Query 009359
Match_columns 536
No_of_seqs 244 out of 2148
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 03:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 1.3E-58 4.3E-63 476.7 52.4 532 3-534 4-539 (588)
2 1b3u_A Protein (protein phosph 100.0 3E-49 1E-53 406.8 45.2 515 20-535 59-579 (588)
3 4fdd_A Transportin-1; heat rep 100.0 9.2E-35 3.2E-39 310.5 50.2 522 10-533 129-732 (852)
4 4fdd_A Transportin-1; heat rep 100.0 1.5E-34 5.2E-39 308.9 46.2 476 56-534 99-649 (852)
5 2bpt_A Importin beta-1 subunit 100.0 6.1E-33 2.1E-37 298.2 48.0 513 11-525 136-734 (861)
6 1u6g_C TIP120 protein, CAND1; 100.0 3.3E-34 1.1E-38 318.0 39.0 522 10-534 49-670 (1230)
7 2bpt_A Importin beta-1 subunit 100.0 3.7E-33 1.3E-37 299.9 43.7 521 12-534 98-702 (861)
8 1u6g_C TIP120 protein, CAND1; 100.0 4.7E-33 1.6E-37 308.7 37.8 517 9-527 6-623 (1230)
9 1qgr_A Protein (importin beta 100.0 3.5E-30 1.2E-34 277.3 49.2 514 11-526 130-746 (876)
10 1qgr_A Protein (importin beta 100.0 3.1E-30 1.1E-34 277.7 44.9 523 11-534 174-862 (876)
11 2vgl_B AP-2 complex subunit be 100.0 5.2E-26 1.8E-30 231.4 32.5 499 9-534 13-523 (591)
12 1ibr_B P95, importin beta-1 su 99.9 1.3E-24 4.6E-29 216.2 32.4 313 155-469 82-441 (462)
13 1ibr_B P95, importin beta-1 su 99.9 4E-24 1.4E-28 212.7 30.3 377 11-391 3-441 (462)
14 2vgl_B AP-2 complex subunit be 99.9 2.3E-23 7.9E-28 211.9 36.4 476 4-504 44-532 (591)
15 2z6g_A B-catenin; FULL-length, 99.9 3.3E-22 1.1E-26 209.4 38.0 512 11-526 117-685 (780)
16 2jdq_A Importin alpha-1 subuni 99.9 4.2E-22 1.4E-26 197.4 34.1 341 88-428 22-392 (450)
17 2jdq_A Importin alpha-1 subuni 99.9 2.7E-22 9.4E-27 198.7 30.9 370 165-534 22-434 (450)
18 1jdh_A Beta-catenin; beta-cate 99.9 2.5E-22 8.7E-27 203.3 29.9 464 71-534 2-521 (529)
19 1wa5_B Importin alpha subunit; 99.9 2.7E-22 9.4E-27 202.5 29.7 370 165-534 89-501 (530)
20 1wa5_B Importin alpha subunit; 99.9 1E-21 3.4E-26 198.3 32.7 372 134-505 96-511 (530)
21 2z6h_A Catenin beta-1, beta-ca 99.9 2.1E-21 7.2E-26 200.3 34.7 499 10-527 15-550 (644)
22 1w63_A Adapter-related protein 99.9 5.5E-22 1.9E-26 202.3 28.7 496 12-534 37-568 (618)
23 2z6g_A B-catenin; FULL-length, 99.9 1.1E-21 3.9E-26 205.3 31.4 478 53-534 121-654 (780)
24 3now_A UNC-45 protein, SD10334 99.9 1.9E-20 6.7E-25 190.9 39.3 481 24-505 219-783 (810)
25 2z6h_A Catenin beta-1, beta-ca 99.9 3.3E-21 1.1E-25 198.9 33.8 458 77-534 5-518 (644)
26 3now_A UNC-45 protein, SD10334 99.9 5.9E-20 2E-24 187.4 42.0 474 60-534 217-773 (810)
27 4b8j_A Importin subunit alpha- 99.9 5E-21 1.7E-25 193.3 32.0 370 165-534 76-487 (528)
28 1jdh_A Beta-catenin; beta-cate 99.9 1.1E-20 3.8E-25 191.2 34.4 446 57-502 27-528 (529)
29 4b8j_A Importin subunit alpha- 99.9 3.1E-20 1.1E-24 187.5 32.5 371 135-505 84-497 (528)
30 1w63_A Adapter-related protein 99.9 5.4E-20 1.9E-24 187.6 28.4 470 10-504 71-577 (618)
31 2vgl_A Adaptor protein complex 99.9 2.8E-18 9.4E-23 174.3 36.2 500 11-534 37-580 (621)
32 3ul1_B Importin subunit alpha- 99.8 7E-18 2.4E-22 168.5 29.5 370 165-534 59-469 (510)
33 3tpo_A Importin subunit alpha- 99.8 2.6E-17 8.9E-22 165.4 33.0 370 165-534 78-488 (529)
34 1oyz_A Hypothetical protein YI 99.8 1.3E-18 4.3E-23 160.3 21.5 252 165-461 25-278 (280)
35 2vgl_A Adaptor protein complex 99.8 7.5E-18 2.6E-22 171.1 28.6 479 4-503 69-588 (621)
36 3tpo_A Importin subunit alpha- 99.8 9.9E-17 3.4E-21 161.2 32.5 341 163-503 119-496 (529)
37 1oyz_A Hypothetical protein YI 99.8 8.1E-18 2.8E-22 154.9 22.5 253 203-500 24-278 (280)
38 3ul1_B Importin subunit alpha- 99.8 1.6E-16 5.4E-21 158.7 33.5 377 88-464 59-477 (510)
39 1wa5_C Importin alpha RE-expor 99.8 5.7E-16 2E-20 167.1 38.2 512 9-529 5-656 (960)
40 1wa5_C Importin alpha RE-expor 99.8 1.3E-15 4.4E-20 164.3 39.7 481 21-505 49-671 (960)
41 3ltj_A Alpharep-4; protein eng 99.7 4.2E-16 1.4E-20 135.6 19.5 185 162-386 13-197 (201)
42 3ltm_A Alpha-REP4; protein eng 99.7 3.6E-16 1.2E-20 137.2 19.0 185 164-388 20-204 (211)
43 3ltm_A Alpha-REP4; protein eng 99.7 7.3E-16 2.5E-20 135.3 20.2 188 240-467 18-205 (211)
44 3ltj_A Alpharep-4; protein eng 99.7 1.3E-15 4.4E-20 132.5 21.4 184 201-424 13-196 (201)
45 2x1g_F Cadmus; transport prote 99.7 3.2E-15 1.1E-19 161.9 28.6 485 9-507 7-618 (971)
46 2qk2_A LP04448P; mini spindles 99.7 1.6E-15 5.6E-20 135.9 21.3 196 234-470 8-210 (242)
47 2qk2_A LP04448P; mini spindles 99.7 2.1E-15 7.2E-20 135.2 21.1 192 318-514 14-215 (242)
48 2x19_B Importin-13; nuclear tr 99.7 2.6E-13 8.8E-18 147.1 41.2 487 7-507 22-602 (963)
49 2x1g_F Cadmus; transport prote 99.7 5.6E-14 1.9E-18 152.2 35.7 497 22-525 98-745 (971)
50 3m1i_C Exportin-1; heat repeat 99.7 2.2E-13 7.7E-18 148.2 37.7 491 7-507 14-621 (1049)
51 2x19_B Importin-13; nuclear tr 99.7 2.9E-12 9.8E-17 138.9 44.4 482 21-510 115-720 (963)
52 3m1i_C Exportin-1; heat repeat 99.6 2.1E-12 7.3E-17 140.5 40.7 464 52-525 21-600 (1049)
53 2qk1_A Protein STU2; STU2P, XM 99.6 5.4E-14 1.8E-18 125.4 19.9 188 206-393 20-226 (249)
54 4hxt_A De novo protein OR329; 99.6 2E-13 6.8E-18 123.4 22.2 228 282-509 4-246 (252)
55 2qk1_A Protein STU2; STU2P, XM 99.6 8.9E-14 3E-18 123.9 18.4 195 284-483 20-234 (249)
56 4hxt_A De novo protein OR329; 99.6 2.4E-13 8.3E-18 122.8 20.6 224 165-388 4-242 (252)
57 4hat_C Exportin-1; heat repeat 99.6 4.5E-11 1.5E-15 127.4 40.2 492 9-510 16-624 (1023)
58 4db8_A Armadillo-repeat protei 99.6 1E-13 3.4E-18 125.3 17.2 222 165-386 14-250 (252)
59 1xm9_A Plakophilin 1; armadill 99.6 4.6E-13 1.6E-17 131.5 22.5 337 166-504 5-449 (457)
60 3opb_A SWI5-dependent HO expre 99.5 2.6E-10 9E-15 114.5 41.3 506 11-526 170-759 (778)
61 4db8_A Armadillo-repeat protei 99.5 4.5E-13 1.5E-17 121.0 19.8 225 280-504 12-251 (252)
62 3opb_A SWI5-dependent HO expre 99.5 3.4E-11 1.2E-15 120.8 34.8 475 50-532 170-717 (778)
63 3l6x_A Catenin delta-1; cateni 99.5 1E-11 3.6E-16 122.7 30.4 342 164-505 49-477 (584)
64 3l6x_A Catenin delta-1; cateni 99.5 8.2E-12 2.8E-16 123.4 28.3 336 199-534 45-467 (584)
65 1xm9_A Plakophilin 1; armadill 99.5 2.6E-12 9E-17 126.1 24.4 329 204-534 4-440 (457)
66 4hat_C Exportin-1; heat repeat 99.5 1.5E-10 5.2E-15 123.4 39.2 443 58-510 27-575 (1023)
67 3ibv_A Exportin-T; karyopherin 99.5 1.6E-11 5.5E-16 130.8 31.8 492 10-524 7-588 (980)
68 3ibv_A Exportin-T; karyopherin 99.5 2E-10 6.8E-15 122.4 39.1 516 11-531 235-904 (980)
69 3nmz_A APC variant protein; pr 99.5 1E-11 3.4E-16 120.0 26.6 247 260-507 167-453 (458)
70 1lrv_A LRV, leucine-rich repea 99.5 1.3E-14 4.3E-19 127.1 3.7 187 169-461 56-242 (244)
71 4ady_A RPN2, 26S proteasome re 99.4 7.8E-11 2.7E-15 120.7 29.3 308 165-502 394-717 (963)
72 3nmz_A APC variant protein; pr 99.4 5.6E-11 1.9E-15 114.8 26.4 290 177-466 96-451 (458)
73 4ady_A RPN2, 26S proteasome re 99.4 2.9E-10 1E-14 116.5 31.6 331 99-464 371-718 (963)
74 1lrv_A LRV, leucine-rich repea 99.4 9.1E-14 3.1E-18 121.7 4.6 186 132-422 57-242 (244)
75 4db6_A Armadillo repeat protei 99.4 2.1E-11 7.2E-16 106.6 18.1 186 162-347 11-208 (210)
76 2iw3_A Elongation factor 3A; a 99.4 1.8E-10 6.1E-15 119.7 26.5 279 219-506 31-326 (986)
77 4db6_A Armadillo repeat protei 99.4 7.2E-11 2.5E-15 103.1 19.4 146 359-504 55-209 (210)
78 3a6p_A Exportin-5; exportin-5, 99.3 8.5E-09 2.9E-13 112.9 38.5 508 8-524 10-681 (1204)
79 2iw3_A Elongation factor 3A; a 99.3 1.4E-09 4.8E-14 113.1 30.1 281 103-390 31-327 (986)
80 3gjx_A Exportin-1; transport, 99.3 2E-08 6.7E-13 106.8 38.4 491 10-510 29-650 (1073)
81 3gjx_A Exportin-1; transport, 99.3 5.1E-08 1.7E-12 103.7 40.2 444 56-510 37-601 (1073)
82 2of3_A ZYG-9; multifunctional 99.2 1.3E-09 4.3E-14 95.8 19.8 174 136-315 57-242 (266)
83 3b2a_A TON_1937, putative unch 99.2 4.6E-09 1.6E-13 87.6 21.5 183 163-349 33-219 (265)
84 3nmw_A APC variant protein; AR 99.2 1.7E-09 5.8E-14 101.2 21.3 217 293-509 97-339 (354)
85 3oc3_A Helicase MOT1, MOT1; re 99.2 5.9E-10 2E-14 104.8 17.2 259 7-305 172-432 (800)
86 2of3_A ZYG-9; multifunctional 99.2 1.4E-09 4.6E-14 95.6 18.3 146 320-471 88-242 (266)
87 2db0_A 253AA long hypothetical 99.2 1.2E-08 4.2E-13 81.2 21.3 214 162-386 31-245 (253)
88 3tjz_B Coatomer subunit gamma; 99.2 3.6E-10 1.2E-14 104.3 14.7 292 154-462 59-350 (355)
89 3nmw_A APC variant protein; AR 99.2 3E-09 1E-13 99.6 20.9 213 215-427 97-335 (354)
90 3oc3_A Helicase MOT1, MOT1; re 99.2 4.8E-10 1.6E-14 105.4 14.6 256 164-461 175-432 (800)
91 3a6p_A Exportin-5; exportin-5, 99.2 5.1E-08 1.7E-12 106.8 32.8 455 59-523 25-634 (1204)
92 2db0_A 253AA long hypothetical 99.2 6.6E-08 2.3E-12 77.0 24.2 216 199-425 29-245 (253)
93 3tjz_B Coatomer subunit gamma; 99.1 1.6E-09 5.6E-14 100.0 15.9 277 242-535 69-345 (355)
94 4ffb_C Protein STU2; tubulin f 99.1 6.5E-09 2.2E-13 94.7 17.2 183 324-509 14-217 (278)
95 4ffb_C Protein STU2; tubulin f 99.0 1.1E-08 3.8E-13 93.2 18.5 147 321-470 57-217 (278)
96 1xqr_A HSPBP1 protein; armadil 99.0 3.4E-08 1.1E-12 89.9 20.6 172 295-466 55-239 (296)
97 1xqr_A HSPBP1 protein; armadil 99.0 3.3E-08 1.1E-12 89.9 19.8 172 334-505 55-239 (296)
98 3b2a_A TON_1937, putative unch 99.0 1.4E-07 4.8E-12 78.8 20.7 180 127-310 35-219 (265)
99 3l9t_A Putative uncharacterize 99.0 2.4E-08 8.2E-13 84.4 16.4 139 200-349 69-208 (240)
100 1te4_A Conserved protein MTH18 99.0 1.2E-10 4E-15 92.9 1.4 117 203-344 13-129 (131)
101 3l9t_A Putative uncharacterize 98.9 3.1E-08 1E-12 83.8 15.7 139 123-271 69-208 (240)
102 1te4_A Conserved protein MTH18 98.9 2.5E-10 8.5E-15 91.0 1.5 117 281-422 13-129 (131)
103 1vsy_5 Proteasome activator BL 98.5 1.6E-06 5.3E-11 91.7 14.3 187 281-471 761-972 (997)
104 1vsy_5 Proteasome activator BL 98.4 4.7E-06 1.6E-10 88.1 17.6 375 154-534 499-957 (997)
105 3u0r_A Apoptosis inhibitor 5; 98.3 0.00019 6.6E-09 67.2 23.0 258 176-445 41-317 (507)
106 3u0r_A Apoptosis inhibitor 5; 98.2 0.00079 2.7E-08 63.2 23.9 282 214-507 40-361 (507)
107 3grl_A General vesicular trans 98.2 0.0013 4.5E-08 64.8 26.1 301 9-309 21-394 (651)
108 4gmo_A Putative uncharacterize 98.1 0.015 5.1E-07 59.8 34.7 75 46-123 33-113 (684)
109 3grl_A General vesicular trans 98.1 0.0019 6.6E-08 63.6 25.0 225 163-387 122-394 (651)
110 4gmo_A Putative uncharacterize 98.0 0.0012 4E-08 68.1 22.9 145 125-270 35-214 (684)
111 3tt9_A Plakophilin-2; cell adh 97.9 0.00044 1.5E-08 59.9 16.2 58 449-506 164-231 (233)
112 3tt9_A Plakophilin-2; cell adh 97.9 0.00021 7.1E-09 61.9 14.0 145 165-309 10-180 (233)
113 1lsh_A Lipovitellin (LV-1N, LV 97.2 0.024 8.2E-07 61.2 20.9 169 242-430 392-580 (1056)
114 3gs3_A Symplekin, LD45768P; he 97.2 0.093 3.2E-06 45.9 23.0 108 317-426 51-173 (257)
115 1lsh_A Lipovitellin (LV-1N, LV 97.1 0.011 3.8E-07 63.8 16.6 159 331-509 407-581 (1056)
116 3o2t_A Symplekin; heat repeat, 96.8 0.3 1E-05 45.3 26.3 254 239-523 24-320 (386)
117 3gs3_A Symplekin, LD45768P; he 96.8 0.24 8.1E-06 43.3 25.1 72 157-230 47-118 (257)
118 3o2t_A Symplekin; heat repeat, 96.1 0.86 3E-05 42.3 28.9 69 238-308 60-128 (386)
119 4atg_A TAF6; transcription, TF 96.0 0.19 6.6E-06 41.5 13.3 151 164-328 12-177 (196)
120 3ldz_A STAM-1, signal transduc 95.5 0.14 4.9E-06 40.0 10.4 98 406-509 18-119 (140)
121 4atg_A TAF6; transcription, TF 95.4 0.47 1.6E-05 39.2 13.4 141 374-525 24-179 (196)
122 3g2s_A C-terminal fragment of 95.4 0.24 8.4E-06 39.1 11.2 97 407-509 25-131 (149)
123 1mhq_A ADP-ribosylation factor 94.8 0.96 3.3E-05 35.6 13.3 98 406-509 14-121 (148)
124 2b6c_A Hypothetical protein EF 94.8 0.33 1.1E-05 41.5 11.5 130 128-270 58-188 (220)
125 1x5b_A Signal transducing adap 94.3 0.54 1.9E-05 37.8 10.9 97 407-509 29-130 (163)
126 3jxy_A Alkylpurine DNA glycosy 94.3 0.55 1.9E-05 40.5 11.8 159 128-305 64-223 (232)
127 1juq_A ADP-ribosylation factor 93.7 1.2 4.2E-05 36.0 12.0 108 407-520 27-144 (171)
128 3ldz_A STAM-1, signal transduc 93.5 1.7 5.7E-05 33.9 12.0 75 161-235 40-118 (140)
129 2b6c_A Hypothetical protein EF 93.2 3.5 0.00012 35.1 15.4 131 205-349 58-189 (220)
130 3jxy_A Alkylpurine DNA glycosy 93.0 2.9 9.8E-05 36.0 14.1 158 205-383 64-223 (232)
131 3g2s_A C-terminal fragment of 92.9 2.8 9.4E-05 33.0 12.7 75 161-235 46-130 (149)
132 1mhq_A ADP-ribosylation factor 92.5 3 0.0001 32.8 12.2 75 161-235 36-120 (148)
133 1x5b_A Signal transducing adap 92.4 1.9 6.6E-05 34.6 11.2 74 162-235 51-129 (163)
134 1juq_A ADP-ribosylation factor 91.3 4.3 0.00015 32.8 12.2 75 161-235 48-132 (171)
135 3zyq_A Hepatocyte growth facto 91.3 1.6 5.5E-05 37.3 10.2 97 407-509 22-123 (226)
136 1upk_A MO25 protein; transfera 91.0 8.6 0.0003 34.6 22.0 105 362-466 168-284 (341)
137 3zyq_A Hepatocyte growth facto 90.2 4.2 0.00014 34.7 11.8 74 162-235 44-122 (226)
138 1elk_A Target of MYB1; superhe 89.9 4.9 0.00017 32.0 11.3 95 408-508 31-134 (157)
139 1dvp_A HRS, hepatocyte growth 87.8 2.8 9.6E-05 35.7 9.0 96 407-508 19-119 (220)
140 1elk_A Target of MYB1; superhe 86.6 8.7 0.0003 30.5 10.7 73 162-234 52-133 (157)
141 1dvp_A HRS, hepatocyte growth 85.2 14 0.00047 31.4 12.0 73 162-234 41-118 (220)
142 1vdy_A Hypothetical protein (R 84.7 7.3 0.00025 30.1 8.9 102 402-504 16-130 (140)
143 1upk_A MO25 protein; transfera 84.6 23 0.00077 32.0 24.6 186 200-387 76-283 (341)
144 2npp_B PP2A, B subunit, serine 84.2 29 0.00099 32.9 17.4 208 11-231 164-399 (449)
145 3rru_A TOM1L1 protein; structu 82.7 12 0.0004 29.5 9.6 96 407-508 30-134 (152)
146 2npp_B PP2A, B subunit, serine 82.3 35 0.0012 32.4 20.5 251 251-505 127-400 (449)
147 3ut4_A CTHE_2751, putative unc 82.2 15 0.0005 28.0 10.6 99 390-502 25-128 (134)
148 3fga_B Serine/threonine-protei 81.4 35 0.0012 31.8 21.2 252 251-505 94-367 (403)
149 2fv2_A RCD1 required for cell 81.1 26 0.00089 30.2 15.2 68 124-191 100-173 (268)
150 1vdy_A Hypothetical protein (R 79.2 9 0.00031 29.6 7.6 66 129-194 15-80 (140)
151 3ut4_A CTHE_2751, putative unc 78.1 21 0.0007 27.2 11.2 100 155-267 23-127 (134)
152 3rru_A TOM1L1 protein; structu 76.9 25 0.00086 27.6 9.8 74 162-235 52-134 (152)
153 1t06_A Hypothetical protein; s 76.8 32 0.0011 29.4 11.5 69 203-271 109-181 (235)
154 1vsy_4 Proteasome activator BL 76.2 77 0.0026 32.9 27.1 114 160-273 336-458 (799)
155 1sz9_A PCF11 protein; RNA poly 70.6 35 0.0012 26.5 11.1 73 433-505 40-115 (144)
156 2jak_A Serine/threonine-protei 68.3 76 0.0026 29.4 16.8 208 251-460 139-362 (392)
157 1w9c_A CRM1 protein, exportin 65.8 76 0.0026 28.5 17.6 71 398-468 120-199 (321)
158 1sz9_A PCF11 protein; RNA poly 57.8 64 0.0022 25.0 8.9 37 199-235 40-76 (144)
159 3fga_B Serine/threonine-protei 52.9 1.5E+02 0.005 27.7 23.3 221 164-387 130-366 (403)
160 2jak_A Serine/threonine-protei 52.2 1.5E+02 0.0051 27.5 16.4 202 329-532 139-356 (392)
161 1t06_A Hypothetical protein; s 51.0 1E+02 0.0035 26.2 9.5 70 397-466 108-181 (235)
162 3dad_A FH1/FH2 domain-containi 49.0 1.5E+02 0.0052 26.7 16.7 31 477-507 256-289 (339)
163 3dad_A FH1/FH2 domain-containi 46.3 1.7E+02 0.0057 26.5 17.9 117 353-469 155-290 (339)
164 1vsy_4 Proteasome activator BL 40.8 3.3E+02 0.011 28.2 26.4 115 198-312 335-458 (799)
165 2qzg_A Conserved uncharacteriz 37.6 1E+02 0.0035 21.5 6.3 66 437-502 19-89 (94)
166 4fu3_A Regulation of nuclear P 36.0 1.1E+02 0.0036 23.2 6.7 57 365-428 14-70 (135)
167 3k49_A MRNA-binding protein PU 34.8 2.7E+02 0.0092 25.5 12.0 14 145-158 42-55 (369)
168 3k49_A MRNA-binding protein PU 32.9 2.9E+02 0.0098 25.3 13.2 12 395-406 333-344 (369)
169 4fu3_A Regulation of nuclear P 29.9 1.6E+02 0.0055 22.2 6.8 111 406-526 16-132 (135)
170 3ebb_A Phospholipase A2-activa 29.5 3E+02 0.01 24.4 16.3 68 241-308 191-262 (304)
171 2qzg_A Conserved uncharacteriz 29.4 1.5E+02 0.005 20.8 9.2 71 354-424 14-89 (94)
172 4f52_E Glomulin; cullin-ring E 28.6 2.6E+02 0.009 27.7 9.5 29 90-118 321-349 (596)
173 3bwt_A Protein PUF4; pumilio, 28.1 3.3E+02 0.011 24.4 13.6 11 440-450 274-284 (333)
174 3s4w_B Protein FACD2, fanconi 26.8 6.8E+02 0.023 27.7 16.8 209 65-273 324-552 (1323)
175 1w9c_A CRM1 protein, exportin 26.4 3.5E+02 0.012 24.2 17.8 92 435-526 118-227 (321)
176 4flb_A Regulation of nuclear P 21.9 2.5E+02 0.0087 20.9 10.5 33 396-428 39-71 (132)
177 3gvo_A Pumilio 2, pumilio homo 21.5 4.5E+02 0.015 23.7 13.8 302 167-491 40-350 (351)
178 3ebb_A Phospholipase A2-activa 21.4 4.3E+02 0.015 23.4 11.8 53 141-193 164-221 (304)
179 4f52_E Glomulin; cullin-ring E 20.1 6.4E+02 0.022 24.9 12.9 54 445-501 375-428 (596)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.3e-58 Score=476.65 Aligned_cols=532 Identities=59% Similarity=0.964 Sum_probs=492.9
Q ss_pred CCCCCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCCcc
Q 009359 3 MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE 82 (536)
Q Consensus 3 ~~~~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 82 (536)
.+|+++++|..+++.++|+|+++|..|++.+..++..+|++..+++++|++.+..|++++||..++..++.+.+.++++.
T Consensus 4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~ 83 (588)
T 1b3u_A 4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE 83 (588)
T ss_dssp CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence 45789999999999999999999999999999999999999889999999988668899999999999999999888888
Q ss_pred chhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHH
Q 009359 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKT 162 (536)
Q Consensus 83 ~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~ 162 (536)
+...+++.+..+..++++.||+.|+.++..++...+++.....++|.+..+.+++++..|..++.+++.++...++...+
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88999999999989999999999999999999999988888889999999999888999999999999999999888889
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhh
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 242 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (536)
.+++.+..+++|+++.||..++++|+.++...+++.+.+.++|.+..+++|+++.+|..|+.+++.++...+++...+.+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999988877777889999999999999999999999999999998887777889
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH----HHHH
Q 009359 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQ 318 (536)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~ 318 (536)
+|.+..+++|++|.||..++.+++.++..+|.+...+.++|.+.++++|++++||.+|+.+++.++..++.+ .+.+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 999999999999999999999999999988876656789999999999999999999999999999988765 5568
Q ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhH
Q 009359 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (536)
Q Consensus 319 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 398 (536)
.++|.+..+++|++|.||..++.+++.++..+|.+...+.++|.+...++|++++||..++.+++.++..++.+...+.+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999999999999999999999999999988777889999999999999999999999999999999888777889
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhH
Q 009359 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478 (536)
Q Consensus 399 ~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~ 478 (536)
+|.+.+.++|++|++|..++.+++.++..+|.+++.+.++|.+.+.+.|++..||..|+.+++.+...+|+.+..+.++|
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 99999999999999999999999999999998877788999999999999999999999999999999998776678888
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccchhhhcc
Q 009359 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 479 ~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
.+..+.+|+++.+|..++++++.++..+|.+.+.++++|.+..+++|++++||..+
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a 539 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNV 539 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHH
Confidence 88888888899999999999999998888888888889999999999998888654
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3e-49 Score=406.82 Aligned_cols=515 Identities=18% Similarity=0.263 Sum_probs=466.9
Q ss_pred ChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCc
Q 009359 20 NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVE 98 (536)
Q Consensus 20 s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~ 98 (536)
++++.+|..+.+.|+.+...++.......++|.+.. ..|+++.||..++.+++.++...+.....+.++|++..+.+++
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~ 138 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD 138 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS
T ss_pred CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC
Confidence 788899999999998887766655556778888877 5678899999999999999887776556677889999998888
Q ss_pred chHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH-HHHHHHHHHHHhcCCCCh
Q 009359 99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIYRQLCQDDMP 177 (536)
Q Consensus 99 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~ll~d~~~ 177 (536)
+..+|..++..++.+....+.. ..+.++|.+..+.+|+++.+|..++..++.+....+.+ ..+.++|.+..+++|+++
T Consensus 139 ~~~~R~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~ 217 (588)
T 1b3u_A 139 WFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD 217 (588)
T ss_dssp SHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCH
T ss_pred CcHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcH
Confidence 9999999999999998887753 46678999999999999999999999999999888875 567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHH
Q 009359 178 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV 257 (536)
Q Consensus 178 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~v 257 (536)
.||..|+.+|+.++...+++...+.++|.+..+++|++|.+|..++++++.++...+++.+.+.++|.+.++++|+++.|
T Consensus 218 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 297 (588)
T 1b3u_A 218 SVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297 (588)
T ss_dssp HHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHH
Confidence 99999999999999988877777889999999999999999999999999999988876667789999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCH
Q 009359 258 RYMVANQLYELCEAVGPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 333 (536)
Q Consensus 258 R~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~ 333 (536)
|..++.+++.++..++.+ .+.+.++|.+..+++|+++.||.+++.+++.++..+|.+...+.++|.+..+++|+++
T Consensus 298 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~ 377 (588)
T 1b3u_A 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECP 377 (588)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCch
Confidence 999999999999988876 3456899999999999999999999999999999998887778889999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHH
Q 009359 334 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 413 (536)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 413 (536)
.||..++.+++.+...++.+...+.++|.+...++|+++.+|..++.+++.+...+|.+.+.+.++|.+...++|+++.+
T Consensus 378 ~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~V 457 (588)
T 1b3u_A 378 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAI 457 (588)
T ss_dssp HHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999988887777889999999999999999999999999999999987666789999999999999999
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHH
Q 009359 414 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRM 493 (536)
Q Consensus 414 R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~ 493 (536)
|..++.+++.++..+|+.++.+.++|.+..++.|+++.+|..++.+++.++..+|.....+.++|.+.+.++|++..+|.
T Consensus 458 r~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~ 537 (588)
T 1b3u_A 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 537 (588)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHH
Confidence 99999999999999998877788999999999999999999999999999999888766788999999999999999999
Q ss_pred HHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccchhhhccC
Q 009359 494 TILQAISLLAPVMGSEITCSQLLPVVINASKDSESVAVTYSH 535 (536)
Q Consensus 494 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~ 535 (536)
.++++++.++..+|.+++.+.++|.+..+++|+++.||..|.
T Consensus 538 ~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~ 579 (588)
T 1b3u_A 538 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 579 (588)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHH
Confidence 999999999999999887789999999999999999998763
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=9.2e-35 Score=310.53 Aligned_cols=522 Identities=16% Similarity=0.142 Sum_probs=412.3
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhh-------hhcccccccc-ccCCchHHHHHHHHHHhchhcccCCc
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT-------RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGL 81 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~-------~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~ 81 (536)
-+..+++.+.++++..|..|+..|..++...++... .+.++|.+.+ +.++++.||..+..++..++...++.
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 367888999999999999999999999888765432 2456666666 67889999999999999887643321
Q ss_pred --cchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCC
Q 009359 82 --EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157 (536)
Q Consensus 82 --~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (536)
.+...+++.+..+.+|+++.+|..+++++..++...++. .....+++.+..+..++++.+|..++..+..+.+...
T Consensus 209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh
Confidence 234456677777788999999999999999999876542 1233467777778888888999999998888876432
Q ss_pred h-----HHHHHHHHHHHHhc-----------CC-----------CChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 009359 158 E-----ALKTELRTIYRQLC-----------QD-----------DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEEL 210 (536)
Q Consensus 158 ~-----~~~~~l~~~l~~ll-----------~d-----------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~ 210 (536)
. .+...++|.+...+ .| .+|.+|..|+.+++.++...+ +...+.++|.+.+.
T Consensus 289 ~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 289 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKEL 367 (852)
T ss_dssp HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence 1 24567788887776 44 568899999999999999887 45667899999999
Q ss_pred hcCcchHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHH
Q 009359 211 TQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAY 285 (536)
Q Consensus 211 l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l 285 (536)
++|++|.+|..|+.+++.+++..++ ..+.+.++|.+...++|+++.||.+++.+++.++..++. ..+...+++.+
T Consensus 368 l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999999999999999987765 345678999999999999999999999999999987653 23455788999
Q ss_pred HHhcCCCcHHHHHHHHHhHHHHHhhcChH--HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH----HHHHHhH
Q 009359 286 VRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQL 359 (536)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l 359 (536)
.+.+.|+++.||.+|+.+++.+++..+.. .+.+.+++.+...+++.+......++++++.++...|. ..+.+.+
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l 527 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML 527 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHH
Confidence 99999999999999999999999877654 34577778887777777777777788888888766553 3467788
Q ss_pred HHHHH---HhhCCCCHHHHHHHHHhhHHHHhhhchhHH--HhhHHHHHHHhhc-----------------CCChHHHHHH
Q 009359 360 LPIFL---SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE-----------------DRHWRVRLAI 417 (536)
Q Consensus 360 ~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~-----------------~~~~~~R~~a 417 (536)
+|.+. ..+.|.++.+| .++++++.++..+|.... .+.+++.+...+. .++..+|..+
T Consensus 528 ~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 528 MPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence 88887 45677778786 789999999998886421 2334443333321 2356789999
Q ss_pred HHHHHHHHhhhchhhHH----HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh--hchhHHHHhhccCCChHH
Q 009359 418 IEYIPLLASQLGVGFFD----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEMINNPHYLY 491 (536)
Q Consensus 418 ~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~~ 491 (536)
+.+++.++..+|..+.. +.+++.+..++.|+++.||..+..+++.++..++..+.. ..++|.+.+.+.++++.+
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v 686 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 686 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHH
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHH
Confidence 99999999999865432 457999999999999999999999999999998865433 568888888888889999
Q ss_pred HHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCCccc--hhhhc
Q 009359 492 RMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDSES--VAVTY 533 (536)
Q Consensus 492 r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~--~vr~~ 533 (536)
|..++++++.++..+|.++ +...+++.+...++++.. .+++.
T Consensus 687 ~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~ 732 (852)
T 4fdd_A 687 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLEN 732 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHH
Confidence 9999999999999998654 567889999999988643 35543
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.5e-34 Score=308.87 Aligned_cols=476 Identities=18% Similarity=0.151 Sum_probs=383.8
Q ss_pred ccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhH-------HhhHHH
Q 009359 56 NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDV-------VEHFIP 128 (536)
Q Consensus 56 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~-------~~~l~~ 128 (536)
+.++++.||..++.+++.+++.. ++..|+.+++.+...++++++.+|+.++.+++.+++..++... ...++|
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~ 177 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHH
Confidence 56778899999999999998865 3567899999999999999999999999999999998765321 345777
Q ss_pred HHHHHhcCcccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhhHHHH
Q 009359 129 LVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEI 203 (536)
Q Consensus 129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l 203 (536)
.+.++.++++..+|..++.++..+....+.. ....+++.+..+++|+++.||..++++|+.+++..+. ..+.+.+
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l 257 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNI 257 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 7777778888899999999998887665543 4567888899999999999999999999999987654 2455678
Q ss_pred HHHHHHhhcCcchHHHHHHHHhHHHhhcccCc----hhhhhhhHHHHHHhc-----------CC-----------CCHHH
Q 009359 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFS-----------QD-----------KSWRV 257 (536)
Q Consensus 204 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~-----------~d-----------~~~~v 257 (536)
++.+.+.++|.++.||..|++.+..+++.... ..+...++|.+...+ .| .+|.+
T Consensus 258 ~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~v 337 (852)
T 4fdd_A 258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL 337 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCH
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchH
Confidence 99999999999999999999999998864211 224556778777665 34 57889
Q ss_pred HHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH--HHHHhhhHHHHHhccCCCHHH
Q 009359 258 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHV 335 (536)
Q Consensus 258 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~i~~~l~~l~~d~~~~v 335 (536)
|.+++.+++.++...|. ...+.++|.+.+.+.|+++.+|.+|+.+++.+++..+.. ...+.++|.+...++|+++.|
T Consensus 338 r~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~V 416 (852)
T 4fdd_A 338 RKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 416 (852)
T ss_dssp HHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999884 345678999999999999999999999999998765432 345778899999999999999
Q ss_pred HHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchh--HHHhhHHHHHHHhhcCCC
Q 009359 336 RSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRH 410 (536)
Q Consensus 336 r~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~~~~ 410 (536)
|.+++.+++.++..++. ..+...+++.+...++|+++.||..|+.+++.++...+.. .+.+.+++.+...+++.+
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC
Confidence 99999999999886543 2355788999999999999999999999999999877754 234678888888888777
Q ss_pred hHHHHHHHHHHHHHHhhhchhh----HHHHHHHHHH---HHhcCcchHHHHHHHHHHHHHHHHhChhhhh--hchhHHHH
Q 009359 411 WRVRLAIIEYIPLLASQLGVGF----FDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVL 481 (536)
Q Consensus 411 ~~~R~~a~~~l~~l~~~~~~~~----~~~~l~~~l~---~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~ 481 (536)
......++.+++.++...|+.. +.+.++|.+. ..+.|.++.+| .++++++.++..+|..+.. +.+++.+.
T Consensus 497 ~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~ 575 (852)
T 4fdd_A 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCV 575 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777788899999988777644 5677888777 45667778886 7899999999999875432 34444333
Q ss_pred hhc-----------------cCCChHHHHHHHHHHHHHhhhhChHHH----HHhHHHHHHhhcCCccchhhhcc
Q 009359 482 EMI-----------------NNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 482 ~~~-----------------~d~~~~~r~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
+.+ ..++..++..++++++.++..+|.++. .+.+++.+..+++|+.+.||+.|
T Consensus 576 ~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a 649 (852)
T 4fdd_A 576 NLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 649 (852)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHH
Confidence 221 224678999999999999999997642 25789999999999999999765
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=6.1e-33 Score=298.21 Aligned_cols=513 Identities=16% Similarity=0.195 Sum_probs=408.9
Q ss_pred HHHHHHHhcCh-hHHHHHHHhhhHHHHHHhhChH-----hhhhcccccccc-ccCC--chHHHHHHHHHHhchhcccCCc
Q 009359 11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGL 81 (536)
Q Consensus 11 i~~l~~~l~s~-~~~~R~~a~~~l~~~~~~~~~~-----~~~~~l~~~l~~-~~d~--~~~vr~~a~~~l~~l~~~~~~~ 81 (536)
+..+++.+.++ ++..|..|+..+..+....+++ .....+++.+.. +.|+ ++.||..+.++++.++..++..
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 215 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888 9999999999999998877653 234566666665 5565 7899999999999876654321
Q ss_pred ----cchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHh-hHHHHHHHHhcCcccchhhHHHhhhhhhcc
Q 009359 82 ----EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVE-HFIPLVKRLAAGEWFTARVSSCGLFHVAYP 154 (536)
Q Consensus 82 ----~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~ 154 (536)
..+..+++.+.....++++.+|+.+++++..++...+.. .... .+++.+.....+.+..+|..++..+..+..
T Consensus 216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 295 (861)
T 2bpt_A 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 123557777777888899999999999999999876541 1223 566777677777788899999988877755
Q ss_pred CCC--------------------hHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 009359 155 SAP--------------------EALKTELRTIYRQLCQD-------DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207 (536)
Q Consensus 155 ~~~--------------------~~~~~~l~~~l~~ll~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 207 (536)
... ......++|.+...+.+ ++|.+|..+..+|+.++..++ +...+.++|.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l 374 (861)
T 2bpt_A 296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFV 374 (861)
T ss_dssp HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHH
T ss_pred HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHH
Confidence 321 12346678888777653 458999999999999999887 45567899999
Q ss_pred HHhhcCcchHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----ccccc
Q 009359 208 EELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRSD 280 (536)
Q Consensus 208 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~ 280 (536)
.+.+++.+|.+|..|+.+++.+++..++ ..+.+.++|.+...++|+++.||..++.+++.++..++.. .+.+.
T Consensus 375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 9999999999999999999999987763 2345678899999999999999999999999999987643 34567
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh---H---HHHHhhhHHHHHhcc--CCCHHHHHHHHHHHHHhhhhhCH
Q 009359 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGK 352 (536)
Q Consensus 281 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~i~~~l~~l~~--d~~~~vr~~a~~~l~~l~~~~~~ 352 (536)
++|.+...++|+ +.||.+|+.++..+++.++. . .+.+.+++.+...+. |.++.+|..++++++.++...+.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 899999999887 99999999999999987651 1 345677777777776 45589999999999999987775
Q ss_pred H--HHHHhHHHHHHHhhCC---------------CCHHHHHHHHHhhHHHHhhhchh--HHHhhHHHHHHHhhcCCCh-H
Q 009359 353 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R 412 (536)
Q Consensus 353 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~~~~~-~ 412 (536)
+ .+...++|.+...+.+ ....+|..++.+++.++..+|.. .+.+.+++.+...+++.++ .
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence 3 2445677777776653 24578899999999999888764 2346788888888888877 8
Q ss_pred HHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhh--hhchhHHHHhhccCCC
Q 009359 413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPH 488 (536)
Q Consensus 413 ~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~ 488 (536)
+|..++.+++.++...|..+ +.+.++|.+...+.++++.+|..++.+++.++..+|..+. ...+++.+.+.+.+++
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence 99999999999999888765 3577999999999999999999999999999999886532 3677888888877764
Q ss_pred --hHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCC
Q 009359 489 --YLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKD 525 (536)
Q Consensus 489 --~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d 525 (536)
..+|..++.+++.++..+|..+ +.+.++|.+...++.
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999998775 577889999988774
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=3.3e-34 Score=317.96 Aligned_cols=522 Identities=13% Similarity=0.168 Sum_probs=415.2
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCc-------
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGL------- 81 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~------- 81 (536)
-+..+++.+.++++.+|..|+..|+.++..+++ ...+.+++.+.. +.|+++.+|.+++.+++.++..++..
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 366788999999999999999999999887765 445778888777 77889999999999999998877654
Q ss_pred -cchhccchHHHhhhc-CcchHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCC
Q 009359 82 -EYANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157 (536)
Q Consensus 82 -~~~~~ll~~l~~l~~-~~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (536)
.+++.++|.+...+. +++..+|..++.++..++...+. ..+.+.+++.+.....+++..+|..++.+++.+....+
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 268899998888777 47889999999999999875543 12335566777667778788999999999999998887
Q ss_pred hHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccC
Q 009359 158 EALKTELRTIYRQLCQD-DMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 158 ~~~~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 234 (536)
+.....+++.+...+.+ .++.+|..++++++.++...+.. .+.+.++|.+.+.+.|+++.+|..++.+++.++..++
T Consensus 208 ~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 208 NIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 66555556655554433 34678999999999999887652 3457799999999999999999999999999999877
Q ss_pred ch--hhhhhhHHHHHHhcC-------------------------------------CCCHHHHHHHHHHHHHHHHHhCC-
Q 009359 235 PQ--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP- 274 (536)
Q Consensus 235 ~~--~~~~~l~~~l~~~~~-------------------------------------d~~~~vR~~~~~~l~~l~~~~~~- 274 (536)
++ .+.+.++|.+.+.+. |.+|.+|.+++.+++.++...+.
T Consensus 288 ~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~ 367 (1230)
T 1u6g_C 288 KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 367 (1230)
T ss_dssp CCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH
Confidence 63 356667777655442 23588999999999999986554
Q ss_pred -CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh---------------------HHHHHhhhHHHHHhccCCC
Q 009359 275 -EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------------------ELAIQHILPCVKELSSDSS 332 (536)
Q Consensus 275 -~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~i~~~l~~l~~d~~ 332 (536)
..+.+.++|.+...+.|.++.||.+++.++..++...+. ..+.+.+++.+...+.|++
T Consensus 368 ~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~ 447 (1230)
T 1u6g_C 368 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS 447 (1230)
T ss_dssp HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC
Confidence 234567889999999999999999999999998876542 2344667777777789999
Q ss_pred HHHHHHHHHHHHHhhhhhCH--HHHHHhHHHHHHHhhCCCCH--HHHHHHHHhhHHHHhhhchhH---HHhhHHHHHHHh
Q 009359 333 QHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVEL 405 (536)
Q Consensus 333 ~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~ 405 (536)
|++|.+++..++.++...+. ..+.+.++|.+...++|..+ .+|..++..++.+....+.+. +.+.++|.+...
T Consensus 448 ~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~ 527 (1230)
T 1u6g_C 448 VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC 527 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHH
Confidence 99999999999999876542 23567899999999999875 899999999999988777663 446789999999
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhch---------hhHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHhChhhhh-
Q 009359 406 AEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWAM- 473 (536)
Q Consensus 406 ~~~~~~~~R~~a~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~- 473 (536)
++|+++++|..++.+++.+++.+|+ ..+.+.++|.+...+ .|.++.||..|+.+++.++...|..+..
T Consensus 528 l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~ 607 (1230)
T 1u6g_C 528 VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 607 (1230)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTH
T ss_pred HcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 9999999999999999999988876 235678999999988 7889999999999999999998876432
Q ss_pred -hchhHHHHhhccCCChHHHHHHHHHHHHHhhhhC---hHHHHHhHHHHHHhhcCCccchhhhcc
Q 009359 474 -QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 474 -~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
..+++.+.+.+.++ ..|..++.+++.++...+ .+.+.+.++|.+...+.|++..+|..|
T Consensus 608 ~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a 670 (1230)
T 1u6g_C 608 LPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGT 670 (1230)
T ss_dssp HHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 55666666655543 478899999999886543 244678999999999999998888754
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.7e-33 Score=299.88 Aligned_cols=521 Identities=12% Similarity=0.104 Sum_probs=415.3
Q ss_pred HHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCC-chHHHHHHHHHHhchhcccCCc-----cch
Q 009359 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGL-----EYA 84 (536)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~a~~~l~~l~~~~~~~-----~~~ 84 (536)
..+++.+.++++.+|..+...++.++....|...+++++|.+.+ +.++ ++.+|..+..+++.+.+..+.. .+.
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 177 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 46778899999999999999999999887776568899999988 6666 8899999999999888765432 356
Q ss_pred hccchHHHhhhcCc--chHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCCh
Q 009359 85 NVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE 158 (536)
Q Consensus 85 ~~ll~~l~~l~~~~--~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~ 158 (536)
..+++.+...+.++ +..||..+++++..+...+.. ......+++.+.....++++.+|..++.++..+....+.
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777776 789999999999998665432 122356788888888888889999999999888765443
Q ss_pred H---HHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh-------------------hhhHHHHHHHHHHhhcC--
Q 009359 159 A---LKT-ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-------------------AHLKSEIMSIFEELTQD-- 213 (536)
Q Consensus 159 ~---~~~-~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-------------------~~~~~~l~~~l~~~l~d-- 213 (536)
. +.. .+++.+...+.|.+..+|..+++.+..++..... ..+...++|.+...+.+
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 444 7888888899999999999999999999876421 12346788888887763
Q ss_pred -----cchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHH
Q 009359 214 -----DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAY 285 (536)
Q Consensus 214 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l 285 (536)
+++.+|..+..++..++..+++ ...+.+++.+.+.+++.+|.+|.+++.+++.++...+.+. ..+.++|.+
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3468999999999999988874 4567899999999999999999999999999885443111 234688899
Q ss_pred HHhcCCCcHHHHHHHHHhHHHHHhhcCh----HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH------HHH
Q 009359 286 VRLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK------DAT 355 (536)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------~~~ 355 (536)
...+.|+++.||.+++.+++.++..++. ..+.+.++|.+...+.|+ +.+|..++.++..++..++. ..+
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 9999999999999999999999987654 345678888888888776 99999999999999887651 234
Q ss_pred HHhHHHHHHHhhCC--CCHHHHHHHHHhhHHHHhhhchhH--HHhhHHHHHHHhhcC---------------CChHHHHH
Q 009359 356 IEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED---------------RHWRVRLA 416 (536)
Q Consensus 356 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~~---------------~~~~~R~~ 416 (536)
.+.+++.+...+++ .++.+|..++.+++.++...+.+. +...++|.+.+.+.+ ....+|..
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 57788888899984 447999999999999998877542 234556666555442 24568889
Q ss_pred HHHHHHHHHhhhchhh--HHHHHHHHHHHHhcCcch-HHHHHHHHHHHHHHHHhChhhh--hhchhHHHHhhccCCChHH
Q 009359 417 IIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLY 491 (536)
Q Consensus 417 a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~~ 491 (536)
++.+++.++..+|... +.+.+++.+...+++... .||..++.+++.++...|..+. ...++|.+...++++++.+
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v 655 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV 655 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHH
Confidence 9999999999888753 457788999999988877 8999999999999999887643 3678899988888899999
Q ss_pred HHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCCcc--chhhhcc
Q 009359 492 RMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDSE--SVAVTYS 534 (536)
Q Consensus 492 r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~--~~vr~~a 534 (536)
|..++.+++.++..+|..+ +.+.++|.+...+.|+. +.+|..|
T Consensus 656 r~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~ 702 (861)
T 2bpt_A 656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAV 702 (861)
T ss_dssp HHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHH
Confidence 9999999999999988654 56788999999888864 6677643
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=4.7e-33 Score=308.73 Aligned_cols=517 Identities=12% Similarity=0.166 Sum_probs=409.3
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhC---hHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccch
Q 009359 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYA 84 (536)
Q Consensus 9 ~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 84 (536)
+.+..+++++.|+|+++|.+|...|......-. .+...+.+++.+.+ +.|+++.+|.+++.+++.+++.++. .+.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 668999999999999999999888776532110 11223456666655 6788999999999999999886654 566
Q ss_pred hccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChh--------hHHhhHHHHHHHHhcC-cccchhhHHHhhhhhhccC
Q 009359 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--------DVVEHFIPLVKRLAAG-EWFTARVSSCGLFHVAYPS 155 (536)
Q Consensus 85 ~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~--------~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~ 155 (536)
..+++.+...+.|+++.+|..++.+++.++..+++. ..++.++|.+.....+ +++.+|..+...+..+...
