-
Q 009359 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY-VG---GL- 81 (536)
Q Consensus 7 ~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~-~~---~~- 81 (536)
.|.-+...+.+=-++||.+|+.|.+.|..... .+...-.++.++.+-+ -++.+|.+++-.+.++++. .. +.
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~---q~~y~l~lL~Lv~~~~-~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEG---QQNYPLLLLNLVANGQ-QDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhcc---CCCchHHHHHHHhccC-cChhHHHHHHHHHHHHHHhccCcCCCCc
Confidence 45556666666668889999999999887743 2222334455554311 2678999999999988872 21 11
Q ss_pred -----cchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHH-HhcCcc---cchhhHHHhhhhhh
Q 009359 82 -----EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKR-LAAGEW---FTARVSSCGLFHVA 152 (536)
Q Consensus 82 -----~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-l~~~~~---~~~r~~a~~~l~~~ 152 (536)
.-.+.+-..+..++-+....+...-.+++..+++.--++ .|+.++|.+.. +..++. ..++..+..++...
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~-kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~ 157 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPD-KWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRY 157 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccch-hhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 112233334444555556677888888888888654333 45556665544 443332 23444554444443
Q ss_pred ccCC-ChHHH---HHHHH----HHH-------Hhc--CCCChHHHHHHHHHHHHHHHHHhh----------hhhHHHHHH
Q 009359 153 YPSA-PEALK---TELRT----IYR-------QLC--QDDMPMVRRSAATNLGKFAATVEA----------AHLKSEIMS 205 (536)
Q Consensus 153 ~~~~-~~~~~---~~l~~----~l~-------~ll--~d~~~~vr~~a~~~l~~~~~~~~~----------~~~~~~l~~ 205 (536)
-... +++.+ +.++. .+. +++ .+.+...-..-...+--+++.+.. +...+..++
T Consensus 158 R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 158 RPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred CcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 2221 11211 11111 222 222 122221111111222222332221 333455667
Q ss_pred HHHHhhcCc---------c----hHHHHHHHHhHHHhhcccCch--hhhhhhHHHHHHhcCCCCHH-----HHHHHHHHH
Q 009359 206 IFEELTQDD---------Q----DSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWR-----VRYMVANQL 265 (536)
Q Consensus 206 ~l~~~l~d~---------~----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~-----vR~~~~~~l 265 (536)
.+.++++-+ + ..+|...++...-.+..+.++ .+.+.++.....++.+-++. ....+.+.|
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FL 317 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFL 317 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 777766511 1 345666677666666555542 23444444444554443222 233445555
Q ss_pred HHHHHHhCC-----------------------------CccccchHHHHHHhcCCCcHHH-HHHHHHhHHHHHhhcChH-
Q 009359 266 YELCEAVGP-----------------------------EPTRSDVVPAYVRLLRDNEAEV-RIAAAGKVTKICRILNPE- 314 (536)
Q Consensus 266 ~~l~~~~~~-----------------------------~~~~~~l~~~l~~ll~d~~~~v-r~~a~~~l~~~~~~~~~~- 314 (536)
..+++.-.. +.+-+.-+..+-+-++-.|.+. |.+|+.-+..+++.+...
T Consensus 318 t~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~v 397 (960)
T KOG1992|consen 318 TSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQV 397 (960)
T ss_pred HHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchh
Confidence 555432110 0111122333333343334343 667888888898877432
Q ss_pred --HHHHhhhHHHHHhccC--CCHHHHHHHHHHHHHhhhhhC---------------HHHHHHhHHHHHHHhhCCCCHHHH
Q 009359 315 --LAIQHILPCVKELSSD--SSQHVRSALATVIMGMAPILG---------------KDATIEQLLPIFLSLLKDEFPDVR 375 (536)
Q Consensus 315 --~~~~~i~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~---------------~~~~~~~l~~~l~~~l~d~~~~vr 375 (536)
.+...+-..+.+..++ .+|.-+..++..+..++..-+ .++|...++|.+..-=..+.+-+|
T Consensus 398 t~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilk 477 (960)
T KOG1992|consen 398 TGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILK 477 (960)
T ss_pred HHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchh
Confidence 1222222333444444 458777777777666654311 234556666665543334567788
Q ss_pred HHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch
Q 009359 376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (536)
Q Consensus 376 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~ 430 (536)
..+++-+-.+-+.+|++.. -.++|.+.++++.+..-+..-|+.++..+....++
T Consensus 478 a~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 478 ADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred hcccceeeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 8888877777777787766 56889999999998888888888888887654433
No 82
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.84 E-value=0.0002 Score=72.03 Aligned_cols=501 Identities=13% Similarity=0.134 Sum_probs=253.5
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCC---------
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG--------- 80 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~--------- 80 (536)
.|-.++.+..|.|+.+|..|...+.++....| ....|..... -.+.....|+.+.-.|.+++..-..
T Consensus 5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~---f~~aL~~va~-~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 5 AIIELLSGSLSADQNVRSQAETQLKQLELTEG---FGVALAEVAA-NKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHhccccchH---HHHHHHHHHh-CcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 36688999999999999999999988753222 2222222211 1234456677777667666542110
Q ss_pred ----ccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCC
Q 009359 81 ----LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA 156 (536)
Q Consensus 81 ----~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~ 156 (536)
.+....+...+..++-+++..+|..+..++..++..--| +.++.++|.+.++..+.+...-..+.+++..+...+
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 112234444555555688888999999999888775433 457778899888888766666777888888776654
Q ss_pred ChHHH----HHHHH---HHHHhcCCCChHHHHHHH--HHHHHHHHHHhh---------hhhHHHHHHHHHHhhc------
Q 009359 157 PEALK----TELRT---IYRQLCQDDMPMVRRSAA--TNLGKFAATVEA---------AHLKSEIMSIFEELTQ------ 212 (536)
Q Consensus 157 ~~~~~----~~l~~---~l~~ll~d~~~~vr~~a~--~~l~~~~~~~~~---------~~~~~~l~~~l~~~l~------ 212 (536)
..+.. .-.++ .+..+....+...|..++ ..+......... ..+...+++.+...+.
T Consensus 160 ~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~ 239 (1005)
T KOG2274|consen 160 DVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRN 239 (1005)
T ss_pred HHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 32211 11111 222333444445555554 222222222111 1223334444443332
Q ss_pred Cc-chHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhc----------------------CCCCHHH---HHHHH--
Q 009359 213 DD-QDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFS----------------------QDKSWRV---RYMVA-- 262 (536)
Q Consensus 213 d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~----------------------~d~~~~v---R~~~~-- 262 (536)
+. ++..|..-++++..+.+.++. ..+....++.+.+.+ .|.++.+ -....
T Consensus 240 ~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i 319 (1005)
T KOG2274|consen 240 DGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQI 319 (1005)
T ss_pred ccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhH
Confidence 22 346777777888777766553 111111111111100 0111111 11111
Q ss_pred -HHHHHHHH------HhCCCccccchHHHHHHh------------------c--CCCcHHHHHHHHHhHHHHHhhcChH-
Q 009359 263 -NQLYELCE------AVGPEPTRSDVVPAYVRL------------------L--RDNEAEVRIAAAGKVTKICRILNPE- 314 (536)
Q Consensus 263 -~~l~~l~~------~~~~~~~~~~l~~~l~~l------------------l--~d~~~~vr~~a~~~l~~~~~~~~~~- 314 (536)
..+..++. .+.+ ....+++.+..+ . .|+...+|..+...+..+...++.+
T Consensus 320 ~eF~s~i~t~~~~~~ti~~--~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~ 397 (1005)
T KOG2274|consen 320 VEFLSTIVTNRFLSKTIKK--NLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEG 397 (1005)
T ss_pred HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchh
Confidence 11111111 0111 001111111100 0 1222233333333333332222211
Q ss_pred -----------------------------------------------HHHHhhhHHHHHh-ccCCCHHHHHHHHHHHHHh
Q 009359 315 -----------------------------------------------LAIQHILPCVKEL-SSDSSQHVRSALATVIMGM 346 (536)
Q Consensus 315 -----------------------------------------------~~~~~i~~~l~~l-~~d~~~~vr~~a~~~l~~l 346 (536)
.....++..+... .....+..-..+..+++..
T Consensus 398 i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~f 477 (1005)
T KOG2274|consen 398 INPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKF 477 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHH
Confidence 0011111111111 1122222222344444444
Q ss_pred hhh--hCHHHHHHhHHHHHHHh-hCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 009359 347 API--LGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (536)
Q Consensus 347 ~~~--~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~ 423 (536)
++. ..++. ...++...... ..|..+.+|..|+.++...|+.---....+.++..|..+..+.+..+-...+++++.
T Consensus 478 s~~~~~~~~~-~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~ 556 (1005)
T KOG2274|consen 478 SSSTVINPQL-LQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSS 556 (1005)
T ss_pred HhhhccchhH-HHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 433 12222 22233333333 346777889888888877774322223346677777777778888888888888888
Q ss_pred HHhhhchhhH---HHHHHH----HHHHHhcCcchHHHHHHHHHHHHHHH---HhChhhhhhchhHHHHhhccCCC----h
Q 009359 424 LASQLGVGFF---DDKLGA----LCMQWLKDKVYSIRDAAANNVKRLAE---EFGPDWAMQHIVPQVLEMINNPH----Y 489 (536)
Q Consensus 424 l~~~~~~~~~---~~~l~~----~l~~~l~d~~~~Vr~~a~~~l~~l~~---~~~~~~~~~~i~~~l~~~~~d~~----~ 489 (536)
+++ +++++. ...+.| ++.+..+|+ .|-..+-.++..++. ..|+ .++..+|.+.+.+.-++ .
T Consensus 557 vv~-~dpef~as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el~q~~~~~g~--m~e~~iPslisil~~~~~~~~~ 631 (1005)
T KOG2274|consen 557 VVK-LDPEFAASMESKICPLTINLFLKYSEDP--QVASLAQDLFEELLQIAANYGP--MQERLIPSLISVLQLNADKAPA 631 (1005)
T ss_pred Hhc-cChhhhhhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCcccccCc
Confidence 775 333331 233444 455555565 666666666555544 4455 36789999998877554 4
Q ss_pred HHHHHHHHHHHHHhhhhChH---HHHHhHHHHHHhhc
Q 009359 490 LYRMTILQAISLLAPVMGSE---ITCSQLLPVVINAS 523 (536)
Q Consensus 490 ~~r~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~l 523 (536)
..-..++..+..+.+.-++. .+..+.+|.+.++.
T Consensus 632 ~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 632 GLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred hhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 56667788888877776543 36777788777654
No 83
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.82 E-value=7.7e-05 Score=72.74 Aligned_cols=203 Identities=12% Similarity=0.137 Sum_probs=130.4
Q ss_pred HHHHHHHHHhCCCcccc---chHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhc-cCCCHHHHH
Q 009359 263 NQLYELCEAVGPEPTRS---DVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRS 337 (536)
Q Consensus 263 ~~l~~l~~~~~~~~~~~---~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~-~d~~~~vr~ 337 (536)
..+..+...+.++...+ .++..+..+. +..++..|.++++.++.+......+...+.++..+.... .......|.
T Consensus 169 ~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 169 ILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhH
Confidence 33444444444443322 3444544443 445589999999999999988655544455555554444 455566677
Q ss_pred HHHHHHHHhhhhh--CHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhc---------------hhHHHhhHHH
Q 009359 338 ALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---------------IDLLSQSLLP 400 (536)
Q Consensus 338 ~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---------------~~~~~~~i~~ 400 (536)
.+++.+..+.+.+ ........++..+..++.| +++...++++++.+..... .+++...++|
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 7777777776543 1112245667778888888 5678888888888765321 1234455667
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHH---HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q 009359 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 401 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (536)
.+.+..++.+...|...+.++..+.+.++...+. +.++|++++.++-++..|+.++++++..+...-
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 7777666666667777777777777777765543 457777777777777777777777777776653
No 84
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.79 E-value=2.9e-05 Score=75.66 Aligned_cols=287 Identities=14% Similarity=0.131 Sum_probs=164.0
Q ss_pred chHHHHHHHHHHHHHHhhcChhh-------H-HhhHHHHHHHHhcCc-----c--cchhhHHHhhhhhhccCCChHHHHH
Q 009359 99 ETCVRDKAVESLCRIGSQMREQD-------V-VEHFIPLVKRLAAGE-----W--FTARVSSCGLFHVAYPSAPEALKTE 163 (536)
Q Consensus 99 ~~~vr~~a~~~l~~~~~~~~~~~-------~-~~~l~~~l~~l~~~~-----~--~~~r~~a~~~l~~~~~~~~~~~~~~ 163 (536)
+...-...+.++..+........ + ...++|.+..+.... . +.+=..+..++..+...++.+..+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44455666777777665442211 1 122556555444221 1 1222355677777778888876666
Q ss_pred HHHHHHHhcC----------CCC--hHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHhh-cCcchHHHHHHHHhHH
Q 009359 164 LRTIYRQLCQ----------DDM--PMVRRSAATNLGKFAATVEAAHL---KSEIMSIFEELT-QDDQDSVRLLAVEGCG 227 (536)
Q Consensus 164 l~~~l~~ll~----------d~~--~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~l-~d~~~~vr~~a~~~l~ 227 (536)
+...+..+.- +.+ +.......-.+..+...++++.. ...++..+.++. +..++..|..+.+.++
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 6655554433 111 11233344444455555554322 234555555554 3445789999999999
Q ss_pred HhhcccCchhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCCcHHHHHHHHHhH
Q 009359 228 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAV--GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304 (536)
Q Consensus 228 ~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l 304 (536)
.+.+.++.+...+.++..+.... .......|..+...+.-+++.+ ........++..+.+++.| +++...+++++
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 99999877655556666555544 4445556666666666665543 2233344678888888888 67888999999
Q ss_pred HHHHhhcC---------------hHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHH---HHhHHHHHHHh
Q 009359 305 TKICRILN---------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSL 366 (536)
Q Consensus 305 ~~~~~~~~---------------~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~ 366 (536)
+-+....+ ++.+...++|.+.+...+.+...|.....++..+.+..+.+.+ .+.++|.+++.
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 88876421 1233345555555554444444555556666666555554332 24556666666
Q ss_pred hCCCCHHHHHHHHHhhHHHHh
Q 009359 367 LKDEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~ 387 (536)
+.-++.+++.+++.++..+..
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHH
Confidence 665556666666666555543
No 85
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.5e-05 Score=78.78 Aligned_cols=440 Identities=12% Similarity=0.073 Sum_probs=246.3
Q ss_pred ccccccccccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCc-chHHHHHHHHHHHHHHh-hcCh------
Q 009359 48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVE-ETCVRDKAVESLCRIGS-QMRE------ 119 (536)
Q Consensus 48 ~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~-~~~vr~~a~~~l~~~~~-~~~~------ 119 (536)
.+..++.+..+++|.+|+.+-++|..... .+.|.-.++.++. ++. ++.+|.+|.-.+.+.++ .+.+
T Consensus 6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~---q~~y~l~lL~Lv~---~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 6 TLANYLLQTLSPDPSVRKPAERALRSLEG---QQNYPLLLLNLVA---NGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHHhcCCCCCccCchHHHHHHHhcc---CCCchHHHHHHHh---ccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 34455556677889999999999887633 2334444443333 333 67899999999999888 4322
Q ss_pred ---hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh
Q 009359 120 ---QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA 196 (536)
Q Consensus 120 ---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 196 (536)
+.-.+.+...+..+.-+....+...-...+..+.+.=-++.++.++|.+...++..|..+-.+.+..-..+.+....
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ 159 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP 159 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc
Confidence 11233344444444444344566666667777766655678899999999988887777766666666656655443
Q ss_pred h----hhHHH--------------HHHHHHHhh--cCcchHHHHHHHHhHHHhhcc--------cCc--hhhhhhhHHHH
Q 009359 197 A----HLKSE--------------IMSIFEELT--QDDQDSVRLLAVEGCGALGKL--------LEP--QDCVAHILPVI 246 (536)
Q Consensus 197 ~----~~~~~--------------l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~--------~~~--~~~~~~l~~~l 246 (536)
+ ..+.+ ++....++. .+++...-..-...+--+++. +++ ++..+.-++.+
T Consensus 160 efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F 239 (960)
T KOG1992|consen 160 EFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAF 239 (960)
T ss_pred ccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHH
Confidence 1 11111 111111122 111211111111111112211 222 23344455666
Q ss_pred HHhcCCCC-------------HHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHH-----HHHHHHHhHHH
Q 009359 247 VNFSQDKS-------------WRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAE-----VRIAAAGKVTK 306 (536)
Q Consensus 247 ~~~~~d~~-------------~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~-----vr~~a~~~l~~ 306 (536)
.+++.-++ ..+|..+|+.+.-.+....++. +.++++...-.++.+..++ ....|++.+..
T Consensus 240 ~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~ 319 (960)
T KOG1992|consen 240 HKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTS 319 (960)
T ss_pred HHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 66554111 3578888888887776654432 1223333333444333322 33445555555
Q ss_pred HHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHH--HHhhh-hhCHHHHHHhHHHHHHHhhCCCCH-HHHHHHHHhh
Q 009359 307 ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVI--MGMAP-ILGKDATIEQLLPIFLSLLKDEFP-DVRLNIISKL 382 (536)
Q Consensus 307 ~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l--~~l~~-~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l 382 (536)
+++.-.-. .+..+ ..+-...++.+ +.+.- .-..+.|.+.-+..+-+-++..+- .-|.+|+..+
T Consensus 320 V~~r~~y~-----------~~F~~--~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlv 386 (960)
T KOG1992|consen 320 VSRRPHYA-----------ELFEG--ENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLV 386 (960)
T ss_pred HHhhhhhH-----------hhhcc--hHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHH
Confidence 54421111 11111 11212222211 11211 112334455566666666665443 4577889999
Q ss_pred HHHHhhhchhHHHhhHHHHHHHhhc------CCChHHHHHHHHHHHHHHhhhc---------------hhhHHHHHHHHH
Q 009359 383 DQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG---------------VGFFDDKLGALC 441 (536)
Q Consensus 383 ~~l~~~~~~~~~~~~i~~~l~~~~~------~~~~~~R~~a~~~l~~l~~~~~---------------~~~~~~~l~~~l 441 (536)
+.+++.+. .++...+-..+..++. +.+|.-+..++..+..++...+ .++|...++|-+
T Consensus 387 rgL~~~fe-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L 465 (960)
T KOG1992|consen 387 RGLCKNFE-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDL 465 (960)
T ss_pred HHHHHHhc-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHh
Confidence 99998873 3333333334444443 4579999999999988875421 134555666655
Q ss_pred HHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhCh
Q 009359 442 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS 508 (536)
Q Consensus 442 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~ 508 (536)
.+.=..+.+-+|..+++-+-.+-+.+|++. .-.++|.+.+.++.+...+..+|+.++.++....++
T Consensus 466 ~s~~vn~~pilka~aIKy~~~FR~ql~~~~-lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 466 LSPNVNEFPILKADAIKYIYTFRNQLGKEH-LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred ccCccccccchhhcccceeeeecccCChHH-HHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 443335566788888888877777777653 356899999999999999999999999998655443
No 86
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3e-05 Score=75.88 Aligned_cols=126 Identities=14% Similarity=0.079 Sum_probs=92.9
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhc
Q 009359 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 475 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 475 (536)
+..-|.+.+++.|+++.+|...+..+..--...|.......+ +--..+|.+..||.+|..+||.++-. ...
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~l---Lh~aVsD~nDDVrRaAVialGFVl~~------dp~ 588 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRL---LHVAVSDVNDDVRRAAVIALGFVLFR------DPE 588 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHh---hcccccccchHHHHHHHHHheeeEec------Chh
Confidence 456678888999999999998887775543333433222222 22336799999999999999988743 244
Q ss_pred hhHHHHhhccC-CChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccchhhhcc
Q 009359 476 IVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 476 i~~~l~~~~~d-~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
.+|...+++.+ -|+.||-.+..++|-.|..-|. ...+..|..+.+|++..||+-|
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~~D~~~fVRQgA 644 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLTSDPVDFVRQGA 644 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhhcChHHHHHHHH
Confidence 56666666554 4999999999999998877774 4557788888999999999865
No 87
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.74 E-value=9.3e-05 Score=74.55 Aligned_cols=146 Identities=16% Similarity=0.113 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcch
Q 009359 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVY 450 (536)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 450 (536)
+.+|..+.-+++.+|-. .+.+.+..+|.+.+-++ ...-.+|...+-+++-++..... ..+..+|.+...|.|+++
T Consensus 945 ~~vra~~vvTlakmcLa--h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLA--HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred hHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchH
Confidence 34777888888888643 45566789998887776 44577888888888777754432 356688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhh
Q 009359 451 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 522 (536)
Q Consensus 451 ~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~ 522 (536)
-||..++..|..+.+.---.| ...++=.++--+-|.+.++|.-+-.+++.+.+.-.+-+|..++...+.-+
T Consensus 1021 iVRrqt~ilL~rLLq~~~vKw-~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFGIVKW-NGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhhhc-chhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHH
Confidence 999999999999886522222 23344444444668899999999999999999888877777777665543
No 88
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=0.00037 Score=68.13 Aligned_cols=429 Identities=13% Similarity=0.118 Sum_probs=207.7
Q ss_pred HHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCCccchhccchHHH
Q 009359 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLE 92 (536)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 92 (536)
.+.+-+.|.|+..-.-|++.++.+...--.+....+ +|-+.-.-+..+.||+.+|.++-.+.+..++-.....-...+.
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~D-I~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv 193 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADD-IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIV 193 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhh-hHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHH
Confidence 344455566666555666665555322111222222 2333334456678999999888777664332111111122334
Q ss_pred hhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHH---hc---------------CcccchhhHHHhhhhhhcc
Q 009359 93 TLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL---AA---------------GEWFTARVSSCGLFHVAYP 154 (536)
Q Consensus 93 ~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l---~~---------------~~~~~~r~~a~~~l~~~~~ 154 (536)
.++.|.+-.|-.++...+..+++..+++. ..-+.+.+.++ .. .+|..+ ..++++... +
T Consensus 194 ~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~v--Kl~rlLq~~-p 269 (938)
T KOG1077|consen 194 HLLDDQHMGVVTAATSLIEALVKKNPESY-KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV--KLLRLLQIY-P 269 (938)
T ss_pred HHhCccccceeeehHHHHHHHHHcCCHHH-hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHH--HHHHHHHhC-C
Confidence 45556665555566666666666655432 21122222211 11 111111 222222222 2
Q ss_pred CCCh-HHHHHHHH---HHHHhcCCC----C---hHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhcCcchHHHHHH
Q 009359 155 SAPE-ALKTELRT---IYRQLCQDD----M---PMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLA 222 (536)
Q Consensus 155 ~~~~-~~~~~l~~---~l~~ll~d~----~---~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a 222 (536)
...+ ..+..+.+ .++...+++ + ..+..+.+.-...++.+++. +.....-+..+-+++++.+..+|..|
T Consensus 270 ~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLa 349 (938)
T KOG1077|consen 270 TPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLA 349 (938)
T ss_pred CCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhh
Confidence 2111 23333333 333332321 1 12223333333444444444 34445566677778888888888888
Q ss_pred HHhHHHhhcccCchhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHH
Q 009359 223 VEGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAA 301 (536)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~ 301 (536)
++.+..++..-...+.+.+-...+...++ +++..+|..++..|..++..-. ...++.-+++.+...++.+|+..+
T Consensus 350 LEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 350 LESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREEIV 425 (938)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHHHH
Confidence 88888777642222222333445555555 6778888888888888775321 345777777888778888888777
Q ss_pred HhHHHHHhhcChH--HHHHhhhHHHHHhc---cCCCHHHHHHHHHHHHHhhhh-hCHHHHHHhHHHHHHHhhCCC--CHH
Q 009359 302 GKVTKICRILNPE--LAIQHILPCVKELS---SDSSQHVRSALATVIMGMAPI-LGKDATIEQLLPIFLSLLKDE--FPD 373 (536)
Q Consensus 302 ~~l~~~~~~~~~~--~~~~~i~~~l~~l~---~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~l~~~l~~~l~d~--~~~ 373 (536)
--..-+++.+..+ ++.+.++..+.-.- +|+-| .++++. .+.+......-..+...|+.+ .+.
T Consensus 426 lKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW----------~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~ 495 (938)
T KOG1077|consen 426 LKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVW----------YRVVQIVVNNEDLQGYAAKRLFEYLQKPACHEN 495 (938)
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHH----------HHhheeEecchhhhHHHHHHHHHHHhhhHHHHH
Confidence 7777777655443 44444444443221 12112 111111 112222222223333333322 112
Q ss_pred HHHHHHHhhHHHHhhhchhH--HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchH
Q 009359 374 VRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYS 451 (536)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 451 (536)
+-+.+.-.||.++..+..+. -....+..+.+-+..-+...|...+...-.+.... + ...+.+...+....+-.+.+
T Consensus 496 mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-P-Ei~~~v~~vFq~~~n~~D~E 573 (938)
T KOG1077|consen 496 MVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-P-EIKSNVQKVFQLYSNLIDVE 573 (938)
T ss_pred HHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-h-hhhHHHHHHHHhhcccCCHH
Confidence 22233334444444433211 11223344444444445556666665555555433 2 22344555555555556778
Q ss_pred HHHHHHHHHHH
Q 009359 452 IRDAAANNVKR 462 (536)
Q Consensus 452 Vr~~a~~~l~~ 462 (536)
+++.|++-+.-
T Consensus 574 lQqRa~EYLql 584 (938)
T KOG1077|consen 574 LQQRAVEYLQL 584 (938)
T ss_pred HHHHHHHHHHH
Confidence 88888776643
No 89
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.71 E-value=2.2e-07 Score=68.71 Aligned_cols=87 Identities=18% Similarity=0.098 Sum_probs=65.2
Q ss_pred hhHHHhhhhhhccCCCh---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcch
Q 009359 142 RVSSCGLFHVAYPSAPE---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQD 216 (536)
Q Consensus 142 r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~ 216 (536)
|..+...++.+...++. ++.+++++.++.++.|++++||++|+++|.++++....+ .+.+++++.+.++..|.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 44444444444333333 367888999999999999999999999999999887764 3467888999999999999
Q ss_pred HHHHHHHHhHHHh
Q 009359 217 SVRLLAVEGCGAL 229 (536)
Q Consensus 217 ~vr~~a~~~l~~l 229 (536)
.||.+| +.|..+
T Consensus 83 ~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 83 NVRSAA-ELLDRL 94 (97)
T ss_pred hHHHHH-HHHHHH
Confidence 998766 544443
No 90
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.1e-05 Score=66.25 Aligned_cols=341 Identities=13% Similarity=0.112 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH--------HHHHHHHHHHHhcCCC
Q 009359 104 DKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--------LKTELRTIYRQLCQDD 175 (536)
Q Consensus 104 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--------~~~~l~~~l~~ll~d~ 175 (536)
..++.+|..+.+...+....+.++|.+..-...++..++..++.-++.+.+.++.. +-..+++.+..++..+
T Consensus 61 tlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred hhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 34777888888877776777788888887777777889999999888888877632 2356888899999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhh--hhhHHHHHH--HHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHH
Q 009359 176 MPMVRRSAATNLGKFAATVEA--AHLKSEIMS--IFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVN 248 (536)
Q Consensus 176 ~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~--~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~ 248 (536)
+.+|..+|.+.+..++..-.. ..+...+++ .+.++....++.+|....+.+..+....+. +.....++..+..
T Consensus 141 ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLea 220 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEA 220 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHH
Confidence 999999999999998753111 011111111 111222233445566666665555443322 1123345555555
Q ss_pred hcCC-CCHHHHHHHHHHHHHHHHHh-CCCcc-ccchHHHHHHhcC--CCcHHHHHHHHHhHHHHHhhcChHHHHH-----
Q 009359 249 FSQD-KSWRVRYMVANQLYELCEAV-GPEPT-RSDVVPAYVRLLR--DNEAEVRIAAAGKVTKICRILNPELAIQ----- 318 (536)
Q Consensus 249 ~~~d-~~~~vR~~~~~~l~~l~~~~-~~~~~-~~~l~~~l~~ll~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~----- 318 (536)
-++. ++.-||..+++....++..- |.++. .+.++..+.+.+. |.+|--+-. ++..+++.+|++.+.+
T Consensus 221 ElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr---almgfgkffgkeaimdvseea 297 (524)
T KOG4413|consen 221 ELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR---ALMGFGKFFGKEAIMDVSEEA 297 (524)
T ss_pred HhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH---HHHHHHHHhcchHHhhcCHHH
Confidence 4443 67778999999988888653 33332 2346666666553 444443333 3444444455443221
Q ss_pred ---hhh---HHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHH-H---HhHHHHHHHhhCCCCH-HHHHHHHHhhHHHHh
Q 009359 319 ---HIL---PCVKELSSDSSQHVRSALATVIMGMAPILGKDAT-I---EQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQ 387 (536)
Q Consensus 319 ---~i~---~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-~---~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~ 387 (536)
.++ .-...+.+..++....+++.++|.+++....... . +.-...++....|.+. .-...++.++..+..
T Consensus 298 icealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 298 ICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 111 1112334556677778888888888765432221 1 1111222222223322 233456666666654
Q ss_pred hhchhHHHhhHHHHHHHhhcCCC--hHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 009359 388 VIGIDLLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (536)
Q Consensus 388 ~~~~~~~~~~i~~~l~~~~~~~~--~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (536)
.+.... +-..|.. .+.|.....+...-. .+.+ +.++...++.+.+++|.++.+.+..+..
T Consensus 378 elrlkp----------eqitDgkaeerlrclifdaaaqst-kldP-------leLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 378 ELRLKP----------EQITDGKAEERLRCLIFDAAAQST-KLDP-------LELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred cccCCh----------hhccccHHHHHHHHHHHHHHhhcc-CCCh-------HHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 322110 0011211 222222222221100 1111 2346667788899999999999888764
No 91
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.69 E-value=5.6e-06 Score=70.92 Aligned_cols=222 Identities=20% Similarity=0.145 Sum_probs=109.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC--CcHHHHHHHHHhHHHHHhhcChHHHHHhh
Q 009359 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPELAIQHI 320 (536)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~i 320 (536)
+..+.+...|++...+...+.++|+.. ..+.+|.+...+.| ..|-||..|..+++.+.. +..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~ 101 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES 101 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence 444444555555455555555555543 23455666665544 345566666666666642 344
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhhhhh--CHH----HHH---------HhHHHHHHHhhCCCCH--HHHHHHHHhhH
Q 009359 321 LPCVKELSSDSSQHVRSALATVIMGMAPIL--GKD----ATI---------EQLLPIFLSLLKDEFP--DVRLNIISKLD 383 (536)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~~----~~~---------~~l~~~l~~~l~d~~~--~vr~~a~~~l~ 383 (536)
.+.+.+..+|+-..||..+..++..+--.- +.. .+. ..-+.-+-..+.|... .-|..+.-.+.
T Consensus 102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LR 181 (289)
T KOG0567|consen 102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLR 181 (289)
T ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhh
Confidence 455555556666666665444444431110 000 000 0001111111222211 11223332332
Q ss_pred HHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCc--chHHHHHHHHHHH
Q 009359 384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK--VYSIRDAAANNVK 461 (536)
Q Consensus 384 ~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~Vr~~a~~~l~ 461 (536)
+++. +.-+..|.+-+.+.+.-.|..+..+++++- .+.-+|.+.+.|.|. .+.||-.|+++||
T Consensus 182 n~g~--------EeaI~al~~~l~~~SalfrhEvAfVfGQl~--------s~~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 182 NIGT--------EEAINALIDGLADDSALFRHEVAFVFGQLQ--------SPAAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred ccCc--------HHHHHHHHHhcccchHHHHHHHHHHHhhcc--------chhhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 2221 333444555555556666766666666543 122344455555443 4557777777777
Q ss_pred HHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 462 RLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 462 ~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
.+. .+..++.|.++..|+..-+|+.+.-++.-...
T Consensus 246 aIa--------~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 246 AIA--------DEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hhc--------CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 765 24566677777777777777777766665443
No 92
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.68 E-value=1e-07 Score=70.36 Aligned_cols=83 Identities=27% Similarity=0.372 Sum_probs=64.6
Q ss_pred HHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCc
Q 009359 218 VRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNE 293 (536)
Q Consensus 218 vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~ 293 (536)
.|.+++.+++.++-.++. ..+.+.++|.+..++.|++|+||..++++|.++++..+.+.. .+.+++.+.+++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 367777777777776665 456778888888999999999999999999999887765542 3467777788888888
Q ss_pred HHHHHHH
Q 009359 294 AEVRIAA 300 (536)
Q Consensus 294 ~~vr~~a 300 (536)
+.||.+|
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 8888776
No 93
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.66 E-value=0.00013 Score=68.05 Aligned_cols=451 Identities=13% Similarity=0.086 Sum_probs=263.9
Q ss_pred HhcChhHHHHHHHhhhHHHHHHhhChH---hhhhccc--------ccccc--ccCCchHHHHHHHHHHhchhc-------
Q 009359 17 ELKNDDIQLRLNSIRRLSTIARALGEE---RTRKELI--------PFLSE--NNDDDDEVLLAMAEELGVFIP------- 76 (536)
Q Consensus 17 ~l~s~~~~~R~~a~~~l~~~~~~~~~~---~~~~~l~--------~~l~~--~~d~~~~vr~~a~~~l~~l~~------- 76 (536)
.+++...++|..|+..+......+... .+|..++ |+++. ++|.++.-|..+.+.+..+..
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls 83 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLS 83 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHH
Confidence 356788899999998877665544321 1122232 55554 789999998887776655432
Q ss_pred ---ccCCccch-------hccch----HHHhhhcCcchHHHHHHHHHHHHHHhhcChhhH----HhhHHHHHHHHhcCcc
Q 009359 77 ---YVGGLEYA-------NVLLP----PLETLCTVEETCVRDKAVESLCRIGSQMREQDV----VEHFIPLVKRLAAGEW 138 (536)
Q Consensus 77 ---~~~~~~~~-------~~ll~----~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~l~~~~~ 138 (536)
..++..+. ..+.. ++..+..+..+.+-...++++..+....+-+.. ...+..-++.+.++.+
T Consensus 84 ~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d 163 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD 163 (728)
T ss_pred HHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 12222221 11111 122333455666777888999999887765433 2334555667777888
Q ss_pred cchhhHHHhhhhhhccCCC-------------------------hHHHHHHH--HHHHHh--------------------
Q 009359 139 FTARVSSCGLFHVAYPSAP-------------------------EALKTELR--TIYRQL-------------------- 171 (536)
Q Consensus 139 ~~~r~~a~~~l~~~~~~~~-------------------------~~~~~~l~--~~l~~l-------------------- 171 (536)
+.+|.++..+++.+..... ++.++++- +.+.++
T Consensus 164 ~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~ 243 (728)
T KOG4535|consen 164 VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCIS 243 (728)
T ss_pred CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeee
Confidence 8999998887777643110 01111110 000110
Q ss_pred ------------------cCC--CChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhh
Q 009359 172 ------------------CQD--DMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (536)
Q Consensus 172 ------------------l~d--~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 230 (536)
+.. .-..+|-.|.+.|..++.+++- ..+.-.+...+...+.+..+.++..+..++..++
T Consensus 244 i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg 323 (728)
T KOG4535|consen 244 IVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELG 323 (728)
T ss_pred eeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHH
Confidence 000 0134788888888888887765 2444567777778889999999999999998887
Q ss_pred cccCch----hh-hhhhHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCCc
Q 009359 231 KLLEPQ----DC-VAHILPVIVN----------FSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNE 293 (536)
Q Consensus 231 ~~~~~~----~~-~~~l~~~l~~----------~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~ 293 (536)
..+..+ .. .+.....+.. ...+.......+.|..+.++...-.. ..-.....+.|+..+.|..
T Consensus 324 ~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~ 403 (728)
T KOG4535|consen 324 TGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSK 403 (728)
T ss_pred HHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchH
Confidence 655421 11 1111111111 11122334566777777776543211 1112357788888888654
Q ss_pred -HHHHHHHHHhHHHHHhhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC-----HHHH----HHhHH
Q 009359 294 -AEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG-----KDAT----IEQLL 360 (536)
Q Consensus 294 -~~vr~~a~~~l~~~~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-----~~~~----~~~l~ 360 (536)
.-||.+|+.+++.+.-+-+.. .+.......+...+.|+...+|..++.+++.|...+- .+.+ ...++
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll 483 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL 483 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH
Confidence 347778888877665443322 2233444555566678888999999999998865431 1112 22222
Q ss_pred HHHHHhhC--C-CCHHHHHHHHHhhHHHHhhhch-------hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh--
Q 009359 361 PIFLSLLK--D-EFPDVRLNIISKLDQVNQVIGI-------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-- 428 (536)
Q Consensus 361 ~~l~~~l~--d-~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~-- 428 (536)
..++..-. | .+..||..++++++++...+.+ +.+...+...+.......+..+|=.++.+++.+.+.-
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 22222211 1 2357899999999988776542 1111112222222223446778889999999987643
Q ss_pred --chhhHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHh
Q 009359 429 --GVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 429 --~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~ 467 (536)
....+...+++.+..++.| .+..||..|+.++..-.+..
T Consensus 564 ~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re 605 (728)
T KOG4535|consen 564 PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE 605 (728)
T ss_pred cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence 2333567788888887754 56779999999987665543
No 94
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.66 E-value=3.4e-06 Score=82.66 Aligned_cols=231 Identities=16% Similarity=0.180 Sum_probs=169.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhcc-CCC
Q 009359 254 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSS 332 (536)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~-d~~ 332 (536)
++.-+....+.|..+...++.......++|.+...+.+.. ..-..+-.+-.+.+......+...++|.+....+ ..+
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 4445666777777777777766666678888887774432 1122222333444444445566777888877666 556
Q ss_pred HHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhh-cCCCh
Q 009359 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHW 411 (536)
Q Consensus 333 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~~~~~ 411 (536)
..++...++-...|.+....+++.+.++|.+...++|.+..++..++..+..+.+.+.-..+.+.++|.+..+. ...+-
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 67778888888889999999999999999999999999999999999999999999988888899999998874 35578
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--hChhhhhhchhHHHHhhccCC
Q 009359 412 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE--FGPDWAMQHIVPQVLEMINNP 487 (536)
Q Consensus 412 ~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~~~~d~ 487 (536)
.+|..++.+++.+++.+......+.+.|++ +..+-.++.+..........+.-. .|.+...+.++|.+..+...+
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~-~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPIL-KCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 899999999999998887766667666654 445455566666666665554332 234566688999998876655
No 95
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.65 E-value=2.1e-06 Score=83.97 Aligned_cols=238 Identities=15% Similarity=0.236 Sum_probs=181.1
Q ss_pred cHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC-CCC
Q 009359 293 EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEF 371 (536)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~ 371 (536)
++.-+..-.++|..+...++.......++|.+..-+.+. ..--...-.+..+++......|...++|.+...++ ...
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 445677778888888888888877888888887665432 11222233444555555666778888898888887 455
Q ss_pred HHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH-hcCcch
Q 009359 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LKDKVY 450 (536)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~ 450 (536)
..++...++.++.+.+....+.+.+.++|.|..-+++.+..+...++..++.+++.++-.+..+.++|-+..+ +...+.
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 6788888999999999999999999999999999999999999999999999999999888889999988775 567788
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhh--ChHHHHHhHHHHHHhhcCCccc
Q 009359 451 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM--GSEITCSQLLPVVINASKDSES 528 (536)
Q Consensus 451 ~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~--~~~~~~~~~~~~l~~~l~d~~~ 528 (536)
.|+..++-|++.+++.+......+.+.|.+.. .+-+++.+....+.+...+.-.. |.+...++++|.+.-+...+.-
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccc
Confidence 99999999999999887655444555555544 44456677777777777765433 3466788899988887776665
Q ss_pred hhhhc
Q 009359 529 VAVTY 533 (536)
Q Consensus 529 ~vr~~ 533 (536)
++-++
T Consensus 523 ~~~Qy 527 (700)
T KOG2137|consen 523 NGEQY 527 (700)
T ss_pred cHHHH
Confidence 55444
No 96
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.4e-05 Score=76.52 Aligned_cols=282 Identities=17% Similarity=0.118 Sum_probs=169.8
Q ss_pred HHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHH
Q 009359 144 SSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAV 223 (536)
Q Consensus 144 ~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 223 (536)
.|...++.+...-+.+..+.+...|.. .+++.||+.++-.||-.+-.-. ..++...+...+...+.-.-++|-
T Consensus 398 GalyAlGLIhA~hG~~~~~yL~~~Lk~---~~~e~v~hG~cLGlGLa~mGSa----~~eiYe~lKevLy~D~AvsGEAAg 470 (929)
T KOG2062|consen 398 GALYALGLIHANHGRGITDYLLQQLKT---AENEVVRHGACLGLGLAGMGSA----NEEIYEKLKEVLYNDSAVSGEAAG 470 (929)
T ss_pred chhhhhhccccCcCccHHHHHHHHHHh---ccchhhhhhhhhhccchhcccc----cHHHHHHHHHHHhccchhhhhHHH
Confidence 455555655555444433333333332 3478899999888876543221 245666677666655544445555
Q ss_pred HhHHHhhcccCchhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHH
Q 009359 224 EGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAG 302 (536)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~ 302 (536)
-+++-+.-..... ..+.-+..... ....++.+..+-.+.-+. +|. .+..-|.+.+++.|.+|-.|...+.
T Consensus 471 i~MGl~mlGt~~~----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~--ygr---qe~Ad~lI~el~~dkdpilR~~Gm~ 541 (929)
T KOG2062|consen 471 IAMGLLMLGTANQ----EAIEDMLTYAQETQHEKIIRGLAVGIALVV--YGR---QEDADPLIKELLRDKDPILRYGGMY 541 (929)
T ss_pred HhhhhHhhCcCcH----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHH--hhh---hhhhHHHHHHHhcCCchhhhhhhHH
Confidence 5555544322222 22222222222 234455555544444332 232 2345688889999999999998877
Q ss_pred hHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC-CCCHHHHHHHHHh
Q 009359 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISK 381 (536)
Q Consensus 303 ~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~ 381 (536)
+++---...|+......+++ -..+|.|..||++|+.+||.++-. .+..+|..+.+|. +-++.||..++.+
T Consensus 542 t~alAy~GTgnnkair~lLh---~aVsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~A 612 (929)
T KOG2062|consen 542 TLALAYVGTGNNKAIRRLLH---VAVSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMA 612 (929)
T ss_pred HHHHHHhccCchhhHHHhhc---ccccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHH
Confidence 76644333344333232222 236899999999999999987643 2344555556554 4578999999999
Q ss_pred hHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH--HHHHHHHHHHHhcCcchHHHH
Q 009359 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSIRD 454 (536)
Q Consensus 382 l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr~ 454 (536)
+|-.|..-|. ...+..|..+.+|+..-||+.|+-++..|.-+..+... ...+...+.+.+.|+....-.
T Consensus 613 LGIaCAGtG~----~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~a 683 (929)
T KOG2062|consen 613 LGIACAGTGL----KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMA 683 (929)
T ss_pred HhhhhcCCCc----HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHH
Confidence 9999887775 45667777888899999999999988877654433221 233445566666776665433
No 97
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=0.0011 Score=68.92 Aligned_cols=135 Identities=15% Similarity=0.124 Sum_probs=97.5
Q ss_pred HHhhHHHHHHHhhcC----CChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHhC
Q 009359 394 LSQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFG 468 (536)
Q Consensus 394 ~~~~i~~~l~~~~~~----~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~ 468 (536)
+...+.|.+.+..+. .++.++.+|--+++.+.. ++.+ |...-+|.++..+. .+++.||..+.-++|.++-.++
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~-fces~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHH-HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 345677777777754 357788888888887653 2333 44555677777776 7888899999999998887665
Q ss_pred hhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHH-HHhHHHHHHhhcCCccchhhhccC
Q 009359 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT-CSQLLPVVINASKDSESVAVTYSH 535 (536)
Q Consensus 469 ~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~-~~~~~~~l~~~l~d~~~~vr~~a~ 535 (536)
. ..+.+-+.|-..++|++..||.+|+-.+.++.-. +.+ ..-.++.+-.|+.||++.|+.+|+
T Consensus 994 n--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 994 N--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN---DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred c--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 4 4577888888889999999999999999887532 100 111256677788999999988876
No 98
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.62 E-value=5.5e-06 Score=70.18 Aligned_cols=111 Identities=21% Similarity=0.206 Sum_probs=73.1
Q ss_pred hHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHH
Q 009359 216 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 295 (536)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~ 295 (536)
+.+|..++.+++.++..++. ..+..+|.+...+.|+++.||..++..+..+... +.-.....++..+..++.|++++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 56677777777777665553 3555667777777777778888777777777643 21222335556677777888888
Q ss_pred HHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhcc
Q 009359 296 VRIAAAGKVTKICRILNPELAIQHILPCVKELSS 329 (536)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~ 329 (536)
||..|...+..+.....+..+.+.+.+.+..+..
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 8888888888887765555555555555554443
No 99
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.61 E-value=2.3e-05 Score=77.89 Aligned_cols=403 Identities=13% Similarity=0.071 Sum_probs=227.0
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHHHhhcCh-hhHHhhHHHHHHHHhcCc-ccchhhHHHhhhhhhccCCChHHHHHHHH
Q 009359 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRE-QDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALKTELRT 166 (536)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 166 (536)
|+|..+ .+++..||...++.+.++.+.+.. ..+.=-+-.++.+..+.+ +..+|..+...+..-.++++.+.+.+++|
T Consensus 27 plLlkl-~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~llP 105 (501)
T PF13001_consen 27 PLLLKL-ASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERRELLP 105 (501)
T ss_pred HHHHHh-cCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 344444 567889999999999999887754 333333455666666555 57789999888888899999988888999
Q ss_pred HHHHhcCCCChH---HHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhh--------
Q 009359 167 IYRQLCQDDMPM---VRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG-------- 230 (536)
Q Consensus 167 ~l~~ll~d~~~~---vr~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-------- 230 (536)
.+.+.+...... .....+..+.-+++.... .......-+.-...+.|... ........+.+.
T Consensus 106 ~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~l~~~~~~~~~l~~~~~~ 183 (501)
T PF13001_consen 106 SLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCD--DVFLAPWFSKFLLLQPNRAY 183 (501)
T ss_pred HHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHH--HHHcchhhcccccccccccc
Confidence 988888632211 111112222222222111 00000000000011111000 000000000000
Q ss_pred --cccCchhhhhhhHH-HHHHhcCCC--------CHHHHHHHHHHHHHHHHHhCCCcccc-chHHHHHHhcCCCcHHHHH
Q 009359 231 --KLLEPQDCVAHILP-VIVNFSQDK--------SWRVRYMVANQLYELCEAVGPEPTRS-DVVPAYVRLLRDNEAEVRI 298 (536)
Q Consensus 231 --~~~~~~~~~~~l~~-~l~~~~~d~--------~~~vR~~~~~~l~~l~~~~~~~~~~~-~l~~~l~~ll~d~~~~vr~ 298 (536)
...... ..+.+-. ......... -.++|..+.+.+. ...+.+ ..++.++-.-.|++.+|-.
T Consensus 184 ~~pgl~~~-~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~-------sg~f~d~~~~~~~liAsad~~~~V~~ 255 (501)
T PF13001_consen 184 ACPGLSPA-DPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLA-------SGFFPDEERFPPLLIASADSNSSVSD 255 (501)
T ss_pred CCCCCCCC-CCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHH-------hcCCCcHhHHhheeeEEeCCcchHHH
Confidence 000000 0000101 001111111 1124444444433 222323 4556566666888899999
Q ss_pred HHHHhHHHHHhhcChHHHHHhhhHHHH--Hhcc-----CCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCC-
Q 009359 299 AAAGKVTKICRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE- 370 (536)
Q Consensus 299 ~a~~~l~~~~~~~~~~~~~~~i~~~l~--~l~~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~- 370 (536)
.|-..+..+...+..+.+.+.++..+. .... --++.+|..++..+..- .......+..+.++...+.++
T Consensus 256 ~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS---~~Aa~~~~~~~~i~~~~l~~~~ 332 (501)
T PF13001_consen 256 RAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS---VIAATSFPNILQIVFDGLYSDN 332 (501)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh---HHHHhCCccHHHHHhccccCCc
Confidence 998888888777777777777777666 2111 13466776666555442 222223456777788888877
Q ss_pred -CHHHHHHHHHhh---HHHHhhhchhHH---HhhHHHHHHHhhc--------CCChHHHHHHHHHHHHHHhhhchhhHH-
Q 009359 371 -FPDVRLNIISKL---DQVNQVIGIDLL---SQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGVGFFD- 434 (536)
Q Consensus 371 -~~~vr~~a~~~l---~~l~~~~~~~~~---~~~i~~~l~~~~~--------~~~~~~R~~a~~~l~~l~~~~~~~~~~- 434 (536)
+..+|..++..+ ......++...+ .+.+...+....+ ..+...|..+.++++.++.....-+..
T Consensus 333 ~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d 412 (501)
T PF13001_consen 333 TNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD 412 (501)
T ss_pred cccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc
Confidence 668888888888 777666665433 2334444444442 235679999999999999876654322
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhh-----hhchhHHH-HhhccCCChHHHHHHHHHHHHHhhh
Q 009359 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQV-LEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 435 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-----~~~i~~~l-~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
-.++..++..+.++.+++|.+.-++|+.+...+..... ....+..+ .....+....+|..|+++...+...
T Consensus 413 ~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf 489 (501)
T PF13001_consen 413 LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPF 489 (501)
T ss_pred HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCc
Confidence 23555667777999999999999999999988764321 11122222 2234456778999999988887654
No 100
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.61 E-value=3.1e-07 Score=68.06 Aligned_cols=85 Identities=31% Similarity=0.412 Sum_probs=56.5
Q ss_pred HHHHHhc-CCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHH
Q 009359 166 TIYRQLC-QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (536)
Q Consensus 166 ~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (536)
+.+.+.+ +|+++.+|..++.+|+.+.. +..+|.+.++++|+++.||..|+.+++.++. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 4455555 77778888877777775432 3566777777777777888888877777642 44666
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHH
Q 009359 245 VIVNFSQD-KSWRVRYMVANQLY 266 (536)
Q Consensus 245 ~l~~~~~d-~~~~vR~~~~~~l~ 266 (536)
.+.+.+.+ +++.||..++.+|+
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 66665554 45666777777664
No 101
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.58 E-value=9.2e-05 Score=75.19 Aligned_cols=371 Identities=14% Similarity=0.106 Sum_probs=214.8
Q ss_pred HHHhhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcchHH
Q 009359 144 SSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSV 218 (536)
Q Consensus 144 ~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~v 218 (536)
.+..++..+.....-+ ....+++.|..+++..+.++...+..+|..++-.... ......++|.+.+++..++..+
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 4455566666655433 4566888999999999999999999999888743222 2334568888999999988889
Q ss_pred HHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhc-CCCc
Q 009359 219 RLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRLL-RDNE 293 (536)
Q Consensus 219 r~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll-~d~~ 293 (536)
+..++..|-.++..-.- .-....++|.+..++.+++ .|..+...|..++..-. ..+...+.+|.+.+++ ..++
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 99999999888753221 2334568899999998765 45667777777753211 1111235677777754 4455
Q ss_pred HHHHHHHHHhHHHHHhhcChH--HHHHhhhHHHHHh-ccCCCHHHHHHHHHHHHHhhhhhCH--HHHHHhHHHHHHHhhC
Q 009359 294 AEVRIAAAGKVTKICRILNPE--LAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLK 368 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~--~~~~~i~~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~ 368 (536)
+.+...++..+..++..-... ......++.+... .+..++ ..++.+..++..-|. ..|.+.+.+.. ..+.
T Consensus 426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~-~~v~ 500 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGDLA-KIVS 500 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHHHH-HHhh
Confidence 566555444444443321111 0111223333222 222222 223444455443321 22333333333 3343
Q ss_pred C-CCHHHHHHHHHhhHHHHh-hhchhHHH--hhHHHHHHHhhcCCC--hHHHHHHHHHHHHHHhhhchhh--HHHHHHHH
Q 009359 369 D-EFPDVRLNIISKLDQVNQ-VIGIDLLS--QSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKLGAL 440 (536)
Q Consensus 369 d-~~~~vr~~a~~~l~~l~~-~~~~~~~~--~~i~~~l~~~~~~~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~ 440 (536)
. ++++....++.+++++.- .+....+. ..++|.+.+.+..+. ..+...++.+++.++..-.... ....+++.