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 778887777778888899999999999999988764 3577889988888874 6788999999999888754
Q ss_pred CCh---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCc-chHHHHHHHHhHHHhhc
Q 009359 156 APE---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGK 231 (536)
Q Consensus 156 ~~~---~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~ 231 (536)
.+. .+.+.+++.+...+.|+++.||..|+.+++.++...+... .+.++|.+.+.+.+. ++.+|..++++++.++.
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 433 3678899999999999999999999999999998765433 344666666665544 35788899999999998
Q ss_pred ccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcC-----------------
Q 009359 232 LLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLR----------------- 290 (536)
Q Consensus 232 ~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~----------------- 290 (536)
..++ ..+.+.++|.+.+.++|.++.+|..++.+++.++..++.+. +.+.++|.+++.+.
T Consensus 244 ~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~ 323 (1230)
T 1u6g_C 244 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323 (1230)
T ss_dssp HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 8775 23567899999999999999999999999999999888754 34567777766553
Q ss_pred --------------------CCcHHHHHHHHHhHHHHHhhcCh--HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhh
Q 009359 291 --------------------DNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (536)
Q Consensus 291 --------------------d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 348 (536)
|..+.||.+|+.++..++...+. ..+.+.++|.+...+.|.++.||..++.++..+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 11256899999999999986654 45567888888888889999999999999988876
Q ss_pred hhCH---------------------HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch--hHHHhhHHHHHHHh
Q 009359 349 ILGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVEL 405 (536)
Q Consensus 349 ~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~ 405 (536)
..+. +.+.+.++|.+...++|+++.+|..++..++.++...+. ....+.++|.+.+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred HhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHH
Confidence 5532 234467788888889999999999999999999887542 12347889999999
Q ss_pred hcCCCh--HHHHHHHHHHHHHHhhhchhh---HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh-------h--h
Q 009359 406 AEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-------D--W 471 (536)
Q Consensus 406 ~~~~~~--~~R~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-------~--~ 471 (536)
++|+++ .+|..++..+..+....|++. +.+.++|.+...+.|+++.||..++.+++.+++.+|+ . .
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 563 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 563 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 999876 899999999999988777764 3456889999999999999999999999999999876 1 2
Q ss_pred hhhchhHHHHhhc--cCCChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCCcc
Q 009359 472 AMQHIVPQVLEMI--NNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDSE 527 (536)
Q Consensus 472 ~~~~i~~~l~~~~--~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~ 527 (536)
..+.++|.+.+.+ .|++..+|..++.+++.++...|... +.+.++|.+...+.++.
T Consensus 564 ~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~ 623 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI 623 (1230)
T ss_dssp HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch
Confidence 3467888888877 77889999999999999999888654 45778888887777653
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=3.5e-30 Score=277.30 Aligned_cols=514 Identities=16% Similarity=0.188 Sum_probs=398.4
Q ss_pred HHHHHHHhcCh--hHHHHHHHhhhHHHHHHhhChHh---hhhcccccccc-ccCC--chHHHHHHHHHHhchhcccCCc-
Q 009359 11 IAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGL- 81 (536)
Q Consensus 11 i~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~-~~d~--~~~vr~~a~~~l~~l~~~~~~~- 81 (536)
+..++..+.++ ++.+|..|++.+..++...+++. ..+.+++.+.. +.++ ++.+|..+.++++.++..++..
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888898 99999999999999988766532 23455666655 5555 6899999999999887654421
Q ss_pred ---cchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHh-hHHHHHHHHhcCcccchhhHHHhhhhhhccC
Q 009359 82 ---EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVE-HFIPLVKRLAAGEWFTARVSSCGLFHVAYPS 155 (536)
Q Consensus 82 ---~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~ 155 (536)
.....+++.+.....+++..+|..+++++..++...++. .... .+++.+.....+++..+|..++..+..+...
T Consensus 210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 011246677777778888999999999999999876541 2223 6777777777777778898888777666432
Q ss_pred C--------------------C-h---HHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 009359 156 A--------------------P-E---ALKTELRTIYRQLCQ-------DDMPMVRRSAATNLGKFAATVEAAHLKSEIM 204 (536)
Q Consensus 156 ~--------------------~-~---~~~~~l~~~l~~ll~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~ 204 (536)
. . . .....+++.+...+. |++|.+|.+|+.+++.++...+. ...+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l 368 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL 368 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHH
Confidence 1 0 1 133567777777663 45799999999999999998874 5567899
Q ss_pred HHHHHhhcCcchHHHHHHHHhHHHhhcccCch---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----cc
Q 009359 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT 277 (536)
Q Consensus 205 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~----~~ 277 (536)
|.+...++|++|.+|..|+.+++.++...+++ .+...++|.+...++|+++.||..++.+++.++..++.. .+
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 99999999999999999999999999887732 356778999999999999999999999999999987642 34
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC----------------hHHHHHhhhHHHHHhccCC---CHHHHHH
Q 009359 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------------PELAIQHILPCVKELSSDS---SQHVRSA 338 (536)
Q Consensus 278 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~----------------~~~~~~~i~~~l~~l~~d~---~~~vr~~ 338 (536)
.+.+++.+...+.|+ +.||..++.++..++...+ -..+.+.++|.+...+.+. ++.+|..
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 567889999999886 8999999999999988654 1134577888888777654 4689999
Q ss_pred HHHHHHHhhhhhCHH--HHHHhHHHHHHHhhC-----------CCC----HHHHHHHHHhhHHHHhhhc-hh--HHHhhH
Q 009359 339 LATVIMGMAPILGKD--ATIEQLLPIFLSLLK-----------DEF----PDVRLNIISKLDQVNQVIG-ID--LLSQSL 398 (536)
Q Consensus 339 a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~-----------d~~----~~vr~~a~~~l~~l~~~~~-~~--~~~~~i 398 (536)
+.++++.++...|.+ .+...++|.+...+. +.+ +++|..++.+++.++..+| .. .+.+.+
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 607 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV 607 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence 999999998877643 234566777666654 222 5678999999999998888 33 234678
Q ss_pred HHHHHHhhcCCC--hHHHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHhChhhh-
Q 009359 399 LPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDWA- 472 (536)
Q Consensus 399 ~~~l~~~~~~~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~- 472 (536)
+|.+...+++.. +.+|..++.+++.++...|..+ +.+.++|.+...+.+. ++.||..++.+++.++...|..+.
T Consensus 608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 687 (876)
T 1qgr_A 608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP 687 (876)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888888888764 6899999999999998887654 3477889999999887 889999999999999998886533
Q ss_pred -hhchhHHHHhhccC--CChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcCCc
Q 009359 473 -MQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDS 526 (536)
Q Consensus 473 -~~~i~~~l~~~~~d--~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~ 526 (536)
.+.+++.+.+.+++ .+..+|..++.+++.++..+|.++ +.+.++|.+...++++
T Consensus 688 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~ 746 (876)
T 1qgr_A 688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQ 746 (876)
T ss_dssp HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhcc
Confidence 36788888887776 467899999999999999988775 5778899998888755
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=3.1e-30 Score=277.70 Aligned_cols=523 Identities=13% Similarity=0.151 Sum_probs=384.1
Q ss_pred HHHHHHHhcCh--hHHHHHHHhhhHHHHHHhhChHh----hhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCc--
Q 009359 11 IAVLIDELKND--DIQLRLNSIRRLSTIARALGEER----TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGL-- 81 (536)
Q Consensus 11 i~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~-- 81 (536)
+..++..+.++ ++.+|..|++.+..++..++... ..+.+++.+.. +.++++++|..+++++..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34466777777 68999999999988765443221 11346666666 66778999999999999887754421
Q ss_pred cchh-ccchHHHhhhcCcchHHHHHHHHHHHHHHhhcCh-----------------------hhHHhhHHHHHHHHhc--
Q 009359 82 EYAN-VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-----------------------QDVVEHFIPLVKRLAA-- 135 (536)
Q Consensus 82 ~~~~-~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~-----------------------~~~~~~l~~~l~~l~~-- 135 (536)
.+.. .+++.+.....+.++.+|..+++.+..+++.... ......++|.+.....
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 333 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence 2333 6667666666788899999999999888764210 0012345555544432
Q ss_pred -----CcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHH
Q 009359 136 -----GEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIF 207 (536)
Q Consensus 136 -----~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l 207 (536)
++++.+|..+..++..+....++...+.+++.+...++|++|.+|.+++.+++.++...+++ .+.+.++|.+
T Consensus 334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l 413 (876)
T 1qgr_A 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (876)
T ss_dssp CSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34678999999999988877776677889999999999999999999999999998755422 3557789999
Q ss_pred HHhhcCcchHHHHHHHHhHHHhhcccCc----hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC-------C--
Q 009359 208 EELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG-------P-- 274 (536)
Q Consensus 208 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~-------~-- 274 (536)
...++|+++.||..|+.+++.++...++ ..+...+++.+...+.|+ +.||..++.+++.++...+ +
T Consensus 414 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~ 492 (876)
T 1qgr_A 414 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQE 492 (876)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 9999999999999999999999988764 346778889999988885 8999999999999998765 1
Q ss_pred -------CccccchHHHHHHhcCCC---cHHHHHH---------------------------------------------
Q 009359 275 -------EPTRSDVVPAYVRLLRDN---EAEVRIA--------------------------------------------- 299 (536)
Q Consensus 275 -------~~~~~~l~~~l~~ll~d~---~~~vr~~--------------------------------------------- 299 (536)
..+.+.++|.+...+.+. +..+|..
T Consensus 493 ~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 572 (876)
T 1qgr_A 493 EPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTS 572 (876)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTT
T ss_pred cccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChh
Confidence 123346777777777653 2344444
Q ss_pred -----------HHHhHHHHHhhcC-hH--HHHHhhhHHHHHhccCCC--HHHHHHHHHHHHHhhhhhCHH--HHHHhHHH
Q 009359 300 -----------AAGKVTKICRILN-PE--LAIQHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKD--ATIEQLLP 361 (536)
Q Consensus 300 -----------a~~~l~~~~~~~~-~~--~~~~~i~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~ 361 (536)
++.+++.++..++ .. .+.+.++|.+...+++.+ +.+|..++.+++.++...|.. .+.+.++|
T Consensus 573 d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 652 (876)
T 1qgr_A 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKP 652 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444444444 22 223556666666666654 578999999999998876643 24567889
Q ss_pred HHHHhhCCC-CHHHHHHHHHhhHHHHhhhchh--HHHhhHHHHHHHhhcC--CChHHHHHHHHHHHHHHhhhchhh--HH
Q 009359 362 IFLSLLKDE-FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF--FD 434 (536)
Q Consensus 362 ~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~~--~~~~~R~~a~~~l~~l~~~~~~~~--~~ 434 (536)
.+...+.+. ++.+|..++.+++.++..+|.. .+.+.+++.+.+.+++ .+..+|..++.+++.++..+|..+ +.
T Consensus 653 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l 732 (876)
T 1qgr_A 653 FLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL 732 (876)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH
Confidence 999999987 8999999999999999888753 2246788888888876 467899999999999999888764 45
Q ss_pred HHHHHHHHHHhcCcc-----------hHHHHHHHHHHHHHHHHhChh--------hhh----hchhHHHHhhccCC--Ch
Q 009359 435 DKLGALCMQWLKDKV-----------YSIRDAAANNVKRLAEEFGPD--------WAM----QHIVPQVLEMINNP--HY 489 (536)
Q Consensus 435 ~~l~~~l~~~l~d~~-----------~~Vr~~a~~~l~~l~~~~~~~--------~~~----~~i~~~l~~~~~d~--~~ 489 (536)
+.++|.+.+.+.++. ..+|..+..++..++..+|.. ... +.+++.+.....|+ +.
T Consensus 733 ~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 812 (876)
T 1qgr_A 733 EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTD 812 (876)
T ss_dssp HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCH
T ss_pred HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 778888888876542 379999999999998887642 111 23334444444676 77
Q ss_pred HHHHHHHHHHHHHhhhhCh-HH--H-HHhHHHHHHh-hcCCccchhhhcc
Q 009359 490 LYRMTILQAISLLAPVMGS-EI--T-CSQLLPVVIN-ASKDSESVAVTYS 534 (536)
Q Consensus 490 ~~r~~~~~~l~~l~~~~~~-~~--~-~~~~~~~l~~-~l~d~~~~vr~~a 534 (536)
.+|..++.+++.++...|. .. + .+.+++.++. ++.|+.+.+|+.|
T Consensus 813 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a 862 (876)
T 1qgr_A 813 GVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHH
Confidence 9999999999999999987 43 2 4567887777 9999999999876
No 11
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.95 E-value=5.2e-26 Score=231.39 Aligned_cols=499 Identities=15% Similarity=0.117 Sum_probs=361.2
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhcc
Q 009359 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (536)
Q Consensus 9 ~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 87 (536)
..+..+.+.+++++...|..+++.+-.+ ...|.+. ..+.+.+.+ +.+++..+|+.+...+..+++. .++....+
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~ 87 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMA 87 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTT
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHH
Confidence 3588999999999999999998877654 3455432 334444444 7788999999998888877653 23333444
Q ss_pred chHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHH-HHHHH
Q 009359 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALK-TELRT 166 (536)
Q Consensus 88 l~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~-~~l~~ 166 (536)
.+.+...++++++.+|..|+.+++.+. .+...+.+.|.+.++..|+++.+|..|+.++..++...++... ..+++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~ 163 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLD 163 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHH
Confidence 566777788999999999998888775 3446667888888889999999999999999999885544332 36889
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhH
Q 009359 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (536)
Q Consensus 167 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (536)
.+..+++|+++.||..|+.+|+.++...+.. ......++.+.+.+.+.++..+...++.++.++.. +......++
T Consensus 164 ~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l 241 (591)
T 2vgl_B 164 SLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSIC 241 (591)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHH
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHH
Confidence 9999999999999999999999987653311 12234556666666777888888888877666532 123356788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCCcc---ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHH
Q 009359 244 PVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPT---RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (536)
Q Consensus 244 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~--~~~~~---~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (536)
+.+..++++.++.|+..+++++..+.... ..+.. ...+.+.+..++ ++++++|..|+.+++.+....+ +.+..
T Consensus 242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~ 319 (591)
T 2vgl_B 242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQ 319 (591)
T ss_dssp HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHH
Confidence 89999999999999999999998876433 11211 124556666665 4789999999999999987643 22212
Q ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhH
Q 009359 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (536)
Q Consensus 319 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 398 (536)
.+ ..+....+|+ +.+|..+++.+..++..-+ .+.+++.+...+.+.+.++|..++.+++.++..+.. ..+.+
T Consensus 320 ~~-~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~ 391 (591)
T 2vgl_B 320 EI-KVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERC 391 (591)
T ss_dssp CT-TTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHH
T ss_pred HH-HhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHH
Confidence 11 1222223444 9999999999999876433 346778888899999999999999999999877643 23667
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHhChhhhhhchh
Q 009359 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 477 (536)
Q Consensus 399 ~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~ 477 (536)
++.+.+++.+....++..++.++..+....+.. ...+++.+...+. +..+.+|..+++++|+++..... ...++
T Consensus 392 v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l 466 (591)
T 2vgl_B 392 VSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELL 466 (591)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHH
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHH
Confidence 888899999999889998888888887654431 2334555666665 56788999999999998766533 24566
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCC-ccchhhhcc
Q 009359 478 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-SESVAVTYS 534 (536)
Q Consensus 478 ~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~vr~~a 534 (536)
..+.+.+.+.+..+|..++.++.++....+... .+.+...+..+..| .++.||+=|
T Consensus 467 ~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~ll~~~~~d~~d~evrdRA 523 (591)
T 2vgl_B 467 ESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQDSDNPDLRDRG 523 (591)
T ss_dssp HHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHhhhcCCChHHHHHH
Confidence 666666667789999999999999988766432 23333344444566 566887644
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=1.3e-24 Score=216.16 Aligned_cols=313 Identities=17% Similarity=0.144 Sum_probs=224.3
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCc--chHHHHHHHHhHHHhhcc
Q 009359 155 SAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD--QDSVRLLAVEGCGALGKL 232 (536)
Q Consensus 155 ~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~ 232 (536)
.++++....+...+...+.++++.+ ..++.+++.++....+...++.++|.+.+.++++ ++.+|..++.+++.+++.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 3455566677777777788887788 8888888888887655445577888888888887 788888888888888875
Q ss_pred cCc---hhhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCCcHHHHHHHHHh
Q 009359 233 LEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGK 303 (536)
Q Consensus 233 ~~~---~~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~ll~d~~~~vr~~a~~~ 303 (536)
+.. ..+.+.+++.+...++|. ++.||..++++++.+...++. ....+.+++.+...+.++++++|..++.+
T Consensus 161 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~ 240 (462)
T 1ibr_B 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240 (462)
T ss_dssp SCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 522 234566778888888887 788888888888876533221 11112356777777788888888888888
Q ss_pred HHHHHhhcChH--HHHH-hhhHHHHHhccCCCHHHHHHHHHHHHHhhhhh-------------------C----HHHHHH
Q 009359 304 VTKICRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALATVIMGMAPIL-------------------G----KDATIE 357 (536)
Q Consensus 304 l~~~~~~~~~~--~~~~-~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-------------------~----~~~~~~ 357 (536)
+..++...+.. .... .+++.+.....|.+..+|..+++.+..++... . .+.+.+
T Consensus 241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 88888765432 2234 66676666677888888888888887776532 0 011235
Q ss_pred hHHHHHHHhhCC-------CCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch
Q 009359 358 QLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (536)
Q Consensus 358 ~l~~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~ 430 (536)
.++|.++..+.+ +++.+|..++.+++.++..+| +...+.++|.+...+++++|++|.+++.+++.++...++
T Consensus 321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~ 399 (462)
T 1ibr_B 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (462)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence 677777777642 346788888888888888887 345577888888888888888888888888888765542
Q ss_pred hh---HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh
Q 009359 431 GF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 431 ~~---~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
+. ..+.++|.+...+.|+++.||..|+++++.++..+++
T Consensus 400 ~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 21 2355777788888888888888888888888877665
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=4e-24 Score=212.70 Aligned_cols=377 Identities=13% Similarity=0.073 Sum_probs=223.8
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccC-----------
Q 009359 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVG----------- 79 (536)
Q Consensus 11 i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~----------- 79 (536)
|..++.++.++|+++|.+|.+.|.++...- .......++..+.+ .+.++.+|..++..|.++.+.--
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 678899999999999999999998864321 12223334444432 23478999999999998864210
Q ss_pred ---CccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCc--ccchhhHHHhhhhhhcc
Q 009359 80 ---GLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE--WFTARVSSCGLFHVAYP 154 (536)
Q Consensus 80 ---~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~ 154 (536)
+++....+...+...+.++++.+ ..+..+++.++....+...++.++|.+.....++ ++.+|..+..++..+..
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 11112223333334445555566 6777777777766433334566777766666665 66677777777776665
Q ss_pred CCC----hHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcCcchHHHHHHHH
Q 009359 155 SAP----EALKTELRTIYRQLCQDD--MPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQDSVRLLAVE 224 (536)
Q Consensus 155 ~~~----~~~~~~l~~~l~~ll~d~--~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 224 (536)
... ..+.+.+++.+..+++|+ ++.||..|+++++.+...+.. ..+.+.+++.+.+.+.++++.+|..+++
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~ 239 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 432 235566777777777776 677777777777775432221 1123445666666677777777777777
Q ss_pred hHHHhhcccCc--hhhhh-hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------C-----------C-C-c---cc
Q 009359 225 GCGALGKLLEP--QDCVA-HILPVIVNFSQDKSWRVRYMVANQLYELCEAV-------G-----------P-E-P---TR 278 (536)
Q Consensus 225 ~l~~l~~~~~~--~~~~~-~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~-------~-----------~-~-~---~~ 278 (536)
++..++...++ ..+.. .+++.+...++|.+..||..++..+..++... + . . . +.
T Consensus 240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (462)
T 1ibr_B 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL 319 (462)
T ss_dssp HHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh
Confidence 77777765544 13344 66666666667777777777777777776542 0 0 0 0 01
Q ss_pred cchHHHHHHhcCC-------CcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC
Q 009359 279 SDVVPAYVRLLRD-------NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 351 (536)
Q Consensus 279 ~~l~~~l~~ll~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 351 (536)
..++|.+.+.+.+ .++.+|.+|..+++.++..++ +.+.+.++|.+...+.+++|++|.+++.+++.++...+
T Consensus 320 ~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence 2345555554432 234566666666666666555 23345555666555566666666666666666654332
Q ss_pred HH---HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch
Q 009359 352 KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (536)
Q Consensus 352 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 391 (536)
.+ ...+.++|.+...++|+++.||..|+.+++.++..++.
T Consensus 399 ~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 11 12244555555555555556666666666555555443
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.94 E-value=2.3e-23 Score=211.94 Aligned_cols=476 Identities=13% Similarity=0.113 Sum_probs=347.4
Q ss_pred CCCCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccc-cccCCchHHHHHHHHHHhchhcccCCcc
Q 009359 4 IDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS-ENNDDDDEVLLAMAEELGVFIPYVGGLE 82 (536)
Q Consensus 4 ~~~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 82 (536)
|.+.-.-+..++..+.+++..+|+.+.-.+..++.. .++.. ..+++.+. ++.|+++.+|..|..+++.+. .++
T Consensus 44 G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~ 117 (591)
T 2vgl_B 44 GKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDK 117 (591)
T ss_dssp TCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGG
T ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHH
Confidence 444333466778889999999999988888777653 23332 22333333 488999999999999998873 466
Q ss_pred chhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH---
Q 009359 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--- 159 (536)
Q Consensus 83 ~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--- 159 (536)
..+.+.+.+..++.|+++.||+.|+.++.++....+.......++|.+..+..|+++.+|..|+.++..+....++.
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 77888888888889999999999999999999855432112357789999999999999999999999988765421
Q ss_pred -HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhccc--Cch
Q 009359 160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL--EPQ 236 (536)
Q Consensus 160 -~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~ 236 (536)
.....+..+...+.+.++..+...++.++.++.. .+.....+++.+...+++.++.|+..|+.++..+.... .++
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~ 275 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSD 275 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTB
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHH
Confidence 2344555566666678888888888877665421 12334678888889999999999999999999988654 121
Q ss_pred ---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh
Q 009359 237 ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (536)
Q Consensus 237 ---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (536)
.....+.+.+..+.+ +++.+|..++.+++.+....+.. ..+++- .+....+|+ ..||..++..+..++..-
T Consensus 276 ~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~-~~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~-- 349 (591)
T 2vgl_B 276 YYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEI-LKQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQA-- 349 (591)
T ss_dssp SHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCST-TTTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSS--
T ss_pred HHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHH-HHHHHH-hheeccCCh-HHHHHHHHHHHHHHCChh--
Confidence 123456666666654 78999999999999998864432 222222 222333555 899999998888775421
Q ss_pred HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH
Q 009359 314 ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (536)
Q Consensus 314 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (536)
-.+.+++.+...+.+.++.+|..++++++.++..++. ....+++.+..++.+....++..++..+..+......
T Consensus 350 --nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-- 423 (591)
T 2vgl_B 350 --NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-- 423 (591)
T ss_dssp --THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS--
T ss_pred --hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc--
Confidence 2356777777888899999999999999999987643 2466789999999999999999999888888765432
Q ss_pred HHhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhh
Q 009359 394 LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (536)
Q Consensus 394 ~~~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 472 (536)
..+.+++.+.+.++ .....+|..++++++..+..... .+.++..+.+.+.+.++.||..++.++.++....+..
T Consensus 424 ~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-- 498 (591)
T 2vgl_B 424 KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-- 498 (591)
T ss_dssp SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST--
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH--
Confidence 22556777777776 45688999999999988765543 3345566666677888999999999999998765432
Q ss_pred hhchhHHHHhh-ccC-CChHHHHHHHHHHHHHhh
Q 009359 473 MQHIVPQVLEM-INN-PHYLYRMTILQAISLLAP 504 (536)
Q Consensus 473 ~~~i~~~l~~~-~~d-~~~~~r~~~~~~l~~l~~ 504 (536)
....+..+.+. ..| .|.++|..|...+.-+..
T Consensus 499 ~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 499 TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 22344444444 345 688999999998877643
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=3.3e-22 Score=209.36 Aligned_cols=512 Identities=11% Similarity=0.032 Sum_probs=340.1
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCcc-c--hhc
Q 009359 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLE-Y--ANV 86 (536)
Q Consensus 11 i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~-~--~~~ 86 (536)
+..++..|.+++...|..+++.+.......-. .-.+|.+.. +.++++.||..++.+|++++....... . ...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 57889999999999999888777654322111 223444443 457889999999999999876322111 0 123
Q ss_pred cchHHHhhh-cCcchHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH---H
Q 009359 87 LLPPLETLC-TVEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---L 160 (536)
Q Consensus 87 ll~~l~~l~-~~~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~ 160 (536)
.++.|..++ .++++.+|..|+.+|..++..-.. .......+|.+..+..+++..+|..++.++..+....... .
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 445444444 355889999999999998764322 1122347788888888888889999999999887653321 2
Q ss_pred -HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchH-HHHHHHHhHHHhhcccCc
Q 009359 161 -KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDS-VRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 161 -~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~ 235 (536)
....++.+..++.++++.++..++.+|..++..... .......++.+..++.+.++. .+..+..++..++..-..
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 352 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence 346788999999999999999999999987742111 112224567777788776554 455677777777642211
Q ss_pred --hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh
Q 009359 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (536)
Q Consensus 236 --~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (536)
......+++.+..++.+.+..++..++.+|.+++...........++|.+.+++++.++++|..|+.++..++..-..
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 122345789999999999999999999999999876544333457899999999999999999999999999763211
Q ss_pred H---HHHHhhhHHHHHhccC-CC-HHHHHHHHHHHHHhhhhhCH------HHHHHhHHHHHHHhhCCCCH-HHHHHHHHh
Q 009359 314 E---LAIQHILPCVKELSSD-SS-QHVRSALATVIMGMAPILGK------DATIEQLLPIFLSLLKDEFP-DVRLNIISK 381 (536)
Q Consensus 314 ~---~~~~~i~~~l~~l~~d-~~-~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~ 381 (536)
. ......++.+..++.+ .+ ..+|..++.+++.++...+. .......+|.+..++.+++. .+|..++.+
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 1 1113345666666654 33 48999999999999754332 11234568999999998774 999999999
Q ss_pred hHHHHhhhch--hHHHhhHHHHHHHhhcCCCh----------------------HHHHHHHHHHHHHHhhhchh--hHHH
Q 009359 382 LDQVNQVIGI--DLLSQSLLPAIVELAEDRHW----------------------RVRLAIIEYIPLLASQLGVG--FFDD 435 (536)
Q Consensus 382 l~~l~~~~~~--~~~~~~i~~~l~~~~~~~~~----------------------~~R~~a~~~l~~l~~~~~~~--~~~~ 435 (536)
+++++..-.. ......++|.|.+++.+.++ .++..++.+|..++...... ....
T Consensus 513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~ 592 (780)
T 2z6g_A 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592 (780)
T ss_dssp HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHC
Confidence 9999742111 11124567777777765433 35566777777665321111 1123
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhC--hhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHH
Q 009359 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG--PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS 513 (536)
Q Consensus 436 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~ 513 (536)
..+|.+..++.++++.||..++.+|+.+...-. ........++.|.+++++++..+|..|..++..++..-+......
T Consensus 593 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~ 672 (780)
T 2z6g_A 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 672 (780)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhcc
Confidence 467889999999999999999999999863210 111234578899999999999999999999999988655332111
Q ss_pred hHHHHHHhhcCCc
Q 009359 514 QLLPVVINASKDS 526 (536)
Q Consensus 514 ~~~~~l~~~l~d~ 526 (536)
.-...+.+++.+.
T Consensus 673 l~~~ll~~l~~~~ 685 (780)
T 2z6g_A 673 LSVELTSSLFRTE 685 (780)
T ss_dssp HHHHHHHHC----
T ss_pred ccHHHHHHHHhCC
Confidence 1233444544443
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=4.2e-22 Score=197.37 Aligned_cols=341 Identities=12% Similarity=0.053 Sum_probs=258.1
Q ss_pred chHHHhhhcCcchHHHHHHHHHHHHHHhh-cCh--hh-HHh-hHHHHHHHHhcCc-ccchhhHHHhhhhhhccCCChH--
Q 009359 88 LPPLETLCTVEETCVRDKAVESLCRIGSQ-MRE--QD-VVE-HFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEA-- 159 (536)
Q Consensus 88 l~~l~~l~~~~~~~vr~~a~~~l~~~~~~-~~~--~~-~~~-~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-- 159 (536)
++.+...++++++.+|..|+.++..++.. ..+ +. +.. .++|.+..+..++ ++.+|..++.++..+....++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 56666666778888999999999887642 111 22 233 5777777777766 7889999999998887654332
Q ss_pred --HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhccc
Q 009359 160 --LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLL 233 (536)
Q Consensus 160 --~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 233 (536)
....+++.+..+++++++.+|..|+.+|++++...+. ......++|.+.+++.+ .++.+|..++.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 2245889999999999999999999999999864321 11223468888888885 78999999999999999654
Q ss_pred -C--chhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhHHHH
Q 009359 234 -E--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307 (536)
Q Consensus 234 -~--~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~ 307 (536)
+ .......++|.+.+++.+.++.+|..++.+|+.++..... ......++|.+..++.++++.+|..|+.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 2 1334578999999999999999999999999998742110 111235889999999999999999999999999
Q ss_pred HhhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCCHHHHHHHHHh
Q 009359 308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (536)
Q Consensus 308 ~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (536)
+...+.. .....++|.+..++.++++.+|..++.+++.++..... ......++|.+...++++++.+|..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8643221 12235788888999999999999999999999853211 11225788999999999999999999999
Q ss_pred hHHHHhhhchhH----HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh
Q 009359 382 LDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (536)
Q Consensus 382 l~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~ 428 (536)
++.++....++. ....++|.+..+++++++.+|..++.++..++...
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999976533322 22457888899999889999999999998887643
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=2.7e-22 Score=198.70 Aligned_cols=370 Identities=11% Similarity=0.065 Sum_probs=281.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---h-hhHH-HHHHHHHHhhcCc-chHHHHHHHHhHHHhhcccCc---
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---A-HLKS-EIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP--- 235 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~-~~~~-~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~--- 235 (536)
++.+.+.++++++.+|..|+.+|..+...... . .... .++|.+.++++++ ++.+|..|+.++..++...++
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 56677777888999999999999997652111 1 1222 5889999999888 889999999999998864332
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC-CcHHHHHHHHHhHHHHHhhc
Q 009359 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRIL 311 (536)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~~ 311 (536)
......++|.+.++++++++.+|..++.+|++++.... .......+++.+.+++.+ .++.+|..|+.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 11235689999999999999999999999999885311 011123578999999985 78999999999999998643
Q ss_pred Ch---HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHH
Q 009359 312 NP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (536)
Q Consensus 312 ~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (536)
++ ......++|.+..++.+.++.+|..++.++..++..... ......++|.+..++.++++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 223367788888889999999999999999999864221 112346789999999999999999999999998
Q ss_pred Hhhhchh---HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 009359 386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANN 459 (536)
Q Consensus 386 ~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~ 459 (536)
+...... .....++|.+..++.++++.+|..++.+++.++..... ......++|.+..++.|+++.||..|+.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7543211 12246889999999999999999999999998753211 11224678899999999999999999999
Q ss_pred HHHHHHHhChhh----hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChH---------HHHHhH-----HHHHHh
Q 009359 460 VKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---------ITCSQL-----LPVVIN 521 (536)
Q Consensus 460 l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~---------~~~~~~-----~~~l~~ 521 (536)
++.++....++. ....++|.|.++++++++.+|..+++++..++...+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999987644332 23578999999999999999999999999998754321 122333 677888
Q ss_pred hcCCccchhhhcc
Q 009359 522 ASKDSESVAVTYS 534 (536)
Q Consensus 522 ~l~d~~~~vr~~a 534 (536)
+.+++.+.|++.|
T Consensus 422 l~~~~~~~v~~~a 434 (450)
T 2jdq_A 422 LQSHENQEIYQKA 434 (450)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHH
Confidence 8888888888765
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=2.5e-22 Score=203.27 Aligned_cols=464 Identities=12% Similarity=0.062 Sum_probs=316.9
Q ss_pred HhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChh-hHH--hhHHHHHHH-HhcCcccchhhHHH
Q 009359 71 LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ-DVV--EHFIPLVKR-LAAGEWFTARVSSC 146 (536)
Q Consensus 71 l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~--~~l~~~l~~-l~~~~~~~~r~~a~ 146 (536)
++++.++.++..+....+|.|..++.++++.+|..|+.+|..++..-+.. ... ...++.+.+ +..++++.+|..++
T Consensus 2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~ 81 (529)
T 1jdh_A 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81 (529)
T ss_dssp CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHH
Confidence 45666666766677777888888888999999999999999998754321 111 123444444 44455678888888
Q ss_pred hhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--h-hhHHHHHHHHHHhhcCcchHHHH
Q 009359 147 GLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--A-HLKSEIMSIFEELTQDDQDSVRL 220 (536)
Q Consensus 147 ~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~ 220 (536)
..+..+....... .....++.+..+++++++.+|..|+.+|.+++...+. . ......+|.+.+++.++++.++.
T Consensus 82 ~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~ 161 (529)
T 1jdh_A 82 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161 (529)
T ss_dssp HHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHH
T ss_pred HHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHH
Confidence 8888875542111 2234778999999999999999999999999876332 1 12356889999999999999999
Q ss_pred HHHHhHHHhhcccCc---hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCCcH
Q 009359 221 LAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEA 294 (536)
Q Consensus 221 ~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~ 294 (536)
.+..++..++..-++ .......++.+..++.+. ...++..++.++..++..-.. .......++.+..++.+.++
T Consensus 162 ~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 241 (529)
T 1jdh_A 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCCh
Confidence 999999888752211 112234566776766654 455666777888777631110 01123578999999999999
Q ss_pred HHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC--H-HHHHHhHHHHHHHhhCC--
Q 009359 295 EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--K-DATIEQLLPIFLSLLKD-- 369 (536)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~-~~~~~~l~~~l~~~l~d-- 369 (536)
+++..++.++..++...........++|.+..++.++++.+|..++.+++.++..-. . .......+|.+...+.+
T Consensus 242 ~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~ 321 (529)
T 1jdh_A 242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321 (529)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence 999999999999987654333335678888899999999999999999999976311 1 11224567888888865
Q ss_pred CCHHHHHHHHHhhHHHHhhhch------hHHHhhHHHHHHHhhcCCC-hHHHHHHHHHHHHHHhhhch--hhHHHHHHHH
Q 009359 370 EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGV--GFFDDKLGAL 440 (536)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~~~~~~~-~~~R~~a~~~l~~l~~~~~~--~~~~~~l~~~ 440 (536)
+++.+|..++.+++.++...+. .......+|.+.+++.+++ +.+|..++.++..++..-.. ......++|.
T Consensus 322 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~ 401 (529)
T 1jdh_A 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401 (529)
T ss_dssp TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHH
Confidence 4479999999999998653222 1122356888999999876 69999999999998753221 1123457888
Q ss_pred HHHHhcCcchHHHHHHHHHHHH----------------------HHHHhC--hhhhhhchhHHHHhhccCCChHHHHHHH
Q 009359 441 CMQWLKDKVYSIRDAAANNVKR----------------------LAEEFG--PDWAMQHIVPQVLEMINNPHYLYRMTIL 496 (536)
Q Consensus 441 l~~~l~d~~~~Vr~~a~~~l~~----------------------l~~~~~--~~~~~~~i~~~l~~~~~d~~~~~r~~~~ 496 (536)
+..++.+.++.+|..|+++++. ++.... ........++.+.+++.+++..+|..+.
T Consensus 402 L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~ 481 (529)
T 1jdh_A 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481 (529)
T ss_dssp HHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHH
Confidence 9999988888888876655543 221100 0122356789999999999999999999
Q ss_pred HHHHHHhhhhC--hHHHHHhHHHHHHhhcCCccchhhhcc
Q 009359 497 QAISLLAPVMG--SEITCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 497 ~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
.++++++..-. ........++.|..+++++++.|++.|
T Consensus 482 ~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a 521 (529)
T 1jdh_A 482 GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521 (529)
T ss_dssp HHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHH
Confidence 99999874311 112244568999999999999999876
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=2.7e-22 Score=202.46 Aligned_cols=370 Identities=11% Similarity=0.082 Sum_probs=250.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcCc-chHHHHHHHHhHHHhhcccCc---h
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP---Q 236 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~---~ 236 (536)
++.+...++++++.+|..|+.+|..++..... ......++|.+.+++.++ ++.+|..|+.+|+.++...+. .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44555566666777777777777776542111 112234667777777776 677888888888777764322 1
Q ss_pred hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC-
Q 009359 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN- 312 (536)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~- 312 (536)
.....++|.+..+++++++.+|..++.+|++++..- ........+++.+..++.+.++.+|..|+.++..++..-+
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 112456777777777778888888888888876321 0011123567888888888888888888888888875431
Q ss_pred --hHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHh
Q 009359 313 --PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 313 --~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (536)
.......++|.+..++.+.++.+|..++.+++.++...+. ......++|.+..++.++++.+|..++.+++.++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 1233456777777788888888888888888888753211 11223667888888888888888888888888764
Q ss_pred hhch---hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 009359 388 VIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (536)
Q Consensus 388 ~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (536)
..+. ..+...++|.+..++.++++.+|..++.+++.++..... ..+...++|.+..++.++++.||..|+++|+
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2211 112346788888888888888888888888888752211 1122346777888888888889999999998
Q ss_pred HHHHHhCh--h----hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChH--------------HHHHhHHHHHHh
Q 009359 462 RLAEEFGP--D----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--------------ITCSQLLPVVIN 521 (536)
Q Consensus 462 ~l~~~~~~--~----~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~--------------~~~~~~~~~l~~ 521 (536)
.++...++ + .....++|.|..++.+++..+|..+++++..++...+.. +.....++.+..
T Consensus 409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~ 488 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488 (530)
T ss_dssp HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence 88876443 2 123568888888888888889999999988887654321 112235778888
Q ss_pred hcCCccchhhhcc
Q 009359 522 ASKDSESVAVTYS 534 (536)
Q Consensus 522 ~l~d~~~~vr~~a 534 (536)
+.+++.+.|++.|
T Consensus 489 L~~~~~~~v~~~a 501 (530)
T 1wa5_B 489 CQQNENDKIYEKA 501 (530)
T ss_dssp GGGCSCHHHHHHH
T ss_pred HHcCCCHHHHHHH
Confidence 8888888887655
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=1e-21 Score=198.35 Aligned_cols=372 Identities=12% Similarity=0.087 Sum_probs=278.7
Q ss_pred hcCcccchhhHHHhhhhhhccCCC-h--H--HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHhh---hhhHHHHH
Q 009359 134 AAGEWFTARVSSCGLFHVAYPSAP-E--A--LKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEA---AHLKSEIM 204 (536)
Q Consensus 134 ~~~~~~~~r~~a~~~l~~~~~~~~-~--~--~~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~ 204 (536)
..++++.+|..|+..+..+..... + . ....+++.+..++.++ ++.+|..|+.+|+.++...+. .......+
T Consensus 96 L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 175 (530)
T 1wa5_B 96 LNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175 (530)
T ss_dssp HSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence 333444555555555555433211 1 1 2234678888999887 899999999999999863221 11223568
Q ss_pred HHHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccc
Q 009359 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTR 278 (536)
Q Consensus 205 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~ 278 (536)
|.+..++.++++.+|..|+.+|+.++...+. ......++|.+..++.+.++.+|..++.+|+.++..-+.. ...
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 255 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 255 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH
Confidence 8899999999999999999999999864322 1123468899999999999999999999999998643111 123
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh--H-HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---
Q 009359 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--- 352 (536)
Q Consensus 279 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--- 352 (536)
..++|.+..++.+.++.+|..|+.++..++...+. . .+...++|.+..++.++++.+|..++.+++.++...+.
T Consensus 256 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 335 (530)
T 1wa5_B 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335 (530)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH
Confidence 46899999999999999999999999999864221 1 22236788899999999999999999999999853221
Q ss_pred HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch---hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc
Q 009359 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (536)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 429 (536)
......++|.+..++.++++.+|..|+.+++.++..... ..+...++|.|..++.++++.+|..++.+++.++...+
T Consensus 336 ~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 415 (530)
T 1wa5_B 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 415 (530)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 122356889999999999999999999999998752211 11224678899999999999999999999999987644
Q ss_pred h--hh----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh--------------hhhhchhHHHHhhccCCCh
Q 009359 430 V--GF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--------------WAMQHIVPQVLEMINNPHY 489 (536)
Q Consensus 430 ~--~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--------------~~~~~i~~~l~~~~~d~~~ 489 (536)
+ +. ....++|.+..++.++++.||..++.+|..+....... ......++.|..+..+++.
T Consensus 416 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~ 495 (530)
T 1wa5_B 416 QRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND 495 (530)
T ss_dssp TCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCH
T ss_pred CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 3 22 22347888999999999999999999999998764321 1113457788888999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 009359 490 LYRMTILQAISLLAPV 505 (536)
Q Consensus 490 ~~r~~~~~~l~~l~~~ 505 (536)
.++..+..++..+...
T Consensus 496 ~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 496 KIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHCCc
Confidence 9999999999987765
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=2.1e-21 Score=200.34 Aligned_cols=499 Identities=12% Similarity=0.042 Sum_probs=342.7
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhh---hhcccccccc-ccC-CchHHHHHHHHHHhchhcccCCcc--
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGLE-- 82 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~-~~d-~~~~vr~~a~~~l~~l~~~~~~~~-- 82 (536)
-|..|+..++++++.+|..|+..|..++........ ....++.+.. +.+ +++++|..++.+|..++.......
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 478888999999999999999999999864432111 1133455544 444 488999999999988765321100
Q ss_pred chhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChh--h-HHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH
Q 009359 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--D-VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA 159 (536)
Q Consensus 83 ~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~--~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 159 (536)
...-.++.|..++.++++.+|..|+.+|.+++...+.. . .....+|.+..+..++++.++..++.++..+....++.
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 12245667788888889999999999999998864321 1 23557888888888877777878877887776532221
Q ss_pred ----HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcc
Q 009359 160 ----LKTELRTIYRQLCQDDM-PMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (536)
Q Consensus 160 ----~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 232 (536)
.....++.+..++.+.+ ..++..++.+|..++..-.. .......++.+..++.+.+..++..++.++..++..
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 22345677788877654 56788888898888742111 112234688899999999999999999999999876
Q ss_pred cCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCC--cHHHHHHHHHhHHHH
Q 009359 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKI 307 (536)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~--~~~vr~~a~~~l~~~ 307 (536)
.+.......++|.+.+++.+.++.+|..++.+|++++..-. ........++.+..++.+. .+++|..|+.+++.+
T Consensus 255 ~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp CTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 65544456789999999999999999999999999875210 0111234688888888753 379999999999999
Q ss_pred HhhcChH------HHHHhhhHHHHHhccCCC-HHHHHHHHHHHHHhhhhhC--HHHHHHhHHHHHHHhhCCCCHHHHHHH
Q 009359 308 CRILNPE------LAIQHILPCVKELSSDSS-QHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNI 378 (536)
Q Consensus 308 ~~~~~~~------~~~~~i~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (536)
+...+.. ......+|.+..++.+++ +.+|..++.+++.++..-. .......++|.+...+.+.++.+|..+
T Consensus 335 ~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a 414 (644)
T 2z6h_A 335 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414 (644)
T ss_dssp TSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-
T ss_pred hcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHh
Confidence 7543321 222456788888887764 8999999999999875321 122245678888888888888888877
Q ss_pred HHhhHH--HHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHhcCcchHHHH
Q 009359 379 ISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRD 454 (536)
Q Consensus 379 ~~~l~~--l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~ 454 (536)
+.+++. +.. ...+..++..++.++..++....... .....+|.+..++.+.++.||.
T Consensus 415 ~~al~n~~~~~-------------------~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~ 475 (644)
T 2z6h_A 415 SMGGTQQQFVE-------------------GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 475 (644)
T ss_dssp ---------CC-------------------SSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred hhccccchhcc-------------------cccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHH
Confidence 665543 111 01234566677777776664322211 1234678899999999999999
Q ss_pred HHHHHHHHHHHHhC--hhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCcc
Q 009359 455 AAANNVKRLAEEFG--PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSE 527 (536)
Q Consensus 455 ~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~ 527 (536)
.++.+++.+...-. ........++.|.+++++++..+|..+..+++.++..-+..+...-.+..+..+..+..
T Consensus 476 ~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 476 VAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 99999998874310 11122456788899999999999999999999998776543222113566666666553
No 22
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.90 E-value=5.5e-22 Score=202.33 Aligned_cols=496 Identities=10% Similarity=0.036 Sum_probs=331.2
Q ss_pred HHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccchH
Q 009359 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPP 90 (536)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 90 (536)
..+.+.+++++...|..+++.+-.+ ...|.+. ..+.+.+.+ +.+++.+.++.....+..+++. .++......+.
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~in~ 111 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMTNC 111 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 3444455555555555555444443 2233221 111222222 5577788888777777666542 22223334455
Q ss_pred HHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHH
Q 009359 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQ 170 (536)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (536)
|..-++++++.+|..|+.+++.+.. +...+.+.+.+.++..++++.+|..|+.++..++...+ +....+++.+..
T Consensus 112 l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~ 186 (618)
T 1w63_A 112 IKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKN 186 (618)
T ss_dssp HHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTT
T ss_pred HHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHH
Confidence 6777789999999999999999873 34556788888889999999999999999999887543 344567888889
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhcC---------------cchHHHHHHHHhHHHhhcccC
Q 009359 171 LCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQD---------------DQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 171 ll~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~ 234 (536)
++.|+++.|+..|+.+|..++...+. ......++|.+.+.+.+ .++..+...++.++.++..-+
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD 266 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence 99999999999999999998754322 11223345555544432 467788888899988876322
Q ss_pred chhhhhhhHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHH
Q 009359 235 PQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 308 (536)
Q Consensus 235 ~~~~~~~l~~~l~~~~------~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~ 308 (536)
. ....+.+.+.+++ ++.+..|...+++++..+.. .........+.+..++.++++++|..|+.+++.++
T Consensus 267 ~--~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 267 D--SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp H--HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 1 2234445554443 23456788888888776421 11111235677888899999999999999999998
Q ss_pred hhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhh
Q 009359 309 RILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (536)
Q Consensus 309 ~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (536)
... ........+.+...+.|++..+|..+++.+..++..-+. +.+++.+...+.+.+.++|..++.+++.++..
T Consensus 342 ~~~--p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 342 QTD--HNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHH--HHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred hhC--HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 752 222344455666777899999999999999999875432 34566677777788899999999999999987
Q ss_pred hchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHH
Q 009359 389 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 389 ~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~ 466 (536)
+.+. ....++.+.+++++....++..++..+..+...... .....++.+...+.+ ....+...+++++|+++..
T Consensus 416 ~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 416 YAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp SCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred hCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence 6432 144566666777666555666666666666554321 233445555555553 2344555799999999876
Q ss_pred hChh---------hhhhchhHHHHhhcc--CCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccchhhhcc
Q 009359 467 FGPD---------WAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 467 ~~~~---------~~~~~i~~~l~~~~~--d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
+... .....+.+.+..++. ..+..+|..++.++.++....+.. .+.+...+..+.+|.+++||+-|
T Consensus 492 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrdRA 568 (618)
T 1w63_A 492 LVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQRA 568 (618)
T ss_dssp HTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred hcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHHHH
Confidence 5320 011334555555543 568899999999999998877643 56667777778889999998754
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.90 E-value=1.1e-21 Score=205.32 Aligned_cols=478 Identities=12% Similarity=0.062 Sum_probs=331.5
Q ss_pred cccccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhh-HH--hhHHHH
Q 009359 53 LSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD-VV--EHFIPL 129 (536)
Q Consensus 53 l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~--~~l~~~ 129 (536)
+..+.++++++|.+++..+..... .......+|.|..++.++++.+|+.|+.+|..++....... +. ..+++.
T Consensus 121 v~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 121 VQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp -----CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 333777888999998888764421 12334556777777788899999999999999987543221 11 124554
Q ss_pred HHHHh-cCcccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhh-HHH
Q 009359 130 VKRLA-AGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHL-KSE 202 (536)
Q Consensus 130 l~~l~-~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~-~~~ 202 (536)
+..+. .+++..+|..++..+..+....... .....++.+..+++++++.+|..|+.+|.+++...+. ..+ ...
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g 276 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG 276 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC
Confidence 44444 4557789999998888875542111 2235788999999999999999999999999976332 112 245
Q ss_pred HHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhCC--Cc
Q 009359 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP--EP 276 (536)
Q Consensus 203 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~-~~vR~~~~~~l~~l~~~~~~--~~ 276 (536)
.+|.+.+++.++++.++..++.++..++....+ .......++.+..++.+.+ ..++..++.++..++..-.. ..
T Consensus 277 ~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 356 (780)
T 2z6g_A 277 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356 (780)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 789999999999999999999999877642211 1122346777777777654 44556777888887742110 01
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH--H-
Q 009359 277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--D- 353 (536)
Q Consensus 277 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~- 353 (536)
.....++.+..++.+.++.++..++.++..++...........++|.+..++.++++.+|..++.+++.++..-.. .
T Consensus 357 ~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~ 436 (780)
T 2z6g_A 357 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 436 (780)
T ss_dssp HHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 1235689999999999999999999999999875533322356788888999999999999999999999764211 1
Q ss_pred HHHHhHHHHHHHhhCCC--CHHHHHHHHHhhHHHHhhhchh------HHHhhHHHHHHHhhcCCC-hHHHHHHHHHHHHH
Q 009359 354 ATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLL 424 (536)
Q Consensus 354 ~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~------~~~~~i~~~l~~~~~~~~-~~~R~~a~~~l~~l 424 (536)
......++.+...+.+. ...+|..|+.+|+.++...+.. ......+|.|.+++.+++ +.+|..++.+++.+
T Consensus 437 i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nL 516 (780)
T 2z6g_A 437 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516 (780)
T ss_dssp HHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 11234678888888752 3489999999999987532221 122456888999988776 69999999999999
Q ss_pred Hhhhchh--hHHHHHHHHHHHHhcCcc----------------------hHHHHHHHHHHHHHHHHhCh--hhhhhchhH
Q 009359 425 ASQLGVG--FFDDKLGALCMQWLKDKV----------------------YSIRDAAANNVKRLAEEFGP--DWAMQHIVP 478 (536)
Q Consensus 425 ~~~~~~~--~~~~~l~~~l~~~l~d~~----------------------~~Vr~~a~~~l~~l~~~~~~--~~~~~~i~~ 478 (536)
+..-... .....++|.+.+++.+.+ ..|+..++.+|+.++..-.. .......+|
T Consensus 517 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~ 596 (780)
T 2z6g_A 517 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596 (780)
T ss_dssp HSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHH
T ss_pred hcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHH
Confidence 8522111 112346777777776544 34666777777776532110 112367899
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhhhhCh--HHHHHhHHHHHHhhcCCccchhhhcc
Q 009359 479 QVLEMINNPHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 479 ~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
.|.+++.+++..++..++.++..++..-.. .+.....++.|..+++++++.||..|
T Consensus 597 ~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A 654 (780)
T 2z6g_A 597 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 654 (780)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999999999998743111 11233468899999999999998765
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=1.9e-20 Score=190.88 Aligned_cols=481 Identities=12% Similarity=0.089 Sum_probs=343.9
Q ss_pred HHHHHHhhhHHHHHHhhChHh----hhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCc---cc-hhccchHHHhh
Q 009359 24 QLRLNSIRRLSTIARALGEER----TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGL---EY-ANVLLPPLETL 94 (536)
Q Consensus 24 ~~R~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~---~~-~~~ll~~l~~l 94 (536)
..|..|.-.+..+-..++.+. ..+.+-.|+.. +...+.+-...++.++..+....... .+ ..-.++.|..+
T Consensus 219 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~L 298 (810)
T 3now_A 219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAM 298 (810)
T ss_dssp THHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHH
Confidence 467777767777666665322 22233334433 33444455556666676665532210 01 33556777888
Q ss_pred hcCcchHHHHHHHHHHHHHHhhcCh-hhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCC---------ChHHHHHH
Q 009359 95 CTVEETCVRDKAVESLCRIGSQMRE-QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA---------PEALKTEL 164 (536)
Q Consensus 95 ~~~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~---------~~~~~~~l 164 (536)
++++++.++..|..+++..+..-.. +.+...-.|.+..+.++++..+|..|...+..+.... .......+
T Consensus 299 l~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~L 378 (810)
T 3now_A 299 ATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKL 378 (810)
T ss_dssp HHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHH
Confidence 8889999999999999998775322 2222223488888888777778888888887775321 11235678
Q ss_pred HHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHhh-hhh--HHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch---
Q 009359 165 RTIYRQLCQDD--MPMVRRSAATNLGKFAATVEA-AHL--KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--- 236 (536)
Q Consensus 165 ~~~l~~ll~d~--~~~vr~~a~~~l~~~~~~~~~-~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--- 236 (536)
.+.+..++.++ ++.+|..|+.+|..+...... ..+ ....+|.+.+++++++..++..+..+|+.++.....+
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~ 458 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEML 458 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhh
Confidence 89999998887 899999999999999753322 222 2468899999999988999999999999998744200
Q ss_pred --------------------------------hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchH
Q 009359 237 --------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVV 282 (536)
Q Consensus 237 --------------------------------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~ 282 (536)
......+|.+..+++++++.+|..++++|++++..-.. .......+
T Consensus 459 ~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gai 538 (810)
T 3now_A 459 PEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGV 538 (810)
T ss_dssp CSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 01224789999999999999999999999999732110 11133579
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHH-----HHhhhHHHHHhccCC-CHHHHHHHHHHHHHhhhhhC---HH
Q 009359 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-----IQHILPCVKELSSDS-SQHVRSALATVIMGMAPILG---KD 353 (536)
Q Consensus 283 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~---~~ 353 (536)
|.++.++.+.++.+|..|+.++..++....++.. ....+|.|..++... +...+..++.+|..++..-. ..
T Consensus 539 p~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~ 618 (810)
T 3now_A 539 KALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQR 618 (810)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999998999999999999999876554421 123667777877644 44556788999999986421 11
Q ss_pred HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch-hHHH--hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc-
Q 009359 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG- 429 (536)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~--~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~- 429 (536)
......+|.+..++.++++.||..|+.+++++...-.. ..+. ...++.|..++...+..+|..|+.++..++....
T Consensus 619 Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~ 698 (810)
T 3now_A 619 IIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK 698 (810)
T ss_dssp HHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH
Confidence 22345689999999999999999999999998752111 1111 3578899999999999999999999999986321
Q ss_pred --hhhHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh----hhhhchhHHHHhhccCC---ChHHHHHHHHHH
Q 009359 430 --VGFFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNP---HYLYRMTILQAI 499 (536)
Q Consensus 430 --~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~---~~~~r~~~~~~l 499 (536)
...+. ...+|.+..++.+.+..+|..|++++..+... +.+ ......++.|.++++++ +..++..+.+++
T Consensus 699 ~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL 777 (810)
T 3now_A 699 CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777 (810)
T ss_dssp HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHH
Confidence 12233 46788999999999999999999999999863 222 23367899999987654 789999999999
Q ss_pred HHHhhh
Q 009359 500 SLLAPV 505 (536)
Q Consensus 500 ~~l~~~ 505 (536)
..+...
T Consensus 778 ~~ll~~ 783 (810)
T 3now_A 778 AAAERY 783 (810)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 998764
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=3.3e-21 Score=198.87 Aligned_cols=458 Identities=13% Similarity=0.069 Sum_probs=320.1
Q ss_pred ccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhh-HH--hhHHHHHHHH-hcCcccchhhHHHhhhhhh
Q 009359 77 YVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD-VV--EHFIPLVKRL-AAGEWFTARVSSCGLFHVA 152 (536)
Q Consensus 77 ~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~--~~l~~~l~~l-~~~~~~~~r~~a~~~l~~~ 152 (536)
+.++..+..-.++.|..++.++++.+|..|+.+|..++....... .. ...++.+..+ ..+++..+|..++..+..+
T Consensus 5 ~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 5 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp -------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 334444555667788888888899999999999999988654322 11 1234444444 4444778888888888876
Q ss_pred ccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcCcchHHHHHHHHhH
Q 009359 153 YPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAVEGC 226 (536)
Q Consensus 153 ~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 226 (536)
....... .....++.+..+++++++.+|..|+.+|.+++...+.. ......+|.+.++++++++.++..++.+|
T Consensus 85 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 85 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp TTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred hcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 5542111 12347788999999999999999999999998764321 12346889999999999999999999999
Q ss_pred HHhhcccCc---hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCCcHHHHHHH
Q 009359 227 GALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAA 300 (536)
Q Consensus 227 ~~l~~~~~~---~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a 300 (536)
..++...++ .......++.+.+++.+. ...++..++.+|..++..-.. .......++.+..++.+.+..++..+
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a 244 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 888753222 112335677777777765 467788888888888631110 01123578999999999999999999
Q ss_pred HHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC--HH-HHHHhHHHHHHHhhCCC--CHHHH
Q 009359 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KD-ATIEQLLPIFLSLLKDE--FPDVR 375 (536)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~-~~~~~l~~~l~~~l~d~--~~~vr 375 (536)
+.++..++...........++|.+..++.+.++.+|..++.++..++..-. .. ......++.+..++.+. .+.+|
T Consensus 245 ~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 245 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 999999987543333335678888899999999999999999999976311 11 12244678888888763 37999
Q ss_pred HHHHHhhHHHHhhhchh------HHHhhHHHHHHHhhcCCC-hHHHHHHHHHHHHHHhhhch--hhHHHHHHHHHHHHhc
Q 009359 376 LNIISKLDQVNQVIGID------LLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLK 446 (536)
Q Consensus 376 ~~a~~~l~~l~~~~~~~------~~~~~i~~~l~~~~~~~~-~~~R~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~ 446 (536)
..++.+++.++...+.. ......+|.+.+++.+.+ +.+|..++.++..++..-.. ......++|.+.+++.
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 99999999997532221 122467899999998875 79999999999998753221 1123456777778777
Q ss_pred Ccch----------------------HHHHHHHHHHHHHHHHhChh--hhhhchhHHHHhhccCCChHHHHHHHHHHHHH
Q 009359 447 DKVY----------------------SIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLL 502 (536)
Q Consensus 447 d~~~----------------------~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l 502 (536)
+.+. .|+..++.+|..++...... ......+|.|.+++.+++..++..++.++.++
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 484 (644)
T ss_dssp HHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 6544 45556666666665322111 12357899999999999999999999999998
Q ss_pred hhhhCh--HHHHHhHHHHHHhhcCCccchhhhcc
Q 009359 503 APVMGS--EITCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 503 ~~~~~~--~~~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
+..-.. .......++.|.++++++++.||+.|
T Consensus 485 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A 518 (644)
T 2z6h_A 485 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 518 (644)
T ss_dssp HTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred HcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHH
Confidence 753111 11233457899999999999998765
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=5.9e-20 Score=187.37 Aligned_cols=474 Identities=10% Similarity=0.097 Sum_probs=346.3
Q ss_pred chHHHHHHHHHHhchhcccCCc----cchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhh---H-HhhHHHHHH
Q 009359 60 DDEVLLAMAEELGVFIPYVGGL----EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD---V-VEHFIPLVK 131 (536)
Q Consensus 60 ~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~---~-~~~l~~~l~ 131 (536)
.++.|..++-++.++.+....+ .+.+.+-.++......++..-.-.|+.++..+..-.++.. + .+..+|.+.
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li 296 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL 296 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence 5689999999999998876642 2334444455555555565666677778877776443311 2 334677777
Q ss_pred HHhcCcccchhhHHHhhhhhhccCCChH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHh--h------hhhHH
Q 009359 132 RLAAGEWFTARVSSCGLFHVAYPSAPEA--LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE--A------AHLKS 201 (536)
Q Consensus 132 ~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~--~------~~~~~ 201 (536)
.+..+++..++..|..+++.+....... ..+.-.+.|..++++++..+|..|+.+|..++...+ + +....
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~ 376 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAAL 376 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHH
Confidence 8888888888999999988876652211 233334999999999889999999999999875322 1 12246
Q ss_pred HHHHHHHHhhcCc--chHHHHHHHHhHHHhhcccCc-hhhh--hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-
Q 009359 202 EIMSIFEELTQDD--QDSVRLLAVEGCGALGKLLEP-QDCV--AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE- 275 (536)
Q Consensus 202 ~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~- 275 (536)
.+++.+.+++.++ ++.+|..|+++|..++..... +.+. ..++|.+..++++.+..+...++.+|++++......
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 7899999999888 789999999999999864332 2222 468899999998888899999999999998732100
Q ss_pred ----------------------------------ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH--HHHHh
Q 009359 276 ----------------------------------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQH 319 (536)
Q Consensus 276 ----------------------------------~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~ 319 (536)
......+|.|.++++.+++.+|..|+.+++.++..-... .+...
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G 536 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG 536 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 001247999999999999999999999999998532111 23355
Q ss_pred hhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHH-----HHhHHHHHHHhhCCC-CHHHHHHHHHhhHHHHhhh---c
Q 009359 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT-----IEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI---G 390 (536)
Q Consensus 320 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~---~ 390 (536)
.+|.|..++.+.+...|..|++++..++....++.. ....+|.+..++..+ ....+..|+.+|.++...- .
T Consensus 537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~ 616 (810)
T 3now_A 537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence 678888888888999999999999998765443321 124688899999855 4455567888888887531 1
Q ss_pred hhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch-hhHH--HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q 009359 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 391 ~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (536)
...+....+|.|..++.+++..+|..++++++.++..-.. ..+. ...++.+..++..++..+|..|+.+|+.++...
T Consensus 617 ~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s 696 (810)
T 3now_A 617 QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS 696 (810)
T ss_dssp HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence 1122346789999999999999999999999998753221 1111 236788999999999999999999999998742
Q ss_pred Ch---hhhh-hchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChH----HHHHhHHHHHHhhcCCc---cchhhhcc
Q 009359 468 GP---DWAM-QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----ITCSQLLPVVINASKDS---ESVAVTYS 534 (536)
Q Consensus 468 ~~---~~~~-~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~---~~~vr~~a 534 (536)
.. .... ...+|.|.+++.+++..+|..+++++.++... +.+ ....-.+|.|..+++++ .+.|++.|
T Consensus 697 ~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A 773 (810)
T 3now_A 697 VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773 (810)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence 21 1233 57899999999999999999999999999863 322 24556799999999766 45566654
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.90 E-value=5e-21 Score=193.30 Aligned_cols=370 Identities=11% Similarity=0.085 Sum_probs=273.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcCcc-hHHHHHHHHhHHHhhcccCc---h
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP---Q 236 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~ 236 (536)
++.+...+.++++.+|..|+.+|..++..... ......++|.+.+++.+++ +.+|..|+.+|+.++...+. .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55666677778888999888888888654321 1223457788888888876 88999999999888864322 1
Q ss_pred hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhcC
Q 009359 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILN 312 (536)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~ 312 (536)
......+|.+..++.++++.+|..++.+|++++..-. ........++.++.++ .+.++.++..++.++..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 1223578888899998899999999999999874211 0111234788888888 67888999999999999987532
Q ss_pred --hHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHh
Q 009359 313 --PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 313 --~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (536)
.......++|.+..++.+.++.++..++.+++.++...+. ......++|.+..++.++++.+|..|+.+++.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 1234467788888888999999999999999998854221 11234678999999999999999999999999875
Q ss_pred hhch---hHHHhhHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 009359 388 VIGI---DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNV 460 (536)
Q Consensus 388 ~~~~---~~~~~~i~~~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l 460 (536)
.... ..+...++|.+..++.++ ++.+|..++.+++.++..... ......++|.+..++.+.+..+|..|+.+|
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL 395 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAI 395 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3211 112356789999999988 899999999999999863211 112235678899999988999999999999
Q ss_pred HHHHHHhChhh----hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChH--------------HHHHhHHHHHHhh
Q 009359 461 KRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--------------ITCSQLLPVVINA 522 (536)
Q Consensus 461 ~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~--------------~~~~~~~~~l~~~ 522 (536)
+.++...++.. ....+++.|..++.+++..++..+++++..++...+.. +.....++.+..+
T Consensus 396 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L 475 (528)
T 4b8j_A 396 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 475 (528)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH
Confidence 99988744332 22578899999999999999999999999998754321 1123346778888
Q ss_pred cCCccchhhhcc
Q 009359 523 SKDSESVAVTYS 534 (536)
Q Consensus 523 l~d~~~~vr~~a 534 (536)
.+++.+.|++.|
T Consensus 476 ~~~~~~~v~~~a 487 (528)
T 4b8j_A 476 QSHDNNEIYEKA 487 (528)
T ss_dssp GGCSSHHHHHHH
T ss_pred HcCCCHHHHHHH
Confidence 888888887765
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=1.1e-20 Score=191.21 Aligned_cols=446 Identities=11% Similarity=0.018 Sum_probs=288.0
Q ss_pred cCCchHHHHHHHHHHhchhcccCCcc-c--hhccchHHHhhh-cCcchHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHH
Q 009359 57 NDDDDEVLLAMAEELGVFIPYVGGLE-Y--ANVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLV 130 (536)
Q Consensus 57 ~d~~~~vr~~a~~~l~~l~~~~~~~~-~--~~~ll~~l~~l~-~~~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l 130 (536)
.++++.+|..++..|.+++..-.... . ....++.+..++ .++++.+|..++.+|..++..-.. .......+|.+
T Consensus 27 ~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L 106 (529)
T 1jdh_A 27 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL 106 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHH
Confidence 34555555555555555543211000 0 011233333333 234566677777777766543211 11122355666
Q ss_pred HHHhcCcccchhhHHHhhhhhhccCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHH
Q 009359 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEI 203 (536)
Q Consensus 131 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l 203 (536)
..+.+++++.+|..++..+..+....+.. .....++.+..++.++++.+|..++.+|..++...+. .......
T Consensus 107 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~ 186 (529)
T 1jdh_A 107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 66666666667777777776665442221 2355788899999999999999999999988742111 1112235
Q ss_pred HHHHHHhhcCcch-HHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc
Q 009359 204 MSIFEELTQDDQD-SVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 280 (536)
Q Consensus 204 ~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 280 (536)
+|.+.+++.+.++ ..+..+..++..++..-.. .......++.+..++.+.+..++..++.++.+++...+.......
T Consensus 187 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 266 (529)
T 1jdh_A 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 266 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHh
Confidence 6777777766544 4566677777777642211 112346788999999999999999999999999876544433457
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC--hH-HHHHhhhHHHHHhccC--CCHHHHHHHHHHHHHhhhhhCH---
Q 009359 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PE-LAIQHILPCVKELSSD--SSQHVRSALATVIMGMAPILGK--- 352 (536)
Q Consensus 281 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~--~~-~~~~~i~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~~--- 352 (536)
++|.+.+++.+.++++|..|+.++..++..-. .. ......++.+..++.+ .++.++..++.+++.++...+.
T Consensus 267 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 346 (529)
T 1jdh_A 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 346 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHH
Confidence 89999999999999999999999999976321 11 1223445666666643 4589999999999999764322
Q ss_pred ---HHHHHhHHHHHHHhhCCCC-HHHHHHHHHhhHHHHhhhch--hHHHhhHHHHHHHhhcCCChHHHHHHHHHHH----
Q 009359 353 ---DATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIP---- 422 (536)
Q Consensus 353 ---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~---- 422 (536)
.......+|.+..++++++ +.+|..++.+++.++..-.. ......++|.+..++.+.++.+|..++++++
T Consensus 347 ~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~ 426 (529)
T 1jdh_A 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------C
T ss_pred HHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhh
Confidence 1222356899999999887 59999999999998742111 1223467888888888877777776554443
Q ss_pred ------------------HHHhhhch--hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--hChhhhhhchhHHH
Q 009359 423 ------------------LLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE--FGPDWAMQHIVPQV 480 (536)
Q Consensus 423 ------------------~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~--~~~~~~~~~i~~~l 480 (536)
.++..... .......++.+..++.|+++.||..++.+++.+... ..........++.|
T Consensus 427 ~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L 506 (529)
T 1jdh_A 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506 (529)
T ss_dssp BTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred hccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH
Confidence 33221110 011234568899999999999999999999988632 11112235678999
Q ss_pred HhhccCCChHHHHHHHHHHHHH
Q 009359 481 LEMINNPHYLYRMTILQAISLL 502 (536)
Q Consensus 481 ~~~~~d~~~~~r~~~~~~l~~l 502 (536)
.++.+++|..+|..+.+++.++
T Consensus 507 ~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 507 TELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999876
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.88 E-value=3.1e-20 Score=187.52 Aligned_cols=371 Identities=13% Similarity=0.076 Sum_probs=273.7
Q ss_pred cCcccchhhHHHhhhhhhccCCC-h--H--HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHhh---hhhHHHHHH
Q 009359 135 AGEWFTARVSSCGLFHVAYPSAP-E--A--LKTELRTIYRQLCQDDM-PMVRRSAATNLGKFAATVEA---AHLKSEIMS 205 (536)
Q Consensus 135 ~~~~~~~r~~a~~~l~~~~~~~~-~--~--~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~ 205 (536)
.++++.+|..|+..+..+..... + . ....++|.|..++.+++ +.+|..|+.+|++++...+. .......+|
T Consensus 84 ~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~ 163 (528)
T 4b8j_A 84 YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163 (528)
T ss_dssp TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHH
Confidence 33344455555555544433221 1 1 22346788888888876 99999999999999863221 112234789
Q ss_pred HHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCC--cccc
Q 009359 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPE--PTRS 279 (536)
Q Consensus 206 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~ 279 (536)
.+..++.++++.+|..|+.+|+.++...+. ......++|.+..++ .+.++.++..++.+|..++...+.. ....
T Consensus 164 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 243 (528)
T 4b8j_A 164 IFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTR 243 (528)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 999999999999999999999999854322 112235788888888 6789999999999999998653221 1234
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---H
Q 009359 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---D 353 (536)
Q Consensus 280 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~ 353 (536)
.++|.+..++.+.+++++..|+.+++.++...... .+...++|.+..++.++++.+|..++.+++.++..... .
T Consensus 244 ~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 244 PALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 68999999999999999999999999998642221 12346788999999999999999999999999863221 1
Q ss_pred HHHHhHHHHHHHhhCCC-CHHHHHHHHHhhHHHHhhhch---hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc
Q 009359 354 ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (536)
Q Consensus 354 ~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 429 (536)
.....++|.+..++.++ ++.+|..|+.+++.++..-.. ..+...++|.|..++.+.++.+|..++.+++.++...+
T Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~ 403 (528)
T 4b8j_A 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 403 (528)
T ss_dssp HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC
Confidence 12245789999999998 999999999999999752111 11234678999999999999999999999999987643
Q ss_pred hhhH----HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh--------------hhhhchhHHHHhhccCCChHH
Q 009359 430 VGFF----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--------------WAMQHIVPQVLEMINNPHYLY 491 (536)
Q Consensus 430 ~~~~----~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--------------~~~~~i~~~l~~~~~d~~~~~ 491 (536)
+... ....++.+..++.++++.++..++.+|+.++...+.. ......+..+..+.++++..+
T Consensus 404 ~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v 483 (528)
T 4b8j_A 404 HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEI 483 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHH
Confidence 3322 2346888999999999999999999999998764321 111345677778888999999
Q ss_pred HHHHHHHHHHHhhh
Q 009359 492 RMTILQAISLLAPV 505 (536)
Q Consensus 492 r~~~~~~l~~l~~~ 505 (536)
+..+...+..+...
T Consensus 484 ~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 484 YEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999987754
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.87 E-value=5.4e-20 Score=187.64 Aligned_cols=470 Identities=12% Similarity=0.060 Sum_probs=324.6
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccc-cccCCchHHHHHHHHHHhchhcccCCccchhccc
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS-ENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 88 (536)
-....+..+.+++...|+-+--.+..++.. .++.. -..+..+. ++.|+++.+|..|..+|+.+. .++..+.+.
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-~~e~~-~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~~l~ 144 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDE-RQDVH-LLMTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCRDLA 144 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCC-CcHHH-HHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHH
Confidence 345667788899998888766555544321 12221 12233333 488999999999999999984 345667778
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCCh--HHHHHHHH
Q 009359 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE--ALKTELRT 166 (536)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~ 166 (536)
+.+..++.|+++.||+.|+.++.++....++ ..+.+++.+..+..|+++.++..|+.++..+...-++ .....+.|
T Consensus 145 ~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~--~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~ 222 (618)
T 1w63_A 145 GEVEKLLKTSNSYLRKKAALCAVHVIRKVPE--LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVP 222 (618)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG--GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 8888999999999999999999999986543 3345677778888898999999999999998765332 12233344
Q ss_pred HHHHhcC---------------CCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh------cCcchHHHHHHHHh
Q 009359 167 IYRQLCQ---------------DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT------QDDQDSVRLLAVEG 225 (536)
Q Consensus 167 ~l~~ll~---------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~ 225 (536)
.+...+. .+++..+...+++|+.++..-+ ...+.+.+.+.+++ ++.+..|...|+.+
T Consensus 223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~ 300 (618)
T 1w63_A 223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD--DSSEAMNDILAQVATNTETSKNVGNAILYETVLT 300 (618)
T ss_dssp HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 4443332 3578888889999888875321 11233444444443 23456788888888
Q ss_pred HHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHH
Q 009359 226 CGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT 305 (536)
Q Consensus 226 l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~ 305 (536)
+..+.. .........+.+..++.++++.+|..+..+++.++...+. ......+.+..++.|++..||..|+..+.
T Consensus 301 i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~ 375 (618)
T 1w63_A 301 IMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSF 375 (618)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHH
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHH
Confidence 887643 1222335667777888888899999999999999875322 12335667888899999999999999999
Q ss_pred HHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHH
Q 009359 306 KICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (536)
Q Consensus 306 ~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (536)
.++..-.- +.+++.+...+.+.+..+|..++.+++.++..+.+. ....++.++..+++....++..++..+..+
T Consensus 376 ~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~i 449 (618)
T 1w63_A 376 ALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQL 449 (618)
T ss_dssp HHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHH
T ss_pred HHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 98764222 334455555556788999999999999999876432 234567777777777666666677777776
Q ss_pred HhhhchhHHHhhHHHHHHHhhcC--CChHHHHHHHHHHHHHHhhhchh---------hHHHHHHHHHHHHhc--CcchHH
Q 009359 386 NQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---------FFDDKLGALCMQWLK--DKVYSI 452 (536)
Q Consensus 386 ~~~~~~~~~~~~i~~~l~~~~~~--~~~~~R~~a~~~l~~l~~~~~~~---------~~~~~l~~~l~~~l~--d~~~~V 452 (536)
..... ...+.+++.+.+.+.+ ........+++++|..+..+... .....+.+.+..++. +.++.|
T Consensus 450 i~~~p--~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 527 (618)
T 1w63_A 450 ITNSV--EMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVT 527 (618)
T ss_dssp HHHSC--STHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHH
T ss_pred HhcCh--hHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHH
Confidence 65432 2334566666666653 23455557899999998765320 112344555555554 568899
Q ss_pred HHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 453 RDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 453 r~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
|..++.++.++....+. ..+.+...|..+.+|.|.++|..|...+.-+..
T Consensus 528 r~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 528 RGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999877543 234555556666778899999999999888764
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.85 E-value=2.8e-18 Score=174.31 Aligned_cols=500 Identities=11% Similarity=0.051 Sum_probs=324.1
Q ss_pred HHHHHHHhcC---hhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhc
Q 009359 11 IAVLIDELKN---DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANV 86 (536)
Q Consensus 11 i~~l~~~l~s---~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 86 (536)
+..+.+.+++ .++..|..+++.+-.+ ...|.+. ..+.+.+.+ +.+++.+.|+...-.+..+++. .++....
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~e~~~L 111 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NSELIRL 111 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC--CcHHHHH
Confidence 4455555553 3566677776665544 3345322 122233333 6678889999888888887652 2333334
Q ss_pred cchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHh--cCcccchhhHHHhhhhhhccCCChHHHH--
Q 009359 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLA--AGEWFTARVSSCGLFHVAYPSAPEALKT-- 162 (536)
Q Consensus 87 ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~--~~~~~~~r~~a~~~l~~~~~~~~~~~~~-- 162 (536)
..+.+..-++|+++.+|..|+.+++.+.. +...+.+.|.+.++. .|.++.+|..|+.++..++... ++..+
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~ 186 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMG 186 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCch
Confidence 44556667789999999999999999854 346667888888888 8889999999999999988743 33333
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcCc-------------chHHHHHHHHhHH
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDD-------------QDSVRLLAVEGCG 227 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~d~-------------~~~vr~~a~~~l~ 227 (536)
.+++.+..+++|+++.|+.+|+.++..++..-+.. ...+.++..+.+++.+. ++..+...++.+.
T Consensus 187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~ 266 (621)
T 2vgl_A 187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQ 266 (621)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGG
T ss_pred hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHH
Confidence 78889999999999999999999999998754331 23444555555554321 5677888888887
Q ss_pred HhhcccCchhhhhhhHHHHHHhc---C---------CCCH--HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc
Q 009359 228 ALGKLLEPQDCVAHILPVIVNFS---Q---------DKSW--RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE 293 (536)
Q Consensus 228 ~l~~~~~~~~~~~~l~~~l~~~~---~---------d~~~--~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~ 293 (536)
.++..-.+ .....+.+.+..++ . +.+. .|...+++++..+. ............+..++.+++
T Consensus 267 ~~~~~~d~-~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~ 342 (621)
T 2vgl_A 267 CYPPPEDP-AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRE 342 (621)
T ss_dssp GSSSCSSH-HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSC
T ss_pred HhCCCCCH-HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCC
Confidence 76642111 12222333222222 1 1122 55666666665542 111223456778888899899
Q ss_pred HHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhcc-CCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCH
Q 009359 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP 372 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 372 (536)
+++|..++.++..++...+.........+.+...+. |++..+|..+++.+..++.. .-.+.++..+...+.+.+.
T Consensus 343 ~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~ 418 (621)
T 2vgl_A 343 TNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADY 418 (621)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCH
T ss_pred cchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCH
Confidence 999999999999998765422233444455555556 99999999999999888754 2245677777788888889
Q ss_pred HHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcch--
Q 009359 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVY-- 450 (536)
Q Consensus 373 ~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-- 450 (536)
+.|..++..++.++..+.... +..+..+.+++.+....+...++..+..+..... ......+..+...+.|+..
T Consensus 419 ~~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~ 494 (621)
T 2vgl_A 419 SIREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHE 494 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCH
T ss_pred HHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchH
Confidence 999999999999887665321 3344445555544333344455555555543322 1233344556666766542
Q ss_pred HHHHHHHHHHHHHHHHhChhh--hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcC--Cc
Q 009359 451 SIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK--DS 526 (536)
Q Consensus 451 ~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~--d~ 526 (536)
.+-..+++.+|+.+..+.... ....++..+.+.+.+.+..+|..++.++.++....+. ..+.+...+..+.+ |.
T Consensus 495 ~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~ 572 (621)
T 2vgl_A 495 NLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNA 572 (621)
T ss_dssp HHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCS
T ss_pred HHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCC
Confidence 455677799998876543210 0124455666666777889999999999998765542 24455556666666 88
Q ss_pred cchhhhcc
Q 009359 527 ESVAVTYS 534 (536)
Q Consensus 527 ~~~vr~~a 534 (536)
+++||+=|
T Consensus 573 d~evrdRA 580 (621)
T 2vgl_A 573 DVELQQRA 580 (621)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 88887644
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.82 E-value=7e-18 Score=168.53 Aligned_cols=370 Identities=10% Similarity=0.068 Sum_probs=268.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccCch---
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQ--- 236 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--- 236 (536)
++.+.+.+++.++.++..|++.+..+...-.. ..+...++|.|.+++++ +++.++..|+.+|..++..-++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34456667888889999998888887543221 12233478999998874 45789999999999998644331
Q ss_pred hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCc-----HHHHHHHHHhHHHHH
Q 009359 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRSDVVPAYVRLLRDNE-----AEVRIAAAGKVTKIC 308 (536)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~ll~d~~-----~~vr~~a~~~l~~~~ 308 (536)
......+|.+.+++++++..+|..++++|++++..- .........++.+..++.+++ ..+...++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 123457899999999999999999999999997321 111112356888888887654 345667778888877
Q ss_pred hhcCh---HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHH---HHHHhHHHHHHHhhCCCCHHHHHHHHHhh
Q 009359 309 RILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (536)
Q Consensus 309 ~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 382 (536)
..-.+ -.....++|.+..++.++++.++..++.++..++..-... .....++|.+..++.+++..++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 64321 1234678899999999999999999999999997642211 11245789999999999999999999999
Q ss_pred HHHHhhhch---hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCcchHHHHHH
Q 009359 383 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAA 456 (536)
Q Consensus 383 ~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a 456 (536)
+.++..-.. ..+....++.+..++.+++..+|..++++++.++..... ......++|.+..++.+.+..||..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 998642211 112245667788888999999999999999998753221 11234578999999999999999999
Q ss_pred HHHHHHHHHHhChhh----hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhh---ChH-HH-----HHhHHHHHHhhc
Q 009359 457 ANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---GSE-IT-----CSQLLPVVINAS 523 (536)
Q Consensus 457 ~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~---~~~-~~-----~~~~~~~l~~~l 523 (536)
+++|+.++.....+. ....+++.|.++++.+|..++..+++++.++.+.. +.. .+ ....+..+..+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999987654432 23678999999999999999999999999987643 221 11 223567888888
Q ss_pred CCccchhhhcc
Q 009359 524 KDSESVAVTYS 534 (536)
Q Consensus 524 ~d~~~~vr~~a 534 (536)
++++..|++.|
T Consensus 459 ~~~n~~i~~~A 469 (510)
T 3ul1_B 459 RHENESVYKAS 469 (510)
T ss_dssp GCSSHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 88888887755
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.82 E-value=2.6e-17 Score=165.43 Aligned_cols=370 Identities=11% Similarity=0.072 Sum_probs=266.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhc-CcchHHHHHHHHhHHHhhcccCch---
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQ--- 236 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--- 236 (536)
++.+.+.++++++..+..|+..+..+...-.. ......++|.+.+++. +.++.++..|+.+|..++..-+..
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455666777888888888877776532111 1223447888888886 445788999999999888654431
Q ss_pred hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCc-----HHHHHHHHHhHHHHH
Q 009359 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRSDVVPAYVRLLRDNE-----AEVRIAAAGKVTKIC 308 (536)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~ll~d~~-----~~vr~~a~~~l~~~~ 308 (536)
......+|.+..++.+++..+|..++++|++++..- .........++.++.++.+++ ..+...++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 223458899999999999999999999999987321 111112356888888887654 345667778888877
Q ss_pred hhcCh---HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHH---HHHHhHHHHHHHhhCCCCHHHHHHHHHhh
Q 009359 309 RILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (536)
Q Consensus 309 ~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 382 (536)
..-.+ -.....++|.+..++.+++..++..++.++..++...... .....++|.+..++.++++.++..++.++
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 64322 1334677899999999999999999999999987642211 12245789999999999999999999999
Q ss_pred HHHHhhhch---hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCcchHHHHHH
Q 009359 383 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAA 456 (536)
Q Consensus 383 ~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a 456 (536)
+.+...-.. ..+....++.+..++.+++..+|..++++++.++..... ......++|.+..++.+.+..||..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 998642111 112345678889999999999999999999998753221 11234578899999999999999999
Q ss_pred HHHHHHHHHHhChhh----hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhh---ChH-HH-----HHhHHHHHHhhc
Q 009359 457 ANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---GSE-IT-----CSQLLPVVINAS 523 (536)
Q Consensus 457 ~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~---~~~-~~-----~~~~~~~l~~~l 523 (536)
+++|+.++.....+. ....+++.|.++++.+|..++..+++++.++.+.. +.. .+ ....+..+..+.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 477 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 477 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence 999999987654432 23578999999999999999999999999987542 221 11 112367788888
Q ss_pred CCccchhhhcc
Q 009359 524 KDSESVAVTYS 534 (536)
Q Consensus 524 ~d~~~~vr~~a 534 (536)
+++...|++.|
T Consensus 478 ~~~n~~i~~~A 488 (529)
T 3tpo_A 478 RHENESVYKAS 488 (529)
T ss_dssp GCSSHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 88888887765
No 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.82 E-value=1.3e-18 Score=160.33 Aligned_cols=252 Identities=19% Similarity=0.155 Sum_probs=183.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHH
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (536)
++.+...++|+++.+|..|+.+|+.+.. +..++.+.++++|+++.+|..|+.+|+.++.. ......+++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHHHH
Confidence 4667788899999999999999998752 45678888899999999999999999888642 112344666
Q ss_pred HHH-HhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHH
Q 009359 245 VIV-NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (536)
Q Consensus 245 ~l~-~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~ 323 (536)
.+. .+.+|+++.||..++.+|+.++...+ ...+.+++.+...++|+++.||..|+.+++.+.. +..+|.
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~ 163 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL 163 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence 665 35678899999999999999875321 1134577888888899999999999988887653 335577
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHH
Q 009359 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (536)
Q Consensus 324 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 403 (536)
+..++.|+++.||..++.+++.+... .+..++.+...++|+++.||..++.+|+.+.. +..+|.+.
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~ 229 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLC 229 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHH
Confidence 77777888888999888888877421 13456778888888888888888888887752 45666777
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Q 009359 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVK 461 (536)
Q Consensus 404 ~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~ 461 (536)
..++|++ +|..++.+++.+.. . ..+|.+.+++.+ +++.++..++..+.
T Consensus 230 ~~l~d~~--vr~~a~~aL~~i~~----~----~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 230 DELKKNT--VYDDIIEAAGELGD----K----TLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHTSSS--CCHHHHHHHHHHCC----G----GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHhcCcc--HHHHHHHHHHhcCc----h----hhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 7777654 77777777776532 1 345666676654 45566666666553
No 35
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.81 E-value=7.5e-18 Score=171.12 Aligned_cols=479 Identities=10% Similarity=0.047 Sum_probs=319.9
Q ss_pred CCCCcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccc-ccccCCchHHHHHHHHHHhchhcccCCcc
Q 009359 4 IDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFL-SENNDDDDEVLLAMAEELGVFIPYVGGLE 82 (536)
Q Consensus 4 ~~~~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 82 (536)
|.+...-....+..+.|+|...|+.+--.+..++.. .++.. -..+..+ .++.|+++.+|..|..+++.+. .++
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~-~~e~~-~L~iN~l~kDl~~~n~~ir~lALr~L~~i~----~~e 142 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS-NSELI-RLINNAIKNDLASRNPTFMGLALHCIANVG----SRE 142 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC-CHHHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC----CHH
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccC-CcHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhhccC----CHH
Confidence 333333456777899999999888777666555421 12221 1223333 3488999999999999999983 356
Q ss_pred chhccchHHHhhh--cCcchHHHHHHHHHHHHHHhhcChhhHH-hhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH
Q 009359 83 YANVLLPPLETLC--TVEETCVRDKAVESLCRIGSQMREQDVV-EHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA 159 (536)
Q Consensus 83 ~~~~ll~~l~~l~--~~~~~~vr~~a~~~l~~~~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 159 (536)
..+.+.+.+...+ .|.++.||+.|+.++.++....+ +... +.+.+.+..+..|+++.++..|..++..+...-+..
T Consensus 143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence 7888899888888 89999999999999999998543 2222 267888888899989999999999988887654332
Q ss_pred ---HHHHHHHHHHHhcCCC-------------ChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh---c--------
Q 009359 160 ---LKTELRTIYRQLCQDD-------------MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT---Q-------- 212 (536)
Q Consensus 160 ---~~~~l~~~l~~ll~d~-------------~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l---~-------- 212 (536)
..+.++..+.+++.+. ++..+...++.++.++..-+ ......+.+.+..++ .
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d-~~~~~~l~~~L~~il~~~~~~~ks~~l 300 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED-PAVRGRLTECLETILNKAQEPPKSKKV 300 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS-HHHHHHHHHHHHHHHHHHHSCCSCSSH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhhccCcccccc
Confidence 3444555555554321 67888888888887653211 122222333333222 1
Q ss_pred -Ccch--HHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc
Q 009359 213 -DDQD--SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL 289 (536)
Q Consensus 213 -d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll 289 (536)
+.+. .|..+++.++-.+. +.........+.+..++.++++.+|..++..+..++...+.........+.+...+
T Consensus 301 ~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L 377 (621)
T 2vgl_A 301 QHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL 377 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh
Confidence 1232 67777777777664 23344566777888888888999999999999998754332112334567777778
Q ss_pred C-CCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC
Q 009359 290 R-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 368 (536)
Q Consensus 290 ~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (536)
+ |++..||..++..+..++.. .. .+.++..+...+.+.+...|..++..++.++..+... ....+..+.+++.
T Consensus 378 ~~d~d~~Ir~~aL~lL~~l~~~---~N-v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~ 451 (621)
T 2vgl_A 378 KTERDVSVRQRAVDLLYAMCDR---SN-AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIR 451 (621)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHH
T ss_pred ccCCCHhHHHHHHHHHHHHcCh---hh-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHH
Confidence 8 99999999999988887642 22 3566666666677788999999999999998776532 1334555566665
Q ss_pred CCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCCh--HHHHHHHHHHHHHHhhhchhh-H-HHHHHHHHHHH
Q 009359 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGF-F-DDKLGALCMQW 444 (536)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~--~~R~~a~~~l~~l~~~~~~~~-~-~~~l~~~l~~~ 444 (536)
+....+...+...+..++... +...+..+..+.+.+.++.. .+-..+++.+|..+..+.... . ...++..+...
T Consensus 452 ~~~~~v~~ev~~~l~~ii~~~--~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~ 529 (621)
T 2vgl_A 452 IAGDYVSEEVWYRVIQIVINR--DDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSK 529 (621)
T ss_dssp HHGGGSCSHHHHHHHHHHGGG--CSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHhCC--hhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHH
Confidence 443344444555555554322 22334556666777777653 344556688888766544311 1 12345566667
Q ss_pred hcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhcc--CCChHHHHHHHHHHHHHh
Q 009359 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLA 503 (536)
Q Consensus 445 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~--d~~~~~r~~~~~~l~~l~ 503 (536)
+.+.++.||..++.++.++....+. ..+.+...+..... |.|.++|..|...+.-+.
T Consensus 530 ~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 530 FHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 7788999999999999999876532 23344444444455 889999999999887764
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.80 E-value=9.9e-17 Score=161.19 Aligned_cols=341 Identities=13% Similarity=0.108 Sum_probs=251.6
Q ss_pred HHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---
Q 009359 163 ELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--- 235 (536)
Q Consensus 163 ~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--- 235 (536)
.++|.|.+++. ++++.++..|+.+|.+++..-... ......+|.+..++.+++..+|..|+.+|+.++..-+.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 46777787775 556889999999999998643221 22234789999999999999999999999999754322
Q ss_pred hhhhhhhHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCCcHHHHHHHHHhHHHH
Q 009359 236 QDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307 (536)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~-----~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~ 307 (536)
.......++.+..++.+.+ ..+...++.++..++..-.... ....++|.+..++.+++++++..|+.++..+
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 1123456778888776543 3456667778877765322211 1245889999999999999999999999998
Q ss_pred HhhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCCHHHHHHHHHh
Q 009359 308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (536)
Q Consensus 308 ~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (536)
+..-... .....++|.+..++.++++.++..++.+++.++..-.. .......++.+..++.++++.+|..|+.+
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 358 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHH
Confidence 8642211 12345678888999999999999999999999753221 12234577889999999999999999999
Q ss_pred hHHHHhhhch---hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH----HHHHHHHHHHHhcCcchHHHH
Q 009359 382 LDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLKDKVYSIRD 454 (536)
Q Consensus 382 l~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~Vr~ 454 (536)
++.++..-.. ......++|.+..++.+.+..+|..|+.++..++.....+.. ....++.+..+|.++++.++.
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9998753211 122356899999999999999999999999998865444321 234688899999999999999
Q ss_pred HHHHHHHHHHHHhC---hh-hh-----hhchhHHHHhhccCCChHHHHHHHHHHHHHh
Q 009359 455 AAANNVKRLAEEFG---PD-WA-----MQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (536)
Q Consensus 455 ~a~~~l~~l~~~~~---~~-~~-----~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~ 503 (536)
.++.+|..+..... .. .. ....+..+..+..+++..++..|...+.+..
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999998876432 11 11 1234666777888999999999999988754
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.80 E-value=8.1e-18 Score=154.91 Aligned_cols=253 Identities=18% Similarity=0.182 Sum_probs=177.9
Q ss_pred HHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 009359 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (536)
Q Consensus 203 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 282 (536)
.++.+...+.|+++.+|..|+.+|+.++. +..++.+..+++|+++.+|..++.+|+.+.. .......++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHH
Confidence 34666778888888899998888888762 3467778888888888999988888876541 111123355
Q ss_pred HHHH-HhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHH
Q 009359 283 PAYV-RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 361 (536)
Q Consensus 283 ~~l~-~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 361 (536)
+.+. .+++|+++.||..++.+++.+....+ ...+.+++.+...++|+++.||..++.+++.+.. +..+|
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~ 162 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP 162 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence 5555 35678888899988888888864321 1124566777777888888888888888887753 34677
Q ss_pred HHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 009359 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441 (536)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l 441 (536)
.+...++|+++.||..++.+++.+... .+..++.+...++|+++.+|..++.+++.+. . +..+|.+
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~----~~~~~~L 228 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D----KRVLSVL 228 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C----GGGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----C----HhhHHHH
Confidence 788888888888888888888776311 1456777778888888888888888887764 1 2345666
Q ss_pred HHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccC-CChHHHHHHHHHHH
Q 009359 442 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAIS 500 (536)
Q Consensus 442 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~~r~~~~~~l~ 500 (536)
...+.|++ ||..++.+++.+. . ...+|.|.+++++ ++..++..++.++.
T Consensus 229 ~~~l~d~~--vr~~a~~aL~~i~----~----~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 229 CDELKKNT--VYDDIIEAAGELG----D----KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHTSSS--CCHHHHHHHHHHC----C----GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHhcCcc--HHHHHHHHHHhcC----c----hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 77777754 8888888887763 2 3677777777654 46666666666654
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.80 E-value=1.6e-16 Score=158.74 Aligned_cols=377 Identities=12% Similarity=0.085 Sum_probs=266.5
Q ss_pred chHHHhhhcCcchHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHHHHhc-CcccchhhHHHhhhhhhccCCChH---
Q 009359 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYPSAPEA--- 159 (536)
Q Consensus 88 l~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~~~~--- 159 (536)
++-+...++++++..+..|...+.++...-.. .-+..-++|.+.++.+ ++++.++..|+.++..+....++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34445556778888899999999887654322 2233446787777765 446778889999999887544332
Q ss_pred -HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcch-----HHHHHHHHhHHHhh
Q 009359 160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQD-----SVRLLAVEGCGALG 230 (536)
Q Consensus 160 -~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~ 230 (536)
.....+|.|..++.++++.||..|+.+|++++...+. .......++.+..++.+.+. .+...+..++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 2234789999999999999999999999999853221 11223356777788876542 35667778888877
Q ss_pred cccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhH
Q 009359 231 KLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304 (536)
Q Consensus 231 ~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l 304 (536)
..-.+ ......++|.+.+++.+++..++..++.+|..++..-.. ......++|.+..++.++++.++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 64332 233467899999999999999999999999988742110 011235789999999999999999999999
Q ss_pred HHHHhhcChH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCCHHHHHHH
Q 009359 305 TKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNI 378 (536)
Q Consensus 305 ~~~~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (536)
+.++..-+.. .+....++.+..++.+++..+|..++.+++.++..-.. ......++|.+..++.+.+..+|..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 9987532211 22345678888889999999999999999999753221 12235688999999999999999999
Q ss_pred HHhhHHHHhhhchhH----HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh---chh-hHHH-----HHHHHHHHHh
Q 009359 379 ISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVG-FFDD-----KLGALCMQWL 445 (536)
Q Consensus 379 ~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~---~~~-~~~~-----~l~~~l~~~l 445 (536)
+.++.+++.....+. .....++.|..++.+++..++..++.++..+.... +.. .+.. ..+..+..+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999876544332 23456888999999999999999999988876532 211 1111 1234455555
Q ss_pred cCcchHHHHHHHHHHHHHH
Q 009359 446 KDKVYSIRDAAANNVKRLA 464 (536)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~ 464 (536)
.+++..|+..|...|.++.
T Consensus 459 ~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 459 RHENESVYKASLNLIEKYF 477 (510)
T ss_dssp GCSSHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHC
Confidence 6666777777666665543
No 39
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.79 E-value=5.7e-16 Score=167.07 Aligned_cols=512 Identities=10% Similarity=0.034 Sum_probs=313.5
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhccc-C--------
Q 009359 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYV-G-------- 79 (536)
Q Consensus 9 ~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~-~-------- 79 (536)
..+..++....|+|...| |.+.|.+.-. .|+ ....++..+. -.+.+..+|..|+..|.+.+..- .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~--~p~-~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l 78 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLET--QDG-FGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHT--STT-HHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhc--CCC-HHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence 346777888889999888 8888876621 222 2223333322 12346789999999998876421 1
Q ss_pred CccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCC--
Q 009359 80 GLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP-- 157 (536)
Q Consensus 80 ~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~-- 157 (536)
+++....+-..+...+.+++..+|.....++..++..--+ ..|+.++|.+..+.++++...+..+..++..+.+...
T Consensus 79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~ 157 (960)
T 1wa5_C 79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPL 157 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTS
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 1111122222222222334589999999999999886433 3577888988888877777778888888888776432
Q ss_pred ---hHH-------HHHHH----HHHH---HhcCCCCh---HHH------HHHHHHHHHHHHHHhhh---hhHHHHHHHHH
Q 009359 158 ---EAL-------KTELR----TIYR---QLCQDDMP---MVR------RSAATNLGKFAATVEAA---HLKSEIMSIFE 208 (536)
Q Consensus 158 ---~~~-------~~~l~----~~l~---~ll~d~~~---~vr------~~a~~~l~~~~~~~~~~---~~~~~l~~~l~ 208 (536)
++. ..... ..+. ..+.++.. .+| ..+++++..+...--++ .......+.+.
T Consensus 158 ~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (960)
T 1wa5_C 158 FRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFH 237 (960)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 111 11222 2222 22555422 233 22333333322100011 12244556655
Q ss_pred HhhcC-----------c----chHHHHHHHHhHHHhhcccCch--hhhhhhHHHHHHhcC-----CCCHHHHHHHHHHHH
Q 009359 209 ELTQD-----------D----QDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQ-----DKSWRVRYMVANQLY 266 (536)
Q Consensus 209 ~~l~d-----------~----~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~-----d~~~~vR~~~~~~l~ 266 (536)
+.+.. . .+.+|..+++++..+.+..++. .+...+++.+.+.+. ..+..++..+++.+.