T Consensus 501 ~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~ 580 (708)
T PF05804_consen 501 SGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPT 580 (708)
T ss_pred cCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHH
Confidence 3 344544444444444421 11222222 368899999887553 4567777777777664222111 23345666
Q ss_pred HHHHhcCc--chHHHHHHHHHHHHHHHHhChh-h--hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhh-------Ch
Q 009359 441 CMQWLKDK--VYSIRDAAANNVKRLAEEFGPD-W--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM-------GS 508 (536)
Q Consensus 441 l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~-~--~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~-------~~ 508 (536)
+..++... +.+.-...+.++.++..+-... . ....+...+..+++|+|..+|..+=.++.-++..- ..
T Consensus 581 Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~ 660 (708)
T PF05804_consen 581 LIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRR 660 (708)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhH
Confidence 77766533 3566677778888777652211 1 12567788999999999999999988888776542 22
Q ss_pred HH---HHHhHHHHHHh
Q 009359 509 EI---TCSQLLPVVIN 521 (536)
Q Consensus 509 ~~---~~~~~~~~l~~ 521 (536)
+. +..+++.++..
T Consensus 661 ~kF~~hN~~WLe~v~~ 676 (708)
T PF05804_consen 661 EKFRWHNAQWLEMVES 676 (708)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 22 35566776654
No 102
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.54 E-value=0.00011 Score=74.59 Aligned_cols=361 Identities=15% Similarity=0.136 Sum_probs=211.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc--hhhhh
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVA 240 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~ 240 (536)
...+..++...+.-.| .+...|.+++.....+ .....+++.+.+.++.++.++...++..|..++-.-.. .-...
T Consensus 252 ~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~ 330 (708)
T PF05804_consen 252 LKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES 330 (708)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3455555555555555 5667788887654332 33456888888999988889998888888888643222 22345
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH--HH
Q 009359 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LA 316 (536)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~ 316 (536)
.+++.+.+++..++..++..+...|.+++..- ........++|.+..+++|++ .|..++..+..++..-... ..
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence 68999999999999999999999999886321 122234468899999998764 5666777777776532111 11
Q ss_pred HHhhhHHHHHh-ccCCCHHHHHHHHHHHHHhhhhhCH-HH-HHHhHHHHHHH-hhCCCCHHHHHHHHHhhHHHHhhhchh
Q 009359 317 IQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGK-DA-TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGID 392 (536)
Q Consensus 317 ~~~i~~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (536)
....+|.+.++ .+.++.++...++..+..++..-.. +. ....-++.++. .++..++- .++.+.++...=|..
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPL 484 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchH
Confidence 23445666554 4445666655555555554432111 11 11122232222 33333322 233444444332221
Q ss_pred H-HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchh----h-HH-HHHHHHHHHHhcCc--chHHHHHHHHHHHHH
Q 009359 393 L-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----F-FD-DKLGALCMQWLKDK--VYSIRDAAANNVKRL 463 (536)
Q Consensus 393 ~-~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~-~~-~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l 463 (536)
. .....+..+......++ --...+++++.++...-++ . .. ..++|.+.+.+... ..++...++-.+|.+
T Consensus 485 k~~f~~~i~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 485 KELFVDFIGDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred HHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 1 11122222333333332 1245666666666533221 1 11 25788888888644 336888888888887
Q ss_pred HHHhCh--hhhhhchhHHHHhhccCC--ChHHHHHHHHHHHHHhhhhC-hHHH--HHhHHHHHHhhcCCccchhhhcc
Q 009359 464 AEEFGP--DWAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMG-SEIT--CSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 464 ~~~~~~--~~~~~~i~~~l~~~~~d~--~~~~r~~~~~~l~~l~~~~~-~~~~--~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
+..-.. -.....+++.|.++++.. |...-..++.++.++...-. .+.+ ..++...++.++.|+++.||.+|
T Consensus 563 a~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~ 640 (708)
T PF05804_consen 563 ASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVC 640 (708)
T ss_pred HCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHH
Confidence 743211 122367888888887653 56666777777777665422 1222 34677899999999999999876
No 103
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.54 E-value=3.5e-05 Score=66.16 Aligned_cols=219 Identities=16% Similarity=0.187 Sum_probs=139.3
Q ss_pred HHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCCCccccchH
Q 009359 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (536)
Q Consensus 205 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 282 (536)
..+.+...|++...+.....+++.... ...+|.+...+.|. .+-||..++++||.++ .+...
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~ 102 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESL 102 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhH
Confidence 333344445455556666666766543 45667777766653 6778999988888876 24567
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHH----------------HHHhccCCCH--HHHHHHHHHHH
Q 009359 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC----------------VKELSSDSSQ--HVRSALATVIM 344 (536)
Q Consensus 283 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~----------------l~~l~~d~~~--~vr~~a~~~l~ 344 (536)
+.+.++.+|+...||..+..++..+--.-+.... ....|. +...+.|.+. .-|..+.-.+.
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LR 181 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLR 181 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhh
Confidence 8888888888888888877777665322111000 001111 1111111110 11222222222
Q ss_pred HhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCC--ChHHHHHHHHHHH
Q 009359 345 GMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIP 422 (536)
Q Consensus 345 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~--~~~~R~~a~~~l~ 422 (536)
.+. . +.-+..+...+.+++.-.|..++-++|++.. +.-+|.+.+.+.+. +..+|..++++|+
T Consensus 182 n~g----~----EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 182 NIG----T----EEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred ccC----c----HHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 221 1 2345567778888888999999999998864 56677777777654 6889999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 009359 423 LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (536)
Q Consensus 423 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (536)
.++ .+.-++++.+++.|+.+-||+.+.-++.-+-
T Consensus 246 aIa--------~e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 246 AIA--------DEDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhc--------CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 986 3346778999999999999999888876554
No 104
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.54 E-value=1.4e-05 Score=70.93 Aligned_cols=190 Identities=9% Similarity=0.084 Sum_probs=127.8
Q ss_pred hHHHHHHhcC-CCcHHHHHHHHHhHHHHHhhcChHHHH--HhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHH
Q 009359 281 VVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAI--QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357 (536)
Q Consensus 281 l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~~~~--~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 357 (536)
-+..++.+|+ ..+|.++..+..+++..+.+-..+.+. -..++.+..++.++++.+|..|+.++..++.........+
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 3455666665 457888888888888876543333222 2456888888999999999999999998876544333333
Q ss_pred hHHHHHHHhh-CC-CCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc--hhhH
Q 009359 358 QLLPIFLSLL-KD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFF 433 (536)
Q Consensus 358 ~l~~~l~~~l-~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~--~~~~ 433 (536)
..++.+.... .+ -+..++.++++.|..+.-.-....+....+|.+..++..++..+|..+++.+..++..-. .+.+
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll 172 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELL 172 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3444444433 32 356888888888888854332233345567788888888899999999999988876432 2333
Q ss_pred HHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHhChh
Q 009359 434 DDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD 470 (536)
Q Consensus 434 ~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~ 470 (536)
..+.++.++.+++.+ ..++-..++..+..+..++.++
T Consensus 173 ~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 173 SAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 344556666777654 5677888888888887776543
No 105
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.53 E-value=7.6e-07 Score=65.93 Aligned_cols=55 Identities=29% Similarity=0.410 Sum_probs=27.0
Q ss_pred HHHHhh-CCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 009359 362 IFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (536)
Q Consensus 362 ~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l 424 (536)
.+.+.+ +|+++.+|..++.+++.+.. +..+|.+..+++|+++.+|..++.+++.+
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 344444 45555555555555553321 34445555555555555555555555444
No 106
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.6e-05 Score=79.08 Aligned_cols=219 Identities=16% Similarity=0.237 Sum_probs=153.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhh
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (536)
+-++.....+.|+.+.+|.+++..+..+++.-.+ -.....++.+....+.|++..|-..|+..+..+++.+++
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----- 801 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----- 801 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence 3456666778899999999999999999884333 233466889999999999999999999999999987543
Q ss_pred hhHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC--
Q 009359 241 HILPVIVN----FSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-- 312 (536)
Q Consensus 241 ~l~~~l~~----~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~-- 312 (536)
.++|.+.. --+......|.-+.+++++++...|+-. +...++..+++...|++...|.+++.+++.+++...
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 45555544 2222234667777899999998888743 244688999999999999999999999999998764
Q ss_pred -hHHHHHhhhHHHHH-hccCCCHHHHHHHHHHHHHhhhhhCHHHHH------HhHHHHHHHhhC-CCCHHHHHHHHHhhH
Q 009359 313 -PELAIQHILPCVKE-LSSDSSQHVRSALATVIMGMAPILGKDATI------EQLLPIFLSLLK-DEFPDVRLNIISKLD 383 (536)
Q Consensus 313 -~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~-d~~~~vr~~a~~~l~ 383 (536)
.+.+ ..++..+.. ...|.+..+|++|+..+..+....|.+... -.+...+..... +++..+|..+..|+.
T Consensus 882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 3433 333333333 345889999999999999988766633210 111122222222 344456667776666
Q ss_pred HHHh
Q 009359 384 QVNQ 387 (536)
Q Consensus 384 ~l~~ 387 (536)
.+-.
T Consensus 961 ei~a 964 (982)
T KOG4653|consen 961 EIQA 964 (982)
T ss_pred HHHH
Confidence 6543
No 107
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00028 Score=66.30 Aligned_cols=259 Identities=16% Similarity=0.105 Sum_probs=156.2
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccch-HHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHH
Q 009359 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RSDV-VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 315 (536)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l-~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (536)
...++-.+.+-..|++..+|..++.+|++.+...+.+.. ...+ ..++..+..+.+.+|...++.++..+........
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence 344555666667889999999999999999877554322 2233 4445556667788999999999998887665544
Q ss_pred HHHhhhH---HHHHhccCCCHHHHHHHHHHHHHhhhhhC---HHHHHHhHHHH---HHHhhCCCCHHHHHHHHHhhHHHH
Q 009359 316 AIQHILP---CVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPI---FLSLLKDEFPDVRLNIISKLDQVN 386 (536)
Q Consensus 316 ~~~~i~~---~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~ 386 (536)
+....++ .+..+..+.+..+|.++...++.+++..| +++|.+.+... +.-.++|+++.|-. |+...-.+
T Consensus 336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~- 413 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRT- 413 (533)
T ss_pred hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHh-
Confidence 4333333 34567789999999999999999988665 34444444322 23346889887743 33333332
Q ss_pred hhhchhHHHhhHHHHHHHhhcCCCh-HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 009359 387 QVIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (536)
Q Consensus 387 ~~~~~~~~~~~i~~~l~~~~~~~~~-~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (536)
.++....+..-..+.+.+ |..- +.+.-.-.+.-.+.. ..++ ..-.+......+++...+.||.++...-+....
T Consensus 414 --c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~-i~~d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd 488 (533)
T KOG2032|consen 414 --CYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNH-IHPD-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVD 488 (533)
T ss_pred --cCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhh-hCHH-HHHHHHHhchhheecchHHHHHHHHHHHHHHHH
Confidence 223222233333333222 2211 111111111111111 0111 011122223345566777899999888887777
Q ss_pred HhChhhh----hhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 466 EFGPDWA----MQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 466 ~~~~~~~----~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
++.+... ...+...+..+..|+-++++..+..|++.+..
T Consensus 489 ~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 489 SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 6654321 25677778888999999999999999988654
No 108
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=7.4e-05 Score=72.91 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccC--chhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009359 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (536)
Q Consensus 201 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~ 269 (536)
+.++-++......++..||...+..+..+..... ++...+.+...+..-+.|..+.||..|..+|..+.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ 154 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 3333344444444444555555555554444222 13334444444444455555555555555554443
No 109
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.48 E-value=2e-05 Score=70.02 Aligned_cols=207 Identities=13% Similarity=0.093 Sum_probs=148.4
Q ss_pred ccCCCHHHHHHHHHHHHHhhhhh-CHHHHH-HhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHh
Q 009359 328 SSDSSQHVRSALATVIMGMAPIL-GKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (536)
Q Consensus 328 ~~d~~~~vr~~a~~~l~~l~~~~-~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 405 (536)
-..+++.++..+..+++..+..- ..+... -..++.+..++.++++.+|..|+.++..+..........+..++.+.+.
T Consensus 22 ~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 22 ESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEE 101 (254)
T ss_pred hcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 34677899999999998875422 222222 2468899999999999999999999998876555444445566666664
Q ss_pred hcCC--ChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhC--hhhhhhchhHHHH
Q 009359 406 AEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG--PDWAMQHIVPQVL 481 (536)
Q Consensus 406 ~~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~ 481 (536)
..+. +..++.++++++..+.-.-.........+|.++.++...+..+|..++++|..++..-. .+....+..+.++
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~ 181 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFL 181 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHH
Confidence 4433 56888899999988854332222233457778899998899999999999999886522 2233456777888
Q ss_pred hhccCC-ChHHHHHHHHHHHHHhhhhChHH----------------H--HHhHHHHHHhhcCCccchhhhcc
Q 009359 482 EMINNP-HYLYRMTILQAISLLAPVMGSEI----------------T--CSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 482 ~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----------------~--~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
.+++.. +..+-..++..+.++...+.++. | .+.+-..+..+...++++||+..
T Consensus 182 ~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 182 SLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 877764 78888999999999976655431 1 23467788889999999998753
No 110
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.48 E-value=0.0011 Score=64.60 Aligned_cols=373 Identities=15% Similarity=0.075 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhcCcch-HHHHHHHHhHHHhhcc
Q 009359 160 LKTELRTIYRQLCQDDM-PMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKL 232 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~ 232 (536)
.....++.+.+++.+++ ..++..++.++..+....+. ......+++.+..+..-+.. ..+..+ .+...+..
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~--~~~a~~s~ 169 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDV--SRAAHLSS 169 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhh--hhhccccc
Confidence 34456788888998888 89999999999998865432 12334566666655552211 111111 11111111
Q ss_pred cCchh---hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----------cccchHH--HHHHhcCCCcHHHH
Q 009359 233 LEPQD---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----------TRSDVVP--AYVRLLRDNEAEVR 297 (536)
Q Consensus 233 ~~~~~---~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~----------~~~~l~~--~l~~ll~d~~~~vr 297 (536)
..... +...+...+.-+....+..+|.++..++..-...+-+.. ....+.+ ...++++|++..-|
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 11110 112233333334444567789998888874222211111 0112333 55677888888888
Q ss_pred HHHHHhHHHHHhhcChH-------HHH----Hhh-hHHHHHhccCCCHHHHHHHHHHHHHhh---hhhCHHHHHHhHHHH
Q 009359 298 IAAAGKVTKICRILNPE-------LAI----QHI-LPCVKELSSDSSQHVRSALATVIMGMA---PILGKDATIEQLLPI 362 (536)
Q Consensus 298 ~~a~~~l~~~~~~~~~~-------~~~----~~i-~~~l~~l~~d~~~~vr~~a~~~l~~l~---~~~~~~~~~~~l~~~ 362 (536)
..++.++..+...-..+ .+. +.+ .-....+..|+-|..-...+......+ +......+.....+.
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~ 329 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT 329 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence 88888887776643111 000 011 111123345665544333333333222 222222222222222
Q ss_pred HHHhh------CCCCHHHHHHHHHhh---HHHHhhhchh---HHHh-hHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh-
Q 009359 363 FLSLL------KDEFPDVRLNIISKL---DQVNQVIGID---LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL- 428 (536)
Q Consensus 363 l~~~l------~d~~~~vr~~a~~~l---~~l~~~~~~~---~~~~-~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~- 428 (536)
..+++ +...+..|.-++.-. ...+...+.. ++.+ .....+....-.++..++.+++.++..++..+
T Consensus 330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 22222 223333343333211 1111111111 1111 11111222222356778888888887766533
Q ss_pred --chhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh---hhhhchhHHHHhhccCCChHHHHHHHHHHHHHh
Q 009359 429 --GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (536)
Q Consensus 429 --~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~ 503 (536)
....-..++...+.+++.|+...|...+..++..+.-.+++. +.....+..+..+..+++..+|..+++++-++.
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 222223456666888889999999999999999998877753 556788999999999999999999999999987
Q ss_pred hhhChHH----HHHhHHHHHHhhcCCccchhhhcc
Q 009359 504 PVMGSEI----TCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 504 ~~~~~~~----~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
-....++ ...-....+..+.+||+..|.+.+
T Consensus 490 f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 490 FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC 524 (678)
T ss_pred hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence 6555433 233346688899999999998764
No 111
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.45 E-value=0.0014 Score=66.61 Aligned_cols=142 Identities=19% Similarity=0.203 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC-CCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChH
Q 009359 334 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412 (536)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~ 412 (536)
.+|..+.-+++.++-.. +.....++|.+.+-|. .+.-.+|...+-+++.+|..+.. +.+..+|.|...+.|+..-
T Consensus 946 ~vra~~vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~i 1021 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVI 1021 (1529)
T ss_pred HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHH
Confidence 56777777777776443 3345678899888876 44568999999999999875532 5588999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHH
Q 009359 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480 (536)
Q Consensus 413 ~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l 480 (536)
+|...+..+..+.+.--.+ |...++--++-.+-|.++.||.-|--+++.+...-.+.++...++..+
T Consensus 1022 VRrqt~ilL~rLLq~~~vK-w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1022 VRRQTIILLARLLQFGIVK-WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred HHHHHHHHHHHHHhhhhhh-cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 9999999998876522111 222222223344558999999999999999988766655544444443
No 112
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.43 E-value=3.9e-05 Score=65.05 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=61.6
Q ss_pred HHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHH
Q 009359 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD 373 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 373 (536)
+.||..++.+++.++..++. +.+..+|.+...+.|+++.||..++..+..+... +.-.+.+.++..+..++.|++++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 56666666666666665432 2344455666666667777777766666665432 21222344555566666777777
Q ss_pred HHHHHHHhhHHHHhhhchhHHHhhHHHHHH
Q 009359 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (536)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 403 (536)
||..|..++..+....+++.+...+.+.+.
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 777777777777665444444333333333
No 113
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.42 E-value=1.6e-05 Score=77.41 Aligned_cols=264 Identities=14% Similarity=0.152 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCH
Q 009359 254 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 333 (536)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~ 333 (536)
+..++..+++.++.+.+.++. ..+..+..++.+++|.+..||..|++.|..+|+. ...+...+...|.+++..+++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHHHHHHHHHHhcccH
Confidence 466777777777766654442 1235667777777777777777777777777763 333445666667777766666
Q ss_pred HHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchh------HHHhhHHHHHHHhhc
Q 009359 334 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAE 407 (536)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~i~~~l~~~~~ 407 (536)
.....+-+++..+...-+. .....++..+... ...++.+|+.++..+..-...++.+ ...+.++..+.+.+.
T Consensus 111 ~E~~~v~~sL~~ll~~d~k-~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~ 188 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPK-GTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ 188 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HH-HHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH
Confidence 6555555555555443111 1111121111110 1344567777776664443333322 233455666666666
Q ss_pred CCChHHHHHHHHHHHHHHhh--hchhhHHHHHHHHHHHHhc-C-----cchHHHHHHHHHHHHHHHHh----Chh----h
Q 009359 408 DRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQWLK-D-----KVYSIRDAAANNVKRLAEEF----GPD----W 471 (536)
Q Consensus 408 ~~~~~~R~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~-d-----~~~~Vr~~a~~~l~~l~~~~----~~~----~ 471 (536)
|-...-=..++..+..+-.. ..+....+.+++++..-.. | .++..-...+.|+..-...+ ... .
T Consensus 189 DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y 268 (556)
T PF05918_consen 189 DVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNY 268 (556)
T ss_dssp T--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHH
T ss_pred hccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHH
Confidence 53221111222222222110 0111123445555543321 1 11222223333333222111 111 1
Q ss_pred hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccc
Q 009359 472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSES 528 (536)
Q Consensus 472 ~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~ 528 (536)
....++|.+..+ ....|...+..++.++...|... ...++|.+..++.+-.|
T Consensus 269 ~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 269 MCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHTCCCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS-
T ss_pred HHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCC
Confidence 224455555444 45778899999999999988655 56666777777665555
No 114
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00042 Score=65.12 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=109.5
Q ss_pred cchhhHHHhhhhhhccC-CCh--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHH-Hhhc
Q 009359 139 FTARVSSCGLFHVAYPS-APE--ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFE-ELTQ 212 (536)
Q Consensus 139 ~~~r~~a~~~l~~~~~~-~~~--~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~-~~l~ 212 (536)
+..|......+..+... .-+ .....++..+..-..|++..+|..|+..|++.+...+.+ .+.+.++..+. .+..
T Consensus 231 ~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D 310 (533)
T KOG2032|consen 231 ENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYD 310 (533)
T ss_pred ccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhc
Confidence 45566554444444322 111 245556666666678999999999999999999875553 34455555444 4555
Q ss_pred CcchHHHHHHHHhHHHhhcccCchhhhhhhHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchH---H
Q 009359 213 DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV---IVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVV---P 283 (536)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~---l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~---~ 283 (536)
+.+.+|...++.+|..+.+.....+....+++. +..+..|.+.++|.++...+|.++...|.. .+.+++. .
T Consensus 311 ~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~ 390 (533)
T KOG2032|consen 311 DLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLA 390 (533)
T ss_pred CCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccc
Confidence 567789999999999998877765555555554 455778889999999999999999887753 3333222 2
Q ss_pred HHHHhcCCCcHHHHHHHHH
Q 009359 284 AYVRLLRDNEAEVRIAAAG 302 (536)
Q Consensus 284 ~l~~ll~d~~~~vr~~a~~ 302 (536)
.+.-.+.|++|.|-.++-.
T Consensus 391 ~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 391 PLLLHLQDPNPYVARACRS 409 (533)
T ss_pred cceeeeCCCChHHHHHHHH
Confidence 2333457888877554433
No 115
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.40 E-value=2.6e-06 Score=67.45 Aligned_cols=108 Identities=19% Similarity=0.094 Sum_probs=79.3
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh---chhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh--
Q 009359 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-- 470 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-- 470 (536)
..+++.+.+++.++++.+|..++.++..++... .........+|.+.+++.|+++.||..++.+++.++...+..
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 346677777777777888888888888777542 122223367788888888888899999999999887654321
Q ss_pred -hhhhchhHHHHhhccCCChHHHHHHHHHHHHHh
Q 009359 471 -WAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (536)
Q Consensus 471 -~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~ 503 (536)
.....+++.+.+.+.+++..+|..+++++.+++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 122457888888888888889999998888875
No 116
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.00079 Score=67.40 Aligned_cols=185 Identities=13% Similarity=0.130 Sum_probs=121.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhcCc-chHHHHHHHHhHHHhhcccCch--h-
Q 009359 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ--D- 237 (536)
Q Consensus 166 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~- 237 (536)
.+|..+-...++..+..++.-+.++......+ .-.+.++|.+..+++++ +..+...|+.++..+++.+++. .
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 33333333336665555554444443322222 12467899999999987 5689999999999999999872 1
Q ss_pred hhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHH-
Q 009359 238 CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL- 315 (536)
Q Consensus 238 ~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~- 315 (536)
.....+|.+.. ++.-..-.|-..+.++|..+.+..+.......-+..++.++.=-.-.++..|+.....+|+.+.++.
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f 330 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF 330 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 22346676654 4444456678888888888887766554433334444444433334677888888889998887763
Q ss_pred -HHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhh
Q 009359 316 -AIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL 350 (536)
Q Consensus 316 -~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 350 (536)
+.-..+|.|..+++..+...-..++-++..++..+
T Consensus 331 ~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 331 HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 34566799999988888777777777777777655
No 117
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.37 E-value=0.0032 Score=61.56 Aligned_cols=454 Identities=11% Similarity=0.023 Sum_probs=237.6
Q ss_pred HHHHHhcChhHHHHHHHhhhHHHHHHhhChHhh---h---hccccccccccCCchHHHHHHHHHHhchhcccCCc--c-c
Q 009359 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERT---R---KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGL--E-Y 83 (536)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~---~---~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~ 83 (536)
.++..+-+.+|+.-..|+......+....+... . .+.+-++....++.++.....+..++.+....... . .
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 566677788888877777666555443332211 0 11122222344556666666666666554311110 1 1
Q ss_pred hhccchHHHhhhcCcc-hHHHHHHHHHHHHHHhhcChhh-----HHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCC
Q 009359 84 ANVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMREQD-----VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157 (536)
Q Consensus 84 ~~~ll~~l~~l~~~~~-~~vr~~a~~~l~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (536)
....++-+.+++++.+ ..+++...+++..+....+... ....+++.+.-+..-+....-..-+..+........
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~ 172 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKD 172 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccch
Confidence 1222334556666666 8899999999999988764321 122344444333331211111122222222222221
Q ss_pred hH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHH---HHHHHhh-------hhhHHHHHH--HHHHhhcCcchHHHHHH
Q 009359 158 EA---LKTELRTIYRQLCQDDMPMVRRSAATNLGK---FAATVEA-------AHLKSEIMS--IFEELTQDDQDSVRLLA 222 (536)
Q Consensus 158 ~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~---~~~~~~~-------~~~~~~l~~--~l~~~l~d~~~~vr~~a 222 (536)
.. .-..+.+.+..+..-.+..+|.+|..++.. +...-+. ......+.+ .+..+.+|++...|..+
T Consensus 173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s 252 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS 252 (678)
T ss_pred hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence 11 112233444444444467889999988883 2211100 111122333 45567788888888888
Q ss_pred HHhHHHhhcccCc-h------hhh----hhhHH-HHHHhcCCCCHHHHHHHHHHHHHHHHH---hCCCccccchHHHHHH
Q 009359 223 VEGCGALGKLLEP-Q------DCV----AHILP-VIVNFSQDKSWRVRYMVANQLYELCEA---VGPEPTRSDVVPAYVR 287 (536)
Q Consensus 223 ~~~l~~l~~~~~~-~------~~~----~~l~~-~l~~~~~d~~~~vR~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ 287 (536)
..++..+...-.. + .+. +.+.. ....+..|+-|..-...+..+...+.. ...........+...+
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e 332 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE 332 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence 8888877654311 0 000 11111 122344555444333333333333322 1111111122233333
Q ss_pred hc------CCCcHHHHHHHHHhHH---HHHhhcCh---HHH-HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC---
Q 009359 288 LL------RDNEAEVRIAAAGKVT---KICRILNP---ELA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--- 351 (536)
Q Consensus 288 ll------~d~~~~vr~~a~~~l~---~~~~~~~~---~~~-~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--- 351 (536)
++ .-..+..|..++.-.. .++...+. +.+ .......+....-..+..++.+++..+..++..+.
T Consensus 333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~ 412 (678)
T KOG1293|consen 333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR 412 (678)
T ss_pred HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2223344443332211 11111111 111 11112222222234566788888888777654332
Q ss_pred HHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchh---HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh
Q 009359 352 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (536)
Q Consensus 352 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~ 428 (536)
.+.-...+...+++.+.|++..|...+..++.++.-.+++- .+....+..+..+..+++..+|..+++++..+.-..
T Consensus 413 tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 413 TGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC 492 (678)
T ss_pred cCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence 11223455666777789999999999999988887666653 234567788899999999999999999998876444
Q ss_pred chhh----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 429 GVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 429 ~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
...+ ..+.-...+..+.+|+++.|++.++..+..+...
T Consensus 493 de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 493 DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 3332 1233344577788999999999999999887654
No 118
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.35 E-value=3.8e-06 Score=66.47 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc--hh
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QD 237 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~ 237 (536)
.+++.+.+++.++++.+|..++.+++.++...+. .......+|.+.+++.|+++.++..++.++..++...+. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3567788888899999999999999999875322 222336788888889998999999999999999875432 11
Q ss_pred -hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009359 238 -CVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (536)
Q Consensus 238 -~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~ 269 (536)
....+++.+.+.+++.+..+|..++.+|.+++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22347788888888888888888888887765
No 119
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.35 E-value=0.0047 Score=62.59 Aligned_cols=469 Identities=13% Similarity=0.104 Sum_probs=243.1
Q ss_pred ccccccccccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhc--CcchHHHHHHHHHHHHHHhhc-Ch-----
Q 009359 48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT--VEETCVRDKAVESLCRIGSQM-RE----- 119 (536)
Q Consensus 48 ~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~--~~~~~vr~~a~~~l~~~~~~~-~~----- 119 (536)
.++..+....+.++.+|.+|...+..+....+ +... |..... +..-..|+.|+-.+.++.... .+
T Consensus 5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~---f~~a----L~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 5 AIIELLSGSLSADQNVRSQAETQLKQLELTEG---FGVA----LAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHhccccchH---HHHH----HHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 34555566788999999999988877744222 2222 333332 345567888888888776643 21
Q ss_pred -------hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009359 120 -------QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAA 192 (536)
Q Consensus 120 -------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 192 (536)
++....+...+.++..+++..+|.++...+..+...-=++.++++++.+.+++.+.+..--..|.++|..+..
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 2223334444555555777888888899988888776677899999999999999888888999999999987
Q ss_pred HHhhhhhH---HHHHHH---HHHhhcCcchHHHHHHH--HhHHHh---hcccCc------hhhhhhhHHHHHHhcC----
Q 009359 193 TVEAAHLK---SEIMSI---FEELTQDDQDSVRLLAV--EGCGAL---GKLLEP------QDCVAHILPVIVNFSQ---- 251 (536)
Q Consensus 193 ~~~~~~~~---~~l~~~---l~~~l~d~~~~vr~~a~--~~l~~l---~~~~~~------~~~~~~l~~~l~~~~~---- 251 (536)
....+... +..++. +..+....+...|..++ ..+... .....+ ..+...+++.+...+.
T Consensus 158 ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~ 237 (1005)
T KOG2274|consen 158 EVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ 237 (1005)
T ss_pred HHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 65432111 111221 12223333444454444 222222 222221 1223334444443332
Q ss_pred --C-CCHHHHHHHHHHHHHHHHHhCCCcc--ccchHH----HHHHhc------------------CCCcHHHH------H
Q 009359 252 --D-KSWRVRYMVANQLYELCEAVGPEPT--RSDVVP----AYVRLL------------------RDNEAEVR------I 298 (536)
Q Consensus 252 --d-~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~----~l~~ll------------------~d~~~~vr------~ 298 (536)
+ .+|..|....+++..+.+.++.... ....++ .+.+.+ .|.++++. .
T Consensus 238 ~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i 317 (1005)
T KOG2274|consen 238 RNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVI 317 (1005)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhh
Confidence 2 3678899999999888877653221 011111 111110 12222211 0
Q ss_pred HHHHhHHHHHh------hcChHHHHHhhhHHHH------------------Hh--ccCCCHHHHHHHHHHHHHhhhhhCH
Q 009359 299 AAAGKVTKICR------ILNPELAIQHILPCVK------------------EL--SSDSSQHVRSALATVIMGMAPILGK 352 (536)
Q Consensus 299 ~a~~~l~~~~~------~~~~~~~~~~i~~~l~------------------~l--~~d~~~~vr~~a~~~l~~l~~~~~~ 352 (536)
..+..+..++. .+... + ..+++.+. +. -+|+...+|...-..+-.+...+|.
T Consensus 318 ~i~eF~s~i~t~~~~~~ti~~~-l-~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~ 395 (1005)
T KOG2274|consen 318 QIVEFLSTIVTNRFLSKTIKKN-L-PELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGN 395 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccc
Confidence 11111111111 11110 0 00000000 00 0233333333222222222222221
Q ss_pred HH------------------------------------------------HHHhHHHHHHHhhC-CCCHHHHHHHHHhhH
Q 009359 353 DA------------------------------------------------TIEQLLPIFLSLLK-DEFPDVRLNIISKLD 383 (536)
Q Consensus 353 ~~------------------------------------------------~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~ 383 (536)
.. ....+...+...+. .+.|..-..++.+++
T Consensus 396 ~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~ 475 (1005)
T KOG2274|consen 396 EGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTIS 475 (1005)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHH
Confidence 00 00111111111111 223333334555555
Q ss_pred HHHhh--hchhHHHhhHHH-HHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 009359 384 QVNQV--IGIDLLSQSLLP-AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNV 460 (536)
Q Consensus 384 ~l~~~--~~~~~~~~~i~~-~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l 460 (536)
.+... ..++.. ..++. .+..+..+....+|..++.++...++.---..+.+.++..+.++..+...+|-....++|
T Consensus 476 ~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~L 554 (1005)
T KOG2274|consen 476 KFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEAL 554 (1005)
T ss_pred HHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHH
Confidence 55444 222222 22232 223334466777888888887666522111224567788888888999999999999999
Q ss_pred HHHHHHhChhh---hhhchhHHHHhhcc--CCChHHHHHHHHHHHHHhhhhChH-HHHHhHHHHHHhhcCCcc
Q 009359 461 KRLAEEFGPDW---AMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDSE 527 (536)
Q Consensus 461 ~~l~~~~~~~~---~~~~i~~~l~~~~~--d~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~ 527 (536)
+..++.- +++ ....+.|....++. .+|+.+-..+-.++..+++..... -+.+.++|.+.+.+.-+.
T Consensus 555 s~vv~~d-pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 555 SSVVKLD-PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNA 626 (1005)
T ss_pred HHHhccC-hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcc
Confidence 9888753 332 23567777666422 234566677777777766532211 146788999988777665
No 120
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.31 E-value=0.0022 Score=62.99 Aligned_cols=261 Identities=17% Similarity=0.163 Sum_probs=131.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCH
Q 009359 176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW 255 (536)
Q Consensus 176 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~ 255 (536)
+..++..|++.+..+.+.++. ..+..+..+..++.|++..||..|++.|..++..-+ .+...+...|.+++...++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHHHHHHhcccH
Confidence 567888888888888877753 345667777778888888888888888888876432 3567777788888887777
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc--CCCcHHHHHHHHHhHHHHHhhcCh------HHHHHhhhHHHHHh
Q 009359 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL--RDNEAEVRIAAAGKVTKICRILNP------ELAIQHILPCVKEL 327 (536)
Q Consensus 256 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll--~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~i~~~l~~l 327 (536)
..+..+-++|..+...-. ...+-.++..+. ...+..+|..+++.+..-...++. +.....++..+...
T Consensus 111 ~E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkv 186 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKV 186 (556)
T ss_dssp HHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHH
Confidence 777777777766664311 112233333333 134456888888777654443322 23345555666666
Q ss_pred ccCCCHHHHHHHHHHHHHhhhh--hCHHHHHHhHHHHHHHhhC------CCCHHHHHHHHHhhHHHHhhhchh----HHH
Q 009359 328 SSDSSQHVRSALATVIMGMAPI--LGKDATIEQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGID----LLS 395 (536)
Q Consensus 328 ~~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~----~~~ 395 (536)
+.|-...-=..+...+..+-.. .....-...+++++..... -.+++.-...+.|+..-...+... .+.
T Consensus 187 L~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv 266 (556)
T PF05918_consen 187 LQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFV 266 (556)
T ss_dssp CTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHH
T ss_pred HHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHH
Confidence 6663221111222333332210 1112223556666665432 122333333444444444443322 222
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh
Q 009359 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (536)
..+...+..-+++-....|...+..+..++...+... ...++|.+...|
T Consensus 267 ~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L 315 (556)
T PF05918_consen 267 NYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL 315 (556)
T ss_dssp HHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence 2222222222333345678889999999998888655 555566666655
No 121
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00022 Score=71.37 Aligned_cols=211 Identities=18% Similarity=0.205 Sum_probs=140.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHH
Q 009359 249 FSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE 326 (536)
Q Consensus 249 ~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~ 326 (536)
.+.|+...+|..+...+..+.+.-.. -...+.++..++..++|.++-|=..|++++..+++..+... .+.+......
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i-l~dL~e~Y~s 813 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI-LPDLSEEYLS 813 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh-HHHHHHHHHh
Confidence 44566677898888888888874322 22345789999999999999999999999999998743322 2322222222
Q ss_pred hccCCCHHHHHHHHHHHHHhhhhhCHH--HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhc---hhHHHhhHHHH
Q 009359 327 LSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPA 401 (536)
Q Consensus 327 l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~i~~~ 401 (536)
..+-.....|...-+++..++...|+- .+.+.+...++..++|++...|..++.++|.+|.... .+++ ..++..
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ev~~~ 892 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HEVLQL 892 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HHHHHH
Confidence 222222345555568888887777753 3456788889999999998999999999999987653 3444 333343
Q ss_pred HHHh-hcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh------------cCcchHHHHHHHHHHHHHHHH
Q 009359 402 IVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL------------KDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 402 l~~~-~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------------~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
+... ..|.+..+|.+|+..+..+....|.+ ++|++-..+ .+++..+|..+..++..+-..
T Consensus 893 Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-----lLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 893 ILSLETTDGSVLVRRAAVHLLAELLNGTGED-----LLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHccCCchhhHHHHHHHHHHHHhccchh-----hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 4333 34778999999999999998877754 333221111 244445666666666555443
No 122
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.23 E-value=0.0002 Score=66.68 Aligned_cols=192 Identities=16% Similarity=0.207 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccCc-
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP- 235 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~- 235 (536)
...+...+.++-+++...-|+.|..-|..+....+- +.+...|+-.+.+.+.| .++..|..|+..|..++..-+.
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 344555666665665666777777766554432111 34456777888888888 7888999999999999876554
Q ss_pred -hhhhhhhHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh
Q 009359 236 -QDCVAHILPVIVNFSQDKSWRVRYMVANQ-LYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (536)
Q Consensus 236 -~~~~~~l~~~l~~~~~d~~~~vR~~~~~~-l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (536)
.+..+..+-.+.+...|....|-..|.+. +..++...+... ...+.|.++. .+...-.++++.+..+++.+..
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 22334445555566666655555555544 444444433221 2233444443 3334556677788888888877
Q ss_pred HHH---HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHH
Q 009359 314 ELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357 (536)
Q Consensus 314 ~~~---~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 357 (536)
+.+ .+.+.|.+.+...+.+..||..++-++..+...+|.+.+.+
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 743 46667777777777888888888888888888777555443
No 123
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=0.00031 Score=68.77 Aligned_cols=181 Identities=18% Similarity=0.152 Sum_probs=111.2
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh
Q 009359 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (536)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (536)
++++..++.++.+....++..||.-++..+..+....+. +...+.+...+..-+.|..|.||..|+.++..+-..-+.
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 567788888889999999999999999999888763221 222345667777778999999999999999998753333
Q ss_pred HHHHHhhhHHHHH-hccCCCHHHHHHHHHHHHHhhhhhCH-------------HHHH--------------HhHHHHHHH
Q 009359 314 ELAIQHILPCVKE-LSSDSSQHVRSALATVIMGMAPILGK-------------DATI--------------EQLLPIFLS 365 (536)
Q Consensus 314 ~~~~~~i~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~-------------~~~~--------------~~l~~~l~~ 365 (536)
+.. .+...+.. ..+|+++.||++++..+..=.+..|. ..+. +...-.+..
T Consensus 160 ee~--~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~Llew 237 (892)
T KOG2025|consen 160 EEC--PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEW 237 (892)
T ss_pred Ccc--cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Confidence 221 22233333 24799999999998766542222210 0111 122334445
Q ss_pred hhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009359 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (536)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~ 422 (536)
.++|.+..||.++...+..=.-.+. ...++..+.++--+.+.+++..+++++=
T Consensus 238 gLnDRe~sVk~A~~d~il~~Wl~~~----dgni~ElL~~ldvsnss~vavk~lealf 290 (892)
T KOG2025|consen 238 GLNDREFSVKGALVDAILSGWLRFS----DGNILELLERLDVSNSSEVAVKALEALF 290 (892)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhhc----cccHHHHHHHhccccchHHHHHHHHHHH
Confidence 5667777777776665544221111 1234444444444444566666666553
No 124
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.23 E-value=0.00052 Score=64.11 Aligned_cols=192 Identities=15% Similarity=0.132 Sum_probs=127.5
Q ss_pred HHhcCCCcHHHHHHHHHhHHHHHhhcC---hHHHHHhhhHHHHHhccC-CCHHHHHHHHHHHHHhhhhhCHHHH--HHhH
Q 009359 286 VRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGKDAT--IEQL 359 (536)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l 359 (536)
..+-++...+-|..|+..+..+...-+ .+.....|+-.+.+.+.| .+...|..|++.|..++..-....+ .+..
T Consensus 293 ~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~a 372 (516)
T KOG2956|consen 293 KEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIA 372 (516)
T ss_pred HhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHH
Confidence 333344456778888887777655322 122345666666666666 8889999999999999875443322 2333
Q ss_pred HHHHHHhhCCCCHHHHHHHHHh-hHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH---HH
Q 009359 360 LPIFLSLLKDEFPDVRLNIISK-LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DD 435 (536)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~---~~ 435 (536)
+.-++..-+|...+|-..|.++ +..+....+... ...+-|.|.. .++..-.++++++..+.+.+..+.. .+
T Consensus 373 i~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 373 ICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 3444555667666554455544 444443333322 2455565554 4555667888899999998888775 46
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccC
Q 009359 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 486 (536)
Q Consensus 436 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d 486 (536)
.+.|.+++..+..+..||++++.||-.+...+|.+ .+-|.|.++-..
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~----~mePhL~~Lt~s 494 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME----EMEPHLEQLTSS 494 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH----hhhhHhhhccHH
Confidence 78999999999999999999999999999998853 566666655433
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.0017 Score=57.74 Aligned_cols=281 Identities=16% Similarity=0.159 Sum_probs=156.1
Q ss_pred HHhhhhhhccCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHhhcCcch
Q 009359 145 SCGLFHVAYPSAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA-------HLKSEIMSIFEELTQDDQD 216 (536)
Q Consensus 145 a~~~l~~~~~~~~~~-~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~-------~~~~~l~~~l~~~l~d~~~ 216 (536)
...++..+.+...+. ..+++++.+...+..++..|+..+++.++.+.+..+.. ..-..+++.+..++..+++
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 455555555544333 56788999999998889999999999999998776532 1235688899999999999
Q ss_pred HHHHHHHHhHHHhhcccCc-h-hhhhhhHH--HHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhc
Q 009359 217 SVRLLAVEGCGALGKLLEP-Q-DCVAHILP--VIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLL 289 (536)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~--~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll 289 (536)
+|-.+|++.+..++..-.. + .+...++. .+.++...-+.-+|.-+...+-.+...-+ .+.....++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 9999999999998753211 0 00001110 01111111233455555555555543322 1222446777777666
Q ss_pred CC-CcHHHHHHHHHhHHHHHhhc-ChHHH-HHhhhHHHHHhcc--CCCHHHHHHHHHHHHHhhhhhCHHHHH--------
Q 009359 290 RD-NEAEVRIAAAGKVTKICRIL-NPELA-IQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGKDATI-------- 356 (536)
Q Consensus 290 ~d-~~~~vr~~a~~~l~~~~~~~-~~~~~-~~~i~~~l~~l~~--d~~~~vr~~a~~~l~~l~~~~~~~~~~-------- 356 (536)
+. .+.-|+..++.-...+...- |.+.+ .+.++..+...+. |.++.-+..+.-.. .+.+|++...
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgf---gkffgkeaimdvseeaic 299 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGF---GKFFGKEAIMDVSEEAIC 299 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH---HHHhcchHHhhcCHHHHH
Confidence 54 66678888888777776532 22211 2334444444432 33333222222222 2223322211
Q ss_pred ---HhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhc-hhHHHhhHHHHH---HHhhcCCC-hHHHHHHHHHHHHHHhhh
Q 009359 357 ---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAI---VELAEDRH-WRVRLAIIEYIPLLASQL 428 (536)
Q Consensus 357 ---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~i~~~l---~~~~~~~~-~~~R~~a~~~l~~l~~~~ 428 (536)
...+...+.++...++...+.|+.++|.++.... .+.+.+.--|.. ..-.-|.+ ..-..+++.++..++...
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 1223334455566777888999999998876542 222211111222 22222333 334457778887777644
No 126
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.21 E-value=0.0012 Score=63.39 Aligned_cols=191 Identities=16% Similarity=0.118 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCC
Q 009359 181 RSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDK 253 (536)
Q Consensus 181 ~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~ 253 (536)
...++.+..|..+.-+ ..+.+.++-++...+..++..||..++..++.+.+.+++ +...+.++..+.+.+-|.
T Consensus 65 dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR 144 (885)
T COG5218 65 DRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR 144 (885)
T ss_pred HHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc
Confidence 3345555555543221 234455555666666677777787777777777777776 555666666666777777
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCC
Q 009359 254 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 332 (536)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~ 332 (536)
.+.||..|..+|..+...-+++. ..+...+...+ .||+.+||..|+..+..= +.-.|.+.....|-+
T Consensus 145 E~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~vd----------nsT~p~IlERarDv~ 212 (885)
T COG5218 145 EKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNISVD----------NSTYPCILERARDVS 212 (885)
T ss_pred hHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHeeeC----------CCcchhHHHHhhhhh
Confidence 77788877777777664433322 12333333333 588888888877655322 333466666666666
Q ss_pred HHHHHHH-HHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHH
Q 009359 333 QHVRSAL-ATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (536)
Q Consensus 333 ~~vr~~a-~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (536)
...|+.. ...+..++.... ....+.++ .+.-.+.|.+..||.++...+..-
T Consensus 213 ~anRr~vY~r~Lp~iGd~~~-lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia~~ 264 (885)
T COG5218 213 GANRRMVYERCLPRIGDLKS-LSIDKRIL-LMEWGLLDREFSVKGALVDAIASA 264 (885)
T ss_pred HHHHHHHHHHHhhhhcchhh-ccccceeh-hhhhcchhhhhhHHHHHHHHHHHH
Confidence 5555544 344444433211 01122333 455567888888888887776553
No 127
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0032 Score=63.24 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=135.2
Q ss_pred chHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhH----HhhHHHHHHHHhcCc-ccchhhHHHhhhhhhccCCChH---
Q 009359 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDV----VEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEA--- 159 (536)
Q Consensus 88 l~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~--- 159 (536)
-.+|..+-...++...-.++.-|+.+......+.. ...+.|.+.++.+++ ++.+-.-||+++..+++.++..
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 33455555554666555555555554443333222 345788888888887 6788889999999998887764
Q ss_pred -HHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch-
Q 009359 160 -LKTELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ- 236 (536)
Q Consensus 160 -~~~~l~~~l~~-ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 236 (536)
+..+.+|.|.+ ++.=.--.|.+.++++|..+....+......--+-.+..++.=-...++..|+.+....+..+..+
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33345665554 444455678899999999998876654333333333444443334556778888888888877764
Q ss_pred -hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc------cccchHHHHHHhcC
Q 009359 237 -DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------TRSDVVPAYVRLLR 290 (536)
Q Consensus 237 -~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~ll~ 290 (536)
.++-..+|.+..+++..+.+.-..++-++..++..+.... ....++....+++.
T Consensus 330 f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 330 FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 4567799999999998888888899999999988765432 22356666666654
No 128
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.17 E-value=0.00041 Score=64.13 Aligned_cols=182 Identities=16% Similarity=0.168 Sum_probs=111.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccC----chh
Q 009359 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE----PQD 237 (536)
Q Consensus 166 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~ 237 (536)
...+..+.+.....|..++..+..+...-.. ......+++.+.+.++-...+-+..|+.+++-++-.+| .+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 3344555677889999999988887644222 22345677888888876655556677777777766654 256
Q ss_pred hhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHH-----HhcC-C---------CcHHHHHH
Q 009359 238 CVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEPT-RSDVVPAYV-----RLLR-D---------NEAEVRIA 299 (536)
Q Consensus 238 ~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~-----~ll~-d---------~~~~vr~~ 299 (536)
+...+.|.|.+.+.|. +..+|.+++.+|+-++-..+.+.. ....+..+. ...+ | +++.+..+
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 7788999999988875 457888888899887755444321 111112221 1111 1 12456677
Q ss_pred HHHhHHHHHhhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhh
Q 009359 300 AAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (536)
Q Consensus 300 a~~~l~~~~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~ 347 (536)
|+.+++-+...++.. ...+..+|.+..++...+..||.+|.++|..+.
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 777777666655542 222334555555555556666666666655553
No 129
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.10 E-value=0.0011 Score=61.27 Aligned_cols=198 Identities=18% Similarity=0.180 Sum_probs=112.9
Q ss_pred cCCCHHHHHHHHHHHHHhhhh-hCHHHH---HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhc----hhHHHhhHHH
Q 009359 329 SDSSQHVRSALATVIMGMAPI-LGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLP 400 (536)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~-~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~i~~ 400 (536)
.+++...|.+++..+..+... +-.++. ...+++.+.+.++-...+-+..|+.+++-++-.+| .+.+.+.+.|
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~ 132 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKP 132 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Confidence 445566666666666554432 122222 24456666666665554445556666666666655 2344466777
Q ss_pred HHHHhhcCCC--hHHHHHHHHHHHHHHhhhchh--hHHH--HHHHHHHHH--h-cC---------cchHHHHHHHHHHHH
Q 009359 401 AIVELAEDRH--WRVRLAIIEYIPLLASQLGVG--FFDD--KLGALCMQW--L-KD---------KVYSIRDAAANNVKR 462 (536)
Q Consensus 401 ~l~~~~~~~~--~~~R~~a~~~l~~l~~~~~~~--~~~~--~l~~~l~~~--l-~d---------~~~~Vr~~a~~~l~~ 462 (536)
.|.+.+.|.. ...|..++.+++.++-..+.+ .... ..+..++.. . .| +++.|..+|+.+++.
T Consensus 133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~l 212 (309)
T PF05004_consen 133 VLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWAL 212 (309)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHH
Confidence 7777776654 456667776666554433222 1110 112211111 1 11 135688888888888
Q ss_pred HHHHhChhh---hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhCh---HH---HHHhHHHHHHhhcCCc
Q 009359 463 LAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EI---TCSQLLPVVINASKDS 526 (536)
Q Consensus 463 l~~~~~~~~---~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~---~~~~~~~~l~~~l~d~ 526 (536)
+...++... ..+..+|.|..++..++..||.+|.++++-+.+.... ++ ..+.+...+..+..|.
T Consensus 213 Llt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 213 LLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 877766532 2255677778888888888888888888877655442 22 2455666677777665
No 130
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.015 Score=57.43 Aligned_cols=180 Identities=21% Similarity=0.179 Sum_probs=107.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH-------HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhh----C
Q 009359 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----G 351 (536)
Q Consensus 283 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~-------~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----~ 351 (536)
|.+.+.++-++.+||..|+.-+-.+....+++ ...+.=+..+..+++|+-+.||..|...+..+...+ +
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 55666666667777777766666655554443 122333345566677777888877777666654322 3
Q ss_pred HHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchh
Q 009359 352 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (536)
Q Consensus 352 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~ 431 (536)
+....+-+-.++-.+-.|...+||.+.++++..+...=..-.+.+.++|.+...+.|+..++|.++...+..+-..--..
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~ 336 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAK 336 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhh
Confidence 33222223333334456778899999999988886543333445788898888899999999999999888775433322
Q ss_pred hHHHH-HHHHHHHHhcCcchHHHHHHHHHHHH
Q 009359 432 FFDDK-LGALCMQWLKDKVYSIRDAAANNVKR 462 (536)
Q Consensus 432 ~~~~~-l~~~l~~~l~d~~~~Vr~~a~~~l~~ 462 (536)
++.=. +-.++..+-.|+.+.-|..+.-.+..
T Consensus 337 f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 337 FWKICPMDHILVRLETDSRPVSRRLVSLIFNS 368 (1005)
T ss_pred hhccccHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 22110 11123444455555555544444333
No 131
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.02 E-value=0.00015 Score=73.03 Aligned_cols=139 Identities=16% Similarity=0.126 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCcccchhhHHHhhhhhhccCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhh
Q 009359 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHL 199 (536)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~ 199 (536)
+.|.+........-.+|..-...+..+..+++.. ..+.++|.+++.+.=+|..||-.+..++..+....+. ..+
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~ 947 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH 947 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH
Confidence 4444443333222334444455555555555543 2344555556666555566666665555555544333 334
Q ss_pred HHHHHHHHHHhhcCcc---hHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHH
Q 009359 200 KSEIMSIFEELTQDDQ---DSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQ 264 (536)
Q Consensus 200 ~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~ 264 (536)
.+.++|.+..+-.|.+ -.||..|++++..+.+..+. ..+.+.++..+.+.+.|+.-.||..|+.+
T Consensus 948 ~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 948 LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 4555555555555443 34566666666655554443 22344455555555555555555555443
No 132
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.00 E-value=1.3e-05 Score=52.94 Aligned_cols=53 Identities=28% Similarity=0.095 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHhhhchh--hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 009359 411 WRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 463 (536)
Q Consensus 411 ~~~R~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (536)
|.+|..++.+|+.++...+.. .+.+.++|.+..++.|+++.||..|+.+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 678888888888766544332 24577888888888888889999999888864
No 133
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.96 E-value=1.2e-05 Score=53.12 Aligned_cols=52 Identities=38% Similarity=0.471 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHH
Q 009359 177 PMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGA 228 (536)
Q Consensus 177 ~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 228 (536)
|.||..|+.+||.++...+. ..+.+.++|.+..+++|+++.||..|+.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 45666666666665433322 23455666666666666666666666666654
No 134
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0061 Score=60.03 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=101.6
Q ss_pred HHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch-------hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--
Q 009359 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV-- 272 (536)
Q Consensus 202 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~-- 272 (536)
-.-|.+...++-.|..||..|+..+-.+-...+++ ...+.=...+.++++|+-+.||..+...+..+...+
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 34567777888888899998888877665555442 233444556778889999999988877776665432
Q ss_pred --CCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHh
Q 009359 273 --GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGM 346 (536)
Q Consensus 273 --~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l 346 (536)
++....+-+-.++-.+-.|...+||.+..+++..+...-......+.++|.+...+.|.+.+||-++++.+..+
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 22221122223333445678889999999999888765434456688888888888999999999998888766
No 135
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0012 Score=63.17 Aligned_cols=248 Identities=16% Similarity=0.075 Sum_probs=134.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHh-cCCCC
Q 009359 176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF-SQDKS 254 (536)
Q Consensus 176 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-~~d~~ 254 (536)
.+.+.+.++-.+|-..-... -.++...+.+++.+.+...-.+|...++-+.-.... ...+.-+... -+...
T Consensus 424 ~~~l~yG~~LGiGL~~MgSa----n~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s----~eai~dm~tya~ETqh 495 (926)
T COG5116 424 TPELAYGVCLGIGLINMGSA----NREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWS----VEAIEDMRTYAGETQH 495 (926)
T ss_pred cHHHHHHHHhhhcchhcccc----cHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCC----HHHHHHHHHHhcchhh
Confidence 35777777776665443211 134566666676665554445555544433322111 1111222221 12223
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHH
Q 009359 255 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH 334 (536)
Q Consensus 255 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~ 334 (536)
.++.....-.+.-+. +|. .+..-..+.+++.|.++..|.+.+-+++.---..|+-.+...+++ -..+|.+..
T Consensus 496 e~i~Rglgig~aLi~--ygr---qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh---~avsD~nDD 567 (926)
T COG5116 496 ERIKRGLGIGFALIL--YGR---QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLH---YAVSDGNDD 567 (926)
T ss_pred hhHHhhhhhhhhHhh--hhh---HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhe---eecccCchH
Confidence 444444433333222 121 112334666778888888887766655543332233322222222 225788888
Q ss_pred HHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhh-CCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHH
Q 009359 335 VRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 413 (536)
Q Consensus 335 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 413 (536)
||++|+-++|.++-. ...+++...+.| ++.++.||...+-+|+-.|..-|. +..+..+..+..|++.-+
T Consensus 568 VrRAAViAlGfvc~~------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfV 637 (926)
T COG5116 568 VRRAAVIALGFVCCD------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFV 637 (926)
T ss_pred HHHHHHHheeeeEec------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHH
Confidence 888888888877532 123444444444 445778888888888887776664 345566677778888888
Q ss_pred HHHHHHHHHHHHhhhchhhH--HHHHHHHHHHHhcCcc
Q 009359 414 RLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKV 449 (536)
Q Consensus 414 R~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~ 449 (536)
|+.|+-+++.+.-+..++.. ...+..-+.+.+.|+.
T Consensus 638 RQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 638 RQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 88888888877765554321 1233344444555543
No 136
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.0044 Score=66.90 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=96.5
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHH
Q 009359 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI 317 (536)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 317 (536)
..++|.+..-+...+..+|..|...+|.+....+.... .+.++..++.-+.|.+++||..+++....+...-+.-.-.
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 34777777766777888999999999988765443332 3467888888889999999999999988776542221111
Q ss_pred HhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHh
Q 009359 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 318 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (536)
..+.-.++....|++.++|..++-....... +....... ++..+...+.|..+.||..|+..+..+.+
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~-~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACDVMK-FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEeehhH-hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2333344444456555555543322222211 11112223 77778888999999999999999999987
No 137
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.87 E-value=2.2e-05 Score=44.36 Aligned_cols=30 Identities=43% Similarity=0.498 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAAT 193 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 193 (536)
++|.+.++++|++|+||.+|+.+|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467777888888888888888888887753
No 138
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.86 E-value=0.042 Score=62.28 Aligned_cols=292 Identities=14% Similarity=0.167 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-h-----hhhhhhHHHH
Q 009359 179 VRRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-Q-----DCVAHILPVI 246 (536)
Q Consensus 179 vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-----~~~~~l~~~l 246 (536)
-|..+++-|..++...-. ...+..+-+++.....+++..++..|+..|..++..+-+ + .+...++..+
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 366677777777654332 234455667767665566778999999988888764432 2 2334455555
Q ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh------HHHH
Q 009359 247 VNFS-QDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------ELAI 317 (536)
Q Consensus 247 ~~~~-~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~------~~~~ 317 (536)
...+ +..+..+|..+.+++.++....+...- =+.++.++.....+.++.+-..|.+.+..+....-. ....
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 4433 445789999999999999877664321 124566666666788888888888888877653211 1222
Q ss_pred HhhhHHHHHhccCC-CHHHHHHHHHHHHHhhhhh-----------------------------------CHHHHHHhHHH
Q 009359 318 QHILPCVKELSSDS-SQHVRSALATVIMGMAPIL-----------------------------------GKDATIEQLLP 361 (536)
Q Consensus 318 ~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~-----------------------------------~~~~~~~~l~~ 361 (536)
..++.++..+.+.. +..+-..++..+..++..+ +.+......+|
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 44455555554422 2333334444444331111 01111123344
Q ss_pred HHHH---hhCCCCHHHHHHHHHhhHHHHhhhchh----H----HHhhHHHHHHHhhc----------------------C
Q 009359 362 IFLS---LLKDEFPDVRLNIISKLDQVNQVIGID----L----LSQSLLPAIVELAE----------------------D 408 (536)
Q Consensus 362 ~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~----~----~~~~i~~~l~~~~~----------------------~ 408 (536)
.+.. ...|+.++||..|+..|=.+....|.. . +...++|.+..+-. +
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 4444 356899999999999887777666542 2 22345555433210 0
Q ss_pred -CChHHHHHHHHHHHHHHhhhchhh-----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhh
Q 009359 409 -RHWRVRLAIIEYIPLLASQLGVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (536)
Q Consensus 409 -~~~~~R~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 471 (536)
..| ...++..++..++..+..-+ ..+.++.++..+...++..+-.....|+..++...|..+
T Consensus 1428 ~~~W-l~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F 1495 (1780)
T PLN03076 1428 QDAW-LYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLF 1495 (1780)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccC
Confidence 113 35566666666555443321 234555666667778888899999999999998877654
No 139
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.83 E-value=0.0046 Score=57.44 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=90.2
Q ss_pred hhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc-----------c
Q 009359 210 LTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-----------R 278 (536)
Q Consensus 210 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~-----------~ 278 (536)
.+.+.++.+|..|++++|-.+-.-. ......++.+.+.++..+..+|..+++++..+...+|.... .
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS 112 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence 4455555666666666665543211 12233344444444444666666666666666665553221 2
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhh--cCh-HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC--HH
Q 009359 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI--LNP-ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KD 353 (536)
Q Consensus 279 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~--~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~ 353 (536)
..+...+.+.+.+.++++|..|++++.++.-. +.. ..+...++-....-...++.++|....-.+..++..-. .+
T Consensus 113 ~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~ 192 (298)
T PF12719_consen 113 KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQE 192 (298)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35778888888888999999999999987543 333 33334443333333344567788777777766654322 22
Q ss_pred HHHHhHHHHHHHhhCC
Q 009359 354 ATIEQLLPIFLSLLKD 369 (536)
Q Consensus 354 ~~~~~l~~~l~~~l~d 369 (536)
.+.+.++|.+..+.+.
T Consensus 193 ~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 193 RLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3345555666555543
No 140
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.076 Score=57.89 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=97.5
Q ss_pred HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHH--HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHH
Q 009359 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (536)
Q Consensus 317 ~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 394 (536)
.-.++|.|..-+...+..+|..|...+|.+....+...+ .+.++..++..+.|...+||..++++...+.-.-..-.-
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 356678887767778899999999999998765544433 567888888999999999999999988877544211111
Q ss_pred HhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 395 ~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
...+.-.+....-|.+.++|..++-....+.. +....... ++..+...+.|+-..||..|...+.++.++
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~-~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMK-FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhH-hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 12333344444445555555433222111111 11111123 667777888999999999999999999885
No 141
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.81 E-value=4.2e-05 Score=43.21 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 437 LGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 437 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
++|.+.++++|+++.||.+|+++++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 456677777777777777777777777653
No 142
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.002 Score=66.11 Aligned_cols=226 Identities=15% Similarity=0.082 Sum_probs=148.3
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcc
Q 009359 156 APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (536)
Q Consensus 156 ~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 232 (536)
-+++..+-+++.|+. .-.|..|+..|+.|.+..+= -...--|+|++.++++.+-.+.|-.-+..++.|...
T Consensus 469 ~PPeQLPiVLQVLLS------QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv 542 (1387)
T KOG1517|consen 469 TPPEQLPIVLQVLLS------QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV 542 (1387)
T ss_pred CChHhcchHHHHHHH------HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc
Confidence 344444545554443 34577789999998874221 122345899999999999999998888888887643
Q ss_pred cCc---hhhhhhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhC--CC-ccccchHHHHHHhcCCC-cHHHHHHHHH
Q 009359 233 LEP---QDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAVG--PE-PTRSDVVPAYVRLLRDN-EAEVRIAAAG 302 (536)
Q Consensus 233 ~~~---~~~~~~l~~~l~~~~~d---~~~~vR~~~~~~l~~l~~~~~--~~-~~~~~l~~~l~~ll~d~-~~~vr~~a~~ 302 (536)
=+. +-+.+..-.++.+.+.+ -+++-|..++-.|..+...+. .+ .....++.+++..+.|+ ++-.|+.++-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i 622 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI 622 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence 221 11111122233333333 256789999999998887653 22 23446888999999984 7999999999
Q ss_pred hHHHHHhhcChHHH---HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhh----CHH--------------HHHHhHHH
Q 009359 303 KVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----GKD--------------ATIEQLLP 361 (536)
Q Consensus 303 ~l~~~~~~~~~~~~---~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----~~~--------------~~~~~l~~ 361 (536)
+|+.+-+.+....+ ......-+..++.|+.+.||.+++-+++.+.... ... ...+...+
T Consensus 623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred HHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 99999887754422 1222334445668999999999999999987642 110 00122222
Q ss_pred ----HHHHhhCCCCHHHHHHHHHhhHHHHh
Q 009359 362 ----IFLSLLKDEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 362 ----~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (536)
.+...++|..+-||.....++..+.-
T Consensus 703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 703 KGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 45666788888888887777777653
No 143
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.77 E-value=0.04 Score=55.17 Aligned_cols=211 Identities=18% Similarity=0.153 Sum_probs=131.2
Q ss_pred hcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHH--HhcC-----CCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 009359 211 TQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV--NFSQ-----DKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 283 (536)
Q Consensus 211 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~~~~-----d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 283 (536)
..|.+..|-..|-..|..+...+.+...+..++..+. .... -.++.+|......|..=... ....+..+.
T Consensus 246 sad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A---a~~~~~~~~ 322 (501)
T PF13001_consen 246 SADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA---ATSFPNILQ 322 (501)
T ss_pred EeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH---HhCCccHHH
Confidence 3567778888888888888777766666666666655 2111 12667777666665543221 112345666
Q ss_pred HHHHhcCCC--cHHHHHHHHHhH---HHHHhhcChHHH---HHhhhHHHHHhc--------cCCCHHHHHHHHHHHHHhh
Q 009359 284 AYVRLLRDN--EAEVRIAAAGKV---TKICRILNPELA---IQHILPCVKELS--------SDSSQHVRSALATVIMGMA 347 (536)
Q Consensus 284 ~l~~ll~d~--~~~vr~~a~~~l---~~~~~~~~~~~~---~~~i~~~l~~l~--------~d~~~~vr~~a~~~l~~l~ 347 (536)
++...+..+ +..+|..+++.+ ......++...+ .+.++..+..+. ...+...|..+.+++|.++
T Consensus 323 i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~ 402 (501)
T PF13001_consen 323 IVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLA 402 (501)
T ss_pred HHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHH
Confidence 777777666 678888888888 777777665432 222222222223 1345789999999999999
Q ss_pred hhhCHHHH-HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHH-----HhhHHH-HHHHhhcCCChHHHHHHHHH
Q 009359 348 PILGKDAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLP-AIVELAEDRHWRVRLAIIEY 420 (536)
Q Consensus 348 ~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~i~~-~l~~~~~~~~~~~R~~a~~~ 420 (536)
+..+.-.. .-.++..++..+.++.+++|.+.-++|..+...+....- ....+. .+.....+....+|..|+++
T Consensus 403 ~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~ 482 (501)
T PF13001_consen 403 KRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKY 482 (501)
T ss_pred ccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 87654321 134667777788889999999999999999887754211 111111 22222334456677777776
Q ss_pred HHHH
Q 009359 421 IPLL 424 (536)
Q Consensus 421 l~~l 424 (536)
....
T Consensus 483 an~~ 486 (501)
T PF13001_consen 483 ANAC 486 (501)
T ss_pred HHHh
Confidence 6554
No 144
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.77 E-value=0.016 Score=52.19 Aligned_cols=222 Identities=18% Similarity=0.225 Sum_probs=128.5
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcc--cCchhhhhh
Q 009359 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL--LEPQDCVAH 241 (536)
Q Consensus 168 l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~ 241 (536)
+-..+.++++.+|..|...|+.+...++++.. ...++..+...+.|. ..+ ..++.++..+.+. ++.+ ....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~-~~~l~gl~~L~~~~~~~~~-~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACV-QPALKGLLALVKMKNFSPE-SAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhH-HHHHHHHHHHHhCcCCChh-hHHH
Confidence 34567789999999999999999998886433 345666666666443 233 3447777766632 2222 2333
Q ss_pred hHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhcChHHH
Q 009359 242 ILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELA 316 (536)
Q Consensus 242 l~~~l~~~~~--d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (536)
++..+.+... .-....|..+.+.+..+........ ....++..+++.+ +..||.--..+.+-+..+...+....+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 4444433222 2356688888888888776543211 1223455555554 345666666666666666666655555
Q ss_pred HHhhhHHHHHhc--------cCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhh
Q 009359 317 IQHILPCVKELS--------SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (536)
Q Consensus 317 ~~~i~~~l~~l~--------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (536)
.+.++..+.... +|+..-.|......+..... ....|.+..+|.++.-|.++.+.++..++.++...+..
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 555555543321 23322223333333322211 12345567777777777777777887777777777777
Q ss_pred hchhHH
Q 009359 389 IGIDLL 394 (536)
Q Consensus 389 ~~~~~~ 394 (536)
+|...+
T Consensus 239 y~~~~~ 244 (262)
T PF14500_consen 239 YGADSL 244 (262)
T ss_pred CCHHHH
Confidence 776544
No 145
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00048 Score=65.74 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=83.2
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHH
Q 009359 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV 245 (536)
Q Consensus 166 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 245 (536)
..+.+++.|.++..|...+-+++---..-+.......++++ ..+|.++.||.+|+-+++-++-. ..+.++..
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~-----D~~~lv~t 590 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCD-----DRDLLVGT 590 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEec-----CcchhhHH
Confidence 45556677777777776655554422222222333333332 25677777777777777665421 11223333
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHH--HHHhhhHH
Q 009359 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPC 323 (536)
Q Consensus 246 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~i~~~ 323 (536)
+.-+.++.++.||..++-+||-.+..-|. .....++..+..|+..-||++|+-+.+-+.-...++. -...|...
T Consensus 591 velLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~ 666 (926)
T COG5116 591 VELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKK 666 (926)
T ss_pred HHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHH
Confidence 33344445777777777777766654442 2345666667777777777777777766654433321 11334444
Q ss_pred HHHhccCC
Q 009359 324 VKELSSDS 331 (536)
Q Consensus 324 l~~l~~d~ 331 (536)
+.+.+.|+
T Consensus 667 f~~vI~~K 674 (926)
T COG5116 667 FNRVIVDK 674 (926)
T ss_pred HHHHHhhh
Confidence 44444443
No 146
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.73 E-value=0.051 Score=52.75 Aligned_cols=166 Identities=15% Similarity=0.056 Sum_probs=104.5
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhCh--Hhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhcc
Q 009359 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (536)
Q Consensus 11 i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 87 (536)
+..++-++.++|..+|..+.+.|..+....++ +...+-++.-+.+ +.|-++.||..|..+|.++-..-+.++ ..+
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~ 170 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRI 170 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHH
Confidence 56788899999999999999999988887776 4444555555555 788999999999999988865444332 223
Q ss_pred chHHHh-hhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhh-HHHhhhhhhccCCChHHHHHHH
Q 009359 88 LPPLET-LCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARV-SSCGLFHVAYPSAPEALKTELR 165 (536)
Q Consensus 88 l~~l~~-l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~-~a~~~l~~~~~~~~~~~~~~l~ 165 (536)
..+|.. +-+||+.+||..|+-.+..=- .-.|.+..-..|-+-..|. .-..++..+.........+.++
T Consensus 171 ~n~l~~~vqnDPS~EVRr~allni~vdn----------sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~ 240 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLALLNISVDN----------STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL 240 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHeeeCC----------CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh
Confidence 334333 336889999999875543211 1123333333333333333 3344555443333223334444
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH
Q 009359 166 TIYRQLCQDDMPMVRRSAATNLGK 189 (536)
Q Consensus 166 ~~l~~ll~d~~~~vr~~a~~~l~~ 189 (536)
.+.-.+.|.+..|+.++..++..
T Consensus 241 -l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 241 -LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred -hhhhcchhhhhhHHHHHHHHHHH
Confidence 44456778888899888777664
No 147
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.027 Score=62.09 Aligned_cols=283 Identities=16% Similarity=0.152 Sum_probs=176.2
Q ss_pred HHHhhhhhhccCCChHHHHHHHHHHHHhcCCC----ChHHHHHHHH--HHHHHHHH---------HhhhhhHHHHHHHHH
Q 009359 144 SSCGLFHVAYPSAPEALKTELRTIYRQLCQDD----MPMVRRSAAT--NLGKFAAT---------VEAAHLKSEIMSIFE 208 (536)
Q Consensus 144 ~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~----~~~vr~~a~~--~l~~~~~~---------~~~~~~~~~l~~~l~ 208 (536)
.+...++.+.+.++..+.-.+++.+....... -..|+..+.. ++-...+. ++++.+...-+..+.
T Consensus 803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~ 882 (2067)
T KOG1822|consen 803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV 882 (2067)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence 45667777888888877766776666655432 2334444433 33333322 234555555666777
Q ss_pred HhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccccc---hHHH
Q 009359 209 ELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRSD---VVPA 284 (536)
Q Consensus 209 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~---l~~~ 284 (536)
+.+...++..|..+.++++.++...+...+...+...+.. +-+-.++..|..-.-++|.+-++.|.-...++ -+..
T Consensus 883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 7888899999999999999999999987776666665544 44446778888888899999888775443333 3557
Q ss_pred HHHhcCCCcH-HHHHHHHHhHHHHHhhcChHH--HHHhhhHH-HHHhccCCC--HHHHHHHHHHHH------HhhhhhCH
Q 009359 285 YVRLLRDNEA-EVRIAAAGKVTKICRILNPEL--AIQHILPC-VKELSSDSS--QHVRSALATVIM------GMAPILGK 352 (536)
Q Consensus 285 l~~ll~d~~~-~vr~~a~~~l~~~~~~~~~~~--~~~~i~~~-l~~l~~d~~--~~vr~~a~~~l~------~l~~~~~~ 352 (536)
++.+-.|+.+ .|+..++.++..+....++-. +...-+.. +.-+++++. ..++...-+.+. .+...+|+
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence 7777788765 999999999999887655421 11111111 122233332 223333222222 33333332
Q ss_pred H-----------HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHH
Q 009359 353 D-----------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (536)
Q Consensus 353 ~-----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l 421 (536)
+ ......+-...-.+..+++.+..++++++.++--.-......+.+++.+..++.....-.|.+.+.++
T Consensus 1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~cl 1122 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCL 1122 (2067)
T ss_pred ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhh
Confidence 1 11122233333334455788888999999887644444444577888898888887777777766666
Q ss_pred HHHHh
Q 009359 422 PLLAS 426 (536)
Q Consensus 422 ~~l~~ 426 (536)
..++.
T Consensus 1123 rql~~ 1127 (2067)
T KOG1822|consen 1123 RQLVQ 1127 (2067)
T ss_pred hHHhH
Confidence 66554
No 148
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.12 Score=56.19 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=79.2
Q ss_pred HHhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHh--hhc-hhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh
Q 009359 394 LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLAS--QLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 394 ~~~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
+...++..+..+.. +..|++|.+++..+..+.- .++ .+...+.+...+.+++.|....||+.|+.++..+.....-
T Consensus 1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence 33555555554433 4569999999998876543 222 2223466778889999999999999999999988765221
Q ss_pred hhhhhchhHHHHhhcc-CCChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCCc
Q 009359 470 DWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDS 526 (536)
Q Consensus 470 ~~~~~~i~~~l~~~~~-d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~ 526 (536)
.+..+...+.-..... ..+....=.+..+++.++-.++-.. +.++.+..+-....|+
T Consensus 1603 ~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~ 1662 (1710)
T KOG1851|consen 1603 QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES 1662 (1710)
T ss_pred ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc
Confidence 1111111111111111 2244455567778888877766432 3344444555555565
No 149
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.1 Score=55.04 Aligned_cols=178 Identities=15% Similarity=0.207 Sum_probs=129.4
Q ss_pred HHHHHHhhh---hhCHHHHHHhHHHHHHHhhCC----CCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhc-CCCh
Q 009359 340 ATVIMGMAP---ILGKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHW 411 (536)
Q Consensus 340 ~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-~~~~ 411 (536)
.+.+..+++ ..|++.....+.|++....+. .+|+++.+|.-+++.++.. ..+ +.+.-+|.+.+.++ .+++
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p 975 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSP 975 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCc
Confidence 344444443 246566778888998888753 4689999999999999743 322 34667788888777 7889
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHH
Q 009359 412 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 491 (536)
Q Consensus 412 ~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~ 491 (536)
.+|..++-+++-++-.++. +.+-..+.+.+.+.|+++.||..|+-.+..++-+- -......++.+..++.||+..+
T Consensus 976 ~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen 976 RIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred eeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHH
Confidence 9999999999888765553 23445667889999999999999999999887651 1123567888888999999999
Q ss_pred HHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCc
Q 009359 492 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDS 526 (536)
Q Consensus 492 r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~ 526 (536)
|..|-.++..+...... .-.++|-++.-+.|+
T Consensus 1052 sdlAk~FF~Els~k~n~---iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSSKGNT---IYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHhhhcccc---hhhhchHHHHhhccC
Confidence 99999888888765421 223455555544444
No 150
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.68 E-value=0.07 Score=52.93 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=93.7
Q ss_pred HhhHHHHHHHhhcC----CChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHhCh
Q 009359 395 SQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 395 ~~~i~~~l~~~~~~----~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
...+.|.+.+...+ .+..+..+|--++..+.- ++.++ ...-+|.+...+. .++|.+|..|.-.+|.+.-.+..
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~f-c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFEF-CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34556666666554 456677777666665532 33333 3444677777766 89999999999999998766543
Q ss_pred hhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccchhhhccC
Q 009359 470 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSESVAVTYSH 535 (536)
Q Consensus 470 ~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~ 535 (536)
..++.-..|.+.+.|.+..||.+++..+..+.-.-.-. ..--++.+-.++.|++..+..+|+
T Consensus 968 --~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~K--VKGqlg~ma~~L~deda~Isdmar 1029 (1128)
T COG5098 968 --TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLK--VKGQLGKMALLLTDEDAEISDMAR 1029 (1128)
T ss_pred --hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHcccee--eccchhhhHhhccCCcchHHHHHH
Confidence 34667777888899999999999999998875331100 111266788899999999988875
No 151
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.66 E-value=0.071 Score=60.54 Aligned_cols=270 Identities=10% Similarity=0.100 Sum_probs=158.4
Q ss_pred HHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCCh-------HHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHH
Q 009359 122 VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE-------ALKTELRTIYRQLC-QDDMPMVRRSAATNLGKFAAT 193 (536)
Q Consensus 122 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-------~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~ 193 (536)
+|..+.+.+.....+++..++..|...+..+....-+ ...++++..+...+ +..+..||...++++..+...
T Consensus 1134 iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1134 IWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3444555444444444556777777666555433221 13456666665543 456789999999999998876
Q ss_pred Hhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcc-cC---c--hhhhhhhHHHHHHhcCCC-CHHHHHHHHHH
Q 009359 194 VEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL-LE---P--QDCVAHILPVIVNFSQDK-SWRVRYMVANQ 264 (536)
Q Consensus 194 ~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~---~--~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~ 264 (536)
.+.. .-+..++.++.....++++.+-..|.+.+..+.+. ++ . ......++..+.+..+.. +.++-..++..
T Consensus 1214 ~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~l 1293 (1780)
T PLN03076 1214 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAF 1293 (1780)
T ss_pred HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHH
Confidence 5431 23566778887777888888888888888877543 21 1 223344555555554432 34444455555
Q ss_pred HHHHHHHhCC--------------------------Cc---------cccchHHHHH---HhcCCCcHHHHHHHHHhHHH
Q 009359 265 LYELCEAVGP--------------------------EP---------TRSDVVPAYV---RLLRDNEAEVRIAAAGKVTK 306 (536)
Q Consensus 265 l~~l~~~~~~--------------------------~~---------~~~~l~~~l~---~ll~d~~~~vr~~a~~~l~~ 306 (536)
|..++..+-. +. .....+|.+. .+..|+.++||..|+..|-.
T Consensus 1294 L~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~ 1373 (1780)
T PLN03076 1294 LRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFD 1373 (1780)
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 5544333300 00 0011344444 34679999999999999988
Q ss_pred HHhhcChH--------HHHHhhhHHHHHhcc----------------------CCCHHHHHHHHHHHHHhhhhhCH----
Q 009359 307 ICRILNPE--------LAIQHILPCVKELSS----------------------DSSQHVRSALATVIMGMAPILGK---- 352 (536)
Q Consensus 307 ~~~~~~~~--------~~~~~i~~~l~~l~~----------------------d~~~~vr~~a~~~l~~l~~~~~~---- 352 (536)
+...+|.. .+...++|.+..+.. +.+......+..++..++..+..
T Consensus 1374 iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~ 1453 (1780)
T PLN03076 1374 TLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPT 1453 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776642 123455666543311 01112345555555555544332
Q ss_pred -HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch
Q 009359 353 -DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (536)
Q Consensus 353 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 391 (536)
....+.++..+..++..++..+-.....|+..++...|.
T Consensus 1454 L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1454 VNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 123455666677777788888888888899888766553
No 152
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.0025 Score=65.44 Aligned_cols=209 Identities=17% Similarity=0.107 Sum_probs=143.3
Q ss_pred chhhHHHhhhhhhccCCCh----HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhc
Q 009359 140 TARVSSCGLFHVAYPSAPE----ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQ 212 (536)
Q Consensus 140 ~~r~~a~~~l~~~~~~~~~----~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~ 212 (536)
-.|..|..+++.+...-+= ..--.|+|..+++++++-.+.|...+..+..+...-+. +.+.+....++.+.+.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 3577788888877654221 13345899999999999999999888888887653221 1122212222333333
Q ss_pred C---cchHHHHHHHHhHHHhhcccCc--h-hhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCcc---ccchH
Q 009359 213 D---DQDSVRLLAVEGCGALGKLLEP--Q-DCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT---RSDVV 282 (536)
Q Consensus 213 d---~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~ 282 (536)
+ -+++-|..|+..|+.+...+.- + -....++......++|+ .|-.|.-++-+||.+-+.+..... .....
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 3 1357899999999999987653 2 23345777777888885 799999999999999765543222 22356
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhc----ChH--------------HHHHhhhH----HHHHhccCCCHHHHHHHH
Q 009359 283 PAYVRLLRDNEAEVRIAAAGKVTKICRIL----NPE--------------LAIQHILP----CVKELSSDSSQHVRSALA 340 (536)
Q Consensus 283 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~----~~~--------------~~~~~i~~----~l~~l~~d~~~~vr~~a~ 340 (536)
..+..+++|+.++||.+|+-||+.+.... +.. ...+..++ .+..+.+|.++-||...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 77888899999999999999999998752 110 11122222 455667889999999988
Q ss_pred HHHHHhhh
Q 009359 341 TVIMGMAP 348 (536)
Q Consensus 341 ~~l~~l~~ 348 (536)
.++..++-
T Consensus 725 v~ls~~~~ 732 (1387)
T KOG1517|consen 725 VALSHFVV 732 (1387)
T ss_pred HHHHHHHH
Confidence 88887764
No 153
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.61 E-value=0.041 Score=49.56 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=41.6
Q ss_pred HHHhhcCcchHHHHHHHHhHHHhhcccCch----hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009359 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (536)
Q Consensus 207 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~ 269 (536)
+-..++++++.+|..|+..|+.+...++++ .-+..++.++..-+.|. ..+.. ++.++..+.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~ 68 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALV 68 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHH
Confidence 345778899999999999999998888753 23455666666666542 22333 366666666
No 154
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.61 E-value=0.11 Score=53.28 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=118.2
Q ss_pred HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH---HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh
Q 009359 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 393 ~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
.+...+.|.+...........|...+.+++++....+.... .+.++|.+++.++=++..||..+..++..+....+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 34467888888888877778899999999999887776554 367899999999999999999999999988876654
Q ss_pred h--hhhhchhHHHHhhccCCC---hHHHHHHHHHHHHHhhhhChHH---HHHhHHHHHHhhcCCccchhhhccC
Q 009359 470 D--WAMQHIVPQVLEMINNPH---YLYRMTILQAISLLAPVMGSEI---TCSQLLPVVINASKDSESVAVTYSH 535 (536)
Q Consensus 470 ~--~~~~~i~~~l~~~~~d~~---~~~r~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~vr~~a~ 535 (536)
- ...+.++|.+..+-.|++ ..||..|+++++.+.+..+... |.+.++..+.+.+.|+--.||.+|.
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 2 123678999999888776 5799999999999999877654 6788999999999999988998874
No 155
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.097 Score=52.43 Aligned_cols=138 Identities=10% Similarity=0.088 Sum_probs=93.0
Q ss_pred hHHHhhHHHHHHHhhc-----C---CChHHHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHHHhcCcchHHHHHHHH
Q 009359 392 DLLSQSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDKVYSIRDAAAN 458 (536)
Q Consensus 392 ~~~~~~i~~~l~~~~~-----~---~~~~~R~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~Vr~~a~~ 458 (536)
+...+.+++.+...+. + .+.+-.+.++..++.+...+.. ..+...+++.+...++++.--.|..|++
T Consensus 403 e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace 482 (970)
T COG5656 403 EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE 482 (970)
T ss_pred hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence 3333678888777763 1 2344556777777777663322 1234567777777889999999999999
Q ss_pred HHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhCh-HHHHHh---HHHHHHhhcCCccch
Q 009359 459 NVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITCSQ---LLPVVINASKDSESV 529 (536)
Q Consensus 459 ~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~-~~~~~~---~~~~l~~~l~d~~~~ 529 (536)
.+..+...+....+...+.....+.+++++..|+..|.-|+..+...-.- +.+.+| .+..++++.++-...
T Consensus 483 ~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD 557 (970)
T COG5656 483 FISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEID 557 (970)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccch
Confidence 99999766665555566777777888888999999999999987654321 223344 455566666654433
No 156
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.59 E-value=0.0098 Score=61.95 Aligned_cols=216 Identities=13% Similarity=0.168 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc-HHHHHHHHHhHHHHHhhc--ChHHHHHhhhHHHHHhccC
Q 009359 254 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRIL--NPELAIQHILPCVKELSSD 330 (536)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~~--~~~~~~~~i~~~l~~l~~d 330 (536)
.+..|.....+++..+. ...+..+.+++.... .... |...+..+.... +.....+.+.+++..-...
T Consensus 377 ~~~~r~~~lDal~~aGT--------~~av~~i~~~I~~~~~~~~e--a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~ 446 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGT--------NPAVKFIKDLIKSKKLTDDE--AAQLLASLPFHVRRPTEELLKELFELAKSPKVK 446 (618)
T ss_dssp -HHHHHHHHHHHHHH-S--------HHHHHHHHHHHHTT-S-HHH--HHHHHHHHHHT-----HHHHHHHHHHHT-HHHH
T ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCCHHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHhCcccc
Confidence 56677777777666542 223334444443321 1111 223333333322 2223334444443322223
Q ss_pred CCHHHHHHHHHHHHHhhhhh-CH-----------HHHHHhHHHHHH----HhhCCCCHHHHHHHHHhhHHHHhhhchhHH
Q 009359 331 SSQHVRSALATVIMGMAPIL-GK-----------DATIEQLLPIFL----SLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (536)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~~-~~-----------~~~~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 394 (536)
.+..++..++-+++.+.... .. ....+.+.+.+. ......+...+..++++||+++.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 45678888888888775432 11 112233344444 44446667888888889888764
Q ss_pred HhhHHHHHHHhhcCC---ChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHhCh
Q 009359 395 SQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 395 ~~~i~~~l~~~~~~~---~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
...++.+...+.+. ...+|.+|+.++..++... ++ .+.+.++..+.| ...+||.+|+..|-..- |
T Consensus 520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~----~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~----P 589 (618)
T PF01347_consen 520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PE----KVREILLPIFMNTTEDPEVRIAAYLILMRCN----P 589 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HH----HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------
T ss_pred -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cH----HHHHHHHHHhcCCCCChhHHHHHHHHHHhcC----C
Confidence 45667777777665 5789999999998774332 22 344444444443 34679999987765532 1
Q ss_pred hhhhhchhHHHHhh-ccCCChHHHHHHHHHH
Q 009359 470 DWAMQHIVPQVLEM-INNPHYLYRMTILQAI 499 (536)
Q Consensus 470 ~~~~~~i~~~l~~~-~~d~~~~~r~~~~~~l 499 (536)
...++..+... -.+++..|+..+...|
T Consensus 590 ---~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 590 ---SPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp ----HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 12344444443 4577888877766554
No 157
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.57 E-value=0.0031 Score=65.59 Aligned_cols=242 Identities=14% Similarity=0.156 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHhcCC-CcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHH
Q 009359 261 VANQLYELCEAVGPEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSAL 339 (536)
Q Consensus 261 ~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a 339 (536)
+...+..+...+..-. .+.+..++.++... .....|..-+.++...+. ..- +..+.+++....-.- ..+
T Consensus 345 ~~~~f~~Lv~~lr~l~-~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT----~~a----v~~i~~~I~~~~~~~-~ea 414 (618)
T PF01347_consen 345 TLSKFSRLVRLLRTLS-YEDLEELYKQLKSKSKKEQARKIFLDALPQAGT----NPA----VKFIKDLIKSKKLTD-DEA 414 (618)
T ss_dssp HHHHHHHHHHHHTTS--HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-S----HHH----HHHHHHHHHTT-S-H-HHH
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCC----HHH----HHHHHHHHHcCCCCH-HHH
Confidence 3344555555544322 23344444333333 356677777777777654 221 223333333322111 123
Q ss_pred HHHHHHhhhhhCHHHHHHhHHHHHHHhhCC----CCHHHHHHHHHhhHHHHhhhchh----------------HHHhhHH
Q 009359 340 ATVIMGMAPILGKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGID----------------LLSQSLL 399 (536)
Q Consensus 340 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~----------------~~~~~i~ 399 (536)
.+.+..+..... .....++..+..+++. .++.++..|+-+++.+....... .+.+.+.
T Consensus 415 ~~~l~~l~~~~~--~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~ 492 (618)
T PF01347_consen 415 AQLLASLPFHVR--RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLE 492 (618)
T ss_dssp HHHHHHHHHT-------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHH
T ss_pred HHHHHHHHhhcC--CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHH
Confidence 344444433221 1123445555555553 45689999999999887644322 2233344
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCc---chHHHHHHHHHHHHHHHHhChhhhhhch
Q 009359 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK---VYSIRDAAANNVKRLAEEFGPDWAMQHI 476 (536)
Q Consensus 400 ~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~~~~~~~~i 476 (536)
..+.......+...+..++.+|+.++. +..++.+...+.+. ...+|.+|+.++..+... ..+.+
T Consensus 493 ~~l~~~~~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-----~~~~v 559 (618)
T PF01347_consen 493 QELKEAVSRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-----CPEKV 559 (618)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT------HHHH
T ss_pred HHHHHHhhccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-----CcHHH
Confidence 444444456677888999999988652 12455566666655 678999999999977443 23567
Q ss_pred hHHHHhhccCC--ChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccchhhhc
Q 009359 477 VPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSESVAVTY 533 (536)
Q Consensus 477 ~~~l~~~~~d~--~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~ 533 (536)
.+.+.+++.|+ +..+|..|+..+-..-+. ...+..+...+-.|++..|+.+
T Consensus 560 ~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~------~~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 560 REILLPIFMNTTEDPEVRIAAYLILMRCNPS------PSVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHHT---------HHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCCC------HHHHHHHHHHHhhCchHHHHHH
Confidence 77788877664 678999998777664322 1222233333446777777654
No 158
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.11 Score=52.05 Aligned_cols=490 Identities=13% Similarity=0.135 Sum_probs=242.0
Q ss_pred cCcHHHHHHHhcCh--hHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCCc----
Q 009359 8 LYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGL---- 81 (536)
Q Consensus 8 ~~~i~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~---- 81 (536)
|..++..+.....+ |+..|++|+..+.++-. ....++-.+..+.+-. .++.|+--..+.|....+.--++
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs---Sp~aw~Icie~l~~~t-s~d~vkf~clqtL~e~vrekyne~nl~ 77 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS---SPNAWEICIELLINET-SNDLVKFYCLQTLIELVREKYNEANLN 77 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC---CccHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHhhccCCHH
Confidence 45678888777755 88999999999888743 2233444444444322 45566665555554443311110
Q ss_pred ---cchhccchHHHhhh-cCc----chHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHh------
Q 009359 82 ---EYANVLLPPLETLC-TVE----ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCG------ 147 (536)
Q Consensus 82 ---~~~~~ll~~l~~l~-~~~----~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~------ 147 (536)
-....+...+.... .++ .+-++.++.+.+..+.-..-+..+......++.....+.....--.-++
T Consensus 78 elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 78 ELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhh
Confidence 01223333332222 222 4567888888877766544333322222233222222211000000000
Q ss_pred --hhhhhccCCChH----------HH----HHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHHHhhhh-hHHHHHHH
Q 009359 148 --LFHVAYPSAPEA----------LK----TELRTIYRQLC----QDDMPMVRRSAATNLGKFAATVEAAH-LKSEIMSI 206 (536)
Q Consensus 148 --~l~~~~~~~~~~----------~~----~~l~~~l~~ll----~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~l~~~ 206 (536)
+...-+.+.+++ .+ +++.....+.+ +..+|.+-..+++++|.+....+-.- .-+..++.
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nL 237 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNL 237 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHH
Confidence 111111111111 11 22222222222 22378888889999999888765432 23456677
Q ss_pred HHHhhcCcchHHHHHHHHhHHHhhc-ccCchhhhhhhHHHHHH---h----cCC--CCHHHHHHHHHHHHHHHHHhCCCc
Q 009359 207 FEELTQDDQDSVRLLAVEGCGALGK-LLEPQDCVAHILPVIVN---F----SQD--KSWRVRYMVANQLYELCEAVGPEP 276 (536)
Q Consensus 207 l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~---~----~~d--~~~~vR~~~~~~l~~l~~~~~~~~ 276 (536)
+.+.++ -+++|.+|++|+-.+.. ...+.+.. .++..+.+ + ..| .+.. ..+-+..+...+|.+.
T Consensus 238 Ly~fl~--ieelR~aac~cilaiVsKkMkP~dKL-~lln~L~q~l~lfg~~s~dq~~d~d----f~e~vskLitg~gvel 310 (980)
T KOG2021|consen 238 LYKFLN--IEELRIAACNCILAIVSKKMKPMDKL-ALLNMLNQTLELFGYHSADQMDDLD----FWESVSKLITGFGVEL 310 (980)
T ss_pred HHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHhhhccccccCch----HHHHHHHHHhhcceee
Confidence 777766 56789999999877654 23332211 12222211 1 111 2222 2233444444445332
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH----
Q 009359 277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---- 352 (536)
Q Consensus 277 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---- 352 (536)
+-...++-+..++.++..+...+.. ++|.+.+.+.+.....-......+......+.+
T Consensus 311 -----~~i~s~lnseld~~~kqn~l~~ll~-------------~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~l 372 (980)
T KOG2021|consen 311 -----TIIISQLNSELDTLYKQNVLSILLE-------------IVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKAL 372 (980)
T ss_pred -----ehhHhhhhhccCHHHHHHHHHHHHH-------------HHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccc
Confidence 2222233344445555544443332 223333333333222222222222211111100
Q ss_pred -----HHHHHhHHHHHHHhh------CCCC----------HHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhh---cC
Q 009359 353 -----DATIEQLLPIFLSLL------KDEF----------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---ED 408 (536)
Q Consensus 353 -----~~~~~~l~~~l~~~l------~d~~----------~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~---~~ 408 (536)
......+...+.+.- +|++ .++|...-..+..+. .+.++.+...+-..+...+ +.
T Consensus 373 s~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~slS~al~ns~e 451 (980)
T KOG2021|consen 373 SSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQSLSAALMNSKE 451 (980)
T ss_pred cchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCc
Confidence 001111111111110 1111 356766554444443 3445544455555554443 34
Q ss_pred CChHHHHHHHHHHHHHHhhhchhhH------------HHHHHHHHHH--HhcCcchHHHHHHHHHHHHHHHHhChhhhhh
Q 009359 409 RHWRVRLAIIEYIPLLASQLGVGFF------------DDKLGALCMQ--WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 474 (536)
Q Consensus 409 ~~~~~R~~a~~~l~~l~~~~~~~~~------------~~~l~~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 474 (536)
.+|..-+.|+..+-.+++.+....+ ...+++.+.. .+..+.+.|...-.+.+-+..+.+..+ .
T Consensus 452 ~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---s 528 (980)
T KOG2021|consen 452 ESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---S 528 (980)
T ss_pred chHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---h
Confidence 5799999999999999886643221 1233333332 345677788888888887766665432 3
Q ss_pred chhHHHHhh------ccCCChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCCccchh
Q 009359 475 HIVPQVLEM------INNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDSESVA 530 (536)
Q Consensus 475 ~i~~~l~~~------~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~v 530 (536)
.-+|.+... +++.+..||..+...+.++.+.+.+.. +.+.++..+..+++-++|-.
T Consensus 529 q~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~ 592 (980)
T KOG2021|consen 529 QKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTI 592 (980)
T ss_pred hhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCc
Confidence 456665543 445688999999999999888876654 56777888888886665543
No 159
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.56 E-value=0.0097 Score=55.30 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=112.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH-------
Q 009359 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF------- 433 (536)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~------- 433 (536)
..+...++.+++.+|+.+++|+|-++- +.. ......++.+...++..+..+|..+++++.-+.-..|...+
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCL-LDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHH-hCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 334467778888888888888887763 333 23355566666666666788888888888888777765443
Q ss_pred ----HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh-hchhHHHHhhccCC----ChHHHHHHHHHHHHHhh
Q 009359 434 ----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-QHIVPQVLEMINNP----HYLYRMTILQAISLLAP 504 (536)
Q Consensus 434 ----~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~~~~d~----~~~~r~~~~~~l~~l~~ 504 (536)
...+...+.+.+.+.++.+|..|++.++++.-.-.- .. ..++..|.-.+-+| +...|+..-.++...+.
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i--~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI--SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 235777888999999999999999999998765221 12 46666665554444 45677776666666655
Q ss_pred hhC--hHHHHHhHHHHHHhhcCCccc
Q 009359 505 VMG--SEITCSQLLPVVINASKDSES 528 (536)
Q Consensus 505 ~~~--~~~~~~~~~~~l~~~l~d~~~ 528 (536)
.-. ++.+.+-++|.+..+.+.+..
T Consensus 186 s~~~~Q~~l~~~f~~~l~~~~~~~~~ 211 (298)
T PF12719_consen 186 SSPENQERLAEAFLPTLRTLSNAPDE 211 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCccc
Confidence 433 344677778888887776654
No 160
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.55 E-value=0.0098 Score=56.47 Aligned_cols=140 Identities=15% Similarity=0.165 Sum_probs=86.6
Q ss_pred HhHHHHHHHhhCC-CCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhc------CCChHHHHHHHHHHHHHHhhhc
Q 009359 357 EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG 429 (536)
Q Consensus 357 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~------~~~~~~R~~a~~~l~~l~~~~~ 429 (536)
+.=...+..-+.. +....|.+|+..+..+++..+.... +.+...+..+++ ..+|+-+.+|+..++.++....
T Consensus 209 ddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~ 287 (370)
T PF08506_consen 209 DDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS 287 (370)
T ss_dssp HSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred cCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence 3333344444432 2346788999999999887665422 333334444333 4579999999999999986431
Q ss_pred ---------------hhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHH
Q 009359 430 ---------------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMT 494 (536)
Q Consensus 430 ---------------~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~ 494 (536)
.+++..+++|-+. .-.+..+-+|..|++.+..+...++++ ....++|.+.+.+.+++.-|+..
T Consensus 288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~ty 365 (370)
T PF08506_consen 288 TTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTY 365 (370)
T ss_dssp -BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhh
Confidence 1334556666555 223456668888888888887776654 33568888888888888888888
Q ss_pred HHHHH
Q 009359 495 ILQAI 499 (536)
Q Consensus 495 ~~~~l 499 (536)
|+.++
T Consensus 366 AA~~i 370 (370)
T PF08506_consen 366 AAIAI 370 (370)
T ss_dssp HHHHH
T ss_pred hhhhC
Confidence 87664
No 161
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.49 E-value=0.019 Score=59.10 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=91.7
Q ss_pred HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC--H--------HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHH
Q 009359 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--K--------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (536)
Q Consensus 315 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~--------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (536)
...+.+++.+..-...+++.+|..++-+++.+....- . +.+.+.+...+....++.+...+...+++||+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 3344444444322223456788888888887765221 1 22333344444444445566667778888887
Q ss_pred HHhhhchhHHHhhHHHHHHHhhc---CCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 009359 385 VNQVIGIDLLSQSLLPAIVELAE---DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (536)
Q Consensus 385 l~~~~~~~~~~~~i~~~l~~~~~---~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (536)
++. ...++.+...+. .....+|.+|+.++..++..... ...+.+++++.. .+..++||.+|+..+-
T Consensus 473 ~g~--------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-~v~~~l~~i~~n--~~e~~EvRiaA~~~lm 541 (574)
T smart00638 473 AGH--------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-KVQEVLLPIYLN--RAEPPEVRMAAVLVLM 541 (574)
T ss_pred cCC--------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHcC--CCCChHHHHHHHHHHH
Confidence 754 233333333333 23467999999999887653333 233334443322 2346679998888765
Q ss_pred HHHHHhChhhhhhchhHHHHhh-ccCCChHHHHHHHHHH
Q 009359 462 RLAEEFGPDWAMQHIVPQVLEM-INNPHYLYRMTILQAI 499 (536)
Q Consensus 462 ~l~~~~~~~~~~~~i~~~l~~~-~~d~~~~~r~~~~~~l 499 (536)
..- | ....+..+... ..+++..|+..+...|
T Consensus 542 ~t~----P---~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 542 ETK----P---SVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred hcC----C---CHHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 532 1 12344444443 4467777776665543
No 162
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.31 Score=54.34 Aligned_cols=231 Identities=13% Similarity=0.117 Sum_probs=148.6
Q ss_pred hhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccchH-HHhhhcCcchHHHHHHHHHHHHHHhh
Q 009359 39 ALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPP-LETLCTVEETCVRDKAVESLCRIGSQ 116 (536)
Q Consensus 39 ~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~-l~~l~~~~~~~vr~~a~~~l~~~~~~ 116 (536)
.+||+.....-+.++.. +...+|..|.+++.+++.++..++...+...+... +..+.+-.++.-|..-.-+++.+-+.
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 34555555444444444 66788999999999999999988876666655554 66676667777777767777777665
Q ss_pred cCh---hhHHhhHHHHHHHHhcCcc-cchhhHHHhhhhhhccCCChH---HHHHHHHHHHH-hcCCCC--hHHHHHHHHH
Q 009359 117 MRE---QDVVEHFIPLVKRLAAGEW-FTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQ-LCQDDM--PMVRRSAATN 186 (536)
Q Consensus 117 ~~~---~~~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~-ll~d~~--~~vr~~a~~~ 186 (536)
... .+....-+..+..+..|.. +.++..+...+..+....++- +....+..+.. ++.++. .+|+..--++
T Consensus 947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen 947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccc
Confidence 532 3333333456667777764 578888888888887776664 22333333333 344443 3455544455
Q ss_pred HH------HHHHHHhhh-----------hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHh
Q 009359 187 LG------KFAATVEAA-----------HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249 (536)
Q Consensus 187 l~------~~~~~~~~~-----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 249 (536)
+. ++...++++ .+....+-...-++.++++.+...++.++..+.-+.+.....+.+++.+..+
T Consensus 1027 ~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1027 FNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSL 1106 (2067)
T ss_pred cccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHH
Confidence 54 555555542 1112222222223455678899999999999988777766677888888888
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 009359 250 SQDKSWRVRYMVANQLYELC 269 (536)
Q Consensus 250 ~~d~~~~vR~~~~~~l~~l~ 269 (536)
+.....-.|.+...++-.++
T Consensus 1107 l~s~~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQLV 1126 (2067)
T ss_pred hcchhhhhhhhHHhhhhHHh
Confidence 88777777777777666654
No 163
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0033 Score=55.76 Aligned_cols=168 Identities=13% Similarity=0.126 Sum_probs=111.7
Q ss_pred HHHHHhhcCcchHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 009359 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (536)
Q Consensus 205 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 282 (536)
......+.+.+|.....++..+..++.+-++ ......++..+.+-+++....|-.+++.+++.+...+++.... .+-
T Consensus 91 ~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ld 169 (334)
T KOG2933|consen 91 KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-ELD 169 (334)
T ss_pred HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3344456777888888888888877765443 1224446666677777877788899999999999887765432 222
Q ss_pred HHHHHhc---CCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH----HHH
Q 009359 283 PAYVRLL---RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DAT 355 (536)
Q Consensus 283 ~~l~~ll---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~ 355 (536)
..+..++ .+++.-||..|-++|..+.....+..+...++|. ....++++|..++..+......+|- ..+
T Consensus 170 ~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~----~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~ 245 (334)
T KOG2933|consen 170 DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPI----LQHSNPRVRAKAALCFSRCVIRLGVLPVLLQG 245 (334)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHH----HhhhchhhhhhhhccccccceeccccchhhHh
Confidence 2223333 4556779999999999999988887666666665 4567889999888887777666652 122
Q ss_pred HHhHHHHHHHhhCCCCHHHHHH
Q 009359 356 IEQLLPIFLSLLKDEFPDVRLN 377 (536)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~ 377 (536)
...+.+.+..-+.|.-+.+|++
T Consensus 246 ~~dl~~a~~~~~~d~Lp~~~~~ 267 (334)
T KOG2933|consen 246 SCDLSRAAQEQGSDKLPELREA 267 (334)
T ss_pred HHHHHHHHHhhhcccccccccc
Confidence 3344444545555555555543
No 164
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.21 Score=54.49 Aligned_cols=156 Identities=14% Similarity=0.121 Sum_probs=98.9
Q ss_pred HHHhhhHHHHH-hccCCCHHHHHHHHHHHHHhh--hhhC-HHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch
Q 009359 316 AIQHILPCVKE-LSSDSSQHVRSALATVIMGMA--PILG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (536)
Q Consensus 316 ~~~~i~~~l~~-l~~d~~~~vr~~a~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 391 (536)
+...++..+.. ...+.+|++|.++++.+.... ..++ .+.-.+.+...+...+.|.+-+||+.|+.++..+..+--.
T Consensus 1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence 34555566653 345677999999988887653 3344 3334578888999999999999999999999988764322
Q ss_pred hHHHhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhhchh--hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhC
Q 009359 392 DLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (536)
Q Consensus 392 ~~~~~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (536)
....+..-+....... ..+...+-.++..++.++-.++-. .+.++.+..+..+..|+ ..++.++-+++..+-....