T Consensus 238 ~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~ 317 (960)
T 1wa5_C 238 KYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLT 317 (960)
T ss_dssp HHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHH
T ss_pred HHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHH
Confidence 55421 1 1357888999998888766542 233445555554443 346788888888888
Q ss_pred HHHHHh------CCCccccchH-HHHHHhcC-----------------------CCcHHHHHHHHHhHHHHHhhcChHHH
Q 009359 267 ELCEAV------GPEPTRSDVV-PAYVRLLR-----------------------DNEAEVRIAAAGKVTKICRILNPELA 316 (536)
Q Consensus 267 ~l~~~~------~~~~~~~~l~-~~l~~ll~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (536)
.+++.- ....+...++ +.+...+. +....+|.+|...+..++...+ +.+
T Consensus 318 ~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v 396 (960)
T 1wa5_C 318 AVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLV 396 (960)
T ss_dssp HHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHH
T ss_pred HHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhH
Confidence 776321 1001122333 33333321 1113578899999999998877 445
Q ss_pred HHhhhHHHHHhcc------CCCHHHHHHHHHHHHHhhhhh-----CHH------HHHHhHHHHHHHhhCCC---CHHHHH
Q 009359 317 IQHILPCVKELSS------DSSQHVRSALATVIMGMAPIL-----GKD------ATIEQLLPIFLSLLKDE---FPDVRL 376 (536)
Q Consensus 317 ~~~i~~~l~~l~~------d~~~~vr~~a~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~vr~ 376 (536)
.+.+++.+...+. +.+|+.|.+++.+++.++... +.. .+.+.+...+...++|+ .+.||.
T Consensus 397 ~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~ 476 (960)
T 1wa5_C 397 TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRV 476 (960)
T ss_dssp HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehH
Confidence 5677777766555 678999999999999997531 111 22223333445556777 899999
Q ss_pred HHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc----------hhh---HHHHHHHHHHH
Q 009359 377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----------VGF---FDDKLGALCMQ 443 (536)
Q Consensus 377 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~----------~~~---~~~~l~~~l~~ 443 (536)
.++.+++.+...+.++ ....+++.+...+.|++..+|..|+.++..++.... .+. +.+.+++.+..
T Consensus 477 ~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ 555 (960)
T 1wa5_C 477 DAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIA 555 (960)
T ss_dssp HHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHH
Confidence 9999999999887654 457889999999999999999999999999887422 222 34556666777
Q ss_pred HhcCcc---h--HHHHHHHHHHHHHHHHhChhhhh--hchhHHHHhh----ccC-CChHHHHHHHHHHHHHhhhhChHH-
Q 009359 444 WLKDKV---Y--SIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEM----INN-PHYLYRMTILQAISLLAPVMGSEI- 510 (536)
Q Consensus 444 ~l~d~~---~--~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~----~~d-~~~~~r~~~~~~l~~l~~~~~~~~- 510 (536)
++.... . .....+.++++.++..++..... ..+++.+... .++ .+...+..++++++.++...+++.
T Consensus 556 ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~ 635 (960)
T 1wa5_C 556 LILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL 635 (960)
T ss_dssp HHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred HHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH
Confidence 776531 1 14467889999998887754322 3344444432 233 366788889999999988765432
Q ss_pred --HHHhHHHHHHhhcCCccch
Q 009359 511 --TCSQLLPVVINASKDSESV 529 (536)
Q Consensus 511 --~~~~~~~~l~~~l~d~~~~ 529 (536)
+.+.++|.+...++.....
T Consensus 636 ~~~~~~~~p~~~~iL~~~~~~ 656 (960)
T 1wa5_C 636 PLLVDSMMPTFLTVFSEDIQE 656 (960)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHhhhHh
Confidence 5777888888766655443
No 40
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.78 E-value=1.3e-15 Score=164.31 Aligned_cols=481 Identities=11% Similarity=0.055 Sum_probs=300.3
Q ss_pred hhHHHHHHHhhhHHHHHHh----------hChHhhhhcccccccc-ccCCchHHHHHHHHHHhchhcccCCccchhccch
Q 009359 21 DDIQLRLNSIRRLSTIARA----------LGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP 89 (536)
Q Consensus 21 ~~~~~R~~a~~~l~~~~~~----------~~~~~~~~~l~~~l~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 89 (536)
.+..+|..|.-.|...... ++++ .+..+-..+.+ +.+.++.+|..++.++..++..-.+ ..|+.+++
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~-~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~ 126 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPAN-NVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLS 126 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHH
Confidence 4678999999988876543 2222 22222222222 2344589999999999998875433 57899999
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHHHhhcCh-----hh---H---HhhHH----HHHHHH---hcCccc---chh------
Q 009359 90 PLETLCTVEETCVRDKAVESLCRIGSQMRE-----QD---V---VEHFI----PLVKRL---AAGEWF---TAR------ 142 (536)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~-----~~---~---~~~l~----~~l~~l---~~~~~~---~~r------ 142 (536)
.+.+.+++++...+..++.++..+++.... +. . ..... .++... ..+... ..|
T Consensus 127 ~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~ 206 (960)
T 1wa5_C 127 DLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVL 206 (960)
T ss_dssp HHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 988888887888889999999999986531 11 1 11112 222221 233211 123
Q ss_pred hHHHhhhhhhc-cCCChH---HHHHHHHHHHHhcCC-----------CC----hHHHHHHHHHHHHHHHHHhhh--hhHH
Q 009359 143 VSSCGLFHVAY-PSAPEA---LKTELRTIYRQLCQD-----------DM----PMVRRSAATNLGKFAATVEAA--HLKS 201 (536)
Q Consensus 143 ~~a~~~l~~~~-~~~~~~---~~~~l~~~l~~ll~d-----------~~----~~vr~~a~~~l~~~~~~~~~~--~~~~ 201 (536)
..++.++..+. ...+.. ....+++.+...+.. .+ +.+|..+++++..++...+.. .+.+
T Consensus 207 ~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~ 286 (960)
T 1wa5_C 207 LVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMIN 286 (960)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344443332 233332 334555655554421 11 468889999999888765542 3445
Q ss_pred HHHHHHHHhhc-----CcchHHHHHHHHhHHHhhcccC------chhhhhhhH-HHHHHhc-------------------
Q 009359 202 EIMSIFEELTQ-----DDQDSVRLLAVEGCGALGKLLE------PQDCVAHIL-PVIVNFS------------------- 250 (536)
Q Consensus 202 ~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~l~-~~l~~~~------------------- 250 (536)
.+++.+.+.+. ..++.++..+++.+..+++.-. ...+...++ +.+...+
T Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~ 366 (960)
T 1wa5_C 287 EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIR 366 (960)
T ss_dssp HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHH
Confidence 56666666654 3456788999999988764211 012223333 2222211
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC------CCcHHHHHHHHHhHHHHHhhc-----ChH-
Q 009359 251 ----QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR------DNEAEVRIAAAGKVTKICRIL-----NPE- 314 (536)
Q Consensus 251 ----~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~------d~~~~vr~~a~~~l~~~~~~~-----~~~- 314 (536)
.+..+..|.++...+..++..++ +...+.+++.+.+.+. +++|..|.+|+.+++.++... +..
T Consensus 367 ~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~ 445 (960)
T 1wa5_C 367 RDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSS 445 (960)
T ss_dssp HHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCC
T ss_pred hccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccc
Confidence 12235689999999999999877 3334556666666665 677899999999999997642 111
Q ss_pred -----HHHHhhhHHHHHhccCC---CHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHH
Q 009359 315 -----LAIQHILPCVKELSSDS---SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (536)
Q Consensus 315 -----~~~~~i~~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (536)
.+.+.+...+...+.|+ ++.+|..++++++.++..+.+ .+...+++.+...+.|++..||..|+.++..++
T Consensus 446 ~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 446 TNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp BCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 12111122222233555 899999999999999988765 457788999999999999999999999999988
Q ss_pred hhhc----------hhH---HHhhHHHHHHHhhcCCC-----hHHHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHh-
Q 009359 387 QVIG----------IDL---LSQSLLPAIVELAEDRH-----WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL- 445 (536)
Q Consensus 387 ~~~~----------~~~---~~~~i~~~l~~~~~~~~-----~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l- 445 (536)
.... .+. +.+.+++.+..+++... ......++.+++.++...+... +...+++.+...+
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~ 604 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7421 222 23556666666666531 1133577888888877766543 2344444444333
Q ss_pred ---cC-cchHHHHHHHHHHHHHHHHhChhh---hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009359 446 ---KD-KVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 446 ---~d-~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
++ .++..+..++++++.++...+++. ..+.++|.+...++.........+.+.++.+...
T Consensus 605 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 33 356788889999999998755432 2367788887777665556777788887777654
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.72 E-value=4.2e-16 Score=135.64 Aligned_cols=185 Identities=23% Similarity=0.240 Sum_probs=139.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhh
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH 241 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (536)
....+.+.++++|+++.+|..|+.+|+.+.. ...++.+.+.+.|+++.+|..++.+++.++. ..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 4556777888888888888888888887543 1345667777788888888888888887753 34
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhh
Q 009359 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL 321 (536)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~ 321 (536)
.++.+...+.|+++.||..++.+|+.+. .+..++.+..+++|+++.||..|+.+++.+.. ...+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 6677777888888888888888887763 23467788888888888888888888888743 3455
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHH
Q 009359 322 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (536)
Q Consensus 322 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (536)
+.+..++.|+++.||..++.+++.+.. +..++.+...++|+++.||..|..+|+.+.
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 667777788888888888888887742 345667777778888888888888877764
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.72 E-value=3.6e-16 Score=137.20 Aligned_cols=185 Identities=22% Similarity=0.234 Sum_probs=136.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhH
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (536)
.++.+..+++|+++.+|..|+..|+.+.. +..+|.+.+.+.|+++.+|..++.+|+.+.. ...+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~ 83 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV 83 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence 35666777788888888888888887643 2345667778888888888888888887753 3466
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHH
Q 009359 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (536)
Q Consensus 244 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~ 323 (536)
+.+.++++|+++.||..++.+|+.+. .+..++.+..+++|+++.||..|+.+++.+.. +..++.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~ 147 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP 147 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence 77777888888888888888887764 23467888888888888888888888888743 344566
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhh
Q 009359 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (536)
Q Consensus 324 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (536)
+..+++|+++.||..++++++.+.. +..++.+...++|+++.||..|..+|+.+...
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 7777788888888888888887753 34567777777888888888888888777654
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.71 E-value=7.3e-16 Score=135.25 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=126.2
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHh
Q 009359 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH 319 (536)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (536)
+..++.+.+.++|+++.+|..++..|+.+. .+..++.+..++.|+++.||..|+.+++.+.. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 445666777777777778877777777653 13566777777777777788877777777642 33
Q ss_pred hhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHH
Q 009359 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (536)
Q Consensus 320 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 399 (536)
.++.+..++.|+++.+|..++.+++.+.. +..++.+...++|+++.||..++.+++.+.. +..+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence 44566666677777777777777777653 2455667777777777777777777777642 3456
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q 009359 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 400 ~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (536)
+.+..+++|+++.+|..++.+++.+.. +...+.+..++.|+++.||..|..+|+.+....
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 666777777777777777777766531 335566667777777777777777777766543
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.71 E-value=1.3e-15 Score=132.54 Aligned_cols=184 Identities=22% Similarity=0.244 Sum_probs=131.2
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc
Q 009359 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 280 (536)
Q Consensus 201 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 280 (536)
+...+.+.+.++|+++.+|..|+..|+.+.. ...++.+.+.++|+++.+|..++.+|+.+. .+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHH
Confidence 4556777778888888888888888877653 245667777777888888888888877663 234
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHH
Q 009359 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360 (536)
Q Consensus 281 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 360 (536)
.++.+..++.|+++.||..|+.+++.+.. +..++.+..++.|+++.||..++.+++.+.. +..+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 66777778888888888888888877643 2344566666777888888888888877753 3456
Q ss_pred HHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 009359 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (536)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l 424 (536)
+.+...++|+++.||..++.+++.+.. +..++.+..+++|+++.+|..+..++..+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 677777788888888888887777632 44566666666777777777777776654
No 45
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.71 E-value=3.2e-15 Score=161.95 Aligned_cols=485 Identities=10% Similarity=0.004 Sum_probs=294.9
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcc----cCCcc--
Q 009359 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE-- 82 (536)
Q Consensus 9 ~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~----~~~~~-- 82 (536)
..+..++..+.++|++.|.+|-+.|.++-. .|+. +..+...+. .+.++.||..++..|.+.++. ++..+
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~--~p~~-w~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEA--SPQA-WQFSWQLMQ--LGKSQEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTT--STHH-HHHHHHHTC--TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CHHH-HHHHHHHHh--cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHH
Confidence 446677777888999899999988877532 2332 333333332 256889999999999877642 22111
Q ss_pred -chhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCc------ccchhhHHHhhhhhhccC
Q 009359 83 -YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE------WFTARVSSCGLFHVAYPS 155 (536)
Q Consensus 83 -~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~------~~~~r~~a~~~l~~~~~~ 155 (536)
..+.++..+....+ .+..||...+.++..++...-+ .++.+++.+..+.+++ +...+..+..++..+.+.
T Consensus 82 ~ir~~ll~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EE 158 (971)
T 2x1g_F 82 ELKQKILESIVRFAG-GPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEE 158 (971)
T ss_dssp HHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHH
Confidence 23445555544432 3578999999999999887654 4555666665555442 334556666666544421
Q ss_pred ----CCh-----------HHHHHHHHHHHHhcCCC-C-------hHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHh
Q 009359 156 ----APE-----------ALKTELRTIYRQLCQDD-M-------PMVRRSAATNLGKFAAT--VEAAHLKSEIMSIFEEL 210 (536)
Q Consensus 156 ----~~~-----------~~~~~l~~~l~~ll~d~-~-------~~vr~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~ 210 (536)
-+. ...+.+++.+..++++. + +.++..+++++..+... .+.. ....+++.+..
T Consensus 159 i~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~- 236 (971)
T 2x1g_F 159 AQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE- 236 (971)
T ss_dssp HHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-
Confidence 010 12345556665555321 1 37999999999998873 4434 55667777766
Q ss_pred h----------------cCcchHHHHHHHHhHHHhhcccCch---hhhhhhHHHHHH-------hcCCCC---HHHHHHH
Q 009359 211 T----------------QDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVN-------FSQDKS---WRVRYMV 261 (536)
Q Consensus 211 l----------------~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~-------~~~d~~---~~vR~~~ 261 (536)
+ .++++.+|..|++++..+...-... .....++|.+.. ...+.+ ......+
T Consensus 237 L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l 316 (971)
T 2x1g_F 237 VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHI 316 (971)
T ss_dssp HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHH
T ss_pred hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHH
Confidence 4 1256789999999999998753211 122334443332 223333 2556667
Q ss_pred HHHHHHHHHHh----C----C-----CccccchHHHHHHhcC-----CCcHHHHHHHHHhHHHHHhhc-C-----h----
Q 009359 262 ANQLYELCEAV----G----P-----EPTRSDVVPAYVRLLR-----DNEAEVRIAAAGKVTKICRIL-N-----P---- 313 (536)
Q Consensus 262 ~~~l~~l~~~~----~----~-----~~~~~~l~~~l~~ll~-----d~~~~vr~~a~~~l~~~~~~~-~-----~---- 313 (536)
++.+..++... . . ......+++.++.+.. ..+++|+..++..+..+++.. . .
T Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~ 396 (971)
T 2x1g_F 317 YMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKC 396 (971)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHH
Confidence 78877776431 1 1 0112245566665542 246788999999888877622 1 0
Q ss_pred ----HHHHHhhhHHHHHhcc---CC-----C-------HHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCC-----
Q 009359 314 ----ELAIQHILPCVKELSS---DS-----S-------QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD----- 369 (536)
Q Consensus 314 ----~~~~~~i~~~l~~l~~---d~-----~-------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----- 369 (536)
..+...+++.+...+. |. + ...|.++...+..++..+| +...+.+++.+...+..
T Consensus 397 ~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~ 475 (971)
T 2x1g_F 397 WEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHP 475 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCC
Confidence 1122333444333221 11 1 1467888888888888777 44556677777666654
Q ss_pred CCHHHHHHHHHhhHHHHhhhchhH--HHhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHh
Q 009359 370 EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWL 445 (536)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l 445 (536)
.+|..|++++.+++.++..+.... ..+.+++.+..+.. |++..+|..++.+++.++..++.. .+.+.+++.++..+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 555 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL 555 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 688999999999999987665422 22445554444442 568899999999999999887642 34566788888888
Q ss_pred cCcchHHHHHHHHHHHHHHHHhChhhh--hhchhHHHHhhccC--CChHHHHHHHHHHHHHhhhhC
Q 009359 446 KDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d--~~~~~r~~~~~~l~~l~~~~~ 507 (536)
| +.|+..|+.++..+++.++.... .+.++..+.+++.. -+...+..++++++.++...+
T Consensus 556 -~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 556 -N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp -H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred -C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 4 78999999999999987654421 24556666666665 367899999999999988776
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=1.6e-15 Score=135.91 Aligned_cols=196 Identities=15% Similarity=0.204 Sum_probs=119.6
Q ss_pred CchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcC-CCcHHHHHHHHHhHHHHHhh
Q 009359 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRI 310 (536)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~ 310 (536)
++.+....+.+.+.+.++|++|..|..++..|..+....+. ......+++.+...+. |.+..||..|+.+++.++..
T Consensus 8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 33444555666677777888888888888888888876332 1112356666666663 77777777777777777654
Q ss_pred cChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhc
Q 009359 311 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (536)
Q Consensus 311 ~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 390 (536)
++... ..+...++|.++..++|.+..||.++..++..++...+
T Consensus 88 l~~~~-------------------------------------~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 88 LAKRF-------------------------------------SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HGGGG-------------------------------------HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred HhhhH-------------------------------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 43320 12234455555555555555555555555555554443
Q ss_pred hhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchh----hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 391 ~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
. +.++|.+...+++++|.+|..++.+++.+....++. .+.+.++|.+..++.|+.+.||.+|..+++.+...
T Consensus 131 ~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 131 L----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp H----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 345555666666666666666666666655444321 24456677777777777777777777777777777
Q ss_pred hChh
Q 009359 467 FGPD 470 (536)
Q Consensus 467 ~~~~ 470 (536)
+|.+
T Consensus 207 vg~~ 210 (242)
T 2qk2_A 207 MGDK 210 (242)
T ss_dssp HCHH
T ss_pred cCHH
Confidence 7765
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=2.1e-15 Score=135.18 Aligned_cols=192 Identities=13% Similarity=0.118 Sum_probs=156.3
Q ss_pred HhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC---HHHHHHhHHHHHHHhh-CCCCHHHHHHHHHhhHHHHhhhchh-
Q 009359 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGID- 392 (536)
Q Consensus 318 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~- 392 (536)
..+.+.+...++|++|..|..++..+..+....+ ... ...+++.+...+ +|.+..||..++.+++.++..+|..
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 4444556666677788888888877777765421 122 256778888888 4889999999999999999888764
Q ss_pred -HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh-
Q 009359 393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD- 470 (536)
Q Consensus 393 -~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~- 470 (536)
.+.+.++|.+.+.+.|++..+|.++..++..++...+.+ .++|.+...+.++++.||..++..++.+....++.
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 345789999999999999999999999999999887764 47788889999999999999999999988766532
Q ss_pred ---hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHHHh
Q 009359 471 ---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ 514 (536)
Q Consensus 471 ---~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 514 (536)
.....++|.+..+++|+++.+|..+..+++.++..+|.+.+.++
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~ 215 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPL 215 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 35578999999999999999999999999999999998755443
No 48
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.69 E-value=2.6e-13 Score=147.14 Aligned_cols=487 Identities=11% Similarity=0.067 Sum_probs=303.8
Q ss_pred CcCcHHHHHHH-hcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcc----cCCc
Q 009359 7 PLYPIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGL 81 (536)
Q Consensus 7 ~~~~i~~l~~~-l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~----~~~~ 81 (536)
.+..+..++.. ..++|++.|.+|-+.|.++-. .|+. +..+...+. .+.++.||..++..|.+.++. ++..
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~--~p~~-~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQV--SPQA-WHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--STTH-HHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--CHHH-HHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 34456677777 446899999999999888744 2222 233333332 356789999999999877652 2211
Q ss_pred c---chhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC-----cccchhhHHHhhhhhhc
Q 009359 82 E---YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAG-----EWFTARVSSCGLFHVAY 153 (536)
Q Consensus 82 ~---~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~a~~~l~~~~ 153 (536)
+ ..+.++..+.... +.++.+|...+.++..++...-++. ++.+++.+..+.++ ++...+..+..++..+.
T Consensus 97 ~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 97 QYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp GHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH
Confidence 1 2334444444432 2358899999999999988654433 56677777666654 13335556666655543
Q ss_pred c----C-C--------C---hHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhcCc
Q 009359 154 P----S-A--------P---EALKTELRTIYRQLCQDDMP--MVRRSAATNLGKFAATVEAA-HLKSEIMSIFEELTQDD 214 (536)
Q Consensus 154 ~----~-~--------~---~~~~~~l~~~l~~ll~d~~~--~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~l~d~ 214 (536)
+ . . . ....+.+++.+..++.+.+. .++..+++++..+.. .+.. .....+++.+.+.+.
T Consensus 175 ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~-- 251 (963)
T 2x19_B 175 EEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ-- 251 (963)
T ss_dssp HHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--
Confidence 2 1 0 0 12456777888887766532 488888888877665 3321 122667888887775
Q ss_pred chHHHHHHHHhHHHhhcccCch---hhhhhhHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHhCCC--------c
Q 009359 215 QDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVN-------FSQDKSWRVRYMVANQLYELCEAVGPE--------P 276 (536)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~-------~~~d~~~~vR~~~~~~l~~l~~~~~~~--------~ 276 (536)
++.+|..|++++..+....... .....+++.+.. ...+.+.......++.+..++...... .
T Consensus 252 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 331 (963)
T 2x19_B 252 DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ 331 (963)
T ss_dssp STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchH
Confidence 5678999999999988754321 122223333222 122233445556677777766432211 1
Q ss_pred cccchHHHHHHhcCC-----CcHHHHHHHHHhHHHHHhhcC-------hH------HHHHhhhHHHHHhccCC-------
Q 009359 277 TRSDVVPAYVRLLRD-----NEAEVRIAAAGKVTKICRILN-------PE------LAIQHILPCVKELSSDS------- 331 (536)
Q Consensus 277 ~~~~l~~~l~~ll~d-----~~~~vr~~a~~~l~~~~~~~~-------~~------~~~~~i~~~l~~l~~d~------- 331 (536)
....+++.+.+...+ .++++...++..+..+++... +. .+...+++.+...+..+
T Consensus 332 ~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~ 411 (963)
T 2x19_B 332 SFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411 (963)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccC
Confidence 112455556655554 355677777777777666221 10 11223333332222111
Q ss_pred -------CH-HHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhh----CCCCHHHHHHHHHhhHHHHhhhchh--HHHhh
Q 009359 332 -------SQ-HVRSALATVIMGMAPILGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGID--LLSQS 397 (536)
Q Consensus 332 -------~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 397 (536)
++ ..|..+.+.+..++...+.+ ..+.+++.+...+ .+.+|..|++++.+++.++..+..+ .....
T Consensus 412 ~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~ 490 (963)
T 2x19_B 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPG 490 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 11 34777888888888777743 4566677777777 6778999999999999998776542 12234
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhh--hh
Q 009359 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQ 474 (536)
Q Consensus 398 i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~ 474 (536)
+++.+..+ .+++..+|..++.+++.++..+... .+.+.+++.+...++| +.|+..|+.++..+++..+.... .+
T Consensus 491 l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~ 567 (963)
T 2x19_B 491 LIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAA 567 (963)
T ss_dssp HHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHH
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44433333 3457889999999999999876532 3455677888888876 78999999999999987654321 24
Q ss_pred chhHHHHhhccC--CChHHHHHHHHHHHHHhhhhC
Q 009359 475 HIVPQVLEMINN--PHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 475 ~i~~~l~~~~~d--~~~~~r~~~~~~l~~l~~~~~ 507 (536)
.++..+.+++.. -+...|..++++++.++...+
T Consensus 568 ~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 568 NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 556666666554 357899999999999998777
No 49
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.69 E-value=5.6e-14 Score=152.24 Aligned_cols=497 Identities=11% Similarity=0.020 Sum_probs=301.1
Q ss_pred hHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccCC------chHHHHHHHHHHhchhccc-CC--c----------
Q 009359 22 DIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD------DDEVLLAMAEELGVFIPYV-GG--L---------- 81 (536)
Q Consensus 22 ~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~------~~~vr~~a~~~l~~l~~~~-~~--~---------- 81 (536)
.+.+|......+..++....| .|.++++.+.. +..+ ++..+..+...|..+.+-+ .. .
T Consensus 98 ~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l 175 (971)
T 2x1g_F 98 PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEI 175 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHH
Confidence 578999999999999988877 67888888876 3332 4566666666666554311 00 0
Q ss_pred -cchhccchHHHhhhcCc-c-------hHHHHHHHHHHHHHHh--hcChhhHHhhHHHHHHHH----h-----------c
Q 009359 82 -EYANVLLPPLETLCTVE-E-------TCVRDKAVESLCRIGS--QMREQDVVEHFIPLVKRL----A-----------A 135 (536)
Q Consensus 82 -~~~~~ll~~l~~l~~~~-~-------~~vr~~a~~~l~~~~~--~~~~~~~~~~l~~~l~~l----~-----------~ 135 (536)
...+.+++++..++.+. + ..++..+++++..+.. .++.. ....+++.+..+ . .
T Consensus 176 ~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~ 254 (971)
T 2x1g_F 176 AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMT 254 (971)
T ss_dssp HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCC
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccC
Confidence 12344555555444321 1 2789999999998877 45544 445566665542 1 1
Q ss_pred CcccchhhHHHhhhhhhccCCCh----HHHHHHHHHHHH-------hcCCCCh---HHHHHHHHHHHHHHHHHhh-----
Q 009359 136 GEWFTARVSSCGLFHVAYPSAPE----ALKTELRTIYRQ-------LCQDDMP---MVRRSAATNLGKFAATVEA----- 196 (536)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~----~~~~~l~~~l~~-------ll~d~~~---~vr~~a~~~l~~~~~~~~~----- 196 (536)
++.+..|..++.++..+...... .....+++.+.. ...+.+. ......++.+..++.....
T Consensus 255 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 255 ADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13457888999999888775331 233344444333 2244443 6677778888877743211
Q ss_pred --------hhhHHHHHHHHHHhhcC-----cchHHHHHHHHhHHHhhccc-C------c-------hhhhhhhHHHHHHh
Q 009359 197 --------AHLKSEIMSIFEELTQD-----DQDSVRLLAVEGCGALGKLL-E------P-------QDCVAHILPVIVNF 249 (536)
Q Consensus 197 --------~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~-~------~-------~~~~~~l~~~l~~~ 249 (536)
......+++.+...... .++.+...+++.+..+++.. . . ......+++.+...
T Consensus 335 ~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 414 (971)
T 2x1g_F 335 ITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK 414 (971)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 12233455666665533 46788999999888876622 1 0 11233344444433
Q ss_pred cC---CC-----C-------HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-----CcHHHHHHHHHhHHHHHh
Q 009359 250 SQ---DK-----S-------WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-----NEAEVRIAAAGKVTKICR 309 (536)
Q Consensus 250 ~~---d~-----~-------~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d-----~~~~vr~~a~~~l~~~~~ 309 (536)
+. |. + ...|.++..++..++..+| +...+.+++.+.+.+.. .+|..|++++.+++.+++
T Consensus 415 ~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae 493 (971)
T 2x1g_F 415 SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAE 493 (971)
T ss_dssp TSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTT
T ss_pred hcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHh
Confidence 31 11 1 1477888888888887666 33344556666555543 678899999999999988
Q ss_pred hcChH--HHHHhhhHHHHHhcc-CCCHHHHHHHHHHHHHhhhhhCH-HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHH
Q 009359 310 ILNPE--LAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (536)
Q Consensus 310 ~~~~~--~~~~~i~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (536)
.+... ...+.+++.+..+.. |+++.||..++++++.++..+.. ..+.+.++|.+...+ | +.|+..|+.++..+
T Consensus 494 ~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l 570 (971)
T 2x1g_F 494 HFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKEL 570 (971)
T ss_dssp C------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHH
T ss_pred hcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHH
Confidence 66542 234556665555543 57899999999999999987763 245677888888888 4 77999999999999
Q ss_pred Hhhhchh--HHHhhHHHHHHHhhcC--CChHHHHHHHHHHHHHHhhhchhhHH---HHHHHHHHH----HhcCc--chHH
Q 009359 386 NQVIGID--LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQ----WLKDK--VYSI 452 (536)
Q Consensus 386 ~~~~~~~--~~~~~i~~~l~~~~~~--~~~~~R~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~----~l~d~--~~~V 452 (536)
++..+.. .+.+.++..+..+++. .+...+..++++++.++...+.+... ..+++.+.. .++.. +..-
T Consensus 571 ~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ 650 (971)
T 2x1g_F 571 CRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAA 650 (971)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Confidence 9776543 2235566666666766 35788999999999998876533222 233333333 33332 2223
Q ss_pred HHH---HHHHHHHHHHHhChh---------------hhhhchhHHHHhhccC--CChHHHHHHHHHHHHHhhhhChHH--
Q 009359 453 RDA---AANNVKRLAEEFGPD---------------WAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSEI-- 510 (536)
Q Consensus 453 r~~---a~~~l~~l~~~~~~~---------------~~~~~i~~~l~~~~~d--~~~~~r~~~~~~l~~l~~~~~~~~-- 510 (536)
+.. ++..++.+...++.. ...+.++|.+..++.+ .+..+...++.+++.++..+|.++
T Consensus 651 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p 730 (971)
T 2x1g_F 651 RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQP 730 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CT
T ss_pred HHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence 333 444455555544431 1125577777766543 367899999999999988887664
Q ss_pred HHHhHHHHHHhhcCC
Q 009359 511 TCSQLLPVVINASKD 525 (536)
Q Consensus 511 ~~~~~~~~l~~~l~d 525 (536)
+.+.+++.+...++.
T Consensus 731 ~l~~~~~~l~~~~~~ 745 (971)
T 2x1g_F 731 MLQDLCLFIVASFQT 745 (971)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHhc
Confidence 456666666654443
No 50
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.67 E-value=2.2e-13 Score=148.18 Aligned_cols=491 Identities=9% Similarity=0.060 Sum_probs=306.2
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcc----cCCc-
Q 009359 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGL- 81 (536)
Q Consensus 7 ~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~----~~~~- 81 (536)
.+..+..++..+.+++...|.+|-+.|.++-. .|+ .+..+...+. .+.++.+|..++..|.+.+.. ++..
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~--~p~-~~~~l~~iL~--~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQD--NPD-AWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--STT-GGGGHHHHHH--HCSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh--Cch-HHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 34567788888888888899999999987744 222 2333333332 255889999999999877642 1111
Q ss_pred --cchhccchHHHhhhcCc-----chHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhcc
Q 009359 82 --EYANVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP 154 (536)
Q Consensus 82 --~~~~~ll~~l~~l~~~~-----~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~ 154 (536)
.....++..+.....++ +..+|...+.++..++...-+ ..|+.+++.+..+.+. +...+..+..++..+.+
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~~-~~~~~~~~l~~L~~l~e 166 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHcc-ChHHHHHHHHHHHHHHH
Confidence 12334444444333232 478999999999999887433 3456667776666652 33345555544444432
Q ss_pred C--------CCh-----------HHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHH-hhc
Q 009359 155 S--------APE-----------ALKTELRTIYRQLCQD-DMPMVRRSAATNLGKFAATVEAAH-LKSEIMSIFEE-LTQ 212 (536)
Q Consensus 155 ~--------~~~-----------~~~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~-~l~ 212 (536)
. .+. ...+.+++.+..++++ .+..++..+++++..+....+... ..+.+++.+.+ ++.
T Consensus 167 ev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH
T ss_pred HHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC
Confidence 1 111 1233455555555543 457899999999988766544321 22345565553 332
Q ss_pred CcchHHHHHHHHhHHHhhccc-Cch--hhhh-------hhHHHHHH--------------hcCCCCHHHHHHHHHHHHHH
Q 009359 213 DDQDSVRLLAVEGCGALGKLL-EPQ--DCVA-------HILPVIVN--------------FSQDKSWRVRYMVANQLYEL 268 (536)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~-~~~--~~~~-------~l~~~l~~--------------~~~d~~~~vR~~~~~~l~~l 268 (536)
++.+|..|++++..+...- ++. .+.. .++..+.. ..++.++.+....++.+..+
T Consensus 247 --~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 247 --SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp --SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred --CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 6789999999999887652 221 0111 11221111 11344566666777777666
Q ss_pred HHHh----CCC----ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc-----ChH---HHHHhhhHHHHHhcc---
Q 009359 269 CEAV----GPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-----NPE---LAIQHILPCVKELSS--- 329 (536)
Q Consensus 269 ~~~~----~~~----~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~-----~~~---~~~~~i~~~l~~l~~--- 329 (536)
+... ... .....+++.++.....++.+|+..++..+..+++.+ ... .+...+++.+...+.
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e 404 (1049)
T 3m1i_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE 404 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5432 111 012235677777667778899999999998888732 111 223444444433221
Q ss_pred CC-------------------CHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC--CCCHHHHHHHHHhhHHHHhh
Q 009359 330 DS-------------------SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQV 388 (536)
Q Consensus 330 d~-------------------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~ 388 (536)
|. .|..|.++...+..++.. +.+...+.+.+.+...+. ..+|..|++++.+++.+...
T Consensus 405 d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~ 483 (1049)
T 3m1i_C 405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1049)
T ss_dssp TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 10 135577777888888744 445556677777777775 36789999999999999776
Q ss_pred hchh---HHHhhHHHHHHHhhc-----CCChHHHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 009359 389 IGID---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLKDKVYSIRDAAANN 459 (536)
Q Consensus 389 ~~~~---~~~~~i~~~l~~~~~-----~~~~~~R~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~ 459 (536)
++.. .+...+++.+..+.. ++...+|..++.+++.++..+.. ..+...+++.++..+.|+++.||..|+.+
T Consensus 484 ~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~a 563 (1049)
T 3m1i_C 484 MSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6543 223556666655433 23456666788999988776543 23456678888889999999999999999
Q ss_pred HHHHHHHhChhhh----------hhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhC
Q 009359 460 VKRLAEEFGPDWA----------MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 460 l~~l~~~~~~~~~----------~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~ 507 (536)
+..+++..+.... .+.++..+..++.+.+...+....++++.++...+
T Consensus 564 l~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 9999998776532 24455555566666666677889999999988887
No 51
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.66 E-value=2.9e-12 Score=138.95 Aligned_cols=482 Identities=13% Similarity=0.073 Sum_probs=302.9
Q ss_pred hhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-ccC-----CchHHHHHHHHHHhchhcccC-C-------------
Q 009359 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-----DDDEVLLAMAEELGVFIPYVG-G------------- 80 (536)
Q Consensus 21 ~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d-----~~~~vr~~a~~~l~~l~~~~~-~------------- 80 (536)
..+.+|......+..++....|+. |+++++.+.. +.+ +++..+..+...|..+.+.+. .
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~ 193 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTS 193 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CC
T ss_pred CCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHH
Confidence 357899999999999998877765 7888888877 332 255556666666665543211 0
Q ss_pred -ccchhccchHHHhhhcCcc--hHHHHHHHHHHHHHHhhcChhh-HHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCC
Q 009359 81 -LEYANVLLPPLETLCTVEE--TCVRDKAVESLCRIGSQMREQD-VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA 156 (536)
Q Consensus 81 -~~~~~~ll~~l~~l~~~~~--~~vr~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~ 156 (536)
....+.+++++..++.+.+ ..++..+++++...+. .+... ....+++.+..... .+..|..++.++..+...-
T Consensus 194 l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 194 LAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp SGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccc
Confidence 1233455566666554432 2488888888877665 32211 12445666655553 4578899999998887753
Q ss_pred Ch----HHHHHHHHHHHH-------hcCCCChHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHhhcC----
Q 009359 157 PE----ALKTELRTIYRQ-------LCQDDMPMVRRSAATNLGKFAATVEA--------AHLKSEIMSIFEELTQD---- 213 (536)
Q Consensus 157 ~~----~~~~~l~~~l~~-------ll~d~~~~vr~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~~l~d---- 213 (536)
.. .....+++.+.. ...+.+.......++.+..++..... ......+++.+.....+
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 350 (963)
T 2x19_B 271 DAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY 350 (963)
T ss_dssp TGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCT
T ss_pred ccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCC
Confidence 32 233334443332 22334455666667777777654321 12233556666666554
Q ss_pred -cchHHHHHHHHhHHHhhcccC-------c------hhhhhhhHHHHHHhcCCC--------------CH-HHHHHHHHH
Q 009359 214 -DQDSVRLLAVEGCGALGKLLE-------P------QDCVAHILPVIVNFSQDK--------------SW-RVRYMVANQ 264 (536)
Q Consensus 214 -~~~~vr~~a~~~l~~l~~~~~-------~------~~~~~~l~~~l~~~~~d~--------------~~-~vR~~~~~~ 264 (536)
.++.+...+++.+..+++... + ..+...+++.+...+..+ .+ ..|..+..+
T Consensus 351 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~ 430 (963)
T 2x19_B 351 PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDT 430 (963)
T ss_dssp TTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHH
Confidence 356677777777777766221 0 112223334433322211 11 347788888
Q ss_pred HHHHHHHhCCCccccchHHHHHHhc----CCCcHHHHHHHHHhHHHHHhhcChH--HHHHhhhHHHHHhccCCCHHHHHH
Q 009359 265 LYELCEAVGPEPTRSDVVPAYVRLL----RDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSA 338 (536)
Q Consensus 265 l~~l~~~~~~~~~~~~l~~~l~~ll----~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~ 338 (536)
+..++...|.. ..+.+++.+.+.+ .+.+|..|.+++.+++.+++.+... .....+++.+..+.. +++.+|..
T Consensus 431 L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~~~~vr~~ 508 (963)
T 2x19_B 431 LMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-SNVQLADT 508 (963)
T ss_dssp HHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-CSHHHHHH
T ss_pred HHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-CcHHHHHH
Confidence 88888777632 2345566666666 6778999999999999999876532 344566665555443 58899999
Q ss_pred HHHHHHHhhhhhCH-HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchh--HHHhhHHHHHHHhhcC--CChHH
Q 009359 339 LATVIMGMAPILGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED--RHWRV 413 (536)
Q Consensus 339 a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~~--~~~~~ 413 (536)
++.+++.++..+.. ..+.+.+++.+...+++ +.|+..|+.++..++...+.. .+.+.++..+..++.. .+...
T Consensus 509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~ 586 (963)
T 2x19_B 509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQ 586 (963)
T ss_dssp HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHH
Confidence 99999999886542 24677889999999976 789999999999999766542 1235666666666664 35688
Q ss_pred HHHHHHHHHHHHhhhchhh---HHHHHHHHHHHHhc-----CcchHHHH---HHHHHHHHHHHHhChh------------
Q 009359 414 RLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLK-----DKVYSIRD---AAANNVKRLAEEFGPD------------ 470 (536)
Q Consensus 414 R~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~-----d~~~~Vr~---~a~~~l~~l~~~~~~~------------ 470 (536)
|..++++++.++...+.+. +.+.+++.+...+. ..++..+. .++++++.+.+.++..
T Consensus 587 ~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~ 666 (963)
T 2x19_B 587 CMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELR 666 (963)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Confidence 9999999999998776322 23444544444332 12344433 5677888888877631
Q ss_pred ------------hhhhchhHHHHhhcc--CCChHHHHHHHHHHHHHhhhhChHH
Q 009359 471 ------------WAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSEI 510 (536)
Q Consensus 471 ------------~~~~~i~~~l~~~~~--d~~~~~r~~~~~~l~~l~~~~~~~~ 510 (536)
...+.++|.+..++. ..+..+.+.++.+++.+...+|..+
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~ 720 (963)
T 2x19_B 667 KLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF 720 (963)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc
Confidence 022455666555543 2356889999999999988887553
No 52
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.64 E-value=2.1e-12 Score=140.49 Aligned_cols=464 Identities=8% Similarity=-0.007 Sum_probs=296.1
Q ss_pred ccccccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhh----cCh---hhHHh
Q 009359 52 FLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRE---QDVVE 124 (536)
Q Consensus 52 ~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~----~~~---~~~~~ 124 (536)
.+..+.+++...|+.|-..|..+.+ .+..+..+..++. ++.+..+|..|+..|.+.+.. +++ ..+..
T Consensus 21 ~l~~~~~p~~~~r~~Ae~~L~~~~~---~p~~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 21 VVSTFYQGSGVQQKQAQEILTKFQD---NPDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHH---STTGGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHh---CchHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 3333345556688888888887754 2345555544443 356889999999999997753 333 23455
Q ss_pred hHHHHHHHHhcCc-----ccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---
Q 009359 125 HFIPLVKRLAAGE-----WFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--- 196 (536)
Q Consensus 125 ~l~~~l~~l~~~~-----~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--- 196 (536)
.++..+.....++ ...+|...+.+++.+...--++.++.+++.+..+++ .++..+..++..|..+.+....
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~ 173 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSA 173 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666665544333 356788888888887665333456677888888776 5566788888888888755431
Q ss_pred ------------h---hhHHHHHHHHHHhhcCc-chHHHHHHHHhHHHhhcccCchh-hhhhhHHHHHH-hcCCCCHHHH
Q 009359 197 ------------A---HLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQD-CVAHILPVIVN-FSQDKSWRVR 258 (536)
Q Consensus 197 ------------~---~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~-~~~d~~~~vR 258 (536)
+ ...+.+++.+.+.+.+. +..++..+++++..+....+... ..+.+++.+.+ ++. ++.+|
T Consensus 174 ~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~ 251 (1049)
T 3m1i_C 174 EQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTR 251 (1049)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHH
Confidence 0 11344555566666543 46789999999988776555322 23446666553 332 68899
Q ss_pred HHHHHHHHHHHHHh-CCCc--cccc-------hHHHHHH-h-------------cCCCcHHHHHHHHHhHHHHHhhcC--
Q 009359 259 YMVANQLYELCEAV-GPEP--TRSD-------VVPAYVR-L-------------LRDNEAEVRIAAAGKVTKICRILN-- 312 (536)
Q Consensus 259 ~~~~~~l~~l~~~~-~~~~--~~~~-------l~~~l~~-l-------------l~d~~~~vr~~a~~~l~~~~~~~~-- 312 (536)
..++.+|..+...- +... +... ++..+.. + -.|.+.++....+..+..+++...
T Consensus 252 ~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 331 (1049)
T 3m1i_C 252 AITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRAL 331 (1049)
T ss_dssp HHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988651 1110 1111 1221111 1 135566666666666665554321
Q ss_pred ------hHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhh-----C---HHHHHHhHHHHHHHhhCC---------
Q 009359 313 ------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-----G---KDATIEQLLPIFLSLLKD--------- 369 (536)
Q Consensus 313 ------~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-----~---~~~~~~~l~~~l~~~l~d--------- 369 (536)
.......+++.+......++..++..+++.+..++... . ...+...+++.++..+.-
T Consensus 332 ~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~d 411 (1049)
T 3m1i_C 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVEN 411 (1049)
T ss_dssp HHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEEC
T ss_pred HcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeC
Confidence 01223455666666666778899999998888876621 1 123445666776665421
Q ss_pred C----------C---HHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhc--CCChHHHHHHHHHHHHHHhhhchh---
Q 009359 370 E----------F---PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVG--- 431 (536)
Q Consensus 370 ~----------~---~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~~--- 431 (536)
+ + +..|..+..++..++...+ +...+.+.+.+...++ ..+|+.|.+++.+++.++..++..
T Consensus 412 d~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~ 490 (1049)
T 3m1i_C 412 DEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK 490 (1049)
T ss_dssp TTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred CCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhH
Confidence 0 1 1457777888888875444 4444677777777765 468999999999999998766543
Q ss_pred hHHHHHHHHHHHHhc-----CcchHHHHHHHHHHHHHHHHhChh-hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009359 432 FFDDKLGALCMQWLK-----DKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 432 ~~~~~l~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
.+...+++.+..+.. |+.+.||..+++++|++...+... .....+++.+.+.+.|++..|+..|+.++.+++..
T Consensus 491 ~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 491 RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 234556666666432 456677778999999888765432 23356777777788899999999999999999998
Q ss_pred hChHHH----------HHhHHHHHHhhcCC
Q 009359 506 MGSEIT----------CSQLLPVVINASKD 525 (536)
Q Consensus 506 ~~~~~~----------~~~~~~~l~~~l~d 525 (536)
.+.... .+.++..+..++.+
T Consensus 571 ~~~~l~~~~~~~~~p~~~~il~~l~~~~~~ 600 (1049)
T 3m1i_C 571 CKYHFVIQQPRESEPFIQTIIRDIQKTTAD 600 (1049)
T ss_dssp HTHHHHSCCTTCSSCHHHHHHHTHHHHHTT
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHh
Confidence 876532 44555555555554
No 53
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5.4e-14 Score=125.37 Aligned_cols=188 Identities=14% Similarity=0.210 Sum_probs=153.8
Q ss_pred HHHHhhcCcchHHHHHHHHhHHH-hhcccCc----hhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhC-CCcc-
Q 009359 206 IFEELTQDDQDSVRLLAVEGCGA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG-PEPT- 277 (536)
Q Consensus 206 ~l~~~l~d~~~~vr~~a~~~l~~-l~~~~~~----~~~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~-~~~~- 277 (536)
-+.+.+.+.+|.-|..|+..+.. +.+..++ ......++..+.+.+ +|.+..||..++++++.++..++ ..+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556788899999999999988 8754332 112346788888888 79999999999999999999998 5543
Q ss_pred --ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHH---HHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH
Q 009359 278 --RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352 (536)
Q Consensus 278 --~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 352 (536)
...++|.++..++|..+.||.++..++..++...++.. ..+.+++.+...+++++|.+|..++.+++.++...+.
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 33689999999999999999999999999999874321 1346777777778889999999999999999887663
Q ss_pred --H---HHH-HhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH
Q 009359 353 --D---ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (536)
Q Consensus 353 --~---~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (536)
. .+. +.++|.+..++.|.+++||.+|..+++.++..+|.+.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT 226 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 2 356 7899999999999999999999999999999999754
No 54
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.59 E-value=2e-13 Score=123.41 Aligned_cols=228 Identities=13% Similarity=0.089 Sum_probs=162.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh---HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC---HHHH
Q 009359 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDAT 355 (536)
Q Consensus 282 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~ 355 (536)
+|.+.+++.++++++|..|+.++..++...+. ......+++.+..++.++++.+|..++.+++.++.... ....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 56677777777777777777777777654321 11223566777777777788888888888888765311 1122
Q ss_pred HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch---hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch--
Q 009359 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-- 430 (536)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-- 430 (536)
....+|.+..+++++++.+|..++.+++.++..... .......+|.+.+++.++++.+|..++.++..++.....
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 235678888888888888888888888888742111 112345788888888888899999999999888753221
Q ss_pred -hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh---hhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhh
Q 009359 431 -GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 506 (536)
Q Consensus 431 -~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~ 506 (536)
.......+|.+..++.++++.+|..|+.+++.++..... ......+++.|.+++++++..+|..+++++++++...
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 122345788899999999999999999999998853111 1223568899999999999999999999999998765
Q ss_pred ChH
Q 009359 507 GSE 509 (536)
Q Consensus 507 ~~~ 509 (536)
+..
T Consensus 244 ~~~ 246 (252)
T 4hxt_A 244 WLE 246 (252)
T ss_dssp BCC
T ss_pred Ccc
Confidence 543
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=8.9e-14 Score=123.95 Aligned_cols=195 Identities=13% Similarity=0.132 Sum_probs=147.5
Q ss_pred HHHHhcCCCcHHHHHHHHHhHHH-HHhhc---C--hHHHHHhhhHHHHHhc-cCCCHHHHHHHHHHHHHhhhhhC-HH--
Q 009359 284 AYVRLLRDNEAEVRIAAAGKVTK-ICRIL---N--PELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG-KD-- 353 (536)
Q Consensus 284 ~l~~ll~d~~~~vr~~a~~~l~~-~~~~~---~--~~~~~~~i~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~-~~-- 353 (536)
-|.+.+.+.+|.-|.+|+.++.. +++.. . ...+ ..++..+...+ +|.+..||..++++++.++..++ ..
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 44455556666666666666666 54321 1 1111 34456666666 78888889999999998888776 32
Q ss_pred -HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH---HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc
Q 009359 354 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (536)
Q Consensus 354 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 429 (536)
.+...++|.++..++|....||.++..++..++...++.. ..+.+++.+...+++++|.+|..++.++..++...+
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999999999999999998774321 135788889999999999999999999999998776
Q ss_pred h--hh---HH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhh
Q 009359 430 V--GF---FD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483 (536)
Q Consensus 430 ~--~~---~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 483 (536)
. .. +. +.++|.+.+++.|+++.||.+|.++++.++..+|.. .+.|.+..+
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~----~~~p~l~~L 234 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN----TFVKTLEHL 234 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG----GGHHHHHHS
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHH
Confidence 3 22 34 678999999999999999999999999999999874 344555443
No 56
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.57 E-value=2.4e-13 Score=122.82 Aligned_cols=224 Identities=14% Similarity=0.119 Sum_probs=165.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhh
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDC 238 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 238 (536)
++.+..+++++++.+|..|+.+|..++...+. .......+|.+.++++++++.+|..++.++..++..-+. ...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 56788888888999999999999999864331 122235788999999999999999999999999864222 122
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh--
Q 009359 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-- 313 (536)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-- 313 (536)
....+|.+..+++++++.+|..++.+|++++.... ........++.+.+++.++++.+|..++.+++.++..-+.
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 34578999999999999999999999999874211 0111235789999999999999999999999998763221
Q ss_pred -HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhh
Q 009359 314 -ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (536)
Q Consensus 314 -~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (536)
......+++.+..++.++++.+|..++.+++.++..-.. .......++.+..+++++++.+|..|+.+++.+...