T Consensus 1603 ~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1603 QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh
Confidence 2111112222222222 223444556777777777654421 13444455565666665 7799999999998887766
Q ss_pred hhhh
Q 009359 469 PDWA 472 (536)
Q Consensus 469 ~~~~ 472 (536)
.+|.
T Consensus 1682 D~W~ 1685 (1710)
T KOG1851|consen 1682 DTWR 1685 (1710)
T ss_pred hhhh
Confidence 6543
No 165
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.36 E-value=0.019 Score=59.19 Aligned_cols=161 Identities=14% Similarity=0.088 Sum_probs=97.1
Q ss_pred HhHHHHHHHhhCC----CCHHHHHHHHHhhHHHHhhhchh------HHHhhHHHHHHHhh----cCCChHHHHHHHHHHH
Q 009359 357 EQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELA----EDRHWRVRLAIIEYIP 422 (536)
Q Consensus 357 ~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~------~~~~~i~~~l~~~~----~~~~~~~R~~a~~~l~ 422 (536)
..++..+..++++ ..+.+|..+.-+++.+......+ ...+.+++.+...+ ++.+...+..++++|+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 3455556666654 35689999999999988643221 12244555555443 3456667788888888
Q ss_pred HHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccC--CChHHHHHHHHHHH
Q 009359 423 LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAIS 500 (536)
Q Consensus 423 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--~~~~~r~~~~~~l~ 500 (536)
.++. ......+.|.+. .-.+....+|.+|+.++..+.... ...+.+.+.+++.| .+..+|..|+..+-
T Consensus 472 N~g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~-----p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 472 NAGH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD-----PRKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred ccCC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC-----chHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 7543 222233333332 122445679999999999887653 34566667776665 47889999988887
Q ss_pred HHhhhhChHHHHHhHHHHHHhhcCCccchhhhc
Q 009359 501 LLAPVMGSEITCSQLLPVVINASKDSESVAVTY 533 (536)
Q Consensus 501 ~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~ 533 (536)
..-+. ...+-.+...+-.|++..|+.+
T Consensus 542 ~t~P~------~~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 542 ETKPS------VALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred hcCCC------HHHHHHHHHHHhhcCcHHHHHH
Confidence 75332 1222233344455666666654
No 166
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=97.32 E-value=0.12 Score=51.40 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=79.5
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhCh---Hhhhhcccccc---------cc---ccCCchHHHHHHHHHHhch
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGE---ERTRKELIPFL---------SE---NNDDDDEVLLAMAEELGVF 74 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~---~~~~~~l~~~l---------~~---~~d~~~~vr~~a~~~l~~l 74 (536)
.++.+.+.+.|.+...|+++++++.++.+.++- +... +++.+. .+ ..+.++.+...+.-.++ +
T Consensus 247 iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi-~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-l 324 (993)
T COG5234 247 IVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFI-DIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-L 324 (993)
T ss_pred HHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHH-HHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-H
Confidence 356677888899999999999999999887762 2221 122222 22 23455666555544444 3
Q ss_pred hcccCCccchhc-cchHHHhhhc--------CcchHHHHHHHHHHHHHHhhcC---hhhHHhhHHHHHH-HHhcCcccch
Q 009359 75 IPYVGGLEYANV-LLPPLETLCT--------VEETCVRDKAVESLCRIGSQMR---EQDVVEHFIPLVK-RLAAGEWFTA 141 (536)
Q Consensus 75 ~~~~~~~~~~~~-ll~~l~~l~~--------~~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~-~l~~~~~~~~ 141 (536)
+.. ++-++.+. +.+++..-++ .+-..+|+.++-.+..+..-.+ .+.....+.-++. +..-|++..+
T Consensus 325 a~~-~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~v 403 (993)
T COG5234 325 AGA-GLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNV 403 (993)
T ss_pred hhc-cccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhh
Confidence 332 22333332 3333332221 2234577776655444433211 1234444444443 3677888889
Q ss_pred hhHHHhhhhhhccC
Q 009359 142 RVSSCGLFHVAYPS 155 (536)
Q Consensus 142 r~~a~~~l~~~~~~ 155 (536)
|.+|..++.++..+
T Consensus 404 Rr~a~Aal~E~iGR 417 (993)
T COG5234 404 RRAATAALFEVIGR 417 (993)
T ss_pred hhHHHHHHHHHhcc
Confidence 99887777666655
No 167
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.013 Score=52.08 Aligned_cols=137 Identities=12% Similarity=0.139 Sum_probs=66.5
Q ss_pred hhCCCCHHHHHHHHHhhHHHHhhhchhH---HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHH--HHHHHH
Q 009359 366 LLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGAL 440 (536)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~--~~l~~~ 440 (536)
.|.+.+|+.....+..+..+...-. +. ....++..+.+-++++...+=.+|+.+++.+...++..... +.++-.
T Consensus 96 ~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 96 KLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ 174 (334)
T ss_pred HhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433221 11 11233334444445555555556666666665555543322 222222
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhC
Q 009359 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 441 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~ 507 (536)
++.--.+.+.-||..|-.+|..+..+..+ ..+++.|.....+.+..+|..+..++......+|
T Consensus 175 Ll~ka~~dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 175 LLHKASQDNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 22222344455666666666666665543 3455555555555566666666555555555444
No 168
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.20 E-value=0.29 Score=48.72 Aligned_cols=147 Identities=13% Similarity=0.131 Sum_probs=73.1
Q ss_pred hhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh
Q 009359 237 DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (536)
Q Consensus 237 ~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (536)
.....++..+..++.. .+...=..+...|..+..+ |.-. ....++..+-+... ..+....+.+.+..+++....
T Consensus 172 ~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y-~~iP~~sl~~~i~vLCsi~~--~~~l~~~~w~~m~nL~~S~~g 248 (464)
T PF11864_consen 172 DEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY-GDIPSESLSPCIEVLCSIVN--SVSLCKPSWRTMRNLLKSHLG 248 (464)
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-CcCChHHHHHHHHHHhhHhc--ccccchhHHHHHHHHHcCccH
Confidence 3444555555555433 2333335566666666542 2111 11122222222211 125566677777777753222
Q ss_pred HHHHHhhhHHH--HHhccCCCHHHHHHHHHHHHHhhhhhCHHHH------HHhHHHHHHHhhCCCCHHHHHHHHHhhHHH
Q 009359 314 ELAIQHILPCV--KELSSDSSQHVRSALATVIMGMAPILGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (536)
Q Consensus 314 ~~~~~~i~~~l--~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (536)
......+...+ ......++..+-+.|+..++.+.-..+.+.+ ...++|.+...++..++.|-...+..+..+
T Consensus 249 ~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 249 HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence 22223333333 1111234566777888888887654432221 134889999999876665544455544444
Q ss_pred H
Q 009359 386 N 386 (536)
Q Consensus 386 ~ 386 (536)
.
T Consensus 329 l 329 (464)
T PF11864_consen 329 L 329 (464)
T ss_pred H
Confidence 4
No 169
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=97.14 E-value=0.066 Score=47.59 Aligned_cols=133 Identities=12% Similarity=0.129 Sum_probs=84.5
Q ss_pred hhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHH---
Q 009359 94 LCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQ--- 170 (536)
Q Consensus 94 l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~--- 170 (536)
+.+..++......+++|..++.+-. ...+.++..+..+.+.+....+..+.+++..++..-+.- .+.+.+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~-f~~L~~~L~~~~~ 85 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH-FPFLQPLLLLLIL 85 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHh
Confidence 4455566666666677766665431 333445555555555554444555566666655543321 1222222222
Q ss_pred ------hcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-cCcchHHHHHHHHhHHHhhc
Q 009359 171 ------LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGK 231 (536)
Q Consensus 171 ------ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~ 231 (536)
.-.+..++...+.+.++..++...+. ...++++.+...+ ++.++.++..+++.+..+++
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 11345677778878888888887655 6678999999999 78888999999999999884
No 170
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.06 E-value=0.096 Score=49.86 Aligned_cols=125 Identities=15% Similarity=0.211 Sum_probs=79.4
Q ss_pred HHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhc------cCCCHHHHHHHHHHHHHhhhhh-----C----------H
Q 009359 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELS------SDSSQHVRSALATVIMGMAPIL-----G----------K 352 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~------~d~~~~vr~~a~~~l~~l~~~~-----~----------~ 352 (536)
..-|.+|+.-+..+++..+.... +.+...+..++ ...+|+-+.+|+..++.++... | .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 45667777777777776654421 22222222222 2577888888888888775432 1 4
Q ss_pred HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHH
Q 009359 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (536)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l 421 (536)
+++...++|.+. .-.+..+-+|..|++.+..+-+.+..+.+ ..++|.+...+.+++.-++.-|+.++
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 667777888777 33345677888888888888888777665 66888888888888888887776654
No 171
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.02 E-value=0.053 Score=57.44 Aligned_cols=225 Identities=18% Similarity=0.136 Sum_probs=128.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch------------HHHHHHhcCCC-cHHHHHHHHHhHHHHH
Q 009359 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV------------VPAYVRLLRDN-EAEVRIAAAGKVTKIC 308 (536)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l------------~~~l~~ll~d~-~~~vr~~a~~~l~~~~ 308 (536)
++..+.+.+-++.|.+|..++.++-.+.+..|.......+ +..+-.+..|+ ...||.+++++++.+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 3334444444566666666666666655554443322111 11111122222 2479999999999999
Q ss_pred hhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC--HHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHH
Q 009359 309 RILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (536)
Q Consensus 309 ~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (536)
+......+ ...+..+.++...++|.+|...+..+........ -..+...+++.+...++|.+..||..|+..+..+.
T Consensus 158 ~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~ 236 (1549)
T KOG0392|consen 158 KHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAP 236 (1549)
T ss_pred HhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhh
Confidence 87765544 5556777777778899999887776665443211 11334677888999999999999999998887776
Q ss_pred hhhch---hH---HHhhHHHHHHHhhcCCCh---HHHHHHHHHHHHH--HhhhchhhHHHHHHHHHHHHhcCcchHHHHH
Q 009359 387 QVIGI---DL---LSQSLLPAIVELAEDRHW---RVRLAIIEYIPLL--ASQLGVGFFDDKLGALCMQWLKDKVYSIRDA 455 (536)
Q Consensus 387 ~~~~~---~~---~~~~i~~~l~~~~~~~~~---~~R~~a~~~l~~l--~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 455 (536)
..... .. +...+...+.++.. -.| .+|....+.+... ............+.|-++.++......||.+
T Consensus 237 s~~v~l~~~~i~~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a 315 (1549)
T KOG0392|consen 237 SIQVKLMVQKIAKLVHTLWSFLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRA 315 (1549)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH
Confidence 55411 11 11222333333222 222 2222222211111 0000000112346666777788888899999
Q ss_pred HHHHHHHHHHHhC
Q 009359 456 AANNVKRLAEEFG 468 (536)
Q Consensus 456 a~~~l~~l~~~~~ 468 (536)
+++.+..+.+.-+
T Consensus 316 ~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 316 ALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHhcCC
Confidence 9999998887643
No 172
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.96 E-value=0.013 Score=42.91 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=54.2
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHH
Q 009359 402 IVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480 (536)
Q Consensus 402 l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l 480 (536)
....++|+...+|..++..+..+...-. .....+.++.+++..++|+++.|=.+|++++..++...+ +.++|.|
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~~L 82 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLPIL 82 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHHHH
Confidence 3444566777777777777777766555 333456677777777778777787788888777776542 3566776
Q ss_pred HhhccCC
Q 009359 481 LEMINNP 487 (536)
Q Consensus 481 ~~~~~d~ 487 (536)
.+.+.|+
T Consensus 83 ~~~y~~~ 89 (92)
T PF10363_consen 83 LDEYADP 89 (92)
T ss_pred HHHHhCc
Confidence 6665554
No 173
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.89 E-value=0.01 Score=43.47 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=60.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhH
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (536)
+......++|+.+-||..++..|..+...-. .....+.++..+...++|+++.|-..|++++..++...+. .++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl 79 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVL 79 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHH
Confidence 3445566678888888888888888887655 4444577888888888888888888888888888875543 355
Q ss_pred HHHHHhcCC
Q 009359 244 PVIVNFSQD 252 (536)
Q Consensus 244 ~~l~~~~~d 252 (536)
|.+.+...|
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 665555444
No 174
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.84 E-value=0.017 Score=48.44 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHH
Q 009359 101 CVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180 (536)
Q Consensus 101 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr 180 (536)
.||..|+.+|..+++..++..+..+ ...+..|.+...+.. -...+.-++.|+++.||
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~y----W~~llP~~~~~~~~~-------------------~~sLlt~il~Dp~~kvR 57 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGY----WPALLPDSVLQGRPA-------------------TPSLLTCILKDPSPKVR 57 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhh----HHHHCCCCCCcCCCC-------------------CcchhHHHHcCCchhHH
Confidence 3799999999999998776543322 111121210000000 01234456679999999
Q ss_pred HHHHHHHHHHHHHHhh-----hh-----------------hHHHHHHHHHHhhcCc-chHHHHHHHHhHHHhhcccCch-
Q 009359 181 RSAATNLGKFAATVEA-----AH-----------------LKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ- 236 (536)
Q Consensus 181 ~~a~~~l~~~~~~~~~-----~~-----------------~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~- 236 (536)
.+|+.++..+.+...+ +. ....+-..+...++.+ +..+-...++++..+.+..+-.
T Consensus 58 ~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r 137 (182)
T PF13251_consen 58 AAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR 137 (182)
T ss_pred HHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh
Confidence 9999999998865321 00 0111222223333332 4455556666666666655432
Q ss_pred ---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009359 237 ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (536)
Q Consensus 237 ---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~ 270 (536)
.+...++..+...+.+.+..||.++..+++.+..
T Consensus 138 L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 138 LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 2333444444455555666666666666665554
No 175
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.79 E-value=0.073 Score=56.47 Aligned_cols=168 Identities=18% Similarity=0.231 Sum_probs=107.7
Q ss_pred HHHHHHhHHHHHhhcChHHH------HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHH--HHhHHHHHHHhhC
Q 009359 297 RIAAAGKVTKICRILNPELA------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLK 368 (536)
Q Consensus 297 r~~a~~~l~~~~~~~~~~~~------~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~ 368 (536)
|..|-.++..+++.+|...+ .+-++..+.......+..+ ...+.+..+....+. .+ .-..+|.+..++.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~--~s~~vf~s~~~~m~s-~l~~~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFL--SSFEVFNSLAPLMHS-FLHPLGSLLPRLFFFVR 826 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchh--hhHHHHHHHHHhhhh-hhhhhhhhhhHHHHhcc
Confidence 78888899999998887532 2223333333333221110 111112222221121 11 2356788889999
Q ss_pred CCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHH-HHHHHHHHHHHhhhch--hhHHHHHHHHHHHHh
Q 009359 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR-LAIIEYIPLLASQLGV--GFFDDKLGALCMQWL 445 (536)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R-~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l 445 (536)
.....+|.+++.+++.+.+....+.+ ..++..+..++++.+.-+| +.+...+..+....+. -.+...+++.++..+
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 99999999999999999887666654 4555666666776654444 4455555555544332 224566888999999
Q ss_pred cCcchHHHHHHHHHHHHHHHHhC
Q 009359 446 KDKVYSIRDAAANNVKRLAEEFG 468 (536)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~~~~~ 468 (536)
+|....||.+|-+++..+...++
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999987654
No 176
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.79 E-value=0.35 Score=43.02 Aligned_cols=192 Identities=15% Similarity=0.164 Sum_probs=110.0
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHH--
Q 009359 171 LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-- 248 (536)
Q Consensus 171 ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-- 248 (536)
+.+..++++....+++|..++.+-. ...+.++..+..+.+.+....+.-+...+..+-..-+. ..+.+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HFPFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHH
Confidence 5566777777777777777776531 33344555555566555555555555555554432111 11222222222
Q ss_pred -------hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhc--ChHHHHH
Q 009359 249 -------FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRIL--NPELAIQ 318 (536)
Q Consensus 249 -------~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~--~~~~~~~ 318 (536)
.-.+..|+...+.+.++..++...+. ....+++.+...+ ++.++.++..+++++..+++.- +......
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~ 162 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK 162 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 11245778888888888888887665 3456888888999 7888899999999999999532 2222222
Q ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHhhhh-hC---HHHHHHhHHHHHHHhhCCCC
Q 009359 319 HILPCVKELSSDSSQHVRSALATVIMGMAPI-LG---KDATIEQLLPIFLSLLKDEF 371 (536)
Q Consensus 319 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~---~~~~~~~l~~~l~~~l~d~~ 371 (536)
.+.+. +..+..+.+-...+..+..+... ++ .+.+...++..+.+.....+
T Consensus 163 vl~~~---l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 163 VLQKK---LSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHh---cCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 22232 23455555555444444433221 11 22344566666666665554
No 177
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.78 E-value=0.035 Score=46.49 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=72.5
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHH
Q 009359 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIY 168 (536)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l 168 (536)
+++..+..|+++.+|..|+.++..+.+... +.+......+ .+..+..-+.. .+ .....++...+
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk---------~~L~~Ae~~~---~~~~sFtslS~---tL-a~~i~~lH~~L 106 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSK---------PFLAQAEESK---GPSGSFTSLSS---TL-ASMIMELHRGL 106 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccH---------HHHHHHHhcC---CCCCCcccHHH---HH-HHHHHHHHHHH
Confidence 355667789999999999999988877531 1221111111 00000000000 00 01233344444
Q ss_pred HHhcC-CCChHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccC
Q 009359 169 RQLCQ-DDMPMVRRSAATNLGKFA-----ATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 169 ~~ll~-d~~~~vr~~a~~~l~~~~-----~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 234 (536)
...++ ..+..+-...++++..+. ..++ ..+...++..+..++.+.|..+|..++-+++.+....+
T Consensus 107 l~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~-~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 107 LLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP-PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHccCChhhcC-HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 44443 335566667777777665 2343 35556677777777777888888888888887765543
No 178
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.73 E-value=0.028 Score=46.41 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=54.1
Q ss_pred hHHHhhHHHHHHHhhcCCC-hHHHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 392 DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 392 ~~~~~~i~~~l~~~~~~~~-~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
+.+....+..+...++|+. ...+.+++.++..+.+..|.+. +.++++|.+++.+.......|+..+..|+.+...
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4455566777788888876 4455677888877777666544 4577888888888877778888888888777654
No 179
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.66 E-value=0.42 Score=46.90 Aligned_cols=94 Identities=17% Similarity=0.110 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH--H--HHHHHHHHHHhcCCC
Q 009359 100 TCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--L--KTELRTIYRQLCQDD 175 (536)
Q Consensus 100 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l~~~l~~ll~d~ 175 (536)
-.-|-.+.++|+.++..++.+......-+++....++++...|..++.++...+...... . ...+.+.|...++++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 456778899999999998776666666667777788888888888888887776554432 1 245667777777644
Q ss_pred C-----------hHHHHHHHHHHHHHHHH
Q 009359 176 M-----------PMVRRSAATNLGKFAAT 193 (536)
Q Consensus 176 ~-----------~~vr~~a~~~l~~~~~~ 193 (536)
. ..+|..|...+..+...
T Consensus 181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~ 209 (441)
T PF12054_consen 181 EPPYYDELVPSLKRLRTECQQLLATFRDV 209 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 23555555555555543
No 180
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.60 E-value=0.81 Score=44.92 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=42.3
Q ss_pred hHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc---chHHHHHHhcCCC
Q 009359 216 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS---DVVPAYVRLLRDN 292 (536)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~ll~d~ 292 (536)
...|..|+++||.+...++........-+.+...+++++..-|..++-.+.+.+.......... .+.+.+...|.++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 4456666666666666665544333333456666666666666666666666666555433322 3444444444433
No 181
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.54 E-value=0.84 Score=44.16 Aligned_cols=195 Identities=12% Similarity=0.096 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009359 105 KAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184 (536)
Q Consensus 105 ~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~ 184 (536)
.....+..+....++++..++++-++..+..+....++... .... ..+ .....+..+++.+++-+...++
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~-----~~~~-~~~----~~~~~fl~lL~~~d~~i~~~a~ 122 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFH-----DDAL-LKK----KTWEPFFNLLNRQDQFIVHMSF 122 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHH-----HHhh-ccc----cchHHHHHHHcCCchhHHHHHH
Confidence 34445555555556666666677776666655322222111 1100 011 1223334466677889999999
Q ss_pred HHHHHHHHHHhh---hhhHHHHHHHHHHhhcCc-chHHHHHHHHhHHHhhcccCc-hhh-hhhhHHHHHHhcCCC--CHH
Q 009359 185 TNLGKFAATVEA---AHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP-QDC-VAHILPVIVNFSQDK--SWR 256 (536)
Q Consensus 185 ~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~-~~~-~~~l~~~l~~~~~d~--~~~ 256 (536)
..+..++..... ......+++.+...++.. +...+..++.++..+...-.- ..+ ....++.+..+++.. +..
T Consensus 123 ~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q 202 (429)
T cd00256 123 SILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ 202 (429)
T ss_pred HHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence 999998754221 122333555555565543 345566677788777643221 111 122445555554432 345
Q ss_pred HHHHHHHHHHHHHHHh-C-CCccccchHHHHHHhcCCCc-HHHHHHHHHhHHHHHh
Q 009359 257 VRYMVANQLYELCEAV-G-PEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICR 309 (536)
Q Consensus 257 vR~~~~~~l~~l~~~~-~-~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~ 309 (536)
....++-++.-+.-.- + .......+++.+..++++.. ..|-.-++..+..+..
T Consensus 203 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 203 LQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 5555555555543110 1 11112357788887776542 2344444555555544
No 182
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.7 Score=49.16 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=89.5
Q ss_pred cCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhh---hC-HHHHHHhHHHHHH
Q 009359 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI---LG-KDATIEQLLPIFL 364 (536)
Q Consensus 289 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~---~~-~~~~~~~l~~~l~ 364 (536)
..|-++++|..+++.|+.+++.++.-.+....+..+-..+.|.+-.||..+++++..+... .+ -+.|...+-..++
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4799999999999999999999888777777778888889999999999999999998765 11 1233444444444
Q ss_pred Hhh-CCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009359 365 SLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (536)
Q Consensus 365 ~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~ 422 (536)
.+. .|.+..||...+..+-... ....+...=+-.+..+.-|.+.+++.++...+.
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~---~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLS---SSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHh---cccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 444 6667778776555433321 111111222333556667777777777766653
No 183
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.12 Score=47.50 Aligned_cols=169 Identities=14% Similarity=0.050 Sum_probs=95.6
Q ss_pred hhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhc-C
Q 009359 141 ARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQ-D 213 (536)
Q Consensus 141 ~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~-d 213 (536)
.|..+..-+..+++.++.. ..-..+..+...+++++..+|..|+..++..+...++. ......++.+...++ |
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 3444444444444443332 11223334444888999999999999999998876652 122234555555554 5
Q ss_pred cchHHHHHHHHhHHHhhcccCch---hhhhhhHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCCC--ccccc-hHHHH
Q 009359 214 DQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPE--PTRSD-VVPAY 285 (536)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d--~~~~vR~~~~~~l~~l~~~~~~~--~~~~~-l~~~l 285 (536)
....+|..|+.+++.+.+...+. ...-.-...+...+++ .+.+.+.-++..++.+......+ ..... +...+
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 55688999999999998876652 1111223455666666 45666677777777776542211 11111 22223
Q ss_pred HHhcCCCcHHHHHHHHHhHHHHHh
Q 009359 286 VRLLRDNEAEVRIAAAGKVTKICR 309 (536)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~ 309 (536)
..+....+.+++..++.++-....
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHHH
Confidence 333344455666666655554443
No 184
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.23 E-value=1.3 Score=42.96 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=49.3
Q ss_pred HHHHHHHHhc-CcchHHHHHHHHHHHHHHHHhCh--hhhh-hchhHHHHhhccCCChHHHHHHHHHHHHHh
Q 009359 437 LGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP--DWAM-QHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (536)
Q Consensus 437 l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~--~~~~-~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~ 503 (536)
++..+.+++. +.++.+-..||.=+|.++++++. .... -..-..++++++++|..||..|+.|++.+.
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4555666663 44566777888889999998742 2111 235666888999999999999999999874
No 185
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=1.4 Score=43.18 Aligned_cols=428 Identities=16% Similarity=0.124 Sum_probs=223.9
Q ss_pred hhhhccccccccccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHH
Q 009359 44 RTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVV 123 (536)
Q Consensus 44 ~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 123 (536)
..++.++.++..+.+..+.+|...+-++..++-.++. ....+..++....+.+.. +..+..+.+.+|.+...
T Consensus 59 slrdsl~thl~~l~~~~~~i~tQL~vavA~Lal~~~~--W~n~I~e~v~~~~~~~~~------~~~lLeiL~VlPEE~~~ 130 (559)
T KOG2081|consen 59 SLRDSLITHLKELHDHPDVIRTQLAVAVAALALHMPE--WVNPIFELVRALSNKHPA------VPILLEILKVLPEETRD 130 (559)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhHh--hcchHHHHHHHhhcCCcc------HHHHHHHHHhCcHhhcc
Confidence 4456677787776666667888888888887665552 222344455555443321 33445555555443211
Q ss_pred hhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHH--HHhhhh
Q 009359 124 EHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDM---PMVRRSAATNLGKFAA--TVEAAH 198 (536)
Q Consensus 124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~---~~vr~~a~~~l~~~~~--~~~~~~ 198 (536)
.... .. ..|.. ..+..+ ......++..+..++++++ ..+-..+.++++.... .++++.
T Consensus 131 ~~~~-----~~-----a~Rr~--e~~~~l-----~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~ 193 (559)
T KOG2081|consen 131 IRLT-----VG-----ANRRH--EFIDEL-----AAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQ 193 (559)
T ss_pred hhhh-----hh-----hhhHH--HHHHHH-----HHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHH
Confidence 1100 00 00000 000000 0123445556666665543 4455666777776655 444443
Q ss_pred hHH--HHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-hh---h------hhhhHHHHHH-hcCCCCHHHHHHHHHHH
Q 009359 199 LKS--EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QD---C------VAHILPVIVN-FSQDKSWRVRYMVANQL 265 (536)
Q Consensus 199 ~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~---~------~~~l~~~l~~-~~~d~~~~vR~~~~~~l 265 (536)
+.. .++...+..+++ ...-..|.+++-.+...... +. + ...+++...+ .....+..-+.+.++.+
T Consensus 194 v~a~~pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIF 271 (559)
T KOG2081|consen 194 VLASFPLITLAFRSLSD--DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIF 271 (559)
T ss_pred HHhhhHHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHH
Confidence 322 355556666663 33445555555444322211 00 0 1122333222 23345666788888999
Q ss_pred HHHHHHhCCCcc--cc---chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh---HH-------HHHhhhHHHHHhc--
Q 009359 266 YELCEAVGPEPT--RS---DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---EL-------AIQHILPCVKELS-- 328 (536)
Q Consensus 266 ~~l~~~~~~~~~--~~---~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~-------~~~~i~~~l~~l~-- 328 (536)
..+++.+-.... .+ .++..++-.-..++.+|-.+....+..+.+.+-. +. +...++..+..-.
T Consensus 272 tel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~ql 351 (559)
T KOG2081|consen 272 TELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQL 351 (559)
T ss_pred HHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccC
Confidence 998876532111 11 2444455555777788888888887777765421 11 1112222221111
Q ss_pred -c---------CCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhH
Q 009359 329 -S---------DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (536)
Q Consensus 329 -~---------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 398 (536)
. ++-...|......+..++-.+|.+...+.+.-.+.. +...|+.-++++-.+..+.+.+.++. ..+
T Consensus 352 p~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i 427 (559)
T KOG2081|consen 352 PPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTI 427 (559)
T ss_pred CCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cch
Confidence 1 112357777778777777777766544443333322 45678899999999999988877654 467
Q ss_pred HHHHHHhhcCC--ChHHHHHHHHHHHHHHhhhchhh-HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhc
Q 009359 399 LPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 475 (536)
Q Consensus 399 ~~~l~~~~~~~--~~~~R~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 475 (536)
+|.+.+...+. ...+|.+++..++.+.+.+.... +.+-++..+...+.+.. .-.++..+...++..+... -..
T Consensus 428 ~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~--~~~ 503 (559)
T KOG2081|consen 428 MPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQ--MTC 503 (559)
T ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHH--hhh
Confidence 77777665432 34599999999999888766432 33444555556666554 4444455555555443221 122
Q ss_pred hhHHHHh-------hccCCChHHHHHHHHHHHHHhhhhChH
Q 009359 476 IVPQVLE-------MINNPHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 476 i~~~l~~-------~~~d~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
.+|.+.. ...+ ..... .++.++.+...++..
T Consensus 504 l~~~~~~l~~~l~~~~~~--~e~a~-l~~~~s~i~~~lp~~ 541 (559)
T KOG2081|consen 504 LIPSLLELIRSLDSTQIN--EEAAC-LLQGISLIISNLPAH 541 (559)
T ss_pred hhHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCHh
Confidence 3333322 2222 22222 666666666666644
No 186
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=1.7 Score=44.08 Aligned_cols=357 Identities=11% Similarity=0.048 Sum_probs=196.5
Q ss_pred HHHhhhhhhccCCChHHHHHHHHHHHHhcC-----C---CChHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHh
Q 009359 144 SSCGLFHVAYPSAPEALKTELRTIYRQLCQ-----D---DMPMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEEL 210 (536)
Q Consensus 144 ~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~-----d---~~~~vr~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~~ 210 (536)
++..++..+..+-+++....+++.+...++ + +++.-.+.|++.++.+..-+.. ......+++++...
T Consensus 389 aal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~ 468 (970)
T COG5656 389 AALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPA 468 (970)
T ss_pred HHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHh
Confidence 344444444445555567777777777662 2 2355566788888887763332 23345577888878
Q ss_pred hcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-Cccccch---HHHHH
Q 009359 211 TQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSDV---VPAYV 286 (536)
Q Consensus 211 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l---~~~l~ 286 (536)
++++.--.|..|++.++.+...+++......+.....+++++.+-.|+..++-++..+...-.. +....++ +..++
T Consensus 469 f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLL 548 (970)
T COG5656 469 FRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLL 548 (970)
T ss_pred hcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHH
Confidence 8899889999999999999877777666666777777888888888999888888776543221 1112233 34444
Q ss_pred HhcCCCcHHHHHHHHHhHH-HHHhhcChH--HHHHhhhH----HHHHhccCC---C------HHHHHHHHHHHHHhhhhh
Q 009359 287 RLLRDNEAEVRIAAAGKVT-KICRILNPE--LAIQHILP----CVKELSSDS---S------QHVRSALATVIMGMAPIL 350 (536)
Q Consensus 287 ~ll~d~~~~vr~~a~~~l~-~~~~~~~~~--~~~~~i~~----~l~~l~~d~---~------~~vr~~a~~~l~~l~~~~ 350 (536)
.+-++-+-++-..+++.+- .+.+.+.+- .+...+.. ....+..++ + .-.-...++++..+.-.+
T Consensus 549 sLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSl 628 (970)
T COG5656 549 SLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSL 628 (970)
T ss_pred HhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhc
Confidence 4445555566555555543 333333221 11222222 222222222 1 112222334444433333
Q ss_pred CH-----HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch-hHHHhhHHHHHHHhhcCCCh-HHHHHHHHHHHH
Q 009359 351 GK-----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPL 423 (536)
Q Consensus 351 ~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~~~~~-~~R~~a~~~l~~ 423 (536)
.. ......+.|.+.-.++++-.++-..|+..+....-.... +.+.-.+...+.+...+... ..-..+..++..
T Consensus 629 en~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~n 708 (970)
T COG5656 629 ENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDN 708 (970)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 21 123345667666667776666666666666554321110 11222344444445555443 344566667777
Q ss_pred HHhhhchhh-----HHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhcc------CCChH
Q 009359 424 LASQLGVGF-----FDDKLGALCMQWLKDKVY--SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYL 490 (536)
Q Consensus 424 l~~~~~~~~-----~~~~l~~~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~------d~~~~ 490 (536)
+...-+.++ +.+.+..++...+..+.. +=+..+++.+..+.-+++.+ ..++.+|.+..... |+...
T Consensus 709 fityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~-Ll~qy~plfi~vags~l~~~dElg~ 787 (970)
T COG5656 709 FITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDE-LLSQYLPLFISVAGSGLKMIDELGP 787 (970)
T ss_pred HHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccch-hHHhhhHHHHHHHhhhhhccccccc
Confidence 765444333 234455555566655544 34667788888888777765 23456676655432 44444
Q ss_pred HHHHHHHHHHH
Q 009359 491 YRMTILQAISL 501 (536)
Q Consensus 491 ~r~~~~~~l~~ 501 (536)
.+..+++.+-+
T Consensus 788 ~sv~aleliin 798 (970)
T COG5656 788 ASVYALELIIN 798 (970)
T ss_pred hhhhHHHHHHH
Confidence 55555554433
No 187
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.14 E-value=0.09 Score=43.44 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=86.2
Q ss_pred HHhHHHHHHHhhCCC-CHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHh-hcCCChHHHHHHHHHHHHHHhh-hchhh
Q 009359 356 IEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQ-LGVGF 432 (536)
Q Consensus 356 ~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~-~~~~~~~~R~~a~~~l~~l~~~-~~~~~ 432 (536)
.+.+++.+...++.+ ++.+|..+++.+|.++. +.+-.. +.+....... ..+.+.......+... ... ...++
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~-k~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKH-KSIQKSLDSKSSENSNDESTDISLPMM---GISPSSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHH-hcccccCCccccccccccchhhHHhhc---cCCCchHHH
Confidence 577888888888755 57899999998888763 222211 1000000000 0011111111111100 000 23344
Q ss_pred HHHHHHHHHHHHhcCcchH-HHHHHHHHHHHHHHHhChhhh--hhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 433 FDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~-Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
+....+..+.+.++|+.-. -...++.++..+.+..|.... .+.++|.+.+.++..+...|+..++-++.+..
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5566677788888888754 455788888888887776543 37899999998887666888888888887764
No 188
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.06 E-value=1.1 Score=42.74 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=41.0
Q ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhc
Q 009359 164 LRTIYRQLC-QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK 231 (536)
Q Consensus 164 l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 231 (536)
+...+..++ ++.+.......+.+++.....+ .....+.++..+.+.++|....+|..-+..++....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 333344333 2455666666777777666555 223345667777777777777777777777766654
No 189
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=0.62 Score=49.57 Aligned_cols=230 Identities=17% Similarity=0.090 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHhhcCh------hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcC-
Q 009359 101 CVRDKAVESLCRIGSQMRE------QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQ- 173 (536)
Q Consensus 101 ~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~- 173 (536)
.+|..-...+..++..+.. ......++.++..+...+....|.+|..+...+... +.....++.+
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~--------Lv~va~~Ls~~ 241 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTA--------LVSVALNLSSH 241 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHh
Confidence 3455556666666665543 233455778888888888878888776544443221 1111122221
Q ss_pred ------------CCChHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHH-----HHhhcCcchHHHHHHHHhHHHhhcccCc
Q 009359 174 ------------DDMPMVRRSAATNLGKFAATV-EAAHLKSEIMSIF-----EELTQDDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 174 ------------d~~~~vr~~a~~~l~~~~~~~-~~~~~~~~l~~~l-----~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
..+..-|. -...|-...+.. +...-...++..+ .....|-.+.+|..+++.|+.....+|.
T Consensus 242 ~~~tskQleaEr~k~r~~ra-rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~ 320 (1048)
T KOG2011|consen 242 NDKTSKQLEAERNKSRGNRA-RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPE 320 (1048)
T ss_pred hHHHHHHHHHHhcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccH
Confidence 12212222 111111111111 1111111122222 2234688899999999999999998887
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhc-CCCcHHHHHHHHHhHHHHH--
Q 009359 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKIC-- 308 (536)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~-- 308 (536)
--.....+.++-=.++|++-.||..+.++|..+...-.. +.+.+.+-.-++++. .|-+..||...+..+-...
T Consensus 321 ~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~ 400 (1048)
T KOG2011|consen 321 IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS 400 (1048)
T ss_pred HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Confidence 555556667776688999999999999999888765111 112223344444554 6778888888777665542
Q ss_pred hhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHH
Q 009359 309 RILNPELAIQHILPCVKELSSDSSQHVRSALATVIM 344 (536)
Q Consensus 309 ~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~ 344 (536)
..+..+.+ ..+..++.|.+++++.++...+.
T Consensus 401 g~L~d~di-----~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 401 GLLSDKDI-----LIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred cccChhHH-----HHHHHHHhccCcchHHHHHHHHH
Confidence 23333322 22335567888888888776654
No 190
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.03 E-value=0.24 Score=41.31 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=66.3
Q ss_pred HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHH---HhhHHHHHHHhhcCCChHHHHHHHHHHHHH---Hhhhc
Q 009359 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLL---ASQLG 429 (536)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l---~~~~~ 429 (536)
...++|.+...+.+.+...|-.|...+..+...-+.+.+ ...+++.+.+.++..+..+...++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 357899999999988888888888888888877444433 355666677788899999999999999988 55666
Q ss_pred hhh--HHHHHHHHHHHH
Q 009359 430 VGF--FDDKLGALCMQW 444 (536)
Q Consensus 430 ~~~--~~~~l~~~l~~~ 444 (536)
+.. +..+++|.+.-+
T Consensus 116 ~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLF 132 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 543 346667765533
No 191
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.01 E-value=0.13 Score=48.64 Aligned_cols=140 Identities=13% Similarity=0.179 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCc-------chHHHHHHHHhHHHhhcc--
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-------QDSVRLLAVEGCGALGKL-- 232 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~-------~~~vr~~a~~~l~~l~~~-- 232 (536)
...+..+.+.+.+.+...|..|+..|.. +.-...++|.+..++.+. +...-...+.....+...
T Consensus 177 q~yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 177 QLYFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 3445555566666777888887766654 333466788888776553 222333333444444332
Q ss_pred cCchhhhhhhHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc--HHHHH
Q 009359 233 LEPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE--AEVRI 298 (536)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~----------~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~--~~vr~ 298 (536)
+.-+.+...++|.+..++ .+..|.+|..++..++.++..++... ....+...+.+.+.|+. .....
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 222556677777776654 24679999999999999999888653 23355656666555543 23367
Q ss_pred HHHHhHHHHH
Q 009359 299 AAAGKVTKIC 308 (536)
Q Consensus 299 ~a~~~l~~~~ 308 (536)
+|+.++..++
T Consensus 330 GAi~GL~~lG 339 (343)
T cd08050 330 GAIVGLSALG 339 (343)
T ss_pred HHHHHHHHhC
Confidence 7777777764
No 192
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.90 E-value=2.1 Score=42.66 Aligned_cols=143 Identities=13% Similarity=0.093 Sum_probs=76.8
Q ss_pred hHHHHHHhcCC-CcHHHHHHHHHhHHHHHhh--cChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHH
Q 009359 281 VVPAYVRLLRD-NEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357 (536)
Q Consensus 281 l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~--~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 357 (536)
++..+..++.. ..++.-.+++..+..+..+ ++.+.+ ..++..|+....-. .....+-+++..++..... .
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl-~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g----~ 249 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL-SPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG----H 249 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH-HHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH----H
Confidence 44444444432 2233336778888887763 344333 44555555443322 3344444556666543222 2
Q ss_pred hHHHHHHHhhC--C----CCHHHHHHHHHhhHHHHhhhchhHH------HhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 009359 358 QLLPIFLSLLK--D----EFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (536)
Q Consensus 358 ~l~~~l~~~l~--d----~~~~vr~~a~~~l~~l~~~~~~~~~------~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~ 425 (536)
..+..+...+. | ++..+-.+|+..++.+.-..|.+.+ ...++|.+...++.++..+=...+..+..+.
T Consensus 250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 23344555552 2 2334445777777777654433322 1238888888888777777667777776666
Q ss_pred -hhhch
Q 009359 426 -SQLGV 430 (536)
Q Consensus 426 -~~~~~ 430 (536)
+.++.
T Consensus 330 ~~~~~~ 335 (464)
T PF11864_consen 330 DGKYGR 335 (464)
T ss_pred hHhhhh
Confidence 44444
No 193
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.89 E-value=0.29 Score=40.79 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=85.5
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhh-hchhh--HHHHHHHHHHHHhcCcchHHHHHHHHHHHHH---HHHhCh
Q 009359 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRL---AEEFGP 469 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~-~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l---~~~~~~ 469 (536)
+..+|.+.+-+.......|..|...+..+... .+.+. +.+++++.+.+.|+..+++|..+++.+|..+ ....|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 56888888888888888899999999888877 33333 2467778888999999999999999999999 555665
Q ss_pred hhhh--hchhHHHHhhccC-----------CChHHHHHHHHHHHHHhhhhChHHH
Q 009359 470 DWAM--QHIVPQVLEMINN-----------PHYLYRMTILQAISLLAPVMGSEIT 511 (536)
Q Consensus 470 ~~~~--~~i~~~l~~~~~d-----------~~~~~r~~~~~~l~~l~~~~~~~~~ 511 (536)
.... .+++|.+.-+.+. .+..++..+-+++..+.+..|++.+
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 4222 4556655532221 2456778888888888888887643
No 194
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=95.86 E-value=2.3 Score=42.76 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHh----hccCCChHHH
Q 009359 418 IEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE----MINNPHYLYR 492 (536)
Q Consensus 418 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~----~~~d~~~~~r 492 (536)
+..++.+.+.+.+..+.+.+. .+...+ ..+...+|-+.+..++.+.+..-++..++.+.|.+.. ++.|++|.++
T Consensus 462 L~l~~~~~~~l~~~~i~qv~~-~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~ 540 (559)
T PF14868_consen 462 LSLLSFFIQLLDPQLIEQVLT-ELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLH 540 (559)
T ss_pred HHHHHHHHHhcChHHHHHHHH-HHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHH
Confidence 334444444455544444333 334444 4555669999999999998887666566778888766 4779999999
Q ss_pred HHHHHHHHHHhhhhC
Q 009359 493 MTILQAISLLAPVMG 507 (536)
Q Consensus 493 ~~~~~~l~~l~~~~~ 507 (536)
..|+++++.++...+
T Consensus 541 q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 541 QHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999999987654
No 195
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.84 E-value=1.8 Score=41.40 Aligned_cols=227 Identities=16% Similarity=0.136 Sum_probs=125.4
Q ss_pred HHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHH--HHhhcCc-chHHHHHHHHhHHHhhccc-Cc
Q 009359 162 TELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIF--EELTQDD-QDSVRLLAVEGCGALGKLL-EP 235 (536)
Q Consensus 162 ~~l~~~l~~-ll~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l--~~~l~d~-~~~vr~~a~~~l~~l~~~~-~~ 235 (536)
....+.+.. ++.|+ ..||.++.+.+..+...... ..+.+.=++.+ ..+-.|. +..=|..|++.+..+.+.- +.
T Consensus 24 ~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 334444443 44454 99999999988877653221 11111111111 1222332 3445889999998888763 23
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH-
Q 009359 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE- 314 (536)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~- 314 (536)
+.+...++..+..+.++++.+.|..+.+++.+++-.-+.-.....-+..+.+.+.|...++-...+.++-.+...-...
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 4456678888888999999999999999999987542221112234566666666655555556666655555432211
Q ss_pred -----HHHHhhhHHHHHh----ccCCCH-HHHHHHHHHHHHhhhhhCHHHH----HHhHHHHHHHhhCCCCHHHHHHHHH
Q 009359 315 -----LAIQHILPCVKEL----SSDSSQ-HVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDEFPDVRLNIIS 380 (536)
Q Consensus 315 -----~~~~~i~~~l~~l----~~d~~~-~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (536)
.-.+.++..+... .++... ..-..+..++..+.+.++.=.+ .-.-+..++..+.-+.+++|...+.
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 1123333333333 122211 1223334445544443321000 0134566777788888889988887
Q ss_pred hhHHHHhhh
Q 009359 381 KLDQVNQVI 389 (536)
Q Consensus 381 ~l~~l~~~~ 389 (536)
.+-.+...-
T Consensus 263 ll~dllrik 271 (371)
T PF14664_consen 263 LLFDLLRIK 271 (371)
T ss_pred HHHHHHCCC
Confidence 777766543
No 196
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.77 E-value=1.7 Score=40.54 Aligned_cols=53 Identities=11% Similarity=0.227 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhh
Q 009359 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (536)
Q Consensus 256 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 310 (536)
+-+.-+.+.++++.+.++.- ....+..-+.++.|.+..||..|++.+..+|+.
T Consensus 39 k~k~lasq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 44556677777777665531 124556667778888888888888888888874
No 197
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=1.3 Score=41.02 Aligned_cols=172 Identities=13% Similarity=0.121 Sum_probs=106.4
Q ss_pred cchHHHHHHHHHHHHHHhhcChh-hHH--hhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH----HHHHHHHHHH-
Q 009359 98 EETCVRDKAVESLCRIGSQMREQ-DVV--EHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYR- 169 (536)
Q Consensus 98 ~~~~vr~~a~~~l~~~~~~~~~~-~~~--~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~- 169 (536)
-+..-++.|+.-|..++..++.. .+. ..+.|++. ..++.+..+|..|+..++.+..+.+.- .....++.|.
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 35667888999999998887642 222 22445555 777778899999999999998887663 1222334443
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHhhhh--h-HHHHHHHHHHhhcC--cchHHHHHHHHhHHHhhcccCc--hhhhhhh
Q 009359 170 QLCQDDMPMVRRSAATNLGKFAATVEAAH--L-KSEIMSIFEELTQD--DQDSVRLLAVEGCGALGKLLEP--QDCVAHI 242 (536)
Q Consensus 170 ~ll~d~~~~vr~~a~~~l~~~~~~~~~~~--~-~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l 242 (536)
.+..|.+-.+|..|+-+++.+.....+-. + .-.=...+...+++ .+...+..++..++.+...-.. +......
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 34456777889999999999988765421 1 00113345556666 4566778888888877654322 1112222
Q ss_pred HHH-HHHhcCCCCHHHHHHHHHHHHHHHH
Q 009359 243 LPV-IVNFSQDKSWRVRYMVANQLYELCE 270 (536)
Q Consensus 243 ~~~-l~~~~~d~~~~vR~~~~~~l~~l~~ 270 (536)
++. +..+...-++.++..+...+-.+..
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 232 3334444567777777666555443
No 198
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=2.4 Score=41.58 Aligned_cols=299 Identities=13% Similarity=0.165 Sum_probs=156.8
Q ss_pred HHHHHHHHHhhcCcc---hHHHHHHHHhHHHhhc--ccCchhhhh--hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 009359 201 SEIMSIFEELTQDDQ---DSVRLLAVEGCGALGK--LLEPQDCVA--HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273 (536)
Q Consensus 201 ~~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~--~~~~~~~~~--~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~ 273 (536)
..++..+..++++.+ ..+-...+++++.... .++.+.... .++..+...+++. ..-..+.+++..+.....
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~ 229 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDD--ELHEEATECICALLYCSL 229 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhh
Confidence 344555555554432 3455566666666554 333332222 2344444555533 233344444444432211
Q ss_pred C---C-cc------ccchHHHHHH-hcCCCcHHHHHHHHHhHHHHHhhc------ChHHHHHhhhHHHHHhccCCCHHHH
Q 009359 274 P---E-PT------RSDVVPAYVR-LLRDNEAEVRIAAAGKVTKICRIL------NPELAIQHILPCVKELSSDSSQHVR 336 (536)
Q Consensus 274 ~---~-~~------~~~l~~~l~~-ll~d~~~~vr~~a~~~l~~~~~~~------~~~~~~~~i~~~l~~l~~d~~~~vr 336 (536)
. . .+ ...+++...+ .....+.+-+.+...-+..+++.. +++.+ -.++..+.-....+++++-
T Consensus 230 ~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evi 308 (559)
T KOG2081|consen 230 DRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVI 308 (559)
T ss_pred hhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhh
Confidence 1 0 01 1122333222 223344555565566565555532 12211 1222333333456666666
Q ss_pred HHHHHHHHHhhhhhC---HHHHHHhHHHHHHHh-------hC---------C---CCHHHHHHHHHhhHHHHhhhchhHH
Q 009359 337 SALATVIMGMAPILG---KDATIEQLLPIFLSL-------LK---------D---EFPDVRLNIISKLDQVNQVIGIDLL 394 (536)
Q Consensus 337 ~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~-------l~---------d---~~~~vr~~a~~~l~~l~~~~~~~~~ 394 (536)
......+..+.+..- .+.....+-|++.++ .+ + +..+-|..+...+..+...+|.+.-
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~ 388 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDEC 388 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 666655555544321 122222222333332 21 1 1236788888888888888887654
Q ss_pred HhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHhChhh-
Q 009359 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDW- 471 (536)
Q Consensus 395 ~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~- 471 (536)
.+...-.+.+ +...|+.-++++..+..+++.+.+. ...++|.+++.+. +....+|..++..+|.+.+.+....
T Consensus 389 lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~ 464 (559)
T KOG2081|consen 389 LKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPE 464 (559)
T ss_pred HHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcH
Confidence 4433333333 5678999999999999999988765 3456666666553 3334499999999999998775431
Q ss_pred hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhCh
Q 009359 472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS 508 (536)
Q Consensus 472 ~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~ 508 (536)
..+.++..+...+.+.. ....+..++..++..+..
T Consensus 465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~ 499 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRV 499 (559)
T ss_pred HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHH
Confidence 12334444444444433 566666777777666543
No 199
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.65 E-value=2 Score=40.55 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009359 105 KAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184 (536)
Q Consensus 105 ~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~ 184 (536)
.++..+..+......++...+++-++..+...+...++. ..-... .........+..++.+.++.+-..+.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~l--f~~~a~-------~~k~~~~~~fl~ll~r~d~~iv~~~~ 135 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDL--FHDYAH-------KLKRTEWLSFLNLLNRQDTFIVEMSF 135 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHH--HHHHHH-------hhhccchHHHHHHHhcCChHHHHHHH
Confidence 566777777777777777777777776666544322222 111111 11122355677888888888888777
Q ss_pred HHHHHHHHHHhhh---hhHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccCc------hhhhhhhHHHHHHhcCCCC
Q 009359 185 TNLGKFAATVEAA---HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP------QDCVAHILPVIVNFSQDKS 254 (536)
Q Consensus 185 ~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~~ 254 (536)
..+..++...... ...+.....+...++. .+...+..++.+|..+...-.- .+-...+++.+. .+.-+
T Consensus 136 ~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~--s~~~~ 213 (442)
T KOG2759|consen 136 RILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA--STKCG 213 (442)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh--ccCcc
Confidence 7777777643221 1123334445555554 5556777888888877653211 111223333332 23335
Q ss_pred HHHHHHHHHHHHHHH
Q 009359 255 WRVRYMVANQLYELC 269 (536)
Q Consensus 255 ~~vR~~~~~~l~~l~ 269 (536)
-.+....+-++..+.
T Consensus 214 ~QlQYqsifciWlLt 228 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLT 228 (442)
T ss_pred hhHHHHHHHHHHHhh
Confidence 556666665555543
No 200
>PF05536 Neurochondrin: Neurochondrin
Probab=95.57 E-value=3.1 Score=42.20 Aligned_cols=175 Identities=11% Similarity=0.106 Sum_probs=109.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcCcch-HHHHHHHHhHHHhhcccC-chh-hhhhhHHHHHH
Q 009359 176 MPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLE-PQD-CVAHILPVIVN 248 (536)
Q Consensus 176 ~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~-~~~-~~~~l~~~l~~ 248 (536)
....+..|...|..|+. ++ +.-.-.-+|.+.+.+...+. .+-..+.++|..++..-. .+. .....++.+.+
T Consensus 70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 34566777777777775 22 12234567888888877776 888899999998883221 122 23346666666
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccc------cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC--------hH
Q 009359 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTR------SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--------PE 314 (536)
Q Consensus 249 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~--------~~ 314 (536)
...+ .......+...+..+....+.+... ..+++.+-+.+......-+-..+.-++.+....+ .+
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 6655 4566778888888877766633221 1345555555555555566666777777765542 11
Q ss_pred HHHHhhhHHHHHhcc-CCCHHHHHHHHHHHHHhhhhhCHH
Q 009359 315 LAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKD 353 (536)
Q Consensus 315 ~~~~~i~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~ 353 (536)
.+...+...+..++. ...+.-|..+......+.+.+|.+
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 344556566655554 345777888888888887777754
No 201
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.54 E-value=0.64 Score=42.84 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=16.5
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHh
Q 009359 476 IVPQVLEMINNPHYLYRMTILQAISLLA 503 (536)
Q Consensus 476 i~~~l~~~~~d~~~~~r~~~~~~l~~l~ 503 (536)
++.++...+.|++..|+-.+++.+-.-.
T Consensus 226 lv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 226 LVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 4555555666666666666666655543
No 202
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.51 E-value=0.31 Score=39.31 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=74.2
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhh----hhchhHHHH
Q 009359 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL 481 (536)
Q Consensus 406 ~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~i~~~l~ 481 (536)
+..++|..-...+..+..= ..| ....+..+.+.+.++++.|...|+..+..+.+++|..+. ...++..|.
T Consensus 13 l~~~dw~~il~icD~I~~~--~~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 13 LTSENWGLILDVCDKVKSD--ENG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CCCcCHHHHHHHHHHHhcC--Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 3456787666655555421 122 344566677888899999999999999999999998654 367888888
Q ss_pred hhccC-CChHHHHHHHHHHHHHhhhhChH
Q 009359 482 EMINN-PHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 482 ~~~~d-~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
.++.+ .+..|+..++..+..++..+..+
T Consensus 87 kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 87 KLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 88887 68899999999999999887743
No 203
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.48 E-value=2.6 Score=40.63 Aligned_cols=270 Identities=14% Similarity=0.045 Sum_probs=126.0
Q ss_pred ChHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHhhcCcc--hHHHHHHHHhHHHhhcccCc----hhhhhhhHH
Q 009359 176 MPMVRRSAATNLGKFAATVE-----AAHLKSEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLLEP----QDCVAHILP 244 (536)
Q Consensus 176 ~~~vr~~a~~~l~~~~~~~~-----~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~ 244 (536)
+.++-..|+++++.+..... ++.....++......+.+++ ..+...++.++.. +.++. ......++.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHH
Confidence 55677778888887763311 12223345555555555443 2333344444432 22332 122333444
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHh-h
Q 009359 245 VIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTR--SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH-I 320 (536)
Q Consensus 245 ~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-i 320 (536)
.+...-+ =++..+-.....++..+....+..+.. ..-+|.+...+-+....+|..|......+...++++..... +
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 4444333 234455566666666666555443322 23566666666677788888877777666666665422221 2
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHH
Q 009359 321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (536)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~ 400 (536)
.+.+.... .++ .+....++-+..+...-+......++...+..++.+.- +..-......+.
T Consensus 217 ~~~~~~~~-~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~ 277 (372)
T PF12231_consen 217 LEDLQRSL-ENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLK 277 (372)
T ss_pred HHHhcccc-ccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHH
Confidence 12221111 111 33333333344333321222223333343333332221 000111234444
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH-HHH-----HHHHHHHHhcCcch----HHHHHHHHHHHHHHHH
Q 009359 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-DDK-----LGALCMQWLKDKVY----SIRDAAANNVKRLAEE 466 (536)
Q Consensus 401 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~-~~~-----l~~~l~~~l~d~~~----~Vr~~a~~~l~~l~~~ 466 (536)
.....+++++..+|..|..+-..+......... .+. ..|+....=..... .+|..++..++.+...
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 555566667777777777766666554332221 111 22332222222222 6777777777766543
No 204
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=3.7 Score=42.13 Aligned_cols=69 Identities=19% Similarity=0.036 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhccc
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH-----LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 233 (536)
+..+...+...|..||..+.+.+..+...-|.+. ..+.-+..++.++.|.-.-+|..++-.|..+.+..
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 3444445555556666666666666655544321 11222334455555655556666666665555433
No 205
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=4 Score=42.42 Aligned_cols=176 Identities=13% Similarity=0.104 Sum_probs=119.2
Q ss_pred hhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh----
Q 009359 141 ARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDM-----PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT---- 211 (536)
Q Consensus 141 ~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~-----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l---- 211 (536)
.|......+...+...++....-+...+-+++.|.+ |..-.+++-.+..++.+.+... ...+|.+++..
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik 517 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIK 517 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccc
Confidence 466666666667777776667777777777777665 7778888899999998877532 22345555443
Q ss_pred -cCcchHHHHHHHHhHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHH
Q 009359 212 -QDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVR 287 (536)
Q Consensus 212 -~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ 287 (536)
+-.++..-..+...++..+..+++ ..+.+..+|.+.+.+... +.-..+...+..+++.+..+. +..+++..+..
T Consensus 518 ~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 518 LSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred cccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 223677778888999999888776 345677888888887533 233345556888887766543 23456666666
Q ss_pred hcCC--CcHHHHHHHHHhHHHHHhhcChHHHHHhh
Q 009359 288 LLRD--NEAEVRIAAAGKVTKICRILNPELAIQHI 320 (536)
Q Consensus 288 ll~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~i 320 (536)
.+.. -.+..|...++++|.+.+.+.++...+.+
T Consensus 596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl 630 (982)
T KOG2022|consen 596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYL 630 (982)
T ss_pred HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHH
Confidence 5543 23567899999999999988866543333
No 206
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.39 E-value=3.5 Score=41.64 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=85.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH--------LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP- 235 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~--------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~- 235 (536)
+..+..++++++...|-...++++++...+..+. -.+.++..+.+.+.|.++.+|..|+..+..+.+.-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 4566778899999999999999999887665422 2456788888899999999999999999999876544
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009359 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (536)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 271 (536)
......+...+...+.|.+..||..+++.+..+...
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 122456777888889999999999999998887643
No 207
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.37 E-value=3.1 Score=40.84 Aligned_cols=189 Identities=14% Similarity=0.219 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHhh---h---hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcc
Q 009359 160 LKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEA---A---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~~~~---~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 232 (536)
..+++...+...++++ +|.--+...++++.+.+.... + .+.+.++|.+...++.+-.+.--.+.+.++.+.+.
T Consensus 68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455556666666554 688889999999998876443 2 46788999999999877666667778888888776
Q ss_pred cCch---hhhhhhHHHHHHhcCCCCHHHH---HHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCCcHHHHHHHHH
Q 009359 233 LEPQ---DCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAG 302 (536)
Q Consensus 233 ~~~~---~~~~~l~~~l~~~~~d~~~~vR---~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~ll~d~~~~vr~~a~~ 302 (536)
.+.. .....++|.+. ...-|+-| -+..+.|..+.+.-+... ..+.++..+.+++.....+ ..+..
T Consensus 148 ~~~~~~p~~y~~L~~~Ll---~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~ 222 (435)
T PF03378_consen 148 RPSSPLPDAYKQLFPPLL---SPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFD 222 (435)
T ss_dssp SS--S--TTTGGGHHHHT---SGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHH
T ss_pred CCCCCCcHHHHHHHHHHc---CcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHH
Confidence 6521 22334444443 22233322 233344444443333222 2345778888888765433 45777
Q ss_pred hHHHHHhhcChHH---HHHhhhHHHH-HhccCCCHHHHHHHHHHHHHhhhhhCHH
Q 009359 303 KVTKICRILNPEL---AIQHILPCVK-ELSSDSSQHVRSALATVIMGMAPILGKD 353 (536)
Q Consensus 303 ~l~~~~~~~~~~~---~~~~i~~~l~-~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 353 (536)
-+..+...++.+. +.+.++..+. .+.+.+.+..++..+..++.++...|.+
T Consensus 223 LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 223 LLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp HHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 8888888887754 3344444443 3334566666666666666666555544
No 208
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.34 E-value=3.1 Score=40.65 Aligned_cols=252 Identities=10% Similarity=0.093 Sum_probs=143.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC-hH-HHHHhhhHH
Q 009359 250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PE-LAIQHILPC 323 (536)
Q Consensus 250 ~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~-~~-~~~~~i~~~ 323 (536)
..+++|.--..+...|..+......+. ....++..++.++..+|+.-|......+..+..... .. .+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456678777777777777766544433 344677888888888888888888888877655332 21 222333334
Q ss_pred HHHhccC-CCHHHHHHHHHHHHHhhhhhC---HHHHHHhHHHHHHHhhCCCCH-HHHHHHHHhhHHHHhhhchhHHHhhH
Q 009359 324 VKELSSD-SSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQSL 398 (536)
Q Consensus 324 l~~l~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~i 398 (536)
+.....+ ....--..+++.++.+...+. ++.....+...++.+.+.+.. ........++..++.. ...+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k--dp~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK--DPSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--CchhHHHH
Confidence 4443332 222233456677777776554 333344444555555555432 2344455555555432 12233455
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHH---HHHHHHHHhcCcchHHHHHHHHHHHH--HHHHhChhhhh
Q 009359 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLKDKVYSIRDAAANNVKR--LAEEFGPDWAM 473 (536)
Q Consensus 399 ~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~Vr~~a~~~l~~--l~~~~~~~~~~ 473 (536)
+..+.+.---.+..-....+.-+..+...+++..+... +...+.+++++++..|-+.|+..+.. +...+.. ..
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~ 334 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS 334 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence 55555555556666677888888888888887766543 45557778899999999999887643 2332211 12
Q ss_pred hchhHHHHhhcc-----CCChHHHHHHHHHHHHHhhh
Q 009359 474 QHIVPQVLEMIN-----NPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 474 ~~i~~~l~~~~~-----d~~~~~r~~~~~~l~~l~~~ 505 (536)
..++|.+..-+. +=+..+|..+..++.-+...
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 445555554322 22777999999999888764
No 209
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=95.34 E-value=0.47 Score=41.64 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCC-CChHHHHHH-HHHHHHHHHHHhhhhhHHHH
Q 009359 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQD-DMPMVRRSA-ATNLGKFAATVEAAHLKSEI 203 (536)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d-~~~~vr~~a-~~~l~~~~~~~~~~~~~~~l 203 (536)
...++..+.+++....|..|+.++.......+. ..++.+...+.+ ++|.+-... ...++.+.... +..
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~ 121 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKKLTE----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEA 121 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHH
Confidence 345566666776666777777776554433222 234455555543 467666554 44455554321 446
Q ss_pred HHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009359 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (536)
Q Consensus 204 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~ 270 (536)
.+.+.+.+.+++.-+|..++..+...... ...+.++..+.....|++..||.++..+|..++.
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 67888888898888888887776544443 3456777888888889999999999999887764
No 210
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=3.9 Score=41.78 Aligned_cols=319 Identities=12% Similarity=0.101 Sum_probs=153.1
Q ss_pred ccchhhHHHhhhhhhccCCChH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh----
Q 009359 138 WFTARVSSCGLFHVAYPSAPEA--LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT---- 211 (536)
Q Consensus 138 ~~~~r~~a~~~l~~~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l---- 211 (536)
++..-..+..+++....=++-. .-+..++.+...++ ..++|.+|+.++-++...--++.-+-.++..+.+.+
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg 283 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG 283 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 3444445555555544332222 23456677777776 468999999999987753222221122333331111
Q ss_pred ---cC--cchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q 009359 212 ---QD--DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV 286 (536)
Q Consensus 212 ---~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 286 (536)
.| .+..+-+...+.+...+- + ++-...++.+..+..++..+...+-. .+|.++
T Consensus 284 ~~s~dq~~d~df~e~vskLitg~gv----e-----l~~i~s~lnseld~~~kqn~l~~ll~-------------~vpyll 341 (980)
T KOG2021|consen 284 YHSADQMDDLDFWESVSKLITGFGV----E-----LTIIISQLNSELDTLYKQNVLSILLE-------------IVPYLL 341 (980)
T ss_pred hhccccccCchHHHHHHHHHhhcce----e-----eehhHhhhhhccCHHHHHHHHHHHHH-------------HHHHHH
Confidence 12 233343333333333221 1 12222223233455555544333322 456666
Q ss_pred HhcCCCcHHHHHHHHHhHHHHHhhcChH--------HHHHhhhH-HHHHhcc------CCC----------HHHHHHHHH
Q 009359 287 RLLRDNEAEVRIAAAGKVTKICRILNPE--------LAIQHILP-CVKELSS------DSS----------QHVRSALAT 341 (536)
Q Consensus 287 ~ll~d~~~~vr~~a~~~l~~~~~~~~~~--------~~~~~i~~-~l~~l~~------d~~----------~~vr~~a~~ 341 (536)
+.+.+...++-......+......+... ...+.++. .+.++.- |.+ ..+|...-.
T Consensus 342 q~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~ 421 (980)
T KOG2021|consen 342 QFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKN 421 (980)
T ss_pred HHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHH
Confidence 6666665555555444444433332111 11122221 1222221 111 235554433
Q ss_pred HHHHhhhhhCHHHHHHhHHHHHHHhh---CCCCHHHHHHHHHhhHHHHhhhchhHH------------HhhHHHHHHH--
Q 009359 342 VIMGMAPILGKDATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLL------------SQSLLPAIVE-- 404 (536)
Q Consensus 342 ~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~i~~~l~~-- 404 (536)
....++ .+.++.+...+...+-..+ +.+++..-+.|+.-+..++.++..+.. ....++.+.+
T Consensus 422 fqdti~-~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsq 500 (980)
T KOG2021|consen 422 FQDTIV-VIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQ 500 (980)
T ss_pred HHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcc
Confidence 333332 2344444444444444444 345667778888888888776643311 1122222221
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH------HhcCcchHHHHHHHHHHHHHHHHhChhh--hhhch
Q 009359 405 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ------WLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHI 476 (536)
Q Consensus 405 ~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~------~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i 476 (536)
....++..+....++.+.+-.+.+.. .+.-+|.++. .+++++..||..|.+....+.+.+.... ..+.+
T Consensus 501 v~~h~h~lVqLlfmE~ivRY~kff~~---esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~i 577 (980)
T KOG2021|consen 501 VLAHDHELVQLLFMELIVRYNKFFST---ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEI 577 (980)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhc---chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234555555555555554333322 2233444443 4567889999999999998888765542 23566
Q ss_pred hHHHHhhc
Q 009359 477 VPQVLEMI 484 (536)
Q Consensus 477 ~~~l~~~~ 484 (536)
+..+.+++
T Consensus 578 ln~iqdlL 585 (980)
T KOG2021|consen 578 LNKIQDLL 585 (980)
T ss_pred HHHHHHHH
Confidence 66666655
No 211
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.28 E-value=0.65 Score=42.72 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=24.7
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH
Q 009359 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (536)
Q Consensus 280 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (536)
-++|.++.++.|.++++|..++..+..+.+..+..
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~ 153 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA 153 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh
Confidence 46777777777777777777777777777655444
No 212
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.19 E-value=0.58 Score=45.54 Aligned_cols=140 Identities=12% Similarity=0.190 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcc--------hHHHHHHHHhHHHhhccc-
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ--------DSVRLLAVEGCGALGKLL- 233 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~--------~~vr~~a~~~l~~l~~~~- 233 (536)
-.+..+.+.+-+.++..|..|++.|.. +.-.+.++|++..++.+.- -..-...++....+.+.-
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 344555666666888899999988876 2224668888887776531 111122222222222211
Q ss_pred -CchhhhhhhHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCC--cHHHHH
Q 009359 234 -EPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDN--EAEVRI 298 (536)
Q Consensus 234 -~~~~~~~~l~~~l~~~~----------~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~--~~~vr~ 298 (536)
--+.+...++|.+..++ .|..|.+|..++..+..++..++... ....+...+.+.+.|+ .+....
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 11456677777776543 35689999999999999998887543 2346777777777765 455677
Q ss_pred HHHHhHHHHHh
Q 009359 299 AAAGKVTKICR 309 (536)
Q Consensus 299 ~a~~~l~~~~~ 309 (536)
.++.++..++.
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 77777777754
No 213
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=95.14 E-value=9.7 Score=45.29 Aligned_cols=246 Identities=18% Similarity=0.159 Sum_probs=134.3
Q ss_pred HHHhcChhHHHHHHHhhhHHHHHHhhCh------H--hhhhcccccccc--ccCCchHHHHHHHHHHh-chhcccCCccc
Q 009359 15 IDELKNDDIQLRLNSIRRLSTIARALGE------E--RTRKELIPFLSE--NNDDDDEVLLAMAEELG-VFIPYVGGLEY 83 (536)
Q Consensus 15 ~~~l~s~~~~~R~~a~~~l~~~~~~~~~------~--~~~~~l~~~l~~--~~d~~~~vr~~a~~~l~-~l~~~~~~~~~ 83 (536)
-..+..+|+..|..|...+..+...... . +..+.++..+.. ..|.++.+|.+....+. .+.....
T Consensus 487 ~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~la---- 562 (2341)
T KOG0891|consen 487 DSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLA---- 562 (2341)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhc----
Confidence 3456678888999997777665432211 1 113333344333 55677777776666665 1111111
Q ss_pred hhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHH--------hcCcccchhhHHHhhhhhhccC
Q 009359 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL--------AAGEWFTARVSSCGLFHVAYPS 155 (536)
Q Consensus 84 ~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l--------~~~~~~~~r~~a~~~l~~~~~~ 155 (536)
.+..+..+.....++.-.++..+...++.++..-+ .+++|.+... ..+....+.......+..+...
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~ 637 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS 637 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH
Confidence 12222334444467777788888888777666433 1233333221 1111111111111111111111
Q ss_pred CC---hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcc-hHHHHHHHHhHHHh
Q 009359 156 AP---EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGAL 229 (536)
Q Consensus 156 ~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l 229 (536)
.. ..+...++..+...+.|++..+-..+..+++.++...+. ..+.+.+++.+.+.+.|.. ..-|..+.++++.+
T Consensus 638 ~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 638 SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 11 113334445566667788889999999999999998874 3344577777777777654 45677788888887
Q ss_pred hcccCc----hhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHH
Q 009359 230 GKLLEP----QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELC 269 (536)
Q Consensus 230 ~~~~~~----~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~ 269 (536)
....+- ....+.++..+....+. -...+|.++.+.++..+
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 764332 22234455555443333 35568888888887544
No 214
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.13 E-value=11 Score=45.86 Aligned_cols=301 Identities=15% Similarity=0.107 Sum_probs=156.1
Q ss_pred ccchHHHhhhcCcchHHHHHHHHHHHHHHhhcCh----------hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccC
Q 009359 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----------QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS 155 (536)
Q Consensus 86 ~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~----------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~ 155 (536)
.+++.|..-+...+..++..+..++..+...... -.+..++++.+.+++.++.|..|..++.-|..++..
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 4445555555677888999998888887665421 223456777888889999889999998888888888
Q ss_pred CChH----HHHHHHHHHHHhcCCCChHHHH----HHHHHHHHHHHHHhh--------hhhHHHHHHHHHHhhcCcchHHH
Q 009359 156 APEA----LKTELRTIYRQLCQDDMPMVRR----SAATNLGKFAATVEA--------AHLKSEIMSIFEELTQDDQDSVR 219 (536)
Q Consensus 156 ~~~~----~~~~l~~~l~~ll~d~~~~vr~----~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~~l~d~~~~vr 219 (536)
.+.. ....++..+...+.|...++-. .+-..+..+....-. ......++..+..-+.+++..||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 7753 3334444444445443322222 222222222221111 12234455556666778888999
Q ss_pred HHHHHhHHHhhcccCchhhhhhhHHHHHHhc---------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 009359 220 LLAVEGCGALGKLLEPQDCVAHILPVIVNFS---------QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR 290 (536)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~---------~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~ 290 (536)
..+.+.|..+++..+.+ ...++..+.+.+ ....-.+......++... -..+++.+.
T Consensus 1144 ~~~~~~L~~i~~~s~~~--v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC-~~l~p~~f~------------ 1208 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKS--VVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFC-LSLGPCLFD------------ 1208 (3550)
T ss_pred HHHHHHHHHHHHHcCCc--HHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHH-HHcCCcccC------------
Confidence 99999999998877542 222333333322 222222222222222221 223333221
Q ss_pred CCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH-----HHHHHhHHHHHHH
Q 009359 291 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-----DATIEQLLPIFLS 365 (536)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~ 365 (536)
. +.+.+. -...+..++.....+.+ . +.+....-.....-..|.++.+.+......... ..+.+.++.++.+
T Consensus 1209 ~-~~~l~~-l~~~~~~La~~~~~~~~-~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk 1284 (3550)
T KOG0889|consen 1209 F-TEELYR-LKRFLIALADAEEDELA-T-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFK 1284 (3550)
T ss_pred c-hHHHHH-HHHHHHHhhhhhhhhhh-h-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHH
Confidence 1 111111 00011111111001111 0 111111111111234567777766654332221 2345677888888
Q ss_pred hhCCCCHHHHHHHHHhhHHHHhh---hchhHHHhhHHHHHHHh
Q 009359 366 LLKDEFPDVRLNIISKLDQVNQV---IGIDLLSQSLLPAIVEL 405 (536)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~ 405 (536)
.+..+.+++-+.+..++..+... ++.+.+....-|.+..+
T Consensus 1285 ~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1285 SLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 88888899988888888777543 45555544444555444
No 215
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.13 E-value=3.6 Score=40.33 Aligned_cols=214 Identities=12% Similarity=0.190 Sum_probs=107.4
Q ss_pred chHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCc------cccchHHHH
Q 009359 215 QDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP------TRSDVVPAY 285 (536)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~~~------~~~~l~~~l 285 (536)
|+.+-+..++.+..+.+.+.+ ....+.+...+....+++ ++.--+...++++.+.+...... +.+.++|.+
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f 122 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF 122 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 333433444444443333322 223344444444455554 55555666677777766544321 234578888
Q ss_pred HHhcCCCcHHHHHHHHHhHHHHHhhcChHHH---HHhhhHHHHHhccCCCHHHH---HHHHHHHHHhhhhhCH----HHH
Q 009359 286 VRLLRDNEAEVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVR---SALATVIMGMAPILGK----DAT 355 (536)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~i~~~l~~l~~d~~~~vr---~~a~~~l~~l~~~~~~----~~~ 355 (536)
...|..+..+.--.+.+-++.+.+....... ...++|.+ +...-|..| -+.++.+..+.+.-+. ...
T Consensus 123 ~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~L---l~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~ 199 (435)
T PF03378_consen 123 QEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPL---LSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQ 199 (435)
T ss_dssp HHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHH---TSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH---cCcchhccCCCcCcHHHHHHHHHHhCchhhcchhh
Confidence 8887766555556666777777766542222 23333433 333334321 2334444444332222 122
Q ss_pred HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHH---hhHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhhchh
Q 009359 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVG 431 (536)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~-~~~~~~~R~~a~~~l~~l~~~~~~~ 431 (536)
...++-++.+++.....+ ..++.-+..+...+..+.+. ..++..+.+.+ +++....+...+..++.++...|++
T Consensus 200 l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 200 LEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 356777777888776544 45777888888877765442 33344333333 4566777777777777777666665
Q ss_pred hH
Q 009359 432 FF 433 (536)
Q Consensus 432 ~~ 433 (536)
.+
T Consensus 278 ~l 279 (435)
T PF03378_consen 278 FL 279 (435)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 216
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.10 E-value=0.38 Score=44.26 Aligned_cols=72 Identities=18% Similarity=0.019 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh---h-----HHHHHHHHHHhhc--------CcchHHHHHHH
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH---L-----KSEIMSIFEELTQ--------DDQDSVRLLAV 223 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~---~-----~~~l~~~l~~~l~--------d~~~~vr~~a~ 223 (536)
+..-++|.++.+++|.++.+|..++.+|..+....+... . .+.+.+.+...+. ++...+-..+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 667788999999999999999999999999988765433 1 2333344444443 44455556666
Q ss_pred HhHHHhhc
Q 009359 224 EGCGALGK 231 (536)
Q Consensus 224 ~~l~~l~~ 231 (536)
.++-.+..
T Consensus 196 ~~L~~L~~ 203 (282)
T PF10521_consen 196 PALLSLLK 203 (282)
T ss_pred HHHHHHHH
Confidence 66666644
No 217
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.10 E-value=0.18 Score=41.65 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=83.1
Q ss_pred HHhhhc-CcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH-----HHHHH
Q 009359 91 LETLCT-VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-----LKTEL 164 (536)
Q Consensus 91 l~~l~~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l 164 (536)
+..+.. ..++.+|..+.-++.++. ...++.+.+.+...+.....+........+...+..+++..++- ..+.+
T Consensus 9 L~~L~~~~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~ 87 (157)
T PF11701_consen 9 LTSLDMLRQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGF 87 (157)
T ss_dssp HHHHHCTTTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTH
T ss_pred HHHhcccCCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhH
Confidence 344443 456778999988888886 33345566667777777776655556666777777777665442 23456
Q ss_pred HHHHHHhcC--CCChHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhhc-CcchH-HHHHHHHhHH
Q 009359 165 RTIYRQLCQ--DDMPMVRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQ-DDQDS-VRLLAVEGCG 227 (536)
Q Consensus 165 ~~~l~~ll~--d~~~~vr~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~~l~-d~~~~-vr~~a~~~l~ 227 (536)
++.+..++. .++..+...+++.+..-+..-. ...+...-++.+.++.+ ++++. +|..|+-+|.
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 666666666 6677777888777776543211 13445566677777774 44444 6666655553
No 218
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.10 E-value=0.59 Score=37.69 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=72.5
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHh
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLE 482 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (536)
.+++|..-...+..+.. ...+ ....+..+.+.+.++++.|...|+..+..+.+++|..+.. ..++..|..
T Consensus 18 ~~~dw~~ileicD~In~--~~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 18 GEPDLASILEICDMIRS--KDVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred CccCHHHHHHHHHHHhC--CCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 45677765555555532 1112 3345666778888999999999999999999999986533 677888888
Q ss_pred hcc-CCChHHHHHHHHHHHHHhhhhChH
Q 009359 483 MIN-NPHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 483 ~~~-d~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
++. ..+..|+..++..+..++..++.+
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 776 468889999999999999887754
No 219
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.09 E-value=1.3 Score=36.86 Aligned_cols=77 Identities=17% Similarity=0.059 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHhhcCcc-hHHHHHHHHhHHHhhccc
Q 009359 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL---KSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLL 233 (536)
Q Consensus 158 ~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~ 233 (536)
......+...+..+++++++.-|..++..++..++..+.+.+ ....+..+.+.++.++ ..++..++.++..+....
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 446677888899999999999999999999999988765443 2345555666666544 467888888888877644
Q ss_pred C
Q 009359 234 E 234 (536)
Q Consensus 234 ~ 234 (536)
.
T Consensus 100 ~ 100 (165)
T PF08167_consen 100 R 100 (165)
T ss_pred c
Confidence 3
No 220
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.08 E-value=11 Score=45.75 Aligned_cols=319 Identities=16% Similarity=0.183 Sum_probs=168.8
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcc----cCc------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009359 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKL----LEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (536)
Q Consensus 201 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~~------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~ 270 (536)
..+++.+...+..++.+++..+..++..+-.. ++. -.....+++.+.+++.++.|.-|...+..++-+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 45788888888889999999999888776543 221 13456688888889999999999988888877776
Q ss_pred HhCCCcc---ccchHHHHHHhcCCCcHHHHH--------HHHHhHHHHHhhcChH----HHHHhhhHHHHHhccCCCHHH
Q 009359 271 AVGPEPT---RSDVVPAYVRLLRDNEAEVRI--------AAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHV 335 (536)
Q Consensus 271 ~~~~~~~---~~~l~~~l~~ll~d~~~~vr~--------~a~~~l~~~~~~~~~~----~~~~~i~~~l~~l~~d~~~~v 335 (536)
.+..... ...++..+...++|...++-. ....-+..+...+..+ .....++..+..-+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 6552211 224555555666665444322 2222222222222111 122333344444456788999
Q ss_pred HHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhh---------CCCCHHHHHHHHHhhHHHHh--hhchhHH-----H---h
Q 009359 336 RSALATVIMGMAPILGKDATIEQLLPIFLSLL---------KDEFPDVRLNIISKLDQVNQ--VIGIDLL-----S---Q 396 (536)
Q Consensus 336 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---------~d~~~~vr~~a~~~l~~l~~--~~~~~~~-----~---~ 396 (536)
|..+.+.+..++...|.+. .+++..+.+.+ ..-...+ .+..+..+.. .++++.+ . .
T Consensus 1143 R~~~~~~L~~i~~~s~~~v--~~L~~p~K~~ll~p~f~k~lr~~p~~~---qig~vd~~~fC~~l~p~~f~~~~~l~~l~ 1217 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSV--VKLLEPFKDVLLSPIFKKPLRALPFTI---QIGHLDAITFCLSLGPCLFDFTEELYRLK 1217 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhccccccccccCCHHH---HhhhHHHHHHHHHcCCcccCchHHHHHHH
Confidence 9999999999887665431 22222222222 2222222 2222222221 2222110 0 0
Q ss_pred hHHHH-----------HHHhhcCC----ChHHHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHHHhcCcchHHHHHH
Q 009359 397 SLLPA-----------IVELAEDR----HWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDKVYSIRDAA 456 (536)
Q Consensus 397 ~i~~~-----------l~~~~~~~----~~~~R~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~Vr~~a 456 (536)
..... +.+....+ .-..|.++++.+........- ......++.++.+.+..+.+++-..+
T Consensus 1218 ~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~ 1297 (3550)
T KOG0889|consen 1218 RFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVA 1297 (3550)
T ss_pred HHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHH
Confidence 00111 11111111 234577888877665443321 12346677778888888888898888
Q ss_pred HHHHHHHHHH---hChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChH---HHHHhHHHHHHhhcCCc
Q 009359 457 ANNVKRLAEE---FGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDS 526 (536)
Q Consensus 457 ~~~l~~l~~~---~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~ 526 (536)
..++...... ++.+..+...-|.++.+-...+ .-...+..++.+..-+..- .+...++..+..+++|.
T Consensus 1298 ~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~--lsv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~~ 1371 (3550)
T KOG0889|consen 1298 LEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNN--LSVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKKWLEDE 1371 (3550)
T ss_pred HHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 8888766543 3333333333455544332222 2334444444444433322 23344455555555443
No 221
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=95.08 E-value=1.3 Score=42.09 Aligned_cols=48 Identities=10% Similarity=0.051 Sum_probs=28.1
Q ss_pred hhHHHHhhccCC--ChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcC
Q 009359 476 IVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK 524 (536)
Q Consensus 476 i~~~l~~~~~d~--~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 524 (536)
+-..+..++.++ .+.+|..+...+..+....+.. +...++..+-+++.
T Consensus 205 ~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 205 WAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 444555555565 7778888888888776655543 34444444444443
No 222
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=95.06 E-value=2.5 Score=43.31 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHhChh--------hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009359 435 DKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPD--------WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 435 ~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~--------~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
+.++...+.++. ..+..+-++++.+|..+.-..+.. +.++..+|.+.++++.++..+-..+..++.+++..
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 445555555554 445678888888888776543321 23578899999999999999999999999999887
Q ss_pred hChH-HHHHhHHHHHHhhcCCccc
Q 009359 506 MGSE-ITCSQLLPVVINASKDSES 528 (536)
Q Consensus 506 ~~~~-~~~~~~~~~l~~~l~d~~~ 528 (536)
.... .+..+.+|.|.+++-+..+
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGP 620 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCC
Confidence 6544 4677899999999999877
No 223
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=95.05 E-value=2.2 Score=37.39 Aligned_cols=134 Identities=17% Similarity=0.188 Sum_probs=92.5
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCC-CCHHHHHHH-HHHHHHHHHHhCCCccc
Q 009359 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTR 278 (536)
Q Consensus 201 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~-~~~l~~l~~~~~~~~~~ 278 (536)
+.....+..+..+...+.|..|+..+.......+ ...++.+...+.+ ++|.+-... ...++.+... .
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~ 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------H 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------H
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------h
Confidence 4455666677788888888888888866544322 2245566665555 578877766 4455665432 1
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhh
Q 009359 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (536)
Q Consensus 279 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 349 (536)
+.+.+.+.+..+++++-+|.+++..+...... ...+.++..+.....|++..||.++..+|..++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 56788888999999999999888776555443 23366777777788899999999999999988765
No 224
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.04 E-value=0.57 Score=44.32 Aligned_cols=132 Identities=18% Similarity=0.267 Sum_probs=79.9
Q ss_pred HhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCC-------ChHHHHHHHHHHHHHHhh--hchhhHHH
Q 009359 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDD 435 (536)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~R~~a~~~l~~l~~~--~~~~~~~~ 435 (536)
..+.+.+...|..|+..|.. .-| .+.++|.+..+..+. +...-...+.++..+... +.-+.+..
T Consensus 185 ~a~~~~~~~~r~~aL~sL~t---D~g----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh 257 (343)
T cd08050 185 EALVGSNEEKRREALQSLRT---DPG----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH 257 (343)
T ss_pred HHHhCCCHHHHHHHHHHhcc---CCC----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH
Confidence 33444566677776655433 112 256677776665432 333333344444444332 22334556
Q ss_pred HHHHHHHHHh----------cCcchHHHHHHHHHHHHHHHHhChh--hhhhchhHHHHhhccCCC--hHHHHHHHHHHHH
Q 009359 436 KLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH--YLYRMTILQAISL 501 (536)
Q Consensus 436 ~l~~~l~~~l----------~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~--~~~r~~~~~~l~~ 501 (536)
.++|.++.++ .+....+|..|+..++.++..++.. ....++...+.+.+.|+. ......|+.++..
T Consensus 258 ~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 258 QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 6788877765 3456789999999999999998865 234666666666677663 3346777777776
Q ss_pred Hh
Q 009359 502 LA 503 (536)
Q Consensus 502 l~ 503 (536)
++
T Consensus 338 lG 339 (343)
T cd08050 338 LG 339 (343)
T ss_pred hC
Confidence 65
No 225
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=2.7 Score=37.98 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=41.1
Q ss_pred cCcchHHHHHHHHHHHHHHHH-hChhhhh-hchhHHHHhhcc-CCChHHHHHHHHHHHHHhh
Q 009359 446 KDKVYSIRDAAANNVKRLAEE-FGPDWAM-QHIVPQVLEMIN-NPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~~~-~~~~~~~-~~i~~~l~~~~~-d~~~~~r~~~~~~l~~l~~ 504 (536)
.|+++.||...+++|-.++.. -|.+... ..+.|.+..+.. .++.++|..+.+...-+..
T Consensus 254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 378899999999999888654 4544333 556666666543 4678888887777766654
No 226
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.88 E-value=1 Score=36.07 Aligned_cols=97 Identities=9% Similarity=0.102 Sum_probs=71.8
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHH
Q 009359 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVL 481 (536)
Q Consensus 406 ~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~ 481 (536)
+.+++|..-...+..+.. ..-| ....+..+.+.+.++++.|...|+..+..+.+++|..+.. ..++..+.
T Consensus 14 l~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 14 NREEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred CCCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence 345678766666665532 1112 2345566788889999999999999999999999987533 56777787
Q ss_pred hhccC------CChHHHHHHHHHHHHHhhhhCh
Q 009359 482 EMINN------PHYLYRMTILQAISLLAPVMGS 508 (536)
Q Consensus 482 ~~~~d------~~~~~r~~~~~~l~~l~~~~~~ 508 (536)
+++.. .+..|+..++..+..++..++.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 77753 5789999999999999988764
No 227
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.62 E-value=4 Score=38.30 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=73.2
Q ss_pred HHhhCCCCHHHHHHHHHhhHHHHhhhchhHHH--hhHHHHHHHhhcC----CChHHHHHHHHHHHHHHhhh--chhhHHH
Q 009359 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQL--GVGFFDD 435 (536)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~~----~~~~~R~~a~~~l~~l~~~~--~~~~~~~ 435 (536)
++.+..+++.++..++..+..+...-+..... +.+++.+...+.+ ++......++.++..+...- ...++..
T Consensus 111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~ 190 (312)
T PF03224_consen 111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS 190 (312)
T ss_dssp HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence 33555556666666666666665433221110 2333444443332 33344566666666665422 2223345
Q ss_pred HHHHHHHHHh-----cCcchHHHHHHHHHHHHHHHHhChhh----hhhchhHHHHhhccC-CChHHHHHHHHHHHHHhhh
Q 009359 436 KLGALCMQWL-----KDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 436 ~l~~~l~~~l-----~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d-~~~~~r~~~~~~l~~l~~~ 505 (536)
..++.+...+ .+....++...--++.-+.-.+.++. ....++|.+.+..++ ....+---++.++.++...
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 5556666666 34444444444444444443343332 224578888877654 3444555567777777766
Q ss_pred hChHH----HHHhHHHHHHhhcC
Q 009359 506 MGSEI----TCSQLLPVVINASK 524 (536)
Q Consensus 506 ~~~~~----~~~~~~~~l~~~l~ 524 (536)
-..+. +...+.|.+..+..
T Consensus 271 ~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 271 APKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp SSTTHHHHHHHH-HHHHHHHHHS
T ss_pred cHHHHHHHHHHccHHHHHHHHhc
Confidence 55322 23344555544443
No 228
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.59 E-value=1.8 Score=36.02 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=80.0
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHH---HHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHhChh-
Q 009359 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPD- 470 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~- 470 (536)
+.+...+..++++++..-|-.++..+..++...+.+.+. ...+..+++.++.++ ..++..++.++..+....+..
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 566777888888888888888888888888887666653 445666777776544 468889999999998876532
Q ss_pred -hhh-------hchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHH
Q 009359 471 -WAM-------QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 510 (536)
Q Consensus 471 -~~~-------~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~ 510 (536)
... ..+++.+.++.++ ......++.++..+....+..+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc
Confidence 111 2344444555554 5677888999999888766543
No 229
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.50 E-value=1.3 Score=35.83 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccC
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~ 234 (536)
.+.+..+..-+++.++.|...|+..|..+.+.+|.. .....++..+.+++++ .+..|+...++.+...+..+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 344555666667788888888998888888887763 2334566667677766 566788888887777776554
No 230
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=7 Score=40.32 Aligned_cols=211 Identities=14% Similarity=0.137 Sum_probs=125.8
Q ss_pred ccccccccccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCc-chHHHHHHHHHHHHHHhhcC--hhhHHh
Q 009359 48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMR--EQDVVE 124 (536)
Q Consensus 48 ~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~-~~~vr~~a~~~l~~~~~~~~--~~~~~~ 124 (536)
.++|=+..-.+..--.|+..+-.+|..+..--..+....+-..+.++++|. +..||-.+++++....+.+. ++.+.+
T Consensus 488 ~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp 567 (978)
T KOG1993|consen 488 ALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLP 567 (978)
T ss_pred hhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhh
Confidence 444444422223335678888888887664333333444444577788887 77889999999999988653 343333
Q ss_pred h---HHHHHHHHhcC-cccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHh
Q 009359 125 H---FIPLVKRLAAG-EWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQ--DDMPMVRRSAATNLGKFAATVE 195 (536)
Q Consensus 125 ~---l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~--d~~~~vr~~a~~~l~~~~~~~~ 195 (536)
+ +.-.+.++.+. .....|......++.+..+.++. +...+...+..+-+ .+.+-.|.+.+.++.++...+|
T Consensus 568 ~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg 647 (978)
T KOG1993|consen 568 YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALG 647 (978)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhc
Confidence 3 33334444443 24456777777777777666553 33333333333322 2557889999999999999888
Q ss_pred h--hhhHHHHHHHHHHhhcCcch---HHHHHHHHhHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHH
Q 009359 196 A--AHLKSEIMSIFEELTQDDQD---SVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVR 258 (536)
Q Consensus 196 ~--~~~~~~l~~~l~~~l~d~~~---~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR 258 (536)
. ....+.++|++....+-+++ ..-+-+++.++.+....+. ..-.-.++|++...++-.....|
T Consensus 648 ~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~ 716 (978)
T KOG1993|consen 648 AQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP 716 (978)
T ss_pred cCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH
Confidence 6 35567788877655443333 3456677777777665543 11233466666665554444444
No 231
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=7.9 Score=43.20 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=64.5
Q ss_pred HHHHHHHhhHHHHhhhchhHHHh-------h--HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhh---HHHHHHHHH
Q 009359 374 VRLNIISKLDQVNQVIGIDLLSQ-------S--LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALC 441 (536)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~-------~--i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~l~~~l 441 (536)
|-..+..++..+....|.+.-.. . --..+..+++++.+.+|.+..+.+..+...+.... ....+.|.+
T Consensus 202 vi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~ 281 (1312)
T KOG0803|consen 202 VISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVL 281 (1312)
T ss_pred HHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHH
Confidence 44455566666665555432111 1 12466778888999999999999888877655431 234566666
Q ss_pred HHHhcCcchHHHHHHHHHHHHHHHHhChhhh------hhchhHHHHhhcc
Q 009359 442 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWA------MQHIVPQVLEMIN 485 (536)
Q Consensus 442 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~------~~~i~~~l~~~~~ 485 (536)
.....+.+ -|-....+++.-....+.+++. ...++|.+.++++
T Consensus 282 ~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 282 LGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred Hccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 66665555 4444455555444444444432 2456666666555
No 232
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=8.4 Score=42.98 Aligned_cols=175 Identities=18% Similarity=0.104 Sum_probs=90.9
Q ss_pred CCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHH----HHHhccCCCHHHHHHHHHHHHHhhhhhCHH--HHHHhHHHHHH
Q 009359 291 DNEAEVRIAAAGKVTKICRILNPELAIQHILPC----VKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFL 364 (536)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~----l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~ 364 (536)
..++..|.-|++-+..+......+.... ++|. +.+++.|.+..||.+.-+.+..+...+++. .+.+.++|...
T Consensus 52 KkD~~TK~KaL~eL~eli~~~~~e~~~~-il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl 130 (1312)
T KOG0803|consen 52 KRDETTKIKALQELSELIDTSDTEELKG-ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWL 130 (1312)
T ss_pred ccChHHHHHHHHhHHHhcccccchHHhh-hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhh
Confidence 3344555555555555554433332211 2222 234555666666666666666665555433 23455555555
Q ss_pred HhhCCCCHHHHHHHHHhhHHHHhhhchhHH-------HhhHHHHHHHh-------------------hcCCChHHHHHHH
Q 009359 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLL-------SQSLLPAIVEL-------------------AEDRHWRVRLAII 418 (536)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~i~~~l~~~-------------------~~~~~~~~R~~a~ 418 (536)
....|....|-.+|...+..... ++.. ...+.+...+. ++.+..++-..++
T Consensus 131 ~~~~d~~~~vs~aa~~sf~~~f~---~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssL 207 (1312)
T KOG0803|consen 131 GGQFDLDYPVSEAAKASFKDGFA---EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSL 207 (1312)
T ss_pred heecccchHHHHHHHHHHHhhcC---hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHH
Confidence 55555555555544444433321 1110 11122222111 1123345555666
Q ss_pred HHHHHHHhhhchhhHH----H---H--HHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh
Q 009359 419 EYIPLLASQLGVGFFD----D---K--LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 419 ~~l~~l~~~~~~~~~~----~---~--l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
.++..+....|...-. + . --..+.+++.++.+.||.++.+.+..+++.+..
T Consensus 208 l~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 208 LLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred HHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 6666666555443211 1 1 123477889999999999999999988877654
No 233
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=8.5 Score=40.23 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhhcCcc-----hHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcC-----CCCHHHHHHHHHHHHHHH
Q 009359 200 KSEIMSIFEELTQDDQ-----DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-----DKSWRVRYMVANQLYELC 269 (536)
Q Consensus 200 ~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-----d~~~~vR~~~~~~l~~l~ 269 (536)
.+.+...+-+.+.|.+ +..-++++..+..+++..+... ..-+|.+.+.+. -.++..-..+...+|.++
T Consensus 460 l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s 537 (982)
T KOG2022|consen 460 LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLS 537 (982)
T ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccccccCChhHHHHHHHHHHHHH
Confidence 3445555556666555 6677888889999998887642 233454444322 236777778889999999
Q ss_pred HHhCCCc-cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH--HHHHhhhHHHHHhcc--CCCHHHHHHHHHHHH
Q 009359 270 EAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSS--DSSQHVRSALATVIM 344 (536)
Q Consensus 270 ~~~~~~~-~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~i~~~l~~l~~--d~~~~vr~~a~~~l~ 344 (536)
..+++.. +.+..+|.+.+.+..+... ..+..++..+|+....+ .+...++......+. ......|..+.+.+|
T Consensus 538 ~~l~e~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIG 615 (982)
T KOG2022|consen 538 NWLGEHPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIG 615 (982)
T ss_pred HHHhcCCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 9988764 4567889999988754433 44566688888765432 223344444333332 344678899999999
Q ss_pred HhhhhhCHHHHHHhHHH
Q 009359 345 GMAPILGKDATIEQLLP 361 (536)
Q Consensus 345 ~l~~~~~~~~~~~~l~~ 361 (536)
.+.+...++....+++.
T Consensus 616 yvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 616 YVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HHHHhccHHhHHHHHHH
Confidence 99888776665544443
No 234
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.10 E-value=5.7 Score=38.06 Aligned_cols=214 Identities=14% Similarity=0.045 Sum_probs=118.1
Q ss_pred CcchHHHHHHHHHHHHHHhhcCh-hhHHhh-HHHHH-HHHhcCc-ccchhhHHHhhhhhhccC--CChHHHHHHHHHHHH
Q 009359 97 VEETCVRDKAVESLCRIGSQMRE-QDVVEH-FIPLV-KRLAAGE-WFTARVSSCGLFHVAYPS--APEALKTELRTIYRQ 170 (536)
Q Consensus 97 ~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~-l~~~l-~~l~~~~-~~~~r~~a~~~l~~~~~~--~~~~~~~~l~~~l~~ 170 (536)
+++..||..+.+.+..+...... ..+... +--++ ..+..+. +...|..|..++..+.+. ...+.-..+..-+..
T Consensus 36 ~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralva 115 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVA 115 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHH
Confidence 33488888888888887764322 111111 11122 2233332 455788888887777655 222344556667777
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc------hhhhhhhHH
Q 009359 171 LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------QDCVAHILP 244 (536)
Q Consensus 171 ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~ 244 (536)
+.++++...|..|.+.+.+++-..+.-.....-+..+.+.+.|...++-...+.++-.+.+.-.- ....+.++.
T Consensus 116 iae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~a 195 (371)
T PF14664_consen 116 IAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLA 195 (371)
T ss_pred HHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHH
Confidence 77888889999999999998866544222222334455555554334444444444444432211 112233444
Q ss_pred HHHHh----cCCCCH-HHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhh
Q 009359 245 VIVNF----SQDKSW-RVRYMVANQLYELCEAVGPEPT----RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (536)
Q Consensus 245 ~l~~~----~~d~~~-~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 310 (536)
.+... .+++.. ..-..+..++..+.+....-.. ...-+..++..+.-+.+++|...+..+-.+...
T Consensus 196 pftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 196 PFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 44433 222221 2333455566665554332110 114567777888888899999988887777653
No 235
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=94.00 E-value=2 Score=34.67 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHhhcCcc--hH--HHHHHHHhHHHhhc
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQ--DS--VRLLAVEGCGALGK 231 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~d~~--~~--vr~~a~~~l~~l~~ 231 (536)
...+....+.+-+...++.+...|+..|..+.+..|.... ...++..+.+++.+.. +. ||..+++.+...+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3455666777778889999999999999999998876332 3446667777665432 22 89999999998888
Q ss_pred ccCc
Q 009359 232 LLEP 235 (536)
Q Consensus 232 ~~~~ 235 (536)
.+..
T Consensus 119 ~f~~ 122 (140)
T PF00790_consen 119 AFKS 122 (140)
T ss_dssp HTTT
T ss_pred HHCC
Confidence 7744
No 236
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.96 E-value=1.6 Score=35.47 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHhChhhhh-hchhHHHHhhccCCChHHHHHHHHHH
Q 009359 450 YSIRDAAANNVKRLAEEFGPDWAM-QHIVPQVLEMINNPHYLYRMTILQAI 499 (536)
Q Consensus 450 ~~Vr~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~~~~d~~~~~r~~~~~~l 499 (536)
..+...++++++.+.......... ..+++.+.+++++++. +..|++++
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 567777777777777655544332 4577777776655544 66666553
No 237
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=9.8 Score=40.23 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=68.0
Q ss_pred HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch--hhH---HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhC
Q 009359 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (536)
Q Consensus 394 ~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--~~~---~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (536)
+...|+..-..++.+++-++|..++.++..-...+.. +.+ .....|.+...+.++++-+-..|++++.+++...|
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 3456777778889999999999999988654433321 112 23456778888899999999999999999999988
Q ss_pred hhh---hhhchhHHHHhhccC
Q 009359 469 PDW---AMQHIVPQVLEMINN 486 (536)
Q Consensus 469 ~~~---~~~~i~~~l~~~~~d 486 (536)
.-. +.+.++|.+..++.|
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 631 236788888765543
No 238
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=93.95 E-value=18 Score=43.24 Aligned_cols=253 Identities=15% Similarity=0.138 Sum_probs=138.6
Q ss_pred HHhhhcCcchHHHHHHHHHHHHHHhhcCh--------hhHHhhHHHHHHHHhc-CcccchhhHHHhhhhhhccCCChH-H
Q 009359 91 LETLCTVEETCVRDKAVESLCRIGSQMRE--------QDVVEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYPSAPEA-L 160 (536)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~~~~-~ 160 (536)
+...+...+.++|..+..++..+...... -+....++..+..+.. |.++.+|......+. ...... .
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~la 562 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLA 562 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhc
Confidence 45556677889999997777776654432 1123344444444443 446666665554433 222121 3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc----CcchHHHHHHHHhHHHhhccc--C
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQ----DDQDSVRLLAVEGCGALGKLL--E 234 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~--~ 234 (536)
.+.....+...+.|....++..+...+|.++...+ ....+.+--......+ +....+...+..-+..+.... .
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 44555666777788888889988888887776433 1112222222222222 211111111111111111100 0
Q ss_pred chhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCC-cHHHHHHHHHhHHHHHhhc
Q 009359 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRIL 311 (536)
Q Consensus 235 ~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~~ 311 (536)
-..+...++..+...+.+.+..+-.++..+++.++..-|.+. +.+.+++.+.+.+.|. +..-|.++.++++++...-
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 012344455555666777777888999999999998888433 3346777777777664 4556788899999887743
Q ss_pred Ch----HHHHHhhhHHHH-HhccCCCHHHHHHHHHHHHHhh
Q 009359 312 NP----ELAIQHILPCVK-ELSSDSSQHVRSALATVIMGMA 347 (536)
Q Consensus 312 ~~----~~~~~~i~~~l~-~l~~d~~~~vr~~a~~~l~~l~ 347 (536)
+- ....+.++..+. .+.......+|..+++.++..+
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 21 111122222222 2233445668888888888554
No 239
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=93.79 E-value=5.9 Score=37.13 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcC
Q 009359 178 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ 251 (536)
Q Consensus 178 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 251 (536)
.-++.|.+.++++.++++. ..+..++.-+.++.|.+-.||..|++.|..++.. +....+.+.+.++++
T Consensus 39 k~k~lasq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 3455677777777777653 2344555566677777778888888887777763 334555555555554
No 240
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.73 E-value=1.1 Score=38.25 Aligned_cols=71 Identities=15% Similarity=0.027 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhccc
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 233 (536)
.+..++.+.+++-+++..+|..|++.+..+.... -..-...+|.+..+..|+++.+|..|...+..+.+..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3455666777888888899999998888877632 1223457788888999999999999988888887644
No 241
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.73 E-value=6.5 Score=37.43 Aligned_cols=353 Identities=11% Similarity=0.077 Sum_probs=172.8
Q ss_pred cCCchHHHHHHHHHHhchhcccCC-c-----cchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcCh--hhH-----H
Q 009359 57 NDDDDEVLLAMAEELGVFIPYVGG-L-----EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--QDV-----V 123 (536)
Q Consensus 57 ~d~~~~vr~~a~~~l~~l~~~~~~-~-----~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~--~~~-----~ 123 (536)
...+..|+...+.|+....+..-. . ..-...+.+|++.-++++.+|-...+++++++|-.... ..+ .
T Consensus 52 ~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 344556788888888776542111 1 12244566778888888889999999999999876533 111 1
Q ss_pred hhHHHHHHHHhcCcccchhhHHHhhhhhhccCC--ChHHHHH-----HHHHHHHhc--CCCChHHHHHHHHHHHHHHHH-
Q 009359 124 EHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA--PEALKTE-----LRTIYRQLC--QDDMPMVRRSAATNLGKFAAT- 193 (536)
Q Consensus 124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~--~~~~~~~-----l~~~l~~ll--~d~~~~vr~~a~~~l~~~~~~- 193 (536)
..++..++..+..+++..-.......+.+.... +++...+ +++.+.... .-.+-..-+...-.++++.+.
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 224555655554444333332222222222221 1222222 233232222 111112222222222222221
Q ss_pred ---HhhhhhHHHHHHHHHHhhc-CcchHHHHHHHHhHHHhhcccC------chhhhhhhHHHHHHhcCCCCHHHHHHHHH
Q 009359 194 ---VEAAHLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVAN 263 (536)
Q Consensus 194 ---~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~l~~~l~~~~~d~~~~vR~~~~~ 263 (536)
+.+-.....+.-.+.+++. .-++..+....+.+...++.-. +......++..+.+.-.+.+ +.....