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 122345678888888888888999998888888752111 112244667777777777777777777777777654
No 57
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.56 E-value=4.5e-11 Score=127.43 Aligned_cols=492 Identities=10% Similarity=0.052 Sum_probs=304.5
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcc----cCCc---
Q 009359 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGL--- 81 (536)
Q Consensus 9 ~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~----~~~~--- 81 (536)
..+..++..+.++++..|.+|.+.|.++-.. |+. +......+. .+.++.+|..++..|.+.++. ++..
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~a-w~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~ 90 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDA-WQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRI 90 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TTG-GGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcC--ccH-HHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 3577788888888888999999888877542 322 333334332 345789999999999876652 2211
Q ss_pred cchhccchHHHhhhcCc-----chHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhcc--
Q 009359 82 EYANVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP-- 154 (536)
Q Consensus 82 ~~~~~ll~~l~~l~~~~-----~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~-- 154 (536)
...+.++..+.....++ +..++.+...++..++...-++ .++.+++.+..+.+.. .........++..+.+
T Consensus 91 ~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV 168 (1023)
T 4hat_C 91 GIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEV 168 (1023)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Confidence 13455556655554443 4678888889999988865443 3555666666655432 2233333444433221
Q ss_pred ------CCChH-----------HHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHH-HhhcCc
Q 009359 155 ------SAPEA-----------LKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAH-LKSEIMSIFE-ELTQDD 214 (536)
Q Consensus 155 ------~~~~~-----------~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~l~~~l~-~~l~d~ 214 (536)
..+.. ..+.+++.+...++ ..++.+...++++++.+....+... ..+.+++.+. .++.
T Consensus 169 ~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~-- 246 (1023)
T 4hat_C 169 FDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT-- 246 (1023)
T ss_dssp HTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--
T ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--
Confidence 11211 23445556656554 3467788889999999887655432 2345777777 7775
Q ss_pred chHHHHHHHHhHHHhhcc-c-Cch-hhhh-------hhHHHH-HH-------------hcCCCCHHHHHHHHHHHHHHHH
Q 009359 215 QDSVRLLAVEGCGALGKL-L-EPQ-DCVA-------HILPVI-VN-------------FSQDKSWRVRYMVANQLYELCE 270 (536)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~-~-~~~-~~~~-------~l~~~l-~~-------------~~~d~~~~vR~~~~~~l~~l~~ 270 (536)
++..|..|++++..+... . ++. .+.+ .+++.+ .. ..++.+.......+..+..+++
T Consensus 247 ~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e 326 (1023)
T 4hat_C 247 SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLA 326 (1023)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 456999999999998862 3 221 1111 122222 11 0122345566667777777766
Q ss_pred HhCCCccc----cch----HHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh-----H---HHHHhhhHHHHHhcc-----
Q 009359 271 AVGPEPTR----SDV----VPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-----E---LAIQHILPCVKELSS----- 329 (536)
Q Consensus 271 ~~~~~~~~----~~l----~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-----~---~~~~~i~~~l~~l~~----- 329 (536)
....-... ..+ +..++.....++.++-..++..+..+.+.+-. . .+...+.+.+..-+.
T Consensus 327 ~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~ 406 (1023)
T 4hat_C 327 RNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEV 406 (1023)
T ss_dssp HHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTC
T ss_pred HHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 54321110 112 23555555677888888888888888764421 1 122333344332211
Q ss_pred -----C-CCH----------HHHH-HHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCC--CCHHHHHHHHHhhHHHHhhhc
Q 009359 330 -----D-SSQ----------HVRS-ALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIG 390 (536)
Q Consensus 330 -----d-~~~----------~vr~-~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~ 390 (536)
| .+| ...- ..-+++..++...+ ....+.+++.+...+.+ .+|..|++++-++|.+.+...
T Consensus 407 ~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~ 485 (1023)
T 4hat_C 407 LVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485 (1023)
T ss_dssp CEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSC
T ss_pred ccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 1 111 1111 11145554544333 35566777777777764 679999999999999988776
Q ss_pred hh---HHHhhHHHHHHHhhc-----CCChHHHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 009359 391 ID---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (536)
Q Consensus 391 ~~---~~~~~i~~~l~~~~~-----~~~~~~R~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (536)
.+ .....++|.+..+.+ |+...+|..++..++..+..+.. ..+.+.++..+++.+.|+++.|..+|+.++.
T Consensus 486 ~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~ 565 (1023)
T 4hat_C 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFI 565 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 54 344677777777776 35567888999999998886642 2245567777888889999999999999999
Q ss_pred HHHHHhChhhh----------hhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHH
Q 009359 462 RLAEEFGPDWA----------MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 510 (536)
Q Consensus 462 ~l~~~~~~~~~----------~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~ 510 (536)
.+++.++.... .+.++..+.+...+-+...+..+.++++.+....+.+.
T Consensus 566 ~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 99998876542 23444445555556677888999999999999988554
No 58
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.56 E-value=1e-13 Score=125.34 Aligned_cols=222 Identities=13% Similarity=0.093 Sum_probs=164.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhh
Q 009359 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDC 238 (536)
Q Consensus 165 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 238 (536)
++.+..+++++++.+|..|+.+|..+...... .......+|.+.++++++++.+|..|+.+|+.++...+. ...
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56677778889999999999999876654221 122345789999999999999999999999999864332 122
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH-
Q 009359 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE- 314 (536)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~- 314 (536)
....+|.+..+++++++.+|..++.+|++++...... ......+|.+.+++.++++.+|..|+.+++.++..-...
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 3458899999999999999999999999986431111 112357899999999999999999999999998632111
Q ss_pred --HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHH
Q 009359 315 --LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (536)
Q Consensus 315 --~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (536)
.....++|.+..++.++++.+|..++.+++.++..-.. .......+|.+..++++.++.+|..|+.++..++
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 12356678888888888999999999999988742111 1122346777778888888888888887777664
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.55 E-value=4.6e-13 Score=131.49 Aligned_cols=337 Identities=10% Similarity=0.063 Sum_probs=207.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhhh
Q 009359 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCV 239 (536)
Q Consensus 166 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~ 239 (536)
|.+..+++++++.+|..|+.+|..++..-++ .......+|.+.++++++++.++..|+.+|..++..-++ ....
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455666666777777777777776632211 112233567777777777777777777777777653111 1113
Q ss_pred hhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhc--------CC--------CcHHHHHHHH
Q 009359 240 AHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLL--------RD--------NEAEVRIAAA 301 (536)
Q Consensus 240 ~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~ll--------~d--------~~~~vr~~a~ 301 (536)
...+|.+.+++. +++..++..++.+|++++..-.... .....+|.+.+++ .+ .++++...|+
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~ 164 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT 164 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHH
Confidence 446777777777 6677777777777777775311100 1115677777777 22 2345566777
Q ss_pred HhHHHHHhhcChH---HHH--HhhhHHHHHhccC------CCHHHHHHHHHHHHHhhhhh--------------------
Q 009359 302 GKVTKICRILNPE---LAI--QHILPCVKELSSD------SSQHVRSALATVIMGMAPIL-------------------- 350 (536)
Q Consensus 302 ~~l~~~~~~~~~~---~~~--~~i~~~l~~l~~d------~~~~vr~~a~~~l~~l~~~~-------------------- 350 (536)
.+|..++.. ++ .+. +.++|.+..++.+ .+.+++..++..+..++...
T Consensus 165 ~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T 1xm9_A 165 GCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccc
Confidence 777777753 22 111 1445555544432 23334444444444432100
Q ss_pred --------------------------------CHH-HHHHhHHHHHHHhhCC-CCHHHHHHHHHhhHHHHhhhchh----
Q 009359 351 --------------------------------GKD-ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGID---- 392 (536)
Q Consensus 351 --------------------------------~~~-~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~---- 392 (536)
+.+ .+....++.+..++.+ .++.+++.|+.++..++..-+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~ 322 (457)
T 1xm9_A 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHH
Confidence 000 0113346666777764 45899999999999987532221
Q ss_pred ---HH-HhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHhcCcc------hHHHHHHHHHHH
Q 009359 393 ---LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKV------YSIRDAAANNVK 461 (536)
Q Consensus 393 ---~~-~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~------~~Vr~~a~~~l~ 461 (536)
.+ ....+|.|.+++.+++..+|..++.++..++..-... ......+|.+.+++...+ ..+...++.+++
T Consensus 323 ~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ 402 (457)
T 1xm9_A 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHH
Confidence 11 1467899999999999999999999999987643221 234567888888888653 368888888888
Q ss_pred HHHHHhChh---hhhhchhHHHHhhccCC-ChHHHHHHHHHHHHHhh
Q 009359 462 RLAEEFGPD---WAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAP 504 (536)
Q Consensus 462 ~l~~~~~~~---~~~~~i~~~l~~~~~d~-~~~~r~~~~~~l~~l~~ 504 (536)
.+...-... ......++.|.++++++ +..++..|.+.+.++..
T Consensus 403 ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 887543221 12256788899998888 88999999999987764
No 60
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.6e-10 Score=114.48 Aligned_cols=506 Identities=11% Similarity=0.097 Sum_probs=305.7
Q ss_pred HHHHHHH--hcChhHHHHHHHhhhHHHHHHhhChHhhhhcccccccc-c------cCCchHHH-HHHHHHHhchhcccCC
Q 009359 11 IAVLIDE--LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N------NDDDDEVL-LAMAEELGVFIPYVGG 80 (536)
Q Consensus 11 i~~l~~~--l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~------~d~~~~vr-~~a~~~l~~l~~~~~~ 80 (536)
+..++.. ++...+++|-.++-.+.++-... ++.+.+.+..++.. + .+.++-+. ..+..++-.+++.+..
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s 248 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCS 248 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHH
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHH
Confidence 4444433 34667788888876666654433 34445555555542 1 12233221 2222233222221110
Q ss_pred c-cchhccchHHHhhh-cCcchHHHHHHHHHHHHHHhhcC-hhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCC
Q 009359 81 L-EYANVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMR-EQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157 (536)
Q Consensus 81 ~-~~~~~ll~~l~~l~-~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (536)
. ...+...+.+.... +.++..+...+++.+...|..-. .+.+.....+++..+.++ ..+|..|+..+..++...+
T Consensus 249 ~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~ 326 (778)
T 3opb_A 249 EIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTK 326 (778)
T ss_dssp HHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGT
T ss_pred HHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCC
Confidence 0 01122234444444 34556677777777777665322 344556677888888765 4678877777777654332
Q ss_pred h--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh-hh--hHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhc
Q 009359 158 E--ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AH--LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGK 231 (536)
Q Consensus 158 ~--~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-~~--~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~ 231 (536)
. ....++.+.+.+.+.+++...|..|++.|+.+...-.- +. ..+.+++.+.+++++ .+..+...++..+..+..
T Consensus 327 ~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 327 LTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp CTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred CCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 2 24566888899988887766799999999988632111 11 124467778888875 566788888899998887
Q ss_pred ccCch----hhhhhhHHHHHHhc----CCCCHHHHHHHHHHHHH-HHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHH
Q 009359 232 LLEPQ----DCVAHILPVIVNFS----QDKSWRVRYMVANQLYE-LCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAG 302 (536)
Q Consensus 232 ~~~~~----~~~~~l~~~l~~~~----~d~~~~vR~~~~~~l~~-l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~ 302 (536)
..+.. .-...+.++..... .+++.. ... ..+.. -...+ ....++|.+..+++..++.+|..|++
T Consensus 407 ~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~--~~~-~~v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A~~ 479 (778)
T 3opb_A 407 LPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK--AAK-EDILLFNEKYI----LRTELISFLKREMHNLSPNCKQQVVR 479 (778)
T ss_dssp CCCCCCCCCC------------------CCTHH--HHH-HHHHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHHHH
T ss_pred CCcccchhhhhhhhhhhhccccCcccCcccccc--cch-HHHHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 65531 11222222221110 001111 001 11111 11111 12358999999999999999999999
Q ss_pred hHHHHHhhcChH--HHHHhhhHHHHHhccCCCHH---HHHHHHHHHHHhhhhhCHHHHH-----HhHHHHHHHhhCC-CC
Q 009359 303 KVTKICRILNPE--LAIQHILPCVKELSSDSSQH---VRSALATVIMGMAPILGKDATI-----EQLLPIFLSLLKD-EF 371 (536)
Q Consensus 303 ~l~~~~~~~~~~--~~~~~i~~~l~~l~~d~~~~---vr~~a~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~ 371 (536)
++..++..-... .+....++.+..++.+.... .|..|+.++..+.....+.... ...+|.+..+|.. +.
T Consensus 480 aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~ 559 (778)
T 3opb_A 480 IIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTP 559 (778)
T ss_dssp HHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSS
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCC
Confidence 999998643221 23455667777777665443 8999999999987554433321 2567888898872 22
Q ss_pred H-------------HHHHHHHHhhHHHHhhhch------h-HHH-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch
Q 009359 372 P-------------DVRLNIISKLDQVNQVIGI------D-LLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (536)
Q Consensus 372 ~-------------~vr~~a~~~l~~l~~~~~~------~-~~~-~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~ 430 (536)
. --+..|+.+|.+++..-++ . .+. ...+|.|..++.+.+..+|.+|++++..++..-..
T Consensus 560 ~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~ 639 (778)
T 3opb_A 560 VDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT 639 (778)
T ss_dssp CSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH
Confidence 1 1266788888888764321 1 223 25889999999999999999999999999864431
Q ss_pred ---hhHH---H---HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh---hhhh-hchhHHHHhhccC--CChHHHHHH
Q 009359 431 ---GFFD---D---KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAM-QHIVPQVLEMINN--PHYLYRMTI 495 (536)
Q Consensus 431 ---~~~~---~---~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~-~~i~~~l~~~~~d--~~~~~r~~~ 495 (536)
+++. + .-++.+..+++..+..+|.+|+.+++.+....+. .... ...+..+.+++++ ++..+|..+
T Consensus 640 i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~ 719 (778)
T 3opb_A 640 IAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRL 719 (778)
T ss_dssp TGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHH
Confidence 3321 1 1377899999999999999999999998654322 1111 3577788888888 899999999
Q ss_pred HHHHHHHhhhh----ChHH----H-HHhHHHHHHhhcCCc
Q 009359 496 LQAISLLAPVM----GSEI----T-CSQLLPVVINASKDS 526 (536)
Q Consensus 496 ~~~l~~l~~~~----~~~~----~-~~~~~~~l~~~l~d~ 526 (536)
+.++.+++... +.+. . ...+...+.+.++.+
T Consensus 720 ~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 720 LMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 99999998732 2121 2 234455566655554
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.54 E-value=4.5e-13 Score=121.04 Aligned_cols=225 Identities=14% Similarity=0.112 Sum_probs=168.1
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh---HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC---HH
Q 009359 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KD 353 (536)
Q Consensus 280 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~ 353 (536)
.-++.+...+.++++++|..|+.++..+...-.. ......++|.+..++.++++.+|..++.+++.++.... ..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4577788888888888888888888665543111 12234567888888888889999999999998875321 11
Q ss_pred HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchh---HHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch
Q 009359 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (536)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~ 430 (536)
......+|.+..+++++++.+|..++.+++.++..-... ......+|.+.+++.++++.+|..++.++..++.....
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 222447899999999999999999999999987543221 22346889999999999999999999999998753221
Q ss_pred h---hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh---hhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 431 G---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 431 ~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
. ......+|.+.+++.++++.||..|+.+|+.++..... .......++.|.+++.+++..+|..+++++++++.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 1 12245688899999999999999999999999742111 12235688999999999999999999999998764
No 62
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.4e-11 Score=120.77 Aligned_cols=475 Identities=10% Similarity=0.048 Sum_probs=282.2
Q ss_pred cccccc---ccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhh----cCcchHHHHHHHHHHHHHHhhcCh---
Q 009359 50 IPFLSE---NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLC----TVEETCVRDKAVESLCRIGSQMRE--- 119 (536)
Q Consensus 50 ~~~l~~---~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~----~~~~~~vr~~a~~~l~~~~~~~~~--- 119 (536)
+.|+.. ...+.++||..+.-.+.++.+..+ ..+.+.+..++..++ .+....--..++.++..+....+.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s 248 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCS 248 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHH
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHH
Confidence 455443 345667888777666666554333 345566666666555 211111123444555554444332
Q ss_pred hhH-HhhHHHHHHHHhc-CcccchhhHHHhhhhhhccCCCh--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHh
Q 009359 120 QDV-VEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYPSAPE--ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (536)
Q Consensus 120 ~~~-~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~ 195 (536)
+-+ .+...+.+....+ .+......++..++...+..-.- -..++..+.|.+++++ ..+|..|+-.|..+...-+
T Consensus 249 ~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~ 326 (778)
T 3opb_A 249 EIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTK 326 (778)
T ss_dssp HHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGT
T ss_pred HHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCC
Confidence 111 1223455544443 23334445566666555443222 2556777888888865 4788888888888765432
Q ss_pred h-hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-hhh--hhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Q 009359 196 A-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDC--VAHILPVIVNFSQD-KSWRVRYMVANQLYELCE 270 (536)
Q Consensus 196 ~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~ 270 (536)
. ..-...+.+.+.+++.+++...|..|++.|+.+...-.- +.+ ...++..+.+++++ .+..+-..++..|.++..
T Consensus 327 ~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 327 LTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp CTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred CCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 2 233456888899888886655699999999998753221 111 23456677777764 455678888888888876
Q ss_pred HhCCCccccchHHHHHHhcCCCcHHH------HHHHHHhHHHH-HhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHH
Q 009359 271 AVGPEPTRSDVVPAYVRLLRDNEAEV------RIAAAGKVTKI-CRILNPELAIQHILPCVKELSSDSSQHVRSALATVI 343 (536)
Q Consensus 271 ~~~~~~~~~~l~~~l~~ll~d~~~~v------r~~a~~~l~~~-~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l 343 (536)
..........=+..|..+.+-..|+. .... ..+..+ ...+ +...++|.+..++...++.+|..+++++
T Consensus 407 ~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~-~~v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A~~aL 481 (778)
T 3opb_A 407 LPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAK-EDILLFNEKYI----LRTELISFLKREMHNLSPNCKQQVVRII 481 (778)
T ss_dssp CCCCCCCCCC------------------CCTHHHHH-HHHHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred CCcccchhhhhhhhhhhhccccCcccCcccccccch-HHHHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 64432110111111111111100110 0000 011111 1111 1245678888888889999999999999
Q ss_pred HHhhhhhC--HHHHHHhHHHHHHHhhCCCCHH---HHHHHHHhhHHHHhhhchhHHH-----hhHHHHHHHhhcC-CCh-
Q 009359 344 MGMAPILG--KDATIEQLLPIFLSLLKDEFPD---VRLNIISKLDQVNQVIGIDLLS-----QSLLPAIVELAED-RHW- 411 (536)
Q Consensus 344 ~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~l~~~~~~~~~~-----~~i~~~l~~~~~~-~~~- 411 (536)
..++..-. .....+-.++.++..+.+.... +|..|+.+|.++.-...+.... ...+|.|.+++.. +..
T Consensus 482 ~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~ 561 (778)
T 3opb_A 482 YNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD 561 (778)
T ss_dssp HHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcc
Confidence 99975422 1223356678888988877544 8999999999987443332211 2677888888872 221
Q ss_pred ------------HHHHHHHHHHHHHHhhhch-------hhHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh--
Q 009359 412 ------------RVRLAIIEYIPLLASQLGV-------GFFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-- 469 (536)
Q Consensus 412 ------------~~R~~a~~~l~~l~~~~~~-------~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-- 469 (536)
.-+..|+.++..++..-++ ..+. ...+|.+..++.+++..||.+|+++++.+...-..
T Consensus 562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~ 641 (778)
T 3opb_A 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIA 641 (778)
T ss_dssp SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTG
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 2377899999999876421 1233 35789999999999999999999999999964321
Q ss_pred -hhhh-h--c---hhHHHHhhccCCChHHHHHHHHHHHHHhhhhCh---HHHH-HhHHHHHHhhcCC--ccchhhh
Q 009359 470 -DWAM-Q--H---IVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITC-SQLLPVVINASKD--SESVAVT 532 (536)
Q Consensus 470 -~~~~-~--~---i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~~~-~~~~~~l~~~l~d--~~~~vr~ 532 (536)
.+.. + . -++.|..++...|..+|..|.++++.+....+. ..+. +..++.+..++++ +.+.+|+
T Consensus 642 ~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~ 717 (778)
T 3opb_A 642 AKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQ 717 (778)
T ss_dssp GGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHH
Confidence 1111 1 1 266788889899999999999999998543321 2222 2466777777777 6666654
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.54 E-value=1e-11 Score=122.67 Aligned_cols=342 Identities=11% Similarity=0.054 Sum_probs=229.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc----h
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----Q 236 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~ 236 (536)
-++.+..++.++++.++..|+.+|..++..... .......+|.|.+++.+++..++..|+.+|..++..-+. .
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 356677777888888888888888888743221 112233678888889888889999999999888753211 1
Q ss_pred hhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhc------------------CCCcHHH
Q 009359 237 DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLL------------------RDNEAEV 296 (536)
Q Consensus 237 ~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~ll------------------~d~~~~v 296 (536)
......+|.+.+++.+ .+..++..++.+|.+++..-... ......+|.+.+++ ...+++|
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 2234577888888775 57788888888888887521100 01123467777655 1235788
Q ss_pred HHHHHHhHHHHHhhcC--hHHHH--HhhhHHHHHhcc------CCCHHHHHHHHHHHHHhhhhhCHH-------------
Q 009359 297 RIAAAGKVTKICRILN--PELAI--QHILPCVKELSS------DSSQHVRSALATVIMGMAPILGKD------------- 353 (536)
Q Consensus 297 r~~a~~~l~~~~~~~~--~~~~~--~~i~~~l~~l~~------d~~~~vr~~a~~~l~~l~~~~~~~------------- 353 (536)
+..|..+|..++..-. ...+. ..+++.|..++. +.+......++.+|..++.....+
T Consensus 209 ~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 9999988888875321 11111 233344444332 345566777777776665432110
Q ss_pred --------------H-HHHhHHHHHHHhhC-CCCHHHHHHHHHhhHHHHhhhch--h----HH-HhhHHHHHHHhhcCCC
Q 009359 354 --------------A-TIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI--D----LL-SQSLLPAIVELAEDRH 410 (536)
Q Consensus 354 --------------~-~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~--~----~~-~~~i~~~l~~~~~~~~ 410 (536)
. +....++.++.+++ ..++.+++.|+.+|..++..-+. . .+ .+..+|.|.+++.+++
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~ 368 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 0 11345677888885 45789999999999999743211 1 11 1466999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHhcCc--------chHHHHHHHHHHHHHHHHhCh---hhhhhchhH
Q 009359 411 WRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLKDK--------VYSIRDAAANNVKRLAEEFGP---DWAMQHIVP 478 (536)
Q Consensus 411 ~~~R~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~--------~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~ 478 (536)
..++..++.+|..++..... ..+....+|.+.++|.+. ...++..|+.+|+.++..-.. .......+|
T Consensus 369 ~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~ 448 (584)
T 3l6x_A 369 ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIE 448 (584)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChH
Confidence 99999999999999875443 234567889999998865 357888999999988743111 122367899
Q ss_pred HHHhhccCC--ChHHHHHHHHHHHHHhhh
Q 009359 479 QVLEMINNP--HYLYRMTILQAISLLAPV 505 (536)
Q Consensus 479 ~l~~~~~d~--~~~~r~~~~~~l~~l~~~ 505 (536)
.|.+++.+. ...++..|.+++..+...
T Consensus 449 ~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 449 KLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 999998875 788999999999988643
No 64
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.52 E-value=8.2e-12 Score=123.40 Aligned_cols=336 Identities=14% Similarity=0.102 Sum_probs=231.7
Q ss_pred hHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-
Q 009359 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP- 274 (536)
Q Consensus 199 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~- 274 (536)
+.+.-+|.+.+++.+.++.++..|+.++..++..-.+ .......+|.|.+++.+++..++..++.+|.+++..-+.
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 3344568888899999999999999999888753222 122345789999999999999999999999999742111
Q ss_pred --C-ccccchHHHHHHhcCC-CcHHHHHHHHHhHHHHHhhcChH-HHHHhhhHHHHHhc------------------cCC
Q 009359 275 --E-PTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELS------------------SDS 331 (536)
Q Consensus 275 --~-~~~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~~~-~~~~~i~~~l~~l~------------------~d~ 331 (536)
. ......+|.++.+++. .+.+++..++.+|..++..-..+ .+....+|.|..++ ...
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 1 1123578999999985 67889999999998887632211 22344556666543 123
Q ss_pred CHHHHHHHHHHHHHhhhhhC--HHHHH--HhHHHHHHHhhC------CCCHHHHHHHHHhhHHHHhhhch----------
Q 009359 332 SQHVRSALATVIMGMAPILG--KDATI--EQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGI---------- 391 (536)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~~~--~~~~~--~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~---------- 391 (536)
+..++..++.+|..++..-. ..... .-+++.++..++ +.+....+.++.+|.+++.....
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 57899999999999975321 11111 223444555543 34556777788888777644211
Q ss_pred -----------------hHH-HhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhhch---h---h-HHHHHHHHHHHHh
Q 009359 392 -----------------DLL-SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV---G---F-FDDKLGALCMQWL 445 (536)
Q Consensus 392 -----------------~~~-~~~i~~~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~---~---~-~~~~l~~~l~~~l 445 (536)
+.+ ....++.+..++. ..+..+++.++.+|..++..-++ . . .....+|.+.+++
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 111 1245677777775 45789999999999999753211 1 1 1245699999999
Q ss_pred cCcchHHHHHHHHHHHHHHHHhChh-hhhhchhHHHHhhccCC--------ChHHHHHHHHHHHHHhhhhC---hHHHHH
Q 009359 446 KDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNP--------HYLYRMTILQAISLLAPVMG---SEITCS 513 (536)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~--------~~~~r~~~~~~l~~l~~~~~---~~~~~~ 513 (536)
..++..|+..|+.+|+.++...... .+....+|.|.+++.++ +..+...++.++++++..-. ......
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~ 444 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 9999999999999999998764432 33467899999988875 35788899999998864311 223456
Q ss_pred hHHHHHHhhcCCc--cchhhhcc
Q 009359 514 QLLPVVINASKDS--ESVAVTYS 534 (536)
Q Consensus 514 ~~~~~l~~~l~d~--~~~vr~~a 534 (536)
..+|.|..++.+. .+.+++.|
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~A 467 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAA 467 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHH
T ss_pred CChHHHHHHHhCCCCChHHHHHH
Confidence 7899999999986 55665544
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.52 E-value=2.6e-12 Score=126.12 Aligned_cols=329 Identities=12% Similarity=0.071 Sum_probs=227.4
Q ss_pred HHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-hC--CCcc
Q 009359 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA-VG--PEPT 277 (536)
Q Consensus 204 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~-~~--~~~~ 277 (536)
+|.+..+++++++.++..|+.++..++..-++ .......+|.+.++++++++.++..++.+|.+++.. -. ....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46777888888999999999999999854332 223456899999999999999999999999999852 00 0011
Q ss_pred ccchHHHHHHhcC-CCcHHHHHHHHHhHHHHHhhcChH-HHHHhhhHHHHHhc--------cCC--------CHHHHHHH
Q 009359 278 RSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELS--------SDS--------SQHVRSAL 339 (536)
Q Consensus 278 ~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~i~~~l~~l~--------~d~--------~~~vr~~a 339 (536)
....+|.+++++. +.+++++..|+.+|..++..-... .+....+|.+..++ .++ +..+...+
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 2357999999998 788999999999999999752222 23347778888777 222 35566799
Q ss_pred HHHHHHhhhhhCHHH---HH--HhHHHHHHHhhCC------CCHHHHHHHHHhhHHHHhh--------------------
Q 009359 340 ATVIMGMAPILGKDA---TI--EQLLPIFLSLLKD------EFPDVRLNIISKLDQVNQV-------------------- 388 (536)
Q Consensus 340 ~~~l~~l~~~~~~~~---~~--~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~-------------------- 388 (536)
+.++..++.. ++. .. +..+|.+..++++ .+..+++.++..+..+...
T Consensus 164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999864 221 12 1567777777763 3334555555555554311
Q ss_pred --------h------------------------chhH-HHhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhhchh---
Q 009359 389 --------I------------------------GIDL-LSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG--- 431 (536)
Q Consensus 389 --------~------------------------~~~~-~~~~i~~~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~--- 431 (536)
+ |.+. +....++.+..++.+ ++..+++.++.++..++..-++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 0 0011 123456666677654 46889999999999987533221
Q ss_pred ----hH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh-hhhhchhHHHHhhccCCCh------HHHHHHHHHH
Q 009359 432 ----FF-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHY------LYRMTILQAI 499 (536)
Q Consensus 432 ----~~-~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~------~~r~~~~~~l 499 (536)
.+ ....+|.+.+++.+.+..||..|+++|..++..-... .+....+|.|.+++..++. .+...++.++
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l 401 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH
Confidence 11 1346799999999999999999999999998642211 2235688999998887643 5777888899
Q ss_pred HHHhhhhCh---HHHHHhHHHHHHhhcCCc-cchhhhcc
Q 009359 500 SLLAPVMGS---EITCSQLLPVVINASKDS-ESVAVTYS 534 (536)
Q Consensus 500 ~~l~~~~~~---~~~~~~~~~~l~~~l~d~-~~~vr~~a 534 (536)
+.+...-+. .......+|.|..+++.+ .+.|++.|
T Consensus 402 ~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 888754332 123446789999999988 77777654
No 66
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.51 E-value=1.5e-10 Score=123.39 Aligned_cols=443 Identities=9% Similarity=-0.013 Sum_probs=276.4
Q ss_pred CCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhh----cCh---hhHHhhHHHHH
Q 009359 58 DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRE---QDVVEHFIPLV 130 (536)
Q Consensus 58 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~----~~~---~~~~~~l~~~l 130 (536)
++++..|+.|-..|..+-+. +..|.....++. .+.++.+|..|+..|.+.+.. +++ ..+...++..+
T Consensus 27 ~p~~~~r~~A~~~L~~~q~s---p~aw~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l 100 (1023)
T 4hat_C 27 QGSGVQQKQAQEILTKFQDN---PDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMI 100 (1023)
T ss_dssp HCCHHHHHHHHHHHHHHHHC---TTGGGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcC---ccHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHH
Confidence 33445788888888877553 345555544443 355789999999999987763 343 33556677777
Q ss_pred HHHhcCc-----ccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---------
Q 009359 131 KRLAAGE-----WFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--------- 196 (536)
Q Consensus 131 ~~l~~~~-----~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--------- 196 (536)
.....++ ...+|...+.+++.+....-++.++.+++.+..+++. ++......+..|..+.+....
T Consensus 101 ~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~ 179 (1023)
T 4hat_C 101 ISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQA 179 (1023)
T ss_dssp HHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHH
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHH
Confidence 6665443 2345556677777766554334566778888887764 345667777777776665321
Q ss_pred ---------hhhHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccCchh-hhhhhHHHHH-HhcCCCCHHHHHHHHHH
Q 009359 197 ---------AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQD-CVAHILPVIV-NFSQDKSWRVRYMVANQ 264 (536)
Q Consensus 197 ---------~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~-~~~~d~~~~vR~~~~~~ 264 (536)
....+.+++.+.+.+.+ .++.+...++++++....-++-.. ..+.+++.+. ..+. ++..|.+++++
T Consensus 180 r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ec 257 (1023)
T 4hat_C 180 KALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKC 257 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHH
Confidence 01134456666666653 456788889999999887666532 2345777777 6665 46799999999
Q ss_pred HHHHHHH-h-CCC-ccccch-------HHHH-HHh-------------cCCCcHHHHHHHHHhHHHHHhhcCh-----H-
Q 009359 265 LYELCEA-V-GPE-PTRSDV-------VPAY-VRL-------------LRDNEAEVRIAAAGKVTKICRILNP-----E- 314 (536)
Q Consensus 265 l~~l~~~-~-~~~-~~~~~l-------~~~l-~~l-------------l~d~~~~vr~~a~~~l~~~~~~~~~-----~- 314 (536)
|..+... . +.. .+.+.+ ++.+ ..+ -.+.+.+.....+..+..+++.... +
T Consensus 258 L~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~ 337 (1023)
T 4hat_C 258 LTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDES 337 (1023)
T ss_dssp HHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGG
T ss_pred HHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9998752 1 121 111111 1211 111 1234556655555555555543211 1
Q ss_pred --HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC--------HHHHHHhHHHHHHHhhCCCC-------------
Q 009359 315 --LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--------KDATIEQLLPIFLSLLKDEF------------- 371 (536)
Q Consensus 315 --~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~~------------- 371 (536)
......+..+......+++.+-..+++.+..+....- ...+...+++.+..-+.=+.
T Consensus 338 ~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~ 417 (1023)
T 4hat_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIV 417 (1023)
T ss_dssp GHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEE
T ss_pred hhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHH
Confidence 1122223345555566778887777777777765322 12233456666666543211
Q ss_pred --------HHHHHHHH-HhhHHHHhhhchhHHHhhHHHHHHHhhcC--CChHHHHHHHHHHHHHHhhhchh---hHHHHH
Q 009359 372 --------PDVRLNII-SKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFDDKL 437 (536)
Q Consensus 372 --------~~vr~~a~-~~l~~l~~~~~~~~~~~~i~~~l~~~~~~--~~~~~R~~a~~~l~~l~~~~~~~---~~~~~l 437 (536)
........ .+|..+....+. ...+.+++.+.+.+.+ .+|+.|++++.+++.+++...++ .+...+
T Consensus 418 ~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~v 496 (1023)
T 4hat_C 418 REFVKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTV 496 (1023)
T ss_dssp ECSSCCGGGHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 00111011 445555544444 3446677777766654 67999999999999999877654 345677
Q ss_pred HHHHHHHhc-----CcchHHHHHHHHHHHHHHHHhChh-hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHH
Q 009359 438 GALCMQWLK-----DKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 510 (536)
Q Consensus 438 ~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~ 510 (536)
+|.++.++. |+...||..+++++|++.+.+... ...+.+++.+.+.+.++++.+...|++++..+++.++...
T Consensus 497 i~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l 575 (1023)
T 4hat_C 497 IKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF 575 (1023)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888876 566778899999999998876432 1235666677777788889999999999999999988654
No 67
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.51 E-value=1.6e-11 Score=130.76 Aligned_cols=492 Identities=10% Similarity=0.065 Sum_probs=280.6
Q ss_pred cHHHHHHHhcCh--hHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCCcc---ch
Q 009359 10 PIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE---YA 84 (536)
Q Consensus 10 ~i~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~ 84 (536)
.|...++...++ |++.|.+|-+.|.++-. .|+ .+......+..-...++.+|..++..|...++.++... ..
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~--sp~-aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~ 83 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS--SST-GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL 83 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH--STT-HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc--Chh-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 344555333344 78889999888877733 333 34444444432212278899999998887766333320 33
Q ss_pred hccchHHHhhhc-----CcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH
Q 009359 85 NVLLPPLETLCT-----VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA 159 (536)
Q Consensus 85 ~~ll~~l~~l~~-----~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 159 (536)
..+-..+..++. +....+|.....++..++...-++ .|+..++-+..+....+. + .+...+
T Consensus 84 ~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~--~-~~~~~~---------- 149 (980)
T 3ibv_A 84 QMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQ--S-EFSNFY---------- 149 (980)
T ss_dssp HHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCC--H-HHHHHH----------
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCCh--h-HHHHHH----------
Confidence 444444444333 235678888888888777765443 344455555444433211 1 011110
Q ss_pred HHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc
Q 009359 160 LKTELRTIYRQLCQDD----MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~----~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
-.+++.+.+=+.|. +..........-..+... +-....+..+..+.......++.++..++++++.....++.
T Consensus 150 --LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~-~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~ 226 (980)
T 3ibv_A 150 --LKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRAN-DMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI 226 (980)
T ss_dssp --HHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH
T ss_pred --HHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhc-cHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH
Confidence 01111111211121 111111110000111111 00111233333344443446778889999999999886665
Q ss_pred hhh-hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH------HHHHhcC-CCcHHHHHHHHHhHHHH
Q 009359 236 QDC-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP------AYVRLLR-DNEAEVRIAAAGKVTKI 307 (536)
Q Consensus 236 ~~~-~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~------~l~~ll~-d~~~~vr~~a~~~l~~~ 307 (536)
..+ .+.+++.+.+++.+ +.+|.+++++|..+...-........++. .+..+.. +.+.+++...++-+..+
T Consensus 227 ~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ 304 (980)
T 3ibv_A 227 NLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQ 304 (980)
T ss_dssp HHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred HhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 322 35678888888876 68999999999998865322111111221 1111122 45667665555444433
Q ss_pred Hhh------cC----hH------HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH--------H---HHHHhHH
Q 009359 308 CRI------LN----PE------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--------D---ATIEQLL 360 (536)
Q Consensus 308 ~~~------~~----~~------~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------~---~~~~~l~ 360 (536)
+.. .+ .+ .....+++.+.....++++.|-..++..+..+...... + .+...++
T Consensus 305 ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll 384 (980)
T 3ibv_A 305 GVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLL 384 (980)
T ss_dssp HHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 322 11 00 22356778888888888888888777777766543211 1 2344555
Q ss_pred HHHHHhhC-------CC-----C----HHHHHHHHHhhHHHHhhhchhHHHh----hHHHHHHHhhc---CCChHHHHHH
Q 009359 361 PIFLSLLK-------DE-----F----PDVRLNIISKLDQVNQVIGIDLLSQ----SLLPAIVELAE---DRHWRVRLAI 417 (536)
Q Consensus 361 ~~l~~~l~-------d~-----~----~~vr~~a~~~l~~l~~~~~~~~~~~----~i~~~l~~~~~---~~~~~~R~~a 417 (536)
+.+..-++ |+ + .+.|.... .+-..+..++++...+ .+.+.+.+.+. +.+|+.++++
T Consensus 385 ~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~Eaa 463 (980)
T 3ibv_A 385 EAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFA 463 (980)
T ss_dssp HHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 55555543 11 1 14677766 6777777888877666 56666666552 4579999999
Q ss_pred HHHHHHHHhhhchh--------hHHHHHHHHHHHHhc-----CcchHHHHHHHHHHHHHHHHhChh-hhhhchhHHHHh-
Q 009359 418 IEYIPLLASQLGVG--------FFDDKLGALCMQWLK-----DKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLE- 482 (536)
Q Consensus 418 ~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~- 482 (536)
+.+++.+++.+... ...+.+++.+..++. ++.+.||..++++++++.+.+... .....+++.+..
T Consensus 464 L~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~ 543 (980)
T 3ibv_A 464 LYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGP 543 (980)
T ss_dssp HHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTST
T ss_pred HHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhcc
Confidence 99999999876431 123457787777765 889999999999999999887542 122344444444
Q ss_pred -hccCCChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhcC
Q 009359 483 -MINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASK 524 (536)
Q Consensus 483 -~~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~ 524 (536)
.+.+++..+|..|..++.++++.++... +.+.++..+..++.
T Consensus 544 ~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 544 RGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp TTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred ccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 5557889999999999999999887643 23445555555444
No 68
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.50 E-value=2e-10 Score=122.42 Aligned_cols=516 Identities=13% Similarity=0.127 Sum_probs=300.3
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccc------ccccc--CCchHHHHHHHHHHhchh----ccc
Q 009359 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPF------LSENN--DDDDEVLLAMAEELGVFI----PYV 78 (536)
Q Consensus 11 i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~------l~~~~--d~~~~vr~~a~~~l~~l~----~~~ 78 (536)
+..++..+.+ ++.|..|++.|..+...-........++.. +..+. +++.+++...++.+..+. ...
T Consensus 235 l~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~ 312 (980)
T 3ibv_A 235 MNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIK 312 (980)
T ss_dssp HHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445556654 678999999998876543322222233322 22222 456666665555543221 111
Q ss_pred CCc------------cchhccchHHHhhhcCcchHHHHHHHHHHHHHHhhcCh--------hhHHhhHHHHHH----HHh
Q 009359 79 GGL------------EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--------QDVVEHFIPLVK----RLA 134 (536)
Q Consensus 79 ~~~------------~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~----~l~ 134 (536)
..+ .....+++.+.....+++..|-..++..+..+...... +...+.+..++. ++.
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~ 392 (980)
T 3ibv_A 313 SDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMK 392 (980)
T ss_dssp TSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred cCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHcc
Confidence 111 34456778877777888888888888888777654321 222222222222 222
Q ss_pred cCc---cc------------chhhHHHhhhhhhccCCChH-HHH----HHHHHHHHhcC---CCChHHHHHHHHHHHHHH
Q 009359 135 AGE---WF------------TARVSSCGLFHVAYPSAPEA-LKT----ELRTIYRQLCQ---DDMPMVRRSAATNLGKFA 191 (536)
Q Consensus 135 ~~~---~~------------~~r~~a~~~l~~~~~~~~~~-~~~----~l~~~l~~ll~---d~~~~vr~~a~~~l~~~~ 191 (536)
-++ +. ..|.... .+-.++..++++ +.. .+.+.+.+.+. +.+|..+++++.+++.++
T Consensus 393 yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~ia 471 (980)
T 3ibv_A 393 YDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFG 471 (980)
T ss_dssp CCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence 111 11 2354444 333334444444 455 44455555542 457999999999999999
Q ss_pred HHHhhh--------hhHHHHHHHHHHhhc-----CcchHHHHHHHHhHHHhhcccCc-hhhhhhhHHHHHH--hcCCCCH
Q 009359 192 ATVEAA--------HLKSEIMSIFEELTQ-----DDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVN--FSQDKSW 255 (536)
Q Consensus 192 ~~~~~~--------~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~--~~~d~~~ 255 (536)
+.+... ...+.+++.+..+++ ++.+.||..++++++..++.+.. ..+.+.+++.+.. .+.+++.
T Consensus 472 E~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~ 551 (980)
T 3ibv_A 472 EGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNE 551 (980)
T ss_dssp TTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCT
T ss_pred hhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCCh
Confidence 876531 234467787777765 77899999999999999988764 3456677777777 7778899
Q ss_pred HHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCC-----C----------------cHHHHHHHHHhHHHHHhhcC
Q 009359 256 RVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRD-----N----------------EAEVRIAAAGKVTKICRILN 312 (536)
Q Consensus 256 ~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d-----~----------------~~~vr~~a~~~l~~~~~~~~ 312 (536)
+||..++.+|..+++..+.... .+.++..+..++.- . ..+-+....++++.+....+
T Consensus 552 ~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 552 RVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp TTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 9999999999999998876542 22334444333431 1 01246678888888887654
Q ss_pred --hH---HHHHhhhHH----HHHhccC---C-CHHHHH-HHHHHHHHhhhhhCH--------HHHHHhHHHHHHHhhC--
Q 009359 313 --PE---LAIQHILPC----VKELSSD---S-SQHVRS-ALATVIMGMAPILGK--------DATIEQLLPIFLSLLK-- 368 (536)
Q Consensus 313 --~~---~~~~~i~~~----l~~l~~d---~-~~~vr~-~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~~l~-- 368 (536)
.+ ...+.+++. +...+.. . +...+. ..+.+++.+++.+.. .......++.+...+.
T Consensus 632 ~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~ 711 (980)
T 3ibv_A 632 LTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRM 711 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 22 222333322 2222221 1 222211 345566777776531 2233456666666665
Q ss_pred CCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH--HHHHHHH----HH
Q 009359 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGAL----CM 442 (536)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~--~~~l~~~----l~ 442 (536)
..+..||+++..++..+...+|.+.. +.+-+.+..++.+....--...+..++.+...++.+.+ ...+++. +.
T Consensus 712 ~~~~~irea~~~~~~r~i~~lg~~~~-p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if 790 (980)
T 3ibv_A 712 GFNEDIRGAVRFTSGRIINVVGPDML-PKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIF 790 (980)
T ss_dssp CCSHHHHHHHHHHHHHHTTTTHHHHT-TTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHccHhHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999987632 33333333333333344455678888888888887632 1223332 22
Q ss_pred HHhcCcc---------hHHHHHHHHHHHHHHHHh-Chhhhh-------hchhHHHHhhccC-CChHHHHHHHHHHHHHhh
Q 009359 443 QWLKDKV---------YSIRDAAANNVKRLAEEF-GPDWAM-------QHIVPQVLEMINN-PHYLYRMTILQAISLLAP 504 (536)
Q Consensus 443 ~~l~d~~---------~~Vr~~a~~~l~~l~~~~-~~~~~~-------~~i~~~l~~~~~d-~~~~~r~~~~~~l~~l~~ 504 (536)
..+..+. ..+|++....+..+..+- +.-+.. +.++..+.....+ ++...+..++..+.++..
T Consensus 791 ~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~ 870 (980)
T 3ibv_A 791 SSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVS 870 (980)
T ss_dssp HHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 3444321 236777777777777642 322211 3455555555444 788999999999999988
Q ss_pred hhC--------hHHHHHhHHHHHHhhcCCccchhh
Q 009359 505 VMG--------SEITCSQLLPVVINASKDSESVAV 531 (536)
Q Consensus 505 ~~~--------~~~~~~~~~~~l~~~l~d~~~~vr 531 (536)
..| .+|+.+ +.|.......++..+.+
T Consensus 871 ~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~ 904 (980)
T 3ibv_A 871 LWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTR 904 (980)
T ss_dssp C-------CCHHHHHHH-HHHHHHHGGGC------
T ss_pred HHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChh
Confidence 765 345677 99988888887776553
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.50 E-value=1e-11 Score=119.96 Aligned_cols=247 Identities=13% Similarity=0.035 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHh--CCCccccchHHHHHHhcC-----------CCcHHHHHHHHHhHHHHHhhcC-hH-HH--HHhhhH
Q 009359 260 MVANQLYELCEAV--GPEPTRSDVVPAYVRLLR-----------DNEAEVRIAAAGKVTKICRILN-PE-LA--IQHILP 322 (536)
Q Consensus 260 ~~~~~l~~l~~~~--~~~~~~~~l~~~l~~ll~-----------d~~~~vr~~a~~~l~~~~~~~~-~~-~~--~~~i~~ 322 (536)
.++++|++++..- .........++.+..++. +.++.++..|+.+|..++..-. .. .+ ....+|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 6667776664210 000112246777777773 1357899999999999986432 11 22 245589
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHH-HHhHHHHHHHh-hCCCCHHHHHHHHHhhHHHHhhh-c-hhHH-
Q 009359 323 CVKELSSDSSQHVRSALATVIMGMAPILGK---DAT-IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL- 394 (536)
Q Consensus 323 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~-~~~~- 394 (536)
.+..++.+++..++..++.+|..++..-+. ..+ ....+|.+..+ +...++.++..++.++..+.... + ...+
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999999999999999999753111 222 23567888886 45677899999999998887622 1 1222
Q ss_pred -HhhHHHHHHHhhcCCCh----HHHHHHHHHHHHHHhh--hchhh----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 009359 395 -SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQ--LGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRL 463 (536)
Q Consensus 395 -~~~i~~~l~~~~~~~~~----~~R~~a~~~l~~l~~~--~~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (536)
....+|.|..++.+.+. .++..++.+|..++.. .+++. .....+|.+..++.+.+..++..|+.+|+.+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35688999999886543 4899999999888752 12221 1234688899999999999999999999999
Q ss_pred HHHhChh----hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhC
Q 009359 464 AEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 464 ~~~~~~~----~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~ 507 (536)
+.. .++ ......+|.|.+++..++..+|..+++++.+++..-+
T Consensus 407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 742 111 2336789999999999999999999999999987643
No 70
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.47 E-value=1.3e-14 Score=127.09 Aligned_cols=187 Identities=21% Similarity=0.216 Sum_probs=133.3
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHH
Q 009359 169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248 (536)
Q Consensus 169 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 248 (536)
..+++|+++.||..++..+. . ..+..+++|+++.||..++..+. . +.+..
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~-------~--------~~l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~ 105 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP-------V--------EALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSA 105 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC-------G--------GGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGG
T ss_pred HHHhcCCCHHHHHHHHHhCC-------H--------HHHHHHccCcCHHHHHHHHHHCC-------H--------HHHHH
Confidence 45678999999999888652 1 23566788999999998887632 1 34667
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhc
Q 009359 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 328 (536)
Q Consensus 249 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~ 328 (536)
+++|++|.||..++..+ .. +.+..+++|+++.||.+++..+ +. +.+..+.
T Consensus 106 ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 78899999999887743 11 2455678899999999888732 21 3445677
Q ss_pred cCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcC
Q 009359 329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (536)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~ 408 (536)
+|+++.||..++..+ +. +.+..+++|+++.||..++..+ .. +.+..+++|
T Consensus 156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC
T ss_pred cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcC
Confidence 899999999888752 11 3344678899999999888763 11 346667889
Q ss_pred CChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 009359 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (536)
Q Consensus 409 ~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (536)
++|.||..++..++ .+.+..+ .|+++.||.++.+.||
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 99999999888764 1345455 8999999998877654
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.45 E-value=7.8e-11 Score=120.69 Aligned_cols=308 Identities=14% Similarity=0.104 Sum_probs=194.8
Q ss_pred HHHHHHhcC---CCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcc--------hHHHHHHHHhHHHhhccc
Q 009359 165 RTIYRQLCQ---DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ--------DSVRLLAVEGCGALGKLL 233 (536)
Q Consensus 165 ~~~l~~ll~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~--------~~vr~~a~~~l~~l~~~~ 233 (536)
+..+...+. +.++.+|..|+.+||-+....+. ..+..|...+.+++ +.+|..|+-.|+-+.-..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 334444443 55678899999999887665442 23455555555443 678888888888765444
Q ss_pred CchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh
Q 009359 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (536)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (536)
+.+ .+.+.+...+.+++..+|..++.++|.+.-.-|+....+.++..+ .++.+..+|..++.+|+.+. +|.