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~---k~d~~~ 288 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTK---KTDMLN 288 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccc---hHHHHH
Confidence 1111111111111222221 1234456666666666554211 11122233333332111111 111122
Q ss_pred HHHHHHHH-----hCCCc-----cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh------HHHHHhhhHHHHH-
Q 009359 264 QLYELCEA-----VGPEP-----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------ELAIQHILPCVKE- 326 (536)
Q Consensus 264 ~l~~l~~~-----~~~~~-----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~i~~~l~~- 326 (536)
.+...++. .|.+. ..++++..+.+.+..++......+.-+++.|++.-.. +.+.+.++..+.+
T Consensus 289 l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~ 368 (604)
T KOG4500|consen 289 LFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQE 368 (604)
T ss_pred HHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 22222211 13322 1335888888888888889999999999999874322 2334555555543
Q ss_pred hccCCCHHHHHHHHHHHHHhhhh-hCHHHHH-HhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch--hHH--HhhHHH
Q 009359 327 LSSDSSQHVRSALATVIMGMAPI-LGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLL--SQSLLP 400 (536)
Q Consensus 327 l~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~--~~~i~~ 400 (536)
--.|.+-++..+++.++..+.-- .++..+. .-+...++..++-..|.|......++.-+...... ..+ ...++.
T Consensus 369 ~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~e 448 (604)
T KOG4500|consen 369 KDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFE 448 (604)
T ss_pred cCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHH
Confidence 33477788888999999887543 2333332 33555667777777777766665555554332110 000 145667
Q ss_pred HHHHhhcCCChH
Q 009359 401 AIVELAEDRHWR 412 (536)
Q Consensus 401 ~l~~~~~~~~~~ 412 (536)
.+....+++++.
T Consensus 449 kLv~Wsks~D~a 460 (604)
T KOG4500|consen 449 KLVDWSKSPDFA 460 (604)
T ss_pred HHHHhhhCCccc
Confidence 777777777643
No 242
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=93.70 E-value=0.26 Score=36.19 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=47.4
Q ss_pred CcchHHHHHHHHHHHHHHHHhChh--hhhhchhHHHHhhccCC--ChHHHHHHHHHHHHHhhhhChHHHHHhHHHHH
Q 009359 447 DKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLPVV 519 (536)
Q Consensus 447 d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l 519 (536)
|+...+|..|+..++.++..++.. ..+.++...+.+.+.|+ ....+-.|+.++..+ |++.+...++|.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l 89 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL 89 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence 556788888888888888888753 34567777777777766 445666777777665 4455555566654
No 243
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=93.67 E-value=9.1 Score=38.88 Aligned_cols=216 Identities=20% Similarity=0.204 Sum_probs=105.7
Q ss_pred hhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccc------------hHHHhhh--cCcchHHHHHHHHHH
Q 009359 46 RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL------------PPLETLC--TVEETCVRDKAVESL 110 (536)
Q Consensus 46 ~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll------------~~l~~l~--~~~~~~vr~~a~~~l 110 (536)
.+.++.++.+ ..+.+..+|-.++.-+.++++.++-. .....+ ..++.-+ .+.++.+-..++..+
T Consensus 244 l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~-l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 244 LEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWN-LAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccc-cHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 3455666666 55667889999999888888766521 111111 1222211 123444444444333
Q ss_pred HHHHhhcChhhHHhhHHHHHHHHhcCc--------ccchhhHHHhhhhhhccC----CChHHHHHHHHHHHH-hcCCCCh
Q 009359 111 CRIGSQMREQDVVEHFIPLVKRLAAGE--------WFTARVSSCGLFHVAYPS----APEALKTELRTIYRQ-LCQDDMP 177 (536)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~l~~l~~~~--------~~~~r~~a~~~l~~~~~~----~~~~~~~~l~~~l~~-ll~d~~~ 177 (536)
+ +++..+-+...-.+.|.+.+-.+=. -..+|.+++..+=.++.. +.+.....+...+.+ .+-|++-
T Consensus 323 a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel 401 (993)
T COG5234 323 A-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPEL 401 (993)
T ss_pred H-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchh
Confidence 3 3333222222222445543322211 124566666555444332 333344555555555 7789999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhccc---Cc-hhhhhhhHHHHHHhcCCC
Q 009359 178 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL---EP-QDCVAHILPVIVNFSQDK 253 (536)
Q Consensus 178 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~-~~~~~~l~~~l~~~~~d~ 253 (536)
.+|++|..++-++.....+......++..+ +.. .|.. --++-+.+...+ ++ ..+.+..-..+.+.+.+-
T Consensus 402 ~vRr~a~Aal~E~iGR~~s~a~g~~lIslI-N~~-----sv~r-~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~ 474 (993)
T COG5234 402 NVRRAATAALFEVIGRHASIADGLSLISLI-NYV-----SVTR-ISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHW 474 (993)
T ss_pred hhhhHHHHHHHHHhccCCCcccchhhhhhc-cce-----ecch-hhhcchHHHHHhcCccccchHHHHHHHHHHhhhhcc
Confidence 999999888877665422222222232222 110 1111 112222222222 21 112222223355556666
Q ss_pred CHHHHHHHHHHHHHHHH
Q 009359 254 SWRVRYMVANQLYELCE 270 (536)
Q Consensus 254 ~~~vR~~~~~~l~~l~~ 270 (536)
++.++.....++..+.+
T Consensus 475 ~~~~k~~~~y~l~~liK 491 (993)
T COG5234 475 DVKVKQLSAYSLRQLIK 491 (993)
T ss_pred chhhhhhccccHHHHhc
Confidence 77788888888887754
No 244
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=93.59 E-value=9.2 Score=38.67 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=47.5
Q ss_pred HHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHh---hHHHHHHHHhcCcccch
Q 009359 65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE---HFIPLVKRLAAGEWFTA 141 (536)
Q Consensus 65 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~l~~~~~~~~ 141 (536)
......+..++-..+ +..++.+-..|.+-.-.++......+.+.++=+++.-+.+-... .+..+++.+..+ ..
T Consensus 246 ~~vl~~Lctfi~~~~-~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~---~~ 321 (559)
T PF14868_consen 246 QHVLVHLCTFIASLS-PSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSS---SY 321 (559)
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCc---ch
Confidence 344445555544333 33555554443333334677777888888777776544432222 233334333321 22
Q ss_pred hh-HHHhhhhhhccCCChHHHHHHHHHH
Q 009359 142 RV-SSCGLFHVAYPSAPEALKTELRTIY 168 (536)
Q Consensus 142 r~-~a~~~l~~~~~~~~~~~~~~l~~~l 168 (536)
|. .-..++..+...+.++....++..+
T Consensus 322 ~~~~L~~LL~Rl~~~m~~~~q~~~v~~f 349 (559)
T PF14868_consen 322 QLINLSILLRRLFFLMAPDHQSEFVQDF 349 (559)
T ss_pred hHhhHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 22 2333455555555555444444433
No 245
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=1.4 Score=43.99 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=67.2
Q ss_pred HHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 009359 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (536)
Q Consensus 203 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 282 (536)
-+..+.+++...++.++..|+-.++-......++ .+-.+..+...+.+++..+|.+++-.|+-... |.. .+++.
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglaya--Gsq--~e~V~ 489 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAYA--GSQ--REEVL 489 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhhc--CCc--hHHHH
Confidence 4566667777777778887777766554433322 34466667777778888889888777765432 321 23444
Q ss_pred HHHHHhcCCCcHH--HHHHHHHhHHHHHhhcChHHHHHhhhHHHH
Q 009359 283 PAYVRLLRDNEAE--VRIAAAGKVTKICRILNPELAIQHILPCVK 325 (536)
Q Consensus 283 ~~l~~ll~d~~~~--vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~ 325 (536)
..+...+.|.+.. |...|.-+++.+.-...++.+...++..+.
T Consensus 490 ~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlm 534 (878)
T KOG2005|consen 490 ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLM 534 (878)
T ss_pred HHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHH
Confidence 4666666666555 444444444443322223444455555554
No 246
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.54 E-value=1.5 Score=35.03 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=70.8
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHh
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLE 482 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (536)
.+++|..-...+..+..- ..| ....+..+.+.+.++++.|+..|+..+..+.+++|..+.. ..++..+..
T Consensus 14 ~~~D~~~il~icd~I~~~--~~~----~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLK--PNG----PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 346777665555555332 112 3345666778888999999999999999999999986533 356666777
Q ss_pred hccC---CChHHHHHHHHHHHHHhhhhChH
Q 009359 483 MINN---PHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 483 ~~~d---~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
++.. .+..||..+++.+..+...++..
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7664 47889999999999999888753
No 247
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.52 E-value=1.7 Score=34.69 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=69.0
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHh
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLE 482 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (536)
.+++|..-...+..+.. + ..-....+..+.+.+.++++.|...|+..+..+.+++|..+.. ..++..|..
T Consensus 14 ~~~dw~~~l~icD~i~~-----~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 14 LEEDWELILEICDLINS-----T-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred CCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH
Confidence 35567655555444422 1 1123445667888889999999999999999999999987533 567778877
Q ss_pred hccCCC--hHHHHHHHHHHHHHhhhhCh
Q 009359 483 MINNPH--YLYRMTILQAISLLAPVMGS 508 (536)
Q Consensus 483 ~~~d~~--~~~r~~~~~~l~~l~~~~~~ 508 (536)
++.++. ..||..++..+...+..+..
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 777642 23999999999999988753
No 248
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=93.50 E-value=0.36 Score=35.50 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=46.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcc--hHHHHHHHHhHHHhhc
Q 009359 174 DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQ--DSVRLLAVEGCGALGK 231 (536)
Q Consensus 174 d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~ 231 (536)
|+.|.+|..|++.++.++..++. ....+.+...+.+.+.|++ ...+..|+.+|..++.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 56799999999999999998875 4566778888888887664 4578888888888754
No 249
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.46 E-value=7.3 Score=37.12 Aligned_cols=104 Identities=10% Similarity=0.026 Sum_probs=61.0
Q ss_pred HhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhh------hchhHHHhhHHHHHHH-hhcCCChHHHHHHHHHHHHHHh-hh
Q 009359 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV------IGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLAS-QL 428 (536)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~------~~~~~~~~~i~~~l~~-~~~~~~~~~R~~a~~~l~~l~~-~~ 428 (536)
++++..+..++.+++.+..-...-+++++.+. +-...+.+.++..+.+ --.|.+-++..+++.++..+.- ..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 55888999999999988888888888888642 1112222334444333 2346677778888888877653 22
Q ss_pred chhhHH-HHHHHHHHHHhcCcchHHHHHHHHHH
Q 009359 429 GVGFFD-DKLGALCMQWLKDKVYSIRDAAANNV 460 (536)
Q Consensus 429 ~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l 460 (536)
+...+. ..+...++..+.-..|.|....+.++
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTl 426 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTL 426 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHH
Confidence 222222 22334455555555555554444443
No 250
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.43 E-value=5.6 Score=37.35 Aligned_cols=136 Identities=10% Similarity=0.157 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhhhhC-HHHHHHhHHHHHHH-hh---CCCCHHHHHH-HHHhhHHHHhhhchh------HHHhhHHHH
Q 009359 334 HVRSALATVIMGMAPILG-KDATIEQLLPIFLS-LL---KDEFPDVRLN-IISKLDQVNQVIGID------LLSQSLLPA 401 (536)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l---~d~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~i~~~ 401 (536)
.+|+..++.+..+..... .+.....++|.+.. .+ ++..+..|.. ++..+..++..++.. .+.+.++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 355666666666655444 22233344444333 22 2334444442 344455555555441 223444444
Q ss_pred HHHhhcC---CChHHHHHHHHHHHHHHhhhchhh------HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh
Q 009359 402 IVELAED---RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 402 l~~~~~~---~~~~~R~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
...+.++ ..+..|......+..+.+..-+.. ..+.++..+.-.+++++.+|...++.++..+...+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555543 247899998888888877543322 2244566677788899999999999999998887655
No 251
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.42 E-value=1.6 Score=35.18 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHhhccCC-ChH---HHHHHHHHHHHHhhh
Q 009359 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLEMINNP-HYL---YRMTILQAISLLAPV 505 (536)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d~-~~~---~r~~~~~~l~~l~~~ 505 (536)
....+..+.+.+.+.++.|...|+..+..+.++.|..+.. ..++..|..++.++ ... ||..++..+..++..
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4556677888899999999999999999999999877543 56788888766543 222 899999999999888
Q ss_pred hCh
Q 009359 506 MGS 508 (536)
Q Consensus 506 ~~~ 508 (536)
++.
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 854
No 252
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=93.33 E-value=0.15 Score=30.98 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHH
Q 009359 434 DDKLGALCMQWLKDKVYSIRDAAANNV 460 (536)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l 460 (536)
.+.+...+.+.+.|+.+.||.+|++.+
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 346777788888888888888887653
No 253
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.32 E-value=6.7 Score=36.31 Aligned_cols=166 Identities=19% Similarity=0.124 Sum_probs=115.2
Q ss_pred HHHHHHHHHhHHHHHhhcChHHHHHhh---hHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHH---HhHHHHHHHhh
Q 009359 294 AEVRIAAAGKVTKICRILNPELAIQHI---LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSLL 367 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~i---~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l 367 (536)
..|-.-|++....+.+.+|++.+...+ .|-+..+....+..||...+..+....-.+|. ... +.++..++..+
T Consensus 69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGL 147 (307)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccc
Confidence 468888999999999999887543332 34444555667788999999988887656666 323 44455556667
Q ss_pred CCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc------h-hh-------H
Q 009359 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG------V-GF-------F 433 (536)
Q Consensus 368 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~------~-~~-------~ 433 (536)
.|+..++...+...+..+...+|.+.+-+.+.-.+. .++..|..|+..+..-..... . +. -
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPD 222 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCC
Confidence 889999999999999999999988754444443333 456788888887765433322 0 00 0
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 009359 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (536)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (536)
..-++..+...+.|++.-|+..++..+-....
T Consensus 223 ~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 223 PGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 23467778888999998899988888766543
No 254
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=1.5 Score=41.21 Aligned_cols=109 Identities=17% Similarity=0.071 Sum_probs=83.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchh---hhhhh
Q 009359 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD---CVAHI 242 (536)
Q Consensus 168 l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l 242 (536)
++.-++..+..||..|...+..+....+.. .....+++.+..+..|.+..||......+..++....++. ...-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 344456778899999999999988773322 2345677778888899999999999999988776655433 35567
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 009359 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (536)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~ 276 (536)
++++...+.+-.+.+|..+...+..+...+++..
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 8888888888899999999999999888776543
No 255
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.27 E-value=0.57 Score=35.94 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=45.8
Q ss_pred HHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHhhh-hhHH--HHHHHHHHhhcCcchHHHHHHHHhHHHhh
Q 009359 163 ELRTIYRQLC-QDDMPMVRRSAATNLGKFAATVEAA-HLKS--EIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (536)
Q Consensus 163 ~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 230 (536)
+++..|..++ .+.++.+-..|+.=+|.++...+.- .+.+ ..-..+++++++++++||..|+.++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3455566666 3447788888999999999887642 1111 24566778888888888888888887654
No 256
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.18 E-value=2.7 Score=34.17 Aligned_cols=141 Identities=18% Similarity=0.181 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhc-CCCCH
Q 009359 177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSW 255 (536)
Q Consensus 177 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~ 255 (536)
+.||...+.++..++....++.+ +.+++.+.+.++. ++......+..|..+.+.+.+ .. .+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~ 66 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-------------FRRSSLSQ 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence 45788889999999888766543 4566767777666 345555666666665542211 00 11122
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC----CcHHHHHHHHHhHHHHHhhcChHHHHH-hhhHHHHHhccC
Q 009359 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD----NEAEVRIAAAGKVTKICRILNPELAIQ-HILPCVKELSSD 330 (536)
Q Consensus 256 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~-~i~~~l~~l~~d 330 (536)
..|...-..+..-. +.++..+.+.+.. ...++...+++++..+..-++...+.+ .+++.+..++.+
T Consensus 67 ~r~~~l~~~l~~~~---------~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 67 ERRRELKDALRSNS---------PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence 23333333333322 2244444444432 226777888888888777665554433 366666666644
Q ss_pred CCHHHHHHHHHHH
Q 009359 331 SSQHVRSALATVI 343 (536)
Q Consensus 331 ~~~~vr~~a~~~l 343 (536)
++- +..|+++|
T Consensus 138 ~~~--~~~A~~cl 148 (148)
T PF08389_consen 138 PEL--REAAAECL 148 (148)
T ss_dssp CCC--HHHHHHHH
T ss_pred HHH--HHHHHHhC
Confidence 433 55555543
No 257
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.97 E-value=4.1 Score=32.86 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhc-CcchHHHHHHHHhHHHhhcccCc
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
.+....+.+-++..++.+...|+..|..+.+.+|.. .....++..+..++. ...+.|+..++..+...+..+..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 345555666667788899999999999888887652 223445566666665 34567888888877777765543
No 258
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.85 E-value=0.83 Score=35.07 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=47.1
Q ss_pred HHHHHHHHh-cCcchHHHHHHHHHHHHHHHHhChh--hh-hhchhHHHHhhccCCChHHHHHHHHHHHHHh
Q 009359 437 LGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPD--WA-MQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (536)
Q Consensus 437 l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~--~~-~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~ 503 (536)
++..+.+++ .+.++.+-..|+.=||.+++.++.- .. .-..-..++++++++|..||..|+.+++.+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 455566666 3346667777888899998887432 11 1446677788899999999999999998875
No 259
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=92.76 E-value=4.1 Score=35.01 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=33.7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHH
Q 009359 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI 317 (536)
Q Consensus 246 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 317 (536)
+..+++-+....-..+...++.+...+|.... ...++..+.++-.+++...|..+=.+++...+..|++.+.
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL 78 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL 78 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH
Confidence 33444434444444555555555555554321 1112222333334444555555555666655555555543
No 260
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=92.72 E-value=3.5 Score=32.86 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcCcch--HHHHHHHHhHHHhhcccC
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDDQD--SVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~ 234 (536)
......+.+-++++++.+...|+..|..+.+.+|... ....++..+..++.+... .||..++..+...+..+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 4455566666778888888888888888888776532 233455566666655432 377777777777666554
No 261
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=14 Score=38.27 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=92.4
Q ss_pred cchhhHHHhhhhhhcc-CCChHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHh--hhhh---HHHHHHHHHHhh
Q 009359 139 FTARVSSCGLFHVAYP-SAPEALKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVE--AAHL---KSEIMSIFEELT 211 (536)
Q Consensus 139 ~~~r~~a~~~l~~~~~-~~~~~~~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~~~--~~~~---~~~l~~~l~~~l 211 (536)
.-.|...+-+++.-.. ....+.+..+...+.++++|. |-.||-.+++++....+... ++.+ .+.+...+.+++
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll 580 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLL 580 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHH
Confidence 3456666666665544 344467778888999999998 78899999999998876432 2222 233334444444
Q ss_pred cCc-chHHHHHHHHhHHHhhcccCch--hhhhhhHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHH
Q 009359 212 QDD-QDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPA 284 (536)
Q Consensus 212 ~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~--d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~ 284 (536)
..- +-..|...+..++.+....++. .+...++.++-.+-+ .+.+-.|.+...++.++...+|.... .+-++|+
T Consensus 581 ~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pV 660 (978)
T KOG1993|consen 581 KAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPV 660 (978)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHH
Confidence 432 2245777777777777665541 233334433333322 24677999999999999999987542 2234454
Q ss_pred HHH
Q 009359 285 YVR 287 (536)
Q Consensus 285 l~~ 287 (536)
+.-
T Consensus 661 Iel 663 (978)
T KOG1993|consen 661 IEL 663 (978)
T ss_pred HHH
Confidence 443
No 262
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.62 E-value=10 Score=36.56 Aligned_cols=233 Identities=9% Similarity=-0.023 Sum_probs=121.5
Q ss_pred chHHHHHHHHHHHHHHhh------cChhhHHhhHHHHHHHHhcCc-ccchhh-HHHhhhhh--hcc-CCChHHHHHHHHH
Q 009359 99 ETCVRDKAVESLCRIGSQ------MREQDVVEHFIPLVKRLAAGE-WFTARV-SSCGLFHV--AYP-SAPEALKTELRTI 167 (536)
Q Consensus 99 ~~~vr~~a~~~l~~~~~~------~~~~~~~~~l~~~l~~l~~~~-~~~~r~-~a~~~l~~--~~~-~~~~~~~~~l~~~ 167 (536)
+..+-..|+++++.+..+ ++.+... .++........++ .+..-. ....++.. +.. .++.+....+...
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~-~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFAS-FIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 556667788888877653 3333322 2333333333333 221111 12222211 111 1222334445555
Q ss_pred HHHhcC-CCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHH
Q 009359 168 YRQLCQ-DDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (536)
Q Consensus 168 l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (536)
+...-+ =++..+-...+.++..+....+.. .....-+|.+...+-+....+|..|...+..+...++++......+.
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~ 217 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVL 217 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 555543 456677777888888888777652 22334556666666667778888888877777766665433333332
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHH
Q 009359 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV 324 (536)
Q Consensus 245 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l 324 (536)
...+....+. .+....++-+..+...-+......++...+..++++.- +..-...+..+...
T Consensus 218 ~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~v~ 279 (372)
T PF12231_consen 218 EDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLKVP 279 (372)
T ss_pred HHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHHHH
Confidence 2222222222 44555555555554432333333355555555554331 01112234555556
Q ss_pred HHhccCCCHHHHHHHHHHHHHhhhhh
Q 009359 325 KELSSDSSQHVRSALATVIMGMAPIL 350 (536)
Q Consensus 325 ~~l~~d~~~~vr~~a~~~l~~l~~~~ 350 (536)
....+++++.+|..|..++..+....
T Consensus 280 e~cFn~~d~~~k~~A~~aW~~liy~~ 305 (372)
T PF12231_consen 280 EKCFNSSDPQVKIQAFKAWRRLIYAS 305 (372)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 66677888888988888888776543
No 263
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.46 E-value=1.3 Score=36.47 Aligned_cols=128 Identities=17% Similarity=0.166 Sum_probs=76.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---hh-hhhhhHHHHHHh
Q 009359 174 DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QD-CVAHILPVIVNF 249 (536)
Q Consensus 174 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~l~~~l~~~ 249 (536)
...+++|..+.-++..+.+. .++.+.+.+.+++...+.+.+..-...++.++..+-...++ +- ..+.+++.+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 44578999999888888633 33556667777777777766656666677777776654433 11 123455666655
Q ss_pred cC--CCCHHHHHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcC-CCcHH-HHHHHHHhHH
Q 009359 250 SQ--DKSWRVRYMVANQLYELCEAVGPE----PTRSDVVPAYVRLLR-DNEAE-VRIAAAGKVT 305 (536)
Q Consensus 250 ~~--d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~ll~-d~~~~-vr~~a~~~l~ 305 (536)
.. .++..+..++++.+..-+ .++ ...++.++++.+..+ +++.. +|..|+-+|.
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc---~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAAC---IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHT---TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 55 556667777777765433 221 223456777777774 34344 5666655543
No 264
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=92.45 E-value=2.9 Score=33.71 Aligned_cols=98 Identities=13% Similarity=0.225 Sum_probs=69.2
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHhChhhhh----hchhHH-
Q 009359 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQ- 479 (536)
Q Consensus 406 ~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~- 479 (536)
+..++|..-...+..+.. ...|+ ...+..+.+.+. .+++.|...|+..+..+.+++|..+.. ..++..
T Consensus 14 l~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~ 87 (141)
T cd03565 14 LQSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV 87 (141)
T ss_pred CCCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence 345678776666666642 22232 334555666666 568889999999999999999987543 566766
Q ss_pred HHhhccC---CChHHHHHHHHHHHHHhhhhChH
Q 009359 480 VLEMINN---PHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 480 l~~~~~d---~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
|..++.. +...|+..++..+..++..++.+
T Consensus 88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 7777653 35689999999999999887654
No 265
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.39 E-value=4.4 Score=34.62 Aligned_cols=71 Identities=27% Similarity=0.253 Sum_probs=42.3
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhC
Q 009359 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (536)
+..++.+.+..-+++..+|..|++.+..+... |- .-...-+|.+..+..|+++.+|..|...+..+.+..+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GL-vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GL-VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CC-CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 45556666666666666677666666665542 10 0123456666666667777777777777666665543
No 266
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=92.23 E-value=5.7 Score=39.49 Aligned_cols=140 Identities=19% Similarity=0.151 Sum_probs=87.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchh----hhhh
Q 009359 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD----CVAH 241 (536)
Q Consensus 166 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~ 241 (536)
..+.+...|-++.+|..+...|+..++..|.-...-..+...--.+.|.+..||....+.+..++...+..+ +.+.
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eR 357 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVER 357 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 345566788899999999999999988765432222233333345789999999999999999988776532 3344
Q ss_pred hHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHh
Q 009359 242 ILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (536)
Q Consensus 242 l~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 309 (536)
....+.+.+ .|.+- ||..+.+.+..+.. +|.- ...-+..+..++=|..|+-|....+.+..+++
T Consensus 358 Fk~rILE~~r~D~d~-VRi~sik~l~~lr~-lg~L--~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 358 FKDRILEFLRTDSDC-VRICSIKSLCYLRI-LGVL--SSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHHhhccch-hhHHHHHHHHHHHH-hccc--chhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 444444443 34444 99999888877653 2321 11223344445555555544444444444444
No 267
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.15 E-value=5.2 Score=32.07 Aligned_cols=73 Identities=12% Similarity=-0.032 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcC------cchHHHHHHHHhHHHhhc
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD------DQDSVRLLAVEGCGALGK 231 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~ 231 (536)
.+.+..+..-+++.++.|...|+..|..+.+.+|... ....++.-+.+++.+ ....|+...+..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3445556677788999999999999999998887632 234455556666643 456888888888888777
Q ss_pred ccC
Q 009359 232 LLE 234 (536)
Q Consensus 232 ~~~ 234 (536)
.++
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 554
No 268
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.12 E-value=0.38 Score=29.00 Aligned_cols=29 Identities=31% Similarity=0.224 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFA 191 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~ 191 (536)
..+|.|..++.++++.++..|+.+|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788899999999999999999999876
No 269
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.05 E-value=5.8 Score=37.45 Aligned_cols=113 Identities=19% Similarity=0.125 Sum_probs=71.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH--HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhh---HHH
Q 009359 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDD 435 (536)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~ 435 (536)
..++..++..+..||..|...+..+........ ..-.+++.+.++.-|.+..+|......+..++....+.. +..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 334555677777777777777766665421111 113455566666677777777777777776555444333 234
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh
Q 009359 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM 473 (536)
Q Consensus 436 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 473 (536)
-+++.+...+..-.++||.-+...+..+...+++.+..
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 45666667777777788888888888777777766543
No 270
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=92.01 E-value=13 Score=36.37 Aligned_cols=202 Identities=10% Similarity=0.064 Sum_probs=102.7
Q ss_pred cCCCHHHHHHHHHHHHHhhhhhCHHH----HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch--hHHHhhHHHHH
Q 009359 329 SDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAI 402 (536)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l 402 (536)
.+++|..-..+.+.+..+......+. +...++..++..+..+++.-|......+..+...+.. ..+...+...+
T Consensus 100 ~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~ 179 (409)
T PF01603_consen 100 LEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIF 179 (409)
T ss_dssp --TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHH
T ss_pred cccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667666666666666655443322 4456667777788888888888877777776654432 12333444444
Q ss_pred HHhhcCC-ChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHhChhhhhhchh
Q 009359 403 VELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIV 477 (536)
Q Consensus 403 ~~~~~~~-~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~i~ 477 (536)
.++..+. ...--..+++.++.+..++.. +.....+...++.+...+. ........+++..+...-. .....++
T Consensus 180 ~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i 257 (409)
T PF01603_consen 180 YRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVI 257 (409)
T ss_dssp HHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHH
T ss_pred HHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHH
Confidence 4444422 333445666677777665442 2222333333333333332 2234555666666655411 1234455
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhhhChHHH---HHhHHHHHHhhcCCccchhhh
Q 009359 478 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINASKDSESVAVT 532 (536)
Q Consensus 478 ~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~---~~~~~~~l~~~l~d~~~~vr~ 532 (536)
..+...---.+..-....+.-+..+...++++.+ ...++..+-.|++.+...|-+
T Consensus 258 ~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAE 315 (409)
T PF01603_consen 258 KGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAE 315 (409)
T ss_dssp HHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5555554445666666667777777776665543 334455555566665555543
No 271
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.76 E-value=0.44 Score=28.71 Aligned_cols=28 Identities=25% Similarity=0.099 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 009359 437 LGALCMQWLKDKVYSIRDAAANNVKRLA 464 (536)
Q Consensus 437 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (536)
.+|.+.+++.+++..|+..|+++++.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677777788888888888888877764
No 272
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=91.71 E-value=0.21 Score=30.31 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=13.8
Q ss_pred chHHHHHHhcCCCcHHHHHHHHH
Q 009359 280 DVVPAYVRLLRDNEAEVRIAAAG 302 (536)
Q Consensus 280 ~l~~~l~~ll~d~~~~vr~~a~~ 302 (536)
.+...+...+.|+++.||.+|++
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHH
Confidence 45555556666666666666654
No 273
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=25 Score=39.04 Aligned_cols=212 Identities=13% Similarity=0.122 Sum_probs=117.1
Q ss_pred CcccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHH
Q 009359 136 GEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDD---MPMVRRSAATNLGKFAATVEA---AHLKSEIMSI 206 (536)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~---~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~ 206 (536)
.+.-.+|.....++..+.+..++- .+..+++.+.....-. .-.+-+.+..+|.-++..+-+ ..-...+++.
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidt 932 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDT 932 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHH
Confidence 345567888888888888887774 2344555554433222 233333344444444332111 1112233444
Q ss_pred HHHhhc-CcchHHHHHHHHhHHHhhcccCc-----------------------------hhhhhhhHHHHHHhcCCCCHH
Q 009359 207 FEELTQ-DDQDSVRLLAVEGCGALGKLLEP-----------------------------QDCVAHILPVIVNFSQDKSWR 256 (536)
Q Consensus 207 l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~l~~~l~~~~~d~~~~ 256 (536)
+..+.. ..+-.+-..|+..+-.+++.+.. +...=.++..+.+++.|.-..
T Consensus 933 l~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~e 1012 (1610)
T KOG1848|consen 933 LLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAE 1012 (1610)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHH
Confidence 333332 22333444555544444433211 112223666778889999999
Q ss_pred HHHHHHHHHHHHHHHhCCCccc----cchHHHHHHhcC-------CC--cHHH----HHHHHHhHHHHHhhcCh------
Q 009359 257 VRYMVANQLYELCEAVGPEPTR----SDVVPAYVRLLR-------DN--EAEV----RIAAAGKVTKICRILNP------ 313 (536)
Q Consensus 257 vR~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~ll~-------d~--~~~v----r~~a~~~l~~~~~~~~~------ 313 (536)
||..|+++|-++....|..... .-+...+..++. +. ..++ -+..+-.++++++.+..
T Consensus 1013 VRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ll 1092 (1610)
T KOG1848|consen 1013 VRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLL 1092 (1610)
T ss_pred HhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999988776654432 234444555553 11 1112 12334444444443321
Q ss_pred -----HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhh
Q 009359 314 -----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (536)
Q Consensus 314 -----~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~ 347 (536)
-...+.++..+..+..|.++.+..+++.++..+.
T Consensus 1093 nln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1093 NLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred hcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 1345778888888899999999999999888764
No 274
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=91.63 E-value=4.6 Score=34.71 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhhhCHH--HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHH
Q 009359 338 ALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415 (536)
Q Consensus 338 ~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~ 415 (536)
.+...++.+...+|.. .....++..+-++-.+++...|..+-.+++..+..+|++.+. .++|.-.+- .+....-|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL-~~lPLnl~~-~~~~~~~ra 96 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL-SILPLNLDN-ADDSQPGRA 96 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH-HHCCCCccC-CCcCCcccc
Confidence 3444444444444432 122344444555555666778888888888888888887653 234421111 112222233
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHH
Q 009359 416 AIIEYIPLLASQLGVGFFDDKLGALCMQ 443 (536)
Q Consensus 416 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 443 (536)
-.+-.+..-.....-.+|.+.++|+...
T Consensus 97 WLLPlLr~~i~~~~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 97 WLLPLLRDHIRNASLSFFVEEFLPLARR 124 (198)
T ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 3333333323333445677788886544
No 275
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.32 E-value=5.9 Score=31.59 Aligned_cols=74 Identities=18% Similarity=0.087 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHhhcC---cchHHHHHHHHhHHHhhcccC
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQD---DQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~ 234 (536)
......+.+-++.+++.++..|+..|..+.+.+|.... ....+.-+..++.+ .+..||..+++.+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34455566666777888888888888888877765221 11333335555543 355677777777776666554
Q ss_pred c
Q 009359 235 P 235 (536)
Q Consensus 235 ~ 235 (536)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 3
No 276
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=91.08 E-value=5.6 Score=30.89 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHh
Q 009359 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (536)
Q Consensus 159 ~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~ 195 (536)
....++.+.|..-+++.++.|+..+++.|..++...+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 4566788899999999999999999999999888654
No 277
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.08 E-value=12 Score=36.86 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHh----------cCcchHHHHHHHHHHHHHHHHhChhh--hhhchhHHHHhhccCC--ChHHHHHHHHH
Q 009359 433 FDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQA 498 (536)
Q Consensus 433 ~~~~l~~~l~~~l----------~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~--~~~~r~~~~~~ 498 (536)
+...++|.++.++ .|+.+.+|.-|+..+..+++.++... ...++...+.+.+.|+ .+...-.++..
T Consensus 285 Ylh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~g 364 (576)
T KOG2549|consen 285 YLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAG 364 (576)
T ss_pred HHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHH
Confidence 3455666655543 36667788888888888888777542 2355666666666665 45556666666
Q ss_pred HHHHh
Q 009359 499 ISLLA 503 (536)
Q Consensus 499 l~~l~ 503 (536)
+..++
T Consensus 365 L~~lg 369 (576)
T KOG2549|consen 365 LSELG 369 (576)
T ss_pred HHHhh
Confidence 65554
No 278
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.03 E-value=5.5 Score=30.29 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccC--CChHHHHHHHHHHHHHhhhhChHHHHH
Q 009359 448 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSEITCS 513 (536)
Q Consensus 448 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--~~~~~r~~~~~~l~~l~~~~~~~~~~~ 513 (536)
....-|..++.+++.+.+..|+. ...+.|.++..++. .....|..+++++..+.+.++.+...+
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~--i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ 92 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSH--ISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGP 92 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHH
Confidence 55667889999999999844442 33445555444332 133789999999999999988765433
No 279
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=90.92 E-value=10 Score=33.04 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=70.8
Q ss_pred cchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC--cccchhhHHHhhhhhhccCCChHHHHHH
Q 009359 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAG--EWFTARVSSCGLFHVAYPSAPEALKTEL 164 (536)
Q Consensus 87 ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~--~~~~~r~~a~~~l~~~~~~~~~~~~~~l 164 (536)
+..+...+..++..+.|..|+..+.......+... ++.+.....+ .+..+-..+..+++.+... .+..
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~-----~~~~ 116 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD-----YPEF 116 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC-----ChhH
Confidence 33445556666666777777777666544443332 2222222222 2323343444443333221 1223
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcc
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 232 (536)
.+.+.....|++.-+|+.|+-+.-.+.+. ...+.+...+..++.|++.-|+++.--.|..++..
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 45666777777777777766543333332 22345566666777777777777777777766653
No 280
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=90.68 E-value=14 Score=36.99 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=71.4
Q ss_pred HHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc----ccch
Q 009359 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RSDV 281 (536)
Q Consensus 206 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l 281 (536)
.+.....|-++.+|..+...+......++.--..-..+.+.-=.++|.+..||..+.+.+..++..-+.... .+.+
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRF 358 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERF 358 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 455667788999999999999988876664222122333333467888999999999999999876554332 2234
Q ss_pred HHHHHHhc-CCCcHHHHHHHHHhHHHHHhh
Q 009359 282 VPAYVRLL-RDNEAEVRIAAAGKVTKICRI 310 (536)
Q Consensus 282 ~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~ 310 (536)
...+++.+ .|.+- ||..+++.+..+...
T Consensus 359 k~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 359 KDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 44444444 46665 999999988877553
No 281
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.55 E-value=24 Score=36.69 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=38.4
Q ss_pred HHHHHHHhc-ChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccccc--CCchHHHHHHHHHHhchh
Q 009359 11 IAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGVFI 75 (536)
Q Consensus 11 i~~l~~~l~-s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~--d~~~~vr~~a~~~l~~l~ 75 (536)
|+.|.+-+. ++=.+-|+.|+++|..+++..-.+..-.-+-|++.-+. ..+++.-..+.+.+..+.
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 566666665 56678899999999998876543322222233332222 245666666666555443
No 282
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=90.46 E-value=4.9 Score=31.06 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=27.6
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH
Q 009359 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~ 433 (536)
..++..|.+-+++++|++..-++..+..+.+..|..+.
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~ 73 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFH 73 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHH
Confidence 45666677777777788888888888887777776653
No 283
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=89.62 E-value=8 Score=29.84 Aligned_cols=38 Identities=16% Similarity=0.016 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA 197 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~ 197 (536)
....++..+..-+++++|.+...|+..|..+.+..++.
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~ 71 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER 71 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence 34567777777788889999999999999999887753
No 284
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=89.41 E-value=1.4 Score=36.46 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=42.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc
Q 009359 174 DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 174 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
|+.-++|++|.+++..+.+.+........+++.+...+.| +..+|..+...+..++...+.
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~ 98 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE 98 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH
Confidence 5567788888888888877655444455667777788888 777888888888887765544
No 285
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.29 E-value=19 Score=33.79 Aligned_cols=154 Identities=9% Similarity=0.119 Sum_probs=88.9
Q ss_pred HHHHHHHHhhHHHHhhhch-hHHHhhHHHHHHH-hhc---CCChHHHH-HHHHHHHHHHhhhchhh------HHHHHHHH
Q 009359 373 DVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVE-LAE---DRHWRVRL-AIIEYIPLLASQLGVGF------FDDKLGAL 440 (536)
Q Consensus 373 ~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~-~~~---~~~~~~R~-~a~~~l~~l~~~~~~~~------~~~~l~~~ 440 (536)
.+|+..++.+..+...... +.+.+.++|.+.+ .+. +..+..|. .++.++..+...++... ..+.+...
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3555555555555544432 2223333333332 222 23344454 45566666666665522 23444444
Q ss_pred HHHHhcC---cchHHHHHHHHHHHHHHHHhChhh------hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhCh---
Q 009359 441 CMQWLKD---KVYSIRDAAANNVKRLAEEFGPDW------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--- 508 (536)
Q Consensus 441 l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~------~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~--- 508 (536)
...++.+ .-|+.|..-.+.+..+...+-+.. ....++..+.--+++++.++...++.++..+...+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~ 201 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNP 201 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 5555543 458999999999999988754322 2245666666678899999999999999999887765
Q ss_pred ----HHHHHhHH---HHHHhhcCCc
Q 009359 509 ----EITCSQLL---PVVINASKDS 526 (536)
Q Consensus 509 ----~~~~~~~~---~~l~~~l~d~ 526 (536)
+|+..+++ ..++..+.|+
T Consensus 202 ~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 202 EFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 34444443 3444445554
No 286
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=88.97 E-value=6.7 Score=29.82 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC--cchHHHHHHHHhHHHhhcccCchh
Q 009359 175 DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD--DQDSVRLLAVEGCGALGKLLEPQD 237 (536)
Q Consensus 175 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~ 237 (536)
.+..-|..+..+++.+.+..++ +.....|.+...++. +.+++|..|++++..+...+++++
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~--~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGS--HISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHH
Confidence 5667788888999998884433 223344444444432 133788889999998888877643
No 287
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=88.75 E-value=21 Score=33.62 Aligned_cols=181 Identities=8% Similarity=0.040 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchh------h----hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009359 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD------C----VAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (536)
Q Consensus 201 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~----~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~ 270 (536)
..+++.+...+..-+.+.|..+...++.+...-.... + .+.++..+....++++-. -..|.+..
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dia------l~~g~mlR 148 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIA------LNCGDMLR 148 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTH------HHHHHHHH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcccc------chHHHHHH
Confidence 4566667777777777778777777777665432210 1 134555566666554421 11122221
Q ss_pred HhCC-Cc-----cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh---H---HHHHhhhHHHHHhccCCCHHHHHH
Q 009359 271 AVGP-EP-----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPCVKELSSDSSQHVRSA 338 (536)
Q Consensus 271 ~~~~-~~-----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~i~~~l~~l~~d~~~~vr~~ 338 (536)
.+-. +. ..+..+-.+.+....++-+|-.-|..++..+...... + .-.+..+..+..++.++|+-+|+.
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 1111 00 0122334466777888888988888888776654221 1 112455667778888899999999
Q ss_pred HHHHHHHhhhhhC-HHH-----HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHh
Q 009359 339 LATVIMGMAPILG-KDA-----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 339 a~~~l~~l~~~~~-~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (536)
+++.++.+...-. ... -.+.-+..++.+|+|....+|..|+..+.-+..
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 9999998753211 111 114456777788888888888888887777654
No 288
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=88.71 E-value=34 Score=38.51 Aligned_cols=68 Identities=10% Similarity=0.170 Sum_probs=40.5
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhh
Q 009359 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (536)
Q Consensus 281 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 348 (536)
++..+++.|+...-.|...++.+|-.+......+ .+....++.+..++.+++..+-...+.++-.+..
T Consensus 531 CLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 531 CLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 4566666666665556666666665555433222 2234456777788877777776666666666543
No 289
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.50 E-value=22 Score=33.38 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHhhc----CcchHHHHHHHHhHHHhhc
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL--KSEIMSIFEELTQ----DDQDSVRLLAVEGCGALGK 231 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~ 231 (536)
+..+..+++.+|+.++..|+..+..++...+.... ...+++.+.+.+. .++..++..++.++..+..
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 44455577888999999999999998876544221 1344555555544 3455667778888877764
No 290
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=88.49 E-value=49 Score=37.40 Aligned_cols=211 Identities=12% Similarity=0.090 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcc------ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc--ChHHHHH---hhhH
Q 009359 254 SWRVRYMVANQLYELCEAVGPEPT------RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NPELAIQ---HILP 322 (536)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~--~~~~~~~---~i~~ 322 (536)
.-.+|..+.++|.+|. ||.... ...++..++..+.....++.+.....|..+.=.. +.+.++. .+..
T Consensus 364 ~~aLRrYa~MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVta 441 (2195)
T KOG2122|consen 364 CNALRRYAGMALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTA 441 (2195)
T ss_pred HHHHHHHHHHHhhccc--cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHH
Confidence 4457888888888874 444322 2346666666555443344333322222221100 1111111 1111
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhhhhCH--HHH--HHhHHHHHHHhhCCCC----HHHHHHHHHhhHHHHhhhch-hH
Q 009359 323 CVKELSSDSSQHVRSALATVIMGMAPILGK--DAT--IEQLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGI-DL 393 (536)
Q Consensus 323 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~-~~ 393 (536)
+....+..+....-.+++.+|..|+..+.. ..+ .+-.+-+|..+|.-+. -.+-+.+...|.++...+.. +.
T Consensus 442 La~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~ 521 (2195)
T KOG2122|consen 442 LAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED 521 (2195)
T ss_pred HHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch
Confidence 122223333433445555566665543321 111 1334445555554321 12223333333333322211 11
Q ss_pred H-----HhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch--hh-HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 009359 394 L-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (536)
Q Consensus 394 ~-----~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (536)
+ ....+..|+..+++....+-..+|..|-.+...... ++ +....++.+..+++.++..+-..++.+|..+..
T Consensus 522 yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 522 YRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 1 234455666666666655555666666555432221 11 223456778888888888888888888877765
Q ss_pred H
Q 009359 466 E 466 (536)
Q Consensus 466 ~ 466 (536)
+
T Consensus 602 ~ 602 (2195)
T KOG2122|consen 602 F 602 (2195)
T ss_pred C
Confidence 4
No 291
>PF05536 Neurochondrin: Neurochondrin
Probab=88.25 E-value=32 Score=35.08 Aligned_cols=175 Identities=13% Similarity=0.042 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHHHhhcC---hhhHHhhHHHHHHHHhcCccc-chhhHHHhhhhhhccCCCh-H--HHHHHHHHHHHh
Q 009359 99 ETCVRDKAVESLCRIGSQMR---EQDVVEHFIPLVKRLAAGEWF-TARVSSCGLFHVAYPSAPE-A--LKTELRTIYRQL 171 (536)
Q Consensus 99 ~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~-~~r~~a~~~l~~~~~~~~~-~--~~~~l~~~l~~l 171 (536)
....+..|+..|..++..-. .+++.. .+|.+.+....... ..-.-+..++..+...-.. . .....++.+.+.
T Consensus 70 ~~~~~~LavsvL~~f~~~~~~a~~~~~~~-~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCRDPELASSPQMVS-RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHHHcCChhhhcCHHHHH-HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence 44556667777776666110 112222 34555444433332 4444555666666533222 1 222334444444
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc--------hh
Q 009359 172 CQDDMPMVRRSAATNLGKFAATVEAA------HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--------QD 237 (536)
Q Consensus 172 l~d~~~~vr~~a~~~l~~~~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~~ 237 (536)
..+ .+.....|+..+..+....+.+ .....+++.+...........+-..+..++.+....+. ..
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 444 4566778888888877665532 22234556666666655556677777888777665531 23
Q ss_pred hhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCC
Q 009359 238 CVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE 275 (536)
Q Consensus 238 ~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~~ 275 (536)
....+...+..++.++ .+.-|..+......+.+.+|.+
T Consensus 228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 4455666677766664 7788999999999998888753
No 292
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=87.96 E-value=19 Score=32.12 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=43.6
Q ss_pred HhhHHHHHHHHhcCc-ccchhhHHHhhhhhhccCCChHHH-----HHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009359 123 VEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALK-----TELRTIYRQLCQDDMPMVRRSAATNLGKFAA 192 (536)
Q Consensus 123 ~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~-----~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 192 (536)
--++.|++..-.+.. ....|.++...++.+.+.-+.++. .+++|.+...++..+...+..|...+..+..
T Consensus 93 plyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 93 PLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp GGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred hhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 345778886555443 456788888999988886666532 5577888777777666666666666666543
No 293
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.94 E-value=21 Score=32.58 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhc
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK 231 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 231 (536)
...++.+.+++.+..+ -.-|+.++.+++..-+- ....+.++..++..+.|+.+..-...+..+..+++
T Consensus 43 ~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred hhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 3455666777777666 44566677776654221 23334455566666666655555555555555543
No 294
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.88 E-value=5.6 Score=39.03 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=74.2
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhh----hhchhHHH
Q 009359 405 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQV 480 (536)
Q Consensus 405 ~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~i~~~l 480 (536)
.+.+++|..-..+|..|..- -+ -.+..+-.+.+.+.+.++.|..-|+..|..+.+++|..|. ..++++.+
T Consensus 13 ~l~~pDWa~NleIcD~IN~~---~~---~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em 86 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINST---EG---GPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM 86 (470)
T ss_pred cccCccHHHHHHHHHHHhcC---cc---CcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45677887766666655321 11 1235666788899999999999999999999999998754 36788887
Q ss_pred HhhccC--CChHHHHHHHHHHHHHhhhhCh
Q 009359 481 LEMINN--PHYLYRMTILQAISLLAPVMGS 508 (536)
Q Consensus 481 ~~~~~d--~~~~~r~~~~~~l~~l~~~~~~ 508 (536)
...... ++..||..++..|..+...+++
T Consensus 87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 87 VKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 776554 5889999999999999988876
No 295
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.56 E-value=13 Score=33.55 Aligned_cols=130 Identities=16% Similarity=0.232 Sum_probs=67.1
Q ss_pred hCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCC------ChHHHHHHHHHHHHHHhhhc--hhhHHHHHH
Q 009359 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLG--VGFFDDKLG 438 (536)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~------~~~~R~~a~~~l~~l~~~~~--~~~~~~~l~ 438 (536)
+...+...|.+|+.++..=. | ...++|.+..++++. +-..-...+.....+...-. .+.+..+++
T Consensus 207 ~dEs~~~~r~aAl~sLr~ds---G----lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 207 LDESDEQTRDAALESLRNDS---G----LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHHHHHhccCc---c----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 34445667777776664421 1 255666666555532 22222233333333332111 122345666
Q ss_pred HHHHHHh------cCc----chHHHHHHHHHHHHHHHHhChhh--hhhchhHHHHhhccCC--ChHHHHHHHHHHHHHh
Q 009359 439 ALCMQWL------KDK----VYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAISLLA 503 (536)
Q Consensus 439 ~~l~~~l------~d~----~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~--~~~~r~~~~~~l~~l~ 503 (536)
|.++.++ .++ ...+|..|+..++-.++.++... ...++...+...+-|. -+...-.|+.+++.+.
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 6665543 122 23599999999999888887642 2245555555544443 3344555555555443
No 296
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=87.55 E-value=17 Score=31.18 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=38.6
Q ss_pred HHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009359 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (536)
Q Consensus 205 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 271 (536)
+.+.....+++.-+|..++..+...... +...+.++..+..+..|++..||.+++.+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 5556666666666666665555444332 223455666666666666677777777777666644
No 297
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.06 E-value=11 Score=42.13 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcChhhHHhh------HHHHHHHHhc--CcccchhhHHHhhhhhhccCCChHH--HHHHHHHHHHhc
Q 009359 103 RDKAVESLCRIGSQMREQDVVEH------FIPLVKRLAA--GEWFTARVSSCGLFHVAYPSAPEAL--KTELRTIYRQLC 172 (536)
Q Consensus 103 r~~a~~~l~~~~~~~~~~~~~~~------l~~~l~~l~~--~~~~~~r~~a~~~l~~~~~~~~~~~--~~~l~~~l~~ll 172 (536)
+..+..++..+...-..+.+... ..|.+.++.+ -.....+.....++..++......- ++.+....+.-.
T Consensus 1471 ~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~t 1550 (1621)
T KOG1837|consen 1471 GTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVADKDDLKPLNQKILKKT 1550 (1621)
T ss_pred HHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccCChhhhHHHHHHHHHHh
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc
Q 009359 173 QDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 173 ~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
.|++...|..|+..+..+....+. -...+.++|.+.+++.|.+++|...+.+.+..+-+.+|+
T Consensus 1551 rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1551 RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
No 298
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=86.88 E-value=38 Score=34.34 Aligned_cols=157 Identities=12% Similarity=0.117 Sum_probs=88.7
Q ss_pred hhhHHhhHHHHHHHHhcCcccc--hhhHHHhhhhhhccCCChHHHHH----HHHHHHHhc-----CCCChHHHHHHHHHH
Q 009359 119 EQDVVEHFIPLVKRLAAGEWFT--ARVSSCGLFHVAYPSAPEALKTE----LRTIYRQLC-----QDDMPMVRRSAATNL 187 (536)
Q Consensus 119 ~~~~~~~l~~~l~~l~~~~~~~--~r~~a~~~l~~~~~~~~~~~~~~----l~~~l~~ll-----~d~~~~vr~~a~~~l 187 (536)
..+.+.+....+-.-..+..|. .-...|-+++.+...+++...+. ++..++.++ +|.-..|.......+
T Consensus 475 v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvv 554 (1053)
T COG5101 475 VDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVV 554 (1053)
T ss_pred hhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeee
Confidence 3444455555555555555443 33467888888888887763333 333334443 233233333333333
Q ss_pred HHHHHHHhh-hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc----------hhhhhhhHHHHHHhcCCCCHH
Q 009359 188 GKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----------QDCVAHILPVIVNFSQDKSWR 256 (536)
Q Consensus 188 ~~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~l~~~l~~~~~d~~~~ 256 (536)
|..-.-+.. -.+...++..+.+.+....+.|+..|+.+.-.+.+.++. +.+...++.-+-+...|-.+.
T Consensus 555 GQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pq 634 (1053)
T COG5101 555 GQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQ 634 (1053)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChH
Confidence 333222211 133455666667777777778999999999999887753 223333444444455566677
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 009359 257 VRYMVANQLYELCEAVGPE 275 (536)
Q Consensus 257 vR~~~~~~l~~l~~~~~~~ 275 (536)
-.....+++|-+.+..+..
T Consensus 635 Q~htfYeAcg~vIse~p~~ 653 (1053)
T COG5101 635 QKHTFYEACGMVISEVPKT 653 (1053)
T ss_pred HHhHHHHHHhHHHhccchh
Confidence 6777777777777655543
No 299
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=40 Score=34.42 Aligned_cols=251 Identities=16% Similarity=0.158 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcch--HHHHHHHHhHHHhhcccCchhh
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD--SVRLLAVEGCGALGKLLEPQDC 238 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~ 238 (536)
.+..+-.|...+++++..+|..++-.||-.-.....+.... .+...+.|.+. +|...|.-.|+.+.-....++.