T Consensus 469 ~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~g~ 539 (963)
T 4ady_A 469 ANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--YGR 539 (963)
T ss_dssp CCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--TTC
T ss_pred CCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--CCC
Confidence 433 344555556666667778888888877643223222222333332 34666788888888888773 244
Q ss_pred HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH
Q 009359 314 ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (536)
Q Consensus 314 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (536)
+...+.+ +..+..+.+|.+|..++-+++.-.-..|.....+.++. .+..|.+..||..|+.+|+.+.- |.+
T Consensus 540 ~e~~~~l---i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~---~~~~d~~d~VRraAViaLGlI~~--g~~- 610 (963)
T 4ady_A 540 QELADDL---ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH---VAVSDSNDDVRRAAVIALGFVLL--RDY- 610 (963)
T ss_dssp GGGGHHH---HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH---HHHHCSCHHHHHHHHHHHHHHTS--SSC-
T ss_pred hHHHHHH---HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---HhccCCcHHHHHHHHHHHHhhcc--CCH-
Confidence 4322333 33344578899999988888765544455443444433 34467788899999888887632 222
Q ss_pred HHhhHHHHHHH-hhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhh-
Q 009359 394 LSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW- 471 (536)
Q Consensus 394 ~~~~i~~~l~~-~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~- 471 (536)
+ ..+.+.. +..+.++.+|..+..+++.+...-+. ..++..+..+.+|++..||..|+.+||.+........
T Consensus 611 --e-~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 611 --T-TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp --S-SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred --H-HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc
Confidence 2 2333443 45677899999999999887644332 3456677788899999999999999998875432210
Q ss_pred -hhhchhHHHHhhccC--CChHHHHHHHHHHHHH
Q 009359 472 -AMQHIVPQVLEMINN--PHYLYRMTILQAISLL 502 (536)
Q Consensus 472 -~~~~i~~~l~~~~~d--~~~~~r~~~~~~l~~l 502 (536)
....++..|.....| .+...|..+.-+.|-+
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 124556666666655 4677888887777766
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.44 E-value=5.6e-11 Score=114.76 Aligned_cols=290 Identities=11% Similarity=0.035 Sum_probs=196.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh---hHHHHH----------HHHHHhhcCcc--hH-----HHH-------HHHHhHHHh
Q 009359 177 PMVRRSAATNLGKFAATVEAAH---LKSEIM----------SIFEELTQDDQ--DS-----VRL-------LAVEGCGAL 229 (536)
Q Consensus 177 ~~vr~~a~~~l~~~~~~~~~~~---~~~~l~----------~~l~~~l~d~~--~~-----vr~-------~a~~~l~~l 229 (536)
+.+|..|+.+|.+++..-+... ....++ +.+.+++.... ++ ++. .|+.+|..+
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl 175 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 175 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh
Confidence 6899999999999887544311 111122 33344443321 11 554 788888888
Q ss_pred hcccCc--hhhhhhhHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHhC-C-Ccc--ccchHHHHHHhcCCC
Q 009359 230 GKLLEP--QDCVAHILPVIVNFSQ-----------DKSWRVRYMVANQLYELCEAVG-P-EPT--RSDVVPAYVRLLRDN 292 (536)
Q Consensus 230 ~~~~~~--~~~~~~l~~~l~~~~~-----------d~~~~vR~~~~~~l~~l~~~~~-~-~~~--~~~l~~~l~~ll~d~ 292 (536)
+..-.. .......++.+..++. +.+..++..++++|.+++..-. . ... ....+|.++.++...
T Consensus 176 s~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~ 255 (458)
T 3nmz_A 176 SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 255 (458)
T ss_dssp TTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC
Confidence 643111 1112346667766662 1356789999999999984211 0 111 234699999999999
Q ss_pred cHHHHHHHHHhHHHHHhhcCh---HH-HHHhhhHHHHHh-ccCCCHHHHHHHHHHHHHhhhhh-C-HHHH--HHhHHHHH
Q 009359 293 EAEVRIAAAGKVTKICRILNP---EL-AIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPIL-G-KDAT--IEQLLPIF 363 (536)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~---~~-~~~~i~~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~-~-~~~~--~~~l~~~l 363 (536)
+++++..|+.+|..++..-+. .. .....+|.+..+ ....+..++..++.++..++... + ...+ ....+|.+
T Consensus 256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L 335 (458)
T 3nmz_A 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335 (458)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence 999999999999998753111 12 223556777775 56678899999999999988622 1 2222 24578999
Q ss_pred HHhhCCCCH----HHHHHHHHhhHHHHhh--hchhH----HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh-ch--
Q 009359 364 LSLLKDEFP----DVRLNIISKLDQVNQV--IGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GV-- 430 (536)
Q Consensus 364 ~~~l~d~~~----~vr~~a~~~l~~l~~~--~~~~~----~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~-~~-- 430 (536)
..++.+... ++++.++.+|..+... -+.+. .....+|.+..++.+.+..++..++.++..++..- ..
T Consensus 336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 415 (458)
T 3nmz_A 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415 (458)
T ss_dssp HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987654 5899999999888753 12221 22457899999999999999999999999998421 11
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 431 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 431 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
.......+|.+..++.+.+..+|..|+.+|..+...
T Consensus 416 ~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 112345788999999999999999999999999865
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.42 E-value=2.9e-10 Score=116.51 Aligned_cols=331 Identities=14% Similarity=0.057 Sum_probs=221.2
Q ss_pred chHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhc---CcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCC
Q 009359 99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAA---GEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDD 175 (536)
Q Consensus 99 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~---~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~ 175 (536)
....+-.|.-+|+.+......+ .+..+..... +.++.+|..|+..++.+......+ .+..|...+.++
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~~~-----gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~----~~~lL~~~L~~~ 441 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNLLE-----GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD----TTDYLKNIIVEN 441 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCTTT-----HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH----HHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhhccCchHH-----HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHcCc
Confidence 3455667777887775533221 2333333333 345678999999999887776654 344445444443
Q ss_pred C--------hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHH
Q 009359 176 M--------PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247 (536)
Q Consensus 176 ~--------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 247 (536)
+ +.+|..|+.+||-..-..+. +++++.+...+.|++..+|..|+.+++-+--..+.......++..+.
T Consensus 442 ~~~~~~~~~~~ir~gAaLGLGla~~GS~~----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~ 517 (963)
T 4ady_A 442 SGTSGDEDVDVLLHGASLGIGLAAMGSAN----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ 517 (963)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHHSTTCCC----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh
Confidence 3 78999999999986543333 34555666666677778888899998877444444444455555443
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh-cCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHH
Q 009359 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRL-LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE 326 (536)
Q Consensus 248 ~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~ 326 (536)
++.+..+|..++.+|+.+. +|... ..+.+++. ..+.++.+|..++.+++.-.-..|+....+.+ |..
T Consensus 518 ---e~~~e~vrR~aalgLGll~--~g~~e----~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~L---L~~ 585 (963)
T 4ady_A 518 ---ETQHGNITRGLAVGLALIN--YGRQE----LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRL---LHV 585 (963)
T ss_dssp ---HCSCHHHHHHHHHHHHHHT--TTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHH---HHH
T ss_pred ---ccCcHHHHHHHHHHHHhhh--CCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHH---HHH
Confidence 4567789999999998773 44432 33344333 34788999999999988766666665444433 334
Q ss_pred hccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHH-hhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHh
Q 009359 327 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (536)
Q Consensus 327 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 405 (536)
+.+|.+..||++|+.+++.+.-.-. ...|.++. +.++.++.||..++.++|.++..-+. ..++..|..+
T Consensus 586 ~~~d~~d~VRraAViaLGlI~~g~~------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L 655 (963)
T 4ady_A 586 AVSDSNDDVRRAAVIALGFVLLRDY------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPL 655 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTSSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHH
T ss_pred hccCCcHHHHHHHHHHHHhhccCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHH
Confidence 4578889999999999998753311 22344444 45678999999999999998754332 5677788889
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHH
Q 009359 406 AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD--KVYSIRDAAANNVKRLA 464 (536)
Q Consensus 406 ~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~Vr~~a~~~l~~l~ 464 (536)
..|++..||+.|+.+++.+........ ....++..+.+...| +++..|-.+.-+.|.+.
T Consensus 656 ~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 656 TKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 999999999999999999875443321 234455666677765 45677877777777664
No 74
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.41 E-value=9.1e-14 Score=121.68 Aligned_cols=186 Identities=24% Similarity=0.318 Sum_probs=116.0
Q ss_pred HHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 009359 132 RLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT 211 (536)
Q Consensus 132 ~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l 211 (536)
.+..|+++.+|..++..+ +. ..+..+++|+++.||..++..+. . +.+..++
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~~-------~~l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~ll 107 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------PV-------EALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSALM 107 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------CG-------GGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGTT
T ss_pred HHhcCCCHHHHHHHHHhC-------CH-------HHHHHHccCcCHHHHHHHHHHCC-------H--------HHHHHHH
Confidence 344566666666666532 11 13556677888888887776532 1 3455677
Q ss_pred cCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 009359 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD 291 (536)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d 291 (536)
+|+++.||..++..+ +. +.+..+++|+++.||..++..+ + .+.+..+++|
T Consensus 108 ~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~--------~~~l~~l~~D 157 (244)
T 1lrv_A 108 FDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRFMRD 157 (244)
T ss_dssp TCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGTTTC
T ss_pred cCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------C--------HHHHHHHHcC
Confidence 788888887777643 11 2344567788888888776631 1 1234466778
Q ss_pred CcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCC
Q 009359 292 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 371 (536)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 371 (536)
+++.||.+++.+ ++. +.+..+.+|++|.||..++..+ . .+.+..+++|++
T Consensus 158 ~d~~VR~~aa~~-------l~~--------~ll~~ll~D~d~~VR~aaa~~l---~------------~~~L~~Ll~D~d 207 (244)
T 1lrv_A 158 EDRQVRKLVAKR-------LPE--------ESLGLMTQDPEPEVRRIVASRL---R------------GDDLLELLHDPD 207 (244)
T ss_dssp SCHHHHHHHHHH-------SCG--------GGGGGSTTCSSHHHHHHHHHHC---C------------GGGGGGGGGCSS
T ss_pred CCHHHHHHHHHc-------CCH--------HHHHHHHcCCCHHHHHHHHHhC---C------------HHHHHHHHcCCC
Confidence 888888877765 111 3444567788888888877652 1 133556678888
Q ss_pred HHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009359 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (536)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~ 422 (536)
+.||..++..++ .+.+..+ +|++|.||.++...++
T Consensus 208 ~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 208 WTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 888888777654 1345555 7888888887776543
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.39 E-value=2.1e-11 Score=106.61 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--- 235 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--- 235 (536)
....+.+..+++++++.+|..|+.+|+.++...+. .......+|.+.+++.++++.+|..|+.+++.++..-+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34567888899999999999999999999853221 122235789999999999999999999999999853322
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC
Q 009359 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 312 (536)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~ 312 (536)
.......+|.+..+++++++.+|..++.+|++++..-.. .......+|.+.+++.++++.+|..|+.++..++..-.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 122345889999999999999999999999998742110 01123578889999998889999999999998876321
Q ss_pred hH---HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhh
Q 009359 313 PE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (536)
Q Consensus 313 ~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~ 347 (536)
.. ......++.+..++.++++.+|..++.++..++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 11 122345666777777777777777777777665
No 76
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.37 E-value=1.8e-10 Score=119.66 Aligned_cols=279 Identities=13% Similarity=0.172 Sum_probs=208.9
Q ss_pred HHHHHHhHHHhhc-ccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCCc
Q 009359 219 RLLAVEGCGALGK-LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNE 293 (536)
Q Consensus 219 r~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~ll~d~~ 293 (536)
+..+...+..+.. ..+.......++..+.+.+.++... ..++..+..++...+... +.-.++|.++..+.|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 3445555554433 2222222346788888888887444 888899999987765432 22246788899999999
Q ss_pred HHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCC-CHHHHHHHHHHHHHhhhhhCHH--HHHHhHHHHHHHhhCCC
Q 009359 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE 370 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~ 370 (536)
..||.+|..+...+...+.+... ..++|.+...+.+. .|..+.+++..++.++...+.. ...+.++|.+..++.|.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 187 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT 187 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence 99999999999999999988876 77788887766544 6999999999999999765322 23588999999999999
Q ss_pred CHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc----hhhHHHHHHHHHHHHhc
Q 009359 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCMQWLK 446 (536)
Q Consensus 371 ~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~ 446 (536)
.++|+.+|..++..+|..+++..+ +.++|.|.+.+.+++. .-+++..++...= .......+.|++.+.|.
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~ 261 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLN 261 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhc
Confidence 999999999999999999998877 7789999999988843 2333333332110 01124678999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHhhccC-CChHHHHHHHHHHHHHhhhh
Q 009359 447 DKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLEMINN-PHYLYRMTILQAISLLAPVM 506 (536)
Q Consensus 447 d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d-~~~~~r~~~~~~l~~l~~~~ 506 (536)
++...++..++-.+..+++-...+... ..++|.+...... .++.+|..+-+|+..+-...
T Consensus 262 ~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 262 ERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988765433 4455555554333 58999999999999885543
No 77
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.35 E-value=7.2e-11 Score=103.15 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=82.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhc---hhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch---hh
Q 009359 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF 432 (536)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~ 432 (536)
.+|.+..+++++++.+|..|+.+++.++..-. ........+|.+..++++++..+|..++.++..++..... ..
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444444555445555555555544432110 0011123455555555555566666666666555432111 11
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChh---hhhhchhHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009359 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (536)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~ 504 (536)
.....+|.+.+++.+++..+|..|+.+|+.++...... ......++.|.+++.+++..+|..+.++++.++.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 12346677777777777788888888888777531111 1224577788888888888888888888887763
No 78
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.33 E-value=8.5e-09 Score=112.91 Aligned_cols=508 Identities=10% Similarity=0.040 Sum_probs=282.8
Q ss_pred cCcHHHHHHHhcCh--hHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcc----cCCc
Q 009359 8 LYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGL 81 (536)
Q Consensus 8 ~~~i~~l~~~l~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~----~~~~ 81 (536)
+..+..++....++ +++.|.+|.+.|.++-.. |+ .+..+.-.+. ..+.++.+|..++..|.+.+.. ++..
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 34466777777776 778899999988877432 11 1121222221 2455789999999999877642 1211
Q ss_pred ---cchhccchHHHhhhc---CcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccC
Q 009359 82 ---EYANVLLPPLETLCT---VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS 155 (536)
Q Consensus 82 ---~~~~~ll~~l~~l~~---~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~ 155 (536)
.....++..+..... +++..+|.....++..++..--+ ..++.+++.+..+.+. +...+..+..++..+.+.
T Consensus 86 ~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 86 EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 122334444333211 14688999999999999886433 3356667776666654 234455566665555321
Q ss_pred ------CChH-----------HHHHHHHHHHHhcCC-------------------CChHHHHHHHHHHHHHHHHHhhhhh
Q 009359 156 ------APEA-----------LKTELRTIYRQLCQD-------------------DMPMVRRSAATNLGKFAATVEAAHL 199 (536)
Q Consensus 156 ------~~~~-----------~~~~l~~~l~~ll~d-------------------~~~~vr~~a~~~l~~~~~~~~~~~~ 199 (536)
.... ..+.+++.+..++++ .+..++..+++++..+....+....
T Consensus 164 v~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i 243 (1204)
T 3a6p_A 164 VVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI 243 (1204)
T ss_dssp HHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHH
T ss_pred HccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHH
Confidence 1111 112455555544433 1234666667766655443332222
Q ss_pred H---HHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-hh---hhhhh----HHHHHHhc--------CCCCHHHHHH
Q 009359 200 K---SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QD---CVAHI----LPVIVNFS--------QDKSWRVRYM 260 (536)
Q Consensus 200 ~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~---~~~~l----~~~l~~~~--------~d~~~~vR~~ 260 (536)
. ..+++.+..++.+ +.+|..|+++|..+...... +. ....+ +..+.... .+.+..++..
T Consensus 244 ~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 244 TAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp HTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred HhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 1 2477777777664 57899999999999875432 21 11111 11222221 2234566777
Q ss_pred HHHHHHHHHHHhC----------CCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcC--h-H---HHHHhhhHHH
Q 009359 261 VANQLYELCEAVG----------PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--P-E---LAIQHILPCV 324 (536)
Q Consensus 261 ~~~~l~~l~~~~~----------~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~--~-~---~~~~~i~~~l 324 (536)
.++.+..++..+- .......+++.++.++.+++.+|-..++..+..+.+... . + .+...+++.+
T Consensus 322 l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl 401 (1204)
T 3a6p_A 322 LCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRAS 401 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 7777766653221 111234688999999999998888888888887776532 1 1 2234444444
Q ss_pred HH----hc--cCCC---------------------HHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCC--------
Q 009359 325 KE----LS--SDSS---------------------QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD-------- 369 (536)
Q Consensus 325 ~~----l~--~d~~---------------------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-------- 369 (536)
.. +. .+.+ +..|......+..++...+. .....+.+.+...+.+
T Consensus 402 ~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~-~~l~~v~~~l~~~l~~~l~~~~~~ 480 (1204)
T 3a6p_A 402 MTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK-TSFQMAGEWLKYQLSTFLDAGSVN 480 (1204)
T ss_dssp HHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhhhhcccccc
Confidence 11 10 1100 24566666666666654332 2334444555444332
Q ss_pred -----------------CCHHHHHHHHHhhHHHHhhh---c-hhHHHhhHHHHHHHhh---cCCChHHHHHHHHHHHHHH
Q 009359 370 -----------------EFPDVRLNIISKLDQVNQVI---G-IDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLA 425 (536)
Q Consensus 370 -----------------~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~i~~~l~~~~---~~~~~~~R~~a~~~l~~l~ 425 (536)
+.+...++....++.+...+ . .+.....+.+.+...+ +..++.+|...+.+++.+.
T Consensus 481 ~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~ 560 (1204)
T 3a6p_A 481 SCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALF 560 (1204)
T ss_dssp ----------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHG
T ss_pred cccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 11223344444454444433 1 1111112344444442 3356789999999998887
Q ss_pred hhhch-hhHHHHHHHHHHHHhcC------------cchHHHHHHHHHHHHHHHHhChhhhh--hchhHHHHhhccCC---
Q 009359 426 SQLGV-GFFDDKLGALCMQWLKD------------KVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEMINNP--- 487 (536)
Q Consensus 426 ~~~~~-~~~~~~l~~~l~~~l~d------------~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~--- 487 (536)
..+.. ..+...++..++..+.| .+..||.+|+.++..++..++..... +.+...+..++...
T Consensus 561 ~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l 640 (1204)
T 3a6p_A 561 PFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLL 640 (1204)
T ss_dssp GGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTS
T ss_pred HHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccc
Confidence 76542 22345556666666655 45689999999999999887654322 44555555555433
Q ss_pred ChHHHHHHHHHHHHHhhhhChHH----HHHhHHHHHHhhcC
Q 009359 488 HYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASK 524 (536)
Q Consensus 488 ~~~~r~~~~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~ 524 (536)
+..-+....+++..++..+++.. +.+.+++.+..-.+
T Consensus 641 ~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 641 TQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp CHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 35667778888888876655432 34445554444433
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.33 E-value=1.4e-09 Score=113.08 Aligned_cols=281 Identities=12% Similarity=0.156 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHh-hcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCCh-----HHHHHHHHHHHHhcCCCC
Q 009359 103 RDKAVESLCRIGS-QMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE-----ALKTELRTIYRQLCQDDM 176 (536)
Q Consensus 103 r~~a~~~l~~~~~-~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-----~~~~~l~~~l~~ll~d~~ 176 (536)
+..+...+..+.. ..........+...+.+...++... ..|+..+..++...+. .+.-.+++.+.....|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 3445555555443 2111111124556666666665433 7788888888765533 244456788889999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCc-chHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCCC
Q 009359 177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDK 253 (536)
Q Consensus 177 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~ 253 (536)
..||.+|..+...+++.+++... ..++|.+...+.+. .|..+..|+.+++.+++..+. ....+.++|.+..+..|.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 187 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT 187 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence 99999999999999999887665 78899999888765 699999999999999987754 345778999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHH--HHhhcChHHHHHhhhHHHHHhccCC
Q 009359 254 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTK--ICRILNPELAIQHILPCVKELSSDS 331 (536)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~i~~~l~~l~~d~ 331 (536)
.++|+.++..++..++..+++.. ...++|.+++.+.+++. |-. ++..|+. |....... ....+.|.|..-+.+.
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~-~~~-~~~~l~~~tfv~~v~~~-~l~~~~p~l~r~l~~~ 263 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE-VPE-TVHLLGATTFVAEVTPA-TLSIMVPLLSRGLNER 263 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH-HHH-HHHHHTTCCCCSCCCHH-HHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh-hHH-HHHHhhcCeeEeeecch-hHHHHHHHHHhhhccC
Confidence 99999999999999999888765 46789999999999853 422 2333322 11122222 3467789998888899
Q ss_pred CHHHHHHHHHHHHHhhhhhCHH----HHHHhHHHHHHHhhCC-CCHHHHHHHHHhhHHHHhhhc
Q 009359 332 SQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIG 390 (536)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~ 390 (536)
+..+++.++-.+..+++.+... .|.+.++|.+.+.... .+|++|+.+-+++..+....+
T Consensus 264 ~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 264 ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999877543 4667778877776554 578999999999988876544
No 80
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.31 E-value=2e-08 Score=106.83 Aligned_cols=491 Identities=8% Similarity=0.047 Sum_probs=285.5
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcc----cCCc---c
Q 009359 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGL---E 82 (536)
Q Consensus 10 ~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~----~~~~---~ 82 (536)
.++.++..+.+++++.|.+|.+.|.++-. .|+ .+......+. .+.++.+|..++..|.+.+.. ++.. .
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~--sp~-aw~~~~~iL~--~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~ 103 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE--HPD-AWTRVDTILE--FSQNMNTKYYGLQILENVIKTRWKILPRNQCEG 103 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC--CSC-HHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc--Cch-HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence 67788899999999999999888866532 222 2343344432 345889999999999877652 2211 1
Q ss_pred chhccchHHHhhhcC-----cchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCC-
Q 009359 83 YANVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA- 156 (536)
Q Consensus 83 ~~~~ll~~l~~l~~~-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~- 156 (536)
....++..+.....+ .++.++.....++..++...-++. |+.+++-+..+.+. +...+.....++..+.+.+
T Consensus 104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRT-SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHH
Confidence 345555666555443 246778888889998887643332 44455555444432 2233334444444433221
Q ss_pred -------ChH-----------HHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHH-HHhhcCcc
Q 009359 157 -------PEA-----------LKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHL-KSEIMSIF-EELTQDDQ 215 (536)
Q Consensus 157 -------~~~-----------~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~l~~~l-~~~l~d~~ 215 (536)
+.. ..+.+++.+...++ ..++.+...++++++.+....+...+ .+.+++.+ ...+. +
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~ 259 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--V 259 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--S
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--C
Confidence 111 12345555555553 45678888899999998877654332 24577766 46665 4
Q ss_pred hHHHHHHHHhHHHhhcc-cCc-hhhhhhhH----HHHHHhc-------------CCCCHHHHHHHHHHHHHHHHHhCC--
Q 009359 216 DSVRLLAVEGCGALGKL-LEP-QDCVAHIL----PVIVNFS-------------QDKSWRVRYMVANQLYELCEAVGP-- 274 (536)
Q Consensus 216 ~~vr~~a~~~l~~l~~~-~~~-~~~~~~l~----~~l~~~~-------------~d~~~~vR~~~~~~l~~l~~~~~~-- 274 (536)
+..|..|++++..+... .++ +.....+. ..+...+ .+.+...-...+..+..+++....
T Consensus 260 ~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lI 339 (1073)
T 3gjx_A 260 PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLL 339 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999998764 221 11111111 1111111 122233333445555554443211
Q ss_pred --C-cccc---chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH---------------------------HHHHhhh
Q 009359 275 --E-PTRS---DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---------------------------LAIQHIL 321 (536)
Q Consensus 275 --~-~~~~---~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---------------------------~~~~~i~ 321 (536)
. .... ..+..++.+..-++.++-+.++..+..+.+.+-.+ .+...+.
T Consensus 340 e~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~ 419 (1073)
T 3gjx_A 340 EKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVR 419 (1073)
T ss_dssp HHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHH
T ss_pred hcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 1 1111 12334455556778888888888887776643111 0111111
Q ss_pred HHHHHhcc-C--------------------CCH-HHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCC--CCHHHHHH
Q 009359 322 PCVKELSS-D--------------------SSQ-HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLN 377 (536)
Q Consensus 322 ~~l~~l~~-d--------------------~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~ 377 (536)
..+..-+. . .+. ..+...-+++..+. .++.+.....+++.+.+.+.. .+|..+++
T Consensus 420 ~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea 498 (1073)
T 3gjx_A 420 LLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNT 498 (1073)
T ss_dssp HHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHH
T ss_pred HHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhH
Confidence 21111111 0 000 12223333443333 344455556667777666554 45899999
Q ss_pred HHHhhHHHHhhhchh---HHHhhHHHHHHHhhcCC-----ChHHHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHhcCc
Q 009359 378 IISKLDQVNQVIGID---LLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLKDK 448 (536)
Q Consensus 378 a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~~~-----~~~~R~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~ 448 (536)
++-++|.+.+.+..+ .+...+++.|..+.+.+ ...++...+..++.....+.. ..+.+.++..+++++.|+
T Consensus 499 ~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~ 578 (1073)
T 3gjx_A 499 LCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHET 578 (1073)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcC
Confidence 999999998777642 34566777777766544 234666666778777665432 224455666778889999
Q ss_pred chHHHHHHHHHHHHHHHHhChhhhh----------hchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHH
Q 009359 449 VYSIRDAAANNVKRLAEEFGPDWAM----------QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 510 (536)
Q Consensus 449 ~~~Vr~~a~~~l~~l~~~~~~~~~~----------~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~ 510 (536)
++.|+.+|+.++..++..++..... +.++..+.....+=+..-.....++++.+....|.+.
T Consensus 579 ~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~ 650 (1073)
T 3gjx_A 579 HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQT 650 (1073)
T ss_dssp STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999988765422 2233333333444467778889999999999988653
No 81
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.29 E-value=5.1e-08 Score=103.69 Aligned_cols=444 Identities=8% Similarity=0.010 Sum_probs=260.7
Q ss_pred ccCCchHHHHHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhh----cCh---hhHHhhHHH
Q 009359 56 NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRE---QDVVEHFIP 128 (536)
Q Consensus 56 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~----~~~---~~~~~~l~~ 128 (536)
+.+++++.|+.|-+.|..+-+ .+..|.....+|. .+.++.+|..|+..|.+.+.. +++ ..+...++.
T Consensus 37 ly~p~~~~r~qA~~~L~q~q~---sp~aw~~~~~iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~ 110 (1073)
T 3gjx_A 37 LYHGEGAQQRMAQEVLTHLKE---HPDAWTRVDTILE---FSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVG 110 (1073)
T ss_dssp TTCSSHHHHHHHHHHHHTSSC---CSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHc---CchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHH
Confidence 445667788888888888754 3445554444442 356889999999999998773 343 335566777
Q ss_pred HHHHHhcCc-----ccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---h---
Q 009359 129 LVKRLAAGE-----WFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---A--- 197 (536)
Q Consensus 129 ~l~~l~~~~-----~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~--- 197 (536)
.+.....++ .+.++...+.+++.+....-++.++.+++.+..+++. ++..+...+..|..+.+.+.. .
T Consensus 111 ~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~ 189 (1073)
T 3gjx_A 111 LIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQIT 189 (1073)
T ss_dssp HHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBC
T ss_pred HHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 777655443 2345555666666665443223345566666665543 345666777777777665321 0
Q ss_pred ------------hhHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccCchhh-hhhhHHHH-HHhcCCCCHHHHHHHH
Q 009359 198 ------------HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQDC-VAHILPVI-VNFSQDKSWRVRYMVA 262 (536)
Q Consensus 198 ------------~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l-~~~~~d~~~~vR~~~~ 262 (536)
...+.+++.+...+.+ .++.+...++++++.+..-++-..+ .+.+++.+ ...++ ++..|.+++
T Consensus 190 ~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~ 267 (1073)
T 3gjx_A 190 QVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSL 267 (1073)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHH
Confidence 1124456666666643 4667788889999998887765433 34577766 46665 567999999
Q ss_pred HHHHHHHHHhCCCccccchHHHH-------HHhc-------------CCCcHHHHHHHHHhHHHHHhhcC------hH--
Q 009359 263 NQLYELCEAVGPEPTRSDVVPAY-------VRLL-------------RDNEAEVRIAAAGKVTKICRILN------PE-- 314 (536)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~l~~~l-------~~ll-------------~d~~~~vr~~a~~~l~~~~~~~~------~~-- 314 (536)
.+|..+... ..+.+.+.+...+ ..++ .+.+++.-..-+..+..+++... ++
T Consensus 268 dcL~eIv~k-~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~ 346 (1073)
T 3gjx_A 268 KCLTEIAGV-SVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLR 346 (1073)
T ss_dssp HHHHHHHHS-CSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHhc-cccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccch
Confidence 999998764 1111112221111 1111 22333333333333333333211 11
Q ss_pred HHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHH---------------------------HHHHhHHHHHHHhh
Q 009359 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---------------------------ATIEQLLPIFLSLL 367 (536)
Q Consensus 315 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---------------------------~~~~~l~~~l~~~l 367 (536)
......+..+..+...++..+-..+...+..+...+-.+ .+...+...+..-+
T Consensus 347 ~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m 426 (1073)
T 3gjx_A 347 EALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRM 426 (1073)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhc
Confidence 111223333445555667777777777766654432111 11223333333333
Q ss_pred CCC---------C-----------H--HHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcC--CChHHHHHHHHHHHH
Q 009359 368 KDE---------F-----------P--DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPL 423 (536)
Q Consensus 368 ~d~---------~-----------~--~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~--~~~~~R~~a~~~l~~ 423 (536)
.-+ . . +++...-.++..+. .++.+.....+++.+.+..+. .+|..+.+++.+++.
T Consensus 427 ~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aiga 505 (1073)
T 3gjx_A 427 AKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGS 505 (1073)
T ss_dssp CCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHH
T ss_pred CCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHH
Confidence 211 0 0 12222333333333 334444445667777665543 469999999999999
Q ss_pred HHhhhchh---hHHHHHHHHHHHHhcCc-----chHHHHHHHHHHHHHHHHhChhh-hhhchhHHHHhhccCCChHHHHH
Q 009359 424 LASQLGVG---FFDDKLGALCMQWLKDK-----VYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVLEMINNPHYLYRMT 494 (536)
Q Consensus 424 l~~~~~~~---~~~~~l~~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~~r~~ 494 (536)
+++.+.++ .+.+.+++.+..+...+ .+.|+...+.++|++.+.+...+ ..+.++..+.+.+.+++..++..
T Consensus 506 Iag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~a 585 (1073)
T 3gjx_A 506 ISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDM 585 (1073)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHH
T ss_pred HHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 98777642 35566777777776433 34567777789998877754321 34677777888888999999999
Q ss_pred HHHHHHHHhhhhChHH
Q 009359 495 ILQAISLLAPVMGSEI 510 (536)
Q Consensus 495 ~~~~l~~l~~~~~~~~ 510 (536)
|+.++..+++.++..+
T Consensus 586 A~~af~~i~~~C~~~l 601 (1073)
T 3gjx_A 586 ACDTFIKIAQKCRRHF 601 (1073)
T ss_dssp HHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 82
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.22 E-value=1.3e-09 Score=95.76 Aligned_cols=174 Identities=11% Similarity=0.094 Sum_probs=135.6
Q ss_pred CcccchhhHHHhhhhhhccCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh------hhHHHHHHH
Q 009359 136 GEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA------HLKSEIMSI 206 (536)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~------~~~~~l~~~ 206 (536)
++++..|..+...+....+..+.+ ..+-+++.+.-.+.|+++.|-..+++.|..+...+... .-...++|.
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~ 136 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY 136 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 334556666666555554433222 12234454444456899999999999999988777552 123679999
Q ss_pred HHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH---H
Q 009359 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV---P 283 (536)
Q Consensus 207 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~---~ 283 (536)
+..-+.|..+.||..+...+..+...+++ ..+.+++.+.+.+++|++|..++..++.+.+..|.. ....+ |
T Consensus 137 LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~ 210 (266)
T 2of3_A 137 LLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEK 210 (266)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchH
Confidence 99999999999999999999888876654 457788888999999999999999999999999986 34567 9
Q ss_pred HHHHhcCCCcHHHHHHHHHhHHHHHhhcChHH
Q 009359 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 315 (536)
Q Consensus 284 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (536)
.+.++++|++..||.+|+.++..+....|...
T Consensus 211 ~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 211 TVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999988887763
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.22 E-value=4.6e-09 Score=87.56 Aligned_cols=183 Identities=13% Similarity=0.112 Sum_probs=157.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-hhh
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDC 238 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~ 238 (536)
..+..+.+++.|.|+.++..++.+++.+.+..+. ....+.++|.+.+++.++++.+-..|++++..+....+- +..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4677888999999999999999999999988644 345678999999999999999999999999999988765 445
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHH
Q 009359 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (536)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (536)
...+...+.....+++.-.+..++..++.+ ......+.+...+.++++..+.+++.+++.++-.++...+.....+
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 678888999999999999999999999987 2222345789999999999999999999999999998877666667
Q ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHhhhh
Q 009359 319 HILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (536)
Q Consensus 319 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 349 (536)
.++.-+..+++.+++.++..|+..+..+...
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8888888889999999999999999888754
No 84
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.21 E-value=1.7e-09 Score=101.24 Aligned_cols=217 Identities=12% Similarity=0.021 Sum_probs=153.5
Q ss_pred cHHHHHHHHHhHHHHHhhcC-hH-HH--HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCH---HHH-HHhHHHHHH
Q 009359 293 EAEVRIAAAGKVTKICRILN-PE-LA--IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DAT-IEQLLPIFL 364 (536)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~-~~-~~--~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~l~~~l~ 364 (536)
++.+|..|+.+|..++..-. .. .+ ....+|.|..++.+++..++..++.+|..++..-+. ..+ ....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46788888888888875322 11 22 134578888888888889999999999888753111 111 234578888
Q ss_pred Hh-hCCCCHHHHHHHHHhhHHHHhhh-c-hhHH--HhhHHHHHHHhhcCCCh----HHHHHHHHHHHHHHhh--hchhh-
Q 009359 365 SL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL--SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQ--LGVGF- 432 (536)
Q Consensus 365 ~~-l~d~~~~vr~~a~~~l~~l~~~~-~-~~~~--~~~i~~~l~~~~~~~~~----~~R~~a~~~l~~l~~~--~~~~~- 432 (536)
.+ +...++.+++.++.++..+.... + ...+ ....+|.|.+++.+++. .++..++.++..++.. .+++.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 45677888888888888886522 1 1122 35678889998876543 5888888888888752 12211
Q ss_pred ---HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh---hhhhhchhHHHHhhccCCChHHHHHHHHHHHHHhhhh
Q 009359 433 ---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 506 (536)
Q Consensus 433 ---~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~ 506 (536)
.....+|.+..++.+.+..++..|+.+|..++..... .......+|.|.+++++++..+|..+..++.+++...
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 1233688899999999999999999999999732111 1223678999999999999999999999999999875
Q ss_pred ChH
Q 009359 507 GSE 509 (536)
Q Consensus 507 ~~~ 509 (536)
+..
T Consensus 337 ~~~ 339 (354)
T 3nmw_A 337 PAK 339 (354)
T ss_dssp CGG
T ss_pred HHH
Confidence 543
No 85
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.20 E-value=5.9e-10 Score=104.77 Aligned_cols=259 Identities=13% Similarity=0.002 Sum_probs=182.7
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhchhcccCCccchhc
Q 009359 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANV 86 (536)
Q Consensus 7 ~~~~i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 86 (536)
+..-.+.|+..|-++.|++|..|+-+|.++.+..|....+. ...+.+-.+|....-+|.+|.+++++..
T Consensus 172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDqV---- 240 (800)
T 3oc3_A 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDRT---- 240 (800)
T ss_dssp GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSSC----
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCee----
Confidence 44446778899999999999999999999988887543322 2122267788888888888877666321
Q ss_pred cchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHH
Q 009359 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRT 166 (536)
Q Consensus 87 ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 166 (536)
-..||+.++++|+.+ .+++++ ...+..++ .....+.|.+|..+.-.+..+...+.. .+.+++
T Consensus 241 ------------VAPVRETaAQtLGaL-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~ 302 (800)
T 3oc3_A 241 ------------VAPVRDAAAYLLSRI-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCR 302 (800)
T ss_dssp ------------BCHHHHHHHHHHHHH-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHH
T ss_pred ------------eeehHHHHHHHHHHH-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHH
Confidence 346899999999999 888776 22222333 233566789999888777666333322 788899
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcch--HHHHHHHHhHHHhhcccCchhhhhhhHH
Q 009359 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD--SVRLLAVEGCGALGKLLEPQDCVAHILP 244 (536)
Q Consensus 167 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (536)
.+...++|++..||..|+.+|..++ .....+.++..+...+.+.++ ..-...+..|+.+...-......+.++|
T Consensus 303 aVL~GL~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVP 378 (800)
T 3oc3_A 303 KLVSLLSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLK 378 (800)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGG
T ss_pred HHHhhcCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHH
Confidence 9999999999999999999999988 223356677777776665432 2334455666666554332222347888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHH
Q 009359 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT 305 (536)
Q Consensus 245 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~ 305 (536)
.+...+.+.-..||.++.+++..+. ...-+--++.+++-+++++|+..+.+.+.
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8888999999999999999987665 11223445667777888999999988885
No 86
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.19 E-value=1.4e-09 Score=95.59 Aligned_cols=146 Identities=13% Similarity=0.171 Sum_probs=119.1
Q ss_pred hhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHH------HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH
Q 009359 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKD------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (536)
Q Consensus 320 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (536)
+++.+.-.+.|.|..|-..+++.+..+...++.. .-...++|.++.-+.|....||..+-..+..+...+++
T Consensus 88 l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-- 165 (266)
T 2of3_A 88 LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-- 165 (266)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH--
Confidence 4454444445788888888888888876655332 11367899999999999999999999999888877665
Q ss_pred HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHH---HHHHHHhcCcchHHHHHHHHHHHHHHHHhChh
Q 009359 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG---ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (536)
Q Consensus 394 ~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (536)
..+.+.+.+.++++||+.|..++..+..+.+..|.. ....+ |.+.+++.|++.+||.+|+.++..+....|..
T Consensus 166 --~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 166 --LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp --HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred --HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 457777888889999999999999999999998876 23456 88999999999999999999999999998876
Q ss_pred h
Q 009359 471 W 471 (536)
Q Consensus 471 ~ 471 (536)
.
T Consensus 242 v 242 (266)
T 2of3_A 242 M 242 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.18 E-value=1.2e-08 Score=81.18 Aligned_cols=214 Identities=16% Similarity=0.180 Sum_probs=152.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-cCcchHHHHHHHHhHHHhhcccCchhhhh
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVA 240 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (536)
+.+++.+..++.|+-|.||..|+..+..+++..+. ....++.-++.++ +++.-..-.....++|.++..-++ ...
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHH
Confidence 55778888999999999999999999998875432 2233344444443 344444555667778877764443 467
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhh
Q 009359 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 320 (536)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i 320 (536)
.++|.+.....-.++++|-.....|+.++..-+. ....+..-+..++++++..=|.+|+..++.++... ..+....
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHHGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--ccccCcc
Confidence 7888888877777899999999999999876221 12245566677888998888888888888776531 1233556
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHH
Q 009359 321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (536)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (536)
+|.+..++.|.+.-||..++++++.++..-++ ...++...+.-++|++..|...+-..++.+.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 68888889999999999999999999875322 2233344455678888888888877777765
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.18 E-value=3.6e-10 Score=104.34 Aligned_cols=292 Identities=13% Similarity=0.044 Sum_probs=164.3
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhccc
Q 009359 154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (536)
Q Consensus 154 ~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 233 (536)
..++......++....+++..++...|+..--++..+++. . +... -..+.+.+-++|+++.+|..|+.+++.+..
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 3444444566778888899999999999998888887775 2 2222 567788888999999999999999998865
Q ss_pred CchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh
Q 009359 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (536)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (536)
....+.+.+.+.+++.|+++.||..|+-+...+....+ + ..+.+++.+.+++.|.++.|..+|+..+..+.+. +.
T Consensus 134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~ 208 (355)
T 3tjz_B 134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-D-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DR 208 (355)
T ss_dssp --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-H-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CH
T ss_pred --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-H-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-ch
Confidence 34677899999999999999999999998877754321 1 2346788888999999999999999999888763 22
Q ss_pred HHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhH
Q 009359 314 ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (536)
Q Consensus 314 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (536)
. ....+++.+... .-.++......++.+..++..- .......+.+.+..++++.++.|...|++++-.+.. .+..
T Consensus 209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~- 283 (355)
T 3tjz_B 209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK- 283 (355)
T ss_dssp H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-
Confidence 1 223344433221 1123444444455444443321 012346788888889999999998888888766644 1111
Q ss_pred HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 009359 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (536)
Q Consensus 394 ~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 462 (536)
......+.+..++.+++..+|..++..+..++...... . ...-.-+.+++.|++..++.-|+.+|-+
T Consensus 284 ~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~-v-~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 284 ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA-V-TACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH-H-HHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 11233445566677777788888888888776543321 1 1122336677788888777777666543
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.17 E-value=3e-09 Score=99.60 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=148.2
Q ss_pred chHHHHHHHHhHHHhhcccCc--hhh--hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---Cc-cccchHHHHH
Q 009359 215 QDSVRLLAVEGCGALGKLLEP--QDC--VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EP-TRSDVVPAYV 286 (536)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~ 286 (536)
++.++..|+.+|..++..-.+ ..+ ...++|.+.+++.+++..++..++.+|.+++..-.. .. .....+|.++
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 467899999999998754322 122 234689999999999999999999999998742111 11 1235688888
Q ss_pred Hh-cCCCcHHHHHHHHHhHHHHHhhc-Ch-HHH--HHhhhHHHHHhccCCCH----HHHHHHHHHHHHhhhhh--CHH--
Q 009359 287 RL-LRDNEAEVRIAAAGKVTKICRIL-NP-ELA--IQHILPCVKELSSDSSQ----HVRSALATVIMGMAPIL--GKD-- 353 (536)
Q Consensus 287 ~l-l~d~~~~vr~~a~~~l~~~~~~~-~~-~~~--~~~i~~~l~~l~~d~~~----~vr~~a~~~l~~l~~~~--~~~-- 353 (536)
++ ++..+++++..|+.++..++... +. ..+ ....+|.|..++.+.+. .++..++.++..++..+ +.+
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 46677899999999999887633 11 122 24677888888775543 58888888888887521 211
Q ss_pred -HH-HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhc--h-hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhh
Q 009359 354 -AT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (536)
Q Consensus 354 -~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~-~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~ 427 (536)
.+ ....+|.+..++++.+..+++.|+.++..++..-. . .......+|.|.+++.+++..+|..++.++..++..
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 11 13468999999999999999999999998863211 1 112245677788888877788888888888777764
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.16 E-value=4.8e-10 Score=105.39 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=179.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhH
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (536)
+.+.+..-+-|+.|++|..|+-+|.++.+..+...-.. --.+.+-.+|..++-+|..+++.++++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDqV------ 240 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDRT------ 240 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSSC------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCee------
Confidence 56667777789999999999999999998765311000 1122255788888888888887666532
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHH
Q 009359 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (536)
Q Consensus 244 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~ 323 (536)
-..||..++++||.+ ..++.+ ..++..++..+..+.|+||.+++-++.-+...+.. .+.+++.
T Consensus 241 ----------VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 241 ----------VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ----------BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ----------eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 245999999999999 776665 34555555666888999999999999888443332 4778888
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCC--HHHHHHHHHhhHHHHhhhchhHHHhhHHHH
Q 009359 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (536)
Q Consensus 324 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 401 (536)
+...+.|++..||..|+.++..++. + ...+.++..+..+|.+-+ ..--...+..|+.++..-......+.++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA~---p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFPI---T-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSCC---S-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhcc---h-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 8888999999999999999988882 1 224556666666665422 222344455555555432111122478899
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 009359 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (536)
Q Consensus 402 l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (536)
+..++.++-..||.++++++..+. . .+.+--++.+.+-+++.+|+..+.+++.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL---~----~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS---E----ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC---C----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH---h----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999999997765 1 1222233556778999999999988885
No 91
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.15 E-value=5.1e-08 Score=106.84 Aligned_cols=455 Identities=10% Similarity=-0.034 Sum_probs=261.2
Q ss_pred CchHHHHHHHHHHhchhcccCCccchhccchHHHhhh-cCcchHHHHHHHHHHHHHHhh----cCh---hhHHhhHHHHH
Q 009359 59 DDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLC-TVEETCVRDKAVESLCRIGSQ----MRE---QDVVEHFIPLV 130 (536)
Q Consensus 59 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~-~~~~~~vr~~a~~~l~~~~~~----~~~---~~~~~~l~~~l 130 (536)
.++.+|+.|-..|..+.+. ++.+..+. ..+. .+.+..+|..|+..|.+.+.. +++ ..+...++..+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~---p~~~~~~~---~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l 98 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK---CPICVPCG---LRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELI 98 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH---CTTHHHHH---HHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC---chHHHHHH---HHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3667898888888887442 12222222 2233 456789999999999997753 333 23445555555
Q ss_pred HHHhc---CcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh-----------
Q 009359 131 KRLAA---GEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----------- 196 (536)
Q Consensus 131 ~~l~~---~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----------- 196 (536)
..... +....+|...+.++..+...--++.++++++.+..+++. ++..+..++..|..+.+....
T Consensus 99 ~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~ 177 (1204)
T 3a6p_A 99 ANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRD 177 (1204)
T ss_dssp HHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHH
T ss_pred HhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHH
Confidence 43321 134678888888888876653334566777777777765 566788888888888764221
Q ss_pred -----hhhHHHHHHHHHHhhcC-------------------cchHHHHHHHHhHHHhhcccCchhhhh---hhHHHHHHh
Q 009359 197 -----AHLKSEIMSIFEELTQD-------------------DQDSVRLLAVEGCGALGKLLEPQDCVA---HILPVIVNF 249 (536)
Q Consensus 197 -----~~~~~~l~~~l~~~l~d-------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~---~l~~~l~~~ 249 (536)
....+.+++.+.+.+.+ ++..++..+++++.......+.....+ .+++.+..+
T Consensus 178 l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~ 257 (1204)
T 3a6p_A 178 IQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLL 257 (1204)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHH
Confidence 01123555655555543 234567778888877666555432222 377877777
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCc----cccch----HHHHHHhc--------CCCcHHHHHHHHHhHHHHHhhcC-
Q 009359 250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRSDV----VPAYVRLL--------RDNEAEVRIAAAGKVTKICRILN- 312 (536)
Q Consensus 250 ~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l----~~~l~~ll--------~d~~~~vr~~a~~~l~~~~~~~~- 312 (536)
+.+ +.+|.+|+.+|..++..-.... ....+ +..+.... .|.+.++++..++.+..++..+.
T Consensus 258 l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~ 335 (1204)
T 3a6p_A 258 LNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCA 335 (1204)
T ss_dssp GGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 5689999999999985322100 01111 11222222 23345666666666655543211
Q ss_pred ---------hHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC---H---HHHHHhHHHHHHH---hhC---CC-
Q 009359 313 ---------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---K---DATIEQLLPIFLS---LLK---DE- 370 (536)
Q Consensus 313 ---------~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~---~~~~~~l~~~l~~---~l~---d~- 370 (536)
.......+++.+..+..+++..+-..++..+..+.+... . ..+...+++.+.. -++ +.
T Consensus 336 l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~ 415 (1204)
T 3a6p_A 336 LLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTD 415 (1204)
T ss_dssp HHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCS
T ss_pred HHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 111235677888888888888888888887776654421 1 1234555555522 111 00
Q ss_pred -------------C-------HHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhc-----------------------
Q 009359 371 -------------F-------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE----------------------- 407 (536)
Q Consensus 371 -------------~-------~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~----------------------- 407 (536)
+ .+.|......+..++...+... ...+.+.+...+.
T Consensus 416 ~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~-l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 494 (1204)
T 3a6p_A 416 SPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTS-FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCS 494 (1204)
T ss_dssp STHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHTCC-----------------CCSC
T ss_pred CcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHhhhhcccccccccccccccccccC
Confidence 0 2356666666666665443322 2444454433322
Q ss_pred --CCChHHHHHHHHHHHHHHhhhch----hhHHHHHHHHHHHHh---cCcchHHHHHHHHHHHHHHHHhChh-hhhhchh
Q 009359 408 --DRHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCMQWL---KDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIV 477 (536)
Q Consensus 408 --~~~~~~R~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~ 477 (536)
++.|....+....+..++..+.. +.....+.|.++..+ ...++.+|...+.+++.+...+... .....++
T Consensus 495 ~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL 574 (1204)
T 3a6p_A 495 VFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVF 574 (1204)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 12356666766666666654411 111112334444432 3457789999999999988776532 1123344
Q ss_pred HHHHhhccC------------CChHHHHHHHHHHHHHhhhhChHH--HHHhHHHHHHhhc
Q 009359 478 PQVLEMINN------------PHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINAS 523 (536)
Q Consensus 478 ~~l~~~~~d------------~~~~~r~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l 523 (536)
+.+...+.+ .+..+|..|..++..++..++..+ +.+.+...+..++
T Consensus 575 ~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l 634 (1204)
T 3a6p_A 575 SKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLL 634 (1204)
T ss_dssp HHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444433333 245799999999999999887654 3444444444433
No 92
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.15 E-value=6.6e-08 Score=77.04 Aligned_cols=216 Identities=16% Similarity=0.161 Sum_probs=154.3
Q ss_pred hHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 009359 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPT 277 (536)
Q Consensus 199 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~ 277 (536)
+-..++..+..++.|.-|.|++.|+..+..+++..++- .+.++..+.- +-++..-..-...+.++|.++..-+. .