T Consensus 450 ~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dv 525 (878)
T KOG2005|consen 450 CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDV 525 (878)
T ss_pred cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH----HHhHHhcCCCCchhHHHHHHhhcceeEEecCChHH
Confidence 34566677777888888999998888876544333333333 33445555554 4555555555554322222334
Q ss_pred hhhhHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHH
Q 009359 239 VAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA 316 (536)
Q Consensus 239 ~~~l~~~l~~~~~--d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (536)
...++..+..-.+ -.+...|..+ -.|+ .-++|+... .......++.-+..+|.. +..+-..|.+.|.-.+
T Consensus 526 ts~ilqtlmekse~El~d~~~RFL~-LGL~--llflgkqe~----~d~~~e~~~~i~~~~~~~-~~~lv~~caYaGTGnv 597 (878)
T KOG2005|consen 526 TSSILQTLMEKSETELEDQWFRFLA-LGLA--LLFLGKQES----VDAVVETIKAIEGPIRKH-ESILVKSCAYAGTGNV 597 (878)
T ss_pred HHHHHHHHHHhhhhhhhchHHHHHH-HHHH--HHHhcccch----HHHHHHHHHHhhhHHHHH-HHHHHHHhhccccCce
Confidence 4444444433222 1233344332 1122 223343221 122222222112222222 2222233333332211
Q ss_pred HHhhh-HHHHHhccCCCHH---HHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchh
Q 009359 317 IQHIL-PCVKELSSDSSQH---VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (536)
Q Consensus 317 ~~~i~-~~l~~l~~d~~~~---vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (536)
. .|- ..+.....++... -...++-.+..+ .+|.+.-.+..+..+-.++.=.++.+|.+.=-+++-++-. +.
T Consensus 598 l-~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAli--AMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvS--NP 672 (878)
T KOG2005|consen 598 L-KIQSQLLLSFCGEHDADLESEQELAVLGIALI--AMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVS--NP 672 (878)
T ss_pred E-EechhhhhhhcCCCccchhhhccchhhhhhhh--hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccC--CC
Confidence 0 000 1111222222111 111122122211 2344433455566677777777888888877777766532 22
Q ss_pred HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch
Q 009359 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (536)
Q Consensus 393 ~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~ 430 (536)
. -.++..+.++..|.+..+-..++.+++-++....+
T Consensus 673 q--~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 673 Q--VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNN 708 (878)
T ss_pred c--chHHHHHHHhccCcchHHHHHHHHHhccccCCcch
Confidence 2 35778888888888888888888888777654444
No 300
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=86.67 E-value=13 Score=28.93 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=35.9
Q ss_pred hhHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q 009359 396 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 396 ~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (536)
..++|.+.+.++ ......|.++...++.++....-. ...+.++..+.+....... ...++-++..+++.-
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 556677766666 555667777777777666543321 1112222222222222222 355666676666544
No 301
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.59 E-value=39 Score=34.26 Aligned_cols=92 Identities=12% Similarity=0.200 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHH--HHHHHHHHHhhhhCh------
Q 009359 437 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRM--TILQAISLLAPVMGS------ 508 (536)
Q Consensus 437 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~--~~~~~l~~l~~~~~~------ 508 (536)
+..++.+.+.+.-..+-.+..+-+..+......+ +...++..+.+++.|.+..+|. .+++.+-.|...-|.
T Consensus 461 VFtiYFrILkn~~~tll~~vlEGlakf~h~inve-f~~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~lniD~ 539 (704)
T KOG2153|consen 461 VFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVE-FLGDLLKVLKELLEDIELSYREALLCVQTAFCILSGQGEKLNIDL 539 (704)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHH-HhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceeeccCH
Confidence 4445556666554444455555555555444444 3356666777777777444443 333333334333332
Q ss_pred HHHHHhHHHHHHhhcCCccch
Q 009359 509 EITCSQLLPVVINASKDSESV 529 (536)
Q Consensus 509 ~~~~~~~~~~l~~~l~d~~~~ 529 (536)
..|.+++...+....-+++.+
T Consensus 540 ~~fv~~lY~~l~~~~~~~~~~ 560 (704)
T KOG2153|consen 540 GKFVDHLYKMLFPMNLGPDDD 560 (704)
T ss_pred HHHHHHHHHHhcccccCCCcc
Confidence 337888888888877777654
No 302
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=86.49 E-value=20 Score=30.79 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCC
Q 009359 252 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS 331 (536)
Q Consensus 252 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~ 331 (536)
-++|.+-...+..+..-... .....+.+.....+++.-+|.++...+...... +...+.++..+..+..|+
T Consensus 83 ~~~W~~~D~~~~~~~~~~~~------~~~~~~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~ 153 (197)
T cd06561 83 IDNWDLVDSLCANLLGKLLY------AEPELDLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDE 153 (197)
T ss_pred CchHHHHHHHHHHHHHHHHh------cCcchHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCH
Confidence 35777766554443222211 111226777888888888888887777665543 223466677777888888
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 009359 332 SQHVRSALATVIMGMAPI 349 (536)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~ 349 (536)
+..||.++..+|..++..
T Consensus 154 ~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 154 EYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 899999999988888765
No 303
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=85.92 E-value=3.9 Score=33.88 Aligned_cols=55 Identities=18% Similarity=0.005 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 411 ~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
-.+|.+|.+++..+........-...++..+...+.| ...||.-+...+..++..
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~ 95 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQL 95 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHh
Confidence 3455555555555544433333333445556666666 666666666666666544
No 304
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=39 Score=33.57 Aligned_cols=282 Identities=11% Similarity=0.085 Sum_probs=130.7
Q ss_pred HHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 009359 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (536)
Q Consensus 203 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 282 (536)
-+..+.+.+-..++.++..|+-.++--+-..-+ -.+.++..+.+.+++++...+.+++-.++.... |.. .+.++
T Consensus 414 gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~--E~~palalLs~yl~s~s~k~~~aaiLGlg~afs--Gt~--~eevl 487 (881)
T COG5110 414 GLETLDKYLYADESYRKAGALLGIGLSGLRVFE--ERPPALALLSNYLQSSSSKHVIAAILGLGAAFS--GTQ--AEEVL 487 (881)
T ss_pred hHHHHHHHHhcCcccccccceeeeeeccccccc--ccchHHHHHHHhccCCchHHHHHHHhhhHHhhc--CCc--HHHHH
Confidence 445555555555555665555444332222111 134466666777777777777766655554332 321 23566
Q ss_pred HHHHHhcCCCcHHHHHHHHH--hHHHHHhhcChHHHHHhhhHHHHHhcc--CCCHHHHHHHHHHHHHhhhhhCHHHHHHh
Q 009359 283 PAYVRLLRDNEAEVRIAAAG--KVTKICRILNPELAIQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGKDATIEQ 358 (536)
Q Consensus 283 ~~l~~ll~d~~~~vr~~a~~--~l~~~~~~~~~~~~~~~i~~~l~~l~~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 358 (536)
..+..+..+.+..+...+.. +++.+.-...+..+...++..+...-. .+...+|-.++- ++.+. .|.+...+.
T Consensus 488 ~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLg-La~Lf--~g~~d~~d~ 564 (881)
T COG5110 488 ELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALG-LASLF--YGRKDQVDD 564 (881)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHH--ccccchhHH
Confidence 66666665555534433333 333332211223344455554433221 222334443321 22221 122221222
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCC--C-hHHHHHHHHH---HHHHHhhhchhh
Q 009359 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--H-WRVRLAIIEY---IPLLASQLGVGF 432 (536)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~--~-~~~R~~a~~~---l~~l~~~~~~~~ 432 (536)
....+.. +.. +- ......+-..|.+.|-... .++..+....... + -.--.+.++. ++.-.-.+|.+.
T Consensus 565 v~eti~a-Ieg--~l--s~~~eiLv~~c~Y~GTGdv--l~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedi 637 (881)
T COG5110 565 VEETIMA-IEG--AL--SKHEEILVKGCQYVGTGDV--LVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDI 637 (881)
T ss_pred HHHHHHH-hcc--hh--hhhHHHHHhhceecccCcH--HHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchh
Confidence 2221111 000 00 0112223333333332211 1222222211111 0 0111222332 232223455554
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
-.+-.+..+...+.-.++.+|...=-++|-+... . -+-+++..|.+..+|.+.++-.+++.++|-++-
T Consensus 638 g~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~S-n---PQm~vfDtL~r~shd~dl~v~~ntIfamGLiGA 705 (881)
T COG5110 638 GSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPS-N---PQMNVFDTLERSSHDGDLNVIINTIFAMGLIGA 705 (881)
T ss_pred hHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCC-C---cchHHHHHHHHhccccchhHHHHHHHHhhcccc
Confidence 4555555666677777788888777666665432 1 235688888888999999999999988887654
No 305
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=85.47 E-value=1.1 Score=24.71 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC
Q 009359 177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD 213 (536)
Q Consensus 177 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d 213 (536)
|.||..|+.+|+++.. +..++.+.+.++|
T Consensus 1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD--------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence 4678888888887643 2344555555554
No 306
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=85.40 E-value=50 Score=34.36 Aligned_cols=330 Identities=15% Similarity=0.134 Sum_probs=160.5
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcc-----cccccc-ccCCchHHHHHHHHHHhchhcccCC-cc
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKEL-----IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG-LE 82 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l-----~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~-~~ 82 (536)
.+.+.+..+.+.++.+.-.|.-.+..++. |.+..+.++ +|.+.. +.+.+.+|++.++.+|.++.-.-.. .+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcf--gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCF--GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHh--hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 35667777888888777777666655543 333322211 344444 6678999999999999988542221 11
Q ss_pred -----chhccchHHHhhhcCcchHHHHHHHHHHHHHHhh--cChhhHHhhHHHHHHHHhcCc--------c------cch
Q 009359 83 -----YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ--MREQDVVEHFIPLVKRLAAGE--------W------FTA 141 (536)
Q Consensus 83 -----~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~l~~~~--------~------~~~ 141 (536)
...-+..+++.+-...|.++|+.....|.++.+. +....+... ++.+..-...+ . ..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCccccccccee
Confidence 1122222333333446778898888777777664 111111111 11111111001 1 111
Q ss_pred hhHHHhhhhhhccCCChH---------HHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 009359 142 RVSSCGLFHVAYPSAPEA---------LKTELRTIYRQLCQ--DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEEL 210 (536)
Q Consensus 142 r~~a~~~l~~~~~~~~~~---------~~~~l~~~l~~ll~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~ 210 (536)
=..+..++..+.....+. ..+.++-.+..+.+ +.+..--+.|...+.++.-.+..+ +.+.....
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~E-----vp~~~~~~ 465 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAE-----VPPKYRQV 465 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhh-----cCHhhhhH
Confidence 123344444443322211 12223333332322 223333345555666655444322 11111111
Q ss_pred hcCcc--hHHH--HHHHHhHHHhhcc---------cCchh---------hhhhhHHH-HHHhcCCCCHHHHHHHHHHHHH
Q 009359 211 TQDDQ--DSVR--LLAVEGCGALGKL---------LEPQD---------CVAHILPV-IVNFSQDKSWRVRYMVANQLYE 267 (536)
Q Consensus 211 l~d~~--~~vr--~~a~~~l~~l~~~---------~~~~~---------~~~~l~~~-l~~~~~d~~~~vR~~~~~~l~~ 267 (536)
+...+ ..+. .....+++.-.+. +++.. +.+.++.. +.-+....+..+-.+++-+|.+
T Consensus 466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN 545 (717)
T ss_pred hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence 11110 0000 0122222222111 11100 11223333 2223334566777778788877
Q ss_pred HHHHhCCC-------c-cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHH-HHHhhhHHHHHhccC------CC
Q 009359 268 LCEAVGPE-------P-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-AIQHILPCVKELSSD------SS 332 (536)
Q Consensus 268 l~~~~~~~-------~-~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~i~~~l~~l~~d------~~ 332 (536)
+....+.. . ..+..+|.+.+++...+..|..+++.++..+......+. +-...++-|...+-+ .+
T Consensus 546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~s 625 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLS 625 (717)
T ss_pred hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCch
Confidence 76433221 1 245678999999998888999999999999887654442 223445555544432 34
Q ss_pred HHHHHHHHHHHHHhh
Q 009359 333 QHVRSALATVIMGMA 347 (536)
Q Consensus 333 ~~vr~~a~~~l~~l~ 347 (536)
+.+-.+++.++..+.
T Consensus 626 edtv~~vc~tl~niv 640 (717)
T KOG1048|consen 626 EDTVRAVCHTLNNIV 640 (717)
T ss_pred HHHHHHHHHhHHHHH
Confidence 666667777776665
No 307
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=85.25 E-value=11 Score=28.67 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccC--CChHHHHHHHHHHHHHhhhhChHH
Q 009359 451 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSEI 510 (536)
Q Consensus 451 ~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--~~~~~r~~~~~~l~~l~~~~~~~~ 510 (536)
.-|..++.+++.+.+..|+. .....|.++-.++. .....|..+++++..+...+..+.
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~--i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKH--ISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHH
Confidence 34778888888888866653 23344444433332 244588888888888888887654
No 308
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=84.98 E-value=0.91 Score=25.01 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 009359 255 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD 291 (536)
Q Consensus 255 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d 291 (536)
|.||..++.+|+++. .+..++.+.+.++|
T Consensus 1 ~~vR~~aa~aLg~~~--------~~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLG--------DEEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcC--------CHhHHHHHHHHhcC
Confidence 356777777776653 23445555555554
No 309
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=84.95 E-value=28 Score=34.50 Aligned_cols=168 Identities=11% Similarity=0.030 Sum_probs=101.2
Q ss_pred HHHHHHHHHHH---HhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHh---hcChHHHHHhhhHHHHHhccCCCH
Q 009359 260 MVANQLYELCE---AVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQ 333 (536)
Q Consensus 260 ~~~~~l~~l~~---~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~---~~~~~~~~~~i~~~l~~l~~d~~~ 333 (536)
+++.+|-.+.+ .+........+...+++++++++-.|...+..++..+.- .++...+...++..+..+...++.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 33444444433 223333344688899999999776665555554444332 123344557777888887777777
Q ss_pred HHHHHHHHHHHHhhhhhCHH----HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch-hHH---------HhhHH
Q 009359 334 HVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLL---------SQSLL 399 (536)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~---------~~~i~ 399 (536)
..|....+.+..+.-....+ .....=+..++...+|+.+.|+.+++..+.++...-.. +.. ...+.
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 77777777776654333222 11223356677889999999999999999988642222 111 12355
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhh
Q 009359 400 PAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (536)
Q Consensus 400 ~~l~~~~~~~~~~~R~~a~~~l~~l~~~ 427 (536)
..+.+.++..++..-+..+..+..++..
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~ 595 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAAC 595 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhc
Confidence 5666666666665555556666666543
No 310
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.80 E-value=42 Score=33.00 Aligned_cols=133 Identities=10% Similarity=0.149 Sum_probs=72.0
Q ss_pred CHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH-HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc
Q 009359 351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (536)
Q Consensus 351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 429 (536)
+++.|.+.+++.+... ....++|...+..+..++. .-. +.=.+.|.+..++......+.+....+...--....
T Consensus 233 DpQ~fAEkLfk~~~~~--~er~E~klm~~~lisRliG---~HkL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP 307 (616)
T KOG2229|consen 233 DPQGFAEKLFKQLLAC--KERFEVKLMLMKLISRLIG---IHKLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVP 307 (616)
T ss_pred ChhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHhh---hhHHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCC
Confidence 3455666777666555 3334666666666555543 322 223567778888776655544433332222112233
Q ss_pred hhhHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCCh
Q 009359 430 VGFFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY 489 (536)
Q Consensus 430 ~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~ 489 (536)
++...+.+..+.-.+..|.+ ++|-...+.++.+++...+.. ..+.++..|.++-+..+.
T Consensus 308 ~d~iEpl~k~Ian~FVtD~~spEv~~vgiN~iREic~Rvpla-MteeLLqDLa~YK~sk~K 367 (616)
T KOG2229|consen 308 PDIIEPLLKTIANNFVTDENSPEVMAVGINAIREICERVPLA-MTEELLQDLASYKTSKKK 367 (616)
T ss_pred hHHhhHHHHHHHHHhcccCCCcceeehhhhHHHHHHhhcchh-hcHHHHHHHHHHhHHHHH
Confidence 33333333334444566654 567777888888888765432 346677777666544333
No 311
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.76 E-value=17 Score=28.34 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh-----hchhHHHHhhcc--C------CChHHHHHHHHHHH
Q 009359 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-----QHIVPQVLEMIN--N------PHYLYRMTILQAIS 500 (536)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~i~~~l~~~~~--d------~~~~~r~~~~~~l~ 500 (536)
...++..+.+.|+|+.+.|+..++..|..++...++.+.. ..++..+.++-. | +...||..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 4467788888899999999999999999988876554432 234444444322 2 35579999988888
Q ss_pred HHhh
Q 009359 501 LLAP 504 (536)
Q Consensus 501 ~l~~ 504 (536)
.+..
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 7653
No 312
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.19 E-value=13 Score=26.90 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHH
Q 009359 160 LKTELRTIYRQL-CQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCG 227 (536)
Q Consensus 160 ~~~~l~~~l~~l-l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 227 (536)
....++..+..+ .+.++..||...++++..+....+.. .-++.++..+.....|.+..+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 455666666665 45568899999999999998766542 235667888888888877777777777664
No 313
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=83.99 E-value=15 Score=34.58 Aligned_cols=97 Identities=9% Similarity=0.086 Sum_probs=62.8
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHh
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLE 482 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (536)
...+|.+-..+|..++.=. ...+.-+..+.+.+...++.|...|+..++.+..++|..+.. ..+...|..
T Consensus 22 T~enW~~IlDvCD~v~~~~------~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~a 95 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDP------DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRA 95 (462)
T ss_pred ccccHHHHHHHHHhhcCCC------cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHH
Confidence 3456776555555443211 123345666788888888888888888888888888876543 345555666
Q ss_pred hcc-CCChHHHHHHHHHHHHHhhhhChH
Q 009359 483 MIN-NPHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 483 ~~~-d~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
+++ .....|+...-..+..++..+..+
T Consensus 96 l~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 96 LIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 666 346677777777777776655443
No 314
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=83.02 E-value=71 Score=34.23 Aligned_cols=139 Identities=10% Similarity=0.046 Sum_probs=74.0
Q ss_pred cCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhh---cChhhHHh----hHHHH
Q 009359 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ---MREQDVVE----HFIPL 129 (536)
Q Consensus 57 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~---~~~~~~~~----~l~~~ 129 (536)
..+++.+|......+..+...-+ ......++|-+..++-++++.+|+-|...+..+... +..+.+.. .+...
T Consensus 92 Lr~~~~l~~~F~~~f~~~~~~~~-~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~ 170 (727)
T PF12726_consen 92 LRDDEELRELFDAIFSSLQSKKP-LKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSH 170 (727)
T ss_pred HcCcHHHHHHHHHHHHHHhccCC-ccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHH
Confidence 34455566655555554433111 111266777777888888999999999999998775 45444433 33334
Q ss_pred HHHHhcCcccchhh-HHHhhhhhhccCCChHHH---------HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh
Q 009359 130 VKRLAAGEWFTARV-SSCGLFHVAYPSAPEALK---------TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA 196 (536)
Q Consensus 130 l~~l~~~~~~~~r~-~a~~~l~~~~~~~~~~~~---------~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 196 (536)
+..+...+...... .--.-+..+...++.+.. ..+...+..-+.+.....-...++++..+.+..+.
T Consensus 171 l~~i~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~ 247 (727)
T PF12726_consen 171 LYRISPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGS 247 (727)
T ss_pred HHHhccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHH
Confidence 44441111111111 111222333344444311 11444555555555344556677888888877765
No 315
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.86 E-value=88 Score=35.19 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=69.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhHHHHhhh----chhHHHhhHHHHHHHhhcC------CChHH-------HHHHHHHH
Q 009359 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAED------RHWRV-------RLAIIEYI 421 (536)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~i~~~l~~~~~~------~~~~~-------R~~a~~~l 421 (536)
++..+.++..|+-.+||..|+..+=++...- |...+...+...+..++.. ++|.- -+..+..+
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lti 1077 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTI 1077 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhH
Confidence 3445555566788899999999988876543 4433333333444444331 22322 23566677
Q ss_pred HHHHhhhchhh-----------HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 422 PLLASQLGVGF-----------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 422 ~~l~~~~~~~~-----------~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
+.+++.+...+ ..+.++..+.++..|.++++..+|+.++.++...
T Consensus 1078 sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1078 SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 77776554322 2356778888888999999999999999887643
No 316
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=82.39 E-value=19 Score=27.28 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=43.8
Q ss_pred HHHHHhcCCCC----hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC--cchHHHHHHHHhHHHhhcccCchh
Q 009359 166 TIYRQLCQDDM----PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD--DQDSVRLLAVEGCGALGKLLEPQD 237 (536)
Q Consensus 166 ~~l~~ll~d~~----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~ 237 (536)
..+.+.+.|.+ ..-|..+..+++.+.+..++ +.....|.+...++. +.++.|..|++++..+...+++++
T Consensus 14 ~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~--~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 14 AVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGK--HISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHH
Confidence 34444444543 34588888999998886553 223344444443332 245689999999998888777643
No 317
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=82.30 E-value=63 Score=33.10 Aligned_cols=52 Identities=21% Similarity=0.129 Sum_probs=38.6
Q ss_pred chhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhh
Q 009359 429 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483 (536)
Q Consensus 429 ~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 483 (536)
+...-...++.++.+..-+.++.||..|..+|..++...+. ...++....++
T Consensus 464 ~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~---~~~vi~~Fa~F 515 (552)
T PF14222_consen 464 PSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPN---RQQVITGFARF 515 (552)
T ss_pred CCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHH
Confidence 33334577888999999999999999999999999987631 23455555554
No 318
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.84 E-value=79 Score=33.97 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh---hh--hhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhCh--
Q 009359 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-- 508 (536)
Q Consensus 436 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~--~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~-- 508 (536)
.++.-...++.+++-.+|..|+.++......+... .. .....|.+...+.+.|+.+-..|+.++..++...|.
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 35555667899999999999999997765544321 11 245566667778889999999999999999988772
Q ss_pred -HHHHHhHHHHHHhhcCCcc
Q 009359 509 -EITCSQLLPVVINASKDSE 527 (536)
Q Consensus 509 -~~~~~~~~~~l~~~l~d~~ 527 (536)
..+.+.++|.+..+++|..
T Consensus 883 ~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3468888999998888765
No 319
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.14 E-value=62 Score=32.27 Aligned_cols=246 Identities=11% Similarity=0.103 Sum_probs=115.0
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhCC--Cc
Q 009359 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW--RVRYMVANQLYELCEAVGP--EP 276 (536)
Q Consensus 201 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~--~vR~~~~~~l~~l~~~~~~--~~ 276 (536)
+.++..+.++++.++...+.+|+-.++..-.....++..+.+.|. ..+.+. ++-..+.-+|+.+. +|. ..
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi----~~std~pie~~~~asltLg~vF--vGtcngD 522 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPI----MFSTDSPIEVVFFASLTLGSVF--VGTCNGD 522 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhh----hcCCCCcHHHHHHHHHhhhheE--eeccCch
Confidence 456677888888888888888888887665544444444444444 333333 44444444444432 222 11
Q ss_pred cccchHHHHHHhcC--CCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH--
Q 009359 277 TRSDVVPAYVRLLR--DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-- 352 (536)
Q Consensus 277 ~~~~l~~~l~~ll~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-- 352 (536)
....++..|++--+ .....+|--|+ +++.+ +.|.....+.+...+... +. +- ....+.+...++..|.
T Consensus 523 ~ts~ilqtf~Er~~~e~~tqw~RFlaL-gLa~L--f~g~~d~~d~v~eti~aI-eg--~l--s~~~eiLv~~c~Y~GTGd 594 (881)
T COG5110 523 LTSLILQTFVERGKIESETQWFRFLAL-GLASL--FYGRKDQVDDVEETIMAI-EG--AL--SKHEEILVKGCQYVGTGD 594 (881)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHH-HHHHH--HccccchhHHHHHHHHHh-cc--hh--hhhHHHHHhhceecccCc
Confidence 22234444443322 22233443332 22222 223332222222222111 10 00 0111222222222221
Q ss_pred HHHHHhHHHHHHHhhCCC--CHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch
Q 009359 353 DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (536)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~ 430 (536)
-...+.++.+.-..-.|+ +++.-......++.-.-.+|.+.-.+.++..+...+--.+..+|...--+.+.+... .|
T Consensus 595 vl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~S-nP 673 (881)
T COG5110 595 VLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPS-NP 673 (881)
T ss_pred HHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCC-Cc
Confidence 112222222111111111 111111222233333334565555556666666666666778888776666655322 11
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 009359 431 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (536)
Q Consensus 431 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (536)
.-.++..+.+..+|.+-+|-..++-++|-+.
T Consensus 674 ---Qm~vfDtL~r~shd~dl~v~~ntIfamGLiG 704 (881)
T COG5110 674 ---QMNVFDTLERSSHDGDLNVIINTIFAMGLIG 704 (881)
T ss_pred ---chHHHHHHHHhccccchhHHHHHHHHhhccc
Confidence 2346677888889999888888888877654
No 320
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=81.11 E-value=15 Score=26.60 Aligned_cols=66 Identities=6% Similarity=0.012 Sum_probs=35.7
Q ss_pred HHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHhChhhhh--hchhHHHHhhccCCChHHHHHHHHHHH
Q 009359 435 DKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEMINNPHYLYRMTILQAIS 500 (536)
Q Consensus 435 ~~l~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~~r~~~~~~l~ 500 (536)
..++..+... ...++..||...+.|+.++....|..... ..++..+.....|++..+-..|.+++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3333344444 33446677777777777777765543211 344444555555555555555555543
No 321
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=80.90 E-value=43 Score=30.34 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=79.0
Q ss_pred HHHHHHHhhCCCC-----HHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHH-HHHHHHHhhhchhh
Q 009359 359 LLPIFLSLLKDEF-----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII-EYIPLLASQLGVGF 432 (536)
Q Consensus 359 l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~-~~l~~l~~~~~~~~ 432 (536)
.+|.+...+.++. +.++ .++..+..++..-+.+.+ -..+..+.+... +-+...+ ..+..+...+.++.
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~L----a~il~~ya~~~f-r~~~dfl~~v~~~l~~~f~P~~ 185 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNL----ARILSSYAKGRF-RDKDDFLSQVVSYLREAFFPDH 185 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccH----HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhCchh
Confidence 4566666666655 3444 455777887765554333 222222333322 3333222 23334444444432
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhh-hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009359 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
.-.++..+..++....+.+|..+...|..+........ ...+++..+.++++.+-+. .|++.+..+...
T Consensus 186 -~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~~ 255 (262)
T PF14225_consen 186 -EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWM---EALEVLDEIVTR 255 (262)
T ss_pred -HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHH---HHHHHHHHHHhh
Confidence 33466678889999999999999999999998765331 2355777777887776554 444444444433
No 322
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=80.85 E-value=28 Score=28.07 Aligned_cols=73 Identities=8% Similarity=-0.023 Sum_probs=45.7
Q ss_pred HHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHH-HHHhhcC---cchHHHHHHHHhHHHhhccc
Q 009359 163 ELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSI-FEELTQD---DQDSVRLLAVEGCGALGKLL 233 (536)
Q Consensus 163 ~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~-l~~~l~d---~~~~vr~~a~~~l~~l~~~~ 233 (536)
+.+..+.+-++ .+++.|...|+..|..+.+.+|... ....++.- +.+++.+ ....|+...++.+...+..+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 33444444444 5688888889999999988887632 22344543 5555543 23467777777777776655
Q ss_pred Cc
Q 009359 234 EP 235 (536)
Q Consensus 234 ~~ 235 (536)
+.
T Consensus 118 ~~ 119 (141)
T cd03565 118 RG 119 (141)
T ss_pred CC
Confidence 43
No 323
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=80.54 E-value=25 Score=27.37 Aligned_cols=72 Identities=8% Similarity=0.104 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhhc-CcchHHHHHHHHhHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 009359 199 LKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (536)
Q Consensus 199 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~ 272 (536)
+...++|.+.+.+. ...++.|.++.-.++.++...+= +...+.++..+.+....... ...+..++..+.+..
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 44567777777777 66667777777777777765542 22233333333333332222 244555555555443
No 324
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=80.41 E-value=1.2 Score=23.84 Aligned_cols=14 Identities=50% Similarity=0.750 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 009359 179 VRRSAATNLGKFAA 192 (536)
Q Consensus 179 vr~~a~~~l~~~~~ 192 (536)
||..|+.+|+.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 56777777777654
No 325
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=79.82 E-value=3.4 Score=24.42 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFA 191 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~ 191 (536)
.++.+.++++++++.++..++.+|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667777787888999999999988875
No 326
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.00 E-value=4.1 Score=24.07 Aligned_cols=28 Identities=25% Similarity=0.206 Sum_probs=18.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009359 242 ILPVIVNFSQDKSWRVRYMVANQLYELC 269 (536)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~~~~~l~~l~ 269 (536)
.++.+.+++++.++.++..++.+|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5566666666666777777777776654
No 327
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=77.75 E-value=14 Score=29.69 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=33.7
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCC
Q 009359 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS 332 (536)
Q Consensus 279 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~ 332 (536)
+.+...+..++.+++++|+..|++++-.+-. +.+ ..--+.+..++.|..
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~l-~pY~d~L~~Lldd~~ 64 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----PYL-TPYKDNLENLLDDKT 64 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHH-HhHHHHHHHHcCcch
Confidence 3567788899999999999999999988743 111 112245556666643
No 328
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=77.66 E-value=47 Score=28.91 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=92.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcC
Q 009359 172 CQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ 251 (536)
Q Consensus 172 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 251 (536)
+.=+.|.+|..+-..+...-. + ..+.....+..+.+++..+.|..|+..+...-.....+ -++.+...+.
T Consensus 21 ~Gv~~P~~R~lak~~~~~~~~----~-~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~ 90 (208)
T cd07064 21 YGIKTPERRALSKPFLKESKL----P-DKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELIT 90 (208)
T ss_pred CCCChHHHHHHHHHHHHHcCC----C-cHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHc
Confidence 344556666555433332111 0 01344455556777777788888888777654444332 2333444444
Q ss_pred C-CCHHHHHHHHHHH-HHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhcc
Q 009359 252 D-KSWRVRYMVANQL-YELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS 329 (536)
Q Consensus 252 d-~~~~vR~~~~~~l-~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~ 329 (536)
+ .+|.+-...+..+ +.+... .+.+.+.+.....+++.-+|.+|+-+.-.+.+.... +.++..+..++.
T Consensus 91 ~~~~Wd~vD~~~~~i~g~~~~~------~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~ 160 (208)
T cd07064 91 TKSWWDTVDSLAKVVGGILLAD------YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLG 160 (208)
T ss_pred CCchHHHHHHHHHHHhHHHHhC------ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCC
Confidence 3 4677665544333 333221 233467778888888888888887664444443222 445556667778
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 009359 330 DSSQHVRSALATVIMGMAPI 349 (536)
Q Consensus 330 d~~~~vr~~a~~~l~~l~~~ 349 (536)
|++.-|+.++...|-.++..
T Consensus 161 d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 161 SKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred ChHHHHHHHHHHHHHHHhcc
Confidence 88888999988888888765
No 329
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=77.28 E-value=31 Score=31.32 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=48.5
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcc------hHHHHHHHHhHHHhhcccCc--hhhhhhh
Q 009359 171 LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ------DSVRLLAVEGCGALGKLLEP--QDCVAHI 242 (536)
Q Consensus 171 ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~~l~~~~~~--~~~~~~l 242 (536)
++...+...|.+|+.+|.. +.-...++|++...+++.- -++-...+.....+...-.- +.+...+
T Consensus 206 l~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hql 278 (450)
T COG5095 206 LLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQL 278 (450)
T ss_pred HHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHH
Confidence 4445567788888877765 2223567777777665431 11111112222222221110 3345555
Q ss_pred HHHHHHhc------CCC----CHHHHHHHHHHHHHHHHHhCC
Q 009359 243 LPVIVNFS------QDK----SWRVRYMVANQLYELCEAVGP 274 (536)
Q Consensus 243 ~~~l~~~~------~d~----~~~vR~~~~~~l~~l~~~~~~ 274 (536)
+|.+..++ +++ ...+|..++..++-++..++.
T Consensus 279 mPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 279 MPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH
Confidence 55554432 222 224777777777777766654
No 330
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=77.23 E-value=99 Score=32.37 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=75.7
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHH
Q 009359 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (536)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (536)
...++..+..+..|+-..|+..+...+..+...-+.+ -..++..+++-+.|++..+-..|...|..+....+.= ..
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM--K~ 377 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM--KI 377 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc--ee
Confidence 4556777778888888899999988888876543322 2358888889999999888888877777776544321 11
Q ss_pred hhhHHHHHhccCC--CHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhh
Q 009359 319 HILPCVKELSSDS--SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 367 (536)
Q Consensus 319 ~i~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 367 (536)
.++..+..++-.+ +.+....++..|.++.-..........++.+.+.++
T Consensus 378 Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lF 428 (988)
T KOG2038|consen 378 VVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLF 428 (988)
T ss_pred ehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHH
Confidence 2223333333333 333444555666665443333334445555444443
No 331
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=76.93 E-value=59 Score=29.99 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=34.7
Q ss_pred hHHHHHHhcCCCcHH-HHHHHHHhHHHHHhhcChH--HH-HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhh
Q 009359 281 VVPAYVRLLRDNEAE-VRIAAAGKVTKICRILNPE--LA-IQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (536)
Q Consensus 281 l~~~l~~ll~d~~~~-vr~~a~~~l~~~~~~~~~~--~~-~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 348 (536)
++..+..++..+++. .-..|+.-++++.+..+.- .+ ....-..+..+++.++++||-.|++++..+..
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 556666665544433 2334555555555544321 00 11111233345677778888888777766543
No 332
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.53 E-value=80 Score=30.96 Aligned_cols=298 Identities=14% Similarity=0.138 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhh--cccCc
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT--VEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG--KLLEP 235 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~--~~~~~ 235 (536)
....++..+..+.....+..|...+..+-++.-. +.+......++|.+..++.++... .-|+..+=-++ ..+..
T Consensus 342 ~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~ 419 (791)
T KOG1222|consen 342 EQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKA 419 (791)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHH
Confidence 3455777788888888888888888877776522 112334455788888888765431 11111111110 00000
Q ss_pred hhhhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCC-cc--ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc
Q 009359 236 QDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPE-PT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (536)
Q Consensus 236 ~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~-~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~ 311 (536)
-.-....++.+.+ .+...+.+|-.+.+...-+++-.-.+. .. ...+--.....++..++- .++-+..++++-
T Consensus 420 MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHe 495 (791)
T KOG1222|consen 420 MFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHE 495 (791)
T ss_pred HHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhcc
Confidence 0001223333333 222233334443333333333221110 00 011112222233333321 122233344433
Q ss_pred ChH--HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhh----hCHHHH--HHhHHHHHHHhhCCC--CHHHHHHHHHh
Q 009359 312 NPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI----LGKDAT--IEQLLPIFLSLLKDE--FPDVRLNIISK 381 (536)
Q Consensus 312 ~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~----~~~~~~--~~~l~~~l~~~l~d~--~~~vr~~a~~~ 381 (536)
|+. .+.+.+-........|.+.. -.++++|.++.. ++.... ...++|.+...++.. ..++....+-.
T Consensus 496 g~tqn~FidyvgdLa~i~~nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~ 572 (791)
T KOG1222|consen 496 GATQNMFIDYVGDLAGIAKNDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIA 572 (791)
T ss_pred chHHHHHHHHHHHHHHHhhcCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHH
Confidence 321 12222222222233444443 455666666542 222222 246788888877632 12233333334
Q ss_pred hHHHHhhhchhHH--HhhHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhh-hchhhH-H-HHHHHHHHHHhcCcchHHHH
Q 009359 382 LDQVNQVIGIDLL--SQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQ-LGVGFF-D-DKLGALCMQWLKDKVYSIRD 454 (536)
Q Consensus 382 l~~l~~~~~~~~~--~~~i~~~l~~~~~~~--~~~~R~~a~~~l~~l~~~-~~~~~~-~-~~l~~~l~~~l~d~~~~Vr~ 454 (536)
+|.+........+ ...+++.+.++++.. +..+-...+..+-.+... ...+.. . ...-..+..+++|.+..||+
T Consensus 573 ~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRk 652 (791)
T KOG1222|consen 573 CGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRK 652 (791)
T ss_pred hhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHH
Confidence 4444322211111 134677777776643 233333334444333332 111111 1 22333477889999999999
Q ss_pred HHHHHHHHHHHH
Q 009359 455 AAANNVKRLAEE 466 (536)
Q Consensus 455 ~a~~~l~~l~~~ 466 (536)
.+-.++.-++.+
T Consensus 653 VCDn~LdIiae~ 664 (791)
T KOG1222|consen 653 VCDNALDIIAEH 664 (791)
T ss_pred HHHHHHHHHHHh
Confidence 988888766654
No 333
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.62 E-value=93 Score=30.79 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHH
Q 009359 432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 511 (536)
Q Consensus 432 ~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~ 511 (536)
-|.+.+++.+... -..-++|...+..|..++-... ...-.+.|.|+.+++....++......+........+++..
T Consensus 236 ~fAEkLfk~~~~~--~er~E~klm~~~lisRliG~Hk--L~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~d~i 311 (616)
T KOG2229|consen 236 GFAEKLFKQLLAC--KERFEVKLMLMKLISRLIGIHK--LFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPPDII 311 (616)
T ss_pred HHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHhhhhH--HHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCChHHh
Confidence 3444444444333 2234456555555555543211 12245667777777666666555544444444445555555
Q ss_pred HHhHHHHHHhhcCCccc
Q 009359 512 CSQLLPVVINASKDSES 528 (536)
Q Consensus 512 ~~~~~~~l~~~l~d~~~ 528 (536)
.+.+..+.-.++.|.++
T Consensus 312 Epl~k~Ian~FVtD~~s 328 (616)
T KOG2229|consen 312 EPLLKTIANNFVTDENS 328 (616)
T ss_pred hHHHHHHHHHhcccCCC
Confidence 55555555556666644
No 334
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=74.32 E-value=1e+02 Score=33.81 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=33.7
Q ss_pred CCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCC--HHHHHHHHHHHHHhhhh
Q 009359 290 RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS--QHVRSALATVIMGMAPI 349 (536)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~ 349 (536)
.|.+..-+..|+..+..+-...+. ..|...+.|+. |++|.+|+.+|...+..
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~s~--------~~L~rtl~der~FyrIR~~Aa~aLak~a~~ 706 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTASR--------SALTRTLEDERYFYRIRIAAAFALAKTANG 706 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcchhH--------HHHHHHHhhcchhhHHHHHHHHHHHHhhcc
Confidence 566666677777777666432211 33344444543 89999999999988754
No 335
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=74.12 E-value=27 Score=28.12 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCc
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD 214 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~ 214 (536)
..+++...+..++.+++++|+..|++|+-.+-.. . ...--+.+.++++|.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~----~-l~pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKDP----Y-LTPYKDNLENLLDDK 63 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----H-HHhHHHHHHHHcCcc
Confidence 3466788889999999999999999999987541 1 111224455566654
No 336
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=74.04 E-value=92 Score=34.14 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=43.9
Q ss_pred cCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc
Q 009359 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL 289 (536)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll 289 (536)
.|.+-.-+..|++.+..+....+. ..|...+.|. =+++|.+||.+|...+.....-.-.++++..+.+..
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~s~--------~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~f 724 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTASR--------SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKF 724 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcchhH--------HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHh
Confidence 566666677777777766543322 4455555554 589999999999988754311112346677776654
No 337
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.67 E-value=95 Score=30.48 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=75.6
Q ss_pred HHHHHHHhHHHhhcccCch--hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc
Q 009359 218 VRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE 293 (536)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~ 293 (536)
.-..|+..|..+++...-+ -....++..+.+++...+...-..+...|..+.-...+.. ....++.-+.+++--.+
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 3344556666666554432 2245577778888877776666677777776654332222 12357888888888889
Q ss_pred HHHHHHHHHhHHHHHhhc--ChHHHHHhhhHHHHHhccCCCH
Q 009359 294 AEVRIAAAGKVTKICRIL--NPELAIQHILPCVKELSSDSSQ 333 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~--~~~~~~~~i~~~l~~l~~d~~~ 333 (536)
++.|.+.+.-+-.++-.. .++.+...++|.+..++.+...
T Consensus 359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~ 400 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK 400 (791)
T ss_pred HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc
Confidence 999999988877665332 3445667788988888876543
No 338
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=72.84 E-value=14 Score=25.76 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=15.4
Q ss_pred chhHHHHhhcc-CCChHHHHHHHHHHHHHhhh
Q 009359 475 HIVPQVLEMIN-NPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 475 ~i~~~l~~~~~-d~~~~~r~~~~~~l~~l~~~ 505 (536)
.+++.+.++.+ .+.+.+|-++..+++-++..
T Consensus 28 ~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 28 DIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred CHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 44455444433 34455555555555555543
No 339
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=72.44 E-value=16 Score=36.07 Aligned_cols=128 Identities=15% Similarity=0.226 Sum_probs=86.6
Q ss_pred HHHHhhHHHHhhhch---hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHH---hhhchhhHHHHHHHHHHHHhcCcch
Q 009359 377 NIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA---SQLGVGFFDDKLGALCMQWLKDKVY 450 (536)
Q Consensus 377 ~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~ 450 (536)
+++.++..+.+.... ......+...+.+.+++++..+...+...+..+. ..+|..+....++..+.+.+..++.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 455555555543321 1112356677778888877666655554444332 2345566677888999999888888
Q ss_pred HHHHHHHHHHHHHHHHhChh----hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 451 SIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 451 ~Vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
..|....+.+..+.-....+ +....=+..+..+.+||.+.|+..+++.+.++.-
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 99999999998877655443 1223345667888999999999999999998754
No 340
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=72.43 E-value=90 Score=29.70 Aligned_cols=74 Identities=11% Similarity=0.002 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccC
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~ 234 (536)
-++.+..+.+.++..++.|...|+..++.+...++.. .-...+...+..++.+ ..+.|+......+...++.+.
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 3456667777788888888888888888888877752 2233445555566663 345566555555555555443
No 341
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.45 E-value=1.3e+02 Score=30.91 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 009359 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (536)
Q Consensus 398 i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (536)
++......+++..+.+-.++.+-+..+++....+++ ..++..+-+++.|.+...|.+....-+
T Consensus 461 VFtiYFrILkn~~~tll~~vlEGlakf~h~invef~-~dll~vlk~ll~d~~~~~re~l~cvqt 523 (704)
T KOG2153|consen 461 VFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFL-GDLLKVLKELLEDIELSYREALLCVQT 523 (704)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHh-hhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444455554444445555666666655555543 335556666777776666665443333
No 342
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=71.23 E-value=75 Score=28.20 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=49.1
Q ss_pred hHHHHHHHHhcCc-ccchhhHHHhhhhhhccCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009359 125 HFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFA 191 (536)
Q Consensus 125 ~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~ 191 (536)
++.|++..-..+. ...-|.++...|+.+.+.-+.+ ...+++|.+...++..+..-+..|...++.+.
T Consensus 124 ylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 124 YLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 4667775544443 5678999999999998887776 34678888888888887777777777776654
No 343
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=69.52 E-value=1.4e+02 Score=30.66 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=29.6
Q ss_pred HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhh
Q 009359 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (536)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (536)
....++.++.+..-+.++.||..|..+|..+....
T Consensus 468 ~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 468 PFKSLIELLCRGTVHVDPNIRESAAQALKRLARDK 502 (552)
T ss_pred cHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence 34678888888888899999999999999998766
No 344
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=67.63 E-value=97 Score=28.13 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcc
Q 009359 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (536)
Q Consensus 201 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 232 (536)
+.+-+.+.+.+..... -..+++.+..+...
T Consensus 63 ~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~ 92 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSST--YELTLRLLSRLTPL 92 (262)
T ss_pred hhHHHHHhCccCCCCc--HHHHHHHHHHHhcC
Confidence 4567777777765542 34556666666554
No 345
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=65.91 E-value=31 Score=23.98 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=25.8
Q ss_pred HHHHhhHHHHhh-hchhHHH-hhHHHHHHHhhc-CCChHHHHHHHHHHHHHHhh
Q 009359 377 NIISKLDQVNQV-IGIDLLS-QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQ 427 (536)
Q Consensus 377 ~a~~~l~~l~~~-~~~~~~~-~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~~ 427 (536)
+++-+++.++.. .|.+.+. ..+++.+.++.+ ++.+.+|-.+..+++.++..
T Consensus 6 aaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 6 AALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 344444444432 2322222 245555555554 44566666666666666543
No 346
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.76 E-value=1.3e+02 Score=29.90 Aligned_cols=73 Identities=12% Similarity=0.021 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcCc--chHHHHHHHHhHHHhhcccCc
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDD--QDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~ 235 (536)
+....+.+.+++.++.|...|+..|..+.+.+|... ...++++-+..+.... +-.||..++..+....+.++.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 566677888888888999999999999988888632 3455666666666554 568999999999888877765
No 347
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=64.24 E-value=2.5e+02 Score=31.66 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-------c-----CcchHHHHHHHHhHH
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-------Q-----DDQDSVRLLAVEGCG 227 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-------~-----d~~~~vr~~a~~~l~ 227 (536)
.-.+++..+..++...+..+|.++.-+||.+-..+.+ ...+.+-+.+...- . ...+.+|......+.
T Consensus 193 SaR~LFk~ivPlLks~~~~~r~AaVlaLG~~n~~v~~-~LleeL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl~ 271 (1120)
T PF14228_consen 193 SARELFKLIVPLLKSESSSFRDAAVLALGSINLNVYR-TLLEELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVLR 271 (1120)
T ss_pred CHHHHHHHHhhhhccCcHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH
Confidence 4567888888999999999999999999986544332 22223333322211 0 123558888888888
Q ss_pred HhhcccCch------hhhhhhHHHHHHh---cC----CCCH---HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 009359 228 ALGKLLEPQ------DCVAHILPVIVNF---SQ----DKSW---RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD 291 (536)
Q Consensus 228 ~l~~~~~~~------~~~~~l~~~l~~~---~~----d~~~---~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d 291 (536)
.+++.+.+. .....++.++... +. +.+| .+|...|..+..++..+.... . +.+
T Consensus 272 llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~--s-------e~f-- 340 (1120)
T PF14228_consen 272 LLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAK--S-------EWF-- 340 (1120)
T ss_pred HHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhch--h-------hcC--
Confidence 888776542 1122333443332 22 2245 466666666666654432111 1 111
Q ss_pred CcHHHHHHHHHhHHHHHhhcC
Q 009359 292 NEAEVRIAAAGKVTKICRILN 312 (536)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~ 312 (536)
..+.|..+...+..+|...+
T Consensus 341 -pfe~RkslF~l~~eWCGy~~ 360 (1120)
T PF14228_consen 341 -PFEARKSLFNLFEEWCGYSP 360 (1120)
T ss_pred -CHHHHHHHHHHHHHHhhhhc
Confidence 24678888888888886543
No 348
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=63.03 E-value=1.2e+02 Score=27.35 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=29.1
Q ss_pred HHHHhccCCC--HHHHHHHHHHHHHhhhh--hCHHHHHHhHHHHHHHhhCCCCHH
Q 009359 323 CVKELSSDSS--QHVRSALATVIMGMAPI--LGKDATIEQLLPIFLSLLKDEFPD 373 (536)
Q Consensus 323 ~l~~l~~d~~--~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~~~~ 373 (536)
.+..+++|++ ..+|.+++.++..++.. ...+...+.+...+...++.....
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence 3444455543 56888888888877643 234455555555555545544433
No 349
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=62.73 E-value=7.7 Score=33.97 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHh---------ChhhhhhchhHHHHhhccCC-ChHHHHHHHHHHHHHhhhhChHH----HHHhHHH
Q 009359 452 IRDAAANNVKRLAEEF---------GPDWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSEI----TCSQLLP 517 (536)
Q Consensus 452 Vr~~a~~~l~~l~~~~---------~~~~~~~~i~~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~~~~ 517 (536)
=|.-|++++++++-.- ++-...+++...|.+++.++ +...|+.++-.+..++..-..-- .....+.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 4778888888887432 11122377888888877664 78899999999999876533211 3455688
Q ss_pred HHHhhcCCccchhhhc
Q 009359 518 VVINASKDSESVAVTY 533 (536)
Q Consensus 518 ~l~~~l~d~~~~vr~~ 533 (536)
.|+.+++|.+.+.+..
T Consensus 220 ~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQV 235 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887776544
No 350
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.42 E-value=2.4e+02 Score=30.18 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=28.2
Q ss_pred cCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC
Q 009359 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 351 (536)
Q Consensus 289 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 351 (536)
+.+.+...|.+.+....+-.+.+.+-....+++..+.......++.-|..++..++.+....+
T Consensus 72 F~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip 134 (970)
T KOG1988|consen 72 FPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP 134 (970)
T ss_pred hccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc
Confidence 344444555555555554443333222222223333333334445555555666665554433
No 351
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=60.28 E-value=60 Score=27.51 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHHHHHHHH-hChhhh--hhchhHHHHhhccCCChHHHHHHHHHHHHHh
Q 009359 448 KVYSIRDAAANNVKRLAEE-FGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (536)
Q Consensus 448 ~~~~Vr~~a~~~l~~l~~~-~~~~~~--~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~ 503 (536)
.+..+...++.|+..+... .|-... ....+..+...+..++..+|..+++.++.+|
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4456667777777776542 222211 2567788888888889999999999888775
No 352
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=58.79 E-value=1.4e+02 Score=26.78 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhcc
Q 009359 435 DKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN 485 (536)
Q Consensus 435 ~~l~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 485 (536)
..++..++..+.++. +.+-.+.+.+|+.+++.=. .....+++.+..+-.
T Consensus 113 ~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP--~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 113 NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP--QFMSRILPALLSFNP 163 (239)
T ss_dssp HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhcCc
Confidence 346667777776655 5677778888888887622 234678888777644
No 353
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=58.64 E-value=1.4e+02 Score=26.77 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=31.8
Q ss_pred hhHHHHHHHhhcCCC--hHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCc
Q 009359 396 QSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK 448 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~--~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 448 (536)
..++..+...+.+.. ...-.+++.++..+++.-.. +...+++.+.++-.+.
T Consensus 113 ~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~--~~~~Il~~ll~~~~~~ 165 (239)
T PF11935_consen 113 NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ--FMSRILPALLSFNPNL 165 (239)
T ss_dssp HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG--GHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhcCccc
Confidence 456667777766654 55666777778777764332 4567778777765443
No 354
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.94 E-value=41 Score=28.94 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh--hchhHHHHhhccCCChHHHHHHHHHHHHHhhh---hChH
Q 009359 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSE 509 (536)
Q Consensus 435 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~---~~~~ 509 (536)
..++|.+...|.+.+..-|-.|-+-+..+....|..... .+++..|..-+...|..+...++.++..+... +|+.
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 446677777776666666666767777776665533111 22222233344556677777777777766543 3333
Q ss_pred H--HHHhHHHHHHhhc
Q 009359 510 I--TCSQLLPVVINAS 523 (536)
Q Consensus 510 ~--~~~~~~~~l~~~l 523 (536)
. |+.+++|.+-.+-
T Consensus 193 LVPfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 193 LVPFYRQLLPVLNTFK 208 (262)
T ss_pred hhhHHHHhhhhhhhhc
Confidence 3 5666776665443
No 355
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=56.92 E-value=99 Score=24.64 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=57.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhCC-Ccc-ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHH--HHhhhHH
Q 009359 248 NFSQDKSWRVRYMVANQLYELCEAVGP-EPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA--IQHILPC 323 (536)
Q Consensus 248 ~~~~d~~~~vR~~~~~~l~~l~~~~~~-~~~-~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~i~~~ 323 (536)
+.....+...+..+...|.+++----+ ... .-+++..|+..++.++.-....++.++..+|..-....+ ...-+|.
T Consensus 24 efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~pl 103 (173)
T KOG4646|consen 24 EFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPL 103 (173)
T ss_pred HHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCce
Confidence 333444566666666666665521000 000 125788888889988888888877777666642111111 1122455
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhh
Q 009359 324 VKELSSDSSQHVRSALATVIMGMA 347 (536)
Q Consensus 324 l~~l~~d~~~~vr~~a~~~l~~l~ 347 (536)
+....+++...+-..++-++..+.