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el--~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~ 104 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL--YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--L 104 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--H
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--H
Confidence 34667888889999999999999999999999866641 2222222222 24566666778889999999875221 1
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHH
Q 009359 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357 (536)
Q Consensus 278 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 357 (536)
...++|.+..-..=.++.+|.....+++.+.... +.....+..-+..++++++..-|.+++..++.++.. .-.+..
T Consensus 105 v~~vVp~lfanyrigd~kikIn~~yaLeeIaran--P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~~~yv~ 180 (253)
T 2db0_A 105 VKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYVN 180 (253)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--THHHHG
T ss_pred HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--CccccC
Confidence 2357788888777778899999999999998752 334466666677788899988999999999888653 223456
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 009359 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (536)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~ 425 (536)
.++|.+..+|.|.+.-||.++.++++.+...- +.+ ..++....+-++|.+..+....-+.++.+.
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n--pkl-Rkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLN--DKL-RKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC--HHH-HHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHHcC--HHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999887532 223 233333444556777766666666666554
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.11 E-value=1.6e-09 Score=99.96 Aligned_cols=277 Identities=13% Similarity=0.052 Sum_probs=101.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhh
Q 009359 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL 321 (536)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~ 321 (536)
+++.+.+++.+++...|+.+.-++..+++. .++. . -....+.+=+.|+++-+|..|+.+++.+.. +...+.+.
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~-i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~ 141 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV-I-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIE 141 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG-G-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH-H-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHH
Confidence 333344444444444444444444433332 1111 0 223334444444445555555555444421 22234444
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHH
Q 009359 322 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (536)
Q Consensus 322 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 401 (536)
+.+.+.+.|+++.||.+|+-+...+.... ++ ..+.+++.+..++.|.++.|...|+..+..+... +.. ....+++.
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~-a~~kLv~~ 217 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCS-FD-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRL-AVSKMISK 217 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHH-HHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccC-HH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chH-HHHHHHHH
Confidence 44555555555555555555554444321 11 1234455555555555555555555555544321 000 11222222
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHH
Q 009359 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL 481 (536)
Q Consensus 402 l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 481 (536)
+.+. .-.+.......++.+..++..- .......+.+.+...++..++.|.-.|++++..+... +.. ......+.+.
T Consensus 218 l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~L~ 293 (355)
T 3tjz_B 218 FTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSVLQ 293 (355)
T ss_dssp HHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTHH
T ss_pred HhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHHHH
Confidence 2111 0001111222233222222110 0112345667777777888888888888888776542 111 1234455666
Q ss_pred hhccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCccchhhhccC
Q 009359 482 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDSESVAVTYSH 535 (536)
Q Consensus 482 ~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~ 535 (536)
.++..++..+|..+++.+..+....+.. ....-..+.++++|++-.++.+|.
T Consensus 294 ~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 294 LFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp HHHHSSSSSSHHHHHHCC------------------------------------
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHH
Confidence 6677777888888888888887765543 445666788888888888887774
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.05 E-value=6.5e-09 Score=94.72 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=112.6
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhhCHHHH-------HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchh----
Q 009359 324 VKELSSDSSQHVRSALATVIMGMAPILGKDAT-------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---- 392 (536)
Q Consensus 324 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---- 392 (536)
+...+.+++|..|..+++.+..+......... ...+.+.+...+.|.+..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34556677777777777777665543222111 1234556667777777777777777777776654432
Q ss_pred ----HHHhhHHHHHHHh-hcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q 009359 393 ----LLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (536)
Q Consensus 393 ----~~~~~i~~~l~~~-~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (536)
.....++|.+.+- +.+....+|..++.++..++...+. ...++..+...+..+++.||..++..|..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 1224456655543 6677777777777777666654332 1234455666777778888888888888777777
Q ss_pred Chhhh-----hhchhHHHHhhccCCChHHHHHHHHHHHHHhhhhChH
Q 009359 468 GPDWA-----MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 468 ~~~~~-----~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
|.... ...+++.+..++.|+|..||..+..+++.+...+|..
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 65422 1345556666777888888888888888877777743
No 95
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.1e-08 Score=93.20 Aligned_cols=147 Identities=11% Similarity=0.084 Sum_probs=105.8
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHH--------HHHHhHHHHHHH-hhCCCCHHHHHHHHHhhHHHHhhhch
Q 009359 321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKD--------ATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGI 391 (536)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~ 391 (536)
.+.+...+.|.|..+...+++++..++..++.. .+...++|.++. ++.|....+|..+..++-.++...+.
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc
Confidence 344555556666666666666666665544321 123456666664 58899999999999888777754432
Q ss_pred hHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhh-----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 392 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 392 ~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
...+++.+...++++++.+|..++.++..+...+|... ..+.+++.+.+++.|+++.||.+|..+++.+...
T Consensus 137 ---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 137 ---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp ---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 24566777788899999999999999999988877643 2345667788899999999999999999999999
Q ss_pred hChh
Q 009359 467 FGPD 470 (536)
Q Consensus 467 ~~~~ 470 (536)
+|+.
T Consensus 214 ~G~~ 217 (278)
T 4ffb_C 214 TGNN 217 (278)
T ss_dssp ----
T ss_pred hCcc
Confidence 8864
No 96
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.03 E-value=3.4e-08 Score=89.87 Aligned_cols=172 Identities=9% Similarity=0.050 Sum_probs=131.0
Q ss_pred HHHHHHHHhHHHHHhhcChHH--HHHhhhHHHHH-hccCCCHHHHHHHHHHHHHhhhhhC---HHHHHHhHHHHHHHhhC
Q 009359 295 EVRIAAAGKVTKICRILNPEL--AIQHILPCVKE-LSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLK 368 (536)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~~--~~~~i~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~ 368 (536)
+-|..|+..|..++...+... .....+|.+.. ++.++++.+|..|+++++.++..-+ ........+|.++.+++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 567778888888877544321 22345677777 8899999999999999999986322 11223467888999998
Q ss_pred -CCCHHHHHHHHHhhHHHHhhhch--hHH-HhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHH
Q 009359 369 -DEFPDVRLNIISKLDQVNQVIGI--DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALC 441 (536)
Q Consensus 369 -d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l 441 (536)
+++..+|..|+.+++.++....+ +.+ ....+|.|..++++++..+|..+++++..++..-.. .......+|.+
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 45789999999999999864322 222 246889999999999999999999999999865221 12234578889
Q ss_pred HHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 442 MQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 442 ~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
..++.+++..||..++.+++.+...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999875
No 97
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.01 E-value=3.3e-08 Score=89.93 Aligned_cols=172 Identities=14% Similarity=0.169 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHhhhhhCH--HHHHHhHHHHHHH-hhCCCCHHHHHHHHHhhHHHHhhhc---hhHHHhhHHHHHHHhhc
Q 009359 334 HVRSALATVIMGMAPILGK--DATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAE 407 (536)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~ 407 (536)
.-|..++..|..++..... .....-.+|.++. +|+++++.+|..|+.+++.+...-. ...+....+|.|..+++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 3466666777766654321 1122345788888 9999999999999999999975321 11233467888889888
Q ss_pred -CCChHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh---hhhhhchhHHH
Q 009359 408 -DRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQV 480 (536)
Q Consensus 408 -~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l 480 (536)
+++..+|..++++|+.++....+ .+.....+|.+..++.+++..||..|+++|+.++..... ......++|.|
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 45789999999999999864332 222345788999999999999999999999999876221 12346799999
Q ss_pred HhhccCCChHHHHHHHHHHHHHhhh
Q 009359 481 LEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 481 ~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
..++.+++..+|..++.++++++..
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999876
No 98
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.99 E-value=1.4e-07 Score=78.80 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=143.5
Q ss_pred HHHHHHHhcCcccchhhHHHhhhhhhccCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh-hhhHH
Q 009359 127 IPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHLKS 201 (536)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~ 201 (536)
+..+..+.+++++.++..+..++..+....++. ..+.+++.+..++.++|..|--.|+++++.+....+. +.-..
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~ 114 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL 114 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 344455556666666666666666666665442 5677888899999999999999999999999876654 33446
Q ss_pred HHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 009359 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 281 (536)
Q Consensus 202 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 281 (536)
.+...+...+.++++-.+..+++.++.+ +.. .....+..++..++.+++.+++.++..++.+++..-+.....+.+
T Consensus 115 Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I 190 (265)
T 3b2a_A 115 KAAKTLVSLLESPDDMMRIETIDVLSKL-QPL---EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLI 190 (265)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS---CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGT
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc---cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 6788888899999999999999999988 322 235678888889999999999999999999999877766667788
Q ss_pred HHHHHHhcCCCcHHHHHHHHHhHHHHHhh
Q 009359 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (536)
Q Consensus 282 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 310 (536)
+.-+-.+++.+++.++.-|+..+..+...
T Consensus 191 ~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 191 LDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp TTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88888999999999999999999988764
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.99 E-value=2.4e-08 Score=84.44 Aligned_cols=139 Identities=21% Similarity=0.240 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 009359 200 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (536)
Q Consensus 200 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 278 (536)
.+.+++....+.+++..+||..|+..++.. . ....+++.+.. +..|++|.||..++..++.++...+.+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 467889999999999999999999988877 3 13568899987 888999999999999999999755543
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhh
Q 009359 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (536)
Q Consensus 279 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 349 (536)
..++.+...+.|++..||..|......++.........+.++|.+..+..|++..||.++..+|..+++.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 3678899999999999999999887655543222233467889999999999999999999999999875
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.96 E-value=1.2e-10 Score=92.93 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=58.3
Q ss_pred HHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 009359 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (536)
Q Consensus 203 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 282 (536)
-.+.+...++|+++.+|..|+..|+.++. . . ++.+.++++|+++.||..++.+|+.+. .+..+
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~--------~~~a~ 75 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAV 75 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcC--------CHHHH
Confidence 34455555666666666666666554432 0 1 255555556666666666666655543 12345
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHH
Q 009359 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIM 344 (536)
Q Consensus 283 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~ 344 (536)
+.+...++|+++.||..|+.+++.+.. ...++.+..+++|+++.||..++.+++
T Consensus 76 ~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 76 EPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 555555556666666666666655531 223344444445555556655555544
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.95 E-value=3.1e-08 Score=83.80 Aligned_cols=139 Identities=19% Similarity=0.181 Sum_probs=113.6
Q ss_pred HhhHHHHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHHhhhhhHH
Q 009359 123 VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATVEAAHLKS 201 (536)
Q Consensus 123 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~-ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 201 (536)
.+.++++...+.+++...+|..|+.+++.. . ....+++.+.. +..|++|.||+.++.+++.++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 345778888999999889999999988887 3 12567788887 7889999999999999999997555542
Q ss_pred HHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009359 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (536)
Q Consensus 202 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 271 (536)
.++.+.....|++..||..|++.+...+.........+.++|.+..+..|++..||.++++.|..+++.
T Consensus 140 -~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 -ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 567788899999999999999987655543223344667999999999999999999999999998864
No 102
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.91 E-value=2.5e-10 Score=90.99 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=59.4
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHH
Q 009359 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360 (536)
Q Consensus 281 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 360 (536)
..+.+..+++|+++.+|..|+.+++.+.. . . ++.+..+++|+++.||..++.+++.+.. +..+
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~ 75 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAV 75 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 44555566666666666666666554421 1 1 2444455556666666666666665542 1234
Q ss_pred HHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009359 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (536)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~ 422 (536)
+.+...++|+++.||..++.+++.+.. +..++.|.+.++|+++.+|..++.+++
T Consensus 76 ~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 76 EPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 555555566666666666666665532 234455555555555556655555543
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.46 E-value=1.6e-06 Score=91.74 Aligned_cols=187 Identities=14% Similarity=0.104 Sum_probs=123.8
Q ss_pred hHHHHHHhcCCCcH-HHHHH-HHHhHHHHHhhcChHHHHHhhhHHHHHhcc-CCCHHHHHHHHHHHHHhhh----hhCHH
Q 009359 281 VVPAYVRLLRDNEA-EVRIA-AAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAP----ILGKD 353 (536)
Q Consensus 281 l~~~l~~ll~d~~~-~vr~~-a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~~l~~l~~----~~~~~ 353 (536)
++|.+..+.++.+. ++... |...+..++...-.....+.++..+..... +++| +|.+++..+..+.- .+..+
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 66666666666654 55554 444555554433334444667777766665 6899 99999888766532 11222
Q ss_pred HHHHhHHHHHHHhhCCCC-HHHHHHHHHhhHHHHhhh-chhHHHhhHHHHHHHhhcC------------CChHHHHHHHH
Q 009359 354 ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVELAED------------RHWRVRLAIIE 419 (536)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~-~~~~~~~~i~~~l~~~~~~------------~~~~~R~~a~~ 419 (536)
....+...+..+|.|+. .+||+.|..+|..+..+. ..... +.++..+.+.+.. +.-..|.+++-
T Consensus 840 -~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~-~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVL 917 (997)
T 1vsy_5 840 -EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPL-LSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVL 917 (997)
T ss_dssp -HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHH-HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhH-HHHHHHHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 23578899999999999 999999999999998776 32322 3344444333311 11146778888
Q ss_pred HHHHHHhhhch----hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhh
Q 009359 420 YIPLLASQLGV----GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (536)
Q Consensus 420 ~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 471 (536)
.|+.+....+- ..+.+.++..+.+...|+.+ |+..+-++++.+-+...+.|
T Consensus 918 gL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~W 972 (997)
T 1vsy_5 918 GLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADTW 972 (997)
T ss_dssp HHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchhH
Confidence 88888876542 33556666667777788655 99999999999888766554
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.45 E-value=4.7e-06 Score=88.14 Aligned_cols=375 Identities=10% Similarity=0.033 Sum_probs=195.1
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHhhc-CcchHHHHHHHHhH
Q 009359 154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQ-DDQDSVRLLAVEGC 226 (536)
Q Consensus 154 ~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l 226 (536)
...++...+.+.+.+..+..|++..-...|++.++.+...... +...+.+.|.+.+.+. +-.++....=..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 3445556778888899999999888889999999988653221 3456778899998888 45554443333333
Q ss_pred HHhhcccCchhhhhhhHHHHHH----h-cCCCCHHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCCcHHHHHHH
Q 009359 227 GALGKLLEPQDCVAHILPVIVN----F-SQDKSWRVRYMVANQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAA 300 (536)
Q Consensus 227 ~~l~~~~~~~~~~~~l~~~l~~----~-~~d~~~~vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~ll~d~~~~vr~~a 300 (536)
..+.....+.. ..-++..+.. + .++.+.-....-...|..+....+-... ...++..+. +..+...||++.
T Consensus 579 ~~~~~~~DprR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 579 WWLPAVVDLRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp HHHHHHSCGGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHH
T ss_pred HHHhcCCChhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHH
Confidence 33333222211 1122222211 0 0011110111111222222222221110 122333333 455666677766
Q ss_pred HHhHHHHHhhcC----------------------------hHHHHH---hhhHHHHHhcc---C--C-----CHH--HHH
Q 009359 301 AGKVTKICRILN----------------------------PELAIQ---HILPCVKELSS---D--S-----SQH--VRS 337 (536)
Q Consensus 301 ~~~l~~~~~~~~----------------------------~~~~~~---~i~~~l~~l~~---d--~-----~~~--vr~ 337 (536)
...+..+....- ++.+.+ .++..+..... + + +.. .-.
T Consensus 656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~k 735 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTS 735 (997)
T ss_dssp HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHH
Confidence 666655544320 011111 11111211111 1 1 111 112
Q ss_pred HHHHHHHHhhhhhCH---HHHHHh-HHHHHHHhhCCCCH-HHHHH-HHHhhHHHHhhhchhHHHhhHHHHHHHhhc-CCC
Q 009359 338 ALATVIMGMAPILGK---DATIEQ-LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH 410 (536)
Q Consensus 338 ~a~~~l~~l~~~~~~---~~~~~~-l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-~~~ 410 (536)
.++..+......... ..+... ++|.++.+.++.+. ++... +..++..+....-.....+.++..+.+..+ +++
T Consensus 736 Tvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s 815 (997)
T 1vsy_5 736 TIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS 815 (997)
T ss_dssp HHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS
T ss_pred HHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 333333333221111 111222 66666665555543 44444 445555554333233334566777766666 678
Q ss_pred hHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhcc
Q 009359 411 WRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN 485 (536)
Q Consensus 411 ~~~R~~a~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 485 (536)
| .|..++..+..+.-. ++.+ ....+...+..+|.|+. .+||+.|+.+|+.+....+.....+.++..+.+.+.
T Consensus 816 W-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~ 893 (997)
T 1vsy_5 816 N-QTKLQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLD 893 (997)
T ss_dssp S-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSST
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9 999999988766531 2222 23567888999999999 999999999999998765231122344444444331
Q ss_pred C------------CChHHHHHHHHHHHHHhhhhChHH----HHHhHHHHHHhhcCCccchhhhcc
Q 009359 486 N------------PHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDSESVAVTYS 534 (536)
Q Consensus 486 d------------~~~~~r~~~~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~vr~~a 534 (536)
. .+...|-+++-+++.+....+-.. ..+.++..|-....|+.| |+..+
T Consensus 894 ~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tv 957 (997)
T 1vsy_5 894 VNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAA 957 (997)
T ss_dssp TTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHT
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHH
Confidence 1 122567788888888888776542 455566666667777655 55544
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.33 E-value=0.00019 Score=67.25 Aligned_cols=258 Identities=16% Similarity=0.149 Sum_probs=149.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCH
Q 009359 176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW 255 (536)
Q Consensus 176 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~ 255 (536)
+...++.|++.+..+.+.++. ..+..+..+..++.|++..||..|++.|..++.. .....+...|.++++..++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence 477888888888888887753 3456677777888888888888888888888875 3577788888888888777
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChH----HHHHhhhHHHHHhccCC
Q 009359 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDS 331 (536)
Q Consensus 256 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~i~~~l~~l~~d~ 331 (536)
.-+..+-++|..+.+.-. ...+-..+.++.. .++.+|..+++.|..-...++.+ .....+...+...+.|-
T Consensus 115 ~E~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 777777777777765411 1122233333333 35688888888776655544432 33344555555666554
Q ss_pred CHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhC------CCCHHHHHHHHHhhHHHHhhhch----hH----HHhh
Q 009359 332 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGI----DL----LSQS 397 (536)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~----~~----~~~~ 397 (536)
+..-=......+..+- .++.-.-.+.+++++..... -.+.+.-...+.|+......+.. .. +.+.
T Consensus 190 T~~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 190 TGEEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp CHHHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence 4322222233333221 11111223456666666522 12344434445555554444432 22 2234
Q ss_pred HHHHHHHhhcC-CChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh
Q 009359 398 LLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (536)
Q Consensus 398 i~~~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (536)
++|.+..+... .....+...+..+..++...|........++.+...|
T Consensus 269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 44433333221 1223678899999999998884333444455544443
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.19 E-value=0.00079 Score=63.21 Aligned_cols=282 Identities=11% Similarity=0.106 Sum_probs=174.5
Q ss_pred cchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc
Q 009359 214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE 293 (536)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~ 293 (536)
.+...+..|...+..+...++. ..+..+..+..+++|.+..||..+++.|..+|+. .....+..++.++|...+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccc
Confidence 3578899999999999988875 4677888999999999999999999999988854 346789999999999888
Q ss_pred HHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhC----HHHHHHhHHHHHHHhhCC
Q 009359 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDATIEQLLPIFLSLLKD 369 (536)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d 369 (536)
+.-+..+-++|..+.+.- +......++..+.. .+..+|..+++.|..-...++ .++....+...+.+.++|
T Consensus 114 ~~E~~~V~~sL~sllk~D-pk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D 188 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMD-AKGTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED 188 (507)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc
Confidence 888888888888887753 33333445444443 357899988888865443333 234556777888888877
Q ss_pred CCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhc-----C-CCh----HHHHHHHHHHHHHHhhhchhhH----HH
Q 009359 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-----D-RHW----RVRLAIIEYIPLLASQLGVGFF----DD 435 (536)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-----~-~~~----~~R~~a~~~l~~l~~~~~~~~~----~~ 435 (536)
-..+=-...+..|+.+ +.++...-.+.+++.+.+... + .+. ++...+-.++..++.......| ..
T Consensus 189 VT~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 189 VTGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp CCHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 6543223333333332 122221222455665555422 1 122 2223333344444433333333 34
Q ss_pred HHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHh----hccC---------------C--ChHHHH
Q 009359 436 KLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE----MINN---------------P--HYLYRM 493 (536)
Q Consensus 436 ~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~----~~~d---------------~--~~~~r~ 493 (536)
+++|.+..+-. ++....+...+++++.++.+.|........++.+-+ +.-. + +...-+
T Consensus 268 kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vE 347 (507)
T 3u0r_A 268 QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVE 347 (507)
T ss_dssp HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHH
T ss_pred hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHH
Confidence 45553322211 112237889999999999998832222333333332 2111 1 345567
Q ss_pred HHHHHHHHHhhhhC
Q 009359 494 TILQAISLLAPVMG 507 (536)
Q Consensus 494 ~~~~~l~~l~~~~~ 507 (536)
+.+.++.+++...+
T Consensus 348 CLLy~fH~L~~k~P 361 (507)
T 3u0r_A 348 CLLYSFHQLGRKLP 361 (507)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhhhCh
Confidence 88888888887755
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.17 E-value=0.0013 Score=64.78 Aligned_cols=301 Identities=13% Similarity=0.062 Sum_probs=178.0
Q ss_pred CcHHHHHHHhc-ChhHHHHHHHhhhHHHHHHhhChHhhhhccccccccccC--CchHHHHHHHHHHhchhcccCCc----
Q 009359 9 YPIAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGGL---- 81 (536)
Q Consensus 9 ~~i~~l~~~l~-s~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d--~~~~vr~~a~~~l~~l~~~~~~~---- 81 (536)
.-|+.|.+-+. ++-.+.|.+|+.+|..+++....+.....+-+++.-+.+ ++.++-+++.+.|..+...-+.+
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~ 100 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEE 100 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccc
Confidence 34667777666 667789999999999987655433222222222222222 35566566666665443321110
Q ss_pred -------c----ch------hccchHHHhhhcCcchHHHHHHHHHHHHHHhhcChhhH---H--hhHHHHHHHHhcCccc
Q 009359 82 -------E----YA------NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDV---V--EHFIPLVKRLAAGEWF 139 (536)
Q Consensus 82 -------~----~~------~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~---~--~~l~~~l~~l~~~~~~ 139 (536)
+ +. +.-++.|..++.+++..+|-.++++|..++..-+.... . +.-+|.+..+.+|+..
T Consensus 101 ~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE 180 (651)
T 3grl_A 101 NSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE 180 (651)
T ss_dssp -------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH
T ss_pred cccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH
Confidence 0 11 12245667777889999999999999999987654221 1 1345677778888888
Q ss_pred chhhHHHhhhhhhccCCChH----HHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHHHHhh--hhhH-HHHHHHHH
Q 009359 140 TARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMP----MVRRSAATNLGKFAATVEA--AHLK-SEIMSIFE 208 (536)
Q Consensus 140 ~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~ll~d~~~----~vr~~a~~~l~~~~~~~~~--~~~~-~~l~~~l~ 208 (536)
.+|..+..++..+......- ..+..++.+..++..+.. .|-.-|+..+.++.+.... ..+. ...+|.+.
T Consensus 181 ~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~ 260 (651)
T 3grl_A 181 VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMK 260 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence 89999999999987765441 233566777777665544 7777888888888865321 1111 12344444
Q ss_pred HhhcCcc----hH--HHH---HHHHhHHHhhcccCc---------hhhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHH
Q 009359 209 ELTQDDQ----DS--VRL---LAVEGCGALGKLLEP---------QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYEL 268 (536)
Q Consensus 209 ~~l~d~~----~~--vr~---~a~~~l~~l~~~~~~---------~~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~l 268 (536)
.+++.++ |. ... .++.++..+...-++ ......+++.+.+++... ...+|..+..+++.+
T Consensus 261 ~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 261 PWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp GGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 5554221 21 111 233344443332111 112344667777765544 678999999999887
Q ss_pred HHHh------------CCCccccchHHHHHHhcCC-CcHHHHHHHHHhHHHHHh
Q 009359 269 CEAV------------GPEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICR 309 (536)
Q Consensus 269 ~~~~------------~~~~~~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~ 309 (536)
...- +.....+.++..+..++.+ ...++|.+|+.++..+..
T Consensus 341 irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 341 IRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 6421 1111122355555555644 457899999999998876
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.07 E-value=0.015 Score=59.83 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=53.0
Q ss_pred hhccccccccccCCchHHHHHHHHHHhchhcccCCccchhcc------chHHHhhhcCcchHHHHHHHHHHHHHHhhcCh
Q 009359 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVL------LPPLETLCTVEETCVRDKAVESLCRIGSQMRE 119 (536)
Q Consensus 46 ~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l------l~~l~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 119 (536)
.+.++|.+..+.++++..|..|+.++.+++. ++.....+ .+++..++.|++..||..|..+|++++..-+.
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 4578888877888888888888888888875 22222211 23456677888888888888888888876555
Q ss_pred hhHH
Q 009359 120 QDVV 123 (536)
Q Consensus 120 ~~~~ 123 (536)
+...
T Consensus 110 d~~~ 113 (684)
T 4gmo_A 110 DFCV 113 (684)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4333
No 109
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.07 E-value=0.0019 Score=63.64 Aligned_cols=225 Identities=11% Similarity=0.033 Sum_probs=133.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh---h--HHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc-h
Q 009359 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH---L--KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-Q 236 (536)
Q Consensus 163 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~---~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~ 236 (536)
+-++.+..+++..+..+|..+++.|..++..-+... + .+.-++.+..+++|..+.+|..++-.|..+.+.-.. +
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 456788899999999999999999999997654421 1 123568899999999999999999999999875443 1
Q ss_pred hh--hhhhHHHHHHhcCCCC----HHHHHHHHHHHHHHHHHh--CCCcccc-chHHHHHHhcCCCc----HH-HHH-H--
Q 009359 237 DC--VAHILPVIVNFSQDKS----WRVRYMVANQLYELCEAV--GPEPTRS-DVVPAYVRLLRDNE----AE-VRI-A-- 299 (536)
Q Consensus 237 ~~--~~~l~~~l~~~~~d~~----~~vR~~~~~~l~~l~~~~--~~~~~~~-~l~~~l~~ll~d~~----~~-vr~-~-- 299 (536)
.. .+..++.+.+++.... ..|-.-+...+.++.+.= ....+.+ ..+|.+..+++..+ |. -|. .
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~ 281 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLH 281 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHH
Confidence 11 2235555655554432 355555666777766420 0011111 23444445554221 11 121 1
Q ss_pred -HHHhHHHHHhhcCh---------HHHHHhhhHHHHHhccCC--CHHHHHHHHHHHHHhhhhhCH--HHHH---------
Q 009359 300 -AAGKVTKICRILNP---------ELAIQHILPCVKELSSDS--SQHVRSALATVIMGMAPILGK--DATI--------- 356 (536)
Q Consensus 300 -a~~~l~~~~~~~~~---------~~~~~~i~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~--~~~~--------- 356 (536)
++..+.-++..-+. ......+++.+..+...+ ...+|..++.+++.+...... +.+.
T Consensus 282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~ 361 (651)
T 3grl_A 282 LMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPP 361 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSC
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCC
Confidence 22222222221111 112344556666655443 578899999999887654321 2222
Q ss_pred -HhHHHHHHHhhCCC-CHHHHHHHHHhhHHHHh
Q 009359 357 -EQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 357 -~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~ 387 (536)
+.++..+..++++. ...+|.+++.|+..+..
T Consensus 362 ~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 362 RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 22444555556654 46899999999988763
No 110
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.97 E-value=0.0012 Score=68.06 Aligned_cols=145 Identities=13% Similarity=0.072 Sum_probs=78.2
Q ss_pred hHHHHHHHHhcCcccchhhHHHhhhhhhccCCChH---HHHH-HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh---
Q 009359 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTE-LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--- 197 (536)
Q Consensus 125 ~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~-l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--- 197 (536)
.+.|++..+ +++++..|..|+..++.++...... .... +.+.+..++.|++..||..|+.+|++++...+.+
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 456666553 4455666777777776666421111 1122 3445667788888999999999998888654432
Q ss_pred -hhHHHHHHHHHHhhcCcc---------------------hHHHHHHHHhHHHhhcccCc---hhhhhhhHHHHHHhcC-
Q 009359 198 -HLKSEIMSIFEELTQDDQ---------------------DSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQ- 251 (536)
Q Consensus 198 -~~~~~l~~~l~~~l~d~~---------------------~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~- 251 (536)
.+...+++.+..++.... +.+-..++..+..+++.-.+ .......+|.+...+.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 222335555544432110 11222334444555443222 1111234454444432
Q ss_pred --CCCHHHHHHHHHHHHHHHH
Q 009359 252 --DKSWRVRYMVANQLYELCE 270 (536)
Q Consensus 252 --d~~~~vR~~~~~~l~~l~~ 270 (536)
.....++.+++.+|..+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHhc
Confidence 2356789999999988764
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.94 E-value=0.00044 Score=59.88 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHHHHHHh--Chhhhh--hchhHHHHhhcc------CCChHHHHHHHHHHHHHhhhh
Q 009359 449 VYSIRDAAANNVKRLAEEF--GPDWAM--QHIVPQVLEMIN------NPHYLYRMTILQAISLLAPVM 506 (536)
Q Consensus 449 ~~~Vr~~a~~~l~~l~~~~--~~~~~~--~~i~~~l~~~~~------d~~~~~r~~~~~~l~~l~~~~ 506 (536)
+..|+..|..+|..++..- +..... ..+++.|..+++ +.+...++.++.++.+++..+
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 5689999999999987531 111121 346677766544 246678899999999887543
No 112
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.94 E-value=0.00021 Score=61.94 Aligned_cols=145 Identities=8% Similarity=0.008 Sum_probs=99.6
Q ss_pred HHHHHHhcCCCCh--HHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc---h
Q 009359 165 RTIYRQLCQDDMP--MVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---Q 236 (536)
Q Consensus 165 ~~~l~~ll~d~~~--~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~ 236 (536)
+|.+.+++.++++ .++..|+.++..++...++. ......+|.+.+++.++++.++..|+.+|..++..-++ .
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667778887777 88888989998888653321 22234679999999999999999999999999763222 1
Q ss_pred hhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC-CccccchHHHHHHhcC-------C---------CcHHHHH
Q 009359 237 DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLR-------D---------NEAEVRI 298 (536)
Q Consensus 237 ~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~ll~-------d---------~~~~vr~ 298 (536)
......+|.+.+++. .+++.++..++.+|.+++..-.. ......-+|.+..++. + .+++|+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 223457888888887 57899999999999888743111 0111123455554431 1 2568888
Q ss_pred HHHHhHHHHHh
Q 009359 299 AAAGKVTKICR 309 (536)
Q Consensus 299 ~a~~~l~~~~~ 309 (536)
.|..++..++.
T Consensus 170 na~~~L~nLss 180 (233)
T 3tt9_A 170 NVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 88888877764
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.23 E-value=0.024 Score=61.22 Aligned_cols=169 Identities=8% Similarity=0.009 Sum_probs=104.6
Q ss_pred hHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCCC--c----cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc
Q 009359 242 ILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE--P----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (536)
Q Consensus 242 l~~~l~~~~~d----~~~~vR~~~~~~l~~l~~~~~~~--~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~ 311 (536)
.+..+..++.+ .++.+|..+.-+++.+....... . ....+...+.+.+...+.+-+..++++|+.+..
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 44444445544 46789999999999998754322 1 122344455555566677788899999999865
Q ss_pred ChHHHHHhhhHHHHHhc-------cCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhh--CCCCHHHHHHHHHhh
Q 009359 312 NPELAIQHILPCVKELS-------SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKL 382 (536)
Q Consensus 312 ~~~~~~~~i~~~l~~l~-------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l 382 (536)
+..++.+..++ .+...++|.+|+.++..++... ...+.++++..+ .+.++++|.+|+..+
T Consensus 470 ------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 470 ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp ------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 22333343333 2335689999999999887532 223455666666 456789999998766
Q ss_pred HHHHhhhchhHHHhhHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhhch
Q 009359 383 DQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV 430 (536)
Q Consensus 383 ~~l~~~~~~~~~~~~i~~~l~~~~-~~~~~~~R~~a~~~l~~l~~~~~~ 430 (536)
-.-. .. ...+..+...+ .+++.+++......|..+++.-.+
T Consensus 539 m~t~---P~----~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 539 FESK---PS----VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHTC---CC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHC---cC----HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 3321 11 12333333333 457788888777777777765444
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.22 E-value=0.093 Score=45.87 Aligned_cols=108 Identities=15% Similarity=0.238 Sum_probs=56.7
Q ss_pred HHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhh-------
Q 009359 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI------- 389 (536)
Q Consensus 317 ~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~------- 389 (536)
.+.+++.+..+..|++..+|+..+..+...+.. +.......++.+..+++|+++.|.+.++.+...+.+..
T Consensus 51 l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~ 128 (257)
T 3gs3_A 51 AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSL 128 (257)
T ss_dssp HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444455555555555555444422 11233444555555555555555555555544443321
Q ss_pred ch-----hH---HHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHh
Q 009359 390 GI-----DL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (536)
Q Consensus 390 ~~-----~~---~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~ 426 (536)
+. +. ....+...+..+..+.+..+|..+++.+..+.-
T Consensus 129 ~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 129 MEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 00 00 013445566666777888999999999888764
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.10 E-value=0.011 Score=63.79 Aligned_cols=159 Identities=11% Similarity=0.034 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHhhhhhC------HHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHH
Q 009359 331 SSQHVRSALATVIMGMAPILG------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404 (536)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 404 (536)
.++.+|..++-+++.++...- .....+.+...+.+.+...+.+-+..++++||+++. ...++.+.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~ 478 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR 478 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHH
Confidence 456777777777777654321 112234455556666667777778888999988875 234555555
Q ss_pred hhc-------CCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHhChhhhhhc
Q 009359 405 LAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWAMQH 475 (536)
Q Consensus 405 ~~~-------~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 475 (536)
++. +...++|.+|+.++..++.. ....+.+++++.+ .+..++||.+|+..|-... + ...
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-----~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P----~~~ 546 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKR-----DPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESK---P----SVA 546 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-----CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---C----CHH
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhhh-----chHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC---c----CHH
Confidence 543 22457899999999887642 1233555566666 4567889999998874321 1 123
Q ss_pred hhHHHHhh-ccCCChHHHHHHHHHHHHHhhhhChH
Q 009359 476 IVPQVLEM-INNPHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 476 i~~~l~~~-~~d~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
.+..+... ..+++..|+..+...+..++..-.+.
T Consensus 547 ~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 547 LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 45555444 55689999999999999999876653
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.84 E-value=0.3 Score=45.34 Aligned_cols=254 Identities=12% Similarity=0.122 Sum_probs=124.4
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHH
Q 009359 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (536)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (536)
.+.++..+.+.-...+ ..|........++.-. ......+.+++.++.+..|++.+||...+..+...+.. ...+..
T Consensus 24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~-~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~ 99 (386)
T 3o2t_A 24 SERVVDLLNQAALITN-DSKITVLKQVQELIIN-KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLL 99 (386)
T ss_dssp HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHT-TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3445555555444333 3444444444444322 12223456666666666666667777766666666542 222335
Q ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCC-HHHHHHHHHhhHHHHhhhchhHHHhh
Q 009359 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQS 397 (536)
Q Consensus 319 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (536)
.+++.+..+++|+++.|-+.++.+...+.+. ++..+.. +++ ...-+ .++..+ ..
T Consensus 100 ~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl---------~f~~i~~---~~~~~~~~e---~~W~~m----------~~ 154 (386)
T 3o2t_A 100 KLIANLNMLLRDENVNVVKKAILTMTQLYKV---------ALQWMVK---SRVISELQE---ACWDMV----------SA 154 (386)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---------HHHHHHH---C-CCCHHHH---HHHHHH----------HH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---------HHHHHhc---CCCcchhHH---HHHHHH----------HH
Confidence 5666666666666666666666655554321 1111111 110 00000 011111 23
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhch-----------------------------hh---HHHHHHHHHHHHh
Q 009359 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-----------------------------GF---FDDKLGALCMQWL 445 (536)
Q Consensus 398 i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-----------------------------~~---~~~~l~~~l~~~l 445 (536)
+...+..+..+.+..+|..+++++..+.-...+ .. -...++..++..+
T Consensus 155 lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l 234 (386)
T 3o2t_A 155 MAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFM 234 (386)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 444455556667778888888887776532210 00 1234666777777
Q ss_pred cCc--chHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccC-C-------ChHHHHHHHHHHHHHhhhhChHHHHHhH
Q 009359 446 KDK--VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-P-------HYLYRMTILQAISLLAPVMGSEITCSQL 515 (536)
Q Consensus 446 ~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~-------~~~~r~~~~~~l~~l~~~~~~~~~~~~~ 515 (536)
.++ ++..-.+++.+|+.+++.=. .....+++.+..+..+ + -..++.+.--.+-++.+.-+...+..++
T Consensus 235 ~~~~iss~~l~a~lnsLa~Iak~RP--~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I 312 (386)
T 3o2t_A 235 VHPAISSINLTTALGSLANIARQRP--MFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQI 312 (386)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHH
Confidence 653 23344567778888777522 1345677766654221 1 1123344444444444433333355555
Q ss_pred HHHHHhhc
Q 009359 516 LPVVINAS 523 (536)
Q Consensus 516 ~~~l~~~l 523 (536)
-..|..+-
T Consensus 313 ~~~L~~Lg 320 (386)
T 3o2t_A 313 TTLLVDLG 320 (386)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 55555543
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.79 E-value=0.24 Score=43.31 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhh
Q 009359 157 PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (536)
Q Consensus 157 ~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 230 (536)
++...+++++.+..+..|++.+||+..+..+...+.. ...+....++.+..+++|+++.|.+.++.+...+-
T Consensus 47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4457788888888888899999999999999888743 35667888899999999999999999998887653
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.12 E-value=0.86 Score=42.30 Aligned_cols=69 Identities=26% Similarity=0.315 Sum_probs=42.8
Q ss_pred hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHH
Q 009359 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 308 (536)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~ 308 (536)
..+.+++.+..+..|++..||+.++..+.+.+.. .......+++.+..++.|.++.|.+.++.+...+.
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4556666666666676777777777777666642 11223455666666667777777666666665553
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.00 E-value=0.19 Score=41.50 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCc------chHHHHHHHHhHHHhhcc--cCc
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD------QDSVRLLAVEGCGALGKL--LEP 235 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~------~~~vr~~a~~~l~~l~~~--~~~ 235 (536)
.+..+.+.+.+ ..|..|++.|.. +.-.+.++|.+.+++.+. +...-...++....+... +.-
T Consensus 12 yf~~It~a~~~---~~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~l 81 (196)
T 4atg_A 12 YFDKILSMIKS---DMKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFI 81 (196)
T ss_dssp HHHHHHHHHTS---TTHHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHh---HHHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCCh
Confidence 34444444444 347776666554 222344556555554332 233333334444444432 223
Q ss_pred hhhhhhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCC--cHHHHHHHHHhHHHHH
Q 009359 236 QDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKIC 308 (536)
Q Consensus 236 ~~~~~~l~~~l~~~~~d---~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~--~~~vr~~a~~~l~~~~ 308 (536)
+.+...++|.+..++=. ....+|..++..++.++..++... ..+.+...+.+.+.|+ ......+|+.++..+
T Consensus 82 epYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l- 160 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL- 160 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh-
Confidence 56777788877765422 122799999999999999988642 3446777777777664 456677788777777
Q ss_pred hhcChHHHHHhhhHHHHHhc
Q 009359 309 RILNPELAIQHILPCVKELS 328 (536)
Q Consensus 309 ~~~~~~~~~~~i~~~l~~l~ 328 (536)
|++.+...++|.+....
T Consensus 161 ---G~~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 161 ---SKNVVNTVIREHAEEYK 177 (196)
T ss_dssp ---CHHHHHTHHHHHHHHHH
T ss_pred ---HHHHHHHhhhcCHHHHH
Confidence 55555555667665544
No 120
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.52 E-value=0.14 Score=40.02 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=72.1
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHH
Q 009359 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVL 481 (536)
Q Consensus 406 ~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~ 481 (536)
+.+++|..-...+..+.. ++ .-....+..+.+.+..+++.+...|+..+..+.+++|..+.. ..++..+.
T Consensus 18 l~~~dw~~ileicD~I~~-----~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~ 91 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQ-----SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS 91 (140)
T ss_dssp SSSCCHHHHHHHHHHHTT-----ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHC-----CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 345677755555554421 11 123445667888889999999999999999999999987542 56777777
Q ss_pred hhccCCChHHHHHHHHHHHHHhhhhChH
Q 009359 482 EMINNPHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 482 ~~~~d~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
.++...+..|+..++..+..++..++.+
T Consensus 92 ~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 92 NVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7776678899999999999998877654
No 121
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.42 E-value=0.47 Score=39.25 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=84.7
Q ss_pred HHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcC------CChHHHHHHHHHHHHHHhh--hchhhHHHHHHHHHHHHh
Q 009359 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQWL 445 (536)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~------~~~~~R~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l 445 (536)
.|..|+..+.. .-| .+.++|.+..+..+ .++..-...+.....+... +.-+.+...++|.++.++
T Consensus 24 ~r~~aL~sL~~---D~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCl 96 (196)
T 4atg_A 24 MKDIAIECLEK---ESG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCV 96 (196)
T ss_dssp THHHHHHHHHH---CSS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 46666555443 222 24555655554432 2444334445555555432 223345667888877765
Q ss_pred cCc---chHHHHHHHHHHHHHHHHhChh--hhhhchhHHHHhhccCC--ChHHHHHHHHHHHHHhhhhChHHHHHhHHHH
Q 009359 446 KDK---VYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLPV 518 (536)
Q Consensus 446 ~d~---~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~ 518 (536)
-.+ ...+|..|+..++.++..+|.. ....++...+.+.+.|+ .....-.|+.++..++ ++.+..-++|.
T Consensus 97 l~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG----~~~vr~~llP~ 172 (196)
T 4atg_A 97 IGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS----KNVVNTVIREH 172 (196)
T ss_dssp HCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----HHHHHTHHHHH
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH----HHHHHHhhhcC
Confidence 211 1179999999999999999863 34567777777777776 4556667777766554 45555666677
Q ss_pred HHhhcCC
Q 009359 519 VINASKD 525 (536)
Q Consensus 519 l~~~l~d 525 (536)
+..+.++
T Consensus 173 l~~~~~~ 179 (196)
T 4atg_A 173 AEEYKRT 179 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 122
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.38 E-value=0.24 Score=39.06 Aligned_cols=97 Identities=8% Similarity=0.017 Sum_probs=70.9
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHh
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLE 482 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (536)
.+++|..-...+..+.. ++ .-....+..+.+.+.++++.|...|+..+..+.+++|..|.. ..++..|..
T Consensus 25 ~~~dw~~ileicD~I~~-----~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~k 98 (149)
T 3g2s_A 25 KELDWASINGFCEQLNE-----DF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIK 98 (149)
T ss_dssp SSCCHHHHHHHHHHGGG-----SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHC-----CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 34677655555554422 11 123445667888888999999999999999999999987533 567888887
Q ss_pred hccC------CChHHHHHHHHHHHHHhhhhChH
Q 009359 483 MINN------PHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 483 ~~~d------~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
++.+ ++..||..++..+..++..++.+
T Consensus 99 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 99 VVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7754 47889999999999998887654
No 123
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=94.85 E-value=0.96 Score=35.64 Aligned_cols=98 Identities=5% Similarity=0.002 Sum_probs=72.4
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHH
Q 009359 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVL 481 (536)
Q Consensus 406 ~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~ 481 (536)
+.+++|..-...+..+..= + .-....+..+.+.+.++++.|...|+..+..+.+++|..+.. ..++..|.
T Consensus 14 l~~~dw~~~leicD~I~~~-----~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNTD-----P-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp CSSCCHHHHHHHHHHHHHS-----S-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 3356787655555554331 1 123345666788889999999999999999999999987533 67888888
Q ss_pred hhccC------CChHHHHHHHHHHHHHhhhhChH
Q 009359 482 EMINN------PHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 482 ~~~~d------~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
.++.+ .+..||..++..+..++..++..
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 121 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED 121 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 87764 37799999999999999887653
No 124
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=94.79 E-value=0.33 Score=41.54 Aligned_cols=130 Identities=8% Similarity=-0.031 Sum_probs=88.1
Q ss_pred HHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 009359 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSI 206 (536)
Q Consensus 128 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 206 (536)
.++..+.+++....|..+..++........++ -++.+...+. -++|.+-...+.+++.+....+ ..+.+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~----~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~~ 128 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLE----EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPTI 128 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH----HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHH----HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHHH
Confidence 45566667677778888888877665444332 2334444443 5678888776666777765422 235566
Q ss_pred HHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009359 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (536)
Q Consensus 207 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~ 270 (536)
+.....|++.-+|..|+..+-.. ..+...+.+++.+..+..|++.-||.+++..|..++.
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~----~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLML----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTC----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 77888999888888887765222 2233456678888888999999999999999888764
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.32 E-value=0.54 Score=37.81 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=71.1
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHh
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLE 482 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (536)
.+++|..-...+..+.. ++ .-....+..+.+.+..+++.|...|+..+..+.+++|..+.. ..++..+..
T Consensus 29 ~~~Dw~~~leicD~I~~-----~~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~ 102 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGS-----TP-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA 102 (163)
T ss_dssp SSCCHHHHHHHHHHHHH-----SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 35678765555555433 11 123345566778888999999999999999999999987542 567777777
Q ss_pred hccC-CChHHHHHHHHHHHHHhhhhChH
Q 009359 483 MINN-PHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 483 ~~~d-~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
++.. .+..||..++..+..++..++.+
T Consensus 103 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 103 VIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 6654 57899999999999999887754
No 126
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=94.32 E-value=0.55 Score=40.54 Aligned_cols=159 Identities=10% Similarity=-0.055 Sum_probs=92.9
Q ss_pred HHHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHH-HHHHHHHHHHHhhhhhHHHHHHH
Q 009359 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSA-ATNLGKFAATVEAAHLKSEIMSI 206 (536)
Q Consensus 128 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a-~~~l~~~~~~~~~~~~~~~l~~~ 206 (536)
.++..+.+++....|..|+.++........++....+-. +.. ..++|.+-... ...++.+....+ ....+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~-~l~--~~~nWd~~D~~a~~~~g~~~~~~p-----~~~~~~ 135 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEE-LIV--TKSWWDSVDSIVPTFLGDIFLKHP-----ELISAY 135 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHH-HHT--SSCCHHHHHHHTTTHHHHHHHHCG-----GGGGGT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHc--cCCChHHHHHhhHHHHHHHHHHCH-----HHHHHH
Confidence 345555666655567777766655444444433332222 222 35678876655 356677665432 123456
Q ss_pred HHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q 009359 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV 286 (536)
Q Consensus 207 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 286 (536)
+.....|++.-+|..|+..+-.. . .+.....+++.+..+..|++..||.+++.+|..++.. ..+.+.+.+.
T Consensus 136 l~~W~~s~~~w~rR~ai~~~l~~---~-~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~ 206 (232)
T 3jxy_A 136 IPKWIASDNIWLQRAAILFQLKY---K-QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHSSCHHHHHHHHHTTTTC---G-GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHH---H-hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHH
Confidence 66788888888888887765221 1 1222446777788889999999999999999887643 1234555555
Q ss_pred HhcCCCcHHHHHHHHHhHH
Q 009359 287 RLLRDNEAEVRIAAAGKVT 305 (536)
Q Consensus 287 ~ll~d~~~~vr~~a~~~l~ 305 (536)
+. .-++..+..|++.+.
T Consensus 207 ~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 207 NN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HS--CCCHHHHHHHTTTTH
T ss_pred HC--CCCHHHHHHHHHhcc
Confidence 54 333444444554443
No 127
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=93.73 E-value=1.2 Score=36.04 Aligned_cols=108 Identities=6% Similarity=0.031 Sum_probs=75.3
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHh
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLE 482 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (536)
.+++|..-...+..+..= + .-....+..+.+.+.+.++.|...|+..+..+.+++|..+.. ..++..|..
T Consensus 27 ~~~Dw~~ileicD~I~~~-----~-~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k 100 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKE-----L-EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK 100 (171)
T ss_dssp SSCCHHHHHHHHHHHHHS-----T-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 356787655555554331 1 113345566788888999999999999999999999876543 567777877
Q ss_pred hccC------CChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHH
Q 009359 483 MINN------PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI 520 (536)
Q Consensus 483 ~~~d------~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 520 (536)
++.. .+..||..+++.+..++..++...........|.
T Consensus 101 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 101 VVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7652 3679999999999999988875433333344333
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.45 E-value=1.7 Score=33.89 Aligned_cols=75 Identities=11% Similarity=-0.013 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
..+....+..-++..++.+...|+..|..+.+.+|.... ...++.-+..+++..++.||...++.+...+..++.
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 345556666667788888988899888888888775322 233444455555555667777777777777665543
No 129
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.20 E-value=3.5 Score=35.05 Aligned_cols=131 Identities=5% Similarity=-0.028 Sum_probs=89.3
Q ss_pred HHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 009359 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 283 (536)
Q Consensus 205 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 283 (536)
..+..+..++..+.|..|...++.......+ .-++.+...+. -.+|.+-...+.+++.+... ....+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence 4455566667778888888888766543332 23344444443 46899888877667776643 1234678
Q ss_pred HHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhh
Q 009359 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (536)
Q Consensus 284 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 349 (536)
.+.....+++.-+|..|+.++-.... +...+.+++.+..+..|++..||.++...|..++..
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 88899999998888888775532221 222355667777788999999999999999988765
No 130
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=93.01 E-value=2.9 Score=35.98 Aligned_cols=158 Identities=11% Similarity=0.055 Sum_probs=94.4
Q ss_pred HHHHHhhcCcchHHHHHHHHhHHHhhcccCchhhhhhhHHHHHHhc-CCCCHHHHHHHH-HHHHHHHHHhCCCccccchH
Q 009359 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVA-NQLYELCEAVGPEPTRSDVV 282 (536)
Q Consensus 205 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~~~-~~l~~l~~~~~~~~~~~~l~ 282 (536)
..+..+..++..+.|..|+..+......+.++ .++.+...+ ...+|.+-...+ ..++.+.... ...+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHH
Confidence 34555666777788888888887554433332 222333332 346888876664 5666665541 22356
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHHHHHhhhHHHHHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHH
Q 009359 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 362 (536)
Q Consensus 283 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 362 (536)
+.+.....|++.-+|..|+..+-.... ... ...+++.+.....|++..|+.++..+|..++.... +.+.+.
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~---~~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p-----~~v~~f 204 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQ---KMD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP-----DVVWEY 204 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGG---GCC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH-----HHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHh---CCC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH-----HHHHHH
Confidence 778888888888888888766422211 111 23455666777889999999999999998887522 233343
Q ss_pred HHHhhCCCCHHHHHHHHHhhH
Q 009359 363 FLSLLKDEFPDVRLNIISKLD 383 (536)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~ 383 (536)
+... .-....+..|++.++
T Consensus 205 l~~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 205 VQNN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HHHS--CCCHHHHHHHTTTTH
T ss_pred HHHC--CCCHHHHHHHHHhcc
Confidence 4332 233444455555544
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=92.92 E-value=2.8 Score=33.01 Aligned_cols=75 Identities=11% Similarity=-0.050 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcC------cchHHHHHHHHhHHHhh
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD------DQDSVRLLAVEGCGALG 230 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~ 230 (536)
-.+....+.+-+++.++.+...|+..|..+.+.+|... ....++.-+.+++.+ .+..||...++.+...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 34455666777788999999999999999998887632 234566667777754 45689999998888888
Q ss_pred cccCc
Q 009359 231 KLLEP 235 (536)
Q Consensus 231 ~~~~~ 235 (536)
..++.
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 76654
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.51 E-value=3 Score=32.79 Aligned_cols=75 Identities=11% Similarity=-0.065 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcC------cchHHHHHHHHhHHHhh
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD------DQDSVRLLAVEGCGALG 230 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~ 230 (536)
..+....+.+-+++.++.+...|+..|..+.+.+|... ....++.-+..++.+ .+..||..+++.+...+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 34455566666788999999999999999999887632 235567777777764 36789999988888887
Q ss_pred cccCc
Q 009359 231 KLLEP 235 (536)
Q Consensus 231 ~~~~~ 235 (536)
..++.
T Consensus 116 ~~f~~ 120 (148)
T 1mhq_A 116 VWFPE 120 (148)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 75543
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.43 E-value=1.9 Score=34.59 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccCc
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
.+....+.+-++..++.++..|+..|..+.+.+|.... ...+++.+..++.. .++.||..+++.+...+..++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34455566666778889999999999988888775221 23344444455543 4567888888777777665543
No 134
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=91.30 E-value=4.3 Score=32.79 Aligned_cols=75 Identities=11% Similarity=-0.053 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhcC------cchHHHHHHHHhHHHhh
Q 009359 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD------DQDSVRLLAVEGCGALG 230 (536)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~ 230 (536)
..+....+.+-+++.++.|+..|+..|..+.+.+|.. .....++.-+..++.. .+..||..+++.+...+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3445566777778899999999999999999988763 2234566666666652 35789999999998888
Q ss_pred cccCc
Q 009359 231 KLLEP 235 (536)
Q Consensus 231 ~~~~~ 235 (536)
..++.
T Consensus 128 ~~f~~ 132 (171)
T 1juq_A 128 MALPE 132 (171)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 76543
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=91.28 E-value=1.6 Score=37.35 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=68.7
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHh
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLE 482 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (536)
.+++|..-...+..+.. ...| ....+..+.+.+..+++.|...|+..|..+.++.|..+.. ..++..|..
T Consensus 22 ~~~dw~~ileicD~I~~--~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~ 95 (226)
T 3zyq_A 22 LETDWESILQICDLIRQ--GDTQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD 95 (226)
T ss_dssp SSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhC--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence 35577765555555431 1112 3445667888888999999999999999999999986433 556666666
Q ss_pred hcc-CCChHHHHHHHHHHHHHhhhhChH
Q 009359 483 MIN-NPHYLYRMTILQAISLLAPVMGSE 509 (536)
Q Consensus 483 ~~~-d~~~~~r~~~~~~l~~l~~~~~~~ 509 (536)
++. .++..||..+++.+..++..+..+
T Consensus 96 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 96 LLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 544 357889999999999998877543
No 136
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.99 E-value=8.6 Score=34.64 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=77.0
Q ss_pred HHHHhhCCCCHHHHHHHHHhhHHHHhhh---chhHH---HhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhH--
Q 009359 362 IFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-- 433 (536)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~-- 433 (536)
-+...++.++.+|-..|+.++..+.... ..+.+ -+.+...+.+++.++++-+|..++..++.+.---....+
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~ 247 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 247 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence 3556778888888888888777765321 11111 246777788899999999999999999998753222211
Q ss_pred ----HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 434 ----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 434 ----~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
...-+.+++.+|.|++..|+-.|...+.-+..+
T Consensus 248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 244677899999999999999999999887754
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=90.23 E-value=4.2 Score=34.72 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcC-cchHHHHHHHHhHHHhhcccCc
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
.+.+..+.+-++..++.+...|+..|..+.+..|... ....++..+..+++. .+..||..+++.+...+..+..
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4555666677778999999999999999998877632 223444545555433 3567888888888877765543
No 138
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=89.91 E-value=4.9 Score=31.95 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHhChhhhh----hchhHH-HH
Q 009359 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQ-VL 481 (536)
Q Consensus 408 ~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~-l~ 481 (536)
+++|..-...+..+.. ++ .-....+..+.+.++ .+++.|...|+..+..+.+++|..+.. ..++.. |.
T Consensus 31 ~~Dw~~~leicD~I~~-----~~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lv 104 (157)
T 1elk_A 31 SEDWALNMEICDIINE-----TE-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLV 104 (157)
T ss_dssp SCCHHHHHHHHHHHHH-----SS-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTH
T ss_pred CcCHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHH
Confidence 5678766655554432 11 123345556777786 588999999999999999999987543 456666 55
Q ss_pred hhcc---CCChHHHHHHHHHHHHHhhhhCh
Q 009359 482 EMIN---NPHYLYRMTILQAISLLAPVMGS 508 (536)
Q Consensus 482 ~~~~---d~~~~~r~~~~~~l~~l~~~~~~ 508 (536)
.++. ++...||..+++.+..++..++.
T Consensus 105 k~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 105 RTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 6553 34568999999999999887764
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=87.76 E-value=2.8 Score=35.68 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=67.4
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh----hchhHHHHh
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVLE 482 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (536)
.+++|..-...+..+.. ...| ....+..+.+.+..+++.|...|+..|..+.++.|..+.. ..++..|..
T Consensus 19 ~~~dw~~~leicd~i~~--~~~~----~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~ 92 (220)
T 1dvp_A 19 LEPDWPSILLICDEINQ--KDVT----PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSS 92 (220)
T ss_dssp SSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhhcC--CCcC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHH
Confidence 35677765554444431 1112 3345556778888899999999999999999998876532 457777766
Q ss_pred hcc-CCChHHHHHHHHHHHHHhhhhCh
Q 009359 483 MIN-NPHYLYRMTILQAISLLAPVMGS 508 (536)
Q Consensus 483 ~~~-d~~~~~r~~~~~~l~~l~~~~~~ 508 (536)
++. .++..||..+++.+...+..++.
T Consensus 93 l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 93 FLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 654 45788999999999998877764
No 140
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=86.59 E-value=8.7 Score=30.49 Aligned_cols=73 Identities=5% Similarity=-0.081 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHhhhhh----HHHHHHH-HHHhhc---CcchHHHHHHHHhHHHhhcc
Q 009359 162 TELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSI-FEELTQ---DDQDSVRLLAVEGCGALGKL 232 (536)
Q Consensus 162 ~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~-l~~~l~---d~~~~vr~~a~~~l~~l~~~ 232 (536)
.+....+.+-++ ..++.++..|+..|..+.+.+|.... ...++.- +..++. ++...||..+++.+...+..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 344455566565 57889999999999999888776322 2344454 455553 23457888888887777765
Q ss_pred cC
Q 009359 233 LE 234 (536)
Q Consensus 233 ~~ 234 (536)
+.
T Consensus 132 f~ 133 (157)
T 1elk_A 132 FR 133 (157)
T ss_dssp HT
T ss_pred cC
Confidence 43
No 141
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=85.18 E-value=14 Score=31.35 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhc-CcchHHHHHHHHhHHHhhcccC
Q 009359 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 162 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 234 (536)
.+....+..-++..++.++..|+..|..+.+..|... ....++..+..+++ ..+..||..+++.+...+..+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 3445556666778999999999999999998877522 22334455555544 3456788888888777776544
No 142
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=84.66 E-value=7.3 Score=30.09 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=61.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh-----hch
Q 009359 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-----QHI 476 (536)
Q Consensus 402 l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~i 476 (536)
+.+..++.+|..=...+.=|..+..... ..+...+++.+.+.+.++.+.|+..|+..|..++.+-.+.+.. ..+
T Consensus 16 V~~ATs~d~~~~pgylm~EIA~~T~~s~-~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~ 94 (140)
T 1vdy_A 16 IDAVTSDEDKVAPVYKLEEICDLLRSSH-VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVA 94 (140)
T ss_dssp HHHTTCSCSSCCCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHH
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHH
Confidence 3444555555543333333333322211 1234678999999999999999999999999998775544332 122
Q ss_pred hHHHHhhcc--CC------ChHHHHHHHHHHHHHhh
Q 009359 477 VPQVLEMIN--NP------HYLYRMTILQAISLLAP 504 (536)
Q Consensus 477 ~~~l~~~~~--d~------~~~~r~~~~~~l~~l~~ 504 (536)
+..+.++-- || ...||..|-+++..+..
T Consensus 95 Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 95 VRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 333333211 21 35799998888877653
No 143
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=84.61 E-value=23 Score=31.99 Aligned_cols=186 Identities=9% Similarity=0.004 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCch-----hh---hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009359 200 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-----DC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (536)
Q Consensus 200 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-----~~---~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 271 (536)
...++..+...+..-+.+.|..+...+..+...-... .+ .+.++..+....++++... .+...|-..++.
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl--~~G~mLRecir~ 153 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRH 153 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTS
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh--HHHHHHHHHHHh
Confidence 3556677777777778888888888887776542211 01 2446666666666554211 111111111100
Q ss_pred --hCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcCh---H---HHHHhhhHHHHHhccCCCHHHHHHHHHHH
Q 009359 272 --VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPCVKELSSDSSQHVRSALATVI 343 (536)
Q Consensus 272 --~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l 343 (536)
+..-......+-.+......++-+|-.-|..++..+...... + .-.+.++..+..++.++|+-+|+.+++.+
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 000000112233555788888999988888888877654221 1 01245667778899999999999999999
Q ss_pred HHhhhhhC-HHHH-----HHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHh
Q 009359 344 MGMAPILG-KDAT-----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 344 ~~l~~~~~-~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (536)
|.+.-.-. .... .+.-+..+..+|+|....++..|+..+.-+..
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 99854321 1111 14557888999999999999999998887764
No 144
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=84.20 E-value=29 Score=32.92 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=99.2
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChH------hhhhccccccccccCCchHHHHHHHHHHhchhcccC---Cc
Q 009359 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEE------RTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVG---GL 81 (536)
Q Consensus 11 i~~l~~~l~s~~~~~R~~a~~~l~~~~~~~~~~------~~~~~l~~~l~~~~d~~~~vr~~a~~~l~~l~~~~~---~~ 81 (536)
|..|++.+.|+|+..|..--..|..+=..+... ...+.+..|+-+...-+ .+ ..+.+.+|.++.... ..
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~n-GI-aeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHN-GI-AELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCS-CH-HHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CH-HHHHHHHHHHHhccCCCCcH
Confidence 668999999999999998776665443222111 11233344443311111 11 123344445444322 12
Q ss_pred cc----hhccchHHHhhhcCcchHH-HHHHHHHHHHHHhhcChhhHHhhHHHHHHHHhcC---cccchhhHHHhhhhhhc
Q 009359 82 EY----ANVLLPPLETLCTVEETCV-RDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAG---EWFTARVSSCGLFHVAY 153 (536)
Q Consensus 82 ~~----~~~ll~~l~~l~~~~~~~v-r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~---~~~~~r~~a~~~l~~~~ 153 (536)
++ ...++|+.. .+.-.. -..-..++..++..-+ .. ..+.+..+.+- .+..-...-..-+..+.
T Consensus 242 ehk~fl~~vLlPLhk----~~~l~~y~~qL~ycv~qf~eKDp--~L---~~~vi~~LLk~WP~tns~KevlFL~eleeil 312 (449)
T 2npp_B 242 EHKIFLLKVLLPLHK----VKSLSVYHPQLAYCVVQFLEKDS--TL---TEPVVMALLKYWPKTHSPKEVMFLNELEEIL 312 (449)
T ss_dssp HHHHHHHHTTGGGGG----SSCGGGTHHHHHHHHHHHHHHCG--GG---HHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc----cchhHHhHHHHHHHHHHHHhcCc--Hh---HHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 22 233444432 111111 1122233333333211 11 12233333321 11111223344555666
Q ss_pred cCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHhhcC-----cchHHHHHH
Q 009359 154 PSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGK--FAATVEAAHLKSEIMSIFEELTQD-----DQDSVRLLA 222 (536)
Q Consensus 154 ~~~~~~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a 222 (536)
+..++. ....++..+-.++++++..|-+.|+..+.+ +...+ ......++|.+...+.. =+..||..+
T Consensus 313 e~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li--~~n~~~IlPii~p~L~~~s~~HWn~~V~~la 390 (449)
T 2npp_B 313 DVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI--SDNAAKILPIMFPSLYRNSKTHWNKTIHGLI 390 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH--HTTHHHHHHHHHHHHTSCTTCCSSTTHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH--HhchhhhHHhhHHHHHHHHHHhcCHHHHHHH
Confidence 666664 345566777788888998998888877654 22222 12234455655544321 145677777
Q ss_pred HHhHHHhhc
Q 009359 223 VEGCGALGK 231 (536)
Q Consensus 223 ~~~l~~l~~ 231 (536)
..++..+.+
T Consensus 391 ~~vlk~l~e 399 (449)
T 2npp_B 391 YNALKLFME 399 (449)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 777766554
No 145
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=82.68 E-value=12 Score=29.51 Aligned_cols=96 Identities=10% Similarity=0.097 Sum_probs=65.7
Q ss_pred cCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHhChhhhh----hchhHH-H
Q 009359 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQ-V 480 (536)
Q Consensus 407 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~-l 480 (536)
..++|..-...+..+.. . + .-....+..+.+.+.. +++.+...|+..+..+.+++|..+.. ..++.. |
T Consensus 30 ~~~Dw~~ileicD~In~---~--~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L 103 (152)
T 3rru_A 30 QTEDWGQFMHICDIINT---T--Q-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENL 103 (152)
T ss_dssp CSCCHHHHHHHHHHHHH---S--T-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTT
T ss_pred CCccHHHHHHHHHHHhC---C--C-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHH
Confidence 35678755555555432 1 1 1234455667777764 58888888999999999999987543 445553 5
Q ss_pred HhhccCC---ChHHHHHHHHHHHHHhhhhCh
Q 009359 481 LEMINNP---HYLYRMTILQAISLLAPVMGS 508 (536)
Q Consensus 481 ~~~~~d~---~~~~r~~~~~~l~~l~~~~~~ 508 (536)
..++.++ ...||..++..+..++..++.
T Consensus 104 ~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 104 VKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp GGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 5655543 457999999999999988765
No 146
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=82.28 E-value=35 Score=32.40 Aligned_cols=251 Identities=11% Similarity=0.103 Sum_probs=137.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--hCCC----ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc-ChHH-HHHhhhH
Q 009359 251 QDKSWRVRYMVANQLYELCEA--VGPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPEL-AIQHILP 322 (536)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~--~~~~----~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~-~~~~-~~~~i~~ 322 (536)
.+++|.--..+.+.|-.+... +... .....++-.++.++..+|+.-|...-..+..+-..+ +-.. +...+-.
T Consensus 127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 206 (449)
T 2npp_B 127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206 (449)
T ss_dssp CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366888777777777776543 2211 223357777888888888888888877776665432 2221 1122222
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHhhhhhC---HHHHHHhHHHHHHHhhCCCCH-HHHHHHHHhhHHHHhhhchhHHHhh
Q 009359 323 CVKELSSDSS-QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQS 397 (536)
Q Consensus 323 ~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (536)
.+.....+.. ..=-...++.+|.+...+. +++....+...++.+.+.... ..-.....|+..++.. ...+...
T Consensus 207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~ 284 (449)
T 2npp_B 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 284 (449)
T ss_dssp HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc--CcHhHHH
Confidence 2222221111 1111345666777765543 233333344444444444332 1222344444444331 1223344
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHH---HHHHHHHHhcCcchHHHHHHHHHHHH--HHHHhChhhh
Q 009359 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLKDKVYSIRDAAANNVKR--LAEEFGPDWA 472 (536)
Q Consensus 398 i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~Vr~~a~~~l~~--l~~~~~~~~~ 472 (536)
++..+.+.=--.+..-....+.-+..+...+++..+... +...+.+++.+++..|-+.|+..+.. +...+.. .
T Consensus 285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n 362 (449)
T 2npp_B 285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--N 362 (449)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--T
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--c
Confidence 444444443445555556778888888888888877654 44456678889999999998877632 2222211 1
Q ss_pred hhchhHHHHhhc----c-CCChHHHHHHHHHHHHHhhh
Q 009359 473 MQHIVPQVLEMI----N-NPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 473 ~~~i~~~l~~~~----~-d~~~~~r~~~~~~l~~l~~~ 505 (536)
...++|.+..-+ + +=+..+|..+..++..+...
T Consensus 363 ~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 363 AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 245666654432 2 22677999999888865543
No 147
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=82.23 E-value=15 Score=28.04 Aligned_cols=99 Identities=7% Similarity=-0.002 Sum_probs=50.4
Q ss_pred chhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCh
Q 009359 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 390 ~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
|.+.+ ..++|.|...++|.||.+-..++..+..+. +.++|.+.+.+...+..=+ ...+..+...+..
T Consensus 25 ~~~~i-~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~ 91 (134)
T 3ut4_A 25 IDNEI-EPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWK---YWVIKLMIPYLIY 91 (134)
T ss_dssp CHHHH-HHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCH
T ss_pred CHHHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCH
Confidence 33443 556777777777777777666666664432 2344445555444433222 2333333333332
Q ss_pred hhhhhchhHHHHhhccCC-----ChHHHHHHHHHHHHH
Q 009359 470 DWAMQHIVPQVLEMINNP-----HYLYRMTILQAISLL 502 (536)
Q Consensus 470 ~~~~~~i~~~l~~~~~d~-----~~~~r~~~~~~l~~l 502 (536)
+ ....+.+.|.++...+ ...+...|-+.+...
T Consensus 92 ~-~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 92 P-NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp H-HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 2 2355666666665554 334555555555543
No 148
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=81.41 E-value=35 Score=31.81 Aligned_cols=252 Identities=10% Similarity=0.077 Sum_probs=139.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhC------CCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc-ChHH-HHHhhhH
Q 009359 251 QDKSWRVRYMVANQLYELCEAVG------PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPEL-AIQHILP 322 (536)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~-~~~~-~~~~i~~ 322 (536)
.+++|.--..+.+.|..+...-. +......++-.++.++..+|+.-|...-..+..+-..+ +-.. +...+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 46788888888888877755311 12223346777888999999999988877777654332 2111 1111212
Q ss_pred HHHHhccC--CCHHHHHHHHHHHHHhhhhhC---HHHHHHhHHHHHHHhhCCCCH-HHHHHHHHhhHHHHhhhchhHHHh
Q 009359 323 CVKELSSD--SSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQ 396 (536)
Q Consensus 323 ~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~ 396 (536)
.+...... ....+ ...++.+|.+...+. ++.....+...++.+-+.... ..-.....|+..++.. ...+..
T Consensus 174 if~~fiye~e~~~GI-aeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK--Dp~L~~ 250 (403)
T 3fga_B 174 IFYRFIYETEHHNGI-AELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTE 250 (403)
T ss_dssp HHHHHHHTTCCCTTH-HHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHHhcCcccCCCH-HHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh--CchhHH
Confidence 22222221 11222 245677777766552 223333334444444444332 1223344444444421 122334
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHH---HHHHHHHhcCcchHHHHHHHHHHH--HHHHHhCh--
Q 009359 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVK--RLAEEFGP-- 469 (536)
Q Consensus 397 ~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~Vr~~a~~~l~--~l~~~~~~-- 469 (536)
.++..+.+.=-..+..-....+.-+..+...+++..+.... ...+.+++.+++..|-+.|+..+. .+...+..
T Consensus 251 ~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~ 330 (403)
T 3fga_B 251 PVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA 330 (403)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhH
Confidence 44444444444455666667788888888888887776544 444667788999999998887762 12222111
Q ss_pred hhhhhchhHHHHhhcc-CCChHHHHHHHHHHHHHhhh
Q 009359 470 DWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 470 ~~~~~~i~~~l~~~~~-d~~~~~r~~~~~~l~~l~~~ 505 (536)
..+...+.|.|.+..+ +=+..+|..+..++..+...
T Consensus 331 ~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 331 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 1122344444544433 33788998888888877544
No 149
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=81.14 E-value=26 Score=30.19 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=47.7
Q ss_pred hhHHHHHHHHhcCc-ccchhhHHHhhhhhhccCCChHH-----HHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009359 124 EHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEAL-----KTELRTIYRQLCQDDMPMVRRSAATNLGKFA 191 (536)
Q Consensus 124 ~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~ 191 (536)
-++.|++..-.++. ....|.++...++.+.+.-++++ ..+++|.+...++..+...+..|...+..+.
T Consensus 100 lyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 100 LFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp GGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 45777775544443 45678899999999887755552 3567788888887777777777776666654
No 150
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=79.20 E-value=9 Score=29.58 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=40.8
Q ss_pred HHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 009359 129 LVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV 194 (536)
Q Consensus 129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~ 194 (536)
.+.+.+.++.+..--+...-|+........+...++++.|..-++++++.+...|++.|..++...
T Consensus 15 ~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 15 MIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp HHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 345555554333322222223333222233345788999999999999999999999888887643
No 151
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=78.05 E-value=21 Score=27.23 Aligned_cols=100 Identities=8% Similarity=-0.141 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccC
Q 009359 155 SAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 155 ~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 234 (536)
..+.+....++|.|...++|.||-+...++..|..+. +.+.|.+.+.++++++.=+. ..+..+...++
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~y---wil~~lv~~~~ 90 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKY---WVIKLMIPYLI 90 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHH---HHHHHHGGGCC
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHH---HHHHHHHHcCC
Confidence 3456677889999999999999999988888877654 34566666666655543332 33444444444
Q ss_pred chhhhhhhHHHHHHhcCCC-----CHHHHHHHHHHHHH
Q 009359 235 PQDCVAHILPVIVNFSQDK-----SWRVRYMVANQLYE 267 (536)
Q Consensus 235 ~~~~~~~l~~~l~~~~~d~-----~~~vR~~~~~~l~~ 267 (536)
.+ ....+.+.+.++...+ ...|...|-..|..
T Consensus 91 ~~-~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 91 YP-NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp HH-HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 32 3455666666666553 34455555444443
No 152
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=76.89 E-value=25 Score=27.61 Aligned_cols=74 Identities=4% Similarity=-0.062 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHhhhhh----HHHHHH-HHHHhhcCc---chHHHHHHHHhHHHhhcc
Q 009359 162 TELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHL----KSEIMS-IFEELTQDD---QDSVRLLAVEGCGALGKL 232 (536)
Q Consensus 162 ~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~-~l~~~l~d~---~~~vr~~a~~~l~~l~~~ 232 (536)
.+....+..-++ .+++.+...|+..|..+.+.+|.... ...++. .+.+++.+. ...||...++.+...+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 344444555454 45777888888888888887776322 223443 244455433 235777777777777766
Q ss_pred cCc
Q 009359 233 LEP 235 (536)
Q Consensus 233 ~~~ 235 (536)
++.
T Consensus 132 F~~ 134 (152)
T 3rru_A 132 FPG 134 (152)
T ss_dssp CSS
T ss_pred hCC
Confidence 654
No 153
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=76.76 E-value=32 Score=29.36 Aligned_cols=69 Identities=7% Similarity=0.026 Sum_probs=50.9
Q ss_pred HHHHHHHhhcCcchHHHHHHHH----hHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009359 203 IMSIFEELTQDDQDSVRLLAVE----GCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (536)
Q Consensus 203 l~~~l~~~l~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 271 (536)
..+.+...+.|++.-+|..++. .+..+...-.++...+.++..+...+.|++..|+.++..+|..++..
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 4566777888888888888887 54542221123455677888888889999999999999999888764
No 154
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=76.19 E-value=77 Score=32.86 Aligned_cols=114 Identities=9% Similarity=0.033 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHhhcC---cchHHHHHHHHhHHHhhcccC
Q 009359 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE--AAHLKSEIMSIFEELTQD---DQDSVRLLAVEGCGALGKLLE 234 (536)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~ 234 (536)
..+-++|.+...+.+++..+...+..++..++...+ ++.+.+.++..+-..+.. .++.--..+++++..++..+-
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 345567777788899999999999999999987433 145555555555555554 455556677888888886654
Q ss_pred c-hhhhhhhHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHhC
Q 009359 235 P-QDCVAHILPVIVNF---SQDKSWRVRYMVANQLYELCEAVG 273 (536)
Q Consensus 235 ~-~~~~~~l~~~l~~~---~~d~~~~vR~~~~~~l~~l~~~~~ 273 (536)
. ..+..++.+.+..+ ++-.++.--..+.+.+..++..++
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 3 23444555555443 333455545567788888877654
No 155
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=70.63 E-value=35 Score=26.47 Aligned_cols=73 Identities=5% Similarity=0.012 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhh---hchhHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009359 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
..+.++..+.+.+....+.-+..+++.+..++++.|.++.. ..+.+.+...+...+...|....+.+......
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 35667777777777777888999999999999998876432 44555556666666888999999999988744
No 156
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=68.31 E-value=76 Score=29.42 Aligned_cols=208 Identities=11% Similarity=0.092 Sum_probs=113.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--h----CCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhc-ChHH-HHHhhhH
Q 009359 251 QDKSWRVRYMVANQLYELCEA--V----GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPEL-AIQHILP 322 (536)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~--~----~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~-~~~~-~~~~i~~ 322 (536)
.+++|.--..+.+.|-.+... + .+......++-.++.++..+|+.-|......+..+-..+ +-.. +...+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888777777777776543 1 122233457778888889999999988877776654432 2221 1122222
Q ss_pred HHHHhccCCCHH-HHHHHHHHHHHhhhhhC---HHHHHHhHHHHHHHhhCCCCH-HHHHHHHHhhHHHHhhhchhHHHhh
Q 009359 323 CVKELSSDSSQH-VRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQS 397 (536)
Q Consensus 323 ~l~~l~~d~~~~-vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (536)
.+.....+.... =-...++.++.+...+. +++....+...++.+.+.... ..-.....|+..++.. ...+...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHHH
Confidence 233333221111 11345667777766553 233333334444444443321 1122333344443321 1223334
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHH---HHHHHhcCcchHHHHHHHHHH
Q 009359 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA---LCMQWLKDKVYSIRDAAANNV 460 (536)
Q Consensus 398 i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~---~l~~~l~d~~~~Vr~~a~~~l 460 (536)
++..+.+.=--.+..-....+.-+..+...+++..+.+...| .+.+++.+++..|-+.|+..+
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 444444433334444456777888888888888777654444 466778888888888887765
No 157
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=65.79 E-value=76 Score=28.49 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=49.8
Q ss_pred HHHHHHHhhcC---CChHHHHHHHHHHHHHHhhhchhhH------HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhC
Q 009359 398 LLPAIVELAED---RHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (536)
Q Consensus 398 i~~~l~~~~~~---~~~~~R~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (536)
+...-.++.++ ..+..|......+..+...+-+..+ .+.++..+.=..+++..+|-..++..+..+..+++
T Consensus 120 VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 120 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 33333445553 4688999999999888765433222 23455666667889999999999999988888774
No 158
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=57.79 E-value=64 Score=24.98 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc
Q 009359 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (536)
Q Consensus 199 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 235 (536)
+.+.++..+.+.+....+.-|..++..+..+.+..+.
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~ 76 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGS 76 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccc
Confidence 3456777777777767788888888888888887664
No 159
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=52.89 E-value=1.5e+02 Score=27.67 Aligned_cols=221 Identities=13% Similarity=0.128 Sum_probs=115.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhcCcc-hHHHHHHHHhHHHhhcccCc---hh
Q 009359 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP---QD 237 (536)
Q Consensus 164 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~~ 237 (536)
++..+..+++++|++-|...-..|..+-..+.. ..+...+-..+.+++...+ ..--...++.++.+.+.+.. +.
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Confidence 555677888999999999888877776544332 2233334445555444332 22234567777777766532 22
Q ss_pred hhhhhHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhcChHH
Q 009359 238 CVAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 315 (536)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~-vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (536)
....+...+..+.+.++.. .-...+.++..+.+. +. ....++..+++.---.++.=...-+.-+..+.+.+++..
T Consensus 210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK---Dp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~ 286 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK---DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE 286 (403)
T ss_dssp HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH---CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh---CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHH
Confidence 2223333444444443321 112334444444432 11 111233333333333344444445666777777777766
Q ss_pred HHHh---hhHHHHHhccCCCHHHHHHHHHHHHH--hhhhh--CHHHHHHhHHHHHHHhhC-CCCHHHHHHHHHhhHHHHh
Q 009359 316 AIQH---ILPCVKELSSDSSQHVRSALATVIMG--MAPIL--GKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQ 387 (536)
Q Consensus 316 ~~~~---i~~~l~~l~~d~~~~vr~~a~~~l~~--l~~~~--~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~ 387 (536)
+... ++..+...+++++..|-..|+..+.. +...+ ......+.+.|.+....+ +-+..||..+..++..+..
T Consensus 287 f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 287 FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5433 44445556678888887777654421 11111 122233444444544333 4477888888888777653
No 160
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=52.24 E-value=1.5e+02 Score=27.52 Aligned_cols=202 Identities=10% Similarity=0.051 Sum_probs=103.4
Q ss_pred cCCCHHHHHHHHHHHHHhhhh--hCHH----HHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhch-h-HHHhhHHH
Q 009359 329 SDSSQHVRSALATVIMGMAPI--LGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-D-LLSQSLLP 400 (536)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~--~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~i~~ 400 (536)
.|++|.--..+.+.+..+... +... .+...++-.++..+..+++.=|......+..+...+.. . .+...+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666655566655554331 2211 12234556677778888888888877777766554322 1 12233334
Q ss_pred HHHHhhcCC-ChHHHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHHHhcCcchH-HHHHHHHHHHHHHHHhChhhhhhc
Q 009359 401 AIVELAEDR-HWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQH 475 (536)
Q Consensus 401 ~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-Vr~~a~~~l~~l~~~~~~~~~~~~ 475 (536)
.+.++.... ...--..+++.++.+...+. .+.....+...++.+...+... --....+|+.++.+.- ......
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD--p~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcC--chhHHH
Confidence 444443322 22223456677777776654 1222222333333333322211 2234455555555431 113345
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhhhChHHHH---HhHHHHHHhhcCCccchhhh
Q 009359 476 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---SQLLPVVINASKDSESVAVT 532 (536)
Q Consensus 476 i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~---~~~~~~l~~~l~d~~~~vr~ 532 (536)
++..+.+.---.+.......+.-+..+...++++.+. ..++..+-+|++.+...|-+
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAE 356 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAE 356 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 5555555433344555566777777777777766543 34455566666666555544
No 161
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=50.98 E-value=1e+02 Score=26.19 Aligned_cols=70 Identities=10% Similarity=-0.092 Sum_probs=43.1
Q ss_pred hHHHHHHHhhcCCChHHHHHHHH-HHHHHHhhhc---hhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 009359 397 SLLPAIVELAEDRHWRVRLAIIE-YIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (536)
Q Consensus 397 ~i~~~l~~~~~~~~~~~R~~a~~-~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (536)
...+.+.+...+++.-.|..++. ....++.... .+...+.++..+...+.|+...|+.+...+|..+...
T Consensus 108 ~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 108 IAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp SHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 34555666777776444444444 2111122111 1234456777777788888899999999999888876
No 162
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=49.00 E-value=1.5e+02 Score=26.72 Aligned_cols=31 Identities=3% Similarity=0.035 Sum_probs=19.3
Q ss_pred hHHHHhhcc---CCChHHHHHHHHHHHHHhhhhC
Q 009359 477 VPQVLEMIN---NPHYLYRMTILQAISLLAPVMG 507 (536)
Q Consensus 477 ~~~l~~~~~---d~~~~~r~~~~~~l~~l~~~~~ 507 (536)
...++..++ ..|..+..+++..+..+....+
T Consensus 256 ~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 256 WANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp THHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 445555554 4566777777777777666655
No 163
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=46.33 E-value=1.7e+02 Score=26.45 Aligned_cols=117 Identities=9% Similarity=-0.020 Sum_probs=73.3
Q ss_pred HHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhh-hchhHH--HhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhc
Q 009359 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-IGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (536)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~~~--~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 429 (536)
++....=+..++....+.+.+....++.++..++.. .|.+.+ ...++..+..+.++....+-+.++..+..++....
T Consensus 155 EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 155 EFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp HHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence 333334455666666777777788888888877653 222222 24566777777777777777778888877766542
Q ss_pred hhh--HHHH-----------HHHHHHHHhc---CcchHHHHHHHHHHHHHHHHhCh
Q 009359 430 VGF--FDDK-----------LGALCMQWLK---DKVYSIRDAAANNVKRLAEEFGP 469 (536)
Q Consensus 430 ~~~--~~~~-----------l~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~ 469 (536)
... +.+. .++.+...++ ..+.+++..|...+..+....+.
T Consensus 235 ~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 235 NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 111 1111 1345667776 56778888888888887777553
No 164
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=40.80 E-value=3.3e+02 Score=28.23 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHhhcCcchHHHHHHHHhHHHhhcccCc--hhhhhhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHh
Q 009359 198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAV 272 (536)
Q Consensus 198 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d---~~~~vR~~~~~~l~~l~~~~ 272 (536)
.+...+.|.+...+.+.+..+...+..++..++...|. +.+.+.++..+-..++. .++.--.++++++..++..+
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 34577888888888999999998999999988875551 33455555555555555 45555567788898888776
Q ss_pred CCC-ccccchHHHHHHh---cCCCcHHHHHHHHHhHHHHHhhcC
Q 009359 273 GPE-PTRSDVVPAYVRL---LRDNEAEVRIAAAGKVTKICRILN 312 (536)
Q Consensus 273 ~~~-~~~~~l~~~l~~l---l~d~~~~vr~~a~~~l~~~~~~~~ 312 (536)
-.. .+..++.+.+..+ +.-+|+.--..+++.+..++..++
T Consensus 415 v~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 415 VMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp TTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred hcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 543 3444555554444 444556555677888888877653
No 165
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=37.62 E-value=1e+02 Score=21.52 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHh-ChhhhhhchhHHHHhhccCCCh--HHHHHHHHHHHHH
Q 009359 437 LGALCMQWLKDKV--YSIRDAAANNVKRLAEEF-GPDWAMQHIVPQVLEMINNPHY--LYRMTILQAISLL 502 (536)
Q Consensus 437 l~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~~~-~~~~~~~~i~~~l~~~~~d~~~--~~r~~~~~~l~~l 502 (536)
.+..+.+..+|.. .++|.+|-++...+...- .+.......+..|.+..+|||. ..|......++.+
T Consensus 19 ~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPNmP~htRT~IW~ivS~L 89 (94)
T 2qzg_A 19 ISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPNMPIHTRTQIWGIVSEL 89 (94)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Confidence 3335555566653 357887777776664431 1222235677777778888864 4566566666554
No 166
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=35.96 E-value=1.1e+02 Score=23.21 Aligned_cols=57 Identities=7% Similarity=-0.011 Sum_probs=30.2
Q ss_pred HhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh
Q 009359 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (536)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~ 428 (536)
.-|+.....+...+.-++...- ..+.++..+.+.+......-|...+..+..+....
T Consensus 14 ~~L~~s~~sI~~~s~w~l~~~~-------~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 14 SELSNSQQSVQTLSLWLIHHRK-------HAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNS 70 (135)
T ss_dssp HHCCSSTTHHHHHHHHHHHTGG-------GHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 3445555555555554444321 12445555555555444456777777777776543
No 167
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=34.80 E-value=2.7e+02 Score=25.47 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=6.1
Q ss_pred HHhhhhhhccCCCh
Q 009359 145 SCGLFHVAYPSAPE 158 (536)
Q Consensus 145 a~~~l~~~~~~~~~ 158 (536)
++..+....+..++
T Consensus 42 gsR~lQ~~l~~~~~ 55 (369)
T 3k49_A 42 GSRFIQRELATSPA 55 (369)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred chHHHHHHhccCCH
Confidence 34444444444444
No 168
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=32.93 E-value=2.9e+02 Score=25.26 Aligned_cols=12 Identities=8% Similarity=0.050 Sum_probs=6.2
Q ss_pred HhhHHHHHHHhh
Q 009359 395 SQSLLPAIVELA 406 (536)
Q Consensus 395 ~~~i~~~l~~~~ 406 (536)
.+.+.|.+..+.
T Consensus 333 ~~~i~p~l~~L~ 344 (369)
T 3k49_A 333 VIAIRAYLDKLN 344 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 345555555554
No 169
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=29.90 E-value=1.6e+02 Score=22.16 Aligned_cols=111 Identities=5% Similarity=0.042 Sum_probs=57.0
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhC---hhhhh--hchhHHH
Q 009359 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAM--QHIVPQV 480 (536)
Q Consensus 406 ~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~--~~i~~~l 480 (536)
++.....+......++... ...+.++..+.+.+....+.-|...++.+..+..+.. +++.. +..+|.+
T Consensus 16 L~~s~~sI~~~s~w~l~~~-------~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~ 88 (135)
T 4fu3_A 16 LSNSQQSVQTLSLWLIHHR-------KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDA 88 (135)
T ss_dssp CCSSTTHHHHHHHHHHHTG-------GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHH
T ss_pred ccccHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455566666666666442 1245566667777766666778899999999977653 22211 3334433
Q ss_pred Hh-hccCCChHHHHHHHHHHHHHhhhhChHHHHHhHHHHHHhhcCCc
Q 009359 481 LE-MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDS 526 (536)
Q Consensus 481 ~~-~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~ 526 (536)
.. .....+...|......+...-.. ..|.+.++..|...+++.
T Consensus 89 ~~~~~~~~~~~~k~kl~kll~iW~~r---~vf~~~~i~~L~~~l~~~ 132 (135)
T 4fu3_A 89 FSHVAREADEGCKKPLERLLNIWQER---SVYGGEFIQQLKLSMEDS 132 (135)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHT---TSSCHHHHHHHHHTC---
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCC---CCcCHHHHHHHHHHHhCC
Confidence 22 22222233344444555544321 123344455555555543
No 170
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=29.49 E-value=3e+02 Score=24.42 Aligned_cols=68 Identities=4% Similarity=0.109 Sum_probs=37.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc---ccchHHHHHHhcC-CCcHHHHHHHHHhHHHHH
Q 009359 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RSDVVPAYVRLLR-DNEAEVRIAAAGKVTKIC 308 (536)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~ 308 (536)
.+++.+.....+++..+|.+++..+-+++-...+... ...++..+...++ ..++|....++.+++.+.
T Consensus 191 ~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 191 SLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3555555555667788888888888887754322111 1123333333332 344555566666666655
No 171
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=29.40 E-value=1.5e+02 Score=20.78 Aligned_cols=71 Identities=11% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHHhHHHHHHHhhCCCC--HHHHHHHHHhhHHHHhhh-chhHHHhhHHHHHHHhhcCCC--hHHHHHHHHHHHHH
Q 009359 354 ATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLL 424 (536)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~-~~~~~~~~i~~~l~~~~~~~~--~~~R~~a~~~l~~l 424 (536)
...++.+..+....+|.. ..+|.+|-++...+...- ....-....+..|.+..+|++ ...|......++.+
T Consensus 14 ~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPNmP~htRT~IW~ivS~L 89 (94)
T 2qzg_A 14 DKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPNMPIHTRTQIWGIVSEL 89 (94)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Confidence 333444445555555542 366666666655553321 111112345566777778887 34565555555443
No 172
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=28.64 E-value=2.6e+02 Score=27.72 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=18.0
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHHHhhcC
Q 009359 90 PLETLCTVEETCVRDKAVESLCRIGSQMR 118 (536)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~~~~~~~ 118 (536)
.+..++++++..+...++..+..+...+.
T Consensus 321 ~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~ 349 (596)
T 4f52_E 321 HIEVFLQRTEESVISKGLELLENSLLRIE 349 (596)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHcCCchHHHHhHHHHHHHHHHhcc
Confidence 45556666666666667666666655443
No 173
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=28.08 E-value=3.3e+02 Score=24.37 Aligned_cols=11 Identities=18% Similarity=-0.073 Sum_probs=5.7
Q ss_pred HHHHHhcCcch
Q 009359 440 LCMQWLKDKVY 450 (536)
Q Consensus 440 ~l~~~l~d~~~ 450 (536)
.+..++.|+..
T Consensus 274 ~l~~L~~d~~g 284 (333)
T 3bwt_A 274 GIQSLLNDSYG 284 (333)
T ss_dssp HHHHHHTSTTH
T ss_pred HHHHHHcCChH
Confidence 34455566544
No 174
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=26.79 E-value=6.8e+02 Score=27.66 Aligned_cols=209 Identities=9% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHhchhcccCCccchhccchHHHhhhcCcchHHHHHHHHHHHHHHhh----------------cChhhHHhhHHH
Q 009359 65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----------------MREQDVVEHFIP 128 (536)
Q Consensus 65 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~~~~~~vr~~a~~~l~~~~~~----------------~~~~~~~~~l~~ 128 (536)
..+++++-+.++....+.-...+=-++.-++-+.+..-|+.+-..+.+-+.. .--+...+.++.
T Consensus 324 k~i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~ 403 (1323)
T 3s4w_B 324 KTISEAWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILL 403 (1323)
T ss_dssp HHHHHHHHHHHHHGGGSTTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHHHHhCCCcccccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHhcCcccchhhHHHhhhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q 009359 129 LVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA-HLKSEIMSIF 207 (536)
Q Consensus 129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l 207 (536)
+...+....+..+|..+..+...+....+..++.+++..+.....+.+..--..|+..|..++...+.. .....++.-+
T Consensus 404 La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~gi 483 (1323)
T 3s4w_B 404 LAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGI 483 (1323)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHGG
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHH
Q ss_pred HHhhcCcchHHHHHHHHhHHHhhcccCch---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 009359 208 EELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273 (536)
Q Consensus 208 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~ 273 (536)
...+.+-+..--......+..++-.-+.+ .+.+.+.=.+.+.+++.+.+++..-+-.-..+...++
T Consensus 484 LD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~~ 552 (1323)
T 3s4w_B 484 LDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIMA 552 (1323)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHHH
No 175
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=26.42 E-value=3.5e+02 Score=24.20 Aligned_cols=92 Identities=9% Similarity=0.057 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHhChhh------hhhchhHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009359 435 DKLGALCMQWLK---DKVYSIRDAAANNVKRLAEEFGPDW------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (536)
Q Consensus 435 ~~l~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~~------~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~l~~~ 505 (536)
+.+...-+.+.. ++.|+.|..-.+.|..+..++-+.. ....++..+.=-+++++.++-..++..+..+...
T Consensus 118 ~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n 197 (321)
T 1w9c_A 118 DAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 197 (321)
T ss_dssp HHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 334444455555 4678999999999999987753321 1244566666668899999999999999887766
Q ss_pred hC------hHHHHHhHHH---HHHhhcCCc
Q 009359 506 MG------SEITCSQLLP---VVINASKDS 526 (536)
Q Consensus 506 ~~------~~~~~~~~~~---~l~~~l~d~ 526 (536)
++ .+|+..++++ .++..+.|+
T Consensus 198 ~~~~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 198 VAQEEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 63 2334444433 444455554
No 176
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=21.90 E-value=2.5e+02 Score=20.95 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=19.1
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh
Q 009359 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (536)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~R~~a~~~l~~l~~~~ 428 (536)
+.++..+.+.+......-|...+..+..+....
T Consensus 39 ~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 39 STIVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 344555555555555566667777666666554
No 177
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.52 E-value=4.5e+02 Score=23.70 Aligned_cols=302 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCcch-HHHHHHHHhHHHhhcccCchhhhhhhHHH
Q 009359 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLEPQDCVAHILPV 245 (536)
Q Consensus 167 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 245 (536)
.+...+...++..|......+..-.-.+-.+.+...++..+.+..+++.- .+-.....-+..++. ...--..
T Consensus 40 ~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~-------~~~G~rv 112 (351)
T 3gvo_A 40 FIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLAL-------QMYGCRV 112 (351)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHT-------STTHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhh-------CHHhHHH
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc-HHHHHHHHHhHHHHHhhcChHHHHHhhhHHH
Q 009359 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRILNPELAIQHILPCV 324 (536)
Q Consensus 246 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~i~~~l 324 (536)
+.++++..+..-+......+..-...+-.+.+..+++..+++...... ..+-......+..++.. ..-...+
T Consensus 113 vQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~-------~~G~~Vv 185 (351)
T 3gvo_A 113 IQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTH-------PYGCRVI 185 (351)
T ss_dssp HHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTS-------TTHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhC-------cHhHHHH
Q ss_pred HHhccCCCHHHHHHHHHHHHHhhhhhCHHHHHHhHHHHHHHhhCCCCHHHHHHHHHhhHHHHhhhchhHHHhhHHHHHHH
Q 009359 325 KELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404 (536)
Q Consensus 325 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 404 (536)
..+++..++..|...++.+..-...+-.+.+...++..++.. ..+..|...+..+..-...+....+...++..+.
T Consensus 186 q~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~---~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l- 261 (351)
T 3gvo_A 186 QRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEH---GRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCV- 261 (351)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHH---SCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHH-
T ss_pred HHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-
Q ss_pred hhcCCChHHHHHHHHHHHH-------HHhhhchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhChhhhhhchh
Q 009359 405 LAEDRHWRVRLAIIEYIPL-------LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 477 (536)
Q Consensus 405 ~~~~~~~~~R~~a~~~l~~-------l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~ 477 (536)
...+...|...+.-+-. -...+-.+.+...++.-++....+.. |...+..+......+........++
T Consensus 262 --~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~---r~~i~~~i~~~~~~L~~~~~g~~i~ 336 (351)
T 3gvo_A 262 --THASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ---RKIIMHKIRPHITTLRKYTYGKHIL 336 (351)
T ss_dssp --HHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHH---HHHHHHHHGGGHHHHTTSTTTHHHH
T ss_pred --HhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHhcCCchHHHH
Q ss_pred HHHHhhccCCChHH
Q 009359 478 PQVLEMINNPHYLY 491 (536)
Q Consensus 478 ~~l~~~~~d~~~~~ 491 (536)
..+..++.....+.
T Consensus 337 ~kl~~~~~~~~~~~ 350 (351)
T 3gvo_A 337 AKLEKYYLKNSPDL 350 (351)
T ss_dssp HHHHHHTC------
T ss_pred HHHHHHHhhcCccC
No 178
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=21.41 E-value=4.3e+02 Score=23.41 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=27.0
Q ss_pred hhhHHHhhhhhhccCCCh-H----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 009359 141 ARVSSCGLFHVAYPSAPE-A----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT 193 (536)
Q Consensus 141 ~r~~a~~~l~~~~~~~~~-~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 193 (536)
.+..++++++.+...... . ....+++.+...+.+++..+|.+++..+-+++-.
T Consensus 164 n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~ 221 (304)
T 3ebb_A 164 NQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVC 221 (304)
T ss_dssp HHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 344555555555443222 1 2234445555555555666666666666665544
No 179
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.07 E-value=6.4e+02 Score=24.93 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=31.9
Q ss_pred hcCcchHHHHHHHHHHHHHHHHhChhhhhhchhHHHHhhccCCChHHHHHHHHHHHH
Q 009359 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISL 501 (536)
Q Consensus 445 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~r~~~~~~l~~ 501 (536)
...++..+|..|..+++.+...++.+ .+-.++..|.+-. +...++..++..+..
T Consensus 375 ~~~P~~~lR~~a~~vl~~~I~~~~~e-~R~~iL~~LL~~~--~~~~v~~~lI~~~Kd 428 (596)
T 4f52_E 375 TLCPIETLRKKSLAMLQLYINKLDSQ-GKYTLFRCLLNTS--NHSGVEAFIIQNIKN 428 (596)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHBCHH-HHHHHHHHHHHHH--CCHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHhcC--CChHHHHHHHHHHHH
Confidence 34667777888888887777776654 3344454444322 344555555555554
Done!