T Consensus 104 ii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 104 IIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred EEeecCCChHHHHHHHHHHHHHhc
Confidence 555567777777777777776665
No 356
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=56.67 E-value=1.1e+02 Score=25.17 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=58.2
Q ss_pred HHHHHHHhhHHHHh--hhchhHHHhhHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhc
Q 009359 374 VRLNIISKLDQVNQ--VIGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLK 446 (536)
Q Consensus 374 vr~~a~~~l~~l~~--~~~~~~~~~~i~~~l~~~~~~~--~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~ 446 (536)
.-..++.++-.+.. .++.+.+...++..+..+.+.+ +..+-+.++..+..+...... ....+.-++.+...++
T Consensus 33 ~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq 112 (160)
T PF11841_consen 33 ILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQ 112 (160)
T ss_pred HHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHH
Confidence 33344555555544 2344445556666666665543 466777777777777653221 1112223566888888
Q ss_pred CcchHHHHHHHHHHHHHHHHhCh
Q 009359 447 DKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 447 d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
+.++.++..|+..+..+....++
T Consensus 113 ~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 113 VSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCh
Confidence 88899999998888888766544
No 357
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=55.55 E-value=2.1e+02 Score=28.05 Aligned_cols=143 Identities=19% Similarity=0.155 Sum_probs=79.8
Q ss_pred hHHHhhhcCc--chHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCc-ccchhhHHHhhhhhhccCCChH----HH
Q 009359 89 PPLETLCTVE--ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEA----LK 161 (536)
Q Consensus 89 ~~l~~l~~~~--~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~----~~ 161 (536)
.+|..+.+.+ +..||..+.+.|..+...-..+.+...-+..|..+.+.. ........+.++..+.++...- +.
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lva 262 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVA 262 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 3444555554 346799999888887665444443333233343333322 2233445666777776665442 22
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhc
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK 231 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 231 (536)
...++.++-.+.-.+|.+-+-|+-+|++++-+.+.+ .+...+-..++-+....++-.|..|+-+...++.
T Consensus 263 a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 263 AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 233444444556667888788888999987665432 2223333444445555566677777666655543
No 358
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=54.01 E-value=2.3e+02 Score=27.89 Aligned_cols=145 Identities=12% Similarity=0.052 Sum_probs=80.5
Q ss_pred HHHHHHhhcCcc--hHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCCc---c
Q 009359 204 MSIFEELTQDDQ--DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP---T 277 (536)
Q Consensus 204 ~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~~---~ 277 (536)
++.+..++..++ ..||..+...|..+...-..+.+...-+..+..+.+. +.......++..++.+.+.-.... .
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 445555666554 3578888888877654333333333333444444433 344555566666766654321100 0
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH----HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhh
Q 009359 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (536)
Q Consensus 278 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 348 (536)
....+..++-.++-.+|.+-..++-+++.+.-+-+.+ .+.+.+-..+..+....+.-.|.-++-++..++.
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 1122333333445566888888888888887655433 2223333444445556677788888888777764
No 359
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=53.52 E-value=2.9e+02 Score=29.24 Aligned_cols=89 Identities=13% Similarity=0.036 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHhh-cCcchHHHHHHHHhHHHhhcccCc
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH---LKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
.-+.++..+...+..+ .-|..++..|+.++..-++.. ....+++.+.+.+ .|.+..+-..|+.+|..+...++.
T Consensus 67 ~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 67 HDKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred cHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 3456777777777754 577888888888887654421 1234555555444 577788888888888888877764
Q ss_pred --hhhhhhhHHHHHHhc
Q 009359 236 --QDCVAHILPVIVNFS 250 (536)
Q Consensus 236 --~~~~~~l~~~l~~~~ 250 (536)
..+...++..+..++
T Consensus 145 ~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 145 SLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 334555555555544
No 360
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=53.36 E-value=2.7e+02 Score=28.66 Aligned_cols=143 Identities=13% Similarity=0.059 Sum_probs=83.0
Q ss_pred hccCCC--HHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhh--------CCCCHHHHHHHHHhhHHHHhhhchhH-HH
Q 009359 327 LSSDSS--QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIGIDL-LS 395 (536)
Q Consensus 327 l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~~~-~~ 395 (536)
.+.++. |.--...++++|.++..+....-...++..+..+| +|....|-....-..|+.-+.+...+ +.
T Consensus 489 q~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FL 568 (1053)
T COG5101 489 QLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFL 568 (1053)
T ss_pred HhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHH
Confidence 344444 45556788999999877765433333333333332 34433332222222233322222222 34
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhh----------HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 009359 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (536)
..++..+.+++......++..|+..+-.+++.+...+ |-..++..+-+.-.|-.+.-.....++.|-++.
T Consensus 569 kTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIs 648 (1053)
T COG5101 569 KTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVIS 648 (1053)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHh
Confidence 6667777778888888999999999988887665433 334455555555667677666667777777766
Q ss_pred HhCh
Q 009359 466 EFGP 469 (536)
Q Consensus 466 ~~~~ 469 (536)
..+.
T Consensus 649 e~p~ 652 (1053)
T COG5101 649 EVPK 652 (1053)
T ss_pred ccch
Confidence 5443
No 361
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=52.34 E-value=2.1e+02 Score=27.11 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=71.2
Q ss_pred HHHhhCCCCHHHHHHHHHhhHHHHhhh---chhH---HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH---
Q 009359 363 FLSLLKDEFPDVRLNIISKLDQVNQVI---GIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--- 433 (536)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~---~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~--- 433 (536)
+....+.++.+|-..|+.++..+...- ..+. .-+.++..+..++.++++-+|..++..++.+...-....+
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~ 248 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR 248 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence 456667777777777777776654321 1111 1255677888899999999999999999998743222111
Q ss_pred ---HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 434 ---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 434 ---~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
.+.-+..++.+|.|++..||-.|...+.-+..+
T Consensus 249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 245677889999999999999999999988766
No 362
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.14 E-value=2.1e+02 Score=26.92 Aligned_cols=145 Identities=15% Similarity=0.141 Sum_probs=82.1
Q ss_pred HHHHHHhhCCC-CHHHHHHHHHhhHHHHhhhchhHHH-----hhHHHHHHHhhc--CCChHHHHHHHHHHHHHHhhhch-
Q 009359 360 LPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLS-----QSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGV- 430 (536)
Q Consensus 360 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~-----~~i~~~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~- 430 (536)
+..++.++.|. +..+|..+-.++..+-..-|.+... +.-++.+..++. ..++.+-+.++-++..++-....
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 35566777773 4467766666666665555654332 223455555433 34567777777777777643322
Q ss_pred --hhHHHHHHHHHHHHh-cCcc-hHHHHHHHHHHHHHHHHhChh--hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 431 --GFFDDKLGALCMQWL-KDKV-YSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 431 --~~~~~~l~~~l~~~l-~d~~-~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
.++....-....+.+ ..|. ..|+..|+..+..+....... .....=+..|.......+...+..+-.++-.++-
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 112211222233333 3443 468999999999998763321 1113334455556666777888888888777654
No 363
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=51.62 E-value=1.3e+02 Score=25.37 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=33.1
Q ss_pred chHHHHHHHHhHHHhhcccC-chhh--hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009359 215 QDSVRLLAVEGCGALGKLLE-PQDC--VAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (536)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~-~~~~--~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~ 269 (536)
+......++.|+..+.+.-. -+.. .+..+..+...+.+++..+|..+++.|+.++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34566677777777665321 1111 2446667777777778888888888777665
No 364
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=51.58 E-value=97 Score=26.56 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=46.6
Q ss_pred chHHHhhhcCcchHHHHHHHHHHHHHHhhcChh-hHHhhHHHHHHHHhcCcccc-hhh-HHHhhhhhhccCCC-hHHHHH
Q 009359 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQ-DVVEHFIPLVKRLAAGEWFT-ARV-SSCGLFHVAYPSAP-EALKTE 163 (536)
Q Consensus 88 l~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~-~r~-~a~~~l~~~~~~~~-~~~~~~ 163 (536)
+..+.+...+.=..||..|..++..+...-.+. ...+. .+.+..+...+... ... .....+..+.+.+. +.+...
T Consensus 9 ~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~-~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~~y~~~ 87 (193)
T PF12612_consen 9 IGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPH-REELQDIFPSESEASLNWSSSSEYFPRLVKLLDLPEYRYS 87 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCc-HHHHHHHcccccccccccCCHHHHHHHHHHHhccHHHHHH
Confidence 333344444556689999999999888432120 01111 12222222211100 000 11111111111111 235555
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAA 192 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 192 (536)
++..+.-....-+..+.+.+..+|-.+..
T Consensus 88 ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 88 LLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 55555555555556666666666666654
No 365
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=51.50 E-value=3.1e+02 Score=29.05 Aligned_cols=148 Identities=17% Similarity=0.129 Sum_probs=88.9
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc--ccCCchHHHHHHHHHHhchhcccCCccchhcc
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 87 (536)
.|..|+..+.|.|..+...+-..+.... ..++ ...++..+.+ +...+.. +...|..+ ...+...+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~---~~~~-~~~l~~~l~~y~~~t~s~~----~~~il~~~-----~~P~~K~~ 71 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELL---NSDR-EPWLVNGLVDYYLSTNSQR----ALEILVGV-----QEPHDKHL 71 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHh---hccc-hHHHHHHHHHHHhhcCcHH----HHHHHHhc-----CCccHHHH
Confidence 4788999999999988777765544432 2111 1234444444 1222222 23333333 22344566
Q ss_pred chHHHhhhcCcchHHHHHHHHHHHHHHhhcChh---hHHhhHHH-HHHHHhcCcccchhhHHHhhhhhhccCCChH---H
Q 009359 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQ---DVVEHFIP-LVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---L 160 (536)
Q Consensus 88 l~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~-~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~ 160 (536)
+..+...+..+ .-|-.++..|+.++..-+.. .....+++ +++-+..|.+..+=..|..++..+.+.++.. +
T Consensus 72 ~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 72 FDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred HHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 66677666544 56788888899888866542 22223444 4444455666667778888888888877653 7
Q ss_pred HHHHHHHHHHhc
Q 009359 161 KTELRTIYRQLC 172 (536)
Q Consensus 161 ~~~l~~~l~~ll 172 (536)
...++.++..++
T Consensus 150 L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 150 LPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHH
Confidence 788888887776
No 366
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=51.41 E-value=1.4e+02 Score=25.53 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=19.1
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009359 240 AHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (536)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~ 269 (536)
..++..+.+..-.+-.+||..|..++..+.
T Consensus 6 ~~~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 6 QQIIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555677877777777776
No 367
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=51.20 E-value=1.4e+02 Score=24.76 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHhhhchhhH------------HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhh--hhch
Q 009359 411 WRVRLAIIEYIPLLASQLGVGFF------------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHI 476 (536)
Q Consensus 411 ~~~R~~a~~~l~~l~~~~~~~~~------------~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i 476 (536)
...|..+++.+..+.+..|..+. .+.+.+.+.+.+..+++.+=..++..+..+...++.... .+.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777666665544322 345677777777666688888899999888887765422 2556
Q ss_pred hHHHHh-hccCC--ChHHHHHHHHHHHHHhh
Q 009359 477 VPQVLE-MINNP--HYLYRMTILQAISLLAP 504 (536)
Q Consensus 477 ~~~l~~-~~~d~--~~~~r~~~~~~l~~l~~ 504 (536)
++.+.. ++..+ ....|..+++++..++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 666655 44433 35688999999999886
No 368
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.60 E-value=51 Score=28.36 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=43.4
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH--HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhh
Q 009359 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (536)
Q Consensus 280 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 348 (536)
.++|.|...+.+.+-.-|-.|-+++..+....+.. .+.+.++.-+...+...+.++...++++|..+.-
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~ 184 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVV 184 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 45677777776666666666777776666655533 2234455555556666777777777777776643
No 369
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=48.38 E-value=4.6e+02 Score=29.76 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=38.5
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh-HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhh
Q 009359 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (536)
Q Consensus 281 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 348 (536)
++...+..+-..++.|-.....++..+...-+. ..-...++....-.+.|++..+|..|++.|..+-.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 455545444445555655555555554432111 11123555666666678888888888888877654
No 370
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=46.34 E-value=1.2e+02 Score=26.43 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=17.0
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHh
Q 009359 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (536)
Q Consensus 280 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 309 (536)
.+++++..+++|.+.-|+.+.-.+|.+++.
T Consensus 154 ~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 154 EIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555
No 371
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=43.08 E-value=2.5e+02 Score=25.16 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcCcchHHHHHHHHhHHHhh
Q 009359 164 LRTIYRQLCQD-DMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (536)
Q Consensus 164 l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 230 (536)
+.|.+.....+ +..-.|-.++-.+|.+.+.-+.+. ...+++|.+.+.+...++.-+..|...+..+.
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 34444443333 345678888888888877655432 24568888888887777777777776666553
No 372
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.66 E-value=4.8e+02 Score=28.12 Aligned_cols=111 Identities=8% Similarity=-0.012 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 009359 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (536)
Q Consensus 203 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 282 (536)
..-.+.+.+....+.-...++..+..+-+..+-..+.+..+=-+...+.+.+-..|.++.+..+.-.+.+.+-.....++
T Consensus 25 ~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~l 104 (970)
T KOG1988|consen 25 VLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFL 104 (970)
T ss_pred HHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence 34444445554444444444444554444444333344444444555566666677776666654333322222222333
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh
Q 009359 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (536)
Q Consensus 283 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (536)
..+......+|+.-|..++..++.+...++.
T Consensus 105 rri~~V~hsnDp~aRAllL~ilg~~s~lipE 135 (970)
T KOG1988|consen 105 RRIFYVDHSNDPVARALLLRILGQLSALIPE 135 (970)
T ss_pred heeEEeecCCCHHHHHHHHHHHHHhhhhccc
Confidence 3333444556677777777777777666544
No 373
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.69 E-value=1.2e+02 Score=28.78 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=43.6
Q ss_pred HHHHhcCcccchhhHHHhhhhhhccCC--ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009359 130 VKRLAAGEWFTARVSSCGLFHVAYPSA--PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKF 190 (536)
Q Consensus 130 l~~l~~~~~~~~r~~a~~~l~~~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~ 190 (536)
+..+.++++...|..++..++-.+... +.....++.+.+..++.|+++.+|..++.+|++.
T Consensus 12 ~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 12 LIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 344556666677776666555544433 3446777888889999999999999999988873
No 374
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.62 E-value=1.8e+02 Score=27.62 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 009359 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 463 (536)
Q Consensus 398 i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (536)
....+..+.++++..-|..+...++......+ ...-.+.+.+++..++.|..+.||..++.+|++.
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 34455666677776667666665555444433 3333456667777778888888888888888763
No 375
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.02 E-value=2.8e+02 Score=24.96 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=28.7
Q ss_pred HHHHHHhcCCC--cHHHHHHHHHhHHHHHhhc--ChHHHHHhhhHHHHHhc
Q 009359 282 VPAYVRLLRDN--EAEVRIAAAGKVTKICRIL--NPELAIQHILPCVKELS 328 (536)
Q Consensus 282 ~~~l~~ll~d~--~~~vr~~a~~~l~~~~~~~--~~~~~~~~i~~~l~~l~ 328 (536)
...+..++.|+ +.-||.+|+.++..+...- ..+.+...+...+...+
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l 163 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFL 163 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35566666655 4678999999999887643 23344444444444433
No 376
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=38.87 E-value=1.6e+02 Score=22.15 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcCc
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDD 214 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~ 214 (536)
.++..+...+..-++.||..+.+.|.-+.+..+.+ .....+++.+..++.-.
T Consensus 11 ~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 11 LLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 34445555566777889999998888888887765 33445666666666543
No 377
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=37.04 E-value=3.6e+02 Score=25.32 Aligned_cols=60 Identities=7% Similarity=-0.024 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHHHHHHhhhchh---hHH-HHHHHHHHHH---hcCcchHHHHHHHHHHHHHHHHh
Q 009359 408 DRHWRVRLAIIEYIPLLASQLGVG---FFD-DKLGALCMQW---LKDKVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 408 ~~~~~~R~~a~~~l~~l~~~~~~~---~~~-~~l~~~l~~~---l~d~~~~Vr~~a~~~l~~l~~~~ 467 (536)
+.+.+++...+..|.......... +.. ..-++.+... -.+.+.-|+.-++-.||...+..
T Consensus 167 ~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 167 NSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred CCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhc
Confidence 456788888777776665432211 111 1234444443 23556678888888888877754
No 378
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=36.97 E-value=2.9e+02 Score=24.25 Aligned_cols=185 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-----ccCCchHHHHHHHHHHhchhcccCCccchhccc
Q 009359 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-----NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (536)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-----~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 88 (536)
+...|.|.|+.+|..|++.|...-..-.......+++..=.. +..|.|.++...|..++.+...+....
T Consensus 5 ~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~------ 78 (217)
T PF05997_consen 5 FAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEK------ 78 (217)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChH------
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCc-ccchhhHHHhhhhhhccC-CChHHHHHHHH
Q 009359 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPS-APEALKTELRT 166 (536)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~-~~~~~~~~l~~ 166 (536)
.++.-+..+...+..+ .+-|+++.-|+ .--+|......+..+... .+.+....+..
T Consensus 79 ----------------~~~~f~~~f~~tm~rE------W~~ID~~R~DKf~~LvR~~~~~~~~~l~~~~w~~~~v~~~~~ 136 (217)
T PF05997_consen 79 ----------------AALLFLKAFWETMRRE------WDGIDRLRMDKFLMLVRRFLRQSFRFLKKNGWDKELVEEFNE 136 (217)
T ss_pred ----------------HHHHHHHHHHHHHHHH------HcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q ss_pred HHHHhcCCCCh-----HHHHHHHHHHHHHHHHHh------------hhhhHHHHHHHHHHhhcCcchHHHHHHHHhH
Q 009359 167 IYRQLCQDDMP-----MVRRSAATNLGKFAATVE------------AAHLKSEIMSIFEELTQDDQDSVRLLAVEGC 226 (536)
Q Consensus 167 ~l~~ll~d~~~-----~vr~~a~~~l~~~~~~~~------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 226 (536)
.+.+..-+++. -..+.+=-.+.++.+..+ .+....-+-|.+.-....++..++....+.+
T Consensus 137 ~l~~~~l~~~~~~p~Gl~~H~~Di~ldEL~k~~~~~~~~~e~~~~~~~~~~~ll~PF~~~~~~s~~k~l~~~i~~~V 213 (217)
T PF05997_consen 137 ILSETPLNPNDQVPNGLRYHFADIFLDELEKVGGSESEDEEEENLPAEPLLLLLEPFVKLLAKSPDKVLRKRIKESV 213 (217)
T ss_pred HHHHccCCCcCCCchhHHHHHHHHHHHHHHHHhcccccchhcccCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
No 379
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=36.73 E-value=93 Score=21.66 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=30.5
Q ss_pred CCCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhh
Q 009359 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARAL 40 (536)
Q Consensus 5 ~~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~ 40 (536)
+.+=|-|.+++.-.+|..+..|..|++.|+.+....
T Consensus 35 ~~aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 35 EAAGYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CcCCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999998876544
No 380
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=36.03 E-value=1.3e+02 Score=22.65 Aligned_cols=37 Identities=8% Similarity=-0.085 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch
Q 009359 200 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 236 (536)
Q Consensus 200 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (536)
.+.++.++...+++-.+.||..+.+.+.-+.+.+++.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 3556666777777888888888888888888777653
No 381
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.83 E-value=9.3e+02 Score=29.74 Aligned_cols=199 Identities=14% Similarity=0.120 Sum_probs=99.9
Q ss_pred HHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhCCCcc---ccc-hHHHHHHhcC
Q 009359 218 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAVGPEPT---RSD-VVPAYVRLLR 290 (536)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d---~~~~vR~~~~~~l~~l~~~~~~~~~---~~~-l~~~l~~ll~ 290 (536)
-+..+++.+..+....+... .....|.+..++.. .....|..+..+...+...+..... ... +++.+..++.
T Consensus 896 ~k~~tl~~I~~~i~~~g~~~-v~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~l~ 974 (2382)
T KOG0890|consen 896 QKKKTLKGIKKLISFMGSKA-VSTRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPLLE 974 (2382)
T ss_pred HHHHHHHhHHHHHhhccHHH-HHHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhc
Confidence 35677788887777777532 33344444443333 2456788888888887776543221 122 5666666664
Q ss_pred CCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCC
Q 009359 291 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 370 (536)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 370 (536)
+.....+..-...+..- ..+.+ ....+.+- ++-+. + +..........+..++.+.-....++.+...+.++
T Consensus 975 ~~~~~~v~~i~~~i~~~----~~d~i-~~~~~~~~-~l~~~-p--~~~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~e 1045 (2382)
T KOG0890|consen 975 HIELNLVSSILDFISLD----NRDNI-QILKSDIP-ILPSI-P--ELGNLKAAIQEARGLLSEDDLDDQLRDFMKKLKHE 1045 (2382)
T ss_pred cccHHHHHHHHHHHHHh----hHHHH-Hhhhcccc-ccCCc-h--HHHHHHHHHHHHHhhccccchhhhhHHHHHHhHhh
Confidence 33332222221111110 00100 11111100 11111 1 12222223333333333223456677788888888
Q ss_pred CHHHHHHHHHhhHHHHhh------------hchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHh
Q 009359 371 FPDVRLNIISKLDQVNQV------------IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (536)
Q Consensus 371 ~~~vr~~a~~~l~~l~~~------------~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~ 426 (536)
+..||..+..-++..... .+.+.....++..+.....+...+.+..++++++.++.
T Consensus 1046 nl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~~~~~~akcLg~lga 1113 (2382)
T KOG0890|consen 1046 NLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQLEELCAKCLGELGA 1113 (2382)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888988888777776541 12222234444445444455556677888888888764
No 382
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=35.79 E-value=4.1e+02 Score=25.63 Aligned_cols=88 Identities=10% Similarity=0.136 Sum_probs=42.3
Q ss_pred HHHHHHHHHH--hcCcchHHHHHHHHHHHHHHHHhCh---hhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChH
Q 009359 435 DKLGALCMQW--LKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 435 ~~l~~~l~~~--l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
+.+.|.++++ +.|+.+.+|..+.+.+..+.+.... ....+.+.+.+..+.++.-...-....+.+.+++.. .++
T Consensus 255 ~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l-~p~ 333 (373)
T PF14911_consen 255 RLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAEL-DPQ 333 (373)
T ss_pred HHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-CHH
Confidence 3345555543 2455777888888888887776531 112244444444444433222333344444444432 111
Q ss_pred HHHHhHHHHHHhhcC
Q 009359 510 ITCSQLLPVVINASK 524 (536)
Q Consensus 510 ~~~~~~~~~l~~~l~ 524 (536)
+...++|.+..-+.
T Consensus 334 -lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 334 -LVISLIPTIRQSLK 347 (373)
T ss_pred -HHHHHHHHHHHHHH
Confidence 23444554444433
No 383
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=34.98 E-value=2.5e+02 Score=22.88 Aligned_cols=102 Identities=9% Similarity=0.106 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHhChhhh-----hhchhHHHHhh-ccCCChHHHHHHHHHHHHHhhhh
Q 009359 434 DDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVLEM-INNPHYLYRMTILQAISLLAPVM 506 (536)
Q Consensus 434 ~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~-----~~~i~~~l~~~-~~d~~~~~r~~~~~~l~~l~~~~ 506 (536)
...++..+.+.+.. ....|+...+++++-+..+++.+.. ....++.+... +.-.+.++....+..++.++..+
T Consensus 24 E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsfLK~lSlkl 103 (149)
T PF09758_consen 24 EKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISFLKTLSLKL 103 (149)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHHHHHHHhhc
Confidence 34566666666654 6778999999999999999876522 24555555554 22246778899999999998888
Q ss_pred ChHH---HH---Hh---HHHHHHhhcCCccchhhhccC
Q 009359 507 GSEI---TC---SQ---LLPVVINASKDSESVAVTYSH 535 (536)
Q Consensus 507 ~~~~---~~---~~---~~~~l~~~l~d~~~~vr~~a~ 535 (536)
.++- +. .. ++-.-.++.+.+++-||..+|
T Consensus 104 n~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR 141 (149)
T PF09758_consen 104 NKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVR 141 (149)
T ss_pred CCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHH
Confidence 7542 11 11 233446677888888887654
No 384
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=34.68 E-value=3.9e+02 Score=25.08 Aligned_cols=166 Identities=10% Similarity=0.061 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhh
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH 241 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (536)
..++..+.-+.+.+++. -......+..+....+++...+.+..++.+..+-++...-. ..-.
T Consensus 46 ~~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~-----------------l~L~ 107 (378)
T KOG2753|consen 46 LMIIEACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTAS-----------------LRLQ 107 (378)
T ss_pred HHHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcc-----------------cHHH
Confidence 34444555555666666 34455555555555554444443333333333332221100 1112
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHH--HHHHHHhHHHHHhhcCh-HHHHH
Q 009359 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV--RIAAAGKVTKICRILNP-ELAIQ 318 (536)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~v--r~~a~~~l~~~~~~~~~-~~~~~ 318 (536)
++..+.+...++.+ +|..+...+-.++...+--.+...=+..+...+++-+..+ .+.-..++......... +.-.+
T Consensus 108 vLsnLfn~~d~~~~-aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~k 186 (378)
T KOG2753|consen 108 VLSNLFNGVDKPTP-ARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSK 186 (378)
T ss_pred HHHHHHhccCCCch-HHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHH
Confidence 23333344444555 8888888888887665532222222333334444332222 23344444444433221 11112
Q ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHh
Q 009359 319 HILPCVKELSSDSSQHVRSALATVIMGM 346 (536)
Q Consensus 319 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l 346 (536)
.+...+-...+|.-...|..|.+++...
T Consensus 187 vmt~lLgtyt~dnas~AredA~rcV~~a 214 (378)
T KOG2753|consen 187 VMTELLGTYTEDNASEAREDAMRCVVEA 214 (378)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 2223333333333344555555555544
No 385
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=34.20 E-value=4.5e+02 Score=25.63 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=39.4
Q ss_pred hhhHHHHHhccC-CCHHHHHHHHHHHHHhhhhhCHHHH-HH--hHHHHHHHhhCCCCHHHHHHHHHhhHHHH
Q 009359 319 HILPCVKELSSD-SSQHVRSALATVIMGMAPILGKDAT-IE--QLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (536)
Q Consensus 319 ~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~-~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (536)
.++..|..+++. .++.+-..|+.-|+.+....+.... .. .--..++++++.++++||..|+.+...++
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 344444444443 3366666677777777665543211 11 11245667788888888888887776654
No 386
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=34.11 E-value=1.4e+02 Score=22.54 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=23.3
Q ss_pred HHHHHHH--hcCcchHHHHHHHHHHHHHHHHh
Q 009359 438 GALCMQW--LKDKVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 438 ~~~l~~~--l~d~~~~Vr~~a~~~l~~l~~~~ 467 (536)
+|.++.. .+|.+|.+|+.|+.++..++...
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 5555554 46788999999999999998753
No 387
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=32.94 E-value=4.4e+02 Score=25.06 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=25.2
Q ss_pred CCCChHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC
Q 009359 173 QDDMPMVRR--SAATNLGKFAATVEAAHLKSEIMSIFEELTQD 213 (536)
Q Consensus 173 ~d~~~~vr~--~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d 213 (536)
.|.+.-.|. .+.+.+..+.+..|.....+.+-|.+.+++.+
T Consensus 71 ~~~~tlfR~NSlaTK~m~~y~k~~G~~YL~~~L~p~I~~Ii~~ 113 (333)
T cd05135 71 TDPNTLFRSNSLASKSMEQFMKVVGMPHLHEPLLPEISKPFEE 113 (333)
T ss_pred CCHhHHhhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 444444554 35567777777766655666666777776654
No 388
>PF14961 BROMI: Broad-minded protein
Probab=32.09 E-value=6.2e+02 Score=28.67 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=51.6
Q ss_pred HHHHHhcCcccchhhHHHhhhhhhc--cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHh
Q 009359 129 LVKRLAAGEWFTARVSSCGLFHVAY--PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (536)
Q Consensus 129 ~l~~l~~~~~~~~r~~a~~~l~~~~--~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~ 195 (536)
++.++-.++-..+|..|.+.+..+. ..++.+.++.+...|...+.|+|+.+...+++.........+
T Consensus 166 i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 166 IADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 3444444545578999998887763 345667899999999999999999999999988888776543
No 389
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=31.85 E-value=2.7e+02 Score=22.33 Aligned_cols=98 Identities=6% Similarity=-0.072 Sum_probs=56.9
Q ss_pred cCCCcHHHHHHHHHhHHHHHhhcChHH--HHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH-HHHH-HhHHHHHH
Q 009359 289 LRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DATI-EQLLPIFL 364 (536)
Q Consensus 289 l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~-~~l~~~l~ 364 (536)
-.-.+.+.++....++..|+-.--+-. ..-.++..+...++.++.....-++-.+..++..-.. ++.. ..=+|.++
T Consensus 26 q~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii 105 (173)
T KOG4646|consen 26 QTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLII 105 (173)
T ss_pred HHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEE
Confidence 344556677777777777653111110 1123456666667778877777776666666543221 2222 22357777
Q ss_pred HhhCCCCHHHHHHHHHhhHHHH
Q 009359 365 SLLKDEFPDVRLNIISKLDQVN 386 (536)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~ 386 (536)
..+.++...+-..++..+..++
T Consensus 106 ~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 106 FVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred eecCCChHHHHHHHHHHHHHhc
Confidence 7788888877777776665554
No 390
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.43 E-value=9.1e+02 Score=28.33 Aligned_cols=146 Identities=10% Similarity=0.026 Sum_probs=78.2
Q ss_pred ccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHH------hhHHHH
Q 009359 56 NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVV------EHFIPL 129 (536)
Q Consensus 56 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~------~~l~~~ 129 (536)
-.+.+++||..+.+|...-+ +.-|..++.++..-..+.+..+-+.+.+.+..+........+. ...++-
T Consensus 1046 ~~s~s~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~c 1120 (1514)
T KOG0929|consen 1046 KRSSSAEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKC 1120 (1514)
T ss_pred hccCcchhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHH
Confidence 34567788888888877221 2347788888888878888888888887777665544332221 112233
Q ss_pred HHHHhcCc-cc-----ch---hhHHHhhhhh-hccCCC------hH----HHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009359 130 VKRLAAGE-WF-----TA---RVSSCGLFHV-AYPSAP------EA----LKTELRTIYRQLCQDDMPMVRRSAATNLGK 189 (536)
Q Consensus 130 l~~l~~~~-~~-----~~---r~~a~~~l~~-~~~~~~------~~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~ 189 (536)
+....++. .+ .+ |..+-..-.. ..+... .+ .+..++-.+...+.+....||..+++.+-.
T Consensus 1121 l~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~ 1200 (1514)
T KOG0929|consen 1121 LEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFD 1200 (1514)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHH
Confidence 33333221 11 11 1111111111 001111 01 222333344445568889999999999998
Q ss_pred HHHHHhh---hhhHHHHHHH
Q 009359 190 FAATVEA---AHLKSEIMSI 206 (536)
Q Consensus 190 ~~~~~~~---~~~~~~l~~~ 206 (536)
+....|. ..+++.++..
T Consensus 1201 il~~~g~~F~~~~We~v~~~ 1220 (1514)
T KOG0929|consen 1201 ILKEHGDDFSKEFWEDVFRI 1220 (1514)
T ss_pred HHHhhhhhccHHHHHHHHHh
Confidence 8877665 3444444443
No 391
>PRK04330 hypothetical protein; Provisional
Probab=31.30 E-value=2.1e+02 Score=20.79 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHhC-hhhhhhchhHHHHhhccCCCh--HHHHHHHHHHHHHh
Q 009359 435 DKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFG-PDWAMQHIVPQVLEMINNPHY--LYRMTILQAISLLA 503 (536)
Q Consensus 435 ~~l~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~~~~d~~~--~~r~~~~~~l~~l~ 503 (536)
+..+..+.+..+|.. .+||.+|-++...+...-. +.......+..|.+..+|||. ..|......++.+-
T Consensus 12 k~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~~~vRaA~AIs~LdeIs~DPNmP~h~RT~IW~ivS~LE 85 (88)
T PRK04330 12 KQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEESPGVRAATAISILDEISNDPNMPLHTRTLIWNIVSQLE 85 (88)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHh
Confidence 334445556666654 3688888888777765422 112235677778888888874 46776666666553
No 392
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.52 E-value=4.6e+02 Score=24.58 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFA 191 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~ 191 (536)
+.+.+..+++.-++..|..|.+++..+.
T Consensus 150 fleyLgkl~Q~i~~lTrlfav~cl~~l~ 177 (432)
T COG5231 150 FLEYLGKLSQLIDFLTRLFAVSCLSNLE 177 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3345555666666778888888887765
No 393
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.44 E-value=1.2e+02 Score=23.33 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
+..-.++.+.+-+.|+++.|+..|++.|...+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3444567777888888888888888888777754
No 394
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=30.41 E-value=5.2e+02 Score=28.06 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=37.0
Q ss_pred hhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC----C--CCHHHHHHHHHhhHHHHhhhc
Q 009359 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK----D--EFPDVRLNIISKLDQVNQVIG 390 (536)
Q Consensus 320 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----d--~~~~vr~~a~~~l~~l~~~~~ 390 (536)
++..+.......++++....++.|+.++ +|.+...+.++..+...++ | ...+- ...+.++..+...+.
T Consensus 230 lL~~l~s~~~r~~~~i~~~l~RiLP~Lt--~G~~e~m~~Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~ 303 (802)
T PF13764_consen 230 LLERLNSPFVRSNPQILQALARILPFLT--YGNEEKMDALVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIP 303 (802)
T ss_pred HHHHhcCccccCCHHHHHHHHHHhhHHh--cCCHHHHHHHHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCC
Confidence 3333333334456778778888887775 4555555666666666553 1 11111 233666666665553
No 395
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.40 E-value=2.2e+02 Score=20.61 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=35.2
Q ss_pred HhHHHHHHHhhCCCC--HHHHHHHHHhhHHHHhhh-chhHHHhhHHHHHHHhhcCCC--hHHHHHHHHHHHH
Q 009359 357 EQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVELAEDRH--WRVRLAIIEYIPL 423 (536)
Q Consensus 357 ~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~-~~~~~~~~i~~~l~~~~~~~~--~~~R~~a~~~l~~ 423 (536)
...+..+....+|.. ..+|.+|-.+...+..-- .+..-....+..|.++.+|++ ...|......++.
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vis~ 87 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLIWNVISQ 87 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 344455555555542 367777666665554311 111112345666777778877 3455555555544
No 396
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.65 E-value=6e+02 Score=25.33 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhH
Q 009359 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478 (536)
Q Consensus 399 ~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~ 478 (536)
...+.++..+....+--..+..|..++.....+ .......++..+..+...||..++..+..+.-... .+...++.
T Consensus 9 ~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee--~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~--~FR~lii~ 84 (661)
T KOG2374|consen 9 IGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE--VRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSK--LFRTLIIE 84 (661)
T ss_pred HHHHHHHhhcCCcccChHHHHHHHHHHhccHHH--HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhH--HHHHHHHh
Confidence 333444444444444444444454444433322 23334445566666667777777777766654321 12233333
Q ss_pred HHHhhc-----cCC----------ChHHHHHHHHHHHHHhhhhChH
Q 009359 479 QVLEMI-----NNP----------HYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 479 ~l~~~~-----~d~----------~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
.+.+++ ++| -...|..++.++..+-..+|..
T Consensus 85 n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~ 130 (661)
T KOG2374|consen 85 NLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFH 130 (661)
T ss_pred CHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333221 122 2358899999999988887754
No 397
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=28.62 E-value=5e+02 Score=24.43 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=52.5
Q ss_pred HHHHHHhhc--CCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHH--HHHHHHHHHHHHHhChhhhhh
Q 009359 399 LPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR--DAAANNVKRLAEEFGPDWAMQ 474 (536)
Q Consensus 399 ~~~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr--~~a~~~l~~l~~~~~~~~~~~ 474 (536)
+..|..+.+ |.....|......+..++...+.-.+..--+..+-..+.+-...|. .....++.........-....
T Consensus 106 L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~ 185 (378)
T KOG2753|consen 106 LQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESS 185 (378)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 334444433 3334477777777666665444321111112234455555444442 234444444444332211223
Q ss_pred chhHHHHhhccCCC-hHHHHHHHHHHHHHhhhhChHHHHHhH
Q 009359 475 HIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEITCSQL 515 (536)
Q Consensus 475 ~i~~~l~~~~~d~~-~~~r~~~~~~l~~l~~~~~~~~~~~~~ 515 (536)
+++-.+...++..| ...|..|.+|+-.... -++.|+..++
T Consensus 186 kvmt~lLgtyt~dnas~AredA~rcV~~av~-dP~~F~fD~L 226 (378)
T KOG2753|consen 186 KVMTELLGTYTEDNASEAREDAMRCVVEAVK-DPKIFLFDHL 226 (378)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHc-CCceeccchh
Confidence 44444444444333 5566666666666442 2334444433
No 398
>COG2733 Predicted membrane protein [Function unknown]
Probab=28.52 E-value=5.5e+02 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=17.4
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhh
Q 009359 324 VKELSSDSSQHVRSALATVIMGMAPIL 350 (536)
Q Consensus 324 l~~l~~d~~~~vr~~a~~~l~~l~~~~ 350 (536)
+..-.++++..+|.-...++..+++.+
T Consensus 306 l~~D~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 306 LKEDYESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred HHhcccCchhHHHHHHHHHHHHHHHHH
Confidence 334456677777777777777766543
No 399
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.34 E-value=1.3e+02 Score=23.28 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=25.9
Q ss_pred HHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHh
Q 009359 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (536)
+..-.++.+.+.+.|++++|...|+..|...+.
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 344556778888999999998888888888775
No 400
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=28.12 E-value=8.9e+02 Score=27.15 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHH-HHHHHHHHhChhhhhhchhHHHHhhcc------CCChHHHHHHHHHHHHHhh-hh
Q 009359 435 DKLGALCMQWLKDKVYSIRDAAAN-NVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYLYRMTILQAISLLAP-VM 506 (536)
Q Consensus 435 ~~l~~~l~~~l~d~~~~Vr~~a~~-~l~~l~~~~~~~~~~~~i~~~l~~~~~------d~~~~~r~~~~~~l~~l~~-~~ 506 (536)
+..+..+++.+.|........|.. .+..+...+.... ..+....+.+ +-+.-.|...+..+..+.. -.
T Consensus 418 ~n~~h~ll~~Le~~~r~l~~~a~~~~l~~L~~~~k~~~----~v~~~~~lln~~h~~~~fd~~T~~~~v~~L~all~he~ 493 (1129)
T KOG1926|consen 418 DNFLHTLLKPLEDQDRVLVKIATFSFLQKLSNQFKQDS----TVQFADLLLNQSHSSTNFDRFTRTKTVQVLKALLAHEQ 493 (1129)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCc----chHHHHHHhcCcccccccccchhhhHHHHHHHHHhhhh
Confidence 445566777777776554444444 6777776654321 1222222222 1244556666666666654 23
Q ss_pred ChHHHHHhHHHHHHhhcCCc
Q 009359 507 GSEITCSQLLPVVINASKDS 526 (536)
Q Consensus 507 ~~~~~~~~~~~~l~~~l~d~ 526 (536)
|...+.+.++..++.+..++
T Consensus 494 ~~t~~~Qlll~~~i~~~~~~ 513 (1129)
T KOG1926|consen 494 GATALQQLLLNYFIDLLKSP 513 (1129)
T ss_pred hHHHHHHHHHHHHHhcccch
Confidence 33345666777777777665
No 401
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=28.03 E-value=4.6e+02 Score=23.77 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 009359 333 QHVRSALATVIMGMAPI 349 (536)
Q Consensus 333 ~~vr~~a~~~l~~l~~~ 349 (536)
..+|...+..+|.+.+.
T Consensus 110 E~LRLtsLGVIgaLvK~ 126 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKT 126 (262)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred chhhHhHHHHHHHHHcC
Confidence 55666666666666653
No 402
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=27.74 E-value=8.1e+02 Score=26.52 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhcC---c--chHHHHHHHHhHHHhh
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD---D--QDSVRLLAVEGCGALG 230 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~d---~--~~~vr~~a~~~l~~l~ 230 (536)
..+.++..+..++++.+++++..+++++..|+...+.. .-.+.+++.+.++... + -..+|.+.+.+|..+.
T Consensus 94 F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v 173 (819)
T KOG1877|consen 94 FVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVV 173 (819)
T ss_pred HHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHH
Confidence 44566777777888888888888888888888543321 1124455555555432 1 2356666677666554
Q ss_pred c
Q 009359 231 K 231 (536)
Q Consensus 231 ~ 231 (536)
.
T Consensus 174 ~ 174 (819)
T KOG1877|consen 174 W 174 (819)
T ss_pred H
Confidence 3
No 403
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=26.72 E-value=5.5e+02 Score=24.29 Aligned_cols=199 Identities=8% Similarity=0.044 Sum_probs=0.0
Q ss_pred chhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhh-HHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHH
Q 009359 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD-VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALK 161 (536)
Q Consensus 83 ~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~ 161 (536)
+...++..+....+.++...-......|..+...+.... +......+++.+.++.
T Consensus 2 ~~~~l~~~W~~~~~~n~~~~~~~~~~~L~~~l~~ls~~~~~~~~g~~l~~~iL~~~------------------------ 57 (330)
T PF11707_consen 2 FLSELLQIWSYAAQVNNHSLLSLVSSVLALLLKKLSSDLSFQSYGLELIRSILQNH------------------------ 57 (330)
T ss_pred CHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH------------------------
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHhhcCcch---------HHHHHH
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----------AHLKSEIMSIFEELTQDDQD---------SVRLLA 222 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----------~~~~~~l~~~l~~~l~d~~~---------~vr~~a 222 (536)
+..+...++...+.+...+++.|.+++...++ +.-.+.+-..+..--.+.+. .+|...
T Consensus 58 ---~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f 134 (330)
T PF11707_consen 58 ---LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF 134 (330)
T ss_pred ---HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Q ss_pred HHhHHHhhcccCchhhhhhh-----HHHHHHhcCCCCHHHHHHHHHHHHH-------HHHHhCCCccccchHHHHHHhcC
Q 009359 223 VEGCGALGKLLEPQDCVAHI-----LPVIVNFSQDKSWRVRYMVANQLYE-------LCEAVGPEPTRSDVVPAYVRLLR 290 (536)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~l-----~~~l~~~~~d~~~~vR~~~~~~l~~-------l~~~~~~~~~~~~l~~~l~~ll~ 290 (536)
+..+-.+....+......-+ +..+.+.+..++..+-..+...+.. +.+......+.+..+..+.++..
T Consensus 135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Q ss_pred CCcH----HHHHHHHHhHHHHH
Q 009359 291 DNEA----EVRIAAAGKVTKIC 308 (536)
Q Consensus 291 d~~~----~vr~~a~~~l~~~~ 308 (536)
..++ .++..+-..+..++
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALC 236 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHh
No 404
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=1.1e+03 Score=27.71 Aligned_cols=215 Identities=13% Similarity=0.146 Sum_probs=112.6
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch------hhhhhhHH
Q 009359 171 LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ------DCVAHILP 244 (536)
Q Consensus 171 ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~ 244 (536)
.-.+.+..||...++++..-.+.. +..++..+.....|.+..+-..+.+.+..+.+...+. ......++
T Consensus 1045 m~~s~s~~Irelv~rC~~~nikSG-----Wk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1045 MKRSSSAEIRELVVRCISSNIKSG-----WKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVK 1119 (1514)
T ss_pred hhccCcchhHHHHHhhhhhhhhhh-----hhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHH
Confidence 335667889999998888444332 3456666666777777777777777777444322221 12233444
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHHhCC---------------CccccchHHHHHH---hcCCCcHHHHHHHHHhHH
Q 009359 245 VIVNFSQD-KSWRVRYMVANQLYELCEAVGP---------------EPTRSDVVPAYVR---LLRDNEAEVRIAAAGKVT 305 (536)
Q Consensus 245 ~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~---------------~~~~~~l~~~l~~---ll~d~~~~vr~~a~~~l~ 305 (536)
.+.+...+ ..+..-..+++.+-..+..+.+ +......+|.+.. ...+...+||..+++.+-
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHH
Confidence 44443321 1222222222222222211111 1112234454443 345788999999999999
Q ss_pred HHHhhcChH---HHHHhhh----HHHHHhccCCC-----HHHHHHHHHHHHHhhhhhCH-----HHHHHhHHHHHHHhhC
Q 009359 306 KICRILNPE---LAIQHIL----PCVKELSSDSS-----QHVRSALATVIMGMAPILGK-----DATIEQLLPIFLSLLK 368 (536)
Q Consensus 306 ~~~~~~~~~---~~~~~i~----~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~ 368 (536)
.+....|.+ .+.+.++ |.+..+-.+.+ .........++..++..+.. ....+.++-.+..+.+
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~ 1279 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIK 1279 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888877643 2333333 33322222211 12334444444444443321 1223445555566667
Q ss_pred CCCHHHHHHHHHhhHHHHhhhc
Q 009359 369 DEFPDVRLNIISKLDQVNQVIG 390 (536)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~ 390 (536)
.++..+-.....|+..+....|
T Consensus 1280 ~~n~~la~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1280 QDNQQLARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred CcchhhHHhHHHHHHHHHHhcc
Confidence 7777777777888888776554
No 405
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=25.63 E-value=3.8e+02 Score=21.98 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc
Q 009359 101 CVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAA 135 (536)
Q Consensus 101 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 135 (536)
.+-..+..++..++-.+++..+.+....++.....
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~ 70 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATS 70 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcc
Confidence 45566788888888888888888877777766654
No 406
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.67 E-value=9e+02 Score=26.06 Aligned_cols=112 Identities=7% Similarity=0.010 Sum_probs=63.1
Q ss_pred hhHHHHHHHHhcCcccchhhHHHhhhhhhccC---CChH-----HHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHH
Q 009359 124 EHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS---APEA-----LKTELRTIYRQL-CQDDMPMVRRSAATNLGKFAATV 194 (536)
Q Consensus 124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~---~~~~-----~~~~l~~~l~~l-l~d~~~~vr~~a~~~l~~~~~~~ 194 (536)
..++|-+..+.-++++..|.-|...+..+... +..+ +.+.+...+..+ -+..++..-..--..+..+.+.+
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~l 198 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLL 198 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHc
Confidence 55678777788888888888888888887654 3332 334455555555 11122322222344455555555
Q ss_pred hhhhhHHH--------HHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc
Q 009359 195 EAAHLKSE--------IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 195 ~~~~~~~~--------l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
+.+.+... +...+.+-+.+.....-...++++..+.+..+.
T Consensus 199 d~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~ 247 (727)
T PF12726_consen 199 DKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGS 247 (727)
T ss_pred cHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHH
Confidence 55433221 444555555555344455667777777766654
No 407
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=24.55 E-value=4.8e+02 Score=22.88 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=43.8
Q ss_pred hhHHHHHHHhhcCCC-hHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q 009359 396 QSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~-~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (536)
+.+++......++.+ |.-|.+.+.++... ........+++++-..+.|+..-||.+.-++|.++.++.
T Consensus 117 ~~li~~~~a~~~~~~~w~rraaiv~~l~~~----k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~ 185 (222)
T COG4912 117 PDLIEEWAADAEEDNRWERRAAIVHQLVYK----KKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHS 185 (222)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHh----cCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhc
Confidence 455555544444444 44444444444332 222233468888999999999999999999999998843
No 408
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=24.53 E-value=1e+03 Score=26.51 Aligned_cols=62 Identities=11% Similarity=0.000 Sum_probs=37.6
Q ss_pred CcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHH-----hhccCCChHHHHHHHHHHHHHhhhhChH
Q 009359 447 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL-----EMINNPHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 447 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~-----~~~~d~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
+...+||...+..+..+..... .+..++|+..+. ...-|.+..+|..+.+++.+++..+...
T Consensus 441 ~s~~~Vrik~~~~l~~~~l~nr-~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~ 507 (1697)
T KOG3687|consen 441 ESRGAVRIKVLDVLSFVLLINR-QFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTH 507 (1697)
T ss_pred cccceEEEeeHHHHHHHHhhhh-hhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchh
Confidence 4555566666666555543321 123344555432 2233567889999999999999887754
No 409
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=24.16 E-value=9.6e+02 Score=26.16 Aligned_cols=60 Identities=7% Similarity=0.014 Sum_probs=28.2
Q ss_pred cchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHhCCCc
Q 009359 214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ------DKSWRVRYMVANQLYELCEAVGPEP 276 (536)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~------d~~~~vR~~~~~~l~~l~~~~~~~~ 276 (536)
.++.+....+..++.++- |.....+.++.++...++ +....- .....++..++..++...
T Consensus 241 ~~~~i~~~l~RiLP~Lt~--G~~e~m~~Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~ 306 (802)
T PF13764_consen 241 SNPQILQALARILPFLTY--GNEEKMDALVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNS 306 (802)
T ss_pred CCHHHHHHHHHHhhHHhc--CCHHHHHHHHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCC
Confidence 355666655566655543 333333444444443332 111111 233677777776665433
No 410
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=21.87 E-value=1.7e+02 Score=18.74 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=15.5
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009359 240 AHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (536)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~l 268 (536)
+.+...+.+....-++..|...+++|.-+
T Consensus 18 ~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 18 QELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 33444444444444666777776666544
No 411
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=21.55 E-value=1.1e+03 Score=25.71 Aligned_cols=92 Identities=11% Similarity=0.161 Sum_probs=58.4
Q ss_pred HHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHhcCC-
Q 009359 219 RLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RSDVVPAYVRLLRD- 291 (536)
Q Consensus 219 r~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~ll~d- 291 (536)
-.-|++++..+...+.+ ..+.+.++..+.+++++.+.+++..++.++..++..-++... .+.+++.|.++...
T Consensus 73 v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~ 152 (819)
T KOG1877|consen 73 VKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHER 152 (819)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcc
Confidence 34455666666555544 345667788888888888888999999999998876554321 23455666655533
Q ss_pred ----CcHHHHHHHHHhHHHHHhh
Q 009359 292 ----NEAEVRIAAAGKVTKICRI 310 (536)
Q Consensus 292 ----~~~~vr~~a~~~l~~~~~~ 310 (536)
....+|.+.++++..+...
T Consensus 153 ~~~~~~~~lr~agl~gLsa~v~~ 175 (819)
T KOG1877|consen 153 GDDDMKDCLRAAGLQGLSAVVWL 175 (819)
T ss_pred cchhhhhhccHhhhhhHHHHHHH
Confidence 1234677777777665543
No 412
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=20.51 E-value=1.9e+02 Score=17.96 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=14.6
Q ss_pred HHHHHHHHhhcCcchHHHHHHHHhHHHhhcc
Q 009359 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (536)
Q Consensus 202 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 232 (536)
.+-.++.+++...++..|..-+.+++++.++
T Consensus 7 YLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 7 YLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 3445555555555555555555555555543
No 413
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=20.03 E-value=7.3e+02 Score=23.26 Aligned_cols=187 Identities=9% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHH-----HhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHH
Q 009359 347 APILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV-----NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (536)
Q Consensus 347 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l-----~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l 421 (536)
+.++..+.+...+++.++..+.+-+.+-|.-+......+ +.......+...=...+..++..... ....|+.+=
T Consensus 68 ~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg 146 (342)
T KOG1566|consen 68 VAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCG 146 (342)
T ss_pred HHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHH
Q ss_pred HHHHhhhchhhHHHHHHHH-----HHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh------hchhHH-HHhhccCCCh
Q 009359 422 PLLASQLGVGFFDDKLGAL-----CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM------QHIVPQ-VLEMINNPHY 489 (536)
Q Consensus 422 ~~l~~~~~~~~~~~~l~~~-----l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~------~~i~~~-l~~~~~d~~~ 489 (536)
..+.+...-+...+.++.. +..+.+-++-.+-.-|+.+...+.......... +.+.+. -..+++++|+
T Consensus 147 ~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Ny 226 (342)
T KOG1566|consen 147 NMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENY 226 (342)
T ss_pred HHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccce
Q ss_pred HHHHHHHHHHHHHhhhhChHHHHHhHHH------HHHhhcCCccchhhhcc
Q 009359 490 LYRMTILQAISLLAPVMGSEITCSQLLP------VVINASKDSESVAVTYS 534 (536)
Q Consensus 490 ~~r~~~~~~l~~l~~~~~~~~~~~~~~~------~l~~~l~d~~~~vr~~a 534 (536)
-.|-.+...+|.+....+........+. .+..++.|+..++.=.|
T Consensus 227 vtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eA 277 (342)
T KOG1566|consen 227 VTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEA 277 (342)
T ss_pred ehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHH
Done!